Citrus Sinensis ID: 016905

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380
Protein Sequence
MFGALHKCCPPSLMTKWLILVIFLNFGHSSREPDVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHLICGSSLEQPCMSRPSPPVSTSRTKLRIVVASASCGAFVLLSLGALFACRYQKLRKLKHDVFFDVAGEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKIISLSSLHCFSL
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccccccccccccccEEEccccccEEEcccccccEEccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHcccccccEEEEcccccEEEEEcccccEEEEEEEcccccccHHHHHHHHHHHHHcccccccccEEEEEccccccEEEccccccccHHHHcccccccccccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccccccccEEEEccccEEEEEcEEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEcccHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEccccccccccEEccccEEEcHHHHHHHHcccccccEEccccccEEEEEEcccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccHHHHHHcccccccccccHHHHHHHcc
Coil and Loop (DISEMBL)
mfgalhkccppslmTKWLILVIFLNfghssrepdvEGEALIEVLKALNdthgqftdwndhfvspcfswshvtcrngnvisltlgsngfsgkispsiTKLKFLASLelqdndlsgtlpdflgsmthlqslnlannkfsgsipatwsqlsnlkhldlssnnltgripmqlFSVATfnftgthlicgssleqpcmsrpsppvstsrtkLRIVVASASCGAFVLLSLGALFACRYQKLRKLKhdvffdvageddckVSLTQLRRFSCRELQLatdnfsesniigqggfgkvykgvlsdNTKVAVKRLQDyyspggeaafQREVHLISVAIHKNLLQLIGYcttsserilvyPFMQNLSVAYRLRVSHKIYTKIISLsslhcfsl
Flexible Loop (DISEMBL)
mfgalhkccppSLMTKWLILVIFLNFGHSSREPDVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHLICGSSLEQPCMSRPSPPVSTSRTKLRIVVASASCGAFVLLSLGALFACRYQKLRKLKHDVFFDVAGEDDCKVSLTQLRRFSCRELQLAtdnfsesniigqggFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKIislsslhcfsl
Low Complexity Region (SEG)
MFGALHKCCPPSLMTKWLILVIFLNFGHSSREPDVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHLICGSSLEQPCMsrpsppvstsrtKLRIVVASASCGAFVLLSLGALFACRYQKLRKLKHDVFFDVAGEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKIISLSSLHCFSL
Disordered region (IsUnstruct)
***ALHKCCPPSLMTKWLILVIFLNFGHSSREPDVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHLICGSS******************KLRIVVASASCGAFVLLSLGALFACRYQKLRKLKHDVFFDVAGEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKIISLSSLHCF**
Disordered Region (DISOPRED)
MFGALHKCCPPSLMTKWLILVIFLNFGHS*********ALIEVLKALNDTHGQFTDWNDHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHLICGS************************VASASCGAFVLLSLGALFACRYQ***********************TQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYY***G*AAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKIISLSSLHCFSL
Disordered Region (DISEMBL)
MFGALHKCCPPSLMTKWLILVIFLNFGHSSREPDVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHLICGSSLE***************TKLRIVVASASCGAFVLLSLGALFACRYQKLRKLKHDVFFDVAGEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKIISLSSLHCFSL
Disordered Region (DISPRO)
*****HKCCPPSLMTKWLILVIFLNFGHSSREPDVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHLICGSSLEQPCMSR********RTKLRIVVASASCGAFVLLSLGALFACRYQKLRKLKHDVFFDVAGEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKIISLSSLHCFSL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFGALHKCCPPSLMTKWLILVIFLNFGHSSREPDVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHLICGSSLEQPCMSRPSPPVSTSRTKLRIVVASASCGAFVLLSLGALFACRYQKLRKLKHDVFFDVAGEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKIISLSSLHCFSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	380	2.2.26 [Sep-21-2011]
Q8W4S5	614	Probable LRR receptor-lik	yes	no	0.913	0.565	0.632	1e-130
C0LGX1	607	Probable LRR receptor-lik	no	no	0.868	0.543	0.483	5e-85
C0LGT1	613	Probable LRR receptor-lik	no	no	0.857	0.531	0.461	6e-83
Q0WVM4	634	Probable LRR receptor-lik	no	no	0.892	0.534	0.408	3e-64
Q8RY65	635	Protein NSP-INTERACTING K	no	no	0.839	0.502	0.388	5e-64
Q9LFS4	638	Protein NSP-INTERACTING K	no	no	0.860	0.512	0.380	1e-62
Q94F62	615	BRASSINOSTEROID INSENSITI	no	no	0.873	0.539	0.419	1e-61
Q8VYT3	648	Probable LRR receptor-lik	no	no	0.876	0.513	0.396	2e-60
Q93ZS4	632	Protein NSP-INTERACTING K	no	no	0.886	0.533	0.375	2e-60
Q94AG2	625	Somatic embryogenesis rec	no	no	0.857	0.521	0.398	2e-57

>sp|Q8W4S5|Y5371_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g63710 OS=Arabidopsis thaliana GN=At5g63710 PE=2 SV=1

 Score =  466 bits (1199), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 220/348 (63%), Positives = 282/348 (81%), Gaps = 1/348 (0%)

Query: 13  LMTKWLILVIFLNFGHSSREPDVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWSHVT 72
           L+ +  + + F+    S+ +PD+EG AL+++  +LND+  +   W   FVSPC+SWS+VT
Sbjct: 30  LILQCFMALAFVGITSSTTQPDIEGGALLQLRDSLNDSSNRL-KWTRDFVSPCYSWSYVT 88

Query: 73  CRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLA 132
           CR  +V++L L S+GF+G +SP+ITKLKFL +LELQ+N LSG LPD LG+M +LQ+LNL+
Sbjct: 89  CRGQSVVALNLASSGFTGTLSPAITKLKFLVTLELQNNSLSGALPDSLGNMVNLQTLNLS 148

Query: 133 NNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHLICGSSLEQPCM 192
            N FSGSIPA+WSQLSNLKHLDLSSNNLTG IP Q FS+ TF+F+GT LICG SL QPC 
Sbjct: 149 VNSFSGSIPASWSQLSNLKHLDLSSNNLTGSIPTQFFSIPTFDFSGTQLICGKSLNQPCS 208

Query: 193 SRPSPPVSTSRTKLRIVVASASCGAFVLLSLGALFACRYQKLRKLKHDVFFDVAGEDDCK 252
           S    PV++S+ KLR +  +ASC A ++L LGA+    + ++R+ K+D+FFDVAGEDD K
Sbjct: 209 SSSRLPVTSSKKKLRDITLTASCVASIILFLGAMVMYHHHRVRRTKYDIFFDVAGEDDRK 268

Query: 253 VSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGE 312
           +S  QL+RFS RE+QLATD+F+ESN+IGQGGFGKVY+G+L D TKVAVKRL DY+SPGGE
Sbjct: 269 ISFGQLKRFSLREIQLATDSFNESNLIGQGGFGKVYRGLLPDKTKVAVKRLADYFSPGGE 328

Query: 313 AAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
           AAFQRE+ LISVA+HKNLL+LIG+CTTSSERILVYP+M+NLSVAYRLR
Sbjct: 329 AAFQREIQLISVAVHKNLLRLIGFCTTSSERILVYPYMENLSVAYRLR 376

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGX1|Y5524_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g65240 OS=Arabidopsis thaliana GN=At5g65240 PE=2 SV=1

 Score =  315 bits (806), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 173/358 (48%), Positives = 225/358 (62%), Gaps = 28/358 (7%)

Query: 29  SSREPDVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWSHVTCRNG-NVISLTLG--- 84
           SS  PD +G+AL  +  +L  +  Q +DWN + V PC +WS V C +  +V S+TL    
Sbjct: 16  SSVSPDAQGDALFALRSSLRASPEQLSDWNQNQVDPC-TWSQVICDDKKHVTSVTLSYMN 74

Query: 85  ----------------------SNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGS 122
                                  NG  G I  SI  L  L SL+L+DN L+  +P  LG+
Sbjct: 75  FSSGTLSSGIGILTTLKTLTLKGNGIMGGIPESIGNLSSLTSLDLEDNHLTDRIPSTLGN 134

Query: 123 MTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHLI 182
           + +LQ L L+ N  +GSIP + + LS L ++ L SNNL+G IP  LF +  +NFT  +L 
Sbjct: 135 LKNLQFLTLSRNNLNGSIPDSLTGLSKLINILLDSNNLSGEIPQSLFKIPKYNFTANNLS 194

Query: 183 CGSSLEQPCMSRPSPPVSTSRTKLRIVVASASCGAFVLLSLGALFACRYQKLRKLKHDVF 242
           CG +  QPC++  SP   +S  K  I+    S  A +LL     F C+  K +  K DVF
Sbjct: 195 CGGTFPQPCVTESSPSGDSSSRKTGIIAGVVSGIAVILLGFFFFFFCK-DKHKGYKRDVF 253

Query: 243 FDVAGEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKR 302
            DVAGE D +++  QLRRF+ RELQLATD FSE N++GQGGFGKVYKG+LSD TKVAVKR
Sbjct: 254 VDVAGEVDRRIAFGQLRRFAWRELQLATDEFSEKNVLGQGGFGKVYKGLLSDGTKVAVKR 313

Query: 303 LQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
           L D+  PGG+ AFQREV +ISVA+H+NLL+LIG+CTT +ER+LVYPFMQNLSVAY LR
Sbjct: 314 LTDFERPGGDEAFQREVEMISVAVHRNLLRLIGFCTTQTERLLVYPFMQNLSVAYCLR 371

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGT1|Y5129_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1

 Score =  308 bits (788), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 163/353 (46%), Positives = 222/353 (62%), Gaps = 27/353 (7%)

Query: 33  PDVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWSHVTCRNGN-VISLTLGSNGFSGK 91
           PD +G+AL  +  +L     Q +DWN + V+PC +WS V C + N V SLTL    FSG 
Sbjct: 27  PDAQGDALFALRISLRALPNQLSDWNQNQVNPC-TWSQVICDDKNFVTSLTLSDMNFSGT 85

Query: 92  ISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLK 151
           +S  +  L+ L +L L+ N ++G +P+  G++T L SL+L +N+ +G IP+T   L  L+
Sbjct: 86  LSSRVGILENLKTLTLKGNGITGEIPEDFGNLTSLTSLDLEDNQLTGRIPSTIGNLKKLQ 145

Query: 152 HLDLSSNNLTG------------------------RIPMQLFSVATFNFTGTHLICGSSL 187
            L LS N L G                        +IP  LF +  +NFT  +L CG   
Sbjct: 146 FLTLSRNKLNGTIPESLTGLPNLLNLLLDSNSLSGQIPQSLFEIPKYNFTSNNLNCGGRQ 205

Query: 188 EQPCMSRPSPPVSTSRTKLRIVVASASCGAFVLLSLGALFACRYQKLRKLKHDVFFDVAG 247
             PC+S  +    +S+ K  I+    +    VL  +     C+  + +  + DVF DVAG
Sbjct: 206 PHPCVSAVAHSGDSSKPKTGIIAGVVAGVTVVLFGILLFLFCK-DRHKGYRRDVFVDVAG 264

Query: 248 EDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYY 307
           E D +++  QL+RF+ RELQLATDNFSE N++GQGGFGKVYKGVL DNTKVAVKRL D+ 
Sbjct: 265 EVDRRIAFGQLKRFAWRELQLATDNFSEKNVLGQGGFGKVYKGVLPDNTKVAVKRLTDFE 324

Query: 308 SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
           SPGG+AAFQREV +ISVA+H+NLL+LIG+CTT +ER+LVYPFMQNLS+A+RLR
Sbjct: 325 SPGGDAAFQREVEMISVAVHRNLLRLIGFCTTQTERLLVYPFMQNLSLAHRLR 377

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q0WVM4|Y2239_ARATH Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1

 Score =  245 bits (626), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 154/377 (40%), Positives = 216/377 (57%), Gaps = 38/377 (10%)

Query: 18  LILVIFLNFGHSSREPDVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWSHVTCRNGN 77
           L+L  F+    SS   + E EALI +   L+D HG F +W++  V PC SW+ ++C + N
Sbjct: 16  LLLCFFVTCSLSSEPRNPEVEALINIKNELHDPHGVFKNWDEFSVDPC-SWTMISCSSDN 74

Query: 78  -VISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            VI L   S   SG +S SI  L  L  + LQ+N++SG +P  + S+  LQ+L+L+NN+F
Sbjct: 75  LVIGLGAPSQSLSGTLSGSIGNLTNLRQVSLQNNNISGKIPPEICSLPKLQTLDLSNNRF 134

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQL----------------------FSVATF 174
           SG IP + +QLSNL++L L++N+L+G  P  L                      F   TF
Sbjct: 135 SGEIPGSVNQLSNLQYLRLNNNSLSGPFPASLSQIPHLSFLDLSYNNLRGPVPKFPARTF 194

Query: 175 NFTGTHLICGSSLEQPCM-SRPSPPVSTS-------RTKLRIVVASASCG--AFVLLSLG 224
           N  G  LIC +SL + C  S  + P+S S       RT +  V    S G    V+LSLG
Sbjct: 195 NVAGNPLICKNSLPEICSGSISASPLSVSLRSSSGRRTNILAVALGVSLGFAVSVILSLG 254

Query: 225 ALFACRYQKLRKLKHDVFFDVAGEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGF 284
             F    +K R+L      D   +++  + L  LR F+ REL +ATD FS  +I+G GGF
Sbjct: 255 --FIWYRKKQRRLTMLRISD--KQEEGLLGLGNLRSFTFRELHVATDGFSSKSILGAGGF 310

Query: 285 GKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERI 344
           G VY+G   D T VAVKRL+D     G + F+ E+ +IS+A+H+NLL+LIGYC +SSER+
Sbjct: 311 GNVYRGKFGDGTVVAVKRLKDVNGTSGNSQFRTELEMISLAVHRNLLRLIGYCASSSERL 370

Query: 345 LVYPFMQNLSVAYRLRV 361
           LVYP+M N SVA RL+ 
Sbjct: 371 LVYPYMSNGSVASRLKA 387

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8RY65|NIK2_ARATH Protein NSP-INTERACTING KINASE 2 OS=Arabidopsis thaliana GN=NIK2 PE=1 SV=1

 Score =  245 bits (625), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 140/360 (38%), Positives = 205/360 (56%), Gaps = 41/360 (11%)

Query: 39  ALIEVLKALNDTHGQFTDWNDHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITK 98
           ALI +  +L D HG   +W+D  V PC SW+ +TC +G VI L   S   SG +S SI  
Sbjct: 45  ALIGIKSSLTDPHGVLMNWDDTAVDPC-SWNMITCSDGFVIRLEAPSQNLSGTLSSSIGN 103

Query: 99  LKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSN 158
           L  L ++ LQ+N ++G +P  +G +  L++L+L+ N F+G IP T S   NL++L +++N
Sbjct: 104 LTNLQTVLLQNNYITGNIPHEIGKLMKLKTLDLSTNNFTGQIPFTLSYSKNLQYLRVNNN 163

Query: 159 NLTGRIPMQLFSVA----------------------TFNFTGTHLICGSSLEQPCMSRPS 196
           +LTG IP  L ++                       TFN  G   IC +  E+ C     
Sbjct: 164 SLTGTIPSSLANMTQLTFLDLSYNNLSGPVPRSLAKTFNVMGNSQICPTGTEKDCNGTQP 223

Query: 197 PPVS--------------TSRTKLRIVVA-SASCGAFVLLSLGALFACRYQKLRKLKHDV 241
            P+S              T   K+ +V   S +C   +++  G L    + + R  K  +
Sbjct: 224 KPMSITLNSSQNKSSDGGTKNRKIAVVFGVSLTCVCLLIIGFGFLL---WWRRRHNKQVL 280

Query: 242 FFDVAGEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVK 301
           FFD+  ++  ++ L  LRRF+ +ELQ AT NFS  N++G+GGFG VYKG L D + +AVK
Sbjct: 281 FFDINEQNKEEMCLGNLRRFNFKELQSATSNFSSKNLVGKGGFGNVYKGCLHDGSIIAVK 340

Query: 302 RLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRV 361
           RL+D  + GGE  FQ E+ +IS+A+H+NLL+L G+CTTSSER+LVYP+M N SVA RL+ 
Sbjct: 341 RLKDINNGGGEVQFQTELEMISLAVHRNLLRLYGFCTTSSERLLVYPYMSNGSVASRLKA 400

Involved in defense response to geminivirus infection (By similarity). Phosphorylates RPL10A in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LFS4|NIK1_ARATH Protein NSP-INTERACTING KINASE 1 OS=Arabidopsis thaliana GN=NIK1 PE=1 SV=1

 Score =  240 bits (613), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 141/371 (38%), Positives = 212/371 (57%), Gaps = 44/371 (11%)

Query: 29  SSREPDVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWSHVTCRNGN-VISLTLGSNG 87
           S +  + E +AL+++  +L+D HG   +W+   V PC SW+ VTC + N VI L   S  
Sbjct: 34  SPKGVNFEVQALMDIKASLHDPHGVLDNWDRDAVDPC-SWTMVTCSSENFVIGLGTPSQN 92

Query: 88  FSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQL 147
            SG +SPSIT L  L  + LQ+N++ G +P  +G +T L++L+L++N F G IP +   L
Sbjct: 93  LSGTLSPSITNLTNLRIVLLQNNNIKGKIPAEIGRLTRLETLDLSDNFFHGEIPFSVGYL 152

Query: 148 SNLKHLDLSSNNLTGRIPMQL----------------------FSVATFNFTGTHLICGS 185
            +L++L L++N+L+G  P+ L                      F+  TF+  G  LIC +
Sbjct: 153 QSLQYLRLNNNSLSGVFPLSLSNMTQLAFLDLSYNNLSGPVPRFAAKTFSIVGNPLICPT 212

Query: 186 SLEQPCMSRPSPPVST-------------SRTKLRIVVASASCG--AFVLLSLGALFACR 230
             E  C      P+S              SR     +   +S G  + + +++G     R
Sbjct: 213 GTEPDCNGTTLIPMSMNLNQTGVPLYAGGSRNHKMAIAVGSSVGTVSLIFIAVGLFLWWR 272

Query: 231 YQKLRKLKHDVFFDVA-GEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYK 289
               ++   + FFDV  G    +VSL  LRRF  RELQ+AT+NFS  N++G+GG+G VYK
Sbjct: 273 ----QRHNQNTFFDVKDGNHHEEVSLGNLRRFGFRELQIATNNFSSKNLLGKGGYGNVYK 328

Query: 290 GVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF 349
           G+L D+T VAVKRL+D  + GGE  FQ EV +IS+A+H+NLL+L G+C T +E++LVYP+
Sbjct: 329 GILGDSTVVAVKRLKDGGALGGEIQFQTEVEMISLAVHRNLLRLYGFCITQTEKLLVYPY 388

Query: 350 MQNLSVAYRLR 360
           M N SVA R++
Sbjct: 389 MSNGSVASRMK 399

Involved in defense response to geminivirus infection via regulation of the nuclear trafficking of RPL10A. Phosphorylates RPL10A in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q94F62|BAK1_ARATH BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2

 Score =  237 bits (604), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 158/377 (41%), Positives = 215/377 (57%), Gaps = 45/377 (11%)

Query: 17  WLILVIFLNFGHSSREPDVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWSHVTCRNG 76
           WLILV+ L    S    + EG+AL  +  +L D +     W+   V+PC +W HVTC + 
Sbjct: 12  WLILVLDLVLRVSG---NAEGDALSALKNSLADPNKVLQSWDATLVTPC-TWFHVTCNSD 67

Query: 77  N-VISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
           N V  + LG+   SG++   + +L  L  LEL  N+++GT+P+ LG++T L SL+L  N 
Sbjct: 68  NSVTRVDLGNANLSGQLVMQLGQLPNLQYLELYSNNITGTIPEQLGNLTELVSLDLYLNN 127

Query: 136 FSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFN--------FTGTHLICGS-S 186
            SG IP+T  +L  L+ L L++N+L+G IP  L +V T           TG   + GS S
Sbjct: 128 LSGPIPSTLGRLKKLRFLRLNNNSLSGEIPRSLTAVLTLQVLDLSNNPLTGDIPVNGSFS 187

Query: 187 LEQPCMSRPSPPVSTSRTKL----------------------RIVVASASCGAFVLLSLG 224
           L          P+S + TKL                      RI  A A   A     L 
Sbjct: 188 L--------FTPISFANTKLTPLPASPPPPISPTPPSPAGSNRITGAIAGGVAAGAALLF 239

Query: 225 ALFACRYQKLRKLK-HDVFFDVAGEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGG 283
           A+ A      R+ K  D FFDV  E+D +V L QL+RFS RELQ+A+DNFS  NI+G+GG
Sbjct: 240 AVPAIALAWWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVASDNFSNKNILGRGG 299

Query: 284 FGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSER 343
           FGKVYKG L+D T VAVKRL++  + GGE  FQ EV +IS+A+H+NLL+L G+C T +ER
Sbjct: 300 FGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTER 359

Query: 344 ILVYPFMQNLSVAYRLR 360
           +LVYP+M N SVA  LR
Sbjct: 360 LLVYPYMANGSVASCLR 376

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Controls the expression of genes associated with innate immunity in the absence of pathogens or elicitors. Involved in brassinosteroid (BR) signal transduction. Phosphorylates BRI1. May be involved in changing the equilibrium between plasma membrane-located BRI1 homodimers and endocytosed BRI1-BAK1 heterodimers. Interaction with MSBP1 stimulates the endocytosis of BAK1 and suppresses brassinosteroid signaling. Acts in pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) via its interaction with FLS2 and the phosphorylation of BIK1. Involved in programmed cell death (PCD) control. Positively regulates the BR-dependent plant growth pathway and negatively regulates the BR-independent cell-death pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VYT3|Y4052_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g30520 OS=Arabidopsis thaliana GN=At4g30520 PE=2 SV=1

 Score =  233 bits (595), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 146/368 (39%), Positives = 204/368 (55%), Gaps = 35/368 (9%)

Query: 24  LNFGHSSREPDVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWSHVTCRNGN-VISLT 82
           L      R P+VE  ALI +   L+D HG   +W++  V PC SW+ +TC   N VI L 
Sbjct: 27  LTLSSEPRNPEVE--ALISIRNNLHDPHGALNNWDEFSVDPC-SWAMITCSPDNLVIGLG 83

Query: 83  LGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPA 142
             S   SG +S SI  L  L  + LQ+N++SG +P  LG +  LQ+L+L+NN+FSG IP 
Sbjct: 84  APSQSLSGGLSESIGNLTNLRQVSLQNNNISGKIPPELGFLPKLQTLDLSNNRFSGDIPV 143

Query: 143 TWSQLSNLKHLDLSSNNLTGRIPMQL----------------------FSVATFNFTGTH 180
           +  QLS+L++L L++N+L+G  P  L                      F   TFN  G  
Sbjct: 144 SIDQLSSLQYLRLNNNSLSGPFPASLSQIPHLSFLDLSYNNLSGPVPKFPARTFNVAGNP 203

Query: 181 LICGSSLEQPC--------MSRPSPPVSTSRTKLRIVVASASCGAFVLLSLGALFACRYQ 232
           LIC S+  + C        +S      S  R+    +  S S G+ V+L L     C Y+
Sbjct: 204 LICRSNPPEICSGSINASPLSVSLSSSSGRRSNRLAIALSVSLGSVVILVLALGSFCWYR 263

Query: 233 KLRKLKHDVFFDVAGEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVL 292
           K ++    +  +   E+  +  L  LR F+ REL + TD FS  NI+G GGFG VY+G L
Sbjct: 264 KKQRRLLILNLNDKQEEGLQ-GLGNLRSFTFRELHVYTDGFSSKNILGAGGFGNVYRGKL 322

Query: 293 SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQN 352
            D T VAVKRL+D     G++ F+ E+ +IS+A+HKNLL+LIGYC TS ER+LVYP+M N
Sbjct: 323 GDGTMVAVKRLKDINGTSGDSQFRMELEMISLAVHKNLLRLIGYCATSGERLLVYPYMPN 382

Query: 353 LSVAYRLR 360
            SVA +L+
Sbjct: 383 GSVASKLK 390

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q93ZS4|NIK3_ARATH Protein NSP-INTERACTING KINASE 3 OS=Arabidopsis thaliana GN=NIK3 PE=1 SV=1

 Score =  233 bits (595), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 144/383 (37%), Positives = 212/383 (55%), Gaps = 46/383 (12%)

Query: 17  WLILVIFLNFGHSSREP---DVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWSHVTC 73
           +L+ V F +   ++  P   + E  AL+ V   LND +    +W+ + V PC SW  V+C
Sbjct: 13  FLVFVWFFDISSATLSPTGVNYEVTALVAVKNELNDPYKVLENWDVNSVDPC-SWRMVSC 71

Query: 74  RNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLAN 133
            +G V SL L S   SG +SP I  L +L S+ LQ+N ++G +P+ +G +  LQSL+L+N
Sbjct: 72  TDGYVSSLDLPSQSLSGTLSPRIGNLTYLQSVVLQNNAITGPIPETIGRLEKLQSLDLSN 131

Query: 134 NKFSGSIPATW------------------------SQLSNLKHLDLSSNNLTGRIPMQLF 169
           N F+G IPA+                         S++  L  +D+S NNL+G +P    
Sbjct: 132 NSFTGEIPASLGELKNLNYLRLNNNSLIGTCPESLSKIEGLTLVDISYNNLSGSLPK--V 189

Query: 170 SVATFNFTGTHLICGSSLEQPCMSRPSP--------PVSTSRTKLRIVVASASCGAFVLL 221
           S  TF   G  LICG      C + P P          S +RT    V  + +       
Sbjct: 190 SARTFKVIGNALICGPKAVSNCSAVPEPLTLPQDGPDESGTRTNGHHVALAFAASFSAAF 249

Query: 222 SL----GALFACRYQKLRKLKHDVFFDVAGEDDCKVSLTQLRRFSCRELQLATDNFSESN 277
            +    G     RY++ ++    +FFDV  + D +VSL  L+R++ +EL+ AT++F+  N
Sbjct: 250 FVFFTSGMFLWWRYRRNKQ----IFFDVNEQYDPEVSLGHLKRYTFKELRSATNHFNSKN 305

Query: 278 IIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYC 337
           I+G+GG+G VYKG L+D T VAVKRL+D    GGE  FQ EV  IS+A+H+NLL+L G+C
Sbjct: 306 ILGRGGYGIVYKGHLNDGTLVAVKRLKDCNIAGGEVQFQTEVETISLALHRNLLRLRGFC 365

Query: 338 TTSSERILVYPFMQNLSVAYRLR 360
           +++ ERILVYP+M N SVA RL+
Sbjct: 366 SSNQERILVYPYMPNGSVASRLK 388

Involved in defense response to geminivirus infection.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q94AG2|SERK1_ARATH Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2

 Score =  223 bits (568), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 145/364 (39%), Positives = 200/364 (54%), Gaps = 38/364 (10%)

Query: 34  DVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWSHVTCRNGN-VISLTLGSNGFSGKI 92
           ++EG+AL  +   L D +     W+   V+PC +W HVTC N N VI + LG+   SG +
Sbjct: 27  NLEGDALHTLRVTLVDPNNVLQSWDPTLVNPC-TWFHVTCNNENSVIRVDLGNAELSGHL 85

Query: 93  SPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKH 152
            P +  LK L  LEL  N+++G +P  LG++T+L SL+L  N FSG IP +  +LS L+ 
Sbjct: 86  VPELGVLKNLQYLELYSNNITGPIPSNLGNLTNLVSLDLYLNSFSGPIPESLGKLSKLRF 145

Query: 153 L------------------------DLSSNNLTGRIPMQ-LFSVAT-FNFTGTHLICGSS 186
           L                        DLS+N L+G +P    FS+ T  +F     +CG  
Sbjct: 146 LRLNNNSLTGSIPMSLTNITTLQVLDLSNNRLSGSVPDNGSFSLFTPISFANNLDLCGPV 205

Query: 187 LEQPCMSRPSPPVSTSRTKLRIVVASASCGAFVLLSLGALFACRYQKL----------RK 236
              PC   P         +   V   +  G    ++ G                    R+
Sbjct: 206 TSHPCPGSPPFSPPPPFIQPPPVSTPSGYGITGAIAGGVAAGAALLFAAPAIAFAWWRRR 265

Query: 237 LKHDVFFDVAGEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNT 296
              D+FFDV  E+D +V L QL+RFS RELQ+A+D FS  NI+G+GGFGKVYKG L+D T
Sbjct: 266 KPLDIFFDVPAEEDPEVHLGQLKRFSLRELQVASDGFSNKNILGRGGFGKVYKGRLADGT 325

Query: 297 KVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVA 356
            VAVKRL++  +PGGE  FQ EV +IS+A+H+NLL+L G+C T +ER+LVYP+M N SVA
Sbjct: 326 LVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVA 385

Query: 357 YRLR 360
             LR
Sbjct: 386 SCLR 389

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Phosphorylates BRI1 on 'Ser-887' and CDC48 on at least one threonine residue and on 'Ser-41'. Confers embryogenic competence. Acts redundantly with SERK2 as a control point for sporophytic development controlling male gametophyte production. Involved in the brassinolide signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
359480667	621	PREDICTED: probable LRR receptor-like se	0.942	0.576	0.717	1e-149
296082635	756	unnamed protein product [Vitis vinifera]	0.892	0.448	0.734	1e-145
255568877	598	ATP binding protein, putative [Ricinus c	0.942	0.598	0.683	1e-143
224126743	595	predicted protein [Populus trichocarpa]	0.944	0.603	0.688	1e-140
224060473	594	predicted protein [Populus trichocarpa]	0.944	0.604	0.672	1e-138
356512884	596	PREDICTED: probable LRR receptor-like se	0.923	0.588	0.667	1e-135
356527105	595	PREDICTED: probable LRR receptor-like se	0.923	0.589	0.660	1e-135
357520193	597	Plasma membrane receptor-like kinase [Me	0.926	0.589	0.647	1e-131
297793957	614	hypothetical protein ARALYDRAFT_496559 [	0.939	0.581	0.618	1e-130
10177052	579	receptor-like protein kinase [Arabidopsi	0.886	0.582	0.647	1e-129

>gi|359480667|ref|XP_002272767.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g63710-like [Vitis vinifera]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 259/361 (71%), Positives = 300/361 (83%), Gaps = 3/361 (0%)

Query: 2   FGALHKCC--PPSLMTKWLILVIFLNFGHSSREPDVEGEALIEVLKALNDTHGQFTDWND 59
           FG L  CC  P  L+  WLIL + L F +SS  PDVEGEAL++ LK LND++ + TDWND
Sbjct: 27  FGLL-SCCLVPLKLILSWLILFVMLRFSYSSNGPDVEGEALVDFLKTLNDSNNRITDWND 85

Query: 60  HFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDF 119
           HFVSPCFSWS+VTCRNGNVISL+L S GFSG +SPSITKLKFLASL+L+DN+LSG LPD+
Sbjct: 86  HFVSPCFSWSNVTCRNGNVISLSLASKGFSGTLSPSITKLKFLASLDLKDNNLSGALPDY 145

Query: 120 LGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGT 179
           L SM +LQ+L+LA N FSGSIP++W QLSN+KHLDLSSN+LTGRIP QLFSV TFNFTG 
Sbjct: 146 LSSMINLQNLDLARNNFSGSIPSSWGQLSNIKHLDLSSNDLTGRIPEQLFSVPTFNFTGN 205

Query: 180 HLICGSSLEQPCMSRPSPPVSTSRTKLRIVVASASCGAFVLLSLGALFACRYQKLRKLKH 239
            L CGSSL+QPC S  + PVST ++KLR+V   A C AF+LLSLGA+FA RY    K+K 
Sbjct: 206 RLTCGSSLQQPCASGSTIPVSTKKSKLRVVTPVAICAAFILLSLGAIFAYRYCYAHKIKR 265

Query: 240 DVFFDVAGEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVA 299
           DVF DV GED+CK+S  Q+RRFS  ELQLATD FSESNIIGQGGFGKVY+GVL + TKVA
Sbjct: 266 DVFHDVTGEDECKISFGQVRRFSWHELQLATDEFSESNIIGQGGFGKVYRGVLPNGTKVA 325

Query: 300 VKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRL 359
           VKRL DY++PGGEAAFQREV LISVA+HKNLL+LIG+CTT +ERILVYPFMQNLSVAYRL
Sbjct: 326 VKRLSDYHNPGGEAAFQREVQLISVAVHKNLLRLIGFCTTFNERILVYPFMQNLSVAYRL 385

Query: 360 R 360
           R
Sbjct: 386 R 386

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082635|emb|CBI21640.3| unnamed protein product [Vitis vinifera]

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 249/339 (73%), Positives = 289/339 (85%)

Query: 24  LNFGHSSREPDVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWSHVTCRNGNVISLTL 83
           L F +SS  PDVEGEAL++ LK LND++ + TDWNDHFVSPCFSWS+VTCRNGNVISL+L
Sbjct: 2   LRFSYSSNGPDVEGEALVDFLKTLNDSNNRITDWNDHFVSPCFSWSNVTCRNGNVISLSL 61

Query: 84  GSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPAT 143
            S GFSG +SPSITKLKFLASL+L+DN+LSG LPD+L SM +LQ+L+LA N FSGSIP++
Sbjct: 62  ASKGFSGTLSPSITKLKFLASLDLKDNNLSGALPDYLSSMINLQNLDLARNNFSGSIPSS 121

Query: 144 WSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHLICGSSLEQPCMSRPSPPVSTSR 203
           W QLSN+KHLDLSSN+LTGRIP QLFSV TFNFTG  L CGSSL+QPC S  + PVST +
Sbjct: 122 WGQLSNIKHLDLSSNDLTGRIPEQLFSVPTFNFTGNRLTCGSSLQQPCASGSTIPVSTKK 181

Query: 204 TKLRIVVASASCGAFVLLSLGALFACRYQKLRKLKHDVFFDVAGEDDCKVSLTQLRRFSC 263
           +KLR+V   A C AF+LLSLGA+FA RY    K+K DVF DV GED+CK+S  Q+RRFS 
Sbjct: 182 SKLRVVTPVAICAAFILLSLGAIFAYRYCYAHKIKRDVFHDVTGEDECKISFGQVRRFSW 241

Query: 264 RELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLIS 323
            ELQLATD FSESNIIGQGGFGKVY+GVL + TKVAVKRL DY++PGGEAAFQREV LIS
Sbjct: 242 HELQLATDEFSESNIIGQGGFGKVYRGVLPNGTKVAVKRLSDYHNPGGEAAFQREVQLIS 301

Query: 324 VAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVS 362
           VA+HKNLL+LIG+CTT +ERILVYPFMQNLSVAYRLRV+
Sbjct: 302 VAVHKNLLRLIGFCTTFNERILVYPFMQNLSVAYRLRVA 340

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568877|ref|XP_002525409.1| ATP binding protein, putative [Ricinus communis] gi|223535300|gb|EEF36976.1| ATP binding protein, putative [Ricinus communis]

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/360 (68%), Positives = 301/360 (83%), Gaps = 2/360 (0%)

Query: 1   MFGALHKCCPPSLMTKWLILVIFLNFGHSSREPDVEGEALIEVLKALNDTHGQFTDWNDH 60
           MFGA     P  L+   LIL+ FL  G+ S++PD+EGEALI++L ALND++ +  DWN +
Sbjct: 6   MFGAASIWHPLKLVISCLILLNFLCVGYPSKDPDLEGEALIQLLSALNDSNHRVEDWNYY 65

Query: 61  FVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFL 120
            VSPCFSWSH+TCRNGNVISL+L +NGFSG +SP+ITKL+FL +LELQ+N+LSG LPD+L
Sbjct: 66  LVSPCFSWSHITCRNGNVISLSLAANGFSGTLSPAITKLRFLVNLELQNNNLSGPLPDYL 125

Query: 121 GSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTH 180
           GS+THL++LNLA+NKF GSIP  W +L NLKHLD+SSNNLTGR+P Q FSV  FNFT T 
Sbjct: 126 GSLTHLENLNLASNKFHGSIPIAWGKLFNLKHLDISSNNLTGRVPKQFFSVPEFNFTETS 185

Query: 181 LICGSSLEQPCMSRPSPPVSTSRTKLRIVVASASCGAFVLLSLGALFACRYQKLRKLKHD 240
           L CGS LE+PC+S+   PVS ++++L I+V +ASCGAF+L  LG  FA R+ +LR+LK+D
Sbjct: 186 LTCGSRLEEPCVSKSPSPVSPNKSRLSIIVIAASCGAFILFLLG--FAYRHHRLRRLKND 243

Query: 241 VFFDVAGEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAV 300
           VF DVAGEDD K+SL Q++RFS RE+QLATDNFS+SNIIGQGGFGKVYKGVLSDNTKVAV
Sbjct: 244 VFVDVAGEDDRKISLGQIKRFSWREIQLATDNFSDSNIIGQGGFGKVYKGVLSDNTKVAV 303

Query: 301 KRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
           KRL D Y PGGEAAF REV +ISVA+H+NLL+LIG+CTTSSERILVYP+MQNLSVA+ LR
Sbjct: 304 KRLSDCYIPGGEAAFHREVQIISVAVHRNLLRLIGFCTTSSERILVYPYMQNLSVAFHLR 363

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126743|ref|XP_002329462.1| predicted protein [Populus trichocarpa] gi|222870142|gb|EEF07273.1| predicted protein [Populus trichocarpa]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 248/360 (68%), Positives = 293/360 (81%), Gaps = 1/360 (0%)

Query: 1   MFGALHKCCPPSLMTKWLILVIFLNFGHSSREPDVEGEALIEVLKALNDTHGQFTDWNDH 60
           MFG      P  L+   LIL+ FL    S++EPD EG AL ++L ALND++ Q  +W+ +
Sbjct: 1   MFGVFSLWNPLKLVINCLILLNFLKITISTKEPDTEGNALRDLLLALNDSNRQI-NWDTN 59

Query: 61  FVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFL 120
            VSPCFSW+HV CRNG+V SL+L S GFSG +SP+I KL+FL +LELQ+N LSG LPD+L
Sbjct: 60  LVSPCFSWTHVICRNGHVESLSLNSLGFSGTLSPAIMKLEFLVTLELQNNSLSGPLPDYL 119

Query: 121 GSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTH 180
           G+M HLQ+LNLA+NKFSGSIP TW QLSNLK+LDLSSNNLTGRIP +LFSVA FNFT TH
Sbjct: 120 GNMVHLQNLNLASNKFSGSIPTTWGQLSNLKNLDLSSNNLTGRIPGKLFSVAMFNFTATH 179

Query: 181 LICGSSLEQPCMSRPSPPVSTSRTKLRIVVASASCGAFVLLSLGALFACRYQKLRKLKHD 240
           L CG SLE+PC+S     VSTS+++L+++  SASCGAF+LL L A+ A RY +  K K+D
Sbjct: 180 LACGLSLEEPCISGSPLRVSTSKSRLKVIATSASCGAFILLILVAVLAYRYHQFHKEKND 239

Query: 241 VFFDVAGEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAV 300
           +F DVAGEDD K++  QLRRFS RELQLATDNFSESNIIGQGG GKVYKG+LSDN KVAV
Sbjct: 240 IFVDVAGEDDRKITFGQLRRFSWRELQLATDNFSESNIIGQGGCGKVYKGILSDNMKVAV 299

Query: 301 KRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
           KRL DYYSPGGEAAFQREV LISVA HKNLL+L+G+CTTSSERILVYP+MQNLSVAYRLR
Sbjct: 300 KRLADYYSPGGEAAFQREVQLISVAFHKNLLKLVGFCTTSSERILVYPYMQNLSVAYRLR 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060473|ref|XP_002300217.1| predicted protein [Populus trichocarpa] gi|222847475|gb|EEE85022.1| predicted protein [Populus trichocarpa]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 242/360 (67%), Positives = 295/360 (81%), Gaps = 1/360 (0%)

Query: 1   MFGALHKCCPPSLMTKWLILVIFLNFGHSSREPDVEGEALIEVLKALNDTHGQFTDWNDH 60
           MFG      P  L+   L+L+ FL   +SS+EPD EG AL ++L ALND++GQ  DW+ +
Sbjct: 1   MFGVFSIRNPLKLVINCLVLLNFLQIINSSKEPDTEGGALRDLLLALNDSNGQI-DWDPN 59

Query: 61  FVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFL 120
            VSPC+SW++V C+NG+V+ L+L S G SG +SP+ITKLKFL SLEL++N+LSG+LPD+L
Sbjct: 60  LVSPCYSWTNVYCKNGHVVFLSLNSLGLSGTLSPAITKLKFLVSLELRNNNLSGSLPDYL 119

Query: 121 GSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTH 180
           G+M  L++LNLA+NKFSGSIP TW QLSNLK LD+SSNNLTGRIP +LFSVATFNFT T+
Sbjct: 120 GNMVQLKNLNLASNKFSGSIPDTWDQLSNLKFLDVSSNNLTGRIPDKLFSVATFNFTATY 179

Query: 181 LICGSSLEQPCMSRPSPPVSTSRTKLRIVVASASCGAFVLLSLGALFACRYQKLRKLKHD 240
           + CG S E+PC+SR   PVST + +L+++ ASASCGAF LL L  + A RYQ+  K K+D
Sbjct: 180 IACGLSFEEPCLSRSPLPVSTRKLRLKVIAASASCGAFGLLILLVVLAYRYQQFHKEKND 239

Query: 241 VFFDVAGEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAV 300
           +F DV+GEDD K+S  QLRRFS RELQLATDNFSESNIIGQGGFGKVYKG++SDN KVAV
Sbjct: 240 IFVDVSGEDDRKISFGQLRRFSWRELQLATDNFSESNIIGQGGFGKVYKGIISDNMKVAV 299

Query: 301 KRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
           KRL+DYYSPGG+AAF REV LISVA HKNLL+LIG+CTTSSERILVYP+MQNLSVAY LR
Sbjct: 300 KRLEDYYSPGGKAAFLREVQLISVAAHKNLLRLIGFCTTSSERILVYPYMQNLSVAYHLR 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512884|ref|XP_003525144.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g63710-like [Glycine max]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 235/352 (66%), Positives = 282/352 (80%), Gaps = 1/352 (0%)

Query: 10  PPSLMTKWLILVIFLNFGHSSREPDVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWS 69
           P  ++T+WLI +  L  G + ++PDVEGEAL++VL  LND++ Q TDW+   VSPCFSWS
Sbjct: 10  PLKILTRWLIFLTILQVGCAIKDPDVEGEALLDVLHFLNDSNKQITDWDSFLVSPCFSWS 69

Query: 70  HVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSL 129
           HVTCRNG+VISL L S GFSG +SPSITKLK+L+SLELQ+N+LSG LPD++ ++T LQ L
Sbjct: 70  HVTCRNGHVISLALASVGFSGTLSPSITKLKYLSSLELQNNNLSGPLPDYISNLTELQYL 129

Query: 130 NLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHLICGSSLEQ 189
           NLA+N F+GSIPA W +L NLKHLDLSSN LTG IPMQLFSV  FNF+ THL CG   EQ
Sbjct: 130 NLADNSFNGSIPANWGELPNLKHLDLSSNGLTGSIPMQLFSVPLFNFSDTHLQCGPGFEQ 189

Query: 190 PCMSRPSPPVSTSRTKLRIVVASASCGAFVLLSLGALFACRYQKLRKLK-HDVFFDVAGE 248
            C S+   P S  ++KL  +V  ASCGAF LL LGA+F  R+ +    K  DVF DV+GE
Sbjct: 190 SCASKSENPASAHKSKLAKIVRYASCGAFALLCLGAIFTYRHHRKHWRKSDDVFVDVSGE 249

Query: 249 DDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYS 308
           D+ K+   QLRRFS RELQLAT NFSE N+IGQGGFGKVYKGVLSDNTKVAVKRL DY++
Sbjct: 250 DESKIFFGQLRRFSWRELQLATKNFSEGNVIGQGGFGKVYKGVLSDNTKVAVKRLIDYHN 309

Query: 309 PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
           PGGEAAF+REV LISVA+H+NLL+LIG+CTT++ERILVYPFM+NLSVAYRLR
Sbjct: 310 PGGEAAFEREVQLISVAVHRNLLRLIGFCTTTTERILVYPFMENLSVAYRLR 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527105|ref|XP_003532154.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g63710-like [Glycine max]

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 232/351 (66%), Positives = 280/351 (79%)

Query: 10  PPSLMTKWLILVIFLNFGHSSREPDVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWS 69
           P  ++T+WLI +  L    + ++PDVEGEAL+++L  LND++ Q TDW+   VSPCFSWS
Sbjct: 10  PLKILTRWLIFLTILQVSCAIKDPDVEGEALLDLLHFLNDSNKQITDWDSFLVSPCFSWS 69

Query: 70  HVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSL 129
           HVTCRNG+VISL L S GFSG +SPSI KLK+L+SLELQ+N+LSG LPD++ ++T LQ L
Sbjct: 70  HVTCRNGHVISLALASVGFSGTLSPSIIKLKYLSSLELQNNNLSGPLPDYISNLTELQYL 129

Query: 130 NLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHLICGSSLEQ 189
           NLA+N F+GSIPA W ++ NLKHLDLSSN LTG IP QLFSV  FNFT T L CG   EQ
Sbjct: 130 NLADNNFNGSIPAKWGEVPNLKHLDLSSNGLTGSIPKQLFSVPLFNFTDTQLQCGPGFEQ 189

Query: 190 PCMSRPSPPVSTSRTKLRIVVASASCGAFVLLSLGALFACRYQKLRKLKHDVFFDVAGED 249
           PC S+   P S  ++KL  +V  ASCGAF LL LGA+F  R  +  + K DVF DV+GED
Sbjct: 190 PCASKSENPASAHKSKLAKIVRYASCGAFALLCLGAIFTYRQHQKHRRKIDVFVDVSGED 249

Query: 250 DCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSP 309
           + K+S  QLRRFS RELQLAT NFSE N+IGQGGFGKVYKGVLSDNTKVAVKRL DY++P
Sbjct: 250 ERKISFGQLRRFSWRELQLATKNFSEGNVIGQGGFGKVYKGVLSDNTKVAVKRLIDYHNP 309

Query: 310 GGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
           GGEAAF+REV LISVA+H+NLL+LIG+CTT++ERILVYPFM+NLSVAYRLR
Sbjct: 310 GGEAAFEREVQLISVAVHRNLLRLIGFCTTTTERILVYPFMENLSVAYRLR 360

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520193|ref|XP_003630385.1| Plasma membrane receptor-like kinase [Medicago truncatula] gi|194441092|gb|ACF70844.1| plasma membrane receptor-like kinase [Medicago truncatula] gi|355524407|gb|AET04861.1| Plasma membrane receptor-like kinase [Medicago truncatula]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 228/352 (64%), Positives = 287/352 (81%)

Query: 9   CPPSLMTKWLILVIFLNFGHSSREPDVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFSW 68
            P  ++ +W I ++ L    + ++PD+EGEAL+++L  LND++ Q  DW+ H VSPCFSW
Sbjct: 9   APFKILMRWFIFLVVLKLSSAIKDPDIEGEALLDLLNYLNDSNNQIQDWDSHLVSPCFSW 68

Query: 69  SHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQS 128
           SHVTCRNG+VISLTL S GFSG +SPSIT+LK+L +LELQ+N+LSG +PD++ ++T LQ 
Sbjct: 69  SHVTCRNGHVISLTLASIGFSGTLSPSITRLKYLVNLELQNNNLSGPIPDYISNLTDLQY 128

Query: 129 LNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHLICGSSLE 188
           LNLANN F+GSIP +W QLS+LK++DLSSN LTG IP QLFSV  FNF+ T L CGSS +
Sbjct: 129 LNLANNNFNGSIPVSWGQLSSLKNVDLSSNGLTGTIPTQLFSVPMFNFSDTPLDCGSSFD 188

Query: 189 QPCMSRPSPPVSTSRTKLRIVVASASCGAFVLLSLGALFACRYQKLRKLKHDVFFDVAGE 248
           QPC+S+   P ST+++KL   +  ASCGAFVLL LGA+F  R+ +  + K DVF DV GE
Sbjct: 189 QPCVSKSDHPASTNKSKLAKAMPYASCGAFVLLCLGAIFTYRHHQKIRHKSDVFVDVLGE 248

Query: 249 DDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYS 308
           D+ K+S  QLRRFS RELQLAT +FSESN+IGQGGFGKVYKGVLSDNTK+AVKRL DY++
Sbjct: 249 DESKISFGQLRRFSLRELQLATKSFSESNVIGQGGFGKVYKGVLSDNTKIAVKRLTDYHN 308

Query: 309 PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
           PGGEAAF+REV LISVA+H+NLL+LIG+CTTS+ERILVYPFM+NLSVAY+LR
Sbjct: 309 PGGEAAFEREVDLISVAVHRNLLRLIGFCTTSTERILVYPFMENLSVAYQLR 360

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793957|ref|XP_002864863.1| hypothetical protein ARALYDRAFT_496559 [Arabidopsis lyrata subsp. lyrata] gi|297310698|gb|EFH41122.1| hypothetical protein ARALYDRAFT_496559 [Arabidopsis lyrata subsp. lyrata]

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 224/362 (61%), Positives = 287/362 (79%), Gaps = 5/362 (1%)

Query: 3   GALHKCC----PPSLMTKWLILVIFLNFGHSSREPDVEGEALIEVLKALNDTHGQFTDWN 58
           G +H+ C       L+ +  + + F+    S+ +PD+EG AL+++  +LND+  +   W 
Sbjct: 16  GFIHRNCFRWNNQKLILQCFMALAFVGVTSSTTQPDIEGGALLQLRDSLNDSSNRL-KWT 74

Query: 59  DHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPD 118
             FVSPC+SWS+VTCR  +V++L L SNGF+G +SP+ITKLKFL +LELQ+N LSG LP+
Sbjct: 75  RDFVSPCYSWSYVTCRGQSVVALNLASNGFTGTLSPAITKLKFLVTLELQNNSLSGALPE 134

Query: 119 FLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTG 178
            LG+M +LQ+LNL+ N FSGSIPA+WSQLSNLKHLDLSSNNLTG IP Q FS+ TF+F+G
Sbjct: 135 SLGNMVNLQTLNLSMNSFSGSIPASWSQLSNLKHLDLSSNNLTGSIPTQFFSIPTFDFSG 194

Query: 179 THLICGSSLEQPCMSRPSPPVSTSRTKLRIVVASASCGAFVLLSLGALFACRYQKLRKLK 238
           T LICG SL QPC S    PV++S+ KLR +  +ASC A ++L LGA+    + ++R+ K
Sbjct: 195 TQLICGKSLNQPCSSSSRLPVTSSKKKLRDITLTASCVASIILFLGAMVMYHHHRVRQTK 254

Query: 239 HDVFFDVAGEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKV 298
           +D+FFDVAGEDD K+S  QLRRFS RE+QLATD+F+ESN+IGQGGFGKVY+G+L D TKV
Sbjct: 255 YDIFFDVAGEDDRKISFGQLRRFSLREIQLATDSFNESNLIGQGGFGKVYRGLLPDKTKV 314

Query: 299 AVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYR 358
           AVKRL DY+SPGGEAAFQRE+ LISVA+HKNLL+LIG+CTTSSERILVYP+M+NLSVAYR
Sbjct: 315 AVKRLADYFSPGGEAAFQREIQLISVAVHKNLLRLIGFCTTSSERILVYPYMENLSVAYR 374

Query: 359 LR 360
           LR
Sbjct: 375 LR 376

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177052|dbj|BAB10464.1| receptor-like protein kinase [Arabidopsis thaliana]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 219/338 (64%), Positives = 277/338 (81%), Gaps = 1/338 (0%)

Query: 23  FLNFGHSSREPDVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWSHVTCRNGNVISLT 82
           F+    S+ +PD+EG AL+++  +LND+  +   W   FVSPC+SWS+VTCR  +V++L 
Sbjct: 5   FVGITSSTTQPDIEGGALLQLRDSLNDSSNRL-KWTRDFVSPCYSWSYVTCRGQSVVALN 63

Query: 83  LGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPA 142
           L S+GF+G +SP+ITKLKFL +LELQ+N LSG LPD LG+M +LQ+LNL+ N FSGSIPA
Sbjct: 64  LASSGFTGTLSPAITKLKFLVTLELQNNSLSGALPDSLGNMVNLQTLNLSVNSFSGSIPA 123

Query: 143 TWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHLICGSSLEQPCMSRPSPPVSTS 202
           +WSQLSNLKHLDLSSNNLTG IP Q FS+ TF+F+GT LICG SL QPC S    PV++S
Sbjct: 124 SWSQLSNLKHLDLSSNNLTGSIPTQFFSIPTFDFSGTQLICGKSLNQPCSSSSRLPVTSS 183

Query: 203 RTKLRIVVASASCGAFVLLSLGALFACRYQKLRKLKHDVFFDVAGEDDCKVSLTQLRRFS 262
           + KLR +  +ASC A ++L LGA+    + ++R+ K+D+FFDVAGEDD K+S  QL+RFS
Sbjct: 184 KKKLRDITLTASCVASIILFLGAMVMYHHHRVRRTKYDIFFDVAGEDDRKISFGQLKRFS 243

Query: 263 CRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLI 322
            RE+QLATD+F+ESN+IGQGGFGKVY+G+L D TKVAVKRL DY+SPGGEAAFQRE+ LI
Sbjct: 244 LREIQLATDSFNESNLIGQGGFGKVYRGLLPDKTKVAVKRLADYFSPGGEAAFQREIQLI 303

Query: 323 SVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
           SVA+HKNLL+LIG+CTTSSERILVYP+M+NLSVAYRLR
Sbjct: 304 SVAVHKNLLRLIGFCTTSSERILVYPYMENLSVAYRLR 341

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
TAIR|locus:2160644	614	AT5G63710 [Arabidopsis thalian	0.913	0.565	0.620	1.6e-116
TAIR|locus:2145407	613	AT5G10290 [Arabidopsis thalian	0.744	0.461	0.510	2e-72
TAIR|locus:2040471	601	SERK5 "somatic embryogenesis r	0.892	0.564	0.394	1.1e-53
TAIR|locus:2013021	625	SERK1 "somatic embryogenesis r	0.742	0.451	0.416	3.1e-51
TAIR|locus:2026097	628	SERK2 "somatic embryogenesis r	0.742	0.449	0.419	2.2e-50
TAIR|locus:2061466	634	AT2G23950 [Arabidopsis thalian	0.731	0.438	0.418	5.8e-50
TAIR|locus:2118811	648	SARK "SENESCENCE-ASSOCIATED RE	0.739	0.433	0.414	7.4e-50
TAIR|locus:2040461	620	SERK4 "somatic embryogenesis r	0.734	0.45	0.428	3.2e-49
TAIR|locus:2146102	638	NIK1 "NSP-interacting kinase 1	0.731	0.435	0.413	6.7e-49
TAIR|locus:2036636	632	NIK3 "NSP-interacting kinase 3	0.739	0.444	0.394	1.1e-46

TAIR|locus:2160644 AT5G63710 [Arabidopsis thaliana (taxid:3702)]

 Score = 1148 (409.2 bits), Expect = 1.6e-116, P = 1.6e-116
 Identities = 216/348 (62%), Positives = 275/348 (79%)

Query:    13 LMTKWLILVIFLNFGHSSREPDVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWSHVT 72
             L+ +  + + F+    S+ +PD+EG AL+++  +LND+  +   W   FVSPC+SWS+VT
Sbjct:    30 LILQCFMALAFVGITSSTTQPDIEGGALLQLRDSLNDSSNRLK-WTRDFVSPCYSWSYVT 88

Query:    73 CRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLA 132
             CR  +V++L L S+GF+G +SP+ITKLKFL +LELQ+N LSG LPD LG+M +LQ+LNL+
Sbjct:    89 CRGQSVVALNLASSGFTGTLSPAITKLKFLVTLELQNNSLSGALPDSLGNMVNLQTLNLS 148

Query:   133 NNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHLICGSSLEQPCM 192
              N FSGSIPA+WSQLSNLKHLDLSSNNLTG IP Q FS+ TF+F+GT LICG SL QPC 
Sbjct:   149 VNSFSGSIPASWSQLSNLKHLDLSSNNLTGSIPTQFFSIPTFDFSGTQLICGKSLNQPCS 208

Query:   193 XXXXXXXXXXXXKLRIVVASASCGAFVLLSLGALFACRYQKLRKLKHDVFFDVAGEDDCK 252
                         KLR +  +ASC A ++L LGA+    + ++R+ K+D+FFDVAGEDD K
Sbjct:   209 SSSRLPVTSSKKKLRDITLTASCVASIILFLGAMVMYHHHRVRRTKYDIFFDVAGEDDRK 268

Query:   253 VSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGE 312
             +S  QL+RFS RE+QLATD+F+ESN+IGQGGFGKVY+G+L D TKVAVKRL DY+SPGGE
Sbjct:   269 ISFGQLKRFSLREIQLATDSFNESNLIGQGGFGKVYRGLLPDKTKVAVKRLADYFSPGGE 328

Query:   313 AAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
             AAFQRE+ LISVA+HKNLL+LIG+CTTSSERILVYP+M+NLSVAYRLR
Sbjct:   329 AAFQREIQLISVAVHKNLLRLIGFCTTSSERILVYPYMENLSVAYRLR 376

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2145407 AT5G10290 [Arabidopsis thaliana (taxid:3702)]

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 145/284 (51%), Positives = 194/284 (68%)

Query:    77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
             N+ +LTL  NG +G+I      L  L SL+L+DN L+G +P  +G++  LQ L L+ NK 
Sbjct:    95 NLKTLTLKGNGITGEIPEDFGNLTSLTSLDLEDNQLTGRIPSTIGNLKKLQFLTLSRNKL 154

Query:   137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHLICGSSLEQPCMXXXX 196
             +G+IP + + L NL +L L SN+L+G+IP  LF +  +NFT  +L CG     PC+    
Sbjct:   155 NGTIPESLTGLPNLLNLLLDSNSLSGQIPQSLFEIPKYNFTSNNLNCGGRQPHPCVSAVA 214

Query:   197 XXXXXXXXKLRIVVASASCGAFVLLSLGALFACRYQKLRKLKHDVFFDVAGEDDCKVSLT 256
                     K  I+    +    VL  +     C+  + +  + DVF DVAGE D +++  
Sbjct:   215 HSGDSSKPKTGIIAGVVAGVTVVLFGILLFLFCK-DRHKGYRRDVFVDVAGEVDRRIAFG 273

Query:   257 QLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQ 316
             QL+RF+ RELQLATDNFSE N++GQGGFGKVYKGVL DNTKVAVKRL D+ SPGG+AAFQ
Sbjct:   274 QLKRFAWRELQLATDNFSEKNVLGQGGFGKVYKGVLPDNTKVAVKRLTDFESPGGDAAFQ 333

Query:   317 REVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
             REV +ISVA+H+NLL+LIG+CTT +ER+LVYPFMQNLS+A+RLR
Sbjct:   334 REVEMISVAVHRNLLRLIGFCTTQTERLLVYPFMQNLSLAHRLR 377

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2040471 SERK5 "somatic embryogenesis receptor-like kinase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 141/357 (39%), Positives = 203/357 (56%)

Query:    17 WLILVIFLNFGHSSREPDVEGEALIEVLKALND---THGQFTDWNDHFVSPCFSWSHVTC 73
             WLIL  FL+F  S      + +ALI +  +L+    T+     WN   V+PC SW HVTC
Sbjct:    11 WLIL--FLDFV-SRVTGKTQVDALIALRSSLSSGDHTNNILQSWNATHVTPC-SWFHVTC 66

Query:    74 RNGNVIS-LTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLA 132
                N ++ L LGS   SG++ P + +L  L  LEL +N+++G +P+ LG +  L SL+L 
Sbjct:    67 NTENSVTRLDLGSANLSGELVPQLAQLPNLQYLELFNNNITGEIPEELGDLMELVSLDLF 126

Query:   133 NNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQL-------FSVATFNFTGTHLICGS 185
              N  SG IP++  +L  L+ L L +N+L+G IP  L         ++    +G   + GS
Sbjct:   127 ANNISGPIPSSLGKLGKLRFLRLYNNSLSGEIPRSLTALPLDVLDISNNRLSGDIPVNGS 186

Query:   186 SLEQPCMXXXXXXXXXXXXKLRIVVASASCGAFVLLSLGA--LFACRYQKLRKLKHDVFF 243
               +   M                  +  S    V ++ GA  LFA  +   RKL+   F 
Sbjct:   187 FSQFTSMSFANNKLRPRPASPSPSPSGTSAAIVVGVAAGAALLFALAWWLRRKLQGH-FL 245

Query:   244 DVAGEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRL 303
             DV  E+D +V L Q +RFS REL +AT+ FS+ N++G+G FG +YKG L+D+T VAVKRL
Sbjct:   246 DVPAEEDPEVYLGQFKRFSLRELLVATEKFSKRNVLGKGRFGILYKGRLADDTLVAVKRL 305

Query:   304 QDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
              +  + GGE  FQ EV +IS+A+H+NLL+L G+C T +ER+LVYP+M N SVA  LR
Sbjct:   306 NEERTKGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLR 362

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

TAIR|locus:2013021 SERK1 "somatic embryogenesis receptor-like kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 124/298 (41%), Positives = 177/298 (59%)

Query:    77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
             N+  L L SN  +G I  ++  L  L SL+L  N  SG +P+ LG ++ L+ L L NN  
Sbjct:    94 NLQYLELYSNNITGPIPSNLGNLTNLVSLDLYLNSFSGPIPESLGKLSKLRFLRLNNNSL 153

Query:   137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQ-LFSVAT-FNFTGTHLICGSSLEQPC--- 191
             +GSIP + + ++ L+ LDLS+N L+G +P    FS+ T  +F     +CG     PC   
Sbjct:   154 TGSIPMSLTNITTLQVLDLSNNRLSGSVPDNGSFSLFTPISFANNLDLCGPVTSHPCPGS 213

Query:   192 ---------MXXXXXXXXXXXXKLRIVVASASCGAFVLLSLGALFACRYQKLRKLKHDVF 242
                      +                +    + GA +L +  A+    +++ + L  D+F
Sbjct:   214 PPFSPPPPFIQPPPVSTPSGYGITGAIAGGVAAGAALLFAAPAIAFAWWRRRKPL--DIF 271

Query:   243 FDVAGEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKR 302
             FDV  E+D +V L QL+RFS RELQ+A+D FS  NI+G+GGFGKVYKG L+D T VAVKR
Sbjct:   272 FDVPAEEDPEVHLGQLKRFSLRELQVASDGFSNKNILGRGGFGKVYKGRLADGTLVAVKR 331

Query:   303 LQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
             L++  +PGGE  FQ EV +IS+A+H+NLL+L G+C T +ER+LVYP+M N SVA  LR
Sbjct:   332 LKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLR 389

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0042802 "identical protein binding" evidence=IPI

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=TAS

GO:0009556 "microsporogenesis" evidence=IGI;IMP

GO:0010152 "pollen maturation" evidence=IMP

GO:0043234 "protein complex" evidence=IPI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IGI;IMP

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0007030 "Golgi organization" evidence=IGI

GO:0010227 "floral organ abscission" evidence=IGI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009880 "embryonic pattern specification" evidence=RCA

GO:0010072 "primary shoot apical meristem specification" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010431 "seed maturation" evidence=RCA

GO:0016310 "phosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0051301 "cell division" evidence=RCA

TAIR|locus:2026097 SERK2 "somatic embryogenesis receptor-like kinase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 125/298 (41%), Positives = 173/298 (58%)

Query:    77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
             N+  L L SN  +G +   +  L  L SL+L  N  +G +PD LG +  L+ L L NN  
Sbjct:    97 NLQYLELYSNNITGPVPSDLGNLTNLVSLDLYLNSFTGPIPDSLGKLFKLRFLRLNNNSL 156

Query:   137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQ-LFSVAT-FNFTGTHLICGSSLEQPCMXX 194
             +G IP + + +  L+ LDLS+N L+G +P    FS+ T  +F     +CG    +PC   
Sbjct:   157 TGPIPMSLTNIMTLQVLDLSNNRLSGSVPDNGSFSLFTPISFANNLDLCGPVTSRPCPGS 216

Query:   195 XXXX------------XXXXXXKLRIVVASASCGAFVLLSLGALFACRYQKLRKLKHDVF 242
                                       +    + GA +L +  AL A  + + RK   + F
Sbjct:   217 PPFSPPPPFIPPPIVPTPGGYSATGAIAGGVAAGAALLFAAPAL-AFAWWRRRK-PQEFF 274

Query:   243 FDVAGEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKR 302
             FDV  E+D +V L QL+RFS RELQ+ATD+FS  NI+G+GGFGKVYKG L+D T VAVKR
Sbjct:   275 FDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGTLVAVKR 334

Query:   303 LQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
             L++  +PGGE  FQ EV +IS+A+H+NLL+L G+C T +ER+LVYP+M N SVA  LR
Sbjct:   335 LKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLR 392

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IGI;IMP

GO:0010152 "pollen maturation" evidence=IMP

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

TAIR|locus:2061466 AT2G23950 [Arabidopsis thaliana (taxid:3702)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 123/294 (41%), Positives = 168/294 (57%)

Query:    77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
             N+  ++L +N  SGKI P I  L  L +L+L +N  SG +P  +  +++LQ L L NN  
Sbjct:    99 NLRQVSLQNNNISGKIPPEICSLPKLQTLDLSNNRFSGEIPGSVNQLSNLQYLRLNNNSL 158

Query:   137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHLICGSSLEQPC----- 191
             SG  PA+ SQ+ +L  LDLS NNL G +P   F   TFN  G  LIC +SL + C     
Sbjct:   159 SGPFPASLSQIPHLSFLDLSYNNLRGPVPK--FPARTFNVAGNPLICKNSLPEICSGSIS 216

Query:   192 ---MXXXXXXXXXXXXKLRIVVASASCG--AFVLLSLGALFACRYQKLRKLKHDVFFDVA 246
                +             +  V    S G    V+LSLG  F    +K R+L      D  
Sbjct:   217 ASPLSVSLRSSSGRRTNILAVALGVSLGFAVSVILSLG--FIWYRKKQRRLTMLRISDK- 273

Query:   247 GEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDY 306
              +++  + L  LR F+ REL +ATD FS  +I+G GGFG VY+G   D T VAVKRL+D 
Sbjct:   274 -QEEGLLGLGNLRSFTFRELHVATDGFSSKSILGAGGFGNVYRGKFGDGTVVAVKRLKDV 332

Query:   307 YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
                 G + F+ E+ +IS+A+H+NLL+LIGYC +SSER+LVYP+M N SVA RL+
Sbjct:   333 NGTSGNSQFRTELEMISLAVHRNLLRLIGYCASSSERLLVYPYMSNGSVASRLK 386

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2118811 SARK "SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE" [Arabidopsis thaliana (taxid:3702)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 121/292 (41%), Positives = 168/292 (57%)

Query:    77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
             N+  ++L +N  SGKI P +  L  L +L+L +N  SG +P  +  ++ LQ L L NN  
Sbjct:   102 NLRQVSLQNNNISGKIPPELGFLPKLQTLDLSNNRFSGDIPVSIDQLSSLQYLRLNNNSL 161

Query:   137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHLICGSSLEQPCMXXXX 196
             SG  PA+ SQ+ +L  LDLS NNL+G +P   F   TFN  G  LIC S+  + C     
Sbjct:   162 SGPFPASLSQIPHLSFLDLSYNNLSGPVPK--FPARTFNVAGNPLICRSNPPEICSGSIN 219

Query:   197 XX-------XXXXXXKLRIVVA-SASCGAFVLLSLGALFACRYQKLRKLKHDVFFDVAGE 248
                              R+ +A S S G+ V+L L     C Y+K ++    +  +   E
Sbjct:   220 ASPLSVSLSSSSGRRSNRLAIALSVSLGSVVILVLALGSFCWYRKKQRRLLILNLNDKQE 279

Query:   249 DDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYS 308
             +  +  L  LR F+ REL + TD FS  NI+G GGFG VY+G L D T VAVKRL+D   
Sbjct:   280 EGLQ-GLGNLRSFTFRELHVYTDGFSSKNILGAGGFGNVYRGKLGDGTMVAVKRLKDING 338

Query:   309 PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
               G++ F+ E+ +IS+A+HKNLL+LIGYC TS ER+LVYP+M N SVA +L+
Sbjct:   339 TSGDSQFRMELEMISLAVHKNLLRLIGYCATSGERLLVYPYMPNGSVASKLK 390

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010150 "leaf senescence" evidence=IMP

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2040461 SERK4 "somatic embryogenesis receptor-like kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 123/287 (42%), Positives = 172/287 (59%)

Query:    77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
             N+  L L SN  +G+I   +  L  L SL+L  N +SG +P  LG +  L+ L L NN  
Sbjct:   100 NLQYLELYSNNITGEIPEELGDLVELVSLDLYANSISGPIPSSLGKLGKLRFLRLNNNSL 159

Query:   137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQ-LFSVAT-FNFTGTHLICGSSLEQPCMXX 194
             SG IP T + +  L+ LD+S+N L+G IP+   FS+ T  +F    L      E P    
Sbjct:   160 SGEIPMTLTSVQ-LQVLDISNNRLSGDIPVNGSFSLFTPISFANNSLT--DLPEPPPTST 216

Query:   195 XXXXXXXXXXKLRIVVASA-SCGAFVLLSLGALFACRYQKLRKLKHDVFFDVAGEDDCKV 253
                       ++   +A   + GA +L ++ A+    +  LR+   D FFDV  E+D +V
Sbjct:   217 SPTPPPPSGGQMTAAIAGGVAAGAALLFAVPAIAFAWW--LRRKPQDHFFDVPAEEDPEV 274

Query:   254 SLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEA 313
              L QL+RF+ REL +ATDNFS  N++G+GGFGKVYKG L+D   VAVKRL++  + GGE 
Sbjct:   275 HLGQLKRFTLRELLVATDNFSNKNVLGRGGFGKVYKGRLADGNLVAVKRLKEERTKGGEL 334

Query:   314 AFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
              FQ EV +IS+A+H+NLL+L G+C T +ER+LVYP+M N SVA  LR
Sbjct:   335 QFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLR 381

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0060548 "negative regulation of cell death" evidence=IMP

GO:1900140 "regulation of seedling development" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0008219 "cell death" evidence=IGI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IGI

GO:0010150 "leaf senescence" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2146102 NIK1 "NSP-interacting kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 124/300 (41%), Positives = 170/300 (56%)

Query:    77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
             N+  + L +N   GKI   I +L  L +L+L DN   G +P  +G +  LQ L L NN  
Sbjct:   106 NLRIVLLQNNNIKGKIPAEIGRLTRLETLDLSDNFFHGEIPFSVGYLQSLQYLRLNNNSL 165

Query:   137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHLICGSSLEQPCMXXXX 196
             SG  P + S ++ L  LDLS NNL+G +P   F+  TF+  G  LIC +  E  C     
Sbjct:   166 SGVFPLSLSNMTQLAFLDLSYNNLSGPVPR--FAAKTFSIVGNPLICPTGTEPDCNGTTL 223

Query:   197 X--------------XXXXXXXKLRIVVASASCGAFVLLSLGA-LFACRYQKLRKLKHDV 241
                                   K+ I V S S G   L+ +   LF    Q+  +   + 
Sbjct:   224 IPMSMNLNQTGVPLYAGGSRNHKMAIAVGS-SVGTVSLIFIAVGLFLWWRQRHNQ---NT 279

Query:   242 FFDVA-GEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAV 300
             FFDV  G    +VSL  LRRF  RELQ+AT+NFS  N++G+GG+G VYKG+L D+T VAV
Sbjct:   280 FFDVKDGNHHEEVSLGNLRRFGFRELQIATNNFSSKNLLGKGGYGNVYKGILGDSTVVAV 339

Query:   301 KRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
             KRL+D  + GGE  FQ EV +IS+A+H+NLL+L G+C T +E++LVYP+M N SVA R++
Sbjct:   340 KRLKDGGALGGEIQFQTEVEMISLAVHRNLLRLYGFCITQTEKLLVYPYMSNGSVASRMK 399

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0051607 "defense response to virus" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2036636 NIK3 "NSP-interacting kinase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 119/302 (39%), Positives = 176/302 (58%)

Query:    74 RNGNVI---SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLN 130
             R GN+    S+ L +N  +G I  +I +L+ L SL+L +N  +G +P  LG + +L  L 
Sbjct:    93 RIGNLTYLQSVVLQNNAITGPIPETIGRLEKLQSLDLSNNSFTGEIPASLGELKNLNYLR 152

Query:   131 LANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHLICG------ 184
             L NN   G+ P + S++  L  +D+S NNL+G +P    S  TF   G  LICG      
Sbjct:   153 LNNNSLIGTCPESLSKIEGLTLVDISYNNLSGSLPK--VSARTFKVIGNALICGPKAVSN 210

Query:   185 -SSLEQPCMXXXX----XXXXXXXXKLRIV-VASASCGAFVLLSLGALFACRYQKLRKLK 238
              S++ +P                   + +   AS S   FV  + G     RY++ ++  
Sbjct:   211 CSAVPEPLTLPQDGPDESGTRTNGHHVALAFAASFSAAFFVFFTSGMFLWWRYRRNKQ-- 268

Query:   239 HDVFFDVAGEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKV 298
               +FFDV  + D +VSL  L+R++ +EL+ AT++F+  NI+G+GG+G VYKG L+D T V
Sbjct:   269 --IFFDVNEQYDPEVSLGHLKRYTFKELRSATNHFNSKNILGRGGYGIVYKGHLNDGTLV 326

Query:   299 AVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYR 358
             AVKRL+D    GGE  FQ EV  IS+A+H+NLL+L G+C+++ ERILVYP+M N SVA R
Sbjct:   327 AVKRLKDCNIAGGEVQFQTEVETISLALHRNLLRLRGFCSSNQERILVYPYMPNGSVASR 386

Query:   359 LR 360
             L+
Sbjct:   387 LK 388

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0048653 "anther development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	380
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-23
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-17
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	4e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-14
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	1e-14
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	1e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-13
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	2e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-13
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	1e-12
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	1e-11
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	9e-11
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	3e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-10
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	2e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-09
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	6e-09
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	2e-08
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	2e-08
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	2e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-08
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	8e-08
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	2e-07
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	3e-07
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	5e-07
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	6e-07
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	8e-07
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	8e-07
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	1e-06
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	2e-06
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	3e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-06
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	5e-06
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	7e-06
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	7e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-05
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	1e-05
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	1e-05
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	2e-05
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	2e-05
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	3e-05
cd05087	269	cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of t	3e-05
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	3e-05
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	3e-05
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	6e-05
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	6e-05
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	7e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	7e-05
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	7e-05
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	1e-04
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	1e-04
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	1e-04
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	3e-04
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	3e-04
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	4e-04
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	4e-04
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	6e-04
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	6e-04
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	6e-04
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	8e-04
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	0.001
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	0.001
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	0.001
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	0.002
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	0.002
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	0.002
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	0.002
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	0.003
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	0.003
cd05091	283	cd05091, PTKc_Ror2, Catalytic domain of the Protei	0.003
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	0.003
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	0.004
cd05086	268	cd05086, PTKc_Aatyk2, Catalytic domain of the Prot	0.004
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	0.004
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	0.004

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score =  100 bits (251), Expect = 4e-23
 Identities = 66/211 (31%), Positives = 101/211 (47%), Gaps = 23/211 (10%)

Query: 36  EGEALIEVLKALNDTHGQFT-----DWN-DHFVSPCFSWSHVTCRNGNVIS------LTL 83
           E + L+E + AL              WN D  V     WS   C+  +         L L
Sbjct: 366 ESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGL 425

Query: 84  GSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPAT 143
            + G  G I   I+KL+ L S+ L  N + G +P  LGS+T L+ L+L+ N F+GSIP +
Sbjct: 426 DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485

Query: 144 WSQLSNLKHLDLSSNNLTGRIPM----QLFSVATFNFTGTHLICGSSLEQPCMSRPSPPV 199
             QL++L+ L+L+ N+L+GR+P     +L   A+FNFT    +CG    + C   P   V
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC--GPHLSV 543

Query: 200 STSRTKLRIVVASASCGAFVLLSLGALFACR 230
                  +I +A     AF+ L + A+   +
Sbjct: 544 GA-----KIGIAFGVSVAFLFLVICAMCWWK 569

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 98.8 bits (246), Expect = 3e-22
 Identities = 98/345 (28%), Positives = 151/345 (43%), Gaps = 60/345 (17%)

Query: 74  RNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLAN 133
            +  + +L L  N FSG +   +  L  L  L+L +N LSG +PD L S   L SL+L++
Sbjct: 473 GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532

Query: 134 NKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSV--------------ATFNFTGT 179
           N+ SG IPA++S++  L  LDLS N L+G IP  L +V               +   TG 
Sbjct: 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGA 592

Query: 180 HLICGSSL----EQPCMSRPS---PPVS-TSRTKLRIVVASASCGAFVLLSLGALFACRY 231
            L   +S        C    +   PP     +T       + + GAF++L+L A F   +
Sbjct: 593 FLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTPSWWFYITCTLGAFLVLALVA-FGFVF 651

Query: 232 QKLRK---LKHDVFFDVAGED--------DCKVSLTQLRRFSCRELQLATDNFSESNIIG 280
            + R    LK      V  ED        D KVS    +  +  ++  +     E N+I 
Sbjct: 652 IRGRNNLELKR-----VENEDGTWELQFFDSKVS----KSITINDILSSL---KEENVIS 699

Query: 281 QGGFGKVYKGVLSDN-TKVAVKRLQDYYS-PGGEAAFQREVHLISVAIHKNLLQLIGYCT 338
           +G  G  YKG    N  +  VK + D  S P  E A   ++       H N+++LIG C 
Sbjct: 700 RGKKGASYKGKSIKNGMQFVVKEINDVNSIPSSEIADMGKLQ------HPNIVKLIGLCR 753

Query: 339 TSSERILVYPFMQNLSVAYRLR-----VSHKIYTKII-SLSSLHC 377
           +     L++ +++  +++  LR        KI   I  +L  LHC
Sbjct: 754 SEKGAYLIHEYIEGKNLSEVLRNLSWERRRKIAIGIAKALRFLHC 798

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 94.5 bits (235), Expect = 6e-21
 Identities = 60/195 (30%), Positives = 93/195 (47%), Gaps = 32/195 (16%)

Query: 6   HKCCPPSLMTKWLILVIFLNFGHSSREPDVEGEALIEVLKALNDTHGQFTDWNDHFVSPC 65
            + CP  +   + +   FLNF     E   E E L+    ++ND     ++WN      C
Sbjct: 6   PQHCPYLIFMLFFL---FLNFSMLHAE---ELELLLSFKSSINDPLKYLSNWNSS-ADVC 58

Query: 66  FSWSHVTCRNGN-VISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFL---- 120
             W  +TC N + V+S+ L     SGKIS +I +L ++ ++ L +N LSG +PD +    
Sbjct: 59  -LWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTS 117

Query: 121 -------------------GSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLT 161
                              GS+ +L++L+L+NN  SG IP      S+LK LDL  N L 
Sbjct: 118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177

Query: 162 GRIPMQLFSVATFNF 176
           G+IP  L ++ +  F
Sbjct: 178 GKIPNSLTNLTSLEF 192

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 82.2 bits (203), Expect = 6e-17
 Identities = 43/94 (45%), Positives = 56/94 (59%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            +ISL L  N  SG+I   + +L+ L  L L  N+ +G +P  L S+  LQ L L +NKF
Sbjct: 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           SG IP    + +NL  LDLS+NNLTG IP  L S
Sbjct: 345 SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378

Length = 968

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 74.1 bits (183), Expect = 4e-15
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 5/79 (6%)

Query: 279 IGQGGFGKVYKGVL-----SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQL 333
           +G+G FG+VYKG L        TKVAVK L++  S      F  E  ++    H N+++L
Sbjct: 7   LGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPNIVRL 66

Query: 334 IGYCTTSSERILVYPFMQN 352
           +G CT      +V  +M  
Sbjct: 67  LGVCTQGEPLYIVTEYMPG 85

Length = 258

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 76.4 bits (188), Expect = 5e-15
 Identities = 50/126 (39%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 81  LTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSI 140
           L LG N   GKI  S+T L  L  L L  N L G +P  LG M  L+ + L  N  SG I
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228

Query: 141 PATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHLICGSSLEQPCMSRPSPPVS 200
           P     L++L HLDL  NNLTG IP  L ++    +          L Q  +S P PP  
Sbjct: 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL--------FLYQNKLSGPIPPSI 280

Query: 201 TSRTKL 206
            S  KL
Sbjct: 281 FSLQKL 286

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 75.7 bits (186), Expect = 1e-14
 Identities = 38/88 (43%), Positives = 52/88 (59%)

Query: 81  LTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSI 140
           L L  N  SG I PSI  L+ L SL+L DN LSG +P+ +  + +L+ L+L +N F+G I
Sbjct: 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324

Query: 141 PATWSQLSNLKHLDLSSNNLTGRIPMQL 168
           P   + L  L+ L L SN  +G IP  L
Sbjct: 325 PVALTSLPRLQVLQLWSNKFSGEIPKNL 352

Length = 968

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 72.6 bits (179), Expect = 1e-14
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 4/80 (5%)

Query: 277 NIIGQGGFGKVYKGVLSDN----TKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQ 332
             +G+G FG+VYKG L       T+VAVK L++  S      F +E  ++    H N+++
Sbjct: 1   KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVR 60

Query: 333 LIGYCTTSSERILVYPFMQN 352
           L+G CT      LV  +M+ 
Sbjct: 61  LLGVCTEEEPLYLVLEYMEG 80

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 72.6 bits (179), Expect = 1e-14
 Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 8/108 (7%)

Query: 278 IIGQGGFGKVYKGVLSDN-----TKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQ 332
            +G+G FG+VYKG L         +VAVK L++  S      F RE  ++    H N+++
Sbjct: 6   KLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNIVK 65

Query: 333 LIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKIISLSSLHCFSL 380
           L+G CT     ++V  +M    +   LR +     K +SLS L  F+L
Sbjct: 66  LLGVCTEEEPLMIVMEYMPGGDLLDYLRKNRP---KELSLSDLLSFAL 110

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 71.8 bits (176), Expect = 2e-13
 Identities = 47/116 (40%), Positives = 61/116 (52%), Gaps = 14/116 (12%)

Query: 83  LGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPA 142
           LG N  SG+I   I  L  L  L+L  N+L+G +P  LG++ +LQ L L  NK SG IP 
Sbjct: 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP 278

Query: 143 TWSQLSNLKHLDLSSNNLTGRIP-----------MQLFSVATFNFTGTHLICGSSL 187
           +   L  L  LDLS N+L+G IP           + LFS    NFTG   +  +SL
Sbjct: 279 SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN---NFTGKIPVALTSL 331

Length = 968

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 69.1 bits (170), Expect = 2e-13
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 5/80 (6%)

Query: 278 IIGQGGFGKVYKGVLSDN-----TKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQ 332
            +G+G FG+VYKG L         +VAVK L++  S      F RE  ++    H N+++
Sbjct: 6   KLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNVVK 65

Query: 333 LIGYCTTSSERILVYPFMQN 352
           L+G CT      +V  +M+ 
Sbjct: 66  LLGVCTEEEPLYIVMEYMEG 85

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 71.0 bits (174), Expect = 3e-13
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 83  LGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPA 142
           L  N FSG++    TKL  +  L++ +N+L G +      M  LQ L+LA NKF G +P 
Sbjct: 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470

Query: 143 TWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           +      L++LDLS N  +G +P +L S
Sbjct: 471 S-FGSKRLENLDLSRNQFSGAVPRKLGS 497

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 70.6 bits (173), Expect = 4e-13
 Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 81  LTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSI 140
           L + +N   G+I+     +  L  L L  N   G LPD  GS   L++L+L+ N+FSG++
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAV 491

Query: 141 PATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           P     LS L  L LS N L+G IP +L S
Sbjct: 492 PRKLGSLSELMQLKLSENKLSGEIPDELSS 521

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 69.5 bits (170), Expect = 8e-13
 Identities = 36/99 (36%), Positives = 56/99 (56%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           N+ +L L +N  SG+I   I     L  L+L  N L G +P+ L ++T L+ L LA+N+ 
Sbjct: 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFN 175
            G IP    Q+ +LK + L  NNL+G IP ++  + + N
Sbjct: 201 VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 69.5 bits (170), Expect = 9e-13
 Identities = 41/91 (45%), Positives = 53/91 (58%)

Query: 81  LTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSI 140
           L L  N  +G I  S+  LK L  L L  N LSG +P  + S+  L SL+L++N  SG I
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300

Query: 141 PATWSQLSNLKHLDLSSNNLTGRIPMQLFSV 171
           P    QL NL+ L L SNN TG+IP+ L S+
Sbjct: 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSL 331

Length = 968

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 67.5 bits (165), Expect = 1e-12
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 7/91 (7%)

Query: 279 IGQGGFGKVYKGVLS------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQ 332
           +G+G FGKV+ G         D   VAVK L++  S      F+RE  L++   H+N+++
Sbjct: 13  LGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVK 72

Query: 333 LIGYCTTSSERILVYPFMQNLSVAYRLRVSH 363
             G CT     I+V+ +M++  +   LR SH
Sbjct: 73  FYGVCTEGDPPIMVFEYMEHGDLNKFLR-SH 102

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 63.0 bits (154), Expect = 1e-11
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 279 IGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYC 337
           +G+GGFG VY         KVA+K ++   S        RE+ ++    H N+++L G  
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVF 60

Query: 338 TTSSERILVYPFMQNLSV 355
              +   LV  + +  S+
Sbjct: 61  EDENHLYLVMEYCEGGSL 78

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 61.4 bits (150), Expect = 9e-11
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 1/85 (1%)

Query: 277 NIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIG 335
             +G+G FGKVY          VA+K ++            RE+ ++    H N+++L  
Sbjct: 5   EKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIVRLYD 64

Query: 336 YCTTSSERILVYPFMQNLSVAYRLR 360
                 +  LV  + +   +   L+
Sbjct: 65  VFEDEDKLYLVMEYCEGGDLFDLLK 89

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 3/92 (3%)

Query: 278 IIGQGGFGKVYKGV-LSDNTKVAVKRLQ-DYYSPGGEAAFQREVHLISVAIHKNLLQLIG 335
            +G G FG VYK         VAVK L+        +   +RE+ ++    H N+++LI 
Sbjct: 6   KLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNIVRLID 65

Query: 336 YCTTSSERILVYPFMQNLSVAYRLRVSHKIYT 367
                    LV  + +   +   L       +
Sbjct: 66  AFEDKDHLYLVMEYCEGGDLFDYLS-RGGPLS 96

Length = 260

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.0 bits (148), Expect = 4e-10
 Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 8/113 (7%)

Query: 74  RNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLAN 133
           ++ N+  L L +N  +G+I   +     L  L L  N L G +P  LG+   L+ + L +
Sbjct: 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413

Query: 134 NKFSGSIPATWSQLSNLKHLDLSSNNLTGRI--------PMQLFSVATFNFTG 178
           N FSG +P+ +++L  +  LD+S+NNL GRI         +Q+ S+A   F G
Sbjct: 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG 466

Length = 968

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 8/94 (8%)

Query: 265 ELQLATDNFSESNIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQRE 318
           E+ L+   F E   +G+G FGKVYKG L         T VA+K L++   P  +  F++E
Sbjct: 1   EIPLSAVRFLEE--LGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQE 58

Query: 319 VHLISVAIHKNLLQLIGYCTTSSERILVYPFMQN 352
             L+S   H N++ L+G CT      +++ ++ +
Sbjct: 59  AELMSDLQHPNIVCLLGVCTKEQPTCMLFEYLAH 92

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 31/96 (32%), Positives = 50/96 (52%)

Query: 81  LTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSI 140
           L L SN FSG+I  ++ K   L  L+L  N+L+G +P+ L S  +L  L L +N   G I
Sbjct: 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI 396

Query: 141 PATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNF 176
           P +     +L+ + L  N+ +G +P +   +    F
Sbjct: 397 PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF 432

Length = 968

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 55.9 bits (135), Expect = 6e-09
 Identities = 30/82 (36%), Positives = 43/82 (52%)

Query: 279 IGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCT 338
           IG+G FG VYKGVL  NT+VAVK  +    P  +  F +E  ++    H N+++LIG C 
Sbjct: 3   IGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCV 62

Query: 339 TSSERILVYPFMQNLSVAYRLR 360
                 +V   +   S+   LR
Sbjct: 63  QKQPIYIVMELVPGGSLLTFLR 84

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 6/79 (7%)

Query: 279 IGQGGFGKVYK----GVLS--DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQ 332
           IGQG FG+V++    G+L     T VAVK L++  S   +A FQRE  L++   H N+++
Sbjct: 13  IGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVK 72

Query: 333 LIGYCTTSSERILVYPFMQ 351
           L+G C       L++ +M 
Sbjct: 73  LLGVCAVGKPMCLLFEYMA 91

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 4/88 (4%)

Query: 277 NIIGQGGFGKVYKGVLSDNTK----VAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQ 332
            +IG G FG+V +G L    K    VA+K L+   S      F  E  ++    H N+++
Sbjct: 10  KVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIR 69

Query: 333 LIGYCTTSSERILVYPFMQNLSVAYRLR 360
           L G  T S   +++  +M+N S+   LR
Sbjct: 70  LEGVVTKSRPVMIITEYMENGSLDKFLR 97

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 54.2 bits (130), Expect = 2e-08
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 14/113 (12%)

Query: 279 IGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYC 337
           IG+G FG+V+ G L +DNT VAVK  ++   P  +A F +E  ++    H N+++LIG C
Sbjct: 3   IGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 62

Query: 338 TTSSERILVYPFMQ-------------NLSVAYRLRVSHKIYTKIISLSSLHC 377
           T      +V   +Q              L V   +++       +  L S HC
Sbjct: 63  TQKQPIYIVMELVQGGDFLTFLRTEGPRLKVKELIQMVENAAAGMEYLESKHC 115

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 49.1 bits (118), Expect = 5e-08
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 102 LASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNL 160
           L SL+L +N L+         + +L+ L+L+ N  +   P  +S L +L+ LDLS NNL
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 52.8 bits (127), Expect = 8e-08
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 267 QLATDNFSESNIIGQGGFGKVYKGVLS----DNTK--VAVKRLQDYYSPGGEAAFQREVH 320
           ++  D+ +    +G G FG+VY+G+      D  +  VAVK L +  S   E+ F  E  
Sbjct: 2   EVPRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEAL 61

Query: 321 LISVAIHKNLLQLIGYCTTSSERILVYPFM 350
           ++S   H+N+++LIG       R ++   M
Sbjct: 62  IMSKFNHQNIVRLIGVSFERLPRFILLELM 91

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 51.2 bits (122), Expect = 2e-07
 Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 3/74 (4%)

Query: 278 IIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYC 337
           ++G+G FG+V+KG L D T VAVK  ++      +  F  E  ++    H N+++LIG C
Sbjct: 2   LLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVC 61

Query: 338 TTSSERILVYPFMQ 351
           T   +R  +Y  M+
Sbjct: 62  T---QRQPIYIVME 72

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 279 IGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEA-AFQREVHLISVAIHKNLLQLIGYC 337
           IG+G FG V  G      KVAVK L+D       A AF  E  +++   H NL+QL+G  
Sbjct: 14  IGKGEFGDVMLGDYR-GQKVAVKCLKDD---STAAQAFLAEASVMTTLRHPNLVQLLGVV 69

Query: 338 TTSSERILVYPFMQNLSVAYRLR 360
              +   +V  +M   S+   LR
Sbjct: 70  LQGNPLYIVTEYMAKGSLVDYLR 92

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 50.3 bits (120), Expect = 5e-07
 Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 279 IGQGGFGKVYKG---VLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIG 335
           IG G FGKV  G         +V VK L+   +P  +  F +EV       H N+LQ +G
Sbjct: 3   IGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLG 62

Query: 336 YCTTSSERILVYPF 349
            C  S   +LV  F
Sbjct: 63  QCIESIPYLLVLEF 76

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 49.9 bits (119), Expect = 6e-07
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 279 IGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCT 338
           IG G FG V+ G   +  KVA+K +++      E  F  E  ++    H  L+QL G CT
Sbjct: 12  IGSGQFGLVWLGYWLEKRKVAIKTIREGAM--SEEDFIEEAQVMMKLSHPKLVQLYGVCT 69

Query: 339 TSSERILVYPFMQNLSVAYRLRVSHKIYTK 368
             S   LV+ FM++  ++  LR     +++
Sbjct: 70  ERSPICLVFEFMEHGCLSDYLRAQRGKFSQ 99

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 49.6 bits (118), Expect = 8e-07
 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 8/99 (8%)

Query: 279 IGQGGFGKVYKGVLS------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQ 332
           +G+G FGKV+           D   VAVK L++  S      FQRE  L++V  H+++++
Sbjct: 13  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA-SESARQDFQREAELLTVLQHQHIVR 71

Query: 333 LIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKIIS 371
             G CT     ++V+ +M++  +   LR SH    KI++
Sbjct: 72  FYGVCTEGRPLLMVFEYMRHGDLNRFLR-SHGPDAKILA 109

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 279 IGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPG--GEAAFQREVHLISVAIHKNLLQLIGY 336
           +G G FG+V+ G  +  TKVAVK L+    PG     AF +E  ++    H  L+QL   
Sbjct: 14  LGAGQFGEVWMGTWNGTTKVAVKTLK----PGTMSPEAFLQEAQIMKKLRHDKLVQLYAV 69

Query: 337 CTTSSERILVYPFMQNLS 354
           C+      +V  +M   S
Sbjct: 70  CSEEEPIYIVTEYMSKGS 87

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 9/108 (8%)

Query: 277 NIIGQGGFGKVYKGVLSD-------NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKN 329
           N +G G FG+VY+G  +D         +VAVK L+   +   +  F +E HL+S   H N
Sbjct: 1   NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPN 60

Query: 330 LLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSH--KIYTKIISLSSL 375
           +++L+G C  +  + ++   M+   +   LR +   +    +++L  L
Sbjct: 61  IVKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKEL 108

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 279 IGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPG--GEAAFQREVHLISVAIHKNLLQLIGY 336
           +G G FG+V++G+ ++ T VAVK L+    PG      F  E  ++    H  L+QL   
Sbjct: 14  LGAGQFGEVWEGLWNNTTPVAVKTLK----PGTMDPKDFLAEAQIMKKLRHPKLIQLYAV 69

Query: 337 CTTSSERILVYPFMQNLS 354
           CT      +V   M+  S
Sbjct: 70  CTLEEPIYIVTELMKYGS 87

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 47.9 bits (115), Expect = 3e-06
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 272 NFSESNIIGQGGFGKVYKGVLSDNTK-VAVKRLQDYYSPGGEA-AFQREVHLISVAIHKN 329
            ++   ++G+G FG VY  +  D  + +AVK ++       E  A +RE+ ++S   H N
Sbjct: 1   EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPN 60

Query: 330 LLQLIGYCTTSSERILVYPFM 350
           +++  G      E+  +  F+
Sbjct: 61  IVRYYG-SERDEEKNTLNIFL 80

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 4/86 (4%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKF-LASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
           N+ SL L +N  +  I P I  LK  L  L+L DN +  +LP  L ++ +L++L+L+ N 
Sbjct: 117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174

Query: 136 FSGSIPATWSQLSNLKHLDLSSNNLT 161
            S  +P   S LSNL +LDLS N ++
Sbjct: 175 LS-DLPKLLSNLSNLNNLDLSGNKIS 199

Length = 394

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 6/78 (7%)

Query: 278 IIGQGGFGKVYKGV---LSDNTK--VAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQ 332
           ++G G FG VYKGV     +  K  VA+K L++  SP        E ++++   H ++++
Sbjct: 14  VLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVR 73

Query: 333 LIGYCTTSSERILVYPFM 350
           L+G C +S    L+   M
Sbjct: 74  LLGICLSSQ-VQLITQLM 90

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 46.9 bits (111), Expect = 7e-06
 Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 7/91 (7%)

Query: 265 ELQLATDNFSESNIIGQGGFGKVYKGVL----SDNTK-VAVKRLQDYYSPGGEAAFQREV 319
           EL L+   F E   +G+  FGK+YKG L     D+ + VA+K L+D  +P     FQ+E 
Sbjct: 1   ELPLSAVRFMEE--LGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEA 58

Query: 320 HLISVAIHKNLLQLIGYCTTSSERILVYPFM 350
            L++   H N++ L+G  T      +++ ++
Sbjct: 59  SLMAELHHPNIVCLLGVVTQEQPVCMLFEYL 89

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 279 IGQGGFGKVYKGV-LSDNTK---VAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLI 334
           +G G FG V KGV L  + K   VAVK L+  +   G+  F RE  +++   H  +++LI
Sbjct: 3   LGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLI 62

Query: 335 GYC 337
           G C
Sbjct: 63  GVC 65

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 3/86 (3%)

Query: 75  NGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANN 134
             N+  L L  N     +   +  L  L +L+L  NDLS  LP  L ++++L +L+L+ N
Sbjct: 139 KSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGN 196

Query: 135 KFSGSIPATWSQLSNLKHLDLSSNNL 160
           K S  +P     LS L+ LDLS+N++
Sbjct: 197 KIS-DLPPEIELLSALEELDLSNNSI 221

Length = 394

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 272 NFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGE-AAFQREVHLISVAIHKN 329
           N+   ++IG+G FG VYKG+ L     VA+K++           +  +E+ L+    H N
Sbjct: 1   NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPN 60

Query: 330 LLQLIGYCTTSSERILVYPFMQNLSVA 356
           +++ IG   TS    ++  + +N S+ 
Sbjct: 61  IVKYIGSIETSDSLYIILEYAENGSLR 87

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 6/94 (6%)

Query: 278 IIGQGGFGKVYKGV------LSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLL 331
            +G+G FGKV K         +  T VAVK L++  S         E +L+    H +++
Sbjct: 7   TLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVI 66

Query: 332 QLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKI 365
           +L G C+     +L+  + +  S+   LR S K+
Sbjct: 67  KLYGACSQDGPLLLIVEYAKYGSLRSFLRESRKV 100

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 12/90 (13%)

Query: 261 FSCRELQLATDNFSESNIIGQGGFGKVYKG---VLSDNT--KVAVKRLQDYYSPGGEAAF 315
           F  R L+           +G+G FGKV       L DNT  +VAVK L         + F
Sbjct: 1   FEKRHLKF-------IKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDF 53

Query: 316 QREVHLISVAIHKNLLQLIGYCTTSSERIL 345
           +RE+ ++    H+N+++  G C     R L
Sbjct: 54  EREIEILRTLDHENIVKYKGVCEKPGGRSL 83

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 11/81 (13%)

Query: 277 NIIGQGGFGKVYKGVLSD-NTKVAVKRLQDYYSPG----GEAAFQREVHLISVAIHKNLL 331
           + +G G +G+VY+GV    +  VAVK L++          EAA  +E+       H NL+
Sbjct: 12  HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIK------HPNLV 65

Query: 332 QLIGYCTTSSERILVYPFMQN 352
           QL+G CT      ++  FM  
Sbjct: 66  QLLGVCTREPPFYIITEFMTY 86

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 13/113 (11%)

Query: 277 NIIGQGGFGKVYKGV-LSDNTKVAVKRLQ-DYYSPGGEAAFQREVHLISVAIHKNLLQLI 334
             IG+G +G+VYK         VA+K+++ +    G      RE+ L+    H N+++L 
Sbjct: 5   AQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLK 64

Query: 335 GYCT--TSSERILVYPFMQN------LSVAYRLRVSH-KIYTK--IISLSSLH 376
              T        +V+ +M +       S   +   S  K Y K  +  L  LH
Sbjct: 65  EIVTSKGKGSIYMVFEYMDHDLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLH 117

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 279 IGQGGFGKVYKG-VLSD--NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIG 335
           IG G FGKV  G V S     +V VK L+   S   +  F  E        H NLLQ +G
Sbjct: 3   IGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLG 62

Query: 336 YCTTSSERILVYPFMQ 351
            CT  +  +LV  F  
Sbjct: 63  QCTEVTPYLLVMEFCP 78

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells. Aatyk1 has been implicated in neural differentiation, and is a regulator of the Na-K-2Cl cotransporter, a membrane protein involved in cell proliferation and survival, epithelial transport, and blood pressure control. The function of Aatyk3 is still unknown. Length = 269

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 277 NIIGQGGFGKVYKGVLSDN----TKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQ 332
            +IG+G FG VY G L D+       AVK L           F +E  ++    H N+L 
Sbjct: 1   RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLS 60

Query: 333 LIGYC-TTSSERILVYPFMQ 351
           L+G C  +    ++V P+M+
Sbjct: 61  LLGICLPSEGSPLVVLPYMK 80

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 274 SESNIIGQGGFGKVYKGVLS----DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKN 329
           ++  +IG G FG+V++G+L         VA+K L+  Y+      F  E  ++    H N
Sbjct: 8   TKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHN 67

Query: 330 LLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
           +++L G  T     +++  +M+N ++   LR
Sbjct: 68  IIRLEGVVTKFKPAMIITEYMENGALDKYLR 98

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 3/89 (3%)

Query: 273 FSESNIIGQGGFGKVYKGVLSDNTKVAVKRL-QDYYSPGGEAAFQREVHLISVAIHKNLL 331
           F+    +G G FG+V++G+  +  +VA+K L  D      +  FQ+EV  +    HK+L+
Sbjct: 8   FTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQD--FQKEVQALKRLRHKHLI 65

Query: 332 QLIGYCTTSSERILVYPFMQNLSVAYRLR 360
            L   C+      ++   M+  S+   LR
Sbjct: 66  SLFAVCSVGEPVYIITELMEKGSLLAFLR 94

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 11/86 (12%)

Query: 278 IIGQGGFGKVYKGVLS--DNT--KVAVKRLQ-DYYSPGGEAAFQREVHLISVAIHKNLLQ 332
           I+G+G FG V +G LS  D +  KVAVK ++ D ++      F  E   +    H N+++
Sbjct: 6   ILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMK 65

Query: 333 LIGYCTTSSER------ILVYPFMQN 352
           LIG C  +S        +++ PFM++
Sbjct: 66  LIGVCFEASSLQKIPKPMVILPFMKH 91

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 43.7 bits (103), Expect = 7e-05
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 278 IIGQGGFGKVYKGVLSDNTK----VAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQL 333
           +IG G FG+V +G L    K    VA+K L+  Y+      F  E  ++    H N++ L
Sbjct: 11  VIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHL 70

Query: 334 IGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKI 369
            G  T S   +++  FM+N ++   LR +   +T I
Sbjct: 71  EGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTVI 106

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 39.4 bits (93), Expect = 7e-05
 Identities = 17/38 (44%), Positives = 27/38 (71%), Gaps = 2/38 (5%)

Query: 124 THLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLT 161
           T+L++L+L+NN+ +  +P   S L NL+ LDLS N +T
Sbjct: 1   TNLETLDLSNNQIT-DLPP-LSNLPNLETLDLSGNKIT 36

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 43.7 bits (103), Expect = 7e-05
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 7/96 (7%)

Query: 279 IGQGGFGKVYKGVLSDNTKVAVKRL-QDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYC 337
           +G G FG+V+ G  + +TKVA+K L Q   SP    AF  E +L+    H  L++L  Y 
Sbjct: 14  LGAGQFGEVWMGYYNGHTKVAIKSLKQGSMSP---EAFLAEANLMKQLQHPRLVRL--YA 68

Query: 338 TTSSERI-LVYPFMQNLSVAYRLRVSHKIYTKIISL 372
             + E I ++  +M+N S+   L+    I   I  L
Sbjct: 69  VVTQEPIYIITEYMENGSLVDFLKTPEGIKLTINKL 104

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 7/89 (7%)

Query: 268 LATDNFSESNIIGQGGFGKVYKGVL---SDNTK--VAVKRLQDYYSPGGEAAFQREVHLI 322
           L    F +  ++G G FG VYKG+     +  K  VA+K L++  SP        E +++
Sbjct: 4   LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM 63

Query: 323 SVAIHKNLLQLIGYCTTSSERIL--VYPF 349
           +   + ++ +L+G C TS+ +++  + PF
Sbjct: 64  ASVDNPHVCRLLGICLTSTVQLITQLMPF 92

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 9/80 (11%)

Query: 279 IGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPG--GEAAFQREVHLISVAIHKNLLQLIGY 336
           +G G FG+V+ G  + NTKVAVK L+    PG     +F  E  ++    H  L+QL  Y
Sbjct: 14  LGNGQFGEVWMGTWNGNTKVAVKTLK----PGTMSPESFLEEAQIMKKLRHDKLVQL--Y 67

Query: 337 CTTSSERI-LVYPFMQNLSV 355
              S E I +V  +M   S+
Sbjct: 68  AVVSEEPIYIVTEYMSKGSL 87

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 9/97 (9%)

Query: 279 IGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPG--GEAAFQREVHLISVAIHKNLLQLIGY 336
           +GQG FG+V+ G  +  T+VA+K L+    PG     AF +E  ++    H+ L+QL  Y
Sbjct: 14  LGQGCFGEVWMGTWNGTTRVAIKTLK----PGTMSPEAFLQEAQVMKKLRHEKLVQL--Y 67

Query: 337 CTTSSERI-LVYPFMQNLSVAYRLRVSHKIYTKIISL 372
              S E I +V  +M   S+   L+     Y ++  L
Sbjct: 68  AVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQL 104

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 267 QLATDNFSESNIIGQGGFGKVYKGVL----SDNTKVAVKRLQDYYSPGGEAAFQREVHLI 322
           ++  ++ +    IG+G FG VY+GV     ++   VAVK  ++  SP     F +E +++
Sbjct: 2   EIQREDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIM 61

Query: 323 SVAIHKNLLQLIGYCT 338
               H ++++LIG  T
Sbjct: 62  RQFDHPHIVKLIGVIT 77

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 5/61 (8%)

Query: 125 HLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLF----SVATFNFTGTH 180
           +L+SL+L+NN+ +      +  L NLK LDLS NNLT  I  + F    S+ + + +G +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 181 L 181
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 279 IGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQ 332
           +G+G FGKV+           D   VAVK L+D  S      F RE  L++   H+++++
Sbjct: 13  LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA-SDNARKDFHREAELLTNLQHEHIVK 71

Query: 333 LIGYCTTSSERILVYPFMQNLSVAYRLR 360
             G C      I+V+ +M++  +   LR
Sbjct: 72  FYGVCVEGDPLIMVFEYMKHGDLNKFLR 99

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 279 IGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAA--FQREVH-LISVAIHKNLLQLIG 335
           +G+G FG+VY     D   VA+K L        +    F RE+  L S+    N+++L  
Sbjct: 8   LGEGSFGEVYLAR--DRKLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYD 65

Query: 336 YCTTSSERILVYPFMQNLSVAYRLRVSHK 364
           +        LV  ++   S+   L+   +
Sbjct: 66  FFQDEGSLYLVMEYVDGGSLEDLLKKIGR 94

Length = 384

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 7/80 (8%)

Query: 279 IGQGGFGKVYKG------VLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQ 332
           +G+G FGKV+           D   VAVK L+D  +      FQRE  L++   H+++++
Sbjct: 13  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDP-TLAARKDFQREAELLTNLQHEHIVK 71

Query: 333 LIGYCTTSSERILVYPFMQN 352
             G C      I+V+ +M++
Sbjct: 72  FYGVCGDGDPLIMVFEYMKH 91

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 6/79 (7%)

Query: 279 IGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEA--AFQREVHLISVAIHKNLLQLIGY 336
           +G G FG+V+ G  +++TKVAVK L+    PG  +  AF  E +L+    H  L++L   
Sbjct: 14  LGAGQFGEVWMGYYNNSTKVAVKTLK----PGTMSVQAFLEEANLMKTLQHDKLVRLYAV 69

Query: 337 CTTSSERILVYPFMQNLSV 355
            T      ++  +M   S+
Sbjct: 70  VTKEEPIYIITEYMAKGSL 88

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 272 NFSESNIIGQGGFGKVYKGVLS------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVA 325
           N  E   +G+G FG+V+             T V VK LQ       ++ F+RE+ +    
Sbjct: 6   NLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKL 65

Query: 326 IHKNLLQLIGYC 337
            HKN+++L+G C
Sbjct: 66  SHKNVVRLLGLC 77

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 13/82 (15%)

Query: 276 SNIIGQGGFGKVYKGV-LSDNTKVAVK--RLQDYYSPGGEAAFQ---REVHLISVAIHKN 329
            N IG G FGKVY  V L     +AVK  R+QD          +    E+ ++ +  H N
Sbjct: 5   GNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQD----NDPKTIKEIADEMKVLELLKHPN 60

Query: 330 LLQLIGYCTTSSERILVYPFMQ 351
              L+ Y      R  VY FM+
Sbjct: 61  ---LVKYYGVEVHREKVYIFME 79

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 41.0 bits (97), Expect = 6e-04
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 279 IGQGGFGKVYKGV-LSDNTKVAVKRL-QDYYSPGGEAAFQREVH-LISVAIHKNLLQL 333
           +G G FG VY          VA+K++ + +YS   E    REV  L  +  H N+++L
Sbjct: 7   LGDGTFGSVYLARNKETGELVAIKKMKKKFYSW-EECMNLREVKSLRKLNEHPNIVKL 63

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 40.4 bits (94), Expect = 8e-04
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 277 NIIGQGGFGKVYKGVLSDN---TKVAVKRLQDYYSPGGEAAFQREVH-LISVAIHKNLLQ 332
           ++IG+G FG+V K  +  +      A+KR+++Y S      F  E+  L  +  H N++ 
Sbjct: 13  DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 72

Query: 333 LIGYC 337
           L+G C
Sbjct: 73  LLGAC 77

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 4/96 (4%)

Query: 278 IIGQGGFGKVYKGVLSDNTK----VAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQL 333
           +IG G FG+V  G L    K    VA+K L+  Y+      F  E  ++    H N++ L
Sbjct: 11  VIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHL 70

Query: 334 IGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKI 369
            G  T S   ++V  +M+N S+   LR     +T I
Sbjct: 71  EGVVTKSKPVMIVTEYMENGSLDAFLRKHDGQFTVI 106

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 278 IIGQGGFGKVYKGVL-----SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQ 332
           ++G G FG VYKG+      +    VA+K L +   P     F  E  +++   H +L++
Sbjct: 14  VLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVR 73

Query: 333 LIGYCTTSSERIL 345
           L+G C + + +++
Sbjct: 74  LLGVCLSPTIQLV 86

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 273 FSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEA-----AFQREVHLISVAIH 327
           +++  ++G+G +G VY G+ +    +AVK+++   S    A       Q EV L+    H
Sbjct: 2   WTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKH 61

Query: 328 KNLLQLIGYC 337
            N++Q +G C
Sbjct: 62  VNIVQYLGTC 71

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 271 DNFSESNIIGQGGFGKVYKGVLSDNT-----KVAVKRLQDYYSPGGEAAFQREVHLISVA 325
           D  + S+++ +G FG+++ G+L D       +V VK ++D+ S        +E  L+   
Sbjct: 6   DRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGL 65

Query: 326 IHKNLLQLIGYCTTSSERILV-YPFM 350
            H+N+L ++  C    E   V YP+M
Sbjct: 66  SHQNILPILHVCIEDGEPPFVLYPYM 91

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 39.3 bits (91), Expect = 0.002
 Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 9/97 (9%)

Query: 279 IGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPG--GEAAFQREVHLISVAIHKNLLQLIGY 336
           +GQG FG+V+ G  +  TKVA+K L+    PG     AF +E  ++    H  L+ L  Y
Sbjct: 14  LGQGCFGEVWMGTWNGTTKVAIKTLK----PGTMMPEAFLQEAQIMKKLRHDKLVPL--Y 67

Query: 337 CTTSSERI-LVYPFMQNLSVAYRLRVSHKIYTKIISL 372
              S E I +V  FM   S+   L+     Y K+  L
Sbjct: 68  AVVSEEPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQL 104

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 279 IGQGGFGKVYKG-VLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYC 337
           IG+GGFG+VYK        +VA+K +    S   +     E+ ++    H N+++  G  
Sbjct: 8   IGKGGFGEVYKARHKRTGKEVAIKVI-KLESKEKKEKIINEIQILKKCKHPNIVKYYGSY 66

Query: 338 TTSSERILVYPFMQNLSVA 356
               E  +V  F    S+ 
Sbjct: 67  LKKDELWIVMEFCSGGSLK 85

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 2/95 (2%)

Query: 279 IGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCT 338
           +G G FG V+ G      KVA+K + +      E  F  E  ++    H  L+QL G CT
Sbjct: 12  LGSGQFGVVHLGKWRAQIKVAIKAINE--GAMSEEDFIEEAKVMMKLSHPKLVQLYGVCT 69

Query: 339 TSSERILVYPFMQNLSVAYRLRVSHKIYTKIISLS 373
                 +V  FM+N  +   LR      +K + LS
Sbjct: 70  QQKPLYIVTEFMENGCLLNYLRQRQGKLSKDMLLS 104

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 36 EGEALIEVLKALN-DTHGQFTDWNDHFVSPCFSWSHVTC 73
          + +AL+    +LN D  G  + WN     PC SW+ VTC
Sbjct: 4  DRDALLAFKSSLNGDPSGALSSWNPSSSDPC-SWTGVTC 41

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 30/86 (34%), Positives = 55/86 (63%), Gaps = 4/86 (4%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
            L L +N    ++  S++ LK L+ LEL +N     LP+ +G++++L++L+L+NN+   S
Sbjct: 213 ELDLSNNSII-ELLSSLSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNNQ--IS 268

Query: 140 IPATWSQLSNLKHLDLSSNNLTGRIP 165
             ++   L+NL+ LDLS N+L+  +P
Sbjct: 269 SISSLGSLTNLRELDLSGNSLSNALP 294

Length = 394

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 16/83 (19%)

Query: 279 IGQGGFGKVYKGVLSD------NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNL-- 330
           +GQG FG VY+G+          T+VA+K + +  S      F     L   ++ K    
Sbjct: 14  LGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEF-----LNEASVMKEFNC 68

Query: 331 ---LQLIGYCTTSSERILVYPFM 350
              ++L+G  +T    ++V   M
Sbjct: 69  HHVVRLLGVVSTGQPTLVVMELM 91

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 38.9 bits (90), Expect = 0.003
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 10/84 (11%)

Query: 279 IGQGGFGKVYKGVLSDNT---KVAVKRLQDYYSPGGEAA-FQREVHLISVAIHKNLLQLI 334
           +G+G FG V +G L+ +    KVAVK ++       E   F  E   +    H N+++LI
Sbjct: 7   LGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLI 66

Query: 335 GYCTTSSER------ILVYPFMQN 352
           G C  + E       +++ PFM++
Sbjct: 67  GVCLQTVESEGYPSPVVILPFMKH 90

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

 Score = 38.9 bits (90), Expect = 0.003
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 265 ELQLATDNFSESNIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQRE 318
           E+ L+T  F E   +G+  FGKVYKG L           VA+K L+D         F+ E
Sbjct: 1   EINLSTVRFMEE--LGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHE 58

Query: 319 VHLISVAIHKNLLQLIGYCTTSSERILVYPF 349
             + S   H N++ L+G  T      +++ +
Sbjct: 59  AMMRSRLQHPNIVCLLGVVTKEQPLSMIFSY 89

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)

Query: 279 IGQGGFGKVYKGVLSDNTK-VAVKR--LQDYYSPGGEAAFQ--REVHLISVAIHKNLLQL 333
           +G G FG VY+G+  D+    AVK   L D    G EA  Q  +E+ L+S   H N++Q 
Sbjct: 8   LGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQY 67

Query: 334 IGYCTTSSERILVY 347
           +G      + + ++
Sbjct: 68  LG-TEREEDNLYIF 80

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 269 ATDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKR-LQDYYSPGGEAAFQREVHLISVAI 326
              ++     +G+G FG+VYK   +     VA+K+ L      G      RE+ ++    
Sbjct: 6   KLRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLK 65

Query: 327 HKNLLQLI 334
           H N++ LI
Sbjct: 66  HPNVVPLI 73

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|133217 cd05086, PTKc_Aatyk2, Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 279 IGQGGFGKVYKGVLSDNTKVA---VKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIG 335
           IG G FGKV    +  +T VA   VK L+   S   +  F ++     +  H N+LQ +G
Sbjct: 3   IGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLG 62

Query: 336 YCTTSSERILVYPF 349
            C  +   +LV+ +
Sbjct: 63  QCVEAIPYLLVFEY 76

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage spermatogenesis. Although it is classified as a tyr kinase based on sequence similarity and the phylogenetic tree, Aatyk2 has been characterized as a serine/threonine kinase. Length = 268

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 2/95 (2%)

Query: 279 IGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCT 338
           +G G FG V+ G       VA+K +++      E  F  E  ++    H NL+QL G CT
Sbjct: 12  LGSGQFGVVHLGKWRGKIDVAIKMIRE--GAMSEDDFIEEAKVMMKLSHPNLVQLYGVCT 69

Query: 339 TSSERILVYPFMQNLSVAYRLRVSHKIYTKIISLS 373
                 +V  +M N  +   LR           L 
Sbjct: 70  KQRPIFIVTEYMANGCLLNYLRERKGKLGTEWLLD 104

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 38.1 bits (88), Expect = 0.004
 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 5/73 (6%)

Query: 278 IIGQGGFGKVYKGVL---SDNTK--VAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQ 332
           ++G G FG VYKG+     +N K  VA+K L++  SP        E ++++      + +
Sbjct: 14  VLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCR 73

Query: 333 LIGYCTTSSERIL 345
           L+G C TS+ +++
Sbjct: 74  LLGICLTSTVQLV 86

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	380
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN03150	623	hypothetical protein; Provisional	99.93
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.91
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.8
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.79
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.76
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.75
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.72
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.7
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.7
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.69
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.69
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.69
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.68
KOG3653	534	consensus Transforming growth factor beta/activin	99.66
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.64
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.64
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.63
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.61
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.61
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.6
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.6
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.59
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.59
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.59
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.58
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.58
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.58
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.58
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.58
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.58
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.58
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.57
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.57
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.57
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.56
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.56
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.56
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.56
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.56
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.56
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.55
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.54
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.54
KOG0198	313	consensus MEKK and related serine/threonine protei	99.54
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.54
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.54
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.53
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.53
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.53
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.53
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.53
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.53
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.53
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.53
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.53
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.53
KOG0610	459	consensus Putative serine/threonine protein kinase	99.53
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.52
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.52
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.52
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.52
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.52
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.52
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.52
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.52
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.51
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.51
KOG0586	596	consensus Serine/threonine protein kinase [General	99.51
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.51
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.51
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.51
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.51
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.51
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.5
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.5
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.5
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.5
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.5
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.5
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.5
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.5
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.5
KOG0578	550	consensus p21-activated serine/threonine protein k	99.5
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.5
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.49
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.49
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.49
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.49
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.49
KOG0605	550	consensus NDR and related serine/threonine kinases	99.49
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.49
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.49
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.49
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.49
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.49
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.48
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.48
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.48
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.48
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.48
PHA02988	283	hypothetical protein; Provisional	99.48
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.48
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.48
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.48
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.48
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.48
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.47
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.47
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.47
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.47
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.47
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.47
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.47
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.47
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.47
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.47
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.47
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.46
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.46
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.46
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.46
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.46
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.46
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.46
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.46
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.46
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.46
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.46
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.46
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.46
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.46
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.45
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.45
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.45
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.45
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.45
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.45
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.45
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.45
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.45
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.45
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.45
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.45
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.45
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.45
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.45
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.45
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.44
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.44
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.44
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.44
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.44
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.44
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.44
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.44
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.44
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.44
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.44
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.44
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.44
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.44
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.44
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.44
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.44
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.44
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.43
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.43
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.43
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.43
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.43
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.43
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.43
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.43
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.43
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.43
PLN03150	623	hypothetical protein; Provisional	99.43
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.43
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.43
KOG0589	426	consensus Serine/threonine protein kinase [General	99.43
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.43
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.43
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.43
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.43
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.43
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.43
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.42
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.42
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.42
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.42
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.42
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.42
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.42
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.42
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.42
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.42
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.42
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.42
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.42
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.42
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.42
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.42
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.42
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.42
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.42
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.42
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.41
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.41
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.41
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.41
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.41
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.41
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.41
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.41
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.41
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.41
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.41
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.41
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.41
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.41
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.41
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.41
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.41
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.41
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.41
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.41
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.4
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.4
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.4
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.4
PTZ00267	478	NIMA-related protein kinase; Provisional	99.4
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.4
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.4
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.4
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.4
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.4
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.4
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.4
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.4
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.4
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.4
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.39
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.39
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.39
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.39
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.39
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.39
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.39
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.39
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.38
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.38
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.38
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.38
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.38
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.38
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.38
PHA03212	391	serine/threonine kinase US3; Provisional	99.38
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.38
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.37
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.37
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.37
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.37
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.37
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.37
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.37
PLN00009	294	cyclin-dependent kinase A; Provisional	99.36
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.36
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.36
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.36
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.36
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.36
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.36
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.36
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.36
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.36
PRK09188	365	serine/threonine protein kinase; Provisional	99.36
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.35
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.35
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.35
PTZ00283	496	serine/threonine protein kinase; Provisional	99.35
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.35
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.35
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.35
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.35
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.35
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.35
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.34
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.34
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.34
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.34
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.34
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.34
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.33
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.33
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.33
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.32
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.32
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.32
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.32
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.31
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.31
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.31
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.31
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.31
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.31
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.31
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.31
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.31
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.3
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.3
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.3
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.3
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.3
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.29
PTZ00036	440	glycogen synthase kinase; Provisional	99.29
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.29
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.29
PHA03211	461	serine/threonine kinase US3; Provisional	99.28
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.28
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.28
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.28
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.28
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.28
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.27
PHA03209	357	serine/threonine kinase US3; Provisional	99.27
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.27
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.27
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.27
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.26
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.26
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.26
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.26
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.26
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.25
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.25
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.25
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.25
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.25
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.24
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.24
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.24
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.24
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.23
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.22
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.22
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.22
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.22
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.21
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.21
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.21
PHA03207	392	serine/threonine kinase US3; Provisional	99.21
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.21
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.2
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.2
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.19
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.19
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.19
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.18
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.17
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.17
KOG0584	632	consensus Serine/threonine protein kinase [General	99.17
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.17
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.16
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.16
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.16
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.15
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.15
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.15
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.15
PTZ00284	467	protein kinase; Provisional	99.14
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.13
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.12
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.12
PRK10345	210	hypothetical protein; Provisional	99.11
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.1
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.1
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.09
PHA03210	501	serine/threonine kinase US3; Provisional	99.07
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.06
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.05
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.04
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.03
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.03
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.02
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.02
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	98.99
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	98.99
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	98.98
KOG1152	772	consensus Signal transduction serine/threonine kin	98.97
PRK14879	211	serine/threonine protein kinase; Provisional	98.96
KOG0695	593	consensus Serine/threonine protein kinase [Signal	98.94
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.93
PRK09605	535	bifunctional UGMP family protein/serine/threonine	98.92
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.92
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	98.9
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	98.88
KOG0596	677	consensus Dual specificity; serine/threonine and t	98.86
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.85
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	98.83
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	98.82
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.81
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.79
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	98.78
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.78
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.77
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.76
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	98.75
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.75
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	98.74
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.73
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	98.72
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	98.71
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.71
KOG1167	418	consensus Serine/threonine protein kinase of the C	98.69
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	98.68
KOG0696	683	consensus Serine/threonine protein kinase [Signal	98.67
smart00090	237	RIO RIO-like kinase.	98.66
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	98.65
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	98.64
KOG1027	903	consensus Serine/threonine protein kinase and endo	98.63
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.61
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.61
PHA02882	294	putative serine/threonine kinase; Provisional	98.6
PRK12274	218	serine/threonine protein kinase; Provisional	98.55
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	98.54
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	98.52
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.52
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.47
KOG1290	590	consensus Serine/threonine protein kinase [Signal	98.47
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.45
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	98.43
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	98.42
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	98.41
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.39
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.39
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.38
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.36
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.34
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.31
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.29
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.29
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.29
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	98.26
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	98.26
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.26
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.24
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	98.24
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.23
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	98.2
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.2
COG0515	384	SPS1 Serine/threonine protein kinase [General func	98.18
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.16
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.15
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.15
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	98.12
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.09
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	97.96
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	97.92
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	97.87
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	97.87
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.84
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	97.8
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	97.74
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	97.71
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	97.68
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.61
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.6
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.56
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.55
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.21
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.06
KOG0590	601	consensus Checkpoint kinase and related serine/thr	96.98
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.98
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.89
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.89
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	96.84
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.83
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	96.67
KOG0473	326	consensus Leucine-rich repeat protein [Function un	96.65
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.52
KOG1243	690	consensus Protein kinase [General function predict	96.42
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.34
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	96.28
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	96.25
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.23
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.11
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	95.98
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	95.84
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.8
PLN02876	822	acyl-CoA dehydrogenase	95.75
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	95.58
PRK15386	426	type III secretion protein GogB; Provisional	95.46
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.46
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.45
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	95.22
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.1
PRK15386	426	type III secretion protein GogB; Provisional	94.93
PRK10593	297	hypothetical protein; Provisional	94.84
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	94.74
COG0661	517	AarF Predicted unusual protein kinase [General fun	94.62

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=7.7e-36  Score=321.74  Aligned_cols=286  Identities=24%  Similarity=0.416  Sum_probs=172.1

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +++.|+|++|.++|.+|..++.+++|++|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+..+.+|+.||++
T Consensus       500 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls  579 (968)
T PLN00113        500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS  579 (968)
T ss_pred             ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEecc
Confidence            45556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCcccccCccc--cccccccccCCCccccCCCCC---CCCCCCCCCCCcccccceeEEEeechhhHHHHHHHHHHHHHHH
Q 016905          157 SNNLTGRIPMQ--LFSVATFNFTGTHLICGSSLE---QPCMSRPSPPVSTSRTKLRIVVASASCGAFVLLSLGALFACRY  231 (380)
Q Consensus       157 ~N~l~g~~p~~--~~~~~~~~~~gN~~lc~~~~~---~~c~~~~~~~~~~~~~~~~~ii~~i~~~~~~ll~~~~~~~~~~  231 (380)
                      +|+++|.+|..  +..+....+.||+.+|+.+..   .+|...      .......++++ +++++++++++++++++++
T Consensus       580 ~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  652 (968)
T PLN00113        580 HNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRV------RKTPSWWFYIT-CTLGAFLVLALVAFGFVFI  652 (968)
T ss_pred             CCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCccc------cccceeeeehh-HHHHHHHHHHHHHHHHHHH
Confidence            66666666642  333455678888888875421   233211      01112222222 2222222222222223333


Q ss_pred             HHhhhcccccccccCCCCcccccc-cccceeCHHHHHHHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCC
Q 016905          232 QKLRKLKHDVFFDVAGEDDCKVSL-TQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSP  309 (380)
Q Consensus       232 ~r~k~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~  309 (380)
                      +++++.+.+............... ...+.++++++   ...++..++||+|+||.||+|+. .++..||||++..... 
T Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-  728 (968)
T PLN00113        653 RGRNNLELKRVENEDGTWELQFFDSKVSKSITINDI---LSSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNS-  728 (968)
T ss_pred             HhhhcccccccccccccccccccccccchhhhHHHH---HhhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCcc-
Confidence            322211111100000000000000 01122344444   34577788999999999999998 6789999999853221 


Q ss_pred             chHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCCChhhhcccc------cccceeeeeecceee
Q 016905          310 GGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVS------HKIYTKIISLSSLHC  377 (380)
Q Consensus       310 ~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~GsL~~~L~~~------~~~~~~~~aL~yLH~  377 (380)
                          ....|++.+++++|||||+++|+|..++..++|||||++|+|.++++.-      +...+++.|++|||.
T Consensus       729 ----~~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~l~~~~~~~i~~~ia~~L~yLH~  798 (968)
T PLN00113        729 ----IPSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRNLSWERRRKIAIGIAKALRFLHC  798 (968)
T ss_pred             ----ccHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCCCCCcHHHHHhcCCHHHHHHHHHHHHHHHHHhcc
Confidence                1235688999999999999999999999999999999999999999742      122458999999993

>PLN03150 hypothetical protein; Provisional

Probab=99.93  E-value=3.6e-25  Score=226.26  Aligned_cols=159  Identities=36%  Similarity=0.616  Sum_probs=140.3

Q ss_pred             CCCCCchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC----CceeeEecCC------CEEEEEeCCCCCccccchhHhC
Q 016905           29 SSREPDVEGEALIEVLKALNDTHGQFTDWNDHFVSPCF----SWSHVTCRNG------NVISLTLGSNGFSGKISPSITK   98 (380)
Q Consensus        29 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~w~~~~~~~c~----~w~gv~c~~~------~l~~l~L~~n~l~g~~p~~~~~   98 (380)
                      ...+.+.|+.||+.+|.++.++..  .+|.+   +||.    .|.||.|+..      .++.|+|++|.++|.+|++++.
T Consensus       366 ~~~t~~~~~~aL~~~k~~~~~~~~--~~W~g---~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~  440 (623)
T PLN03150        366 ESKTLLEEVSALQTLKSSLGLPLR--FGWNG---DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISK  440 (623)
T ss_pred             ccccCchHHHHHHHHHHhcCCccc--CCCCC---CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhC
Confidence            446677899999999999976542  48974   5664    6999999632      4899999999999999999999


Q ss_pred             CccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECcCCcccccCccccccc----ccc
Q 016905           99 LKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSV----ATF  174 (380)
Q Consensus        99 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~----~~~  174 (380)
                      +++|+.|+|++|+|+|.+|..++.+++|+.|||++|+|+|.+|..++++++|+.|||++|+|+|.+|..+...    ..+
T Consensus       441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l  520 (623)
T PLN03150        441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF  520 (623)
T ss_pred             CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999887643    467


Q ss_pred             ccCCCccccCCCCCCCCC
Q 016905          175 NFTGTHLICGSSLEQPCM  192 (380)
Q Consensus       175 ~~~gN~~lc~~~~~~~c~  192 (380)
                      ++.+|+.+|+.+....|.
T Consensus       521 ~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        521 NFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             EecCCccccCCCCCCCCc
Confidence            899999999876556664

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=9.1e-25  Score=208.87  Aligned_cols=121  Identities=49%  Similarity=0.702  Sum_probs=107.7

Q ss_pred             ccceeCHHHHHHHhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceee
Q 016905          257 QLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGY  336 (380)
Q Consensus       257 ~~~~~~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~  336 (380)
                      ..+.|+++++..||++|+..++||+|+||.||+|.+++|+.||||++......+ .++|.+|++++++++|||+|+|+||
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~-~~eF~~Ei~~ls~l~H~Nlv~LlGy  139 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQG-EREFLNEVEILSRLRHPNLVKLLGY  139 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcc-hhHHHHHHHHHhcCCCcCcccEEEE
Confidence            456799999999999999999999999999999999999999999986543332 5679999999999999999999999


Q ss_pred             eeCCC-ceeEEeecccCCChhhhcccccc---c--------ceeeeeecceeee
Q 016905          337 CTTSS-ERILVYPFMQNLSVAYRLRVSHK---I--------YTKIISLSSLHCF  378 (380)
Q Consensus       337 ~~~~~-~~~lV~Ey~~~GsL~~~L~~~~~---~--------~~~~~aL~yLH~~  378 (380)
                      |.+.+ +.+||||||+||||.++|+....   .        ..++.||+|||..
T Consensus       140 C~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~  193 (361)
T KOG1187|consen  140 CLEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEG  193 (361)
T ss_pred             EecCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccC
Confidence            99998 49999999999999999998654   1        2389999999974

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.80  E-value=4.2e-19  Score=191.97  Aligned_cols=132  Identities=39%  Similarity=0.692  Sum_probs=104.0

Q ss_pred             CCchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCceeeEecC-CCEEEEEeCCCCCccccchhHhCCccCCeEEcCCC
Q 016905           32 EPDVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWSHVTCRN-GNVISLTLGSNGFSGKISPSITKLKFLASLELQDN  110 (380)
Q Consensus        32 ~~~~~~~~l~~~~~~~~~~~~~l~~w~~~~~~~c~~w~gv~c~~-~~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N  110 (380)
                      ..+.|..||++||+++.+|.+.+.+|+.. .++| .|.||+|++ .+|+.|+|++|+++|.+|+.|..+++|+.|+|++|
T Consensus        26 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~-~~~c-~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n  103 (968)
T PLN00113         26 LHAEELELLLSFKSSINDPLKYLSNWNSS-ADVC-LWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN  103 (968)
T ss_pred             CCHHHHHHHHHHHHhCCCCcccCCCCCCC-CCCC-cCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCC
Confidence            36689999999999999888889999753 4666 999999984 58999999999999999999999999999999999


Q ss_pred             cCcccCChhhh-CCcccCeeeccCccccccCCccccCCCCCCEEECcCCcccccCccc
Q 016905          111 DLSGTLPDFLG-SMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQ  167 (380)
Q Consensus       111 ~l~g~~p~~~~-~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~~p~~  167 (380)
                      +++|.+|..+. .+++|++|||++|+++|.+|.  +.+++|+.|||++|.+++.+|..
T Consensus       104 ~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~  159 (968)
T PLN00113        104 QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPND  159 (968)
T ss_pred             ccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChH
Confidence            99999998765 777777777777777666554  23445555555555555544443

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.79  E-value=5.7e-20  Score=170.15  Aligned_cols=111  Identities=21%  Similarity=0.279  Sum_probs=96.6

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ..+|...+.||+|+||+||+|++ .++..||||.+.... .....+....|+.+|++++|||||+++.++..++..+|||
T Consensus         9 ~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVM   88 (429)
T KOG0595|consen    9 VGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVM   88 (429)
T ss_pred             cccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEE
Confidence            34666777899999999999999 668999999996432 3445667889999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |||.+|||.+||+.++..         .++..|+++||+.+|
T Consensus        89 EyC~gGDLs~yi~~~~~l~e~t~r~Fm~QLA~alq~L~~~~I  130 (429)
T KOG0595|consen   89 EYCNGGDLSDYIRRRGRLPEATARHFMQQLASALQFLHENNI  130 (429)
T ss_pred             EeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            999999999999987554         349999999999886

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.76  E-value=2.2e-19  Score=177.46  Aligned_cols=109  Identities=26%  Similarity=0.375  Sum_probs=97.1

Q ss_pred             CcccccccccCCCeeEEEEEe----CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          272 NFSESNIIGQGGFGKVYKGVL----SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~----~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      .....++||.|.||.||+|.+    +....||||.++...++..+.+|+.|..+|++++||||++|.|+....++.+||+
T Consensus       630 ~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvMIiT  709 (996)
T KOG0196|consen  630 CVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVMIIT  709 (996)
T ss_pred             heEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCceeEEEh
Confidence            445678999999999999998    2356899999998777888999999999999999999999999999999999999


Q ss_pred             ecccCCChhhhcccccccce----------eeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKIYT----------KIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~~~----------~~~aL~yLH~~~i  380 (380)
                      |||+||+|+.||+.+.....          |..|..||-+||.
T Consensus       710 EyMENGsLDsFLR~~DGqftviQLVgMLrGIAsGMkYLsdm~Y  752 (996)
T KOG0196|consen  710 EYMENGSLDSFLRQNDGQFTVIQLVGMLRGIASGMKYLSDMNY  752 (996)
T ss_pred             hhhhCCcHHHHHhhcCCceEeehHHHHHHHHHHHhHHHhhcCc
Confidence            99999999999998877654          7778888888763

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=1e-18  Score=161.95  Aligned_cols=111  Identities=17%  Similarity=0.310  Sum_probs=93.5

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCc------hHHHHHHHHHHHhcCcCCCCccceeeeeCCCc
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPG------GEAAFQREVHLISVAIHKNLLQLIGYCTTSSE  342 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~------~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~  342 (380)
                      .+.|-..+.||+|+||.|-+|.- .+|+.||||++.......      ......+|+++|.+++|||||++++++..++.
T Consensus       171 ~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds  250 (475)
T KOG0615|consen  171 NDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDS  250 (475)
T ss_pred             cceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCc
Confidence            34466678999999999999988 679999999997432221      12335799999999999999999999999999


Q ss_pred             eeEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      .|||||||++|+|.+++-..+..         .|++.|+.|||++||
T Consensus       251 ~YmVlE~v~GGeLfd~vv~nk~l~ed~~K~~f~Qll~avkYLH~~GI  297 (475)
T KOG0615|consen  251 SYMVLEYVEGGELFDKVVANKYLREDLGKLLFKQLLTAVKYLHSQGI  297 (475)
T ss_pred             eEEEEEEecCccHHHHHHhccccccchhHHHHHHHHHHHHHHHHcCc
Confidence            99999999999999998765444         449999999999997

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.72  E-value=5.5e-18  Score=161.44  Aligned_cols=106  Identities=30%  Similarity=0.447  Sum_probs=87.7

Q ss_pred             ccccccccCCCeeEEEEEeCCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCC-ceeEEeeccc
Q 016905          274 SESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS-ERILVYPFMQ  351 (380)
Q Consensus       274 ~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~-~~~lV~Ey~~  351 (380)
                      ...+.+|+|+||+||+|.+.....||||++.... +....++|.+|+.+|.+++|||||+++|+|.++. ...+|||||+
T Consensus        44 ~~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~  123 (362)
T KOG0192|consen   44 PIEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYMP  123 (362)
T ss_pred             hhhhhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeCC
Confidence            3345699999999999999444449999997432 2222679999999999999999999999999987 7899999999


Q ss_pred             CCChhhhcccc--ccc---------ceeeeeecceeeec
Q 016905          352 NLSVAYRLRVS--HKI---------YTKIISLSSLHCFS  379 (380)
Q Consensus       352 ~GsL~~~L~~~--~~~---------~~~~~aL~yLH~~~  379 (380)
                      +|+|.++|+..  +..         .+++.|+.|||+++
T Consensus       124 ~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~~  162 (362)
T KOG0192|consen  124 GGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSEG  162 (362)
T ss_pred             CCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999873  222         23899999999987

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.70  E-value=1.9e-17  Score=159.16  Aligned_cols=112  Identities=21%  Similarity=0.334  Sum_probs=98.1

Q ss_pred             HHhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          268 LATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       268 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      .+++.+...++||+|.||.|..+..+.+..||||++++......+++|.+|+++|++++|||||+|+|+|..+++..+|+
T Consensus       535 fPRs~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~  614 (807)
T KOG1094|consen  535 FPRSRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMIT  614 (807)
T ss_pred             cchhheehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHH
Confidence            45556677899999999999999997789999999997777777899999999999999999999999999999999999


Q ss_pred             ecccCCChhhhcccccc-----------cceeeeeecceeeec
Q 016905          348 PFMQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFS  379 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~  379 (380)
                      |||++|+|.+||..+..           ..++..|++||-+.+
T Consensus       615 EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~n  657 (807)
T KOG1094|consen  615 EYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLESLN  657 (807)
T ss_pred             HHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhhc
Confidence            99999999999976522           134888889987654

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.70  E-value=9.5e-18  Score=162.61  Aligned_cols=117  Identities=23%  Similarity=0.360  Sum_probs=97.2

Q ss_pred             HHHHHHhcCcccccccccCCCeeEEEEEeC--CC--cE-EEEEEecc--cCCCchHHHHHHHHHHHhcCcCCCCccceee
Q 016905          264 RELQLATDNFSESNIIGQGGFGKVYKGVLS--DN--TK-VAVKRLQD--YYSPGGEAAFQREVHLISVAIHKNLLQLIGY  336 (380)
Q Consensus       264 ~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~--~g--~~-vavK~l~~--~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~  336 (380)
                      +.++...++....++||+|+||.||+|.+.  ++  .. ||||....  .......++|.+|.++|..++|||||+++|+
T Consensus       150 ~~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGV  229 (474)
T KOG0194|consen  150 QKWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGV  229 (474)
T ss_pred             cccEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence            344555556666789999999999999983  23  23 89999863  2345568899999999999999999999999


Q ss_pred             eeCCCceeEEeecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          337 CTTSSERILVYPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       337 ~~~~~~~~lV~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      +..+.+.++|||+|+||+|.++|+.....          .+.+.|++|||++++
T Consensus       230 a~~~~Pl~ivmEl~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YLh~k~~  283 (474)
T KOG0194|consen  230 AVLEEPLMLVMELCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLEYLHSKNC  283 (474)
T ss_pred             EcCCCccEEEEEecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHHHHHHCCC
Confidence            99999999999999999999999977642          238899999999874

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=1.7e-17  Score=157.31  Aligned_cols=109  Identities=23%  Similarity=0.326  Sum_probs=91.7

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCC--CceeEE
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS--SERILV  346 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~--~~~~lV  346 (380)
                      +.|+..++||+|.||.||||+. .+|+.||+|+++-+ ..........+||.+|++++||||++|.+...+.  +..|||
T Consensus       117 ~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYlV  196 (560)
T KOG0600|consen  117 DSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYLV  196 (560)
T ss_pred             HHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEEE
Confidence            4456678899999999999997 78999999999733 3444566778999999999999999999998876  689999


Q ss_pred             eecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      +|||++ ||..++.....          +.|++.||+|||++||
T Consensus       197 FeYMdh-DL~GLl~~p~vkft~~qIKc~mkQLl~Gl~~cH~~gv  239 (560)
T KOG0600|consen  197 FEYMDH-DLSGLLSSPGVKFTEPQIKCYMKQLLEGLEYCHSRGV  239 (560)
T ss_pred             Eecccc-hhhhhhcCCCcccChHHHHHHHHHHHHHHHHHhhcCe
Confidence            999998 99998875322          3569999999999986

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.69  E-value=9.9e-18  Score=160.42  Aligned_cols=110  Identities=25%  Similarity=0.359  Sum_probs=93.3

Q ss_pred             HhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      ..+.+...+.||+|.||.||.|.++....||||.+...  ....++|.+|+.+|.+++|+|||+++|+|..+++.+||||
T Consensus       204 ~r~~l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~--~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE  281 (468)
T KOG0197|consen  204 PREELKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEG--SMSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTE  281 (468)
T ss_pred             cHHHHHHHHHhcCCccceEEEEEEcCCCcccceEEecc--ccChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEE
Confidence            33344446789999999999999977779999999653  3346889999999999999999999999999989999999


Q ss_pred             cccCCChhhhccccccc-----------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKI-----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~-----------~~~~~aL~yLH~~~i  380 (380)
                      ||++|+|.+||+.....           .++++|.+||.++++
T Consensus       282 ~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~~~  324 (468)
T KOG0197|consen  282 YMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESKNY  324 (468)
T ss_pred             ecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999999973221           349999999998864

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=2.7e-17  Score=165.03  Aligned_cols=97  Identities=28%  Similarity=0.492  Sum_probs=85.7

Q ss_pred             HHHHhcCcccccccccCCCeeEEEEEe------CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeC
Q 016905          266 LQLATDNFSESNIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT  339 (380)
Q Consensus       266 l~~~~~~~~~~~~lg~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~  339 (380)
                      .+..+.+....+.||+|+||+||+|..      .+.+.||||.+++..+.+..++|++|++++++++|||||+|+|+|.+
T Consensus       481 ~~i~r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~  560 (774)
T KOG1026|consen  481 LEIPRSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCRE  560 (774)
T ss_pred             eEechhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEcc
Confidence            344556667788899999999999986      34568999999877666688999999999999999999999999999


Q ss_pred             CCceeEEeecccCCChhhhcccc
Q 016905          340 SSERILVYPFMQNLSVAYRLRVS  362 (380)
Q Consensus       340 ~~~~~lV~Ey~~~GsL~~~L~~~  362 (380)
                      +++.++|+|||..|||.+||+.+
T Consensus       561 ~~P~~MvFEYm~~GDL~eFLra~  583 (774)
T KOG1026|consen  561 GDPLCMVFEYMDHGDLHEFLRAR  583 (774)
T ss_pred             CCeeEEEEEecccccHHHHHHhh
Confidence            99999999999999999999843

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=4.2e-17  Score=158.10  Aligned_cols=110  Identities=19%  Similarity=0.325  Sum_probs=97.8

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc--CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY--YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~--~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ..|...+.||+|+|+.+|+++. .+|..||+|++...  .+...++...+||++.+.++|||||++++++.+.+..|||.
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivL   97 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVL   97 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEE
Confidence            4577889999999999999998 88999999999642  23455778999999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+|++|+|.++++.++..         .|++.||.|||+.+|
T Consensus        98 ELC~~~sL~el~Krrk~ltEpEary~l~QIv~GlkYLH~~~I  139 (592)
T KOG0575|consen   98 ELCHRGSLMELLKRRKPLTEPEARYFLRQIVEGLKYLHSLGI  139 (592)
T ss_pred             EecCCccHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcCc
Confidence            999999999999866554         449999999999986

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.66  E-value=1.7e-16  Score=149.48  Aligned_cols=101  Identities=33%  Similarity=0.423  Sum_probs=84.8

Q ss_pred             CcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHh--cCcCCCCccceeeeeCCC----ceeE
Q 016905          272 NFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLIS--VAIHKNLLQLIGYCTTSS----ERIL  345 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~--~l~H~Niv~l~g~~~~~~----~~~l  345 (380)
                      ..+..+++|+|.||.||||.+ +++.||||++..    +..+.|++|-++.+  .++|+||++++++-...+    +.+|
T Consensus       211 pl~l~eli~~Grfg~V~KaqL-~~~~VAVKifp~----~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywL  285 (534)
T KOG3653|consen  211 PLQLLELIGRGRFGCVWKAQL-DNRLVAVKIFPE----QEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWL  285 (534)
T ss_pred             chhhHHHhhcCccceeehhhc-cCceeEEEecCH----HHHHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeE
Confidence            334467899999999999999 669999999953    35778999988877  568999999999877655    7899


Q ss_pred             EeecccCCChhhhcccccccc--------eeeeeecceee
Q 016905          346 VYPFMQNLSVAYRLRVSHKIY--------TKIISLSSLHC  377 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~~~--------~~~~aL~yLH~  377 (380)
                      |+||-++|||.+||......+        .+..||+|||.
T Consensus       286 Vt~fh~kGsL~dyL~~ntisw~~~cria~SmarGLa~LHe  325 (534)
T KOG3653|consen  286 VTEFHPKGSLCDYLKANTISWNSLCRIAESMARGLAHLHE  325 (534)
T ss_pred             EeeeccCCcHHHHHHhccccHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999998665543        38899999996

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.64  E-value=1.5e-16  Score=146.22  Aligned_cols=105  Identities=20%  Similarity=0.238  Sum_probs=91.5

Q ss_pred             ccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCC-ceeEEeecccCC
Q 016905          276 SNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS-ERILVYPFMQNL  353 (380)
Q Consensus       276 ~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~-~~~lV~Ey~~~G  353 (380)
                      ..+||+|..|+|||+.+ ++++.+|+|.+.........++..+|++++.+.+||+||+++|.|...+ +..++||||++|
T Consensus        84 ~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mEYMDgG  163 (364)
T KOG0581|consen   84 LGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICMEYMDGG  163 (364)
T ss_pred             hhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehhhcCCC
Confidence            57899999999999999 6789999999965555666889999999999999999999999999888 599999999999


Q ss_pred             Chhhhccccccc---------ceeeeeecceee-ecC
Q 016905          354 SVAYRLRVSHKI---------YTKIISLSSLHC-FSL  380 (380)
Q Consensus       354 sL~~~L~~~~~~---------~~~~~aL~yLH~-~~i  380 (380)
                      ||++++...+..         .++++||.|||+ ++|
T Consensus       164 SLd~~~k~~g~i~E~~L~~ia~~VL~GL~YLh~~~~I  200 (364)
T KOG0581|consen  164 SLDDILKRVGRIPEPVLGKIARAVLRGLSYLHEERKI  200 (364)
T ss_pred             CHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhccCe
Confidence            999999854333         349999999995 654

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.64  E-value=1.4e-16  Score=158.43  Aligned_cols=104  Identities=28%  Similarity=0.423  Sum_probs=90.6

Q ss_pred             cccccccCCCeeEEEEEe-CCC----cEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          275 ESNIIGQGGFGKVYKGVL-SDN----TKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       275 ~~~~lg~G~~g~Vy~~~~-~~g----~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      ...+||+|+||+||||.+ +.|    .+||+|++.+....+..++|..|+-.|++++|||+++|+|+|.... ..||++|
T Consensus       700 k~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~qlvtq~  778 (1177)
T KOG1025|consen  700 KDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQLVTQL  778 (1177)
T ss_pred             hhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HHHHHHh
Confidence            367899999999999998 444    4799999987767777899999999999999999999999998765 8899999


Q ss_pred             ccCCChhhhccccccc----------ceeeeeecceeeec
Q 016905          350 MQNLSVAYRLRVSHKI----------YTKIISLSSLHCFS  379 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~  379 (380)
                      ||.|+|.+|++..+..          .|+++|+.|||++.
T Consensus       779 mP~G~LlDyvr~hr~~igsq~lLnw~~QIAkgM~YLe~qr  818 (1177)
T KOG1025|consen  779 MPLGCLLDYVREHRDNIGSQDLLNWCYQIAKGMKYLEEQR  818 (1177)
T ss_pred             cccchHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999865443          34999999999865

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.63  E-value=1.8e-16  Score=139.43  Aligned_cols=108  Identities=23%  Similarity=0.367  Sum_probs=91.8

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      .|...+++|+|.||.||+|+. .+|+.||||++.-. ...+......+|+..|.+++|+||+.+++++...+...||+||
T Consensus         3 rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfEf   82 (318)
T KOG0659|consen    3 RYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFEF   82 (318)
T ss_pred             hhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEEe
Confidence            455678899999999999998 78999999999733 2333456678999999999999999999999999999999999


Q ss_pred             ccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      |+. +|+..++++...          ..++.|++|||++.|
T Consensus        83 m~t-dLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H~~~I  122 (318)
T KOG0659|consen   83 MPT-DLEVVIKDKNIILSPADIKSYMLMTLKGLAYCHSKWI  122 (318)
T ss_pred             ccc-cHHHHhcccccccCHHHHHHHHHHHHHHHHHHHhhhh
Confidence            987 999999876443          238999999998765

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.61  E-value=3.1e-16  Score=144.05  Aligned_cols=111  Identities=23%  Similarity=0.324  Sum_probs=96.3

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      .++|+..++||+|+||.||.++. ++++.+|+|++++..  .....+...+|..+|.+++||.||++.-.+.+.+..|||
T Consensus        24 ~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLylV  103 (357)
T KOG0598|consen   24 PDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYLV  103 (357)
T ss_pred             hhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEEE
Confidence            56788899999999999999988 669999999997432  123466778999999999999999999999999999999


Q ss_pred             eecccCCChhhhcccccccc---------eeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKIY---------TKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~~---------~~~~aL~yLH~~~i  380 (380)
                      +||+.||+|..+|.+.+...         +++.||.|||++||
T Consensus       104 ld~~~GGeLf~hL~~eg~F~E~~arfYlaEi~lAL~~LH~~gI  146 (357)
T KOG0598|consen  104 LDYLNGGELFYHLQREGRFSEDRARFYLAEIVLALGYLHSKGI  146 (357)
T ss_pred             EeccCCccHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHhCCe
Confidence            99999999999998655543         49999999999987

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.61  E-value=5.2e-16  Score=161.04  Aligned_cols=110  Identities=28%  Similarity=0.430  Sum_probs=95.8

Q ss_pred             hcCcccccccccCCCeeEEEEEeC--CCc----EEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCce
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLS--DNT----KVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSER  343 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~--~g~----~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~  343 (380)
                      .++.+..+.||+|.||.||+|.+.  +|.    .||||.+....+.+...+|.+|..+|++++|||||+++|+|......
T Consensus       691 ~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~  770 (1025)
T KOG1095|consen  691 RKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPP  770 (1025)
T ss_pred             hhheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCc
Confidence            445666789999999999999983  343    59999998777788899999999999999999999999999999999


Q ss_pred             eEEeecccCCChhhhccccccc----------------ceeeeeecceeeec
Q 016905          344 ILVYPFMQNLSVAYRLRVSHKI----------------YTKIISLSSLHCFS  379 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~~----------------~~~~~aL~yLH~~~  379 (380)
                      +|++|||++|||..||++.+..                .+++.|..||++++
T Consensus       771 ~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~~  822 (1025)
T KOG1095|consen  771 LILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESKH  822 (1025)
T ss_pred             EEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhCC
Confidence            9999999999999999976332                23899999999875

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=2e-16  Score=137.33  Aligned_cols=112  Identities=24%  Similarity=0.268  Sum_probs=95.3

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeE
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~l  345 (380)
                      +.++|+.++.||+|.||.||.|.. .++..||+|++...+  ..+..+++.+|+++-+.++||||++++||+.+....||
T Consensus        20 ~l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyL   99 (281)
T KOG0580|consen   20 TLDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYL   99 (281)
T ss_pred             chhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEE
Confidence            356788899999999999999998 557899999996432  23346789999999999999999999999999999999


Q ss_pred             EeecccCCChhhhccccccc-----------ceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHKI-----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~~-----------~~~~~aL~yLH~~~i  380 (380)
                      ++||.++|+++..|++.+..           .+++.||.|||..++
T Consensus       100 ilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~V  145 (281)
T KOG0580|consen  100 ILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLKRV  145 (281)
T ss_pred             EEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccCCc
Confidence            99999999999999833221           349999999998864

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.60  E-value=8e-16  Score=141.67  Aligned_cols=111  Identities=22%  Similarity=0.285  Sum_probs=92.7

Q ss_pred             hcCcccccccccCCCeeEEEEEeC----CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLS----DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~----~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~l  345 (380)
                      .++|+..++||+|+||.||+|.+.    .+..||+|.++...+....+.|.+|+..+.+++||||++++|++..++..++
T Consensus         4 ~~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l   83 (266)
T cd05064           4 NKSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMI   83 (266)
T ss_pred             hHHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEE
Confidence            345777899999999999999862    3568999999754444445789999999999999999999999999999999


Q ss_pred             EeecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      ||||+++|+|.++++.....          .+++.||+|||+.++
T Consensus        84 v~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al~~lH~~~i  128 (266)
T cd05064          84 VTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSEMGY  128 (266)
T ss_pred             EEEeCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            99999999999999754221          238899999999874

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.59  E-value=5.6e-16  Score=150.14  Aligned_cols=94  Identities=24%  Similarity=0.356  Sum_probs=80.2

Q ss_pred             HhcCcccccccccCCCeeEEEEEe------CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCC
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSS  341 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~  341 (380)
                      ..++|+..+.||+|+||.||+|+.      +++..||||+++........+.+.+|++++..+ +||||++++|+|...+
T Consensus        33 ~~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~  112 (375)
T cd05104          33 PRNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGG  112 (375)
T ss_pred             chHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCC
Confidence            455678889999999999999974      346689999996443344567789999999999 8999999999999999


Q ss_pred             ceeEEeecccCCChhhhcccc
Q 016905          342 ERILVYPFMQNLSVAYRLRVS  362 (380)
Q Consensus       342 ~~~lV~Ey~~~GsL~~~L~~~  362 (380)
                      ..++||||+++|+|.++++..
T Consensus       113 ~~~lv~E~~~~g~L~~~l~~~  133 (375)
T cd05104         113 PTLVITEYCCYGDLLNFLRRK  133 (375)
T ss_pred             cceeeehhccCCcHHHHHHhc
Confidence            999999999999999999753

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.59  E-value=4.3e-16  Score=149.55  Aligned_cols=109  Identities=22%  Similarity=0.326  Sum_probs=93.8

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      ++|...+.||+|+||.||||+- .+.+.||+|.+.+.. .+.+.+...+|++++++++|||||.++.+|....+.++|+|
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte   81 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTE   81 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEeh
Confidence            3566678899999999999997 458899999996432 33356779999999999999999999999999999999999


Q ss_pred             cccCCChhhhcccccccce---------eeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKIYT---------KIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~~~---------~~~aL~yLH~~~i  380 (380)
                      |+.+ +|.++|.......+         ++.||.|||+.+|
T Consensus        82 ~a~g-~L~~il~~d~~lpEe~v~~~a~~LVsaL~yLhs~ri  121 (808)
T KOG0597|consen   82 YAVG-DLFTILEQDGKLPEEQVRAIAYDLVSALYYLHSNRI  121 (808)
T ss_pred             hhhh-hHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhcCc
Confidence            9976 99999987666543         8899999999876

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.59  E-value=5.5e-16  Score=147.87  Aligned_cols=94  Identities=26%  Similarity=0.424  Sum_probs=78.0

Q ss_pred             HhcCcccccccccCCCeeEEEEEe------CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCC
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSS  341 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~  341 (380)
                      +.++|+..++||+|+||.||+|..      .++..||||++.........+.+.+|++++.++ +||||++++|+|...+
T Consensus         5 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~   84 (338)
T cd05102           5 PRDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPN   84 (338)
T ss_pred             chhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCC
Confidence            456788889999999999999974      235689999996543344467799999999999 8999999999987644


Q ss_pred             -ceeEEeecccCCChhhhcccc
Q 016905          342 -ERILVYPFMQNLSVAYRLRVS  362 (380)
Q Consensus       342 -~~~lV~Ey~~~GsL~~~L~~~  362 (380)
                       ..++||||+++|+|.++++..
T Consensus        85 ~~~~lv~ey~~~g~L~~~l~~~  106 (338)
T cd05102          85 GPLMVIVEFCKYGNLSNFLRAK  106 (338)
T ss_pred             CceEEEEecCCCCcHHHHHHhc
Confidence             578999999999999998753

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.58  E-value=1.3e-15  Score=143.03  Aligned_cols=110  Identities=21%  Similarity=0.319  Sum_probs=90.9

Q ss_pred             cCcccccccccCCCeeEEEEEeCC-----------------CcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccc
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLSD-----------------NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQL  333 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~~-----------------g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l  333 (380)
                      ++|...+.||+|+||.||++..++                 +..||+|.+.........++|.+|++++.+++||||+++
T Consensus         5 ~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~   84 (304)
T cd05096           5 GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRL   84 (304)
T ss_pred             hhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEE
Confidence            456778899999999999998532                 347999998654334446789999999999999999999


Q ss_pred             eeeeeCCCceeEEeecccCCChhhhccccc----------------------------ccceeeeeecceeeecC
Q 016905          334 IGYCTTSSERILVYPFMQNLSVAYRLRVSH----------------------------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       334 ~g~~~~~~~~~lV~Ey~~~GsL~~~L~~~~----------------------------~~~~~~~aL~yLH~~~i  380 (380)
                      ++++...+..++||||+++|+|.+++....                            ...+++.||+|||+.+|
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i  159 (304)
T cd05096          85 LGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLNF  159 (304)
T ss_pred             EEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCCc
Confidence            999999999999999999999999986431                            12348899999999875

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.58  E-value=1.6e-15  Score=146.16  Aligned_cols=110  Identities=18%  Similarity=0.241  Sum_probs=93.6

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|+..+.||+|+||.||++.. .+++.||||++....  .......+.+|++++..++||||+++++++..++..++||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIM   80 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEE
Confidence            4688889999999999999998 568999999996321  2234566889999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.++++.....         .+++.||+|||+.+|
T Consensus        81 E~~~~g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~~i  122 (364)
T cd05599          81 EYLPGGDMMTLLMKKDTFTEEETRFYIAETILAIDSIHKLGY  122 (364)
T ss_pred             CCCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            999999999999765432         348999999999875

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.58  E-value=3.6e-16  Score=151.35  Aligned_cols=115  Identities=23%  Similarity=0.351  Sum_probs=98.3

Q ss_pred             HHHHHHHhcCcccccccccCCCeeEEEEEeC-CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCC
Q 016905          263 CRELQLATDNFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS  341 (380)
Q Consensus       263 ~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~  341 (380)
                      +++++..+.+.....+||-|.||.||.|+|+ -...||||.++++  ....++|+.|..+|..++|||+|+|+|+|..+.
T Consensus       259 ~DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKED--tMeveEFLkEAAvMKeikHpNLVqLLGVCT~Ep  336 (1157)
T KOG4278|consen  259 ADKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED--TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEP  336 (1157)
T ss_pred             cchhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhc--chhHHHHHHHHHHHHhhcCccHHHHhhhhccCC
Confidence            3667777777788899999999999999994 4779999999653  446899999999999999999999999999999


Q ss_pred             ceeEEeecccCCChhhhccccccc-----------ceeeeeecceeeec
Q 016905          342 ERILVYPFMQNLSVAYRLRVSHKI-----------YTKIISLSSLHCFS  379 (380)
Q Consensus       342 ~~~lV~Ey~~~GsL~~~L~~~~~~-----------~~~~~aL~yLH~~~  379 (380)
                      .+|||+|||.+|+|.+||++....           .+|..|++||.+++
T Consensus       337 PFYIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkkn  385 (1157)
T KOG4278|consen  337 PFYIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKKN  385 (1157)
T ss_pred             CeEEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999975432           33777888886654

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.58  E-value=1.9e-15  Score=146.77  Aligned_cols=109  Identities=16%  Similarity=0.185  Sum_probs=92.8

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .|+..+.||+|+||+||+|+. .+++.+|+|++....  .....+.+.+|++++.+++||||+++++++.+++..++|||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E   81 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEe
Confidence            577788999999999999988 668899999996321  22345678999999999999999999999999999999999


Q ss_pred             cccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.+++......         .+++.||+|||+.+|
T Consensus        82 ~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~~LH~~gi  122 (381)
T cd05626          82 YIPGGDMMSLLIRMEVFPEVLARFYIAELTLAIESVHKMGF  122 (381)
T ss_pred             cCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            99999999998754432         348899999999886

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.58  E-value=1.3e-15  Score=148.70  Aligned_cols=95  Identities=26%  Similarity=0.389  Sum_probs=80.8

Q ss_pred             HHhcCcccccccccCCCeeEEEEEeC------CCcEEEEEEecccCCCchHHHHHHHHHHHhcCc-CCCCccceeeeeCC
Q 016905          268 LATDNFSESNIIGQGGFGKVYKGVLS------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI-HKNLLQLIGYCTTS  340 (380)
Q Consensus       268 ~~~~~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~-H~Niv~l~g~~~~~  340 (380)
                      ...+.|...+.||+|+||.||+|+..      .+..||||++.........+.|.+|++++.++. |||||+++|+|...
T Consensus        34 ~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~  113 (400)
T cd05105          34 FPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKS  113 (400)
T ss_pred             ccccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccC
Confidence            35677888899999999999999862      234799999965444445678999999999996 99999999999999


Q ss_pred             CceeEEeecccCCChhhhcccc
Q 016905          341 SERILVYPFMQNLSVAYRLRVS  362 (380)
Q Consensus       341 ~~~~lV~Ey~~~GsL~~~L~~~  362 (380)
                      +..++|||||++|+|.++|+..
T Consensus       114 ~~~~lv~Ey~~~g~L~~~l~~~  135 (400)
T cd05105         114 GPIYIITEYCFYGDLVNYLHKN  135 (400)
T ss_pred             CceEEEEEecCCCcHHHHHHHh
Confidence            9999999999999999998753

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.58  E-value=1.9e-15  Score=146.43  Aligned_cols=110  Identities=15%  Similarity=0.195  Sum_probs=93.2

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|+..+.||+|+||.||++.. .+++.||||++....  .....+.+.+|++++.+++|||||++++++...+..++||
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~   80 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIM   80 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEE
Confidence            3677889999999999999987 578999999985321  2234567889999999999999999999999999999999


Q ss_pred             ecccCCChhhhcccccc---------cceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHK---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~---------~~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.+++...+.         ..+++.||+|||+.+|
T Consensus        81 E~~~gg~L~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~gi  122 (377)
T cd05629          81 EFLPGGDLMTMLIKYDTFSEDVTRFYMAECVLAIEAVHKLGF  122 (377)
T ss_pred             eCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            99999999999875433         2458999999999875

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.58  E-value=5.3e-16  Score=150.18  Aligned_cols=116  Identities=26%  Similarity=0.401  Sum_probs=99.0

Q ss_pred             CHHHHHHHhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecc-cCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCC
Q 016905          262 SCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQD-YYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS  340 (380)
Q Consensus       262 ~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~-~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~  340 (380)
                      +.+++++..+.+...+.||+|.||+||+|.+- | .||||.+.. ..+.+..++|.+|+..+++-||.||+=+.|||..+
T Consensus       383 s~~~WeIp~~ev~l~~rIGsGsFGtV~Rg~wh-G-dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p  460 (678)
T KOG0193|consen  383 SLEEWEIPPEEVLLGERIGSGSFGTVYRGRWH-G-DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNP  460 (678)
T ss_pred             cccccccCHHHhhccceeccccccceeecccc-c-ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCC
Confidence            34666777777778899999999999999983 3 599999973 33445688999999999999999999999999998


Q ss_pred             CceeEEeecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          341 SERILVYPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       341 ~~~~lV~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      +. +||+.+|++-+|+.+||..+..          +++++|+.|||.++|
T Consensus       461 ~~-AIiTqwCeGsSLY~hlHv~etkfdm~~~idIAqQiaqGM~YLHAK~I  509 (678)
T KOG0193|consen  461 PL-AIITQWCEGSSLYTHLHVQETKFDMNTTIDIAQQIAQGMDYLHAKNI  509 (678)
T ss_pred             ce-eeeehhccCchhhhhccchhhhhhHHHHHHHHHHHHHhhhhhhhhhh
Confidence            77 9999999999999999965443          559999999999987

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.57  E-value=1.3e-15  Score=142.26  Aligned_cols=110  Identities=16%  Similarity=0.153  Sum_probs=92.8

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|+..+.||+|+||.||++.. .+++.||+|++....  .....+.+.+|++++.+++||||+++++++.+++..++||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   80 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLM   80 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEE
Confidence            3677789999999999999998 468999999985321  1224567889999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.++++..+..         .+++.||+|||++||
T Consensus        81 e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  122 (291)
T cd05612          81 EYVPGGELFSYLRNSGRFSNSTGLFYASEIVCALEYLHSKEI  122 (291)
T ss_pred             eCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            999999999999765433         348899999999875

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.57  E-value=1.5e-15  Score=142.26  Aligned_cols=110  Identities=23%  Similarity=0.259  Sum_probs=95.8

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .++|+..++||.|..++||+|.. +.++.||||++.-.......++..+|+..|+-++||||++++..+..+.+.|+||.
T Consensus        25 ~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvVmp  104 (516)
T KOG0582|consen   25 AKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVVMP  104 (516)
T ss_pred             ccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEeeh
Confidence            45688889999999999999998 78899999999743344457889999999999999999999999999999999999


Q ss_pred             cccCCChhhhcccccc-----------cceeeeeecceeeec
Q 016905          349 FMQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFS  379 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~  379 (380)
                      ||.+||+.+.++..-.           .++++.||.|||++|
T Consensus       105 fMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~G  146 (516)
T KOG0582|consen  105 FMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQNG  146 (516)
T ss_pred             hhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999974311           255999999999986

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.57  E-value=1.2e-15  Score=140.14  Aligned_cols=106  Identities=29%  Similarity=0.438  Sum_probs=87.1

Q ss_pred             cccccccCCCeeEEEEEeC-----CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          275 ESNIIGQGGFGKVYKGVLS-----DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       275 ~~~~lg~G~~g~Vy~~~~~-----~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      ..+.||+|.||.||+|.+.     .+..|+||.+.........+.|.+|++.+.+++||||++++|+|...+..++||||
T Consensus         3 ~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~   82 (259)
T PF07714_consen    3 LIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEY   82 (259)
T ss_dssp             EEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE-
T ss_pred             EeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccccccccccccccccccccccccccc
Confidence            3577999999999999985     25689999996544444578999999999999999999999999988889999999


Q ss_pred             ccCCChhhhcccc--ccc---------ceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVS--HKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~--~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +++|+|.++|+..  ...         .+++.||+|||+.+|
T Consensus        83 ~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~~i  124 (259)
T PF07714_consen   83 CPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSNNI  124 (259)
T ss_dssp             -TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999876  222         239999999998764

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.56  E-value=2.9e-15  Score=142.49  Aligned_cols=110  Identities=15%  Similarity=0.224  Sum_probs=93.5

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|+..+.||+|+||.||+|.. .+++.||+|.+....  .....+.+.+|+.++.+++||||+++++++..++..++||
T Consensus        18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   97 (329)
T PTZ00263         18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLL   97 (329)
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEE
Confidence            5677889999999999999998 468999999986321  2234567899999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.++++.....         .+++.||+|||+.+|
T Consensus        98 e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i  139 (329)
T PTZ00263         98 EFVVGGELFTHLRKAGRFPNDVAKFYHAELVLAFEYLHSKDI  139 (329)
T ss_pred             cCCCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            999999999999765432         348889999999875

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.56  E-value=3.5e-15  Score=143.92  Aligned_cols=110  Identities=15%  Similarity=0.219  Sum_probs=93.1

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|+..+.||+|+||+||++.. .+++.+|+|++....  .......+.+|+.++.+++|+||+++++++.+.+..++||
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~   80 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIM   80 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEE
Confidence            4678889999999999999987 568999999996321  1223467889999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.+++......         .+++.||+|||++||
T Consensus        81 E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi  122 (363)
T cd05628          81 EFLPGGDMMTLLMKKDTLTEEETQFYIAETVLAIDSIHQLGF  122 (363)
T ss_pred             cCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            999999999999765433         348899999999886

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.56  E-value=2.6e-15  Score=146.54  Aligned_cols=97  Identities=24%  Similarity=0.388  Sum_probs=81.1

Q ss_pred             HHHHhcCcccccccccCCCeeEEEEEeC------CCcEEEEEEecccCCCchHHHHHHHHHHHhcCc-CCCCccceeeee
Q 016905          266 LQLATDNFSESNIIGQGGFGKVYKGVLS------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI-HKNLLQLIGYCT  338 (380)
Q Consensus       266 l~~~~~~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~-H~Niv~l~g~~~  338 (380)
                      +..+.++|...+.||+|+||.||+|++.      .+..||||++.........+.+.+|++++.++. |||||+++|+|.
T Consensus        32 ~~~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~  111 (401)
T cd05107          32 WEMPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACT  111 (401)
T ss_pred             ceecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEc
Confidence            3445556777899999999999999862      346899999975433334567999999999997 999999999999


Q ss_pred             CCCceeEEeecccCCChhhhcccc
Q 016905          339 TSSERILVYPFMQNLSVAYRLRVS  362 (380)
Q Consensus       339 ~~~~~~lV~Ey~~~GsL~~~L~~~  362 (380)
                      ..+..++||||+++|+|.++|+..
T Consensus       112 ~~~~~~iv~E~~~~g~L~~~l~~~  135 (401)
T cd05107         112 KGGPIYIITEYCRYGDLVDYLHRN  135 (401)
T ss_pred             cCCCcEEEEeccCCCcHHHHHHhc
Confidence            999999999999999999999754

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.56  E-value=3.8e-15  Score=144.68  Aligned_cols=109  Identities=16%  Similarity=0.147  Sum_probs=92.6

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .|+..++||+|+||.||+|+. .+++.+|+|++....  .....+.+.+|++++.+++|||||++++++..++..++|||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E   81 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD   81 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEe
Confidence            477789999999999999998 568899999986321  12345678899999999999999999999999999999999


Q ss_pred             cccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||++|+|.++++.....         .+++.||+|||+++|
T Consensus        82 ~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~al~~lH~~~i  122 (382)
T cd05625          82 YIPGGDMMSLLIRMGIFPEDLARFYIAELTCAVESVHKMGF  122 (382)
T ss_pred             CCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            99999999999764432         348899999999886

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.56  E-value=4.6e-15  Score=141.32  Aligned_cols=109  Identities=17%  Similarity=0.221  Sum_probs=92.9

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      +|+..+.||+|+||.||+|+. .+++.||+|++....  .....+.+.+|++++..++||||+++++++..++..++|||
T Consensus         2 ~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   81 (333)
T cd05600           2 DFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAME   81 (333)
T ss_pred             CcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEEe
Confidence            577889999999999999998 458999999996321  12345678899999999999999999999999999999999


Q ss_pred             cccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.++++.....         .+++.||+|||+.+|
T Consensus        82 ~~~g~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i  122 (333)
T cd05600          82 YVPGGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALHELGY  122 (333)
T ss_pred             CCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            99999999999754332         358899999999875

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.56  E-value=4.5e-15  Score=143.78  Aligned_cols=109  Identities=17%  Similarity=0.157  Sum_probs=92.8

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      +|+..+.||+|+||.||++.. .+++.||||++....  .....+.+.+|++++.+++||||+++++.+..++..++|||
T Consensus         2 ~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E   81 (376)
T cd05598           2 MFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (376)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEEe
Confidence            577889999999999999998 568999999985321  12235678899999999999999999999999999999999


Q ss_pred             cccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.+++......         .+++.||+|||+++|
T Consensus        82 ~~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~~i  122 (376)
T cd05598          82 YIPGGDMMSLLIRLGIFEEDLARFYIAELTCAIESVHKMGF  122 (376)
T ss_pred             CCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            99999999999765432         358899999999886

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.55  E-value=5.2e-15  Score=141.49  Aligned_cols=111  Identities=19%  Similarity=0.256  Sum_probs=92.4

Q ss_pred             hcCcccccccccCCCeeEEEEEeCC--CcEEEEEEeccc--CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLSD--NTKVAVKRLQDY--YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~~--g~~vavK~l~~~--~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~l  345 (380)
                      .++|+..+.||+|+||.||+|....  +..||+|++...  ......+.+.+|++++..++||||+++++++..++..++
T Consensus        29 ~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~l  108 (340)
T PTZ00426         29 YEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYL  108 (340)
T ss_pred             hhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEE
Confidence            3467788999999999999998732  368999998532  122345678899999999999999999999999999999


Q ss_pred             EeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||||+++|+|.++++.....         .+++.||+|||+++|
T Consensus       109 v~Ey~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i  152 (340)
T PTZ00426        109 VLEFVIGGEFFTFLRRNKRFPNDVGCFYAAQIVLIFEYLQSLNI  152 (340)
T ss_pred             EEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            99999999999999765432         358999999999875

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.54  E-value=5.5e-15  Score=141.95  Aligned_cols=112  Identities=17%  Similarity=0.255  Sum_probs=94.2

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC---C-chHHHHHHHHHHHhcCc-CCCCccceeeeeCCCc
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS---P-GGEAAFQREVHLISVAI-HKNLLQLIGYCTTSSE  342 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~-~~~~~f~~e~~~l~~l~-H~Niv~l~g~~~~~~~  342 (380)
                      ....|...+.||+|+||.||.|.. .++..||+|.+.....   . ...+...+|+.++++++ ||||++++.++.....
T Consensus        15 ~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~~   94 (370)
T KOG0583|consen   15 SIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPTK   94 (370)
T ss_pred             ccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCCe
Confidence            455788899999999999999987 5789999997754211   1 23455668999999998 9999999999999999


Q ss_pred             eeEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      .++||||+.+|+|.+++..++..         +|++.|++|||+.||
T Consensus        95 ~~ivmEy~~gGdL~~~i~~~g~l~E~~ar~~F~Qlisav~y~H~~gi  141 (370)
T KOG0583|consen   95 IYIVMEYCSGGDLFDYIVNKGRLKEDEARKYFRQLISAVAYCHSRGI  141 (370)
T ss_pred             EEEEEEecCCccHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhCCE
Confidence            99999999999999999874443         459999999999986

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.54  E-value=1.3e-15  Score=141.15  Aligned_cols=109  Identities=14%  Similarity=0.237  Sum_probs=93.2

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .|+..+.||+|.||.|-+|.. ..|+.||||.++.+.  ++++.-.+.+|+++|+.++||||++++.++...+...||||
T Consensus        54 RyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivME  133 (668)
T KOG0611|consen   54 RYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVME  133 (668)
T ss_pred             HHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEEE
Confidence            455668899999999999987 679999999997432  23334457899999999999999999999999999999999


Q ss_pred             cccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |..+|.|++|+.+++..         +++..|+.|||+.++
T Consensus       134 YaS~GeLYDYiSer~~LsErEaRhfFRQIvSAVhYCHknrV  174 (668)
T KOG0611|consen  134 YASGGELYDYISERGSLSEREARHFFRQIVSAVHYCHKNRV  174 (668)
T ss_pred             ecCCccHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhccc
Confidence            99999999999876554         559999999998764

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.54  E-value=4.6e-15  Score=137.70  Aligned_cols=109  Identities=24%  Similarity=0.383  Sum_probs=90.2

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCC--ceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS--ERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~--~~~lV~  347 (380)
                      .++...+.||+|+||.||.+.. ++|...|||.+...... ..+.+.+|+.+|.+++|||||+.+|......  ...+.|
T Consensus        17 ~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~-~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~m   95 (313)
T KOG0198|consen   17 SNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSP-TSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFM   95 (313)
T ss_pred             chhhhhccccCccceEEEEEEecCCCcceeeeeeecccch-hHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeee
Confidence            3455678899999999999998 45999999998643222 2677899999999999999999999865554  588999


Q ss_pred             ecccCCChhhhccccc-cc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSH-KI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~-~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|||.+++...+ ..         +++++||+|||++||
T Consensus        96 Ey~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~ylHs~g~  138 (313)
T KOG0198|consen   96 EYAPGGSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYLHSKGI  138 (313)
T ss_pred             eccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            9999999999998765 22         449999999999875

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.54  E-value=5.8e-15  Score=135.86  Aligned_cols=114  Identities=20%  Similarity=0.261  Sum_probs=95.8

Q ss_pred             HHHHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCcee
Q 016905          266 LQLATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       266 l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~  344 (380)
                      ++.+++++.....||+|+||.||+|.. +++..||+|.+... .....+.+.+|+.++.+++|+||+++++++..++..+
T Consensus         3 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~   81 (268)
T cd06624           3 YEYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPER-DSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFK   81 (268)
T ss_pred             cccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCC-CHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEE
Confidence            455677777788999999999999997 56789999988543 2334678999999999999999999999999999999


Q ss_pred             EEeecccCCChhhhcccccc------------cceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHK------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~------------~~~~~~aL~yLH~~~i  380 (380)
                      +|+||+++++|.++++....            ..+++.|++|||+.+|
T Consensus        82 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i  129 (268)
T cd06624          82 IFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQI  129 (268)
T ss_pred             EEEecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHCCE
Confidence            99999999999999975321            1358899999999875

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.54  E-value=1e-14  Score=132.82  Aligned_cols=104  Identities=30%  Similarity=0.435  Sum_probs=88.5

Q ss_pred             cccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCCCh
Q 016905          277 NIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSV  355 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~GsL  355 (380)
                      +.||+|+||.||+|.. .+++.+|+|.+...........|.+|++++.+++||||++++++|...+..++||||+++|+|
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDF   80 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcH
Confidence            3689999999999998 578999999886443344567799999999999999999999999999999999999999999


Q ss_pred             hhhccccccc----------ceeeeeecceeeecC
Q 016905          356 AYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       356 ~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      .++++.....          .+++.||+|||+.+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i  115 (252)
T cd05084          81 LTFLRTEGPRLKVKELIQMVENAAAGMEYLESKHC  115 (252)
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9999754321          338899999999875

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.53  E-value=5.3e-15  Score=138.59  Aligned_cols=102  Identities=25%  Similarity=0.356  Sum_probs=82.8

Q ss_pred             cCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhc--CcCCCCccceeeeeCC----Ccee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISV--AIHKNLLQLIGYCTTS----SERI  344 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~--l~H~Niv~l~g~~~~~----~~~~  344 (380)
                      ......+.||+|.||+||+|.+ .|+.||||++..    .+++++.+|.++...  +||+||+.++|.-..+    .+.|
T Consensus       211 rqI~L~e~IGkGRyGEVwrG~w-rGe~VAVKiF~s----rdE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLw  285 (513)
T KOG2052|consen  211 RQIVLQEIIGKGRFGEVWRGRW-RGEDVAVKIFSS----RDERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLW  285 (513)
T ss_pred             heeEEEEEecCccccceeeccc-cCCceEEEEecc----cchhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEE
Confidence            3456678999999999999999 789999999942    246778888888875  5999999999876543    3589


Q ss_pred             EEeecccCCChhhhccccccc--------ceeeeeecceee
Q 016905          345 LVYPFMQNLSVAYRLRVSHKI--------YTKIISLSSLHC  377 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~~--------~~~~~aL~yLH~  377 (380)
                      ||+||-++|||+|||....-.        ..++.||++||-
T Consensus       286 LvTdYHe~GSL~DyL~r~tv~~~~ml~LalS~AsGLaHLH~  326 (513)
T KOG2052|consen  286 LVTDYHEHGSLYDYLNRNTVTTEGMLKLALSIASGLAHLHM  326 (513)
T ss_pred             EeeecccCCcHHHHHhhccCCHHHHHHHHHHHhhhHHHHHH
Confidence            999999999999999864322        228889999993

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.53  E-value=5.5e-15  Score=141.99  Aligned_cols=108  Identities=19%  Similarity=0.193  Sum_probs=89.9

Q ss_pred             cccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeeccc
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQ  351 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~  351 (380)
                      |+..+.||+|+||.||+++. .+++.||||++.........+.|.+|++++.+++|+||+++++++...+..++||||++
T Consensus        76 ~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  155 (353)
T PLN00034         76 LERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEFMD  155 (353)
T ss_pred             HhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEecCC
Confidence            44467899999999999998 56899999999643333446779999999999999999999999999999999999999


Q ss_pred             CCChhhhcccc-----cccceeeeeecceeeecC
Q 016905          352 NLSVAYRLRVS-----HKIYTKIISLSSLHCFSL  380 (380)
Q Consensus       352 ~GsL~~~L~~~-----~~~~~~~~aL~yLH~~~i  380 (380)
                      +|+|.+.....     ....+++.||+|||+.+|
T Consensus       156 ~~~L~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i  189 (353)
T PLN00034        156 GGSLEGTHIADEQFLADVARQILSGIAYLHRRHI  189 (353)
T ss_pred             CCcccccccCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            99998754321     223569999999999875

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.53  E-value=3.5e-15  Score=133.26  Aligned_cols=110  Identities=20%  Similarity=0.272  Sum_probs=93.7

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|+...+||.|+||+|...+. .+|..+|+|++....  .....+...+|..+|..+.||.++++.+.+.+.+..+|||
T Consensus        44 ~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymvm  123 (355)
T KOG0616|consen   44 QDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMVM  123 (355)
T ss_pred             hhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEEE
Confidence            4566678999999999999998 568899999996322  1223455678999999999999999999999999999999


Q ss_pred             ecccCCChhhhcccccccc---------eeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKIY---------TKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~~---------~~~~aL~yLH~~~i  380 (380)
                      ||+++|.|..+|++.+...         +++.||+|||+++|
T Consensus       124 eyv~GGElFS~Lrk~~rF~e~~arFYAAeivlAleylH~~~i  165 (355)
T KOG0616|consen  124 EYVPGGELFSYLRKSGRFSEPHARFYAAEIVLALEYLHSLDI  165 (355)
T ss_pred             eccCCccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHhcCe
Confidence            9999999999999865553         39999999999876

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.53  E-value=9.9e-15  Score=133.37  Aligned_cols=108  Identities=26%  Similarity=0.337  Sum_probs=91.6

Q ss_pred             cCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      ++|+..+.||+|+||.||++.+.++..+|+|.+...  ....+.|.+|++++.+++||||+++++++..++..++||||+
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~   81 (256)
T cd05114           4 SELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEG--AMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFM   81 (256)
T ss_pred             HHcEEeeEecCCcCceEEEEEeccCceEEEEecccC--CccHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcC
Confidence            346777889999999999999977889999988532  223568999999999999999999999999999999999999


Q ss_pred             cCCChhhhcccccc-c---------ceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSHK-I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~~-~---------~~~~~aL~yLH~~~i  380 (380)
                      ++|+|.++++.... .         .+++.||+|||+.+|
T Consensus        82 ~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  121 (256)
T cd05114          82 ENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERNSF  121 (256)
T ss_pred             CCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            99999999975322 1         238899999999875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.53  E-value=1.2e-14  Score=133.61  Aligned_cols=110  Identities=25%  Similarity=0.324  Sum_probs=92.9

Q ss_pred             cCcccccccccCCCeeEEEEEeC----CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLS----DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~----~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      ++|+..+.||+|+||.||+|...    +...||||.+..........+|.+|+.++.+++||||+++++++...+..++|
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv   83 (266)
T cd05033           4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMII   83 (266)
T ss_pred             HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEEE
Confidence            56788899999999999999983    24589999986544444567899999999999999999999999999999999


Q ss_pred             eecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.++++.....          .+++.|++|||+++|
T Consensus        84 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i  127 (266)
T cd05033          84 TEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMNY  127 (266)
T ss_pred             EEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9999999999998754321          348889999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.53  E-value=2.6e-15  Score=134.50  Aligned_cols=108  Identities=19%  Similarity=0.277  Sum_probs=87.5

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCC-chHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSP-GGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      .|+...++|+|+||.|||++. ++|+.||||++.+..+. .-.+-.++|+++|.+++|+|+|.|+.+|......+||+||
T Consensus         3 kYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE~   82 (396)
T KOG0593|consen    3 KYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFEY   82 (396)
T ss_pred             HHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEeee
Confidence            355567899999999999999 66999999999764442 3355678999999999999999999999999999999999


Q ss_pred             ccCCChhhhcccc----------cccceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVS----------HKIYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~----------~~~~~~~~aL~yLH~~~i  380 (380)
                      ++.-=|. -|...          +..++++.|+.|||+.+|
T Consensus        83 ~dhTvL~-eLe~~p~G~~~~~vk~~l~Q~l~ai~~cHk~n~  122 (396)
T KOG0593|consen   83 CDHTVLH-ELERYPNGVPSELVKKYLYQLLKAIHFCHKNNC  122 (396)
T ss_pred             cchHHHH-HHHhccCCCCHHHHHHHHHHHHHHhhhhhhcCe
Confidence            9874333 33322          223569999999999875

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.53  E-value=3.1e-15  Score=144.92  Aligned_cols=95  Identities=26%  Similarity=0.417  Sum_probs=80.1

Q ss_pred             HHHhcCcccccccccCCCeeEEEEEe------CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeC
Q 016905          267 QLATDNFSESNIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTT  339 (380)
Q Consensus       267 ~~~~~~~~~~~~lg~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~  339 (380)
                      ....++|+..+.||+|+||.||+++.      .++..||||++...........+.+|++++..+ +|+|||+++|+|..
T Consensus        34 ~~~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~  113 (374)
T cd05106          34 EFPRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTH  113 (374)
T ss_pred             cccHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecC
Confidence            34456788899999999999999884      234589999996443333456789999999999 89999999999999


Q ss_pred             CCceeEEeecccCCChhhhccc
Q 016905          340 SSERILVYPFMQNLSVAYRLRV  361 (380)
Q Consensus       340 ~~~~~lV~Ey~~~GsL~~~L~~  361 (380)
                      .+..++||||+++|+|.++++.
T Consensus       114 ~~~~~lv~ey~~~g~L~~~l~~  135 (374)
T cd05106         114 GGPVLVITEYCCYGDLLNFLRK  135 (374)
T ss_pred             CCCeEEeHhhccCCcHHHHHHh
Confidence            9999999999999999999864

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.53  E-value=1.2e-14  Score=138.42  Aligned_cols=109  Identities=18%  Similarity=0.184  Sum_probs=93.0

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .++|+..+.||+|+||.||+++. .++..+|+|.+.........+.|.+|++++.+++||||+++++++..++..++|||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   83 (331)
T cd06649           4 DDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   83 (331)
T ss_pred             cccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEee
Confidence            35788889999999999999998 46889999998643333345779999999999999999999999999999999999


Q ss_pred             cccCCChhhhccccccc---------ceeeeeecceeee
Q 016905          349 FMQNLSVAYRLRVSHKI---------YTKIISLSSLHCF  378 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~  378 (380)
                      |+++|+|.++++.....         .+++.||.|||+.
T Consensus        84 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~  122 (331)
T cd06649          84 HMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREK  122 (331)
T ss_pred             cCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999764432         3488999999975

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.53  E-value=4.7e-15  Score=143.45  Aligned_cols=112  Identities=19%  Similarity=0.259  Sum_probs=93.8

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc--CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeE
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY--YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~--~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~l  345 (380)
                      ..++|+..+.||+|+||.||++.. .+++.+|+|++...  ......+.+.+|+.++..++||||+++++++..++..++
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~l  120 (370)
T cd05596          41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYM  120 (370)
T ss_pred             CHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEE
Confidence            456788899999999999999998 56889999999532  122334568899999999999999999999999999999


Q ss_pred             EeecccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      ||||+++|+|.++++....        ..+++.||+|||+++|
T Consensus       121 v~Ey~~gg~L~~~l~~~~l~~~~~~~~~~qi~~aL~~LH~~~i  163 (370)
T cd05596         121 VMEYMPGGDLVNLMSNYDIPEKWARFYTAEVVLALDAIHSMGF  163 (370)
T ss_pred             EEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999999999999875421        1348899999999875

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.53  E-value=1.3e-14  Score=138.39  Aligned_cols=109  Identities=19%  Similarity=0.210  Sum_probs=92.6

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .++|+..+.||+|+||.||++.. .++..+|+|.+...........+.+|++++.+++||||+++++++..++..++|||
T Consensus         4 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   83 (333)
T cd06650           4 DDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   83 (333)
T ss_pred             hhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEe
Confidence            46788889999999999999998 46889999988643333345679999999999999999999999999999999999


Q ss_pred             cccCCChhhhccccccc---------ceeeeeecceeee
Q 016905          349 FMQNLSVAYRLRVSHKI---------YTKIISLSSLHCF  378 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~  378 (380)
                      |+++|+|.++++.....         .+++.||+|||+.
T Consensus        84 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~  122 (333)
T cd06650          84 HMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREK  122 (333)
T ss_pred             cCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999754332         3488999999964

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.53  E-value=4.6e-15  Score=137.96  Aligned_cols=109  Identities=21%  Similarity=0.185  Sum_probs=92.0

Q ss_pred             CcccccccccCCCeeEEEEEeC-CCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          272 NFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      +|+..+.||.|.-|+||.+.+. ++..+|+|++....  +.......+.|-++|+.++||.++.|++.+..++..++|||
T Consensus        78 ~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~me  157 (459)
T KOG0610|consen   78 HFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVME  157 (459)
T ss_pred             HHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEEe
Confidence            4555678999999999999994 46899999996322  23345667889999999999999999999999999999999


Q ss_pred             cccCCChhhhccccccc-----------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKI-----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~-----------~~~~~aL~yLH~~~i  380 (380)
                      ||+||+|...++++...           .+++.||+|||-+||
T Consensus       158 yCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHmlGi  200 (459)
T KOG0610|consen  158 YCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHMLGI  200 (459)
T ss_pred             cCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhhce
Confidence            99999999999865432           349999999999997

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.52  E-value=3.7e-15  Score=135.11  Aligned_cols=111  Identities=20%  Similarity=0.285  Sum_probs=89.2

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeC--CCcee
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTT--SSERI  344 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~--~~~~~  344 (380)
                      ..++|+..+.|++|+||.||+|+. .+++.||+|+++... ..+-.-.-.+||.+|.+++|||||.+..+...  -+..|
T Consensus        74 sv~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy  153 (419)
T KOG0663|consen   74 SVEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIY  153 (419)
T ss_pred             cHHHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceee
Confidence            345677789999999999999998 678999999997332 22233445899999999999999999887754  45799


Q ss_pred             EEeecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      ||||||+. ||..+++..+..          .|++.|++|||+..|
T Consensus       154 ~VMe~~Eh-DLksl~d~m~q~F~~~evK~L~~QlL~glk~lH~~wi  198 (419)
T KOG0663|consen  154 IVMEYVEH-DLKSLMETMKQPFLPGEVKTLMLQLLRGLKHLHDNWI  198 (419)
T ss_pred             eeHHHHHh-hHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhhcee
Confidence            99999998 999999865422          348999999998654

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.52  E-value=1.3e-14  Score=137.66  Aligned_cols=104  Identities=19%  Similarity=0.192  Sum_probs=88.0

Q ss_pred             cccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCC
Q 016905          277 NIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNL  353 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~G  353 (380)
                      ++||+|+||.||++.. .+|+.+|+|++....  .......+.+|++++.+++||||+++.+++...+..++||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~   80 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence            3689999999999998 578999999996321  2233566889999999999999999999999999999999999999


Q ss_pred             Chhhhccccccc---------ceeeeeecceeeecC
Q 016905          354 SVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       354 sL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +|.+++...+..         .+++.||+|||+.||
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i  116 (323)
T cd05571          81 ELFFHLSRERVFSEDRARFYGAEIVSALGYLHSCDV  116 (323)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            999998754432         358999999999886

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.52  E-value=1.4e-14  Score=136.45  Aligned_cols=107  Identities=19%  Similarity=0.202  Sum_probs=90.9

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      ++|+..+.||+|+||.||++.. .++..+|+|.+...........+.+|++++.+++||||+++++++..++..++||||
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey   80 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEH   80 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeec
Confidence            3678889999999999999998 568899999886433333456789999999999999999999999999999999999


Q ss_pred             ccCCChhhhccccccc---------ceeeeeecceee
Q 016905          350 MQNLSVAYRLRVSHKI---------YTKIISLSSLHC  377 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~  377 (380)
                      +++|+|.++++.....         .+++.||+|||+
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~  117 (308)
T cd06615          81 MDGGSLDQVLKKAGRIPENILGKISIAVLRGLTYLRE  117 (308)
T ss_pred             cCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999754332         348899999997

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.52  E-value=1.3e-14  Score=138.26  Aligned_cols=110  Identities=18%  Similarity=0.263  Sum_probs=92.3

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc--CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY--YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~--~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|+..+.||+|+||.||++.. .+++.||+|++...  ......+.|.+|+.++..++|+||+++++++..++..++||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVM   80 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEE
Confidence            3677889999999999999998 56899999998631  12234566889999999999999999999999999999999


Q ss_pred             ecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.+++.....          ..+++.||+|||+++|
T Consensus        81 e~~~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  123 (331)
T cd05597          81 DYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQLGY  123 (331)
T ss_pred             ecCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            99999999999965321          1348899999999875

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.52  E-value=7.9e-15  Score=141.87  Aligned_cols=114  Identities=19%  Similarity=0.287  Sum_probs=94.9

Q ss_pred             HHHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc--CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCce
Q 016905          267 QLATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY--YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSER  343 (380)
Q Consensus       267 ~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~--~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~  343 (380)
                      ....++|+..+.||+|+||.||++.. .+++.+|+|.+...  ......+.+.+|+.++..++||||+++++++..++..
T Consensus        39 ~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~  118 (370)
T cd05621          39 QMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYL  118 (370)
T ss_pred             CCCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEE
Confidence            33456788899999999999999998 46889999998532  1223356688999999999999999999999999999


Q ss_pred             eEEeecccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      ++||||+++|+|.+++.....        ..+++.||+|||+++|
T Consensus       119 ~lv~Ey~~gg~L~~~l~~~~~~~~~~~~~~~qil~aL~~LH~~~I  163 (370)
T cd05621         119 YMVMEYMPGGDLVNLMSNYDVPEKWAKFYTAEVVLALDAIHSMGL  163 (370)
T ss_pred             EEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            999999999999999875421        1358999999999875

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.52  E-value=1.9e-14  Score=134.14  Aligned_cols=109  Identities=21%  Similarity=0.319  Sum_probs=91.2

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      ++|...+.||+|+||.||+|.. .++..||+|++...........+.+|++++.+++||||+++++++..++..++||||
T Consensus         5 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~   84 (288)
T cd07871           5 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFEY   84 (288)
T ss_pred             ccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEeC
Confidence            4577889999999999999998 468899999986433333456788999999999999999999999988899999999


Q ss_pred             ccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      ++ |+|.+++......          .+++.||+|||+++|
T Consensus        85 ~~-~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i  124 (288)
T cd07871          85 LD-SDLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCHKRKI  124 (288)
T ss_pred             CC-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            97 5999988654321          358999999999886

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.52  E-value=1.6e-14  Score=137.07  Aligned_cols=104  Identities=19%  Similarity=0.182  Sum_probs=87.5

Q ss_pred             cccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCC
Q 016905          277 NIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNL  353 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~G  353 (380)
                      ++||+|+||.||++.. .+|..||+|++....  .......+.+|++++.+++||||+++++++...+..++||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCC
Confidence            3689999999999997 568999999996321  2234566789999999999999999999999999999999999999


Q ss_pred             Chhhhccccccc---------ceeeeeecceeeecC
Q 016905          354 SVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       354 sL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +|.+++......         .+++.||+|||+.+|
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i  116 (323)
T cd05595          81 ELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDV  116 (323)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            999988754432         348999999999875

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.52  E-value=1.4e-14  Score=139.59  Aligned_cols=110  Identities=16%  Similarity=0.242  Sum_probs=93.1

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc--CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY--YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~--~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|+..+.||+|+||.||++.. .+++.||+|++...  ......+.+.+|+.++.+++||||+++++++..++..++||
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~   80 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIM   80 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            3677889999999999999998 56899999999632  12234567889999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.++++.....         .+++.||+|||++||
T Consensus        81 E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~~L~~lH~~gi  122 (360)
T cd05627          81 EFLPGGDMMTLLMKKDTLSEEATQFYIAETVLAIDAIHQLGF  122 (360)
T ss_pred             eCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            999999999999765432         348899999999885

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.51  E-value=7.7e-15  Score=136.73  Aligned_cols=112  Identities=21%  Similarity=0.302  Sum_probs=92.1

Q ss_pred             HhcCcccccccccCCCeeEEEEEeC------CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCc
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVLS------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSE  342 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~  342 (380)
                      .+++|+..+.||+|+||.||+|...      .+..||+|.+...........|.+|+.++.+++||||+++++++...+.
T Consensus         4 ~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   83 (288)
T cd05061           4 SREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQP   83 (288)
T ss_pred             cHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC
Confidence            4567888899999999999999752      2458999988643333345678899999999999999999999999999


Q ss_pred             eeEEeecccCCChhhhcccccc-------------------cceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHK-------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~-------------------~~~~~~aL~yLH~~~i  380 (380)
                      .++||||+++|+|.++++....                   ..+++.||+|||+++|
T Consensus        84 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i  140 (288)
T cd05061          84 TLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKF  140 (288)
T ss_pred             cEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999974321                   1348889999999875

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.51  E-value=1.2e-14  Score=135.01  Aligned_cols=110  Identities=23%  Similarity=0.344  Sum_probs=91.2

Q ss_pred             cCcccccccccCCCeeEEEEEe-----CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeE
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-----SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-----~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~l  345 (380)
                      ++|+..+.||+|+||.||+|..     .++..+|+|.+...........|.+|++++.+++||||+++++++..++..++
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l   84 (283)
T cd05090           5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCM   84 (283)
T ss_pred             hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceEE
Confidence            4566778999999999999985     34678999999644334445789999999999999999999999999999999


Q ss_pred             EeecccCCChhhhccccc--------------------------ccceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSH--------------------------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~--------------------------~~~~~~~aL~yLH~~~i  380 (380)
                      ||||+++|+|.+++....                          ...+++.||+|||+.+|
T Consensus        85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i  145 (283)
T cd05090          85 LFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFF  145 (283)
T ss_pred             EEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhcCe
Confidence            999999999999985322                          11348899999999875

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.51  E-value=1.5e-14  Score=140.69  Aligned_cols=112  Identities=19%  Similarity=0.224  Sum_probs=96.1

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCC-chHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSP-GGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      ....|.....||+|.|+.|..|+. .++..||+|.+.+..-. ...+.+.+|+++|..+.|||||+++.+...+...|+|
T Consensus        54 ~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lylV  133 (596)
T KOG0586|consen   54 SVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYLV  133 (596)
T ss_pred             cccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEEE
Confidence            345677788999999999999998 67999999999754332 2345589999999999999999999999999999999


Q ss_pred             eecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |||..+|.++++|...+.+         +|++.|++|||+++|
T Consensus       134 ~eya~~ge~~~yl~~~gr~~e~~ar~~F~q~vsaveYcH~k~i  176 (596)
T KOG0586|consen  134 MEYASGGELFDYLVKHGRMKEKEARAKFRQIVSAVEYCHSKNI  176 (596)
T ss_pred             EEeccCchhHHHHHhcccchhhhhhhhhHHHHHHHHHHhhcce
Confidence            9999999999999754443         559999999999875

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.51  E-value=1.7e-14  Score=136.32  Aligned_cols=109  Identities=24%  Similarity=0.379  Sum_probs=89.7

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCc----EEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeE
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNT----KVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~----~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~l  345 (380)
                      .+|+..+.||+|+||.||+|++ .++.    .||+|.+.........++|.+|+.++..++||||++++|+|... ..++
T Consensus         7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-~~~~   85 (316)
T cd05108           7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQL   85 (316)
T ss_pred             hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-Ccee
Confidence            4578889999999999999987 3344    48999986443444567899999999999999999999999864 5679


Q ss_pred             EeecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      |+||+++|+|.++++....          ..+++.||+|||+.+|
T Consensus        86 v~e~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i  130 (316)
T cd05108          86 ITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEERRL  130 (316)
T ss_pred             eeecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHhcCe
Confidence            9999999999999976432          1358999999999875

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.51  E-value=1.3e-14  Score=139.01  Aligned_cols=110  Identities=20%  Similarity=0.232  Sum_probs=93.8

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|+..+.||+|+||.||+|.. .+++.||||++....  .....+.+.+|++++..++||||+++++++..++..++||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVM   80 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEE
Confidence            3677889999999999999998 468999999996321  2234677899999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.+++......         .+++.||+|||+.||
T Consensus        81 e~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~gi  122 (350)
T cd05573          81 EYMPGGDLMNLLIRKDVFPEETARFYIAELVLALDSVHKLGF  122 (350)
T ss_pred             cCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            999999999999765332         348999999999875

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.51  E-value=1.8e-14  Score=135.93  Aligned_cols=102  Identities=20%  Similarity=0.228  Sum_probs=86.6

Q ss_pred             cccCCCeeEEEEEe-CCCcEEEEEEeccc--CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCCCh
Q 016905          279 IGQGGFGKVYKGVL-SDNTKVAVKRLQDY--YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSV  355 (380)
Q Consensus       279 lg~G~~g~Vy~~~~-~~g~~vavK~l~~~--~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~GsL  355 (380)
                      ||+|+||.||++.. .+++.||+|++...  ........+.+|++++.+++||||+++++++..++..++||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L   80 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGEL   80 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcH
Confidence            69999999999998 46889999998632  1233456788999999999999999999999999999999999999999


Q ss_pred             hhhccccccc---------ceeeeeecceeeecC
Q 016905          356 AYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       356 ~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      .+++......         .+++.||+|||+++|
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  114 (312)
T cd05585          81 FHHLQREGRFDLSRARFYTAELLCALENLHKFNV  114 (312)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999754432         348899999999875

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.51  E-value=2.5e-14  Score=136.04  Aligned_cols=104  Identities=19%  Similarity=0.191  Sum_probs=87.9

Q ss_pred             cccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCC
Q 016905          277 NIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNL  353 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~G  353 (380)
                      ++||+|+||.||++.. .+++.||+|++....  .......+.+|++++..++||||+++.+++..++..++||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g   80 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGG   80 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCC
Confidence            3689999999999997 568999999996321  2334567889999999999999999999999999999999999999


Q ss_pred             Chhhhccccccc---------ceeeeeecceeeecC
Q 016905          354 SVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       354 sL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +|.+++......         .+++.||+|||+++|
T Consensus        81 ~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~~i  116 (328)
T cd05593          81 ELFFHLSRERVFSEDRTRFYGAEIVSALDYLHSGKI  116 (328)
T ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            999988654332         348999999999875

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.51  E-value=2.8e-14  Score=131.18  Aligned_cols=110  Identities=17%  Similarity=0.240  Sum_probs=92.8

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .++|+..+.||+|+||.||+|+. .+++.||+|++... .....+.+.+|+.++.+++||||+++++++..++..++|||
T Consensus         8 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~-~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e   86 (267)
T cd06646           8 QHDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLE-PGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICME   86 (267)
T ss_pred             hhhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecC-ccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEe
Confidence            34677789999999999999997 67889999998532 22345678899999999999999999999999999999999


Q ss_pred             cccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.++++.....         .+++.|++|||+.+|
T Consensus        87 ~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  127 (267)
T cd06646          87 YCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLAYLHSKGK  127 (267)
T ss_pred             CCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            99999999998754332         348999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.50  E-value=1.8e-14  Score=134.10  Aligned_cols=108  Identities=19%  Similarity=0.252  Sum_probs=89.6

Q ss_pred             cccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      |+..+.||+|+||.||++.. .+|+.||+|.+....  .......+.+|++++.+++|+||+++.+++..++..++||||
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e~   81 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEEe
Confidence            66778999999999999997 679999999986321  122345688999999999999999999999999999999999


Q ss_pred             ccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      +++|+|.+++.....           ..+++.||+|||+++|
T Consensus        82 ~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  123 (285)
T cd05631          82 MNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRERI  123 (285)
T ss_pred             cCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            999999988754321           1348899999999875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.50  E-value=1.3e-14  Score=140.30  Aligned_cols=118  Identities=19%  Similarity=0.288  Sum_probs=97.6

Q ss_pred             HHHHHHHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc--CCCchHHHHHHHHHHHhcCcCCCCccceeeeeC
Q 016905          263 CRELQLATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY--YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT  339 (380)
Q Consensus       263 ~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~--~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~  339 (380)
                      ..++....++|+..+.||+|+||.||++.. .+++.+|+|.+...  ......+.+.+|+.++..++||||+++++++..
T Consensus        35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~  114 (371)
T cd05622          35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  114 (371)
T ss_pred             HhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEc
Confidence            344555678899999999999999999998 56889999998531  122335568899999999999999999999999


Q ss_pred             CCceeEEeecccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          340 SSERILVYPFMQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       340 ~~~~~lV~Ey~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      ++..++||||+++|+|.++++....        ..+++.||+|||+++|
T Consensus       115 ~~~~~lv~Ey~~gg~L~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i  163 (371)
T cd05622         115 DRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGF  163 (371)
T ss_pred             CCEEEEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            9999999999999999999875421        1348899999999875

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.50  E-value=2.1e-14  Score=133.68  Aligned_cols=109  Identities=20%  Similarity=0.278  Sum_probs=89.8

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      +|+..++||+|+||.||++.. .+++.||+|++....  .......+.+|+.++.+++||||+++++++..++..++|||
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEe
Confidence            366778999999999999997 568999999986321  12224567899999999999999999999999899999999


Q ss_pred             cccCCChhhhcccccc--c---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK--I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~--~---------~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.++++....  .         .+++.||+|||+.+|
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  123 (285)
T cd05605          81 LMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRERI  123 (285)
T ss_pred             ccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            9999999988864321  1         348899999999875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.50  E-value=2.2e-15  Score=142.15  Aligned_cols=109  Identities=21%  Similarity=0.365  Sum_probs=90.5

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCc-CCCCccceeeeeCCC-ceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI-HKNLLQLIGYCTTSS-ERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~-H~Niv~l~g~~~~~~-~~~lV~  347 (380)
                      ++|...+.||.|.||.||+|+- ++|..||||+++...-.-+.-.=.+|+..|.++. |||||++..++.+.+ ..++||
T Consensus        10 ~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~fVf   89 (538)
T KOG0661|consen   10 DRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYFVF   89 (538)
T ss_pred             HHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEeeeH
Confidence            4566678999999999999997 6799999999975433222222368999999998 999999999999877 899999


Q ss_pred             ecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      |||+. +|+++++++...          .|+++||+|+|+.|+
T Consensus        90 E~Md~-NLYqLmK~R~r~fse~~irnim~QilqGL~hiHk~Gf  131 (538)
T KOG0661|consen   90 EFMDC-NLYQLMKDRNRLFSESDIRNIMYQILQGLAHIHKHGF  131 (538)
T ss_pred             Hhhhh-hHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHhcCc
Confidence            99986 899999876443          459999999999884

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.50  E-value=2.3e-14  Score=132.05  Aligned_cols=103  Identities=31%  Similarity=0.360  Sum_probs=85.4

Q ss_pred             ccccCCCeeEEEEEeC---CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCCC
Q 016905          278 IIGQGGFGKVYKGVLS---DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLS  354 (380)
Q Consensus       278 ~lg~G~~g~Vy~~~~~---~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~Gs  354 (380)
                      .||+|+||.||+|...   .+..+|+|.++..........|.+|+.++.+++||||++++|++.+....++||||+++|+
T Consensus         2 ~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~   81 (269)
T cd05087           2 EIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLGD   81 (269)
T ss_pred             cccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCCc
Confidence            5899999999999863   3457999998654434445679999999999999999999999999889999999999999


Q ss_pred             hhhhcccccc--------------cceeeeeecceeeecC
Q 016905          355 VAYRLRVSHK--------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       355 L~~~L~~~~~--------------~~~~~~aL~yLH~~~i  380 (380)
                      |.++++....              ..+++.|++|||+.+|
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i  121 (269)
T cd05087          82 LKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNNF  121 (269)
T ss_pred             HHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCE
Confidence            9999874321              1348899999998764

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.50  E-value=3.2e-14  Score=133.61  Aligned_cols=110  Identities=21%  Similarity=0.321  Sum_probs=91.4

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .++|+..+.||+|+||.||+|.. .+++.||||++...........+.+|+.++++++||||+++++++..++..++|||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e   83 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFE   83 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEE
Confidence            46788889999999999999998 46899999999643333334567899999999999999999999999999999999


Q ss_pred             cccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      |++ |+|.+++.....          ..+++.||+|||+.+|
T Consensus        84 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i  124 (303)
T cd07869          84 YVH-TDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQRYI  124 (303)
T ss_pred             CCC-cCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            996 688888764322          2458999999999875

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.50  E-value=1.2e-14  Score=138.98  Aligned_cols=93  Identities=24%  Similarity=0.380  Sum_probs=77.1

Q ss_pred             HhcCcccccccccCCCeeEEEEEe------CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCC-
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTS-  340 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~-  340 (380)
                      ..++|+..+.||+|+||.||+|..      .+++.||||+++........+.+.+|+.++.++ +||||++++++|... 
T Consensus         5 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~   84 (343)
T cd05103           5 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG   84 (343)
T ss_pred             chhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCC
Confidence            345688889999999999999974      357899999996443334456788999999999 789999999988754 


Q ss_pred             CceeEEeecccCCChhhhccc
Q 016905          341 SERILVYPFMQNLSVAYRLRV  361 (380)
Q Consensus       341 ~~~~lV~Ey~~~GsL~~~L~~  361 (380)
                      ...++||||+++|+|.++++.
T Consensus        85 ~~~~lv~ey~~~g~L~~~i~~  105 (343)
T cd05103          85 GPLMVIVEFCKFGNLSNYLRS  105 (343)
T ss_pred             CceEEEEeccCCCcHHHHHHh
Confidence            457899999999999999875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.50  E-value=3.5e-14  Score=129.08  Aligned_cols=104  Identities=26%  Similarity=0.405  Sum_probs=88.1

Q ss_pred             cccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCCChh
Q 016905          277 NIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVA  356 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~GsL~  356 (380)
                      ++||+|+||.||+|..+++..+|+|.+...........|.+|++++.+++||||+++++++...+..++||||+++|+|.
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   80 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFL   80 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcHH
Confidence            36899999999999988889999999865433334567999999999999999999999999999999999999999999


Q ss_pred             hhccccccc----------ceeeeeecceeeecC
Q 016905          357 YRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       357 ~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      +++......          .+++.+|.|+|+.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~  114 (250)
T cd05085          81 SFLRKKKDELKTKQLVKFALDAAAGMAYLESKNC  114 (250)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            998653321          237889999998874

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.50  E-value=2.6e-14  Score=130.87  Aligned_cols=109  Identities=22%  Similarity=0.282  Sum_probs=92.8

Q ss_pred             hcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      .++|+..+.||+|+||.||+|...++..||+|.+...  ....+.|.+|+.++.+++|+||+++++++...+..+++|||
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   82 (261)
T cd05072           5 RESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPG--TMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEY   82 (261)
T ss_pred             hHHeEEeeecCCcCCceEEEEEecCCceEEEEEccCC--chhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEec
Confidence            3567788999999999999999888889999998532  22467899999999999999999999999999999999999


Q ss_pred             ccCCChhhhccccccc-----------ceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHKI-----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~~-----------~~~~~aL~yLH~~~i  380 (380)
                      +++|+|.++++.....           .+++.||+|||+.++
T Consensus        83 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~~i  124 (261)
T cd05072          83 MAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNY  124 (261)
T ss_pred             CCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999999999753211           348899999998874

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.50  E-value=8.4e-15  Score=141.12  Aligned_cols=111  Identities=20%  Similarity=0.275  Sum_probs=93.9

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ....|..-..||+|+.|.||.+.- .+++.||||++.. ..+...+-..+|+.+|+..+|+|||+++..|...++.|+||
T Consensus       271 P~~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l-~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVM  349 (550)
T KOG0578|consen  271 PRSKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDL-RKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVM  349 (550)
T ss_pred             hhhhhcchhhhccccccceeeeeeccCCceEEEEEEEe-ccCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEE
Confidence            344566778899999999999987 6788999999953 23334566789999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccc--------ccceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSH--------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~--------~~~~~~~aL~yLH~~~i  380 (380)
                      |||++|+|.+.+....        ..++++.||+|||..||
T Consensus       350 Eym~ggsLTDvVt~~~~~E~qIA~Icre~l~aL~fLH~~gI  390 (550)
T KOG0578|consen  350 EYMEGGSLTDVVTKTRMTEGQIAAICREILQGLKFLHARGI  390 (550)
T ss_pred             eecCCCchhhhhhcccccHHHHHHHHHHHHHHHHHHHhcce
Confidence            9999999999987542        23569999999999886

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.50  E-value=2.7e-14  Score=131.42  Aligned_cols=110  Identities=25%  Similarity=0.334  Sum_probs=91.1

Q ss_pred             cCcccccccccCCCeeEEEEEeC-C---CcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLS-D---NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~-~---g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      .+|+..+.||+|+||.||+|... +   +..+|+|.+.........+.|.+|+.++.+++||||+++++++..++..++|
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   83 (267)
T cd05066           4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIV   83 (267)
T ss_pred             HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEE
Confidence            45777899999999999999872 2   3479999986443344467899999999999999999999999999999999


Q ss_pred             eecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.++++.....          .+++.|++|||+.+|
T Consensus        84 ~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i  127 (267)
T cd05066          84 TEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDMGY  127 (267)
T ss_pred             EEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            9999999999999754321          337899999998874

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.49  E-value=1.5e-14  Score=133.93  Aligned_cols=112  Identities=21%  Similarity=0.324  Sum_probs=92.5

Q ss_pred             HhcCcccccccccCCCeeEEEEEeC------CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCc
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVLS------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSE  342 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~  342 (380)
                      .+++|+..+.||+|+||.||+|...      .+..||||++..........+|.+|+.++.+++||||+++++++...+.
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~   83 (277)
T cd05062           4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQP   83 (277)
T ss_pred             cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC
Confidence            4567888999999999999999752      3568999998643333345679999999999999999999999999999


Q ss_pred             eeEEeecccCCChhhhcccccc-------------------cceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHK-------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~-------------------~~~~~~aL~yLH~~~i  380 (380)
                      .++||||+++|+|.++++..+.                   ..+++.||+|||+.++
T Consensus        84 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~  140 (277)
T cd05062          84 TLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANKF  140 (277)
T ss_pred             eEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            9999999999999999875321                   1248899999998774

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.49  E-value=1.9e-14  Score=133.07  Aligned_cols=110  Identities=27%  Similarity=0.431  Sum_probs=92.0

Q ss_pred             cCcccccccccCCCeeEEEEEeC------CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCcee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLS------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~  344 (380)
                      ++|...+.||+|+||.||+|...      ++..||||.+.........+.|.+|++++.+++|+||+++++++...+..+
T Consensus         5 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   84 (280)
T cd05049           5 DTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPPI   84 (280)
T ss_pred             HHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCeE
Confidence            34666788999999999999863      247899999965433335678999999999999999999999999999999


Q ss_pred             EEeecccCCChhhhcccccc-----------------------cceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHK-----------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~-----------------------~~~~~~aL~yLH~~~i  380 (380)
                      +||||+++|+|.++++....                       ..+++.|++|||+.+|
T Consensus        85 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i  143 (280)
T cd05049          85 MVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQHF  143 (280)
T ss_pred             EEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCe
Confidence            99999999999999975421                       2348899999999875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.49  E-value=3.7e-14  Score=130.54  Aligned_cols=103  Identities=30%  Similarity=0.359  Sum_probs=85.3

Q ss_pred             ccccCCCeeEEEEEeCC---CcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCCC
Q 016905          278 IIGQGGFGKVYKGVLSD---NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLS  354 (380)
Q Consensus       278 ~lg~G~~g~Vy~~~~~~---g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~Gs  354 (380)
                      .||+|+||.||+|...+   ...+++|.+...........|.+|++.+..++||||+++++++...+..++||||+++|+
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g~   81 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLGD   81 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCCc
Confidence            58999999999997633   457899987644334446778999999999999999999999999999999999999999


Q ss_pred             hhhhcccccc--------------cceeeeeecceeeecC
Q 016905          355 VAYRLRVSHK--------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       355 L~~~L~~~~~--------------~~~~~~aL~yLH~~~i  380 (380)
                      |.++++....              ..+++.||+|||+.+|
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  121 (269)
T cd05042          82 LKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQADF  121 (269)
T ss_pred             HHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhcCE
Confidence            9999875322              1248899999999875

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.49  E-value=2.5e-14  Score=136.19  Aligned_cols=110  Identities=18%  Similarity=0.246  Sum_probs=92.0

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc--CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY--YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~--~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|+..+.||+|+||.||+++. .+++.||+|.+...  ......+.|.+|..++..++|+||+++.+++..++..++||
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~   80 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVM   80 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            4678889999999999999998 46889999998532  12233556889999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccc-cc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSH-KI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~-~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.++++... ..         .+++.||+|||+++|
T Consensus        81 Ey~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH~~~i  123 (331)
T cd05624          81 DYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQLHY  123 (331)
T ss_pred             eCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999999999997532 21         348899999999875

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.49  E-value=1.7e-14  Score=134.82  Aligned_cols=110  Identities=19%  Similarity=0.308  Sum_probs=90.6

Q ss_pred             cCcccccccccCCCeeEEEEEeCC---------------CcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCcccee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLSD---------------NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIG  335 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~~---------------g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g  335 (380)
                      +.|+..+.||+|+||.||++....               ...||+|.++..........|.+|++++.+++|+|++++++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~   84 (295)
T cd05097           5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLG   84 (295)
T ss_pred             HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEE
Confidence            467778899999999999987632               23589999865434444667999999999999999999999


Q ss_pred             eeeCCCceeEEeecccCCChhhhccccc---------------------ccceeeeeecceeeecC
Q 016905          336 YCTTSSERILVYPFMQNLSVAYRLRVSH---------------------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       336 ~~~~~~~~~lV~Ey~~~GsL~~~L~~~~---------------------~~~~~~~aL~yLH~~~i  380 (380)
                      ++...+..++||||+++|+|.++++...                     ...+++.||+|||+++|
T Consensus        85 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i  150 (295)
T cd05097          85 VCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLNF  150 (295)
T ss_pred             EEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhcCe
Confidence            9999999999999999999999986432                     12348899999999875

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.49  E-value=2.1e-14  Score=137.50  Aligned_cols=113  Identities=16%  Similarity=0.225  Sum_probs=97.7

Q ss_pred             HHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc--CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCcee
Q 016905          268 LATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY--YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       268 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~--~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~  344 (380)
                      ...++|+...+||+|+||.||.++- .+|..+|+|++++.  ....+.+-...|-++|...++|.||+|+-.+.+.+..|
T Consensus       138 ~~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LY  217 (550)
T KOG0605|consen  138 LSLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLY  217 (550)
T ss_pred             CCcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeE
Confidence            3567899999999999999999987 66999999999742  23345677889999999999999999999999999999


Q ss_pred             EEeecccCCChhhhcccccccc---------eeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHKIY---------TKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~~~---------~~~~aL~yLH~~~i  380 (380)
                      |||||+||||+..+|...+...         +++.|++-+|+.|+
T Consensus       218 LiMEylPGGD~mTLL~~~~~L~e~~arfYiaE~vlAI~~iH~~gy  262 (550)
T KOG0605|consen  218 LIMEYLPGGDMMTLLMRKDTLTEDWARFYIAETVLAIESIHQLGY  262 (550)
T ss_pred             EEEEecCCccHHHHHHhcCcCchHHHHHHHHHHHHHHHHHHHcCc
Confidence            9999999999999998765553         38889999999885

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.49  E-value=5.5e-15  Score=135.71  Aligned_cols=103  Identities=24%  Similarity=0.438  Sum_probs=81.9

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCC-----ceeE
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS-----ERIL  345 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~-----~~~l  345 (380)
                      .|...+++|+|+||.||+|++ ++++.||||+..++..     .--+|.++|++++|||||+|+-++....     ..-+
T Consensus        25 ~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r-----~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnl   99 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR-----YKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNL   99 (364)
T ss_pred             EEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCC-----cCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHH
Confidence            355678999999999999998 5689999999864321     2247899999999999999998876432     2358


Q ss_pred             EeecccCCChhhhcccc----cc---------cceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVS----HK---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~----~~---------~~~~~~aL~yLH~~~i  380 (380)
                      ||||||. +|+++++..    ..         .+|+.+||+|||++||
T Consensus       100 VleymP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~I  146 (364)
T KOG0658|consen  100 VLEYMPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHGI  146 (364)
T ss_pred             HHHhchH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcCc
Confidence            9999998 999999841    22         2459999999999886

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.49  E-value=2.9e-14  Score=135.57  Aligned_cols=110  Identities=16%  Similarity=0.217  Sum_probs=92.7

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|+..+.||+|+||.||++.. .+++.||+|++....  .....+.+.+|+.++..++||||+++.+++...+..++||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVM   80 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEE
Confidence            3678889999999999999998 568999999996322  2234567889999999999999999999999989999999


Q ss_pred             ecccCCChhhhccccc-cc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSH-KI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~-~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.++++... ..         .+++.||+|||+.+|
T Consensus        81 e~~~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~i  123 (330)
T cd05601          81 EYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQMGY  123 (330)
T ss_pred             CCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999999999997642 21         348999999999875

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.49  E-value=1.6e-14  Score=132.19  Aligned_cols=111  Identities=23%  Similarity=0.354  Sum_probs=94.4

Q ss_pred             HhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      +..+|+..++||+|+||.||+|...++..+|+|.+... .......+.+|+.++.+++|+||+++++++...+..++|||
T Consensus         4 ~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   82 (261)
T cd05148           4 PREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSD-DLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITE   82 (261)
T ss_pred             cHHHHHHhhhhccCCCccEEEeEecCCCcEEEEecccc-chhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEe
Confidence            45567788999999999999999977999999998643 22245678999999999999999999999999999999999


Q ss_pred             cccCCChhhhccccccc-----------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKI-----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~-----------~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.++++.....           .+++.||+|||+.+|
T Consensus        83 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i  125 (261)
T cd05148          83 LMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQNS  125 (261)
T ss_pred             ecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            99999999999753221           348899999999875

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.49  E-value=2.9e-14  Score=134.90  Aligned_cols=104  Identities=20%  Similarity=0.263  Sum_probs=86.6

Q ss_pred             cccccCCCeeEEEEEe----CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeeccc
Q 016905          277 NIIGQGGFGKVYKGVL----SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQ  351 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~----~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~  351 (380)
                      +.||+|+||.||++..    .+|+.+|+|++.... .......+.+|++++.+++||||+++++++..++..++||||++
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~   81 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLR   81 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCC
Confidence            5699999999999875    468899999996322 22234567889999999999999999999999999999999999


Q ss_pred             CCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          352 NLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       352 ~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +|+|.++++.....         .+++.||+|||+++|
T Consensus        82 ~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i  119 (318)
T cd05582          82 GGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGI  119 (318)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            99999998754332         348999999999875

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.49  E-value=2.2e-14  Score=132.86  Aligned_cols=102  Identities=27%  Similarity=0.318  Sum_probs=83.3

Q ss_pred             ccccCCCeeEEEEEeC-------------------------CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCcc
Q 016905          278 IIGQGGFGKVYKGVLS-------------------------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQ  332 (380)
Q Consensus       278 ~lg~G~~g~Vy~~~~~-------------------------~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~  332 (380)
                      .||+|+||.||+|.+.                         ....|++|.+... ......+|.+|+++++.++||||++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~-~~~~~~~~~~~~~~~~~l~h~niv~   80 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPS-HRDIALAFFETASLMSQVSHIHLAF   80 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChH-HHHHHHHHHHHHHHHhcCCCCCeee
Confidence            5899999999999751                         1135899988532 2233567899999999999999999


Q ss_pred             ceeeeeCCCceeEEeecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          333 LIGYCTTSSERILVYPFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       333 l~g~~~~~~~~~lV~Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      ++|+|...+..++||||+++|+|.++++....          ..+++.||+|||+++|
T Consensus        81 ~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i  138 (274)
T cd05076          81 VHGVCVRGSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLEDKNL  138 (274)
T ss_pred             EEEEEEeCCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCc
Confidence            99999999999999999999999999865322          1348999999999875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.48  E-value=2.8e-14  Score=134.07  Aligned_cols=110  Identities=23%  Similarity=0.385  Sum_probs=90.7

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCc--EEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeEE
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNT--KVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~--~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      ++|+..+.||+|+||.||+|.. .++.  .+|+|++.........+.|.+|++++.++ +||||+++++++..++..++|
T Consensus         7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv   86 (303)
T cd05088           7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   86 (303)
T ss_pred             hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEE
Confidence            4677788999999999999997 3454  46888875433444567899999999999 899999999999999999999


Q ss_pred             eecccCCChhhhcccccc-------------------------cceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHK-------------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~-------------------------~~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.++++....                         ..+++.|++|||+.||
T Consensus        87 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi  145 (303)
T cd05088          87 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQF  145 (303)
T ss_pred             EEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999999999999975421                         1248899999999875

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.48  E-value=1.4e-14  Score=140.57  Aligned_cols=112  Identities=25%  Similarity=0.400  Sum_probs=93.9

Q ss_pred             HHHhcCcccccccccCCCeeEEEEEe--C-CCc--EEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCC
Q 016905          267 QLATDNFSESNIIGQGGFGKVYKGVL--S-DNT--KVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS  341 (380)
Q Consensus       267 ~~~~~~~~~~~~lg~G~~g~Vy~~~~--~-~g~--~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~  341 (380)
                      +..++.....+.||+|.||.||+|++  + .|.  .||||..+.+.+....+.|.+|..+|++++|||||+|+|+|.+ .
T Consensus       385 el~Re~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e-~  463 (974)
T KOG4257|consen  385 ELRRELITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVE-Q  463 (974)
T ss_pred             eeehhhccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeec-c
Confidence            34445556678999999999999998  2 333  6899998766666678899999999999999999999999986 4


Q ss_pred             ceeEEeecccCCChhhhccccccc----------ceeeeeecceeeec
Q 016905          342 ERILVYPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFS  379 (380)
Q Consensus       342 ~~~lV~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~  379 (380)
                      +.|+|||.++-|.|..||+..+..          .++..||+|||++.
T Consensus       464 P~WivmEL~~~GELr~yLq~nk~sL~l~tL~ly~~Qi~talaYLeSkr  511 (974)
T KOG4257|consen  464 PMWIVMELAPLGELREYLQQNKDSLPLRTLTLYCYQICTALAYLESKR  511 (974)
T ss_pred             ceeEEEecccchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999876553          45889999999864

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.48  E-value=3.5e-14  Score=131.99  Aligned_cols=110  Identities=18%  Similarity=0.310  Sum_probs=89.4

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      ++|+..+.||+|+||.||+++. .+++.+|+|++.... .....+.+.+|++++.+++||||+++++++..++..++|||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFE   80 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEe
Confidence            3577889999999999999998 468899999986432 23345678899999999999999999999999999999999


Q ss_pred             cccCCChhhhcccccc---------cceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~---------~~~~~~aL~yLH~~~i  380 (380)
                      |++++.+..+.+....         ..+++.||+|||+.+|
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i  121 (287)
T cd07848          81 YVEKNMLELLEEMPNGVPPEKVRSYIYQLIKAIHWCHKNDI  121 (287)
T ss_pred             cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9998877655432221         2448999999998875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.48  E-value=3.9e-14  Score=130.44  Aligned_cols=109  Identities=25%  Similarity=0.345  Sum_probs=91.0

Q ss_pred             CcccccccccCCCeeEEEEEeC-CC---cEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          272 NFSESNIIGQGGFGKVYKGVLS-DN---TKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~~-~g---~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      +|+..+.||+|+||.||+|... ++   ..||||.+.........++|..|+.++.+++||||+++.+++..++..++||
T Consensus         5 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~   84 (269)
T cd05065           5 CVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMIIT   84 (269)
T ss_pred             HeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEEE
Confidence            4667889999999999999983 33   3699999865434445678999999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.++++.....          .+++.||+|||+.++
T Consensus        85 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~l~~al~~lH~~g~  127 (269)
T cd05065          85 EFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSEMNY  127 (269)
T ss_pred             ecCCCCcHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            999999999998754322          347899999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.48  E-value=4e-14  Score=131.53  Aligned_cols=107  Identities=16%  Similarity=0.138  Sum_probs=90.7

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      ++|+..+.||+|+||+||++.. ++++.+|+|.+.........+.|.+|++++..++||||+++++++...+..++||||
T Consensus         5 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (284)
T cd06620           5 EDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEF   84 (284)
T ss_pred             HHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEec
Confidence            4566678899999999999998 568899999886443444567899999999999999999999999999999999999


Q ss_pred             ccCCChhhhccccccc---------ceeeeeecceee
Q 016905          350 MQNLSVAYRLRVSHKI---------YTKIISLSSLHC  377 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~  377 (380)
                      +++|+|.++++..+..         .+++.+|.|||+
T Consensus        85 ~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~  121 (284)
T cd06620          85 MDCGSLDRIYKKGGPIPVEILGKIAVAVVEGLTYLYN  121 (284)
T ss_pred             CCCCCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998764322         337889999996

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>PHA02988 hypothetical protein; Provisional

Probab=99.48  E-value=4.5e-14  Score=131.43  Aligned_cols=116  Identities=13%  Similarity=0.220  Sum_probs=91.2

Q ss_pred             ccceeCHHHHHHHhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCC--chHHHHHHHHHHHhcCcCCCCccce
Q 016905          257 QLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSP--GGEAAFQREVHLISVAIHKNLLQLI  334 (380)
Q Consensus       257 ~~~~~~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~--~~~~~f~~e~~~l~~l~H~Niv~l~  334 (380)
                      +.+.++.+++...     ....||+|++|.||+|.+ +|+.||||++......  ...+.|.+|+++|.+++|||||+++
T Consensus        11 ~~~~i~~~~i~~~-----~~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~   84 (283)
T PHA02988         11 DIKCIESDDIDKY-----TSVLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIY   84 (283)
T ss_pred             cceecCHHHcCCC-----CCeEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            3455666666332     246799999999999998 7899999999643221  1246788999999999999999999


Q ss_pred             eeeeC----CCceeEEeecccCCChhhhccccccc---------ceeeeeecceeee
Q 016905          335 GYCTT----SSERILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCF  378 (380)
Q Consensus       335 g~~~~----~~~~~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~  378 (380)
                      |++.+    ....++||||+++|+|.++++.....         .+++.|+.|||+.
T Consensus        85 g~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lH~~  141 (283)
T PHA02988         85 GFIIDIVDDLPRLSLILEYCTRGYLREVLDKEKDLSFKTKLDMAIDCCKGLYNLYKY  141 (283)
T ss_pred             eeEEecccCCCceEEEEEeCCCCcHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHhc
Confidence            99876    34678999999999999999865432         2488899999974

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.48  E-value=5.1e-14  Score=133.99  Aligned_cols=104  Identities=22%  Similarity=0.276  Sum_probs=86.7

Q ss_pred             cccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeEEeecccC
Q 016905          277 NIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERILVYPFMQN  352 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~lV~Ey~~~  352 (380)
                      ++||+|+||.||++.. .+++.||+|.+....  .....+.+..|..++.++ +||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~   80 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG   80 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            3689999999999998 568899999996421  223356688999999988 799999999999999999999999999


Q ss_pred             CChhhhccccccc---------ceeeeeecceeeecC
Q 016905          353 LSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       353 GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+|.+++...+..         .+++.||+|||+++|
T Consensus        81 g~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i  117 (329)
T cd05588          81 GDLMFHMQRQRKLPEEHARFYSAEISLALNFLHERGI  117 (329)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999988654333         348899999999875

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.48  E-value=3.3e-14  Score=131.56  Aligned_cols=108  Identities=20%  Similarity=0.257  Sum_probs=90.5

Q ss_pred             cccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeeccc
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQ  351 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~  351 (380)
                      |+..+.||+|+||.||+|.. .++..||+|.+.........+.+.+|++++++++||||+++++++..++..++||||++
T Consensus         6 y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   85 (277)
T cd06642           6 FTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYLG   85 (277)
T ss_pred             HHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEccC
Confidence            45567799999999999987 56789999998643334456789999999999999999999999999999999999999


Q ss_pred             CCChhhhccccccc--------ceeeeeecceeeecC
Q 016905          352 NLSVAYRLRVSHKI--------YTKIISLSSLHCFSL  380 (380)
Q Consensus       352 ~GsL~~~L~~~~~~--------~~~~~aL~yLH~~~i  380 (380)
                      +|+|.++++.....        .+++.|++|||+.+|
T Consensus        86 ~~~L~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  122 (277)
T cd06642          86 GGSALDLLKPGPLEETYIATILREILKGLDYLHSERK  122 (277)
T ss_pred             CCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCe
Confidence            99999998653221        348899999998875

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.48  E-value=3.7e-14  Score=129.26  Aligned_cols=109  Identities=18%  Similarity=0.265  Sum_probs=92.3

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      +|+..+.||+|++|.||+++. .+++.+++|.+... ......+++.+|++++++++|||++++++++..++..++||||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEY   80 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEe
Confidence            466778899999999999998 56899999998532 2344577899999999999999999999999999999999999


Q ss_pred             ccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      +++++|.++++....           ..+++.||.|||+.+|
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i  122 (256)
T cd08529          81 AENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKKI  122 (256)
T ss_pred             CCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            999999999976411           1348899999999875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.48  E-value=5e-14  Score=129.56  Aligned_cols=111  Identities=23%  Similarity=0.396  Sum_probs=92.1

Q ss_pred             hcCcccccccccCCCeeEEEEEeC-CC---cEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLS-DN---TKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g---~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~l  345 (380)
                      .++|+..+.||+|+||.||+|+.. ++   ..+|+|.+.........+.|.+|++++.+++|||++++.+++...+..++
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   83 (268)
T cd05063           4 PSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMI   83 (268)
T ss_pred             hHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEE
Confidence            346777899999999999999983 33   37999998654334456789999999999999999999999999999999


Q ss_pred             EeecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      ||||+++|+|.++++.....          .+++.|++|||+.+|
T Consensus        84 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i  128 (268)
T cd05063          84 ITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSDMNY  128 (268)
T ss_pred             EEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            99999999999999754221          237889999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.48  E-value=2.8e-14  Score=132.08  Aligned_cols=112  Identities=25%  Similarity=0.341  Sum_probs=93.4

Q ss_pred             HhcCcccccccccCCCeeEEEEEeC------CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCc
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVLS------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSE  342 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~  342 (380)
                      .+++|+..+.||+|+||.||+|...      .+..||+|.+...........|.+|+.++.+++|+||+++++++.+.+.
T Consensus         4 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   83 (277)
T cd05036           4 PRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLP   83 (277)
T ss_pred             CHHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCC
Confidence            3466888899999999999999983      3568999988644444445679999999999999999999999999889


Q ss_pred             eeEEeecccCCChhhhcccccc----------------cceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHK----------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~----------------~~~~~~aL~yLH~~~i  380 (380)
                      .++||||+++|+|.++++..+.                ..+++.||+|||+.++
T Consensus        84 ~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i  137 (277)
T cd05036          84 RFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENHF  137 (277)
T ss_pred             cEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            9999999999999999875432                1348899999998874

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.47  E-value=1.3e-14  Score=130.95  Aligned_cols=113  Identities=22%  Similarity=0.289  Sum_probs=98.5

Q ss_pred             CHHHHHHHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeC
Q 016905          262 SCRELQLATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTT  339 (380)
Q Consensus       262 ~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~  339 (380)
                      +++++...|     .++||+|+|+.|-.++. .+|..+|||++.+. ....+....+|++++... .|+||++|+.++.+
T Consensus        74 ~F~d~YkLt-----~e~LGeGAyasVqtcv~i~t~~EYAVKiidKq-~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEd  147 (463)
T KOG0607|consen   74 KFEDMYKLT-----SELLGEGAYASVQTCVSIQTGKEYAVKIIDKQ-PGHSRSRVFREVETFYQCQGHKNILQLIEFFED  147 (463)
T ss_pred             hHHHHHHhH-----HHHhcCccceeeeeeeeeccchhhhhhhhhcC-CchHHHHHHHHHHHHHHhcCCccHHHHHHHhcc
Confidence            467777777     57899999999998886 78999999999543 455678889999999988 59999999999999


Q ss_pred             CCceeEEeecccCCChhhhcccccccce---------eeeeecceeeecC
Q 016905          340 SSERILVYPFMQNLSVAYRLRVSHKIYT---------KIISLSSLHCFSL  380 (380)
Q Consensus       340 ~~~~~lV~Ey~~~GsL~~~L~~~~~~~~---------~~~aL~yLH~~~i  380 (380)
                      ++..|||||-|.+|+|..+|++++...+         +..||++||++||
T Consensus       148 d~~FYLVfEKm~GGplLshI~~~~~F~E~EAs~vvkdia~aLdFlH~kgI  197 (463)
T KOG0607|consen  148 DTRFYLVFEKMRGGPLLSHIQKRKHFNEREASRVVKDIASALDFLHTKGI  197 (463)
T ss_pred             cceEEEEEecccCchHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhcCc
Confidence            9999999999999999999987766533         8999999999987

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.47  E-value=5.1e-14  Score=133.58  Aligned_cols=104  Identities=19%  Similarity=0.289  Sum_probs=86.8

Q ss_pred             cccccCCCeeEEEEEe----CCCcEEEEEEecccC---CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          277 NIIGQGGFGKVYKGVL----SDNTKVAVKRLQDYY---SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~----~~g~~vavK~l~~~~---~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      +.||+|+||.||++..    .+++.||||.+....   .......+.+|++++.+++||||+++++++..++..++||||
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~   81 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY   81 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence            5799999999999986    357899999986321   122345678999999999999999999999999999999999


Q ss_pred             ccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +++|+|.++++.....         .+++.||+|||+++|
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  121 (323)
T cd05584          82 LSGGELFMHLEREGIFMEDTACFYLSEISLALEHLHQQGI  121 (323)
T ss_pred             CCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999999998754432         358899999999875

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.47  E-value=3.4e-14  Score=132.26  Aligned_cols=111  Identities=28%  Similarity=0.368  Sum_probs=92.8

Q ss_pred             hcCcccccccccCCCeeEEEEEeC------CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCce
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLS------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSER  343 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~  343 (380)
                      .++|+..+.||+|+||.||++...      ++..+|+|.+.........++|.+|++++.+++||||+++++++..++..
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~   83 (288)
T cd05050           4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKPM   83 (288)
T ss_pred             hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCcc
Confidence            456888899999999999999863      46789999986543444467799999999999999999999999998899


Q ss_pred             eEEeecccCCChhhhccccc-------------------------------ccceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSH-------------------------------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~-------------------------------~~~~~~~aL~yLH~~~i  380 (380)
                      ++||||+++|+|.++++...                               ...+++.||+|||+.++
T Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~i  151 (288)
T cd05050          84 CLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERKF  151 (288)
T ss_pred             EEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            99999999999999997432                               12348889999998764

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.47  E-value=6.8e-14  Score=129.83  Aligned_cols=109  Identities=21%  Similarity=0.284  Sum_probs=89.0

Q ss_pred             cCcccccccccCCCeeEEEEEe-----CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeC--CCce
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-----SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT--SSER  343 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-----~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~--~~~~  343 (380)
                      .+|+..+.||+|+||.||++..     .++..||+|++... .....+.|.+|++++.+++||||+++.+++..  ....
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   82 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHS-TAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL   82 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccC-CHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCce
Confidence            3567788999999999999985     35789999998542 33346789999999999999999999998754  3467


Q ss_pred             eEEeecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      ++||||+++|+|.++++..+.          ..+++.||+|||+.||
T Consensus        83 ~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~~LH~~~i  129 (284)
T cd05081          83 RLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLGSKRY  129 (284)
T ss_pred             EEEEEecCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            899999999999999975432          1348999999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.47  E-value=5.4e-14  Score=129.11  Aligned_cols=108  Identities=22%  Similarity=0.368  Sum_probs=90.8

Q ss_pred             cccccccccCCCeeEEEEEeCCCcEEEEEEecccCC-----CchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          273 FSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYS-----PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~-----~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      |+..+.||+|+||.||+|...+++.+|||.+.....     ....+.+.+|++++.+++|+||+++.+++...+..++||
T Consensus         2 ~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   81 (265)
T cd06631           2 WTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIFM   81 (265)
T ss_pred             ccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEEE
Confidence            566788999999999999988899999999863221     112356889999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.+++......         .+++.||+|||+.+|
T Consensus        82 e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  123 (265)
T cd06631          82 EFVPGGSISSILNRFGPLPEPVFCKYTKQILDGVAYLHNNCV  123 (265)
T ss_pred             ecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999999999999754332         348899999999875

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=1.5e-15  Score=134.70  Aligned_cols=107  Identities=21%  Similarity=0.282  Sum_probs=87.8

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEec-ccCCCchHHHHHHHHHHHhcCcCCCCccceee-eeCCCc-eeEE
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQ-DYYSPGGEAAFQREVHLISVAIHKNLLQLIGY-CTTSSE-RILV  346 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~-~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~-~~~~~~-~~lV  346 (380)
                      .+|+..++||+|+||+|||+.. .+|..||.|.+. +..+....++...|+.+|++++|||||+++++ +.++.+ ..||
T Consensus        19 ~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlniv   98 (375)
T KOG0591|consen   19 ADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIV   98 (375)
T ss_pred             HHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHH
Confidence            3466678899999999999987 889999999997 33455567889999999999999999999984 444445 7899


Q ss_pred             eecccCCChhhhccccccc-------------ceeeeeecceee
Q 016905          347 YPFMQNLSVAYRLRVSHKI-------------YTKIISLSSLHC  377 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~-------------~~~~~aL~yLH~  377 (380)
                      |||+..|||.+.++..+..             .+++.||..||+
T Consensus        99 mE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~  142 (375)
T KOG0591|consen   99 MELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHS  142 (375)
T ss_pred             HHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999743222             338889999997

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.47  E-value=4.8e-14  Score=134.32  Aligned_cols=110  Identities=19%  Similarity=0.273  Sum_probs=91.2

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc--CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY--YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~--~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|+..++||+|+||.||++.. .+++.+|+|.+...  ......+.|.+|+.++..++|+||+++.+++...+..++||
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVM   80 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEE
Confidence            3677889999999999999998 45789999998531  12223456889999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccc-c---------cceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSH-K---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~-~---------~~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.++++... .         ..+++.||+|||+++|
T Consensus        81 ey~~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH~~~i  123 (332)
T cd05623          81 DYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQLHY  123 (332)
T ss_pred             eccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999999999997532 1         1348899999999875

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.47  E-value=4.5e-14  Score=134.16  Aligned_cols=105  Identities=18%  Similarity=0.178  Sum_probs=87.1

Q ss_pred             ccccccC--CCeeEEEEEe-CCCcEEEEEEecccCC-CchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeeccc
Q 016905          276 SNIIGQG--GFGKVYKGVL-SDNTKVAVKRLQDYYS-PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQ  351 (380)
Q Consensus       276 ~~~lg~G--~~g~Vy~~~~-~~g~~vavK~l~~~~~-~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~  351 (380)
                      .++||+|  +|++||++.. ++|+.||+|++..... ....+.+.+|+++++.++||||+++++++..++..++||||++
T Consensus         3 ~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~   82 (327)
T cd08227           3 LTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMA   82 (327)
T ss_pred             hhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEeccC
Confidence            5679999  7889999988 6789999999964322 2335567889999999999999999999999999999999999


Q ss_pred             CCChhhhccccc--cc---------ceeeeeecceeeecC
Q 016905          352 NLSVAYRLRVSH--KI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       352 ~GsL~~~L~~~~--~~---------~~~~~aL~yLH~~~i  380 (380)
                      +|+|.+++....  ..         .+++.||+|||+.+|
T Consensus        83 ~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~i  122 (327)
T cd08227          83 YGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHMGY  122 (327)
T ss_pred             CCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            999999986421  11         348899999999875

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.47  E-value=5.4e-14  Score=128.87  Aligned_cols=110  Identities=23%  Similarity=0.302  Sum_probs=93.6

Q ss_pred             HhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      ..++|+..+.||+|++|.||+|...+++.||+|.+...  ....++|.+|++++.+++||||+++++++...+..++|||
T Consensus         4 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   81 (261)
T cd05068           4 DRTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPG--TMDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTE   81 (261)
T ss_pred             chhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCC--cccHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeee
Confidence            34567888999999999999999877889999998642  2235779999999999999999999999999999999999


Q ss_pred             cccCCChhhhcccccc--c---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK--I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~--~---------~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.+++.....  .         .+++.||.|||+.+|
T Consensus        82 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  124 (261)
T cd05068          82 LMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNY  124 (261)
T ss_pred             cccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999999999975431  1         338899999999875

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.47  E-value=5.6e-14  Score=135.11  Aligned_cols=112  Identities=21%  Similarity=0.281  Sum_probs=95.0

Q ss_pred             HhcCcccccccccCCCeeEEEEEeC-CCcEEEEEEecccCCC--chHHHHHHHHHHHhcCc-CCCCccceeeeeCCCcee
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYYSP--GGEAAFQREVHLISVAI-HKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~--~~~~~f~~e~~~l~~l~-H~Niv~l~g~~~~~~~~~  344 (380)
                      ..+.|+..+.||+|.||.||+++.+ +|+.+|+|.+......  .....+.+|+.+|.++. |||||.+.+.+......+
T Consensus        33 ~~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~  112 (382)
T KOG0032|consen   33 IKEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVY  112 (382)
T ss_pred             ccccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEE
Confidence            3456777789999999999999984 5999999999643322  24578999999999998 999999999999999999


Q ss_pred             EEeecccCCChhhhccccc-c-------cceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSH-K-------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~-~-------~~~~~~aL~yLH~~~i  380 (380)
                      +|||++.+|.|.+.|.... .       ..+++.++.|||++||
T Consensus       113 lvmEL~~GGeLfd~i~~~~~sE~da~~~~~~il~av~~lH~~gv  156 (382)
T KOG0032|consen  113 LVMELCEGGELFDRIVKKHYSERDAAGIIRQILEAVKYLHSLGV  156 (382)
T ss_pred             EEEEecCCchHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9999999999999997651 1       1349999999999886

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.47  E-value=7.8e-14  Score=131.34  Aligned_cols=109  Identities=21%  Similarity=0.336  Sum_probs=90.8

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      ++|...+.||+|+||.||+|.. .+++.||+|++...........+.+|++++.+++||||+++++++..++..++||||
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   85 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEY   85 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeC
Confidence            4577788999999999999998 468899999996433333455688999999999999999999999999999999999


Q ss_pred             ccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      +++ +|.+++......          .+++.||+|||+.+|
T Consensus        86 ~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~i  125 (309)
T cd07872          86 LDK-DLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRRKV  125 (309)
T ss_pred             CCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            985 888888654321          358899999999875

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.46  E-value=7.6e-14  Score=128.18  Aligned_cols=110  Identities=18%  Similarity=0.288  Sum_probs=91.1

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecc--cCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQD--YYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~--~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|+..++||+|+||.||+|+. .+++.||||.+..  .........|.+|++++++++||||+++++++...+..++|+
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVL   81 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEE
Confidence            4678889999999999999998 5789999998753  122334567899999999999999999999999989999999


Q ss_pred             ecccCCChhhhcccc----cc---------cceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVS----HK---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~----~~---------~~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.+++...    ..         ..+++.||+|||+.+|
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i  127 (267)
T cd08228          82 ELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRV  127 (267)
T ss_pred             EecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCCe
Confidence            999999999888521    11         1248889999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.46  E-value=7.7e-14  Score=128.13  Aligned_cols=109  Identities=21%  Similarity=0.266  Sum_probs=92.0

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC-----CchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeE
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS-----PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-----~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~l  345 (380)
                      +|+..+.||+|++|.||++.. .+++.+|+|.+.....     ....+.+.+|+.++++++|+||+++++++...+..++
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   80 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNL   80 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEE
Confidence            467788999999999999987 6789999999863221     1134678999999999999999999999999999999


Q ss_pred             EeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||||+++|+|.+++......         .+++.||+|||+.++
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~ql~~al~~LH~~~i  124 (268)
T cd06630          81 FVEWMAGGSVSHLLSKYGAFKEAVIINYTEQLLRGLSYLHENQI  124 (268)
T ss_pred             EEeccCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            99999999999999754432         449999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.46  E-value=6.1e-14  Score=128.35  Aligned_cols=107  Identities=24%  Similarity=0.316  Sum_probs=90.2

Q ss_pred             CcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeeccc
Q 016905          272 NFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQ  351 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~  351 (380)
                      +|+..+.||+|+||.||+|...++..+|+|.+...  ....++|.+|+.++.+++||||+++++++...+..++||||++
T Consensus         5 ~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   82 (256)
T cd05113           5 DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG--SMSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMS   82 (256)
T ss_pred             HeEEeeEecCcccceEEEEEecCCCcEEEEEcCCC--cccHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcCC
Confidence            46667889999999999999877778999998632  2235679999999999999999999999998888999999999


Q ss_pred             CCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          352 NLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       352 ~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      +|+|.++++....          ..+++.||+|||+.+|
T Consensus        83 ~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  121 (256)
T cd05113          83 NGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESKQF  121 (256)
T ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999999875322          1348899999998875

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.46  E-value=8.4e-14  Score=128.89  Aligned_cols=108  Identities=19%  Similarity=0.238  Sum_probs=90.8

Q ss_pred             cccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeeccc
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQ  351 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~  351 (380)
                      |+..+.||+|+||.||+|.. .++..+|+|.+.........+.|.+|++++.+++||||+++++++..++..++||||++
T Consensus         6 ~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   85 (277)
T cd06641           6 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLG   85 (277)
T ss_pred             hhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeCC
Confidence            55678899999999999987 56889999998643333445779999999999999999999999999999999999999


Q ss_pred             CCChhhhccccccc--------ceeeeeecceeeecC
Q 016905          352 NLSVAYRLRVSHKI--------YTKIISLSSLHCFSL  380 (380)
Q Consensus       352 ~GsL~~~L~~~~~~--------~~~~~aL~yLH~~~i  380 (380)
                      +|+|.++++.....        .+++.+++|||+.+|
T Consensus        86 ~~~l~~~i~~~~~~~~~~~~~~~~l~~~l~~lh~~~i  122 (277)
T cd06641          86 GGSALDLLEPGPLDETQIATILREILKGLDYLHSEKK  122 (277)
T ss_pred             CCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHccCCe
Confidence            99999998753221        348889999999875

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.46  E-value=6.7e-14  Score=129.19  Aligned_cols=110  Identities=23%  Similarity=0.405  Sum_probs=91.3

Q ss_pred             cCcccccccccCCCeeEEEEEeC------CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCcee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLS------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~  344 (380)
                      ++|+....||+|+||.||+|...      +...+++|.+.........++|.+|++++.+++|+||+++++++...+..+
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   84 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHY   84 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcce
Confidence            46777889999999999999963      346799998854322224678999999999999999999999999988999


Q ss_pred             EEeecccCCChhhhccccc---------cc---------ceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSH---------KI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~---------~~---------~~~~~aL~yLH~~~i  380 (380)
                      +||||+++|+|.++++...         ..         .+++.||+|||+.+|
T Consensus        85 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i  138 (275)
T cd05046          85 MILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNARF  138 (275)
T ss_pred             EEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhcCc
Confidence            9999999999999997544         11         348899999999875

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.46  E-value=6.2e-14  Score=129.97  Aligned_cols=109  Identities=16%  Similarity=0.188  Sum_probs=90.6

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      +|+..++||+|+||.||+|+. .+++.+|+|.+.........++|.+|++++.+++||||+++++++..++..++||||+
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   81 (279)
T cd06619           2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEFM   81 (279)
T ss_pred             cchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEecC
Confidence            566778999999999999997 5788999999864333344577999999999999999999999999999999999999


Q ss_pred             cCCChhhhcccc-----cccceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVS-----HKIYTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~-----~~~~~~~~aL~yLH~~~i  380 (380)
                      ++|+|..+.+..     ....+++.||+|||+.+|
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  116 (279)
T cd06619          82 DGGSLDVYRKIPEHVLGRIAVAVVKGLTYLWSLKI  116 (279)
T ss_pred             CCCChHHhhcCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            999997664321     123459999999999875

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.46  E-value=7.1e-14  Score=130.31  Aligned_cols=110  Identities=22%  Similarity=0.278  Sum_probs=92.9

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|+..+.||+|+||.||++.. .+++.+|+|.+....  .....+.+.+|++++.+++||||+++++++..++..++||
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   80 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVM   80 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEE
Confidence            3677789999999999999998 568999999985321  2234567899999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.++++.....         .+++.||+|||+.+|
T Consensus        81 e~~~~~~L~~~~~~~~~l~~~~~~~~~~qil~~l~~lH~~~i  122 (290)
T cd05580          81 EYVPGGELFSHLRKSGRFPEPVARFYAAQVVLALEYLHSLDI  122 (290)
T ss_pred             ecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            999999999998765432         348899999999875

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.46  E-value=8.2e-14  Score=128.38  Aligned_cols=103  Identities=22%  Similarity=0.335  Sum_probs=83.9

Q ss_pred             ccccCCCeeEEEEEeCCC---cEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCCC
Q 016905          278 IIGQGGFGKVYKGVLSDN---TKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLS  354 (380)
Q Consensus       278 ~lg~G~~g~Vy~~~~~~g---~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~Gs  354 (380)
                      .||+|+||.||+|...++   ..+++|.+.........+.|.+|++++..++||||++++++|......++||||+++|+
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   81 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELGD   81 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCCc
Confidence            589999999999986333   35677777543333456789999999999999999999999999999999999999999


Q ss_pred             hhhhcccccc-------------cceeeeeecceeeecC
Q 016905          355 VAYRLRVSHK-------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       355 L~~~L~~~~~-------------~~~~~~aL~yLH~~~i  380 (380)
                      |.++++....             ..+++.||+|||+.+|
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i  120 (268)
T cd05086          82 LKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHNF  120 (268)
T ss_pred             HHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999975321             1248889999999874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.46  E-value=4.5e-14  Score=132.58  Aligned_cols=111  Identities=22%  Similarity=0.349  Sum_probs=91.8

Q ss_pred             hcCcccccccccCCCeeEEEEEe--------CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCC
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL--------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTS  340 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~--------~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~  340 (380)
                      .++|+..+.||+|+||.||++..        .++..||+|.+.........+++.+|+.++..+ +||||+++++++...
T Consensus        14 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   93 (304)
T cd05101          14 RDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD   93 (304)
T ss_pred             HHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecC
Confidence            45677789999999999999974        134579999986443344567899999999999 899999999999999


Q ss_pred             CceeEEeecccCCChhhhcccccc-------------------------cceeeeeecceeeecC
Q 016905          341 SERILVYPFMQNLSVAYRLRVSHK-------------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       341 ~~~~lV~Ey~~~GsL~~~L~~~~~-------------------------~~~~~~aL~yLH~~~i  380 (380)
                      +..++||||+++|+|.++++..+.                         ..+++.||+|||+.||
T Consensus        94 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~gi  158 (304)
T cd05101          94 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQKC  158 (304)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHCCe
Confidence            999999999999999999976422                         1258999999999875

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.46  E-value=5.6e-14  Score=130.15  Aligned_cols=110  Identities=21%  Similarity=0.238  Sum_probs=93.2

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .++|+..+.||+|+||.||++.. .++..+|+|.+... .....+.|.+|++++.+++|||++++++++..++..++|||
T Consensus         4 ~~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (280)
T cd06611           4 NDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIE-SEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIE   82 (280)
T ss_pred             hhHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeC-CHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEee
Confidence            45677788999999999999998 46889999998532 33345779999999999999999999999999999999999


Q ss_pred             cccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.+++.....          ..+++.||+|||+.+|
T Consensus        83 ~~~~~~L~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~i  124 (280)
T cd06611          83 FCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHSHKV  124 (280)
T ss_pred             ccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            9999999999875332          1348899999999875

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.46  E-value=7.5e-14  Score=129.59  Aligned_cols=102  Identities=21%  Similarity=0.260  Sum_probs=83.7

Q ss_pred             cccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCCCh
Q 016905          279 IGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSV  355 (380)
Q Consensus       279 lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~GsL  355 (380)
                      ||+|+||+||++.. .+++.+|+|++....  .....+.+..|++++.+++||||+++.+++..++..++|||||++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L   80 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL   80 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence            69999999999998 568999999986321  122345678999999999999999999999999999999999999999


Q ss_pred             hhhccccc----c---------cceeeeeecceeeecC
Q 016905          356 AYRLRVSH----K---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       356 ~~~L~~~~----~---------~~~~~~aL~yLH~~~i  380 (380)
                      .++++...    .         ..+++.||+|||+.+|
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i  118 (280)
T cd05608          81 RYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRRI  118 (280)
T ss_pred             HHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            98874311    1         1348999999999875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.46  E-value=5.8e-14  Score=132.08  Aligned_cols=111  Identities=23%  Similarity=0.320  Sum_probs=91.4

Q ss_pred             hcCcccccccccCCCeeEEEEEeC--------CCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCC
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLS--------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTS  340 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~--------~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~  340 (380)
                      .++|...+.||+|+||.||++...        +...+|+|.+...........+.+|++++.++ +||||+++++++...
T Consensus        17 ~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~   96 (307)
T cd05098          17 RDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD   96 (307)
T ss_pred             hHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecC
Confidence            356788899999999999999752        23579999996443334456788999999999 799999999999999


Q ss_pred             CceeEEeecccCCChhhhcccccc-------------------------cceeeeeecceeeecC
Q 016905          341 SERILVYPFMQNLSVAYRLRVSHK-------------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       341 ~~~~lV~Ey~~~GsL~~~L~~~~~-------------------------~~~~~~aL~yLH~~~i  380 (380)
                      +..++||||+++|+|.++++.++.                         ..+++.||+|||+++|
T Consensus        97 ~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi  161 (307)
T cd05098          97 GPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKKC  161 (307)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            999999999999999999975421                         2347889999999875

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.46  E-value=3.9e-14  Score=132.12  Aligned_cols=114  Identities=24%  Similarity=0.366  Sum_probs=93.3

Q ss_pred             HHHhcCcccccccccCCCeeEEEEEeC------CCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeC
Q 016905          267 QLATDNFSESNIIGQGGFGKVYKGVLS------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTT  339 (380)
Q Consensus       267 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~  339 (380)
                      ....++|+..+.||+|+||.||++...      ....+|+|.+..........++.+|++++.++ +|+||+++++++..
T Consensus         8 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~   87 (293)
T cd05053           8 ELPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQ   87 (293)
T ss_pred             ccCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcC
Confidence            334566788899999999999999873      23689999986543344456789999999999 89999999999999


Q ss_pred             CCceeEEeecccCCChhhhccccc-------------------------ccceeeeeecceeeecC
Q 016905          340 SSERILVYPFMQNLSVAYRLRVSH-------------------------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       340 ~~~~~lV~Ey~~~GsL~~~L~~~~-------------------------~~~~~~~aL~yLH~~~i  380 (380)
                      ++..+++|||+++|+|.++++.+.                         ...+++.||+|||+.+|
T Consensus        88 ~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~i  153 (293)
T cd05053          88 EGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKKC  153 (293)
T ss_pred             CCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            999999999999999999996532                         12348899999999875

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.46  E-value=8.6e-14  Score=127.39  Aligned_cols=110  Identities=24%  Similarity=0.335  Sum_probs=93.9

Q ss_pred             HhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      ..++|...++||+|+||.||++..+++..+|||.+...  ....+++.+|+.++.+++|+||+++++++......++|||
T Consensus         4 ~~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   81 (261)
T cd05034           4 PRESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPG--TMSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTE   81 (261)
T ss_pred             chhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCC--ccCHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEe
Confidence            45678888999999999999999877889999998642  2345789999999999999999999999998889999999


Q ss_pred             cccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.++++....           ..+++.|++|||+.+|
T Consensus        82 ~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~~i  124 (261)
T cd05034          82 YMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRNY  124 (261)
T ss_pred             ccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9999999999976431           1348899999999875

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.45  E-value=6.5e-14  Score=131.58  Aligned_cols=112  Identities=24%  Similarity=0.339  Sum_probs=92.5

Q ss_pred             HhcCcccccccccCCCeeEEEEEe------CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCC
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSS  341 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~  341 (380)
                      ..++|...+.||+|+||.||++..      .++..+|||++.........+.|.+|++++.++ +||||+++++++...+
T Consensus        33 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~  112 (302)
T cd05055          33 PRNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGG  112 (302)
T ss_pred             cHHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCC
Confidence            345688889999999999999974      235589999986433333456799999999999 7999999999999999


Q ss_pred             ceeEEeecccCCChhhhccccccc-----------ceeeeeecceeeecC
Q 016905          342 ERILVYPFMQNLSVAYRLRVSHKI-----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       342 ~~~lV~Ey~~~GsL~~~L~~~~~~-----------~~~~~aL~yLH~~~i  380 (380)
                      ..++||||+++|+|.++++.....           .+++.||+|||+.+|
T Consensus       113 ~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~i  162 (302)
T cd05055         113 PILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNC  162 (302)
T ss_pred             ceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            999999999999999999754321           348899999999875

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.45  E-value=5.4e-14  Score=130.40  Aligned_cols=110  Identities=25%  Similarity=0.421  Sum_probs=90.9

Q ss_pred             cCcccccccccCCCeeEEEEEeCC------CcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCcee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLSD------NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~~------g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~  344 (380)
                      ++|+..+.||+|+||.||+|....      ...||+|.+..........+|.+|++++.+++||||+++++++...+..+
T Consensus         5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T cd05048           5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTC   84 (283)
T ss_pred             HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCceE
Confidence            356677889999999999998732      25799999864444444677999999999999999999999999888999


Q ss_pred             EEeecccCCChhhhccccc-------------------------ccceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSH-------------------------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~-------------------------~~~~~~~aL~yLH~~~i  380 (380)
                      ++|||+++|+|.+++....                         ...+++.||+|||+.+|
T Consensus        85 ~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~i  145 (283)
T cd05048          85 MLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHHF  145 (283)
T ss_pred             EEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999999999999997532                         12348999999998875

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.45  E-value=9.6e-14  Score=132.09  Aligned_cols=104  Identities=21%  Similarity=0.268  Sum_probs=86.1

Q ss_pred             cccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeEEeecccC
Q 016905          277 NIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERILVYPFMQN  352 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~lV~Ey~~~  352 (380)
                      ++||+|+||.||++.. .+++.+|+|.+....  .....+.+.+|+.++.++ +||||+++++++..++..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~   80 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG   80 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence            4689999999999998 568899999996421  223456678899988876 899999999999999999999999999


Q ss_pred             CChhhhccccccc---------ceeeeeecceeeecC
Q 016905          353 LSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       353 GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+|.+++......         .+++.||+|||+++|
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~i  117 (329)
T cd05618          81 GDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGI  117 (329)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999888654332         348899999999875

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.45  E-value=8.4e-14  Score=127.54  Aligned_cols=108  Identities=22%  Similarity=0.308  Sum_probs=90.2

Q ss_pred             hcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      .+.|+..++||+|+||.||+|..++++.+|+|.+...  ....++|.+|++++.+++|+|++++.+++. .+..+++|||
T Consensus         5 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~   81 (260)
T cd05067           5 RETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQG--SMSPEAFLAEANLMKQLQHPRLVRLYAVVT-QEPIYIITEY   81 (260)
T ss_pred             hHHceeeeeeccCccceEEeeecCCCceEEEEEecCC--CCcHHHHHHHHHHHHhcCCcCeeeEEEEEc-cCCcEEEEEc
Confidence            4567778999999999999999988999999998642  224568999999999999999999999864 5678999999


Q ss_pred             ccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      +++|+|.++++....           ..+++.||+|||+.+|
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~i  123 (260)
T cd05067          82 MENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNY  123 (260)
T ss_pred             CCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCe
Confidence            999999999864321           1248899999999875

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.45  E-value=2.3e-14  Score=137.42  Aligned_cols=112  Identities=16%  Similarity=0.203  Sum_probs=96.3

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCcee
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~  344 (380)
                      -.++|..+++||+|+|++||+|+. .+++.+|||++.+..  .+...+....|-+.|.++ .||.|++|+--+.++...|
T Consensus        71 ~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~sLY  150 (604)
T KOG0592|consen   71 TPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEESLY  150 (604)
T ss_pred             ChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccceE
Confidence            456788899999999999999998 679999999996332  233456677899999999 8999999999999999999


Q ss_pred             EEeecccCCChhhhcccccccc---------eeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHKIY---------TKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~~~---------~~~~aL~yLH~~~i  380 (380)
                      +|+||++||+|.++|++.+...         +++.||+|||++||
T Consensus       151 FvLe~A~nGdll~~i~K~Gsfde~caR~YAAeIldAleylH~~GI  195 (604)
T KOG0592|consen  151 FVLEYAPNGDLLDLIKKYGSFDETCARFYAAEILDALEYLHSNGI  195 (604)
T ss_pred             EEEEecCCCcHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCc
Confidence            9999999999999999765553         49999999999997

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.45  E-value=9.4e-14  Score=126.98  Aligned_cols=107  Identities=24%  Similarity=0.317  Sum_probs=90.3

Q ss_pred             CcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeeccc
Q 016905          272 NFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQ  351 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~  351 (380)
                      +|+..+.||+|+||.||++...++..+|+|.+...  ......|.+|++++.+++||||+++++++...+..++||||++
T Consensus         5 ~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~   82 (256)
T cd05059           5 ELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREG--AMSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMA   82 (256)
T ss_pred             HcchhhhhccCCCceEEEeEecCCccEEEEEeccC--CCCHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecCC
Confidence            46667889999999999999877778999998532  2235678999999999999999999999999999999999999


Q ss_pred             CCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          352 NLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       352 ~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      +|+|.++++....          ..+++.|++|||+.+|
T Consensus        83 ~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i  121 (256)
T cd05059          83 NGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESNGF  121 (256)
T ss_pred             CCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            9999999975322          1348899999999875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.45  E-value=1.1e-13  Score=131.44  Aligned_cols=104  Identities=19%  Similarity=0.183  Sum_probs=86.6

Q ss_pred             cccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCC
Q 016905          277 NIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNL  353 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~G  353 (380)
                      +.||+|+||.||++.. .++..||+|.+....  .......+..|++++..++||||+++.+++...+..++||||+++|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence            3689999999999987 578999999996321  2234567789999999999999999999999999999999999999


Q ss_pred             Chhhhccccccc---------ceeeeeecceee-ecC
Q 016905          354 SVAYRLRVSHKI---------YTKIISLSSLHC-FSL  380 (380)
Q Consensus       354 sL~~~L~~~~~~---------~~~~~aL~yLH~-~~i  380 (380)
                      +|.+++......         .+++.||+|||+ .+|
T Consensus        81 ~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~~~i  117 (325)
T cd05594          81 ELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNV  117 (325)
T ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCE
Confidence            999988754432         348999999997 554

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.45  E-value=1e-13  Score=131.33  Aligned_cols=104  Identities=21%  Similarity=0.312  Sum_probs=86.0

Q ss_pred             cccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeEEeecccC
Q 016905          277 NIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERILVYPFMQN  352 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~lV~Ey~~~  352 (380)
                      ++||+|+||.||+|+. .+++.||+|++....  .....+.+..|.+++..+ +||||+++++++..++..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence            3689999999999998 458899999986321  223456678899998866 799999999999999999999999999


Q ss_pred             CChhhhccccccc---------ceeeeeecceeeecC
Q 016905          353 LSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       353 GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+|.+++......         .+++.||+|||+++|
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i  117 (321)
T cd05591          81 GDLMFQIQRSRKFDEPRSRFYAAEVTLALMFLHRHGV  117 (321)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999988654332         348999999999875

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.45  E-value=6.6e-14  Score=130.95  Aligned_cols=111  Identities=20%  Similarity=0.301  Sum_probs=91.5

Q ss_pred             hcCcccccccccCCCeeEEEEEeC-----------------CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCcc
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLS-----------------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQ  332 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~-----------------~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~  332 (380)
                      .++|+..+.||+|+||.||++...                 +...+|+|.+.........++|.+|++++.+++|+||++
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~   83 (296)
T cd05095           4 RKRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIR   83 (296)
T ss_pred             hhhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcce
Confidence            346788899999999999998531                 244799999865434445678999999999999999999


Q ss_pred             ceeeeeCCCceeEEeecccCCChhhhcccccc--------------------cceeeeeecceeeecC
Q 016905          333 LIGYCTTSSERILVYPFMQNLSVAYRLRVSHK--------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       333 l~g~~~~~~~~~lV~Ey~~~GsL~~~L~~~~~--------------------~~~~~~aL~yLH~~~i  380 (380)
                      +++++...+..++||||+++|+|.++++....                    ..+++.||+|||+++|
T Consensus        84 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i  151 (296)
T cd05095          84 LLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLNF  151 (296)
T ss_pred             EEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            99999999999999999999999999875321                    1348899999999875

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.45  E-value=9.5e-14  Score=131.76  Aligned_cols=108  Identities=18%  Similarity=0.225  Sum_probs=86.2

Q ss_pred             cccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHH---hcCcCCCCccceeeeeCCCceeEE
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLI---SVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l---~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      |+..+.||+|+||.||++.. .+++.||||++....  .....+.+.+|++++   .+++||||+++++++...+..++|
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv   80 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFV   80 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEE
Confidence            45578899999999999998 568999999996321  222345566776554   577899999999999999999999


Q ss_pred             eecccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|..+++....        ..+++.||+|||+++|
T Consensus        81 ~E~~~~~~L~~~~~~~~l~~~~~~~~~~qi~~al~~lH~~~i  122 (324)
T cd05589          81 MEYAAGGDLMMHIHTDVFSEPRAVFYAACVVLGLQYLHENKI  122 (324)
T ss_pred             EcCCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            999999999988865321        1348899999999875

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.45  E-value=1.2e-13  Score=126.59  Aligned_cols=110  Identities=21%  Similarity=0.308  Sum_probs=92.3

Q ss_pred             cCcccccccccCCCeeEEEEEeC-CCcEEEEEEecc--cCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQD--YYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~--~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|+..+.||+|+||.||+|... +|+.+|+|.++.  .......+.+.+|++++.+++|+|++++++++...+..++||
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~   81 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVL   81 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence            56888899999999999999984 799999998863  222334678999999999999999999999999999999999


Q ss_pred             ecccCCChhhhcccccc-------------cceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHK-------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~-------------~~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.+++.....             ..+++.||+|||+.+|
T Consensus        82 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i  127 (267)
T cd08224          82 ELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKRI  127 (267)
T ss_pred             ecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            99999999998864211             1238899999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.45  E-value=6.8e-14  Score=129.58  Aligned_cols=112  Identities=23%  Similarity=0.370  Sum_probs=92.7

Q ss_pred             HhcCcccccccccCCCeeEEEEEeCC-----CcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeC-CCc
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVLSD-----NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT-SSE  342 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~~~-----g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~-~~~  342 (380)
                      ..++|+..++||+|+||.||+|....     +..|++|++.........+.+.+|+.++.+++|+||+++++++.. +..
T Consensus         4 ~~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~   83 (280)
T cd05043           4 SRDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEP   83 (280)
T ss_pred             chhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence            34678888999999999999999854     688999998654444456778999999999999999999999876 467


Q ss_pred             eeEEeecccCCChhhhccccccc-----------------ceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHKI-----------------YTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~~-----------------~~~~~aL~yLH~~~i  380 (380)
                      .++++||+++|+|.+++......                 .+++.||+|||+.+|
T Consensus        84 ~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~i  138 (280)
T cd05043          84 PFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKRGV  138 (280)
T ss_pred             CEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            89999999999999998653211                 248999999999874

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.45  E-value=6.8e-14  Score=130.38  Aligned_cols=109  Identities=27%  Similarity=0.358  Sum_probs=89.1

Q ss_pred             CcccccccccCCCeeEEEEEeC------CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeE
Q 016905          272 NFSESNIIGQGGFGKVYKGVLS------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~l  345 (380)
                      +|+..+.||+|+||.||+|+..      ....+++|.+.........+.+.+|+.++.+++||||+++++++..++..++
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l   80 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLL   80 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEE
Confidence            3566789999999999999862      2357999988644333345779999999999999999999999999999999


Q ss_pred             EeecccCCChhhhcccccc---------------------------------cceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHK---------------------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~---------------------------------~~~~~~aL~yLH~~~i  380 (380)
                      |+||+++|+|.++++....                                 ..+++.||+|||+.+|
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~i  148 (290)
T cd05045          81 IVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMKL  148 (290)
T ss_pred             EEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999999999999864211                                 1248899999998875

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.45  E-value=2.4e-14  Score=141.11  Aligned_cols=107  Identities=22%  Similarity=0.303  Sum_probs=90.4

Q ss_pred             ccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCC------CceeEE
Q 016905          274 SESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS------SERILV  346 (380)
Q Consensus       274 ~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~------~~~~lV  346 (380)
                      ...+.||+|+||.||+|+. ++|+.||||.++........+...+|+++|++++|+|||++.+.-.+.      +...+|
T Consensus        16 ~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vlv   95 (732)
T KOG4250|consen   16 EMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVLV   95 (732)
T ss_pred             eehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceEE
Confidence            3457899999999999996 789999999998655556678889999999999999999999876554      357899


Q ss_pred             eecccCCChhhhccccccc------------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI------------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~------------~~~~~aL~yLH~~~i  380 (380)
                      ||||++|||+..|.+....            ..+..|+.|||..||
T Consensus        96 mEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn~I  141 (732)
T KOG4250|consen   96 MEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRENGI  141 (732)
T ss_pred             EeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHcCc
Confidence            9999999999999865443            227889999998876

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.45  E-value=9.2e-14  Score=131.69  Aligned_cols=104  Identities=24%  Similarity=0.298  Sum_probs=86.4

Q ss_pred             cccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeEEeecccC
Q 016905          277 NIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERILVYPFMQN  352 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~lV~Ey~~~  352 (380)
                      ++||+|+||.||++.. .+++.||||++....  .....+.+..|.+++... +||||+++++++...+..++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~   80 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG   80 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence            3689999999999998 568899999986321  223456778899998876 699999999999999999999999999


Q ss_pred             CChhhhccccccc---------ceeeeeecceeeecC
Q 016905          353 LSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       353 GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+|.++++..+..         .+++.||+|||+++|
T Consensus        81 g~L~~~i~~~~~l~~~~~~~~~~ql~~~L~~lH~~~i  117 (320)
T cd05590          81 GDLMFHIQKSRRFDEARARFYAAEITSALMFLHDKGI  117 (320)
T ss_pred             chHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999998765432         348999999999875

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.45  E-value=1.5e-13  Score=128.91  Aligned_cols=109  Identities=21%  Similarity=0.316  Sum_probs=90.8

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      +.|...+.||+|+||.||+|.. .+++.||+|.+...........+.+|+.++.+++||||+++++++..++..++||||
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e~   85 (301)
T cd07873           6 ETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY   85 (301)
T ss_pred             cceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEec
Confidence            4577788999999999999988 468899999986433333456788999999999999999999999999999999999


Q ss_pred             ccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      ++ ++|.+++......          .+++.||+|||+.+|
T Consensus        86 ~~-~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~i  125 (301)
T cd07873          86 LD-KDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRRKV  125 (301)
T ss_pred             cc-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            97 5999988654321          358999999999875

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.44  E-value=1.2e-13  Score=128.72  Aligned_cols=109  Identities=19%  Similarity=0.290  Sum_probs=90.7

Q ss_pred             cCcccccccccCCCeeEEEEEeC-CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      ++|+..+.||+|++|.||+|... +++.||+|.+...........+.+|++++.+++|+||+++++++...+..++||||
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFEY   84 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEec
Confidence            56778899999999999999984 68899999986433233345678899999999999999999999999999999999


Q ss_pred             ccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      ++ ++|.+++......          .+++.||.|||+++|
T Consensus        85 ~~-~~L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i  124 (291)
T cd07844          85 LD-TDLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQRRV  124 (291)
T ss_pred             CC-CCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            98 4999988654321          359999999999875

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.44  E-value=1.4e-13  Score=125.45  Aligned_cols=108  Identities=22%  Similarity=0.327  Sum_probs=90.9

Q ss_pred             cccccccccCCCeeEEEEEeC-CCcEEEEEEecccC----CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          273 FSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYY----SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~----~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      |+..+.||+|++|.||+|+.. ++..|++|.+....    .....+.+.+|++++.+++|+||+++.+++..++..+++|
T Consensus         2 ~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   81 (258)
T cd06632           2 WRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFL   81 (258)
T ss_pred             ccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEEE
Confidence            566788999999999999985 78999999985322    1224567999999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++++|.++++.....         .+++.|++|||+.+|
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  123 (258)
T cd06632          82 ELVPGGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLHDRNT  123 (258)
T ss_pred             EecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            999999999999765422         348899999998875

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.44  E-value=6.3e-14  Score=132.32  Aligned_cols=112  Identities=23%  Similarity=0.356  Sum_probs=91.5

Q ss_pred             HhcCcccccccccCCCeeEEEEEe--------CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeC
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL--------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTT  339 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~--------~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~  339 (380)
                      ..++|...+.||+|+||.||++..        .....+|+|.+...........+.+|++++.++ +||||+++++++..
T Consensus        10 ~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~   89 (314)
T cd05099          10 PRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQ   89 (314)
T ss_pred             cHHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEcc
Confidence            345677789999999999999974        124579999986443344466789999999999 69999999999999


Q ss_pred             CCceeEEeecccCCChhhhcccccc-------------------------cceeeeeecceeeecC
Q 016905          340 SSERILVYPFMQNLSVAYRLRVSHK-------------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       340 ~~~~~lV~Ey~~~GsL~~~L~~~~~-------------------------~~~~~~aL~yLH~~~i  380 (380)
                      .+..++||||+++|+|.++++....                         ..+++.||+|||+.||
T Consensus        90 ~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi  155 (314)
T cd05099          90 EGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRRC  155 (314)
T ss_pred             CCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            8899999999999999999975321                         1358999999999875

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.44  E-value=8e-14  Score=145.50  Aligned_cols=110  Identities=19%  Similarity=0.376  Sum_probs=92.2

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC--CchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS--PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      .+|+..++||+|+||.||+|.. .+++.||+|++.....  ....+.|.+|++++++++||||+++++++...+..++||
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVM   81 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTM   81 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEE
Confidence            4677889999999999999998 4689999999964322  223567999999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccc--------------------ccceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSH--------------------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~--------------------~~~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.++++...                    ...+++.||+|||+.+|
T Consensus        82 EY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~GI  134 (932)
T PRK13184         82 PYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKGV  134 (932)
T ss_pred             EcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            9999999999986321                    11357889999999886

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.44  E-value=1.2e-13  Score=131.05  Aligned_cols=104  Identities=24%  Similarity=0.286  Sum_probs=84.2

Q ss_pred             cccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHH-HHhcCcCCCCccceeeeeCCCceeEEeecccC
Q 016905          277 NIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVH-LISVAIHKNLLQLIGYCTTSSERILVYPFMQN  352 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~-~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~  352 (380)
                      ++||+|+||.||++.. .+|+.+|+|++....  .....+.+..|.. ++..++||||+++++++..++..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            3689999999999997 578999999986321  2223455666665 46779999999999999999999999999999


Q ss_pred             CChhhhccccccc---------ceeeeeecceeeecC
Q 016905          353 LSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       353 GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+|.+++......         .+++.||+|||++||
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~gi  117 (325)
T cd05604          81 GELFFHLQRERSFPEPRARFYAAEIASALGYLHSINI  117 (325)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999988754432         348999999999885

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.44  E-value=8.4e-14  Score=129.96  Aligned_cols=111  Identities=22%  Similarity=0.298  Sum_probs=92.4

Q ss_pred             hcCcccccccccCCCeeEEEEEeCC-----------------CcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCcc
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLSD-----------------NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQ  332 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~~-----------------g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~  332 (380)
                      ..+|+..+.||+|+||.||++...+                 +..||+|.+.........++|.+|++++.+++||||++
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~   83 (296)
T cd05051           4 RQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIAR   83 (296)
T ss_pred             hhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeE
Confidence            3467778999999999999998632                 24689999875444445678999999999999999999


Q ss_pred             ceeeeeCCCceeEEeecccCCChhhhccccc-----------c---------cceeeeeecceeeecC
Q 016905          333 LIGYCTTSSERILVYPFMQNLSVAYRLRVSH-----------K---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       333 l~g~~~~~~~~~lV~Ey~~~GsL~~~L~~~~-----------~---------~~~~~~aL~yLH~~~i  380 (380)
                      +++++..++..++|+||+++|+|.++++...           .         ..+++.||+|||+.+|
T Consensus        84 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~i  151 (296)
T cd05051          84 LLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNF  151 (296)
T ss_pred             EEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCc
Confidence            9999999899999999999999999987544           1         1348899999999875

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.44  E-value=2.5e-14  Score=133.99  Aligned_cols=108  Identities=20%  Similarity=0.292  Sum_probs=94.7

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      .|+..+.||+|+||.||||.. ..++.||+|.+.-.......++.++|+.+++.++++||.+++|.+..+...+++||||
T Consensus        14 ~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey~   93 (467)
T KOG0201|consen   14 LYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEYC   93 (467)
T ss_pred             ccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHHh
Confidence            355568899999999999998 6789999999975555666888999999999999999999999999999999999999


Q ss_pred             cCCChhhhccccccc---------ceeeeeecceeeec
Q 016905          351 QNLSVAYRLRVSHKI---------YTKIISLSSLHCFS  379 (380)
Q Consensus       351 ~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~  379 (380)
                      .+|++.+.|......         ++++.||.|||..+
T Consensus        94 ~gGsv~~lL~~~~~~~E~~i~~ilre~l~~l~ylH~~~  131 (467)
T KOG0201|consen   94 GGGSVLDLLKSGNILDEFEIAVILREVLKGLDYLHSEK  131 (467)
T ss_pred             cCcchhhhhccCCCCccceeeeehHHHHHHhhhhhhcc
Confidence            999999999865552         44889999999875

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.44  E-value=9.3e-14  Score=127.68  Aligned_cols=109  Identities=20%  Similarity=0.254  Sum_probs=91.5

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      ++|+..+.||+|+||.||+|.. .+++.+|+|.++.. .......+.+|+.++..++||||+++++++..++..++|+||
T Consensus         9 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~   87 (267)
T cd06645           9 EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLE-PGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEF   87 (267)
T ss_pred             HHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecC-chhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEec
Confidence            4566678899999999999987 56889999998533 223345688999999999999999999999999999999999


Q ss_pred             ccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +++|+|.++++.....         .+++.|++|||+.||
T Consensus        88 ~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  127 (267)
T cd06645          88 CGGGSLQDIYHVTGPLSESQIAYVSRETLQGLYYLHSKGK  127 (267)
T ss_pred             cCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999999998755432         338899999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.44  E-value=1.3e-13  Score=126.97  Aligned_cols=108  Identities=21%  Similarity=0.328  Sum_probs=89.0

Q ss_pred             cccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC--C-------chHHHHHHHHHHHhcCcCCCCccceeeeeCCCc
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS--P-------GGEAAFQREVHLISVAIHKNLLQLIGYCTTSSE  342 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~-------~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~  342 (380)
                      |...+.||+|+||.||+|.. .+++.+|+|.+.....  .       ...+.+.+|+.++.+++|||++++++++...+.
T Consensus         3 ~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   82 (272)
T cd06629           3 WVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEEY   82 (272)
T ss_pred             eeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCCc
Confidence            55678899999999999987 5689999998852111  0       113568899999999999999999999999999


Q ss_pred             eeEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      .++||||+++|+|.++++.....         .+++.||.|||+.++
T Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i  129 (272)
T cd06629          83 LSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLAYLHSKGI  129 (272)
T ss_pred             eEEEEecCCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhCCe
Confidence            99999999999999998765332         348899999999874

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.44  E-value=1.2e-13  Score=130.82  Aligned_cols=104  Identities=23%  Similarity=0.277  Sum_probs=83.4

Q ss_pred             cccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHH-HHhcCcCCCCccceeeeeCCCceeEEeecccC
Q 016905          277 NIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVH-LISVAIHKNLLQLIGYCTTSSERILVYPFMQN  352 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~-~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~  352 (380)
                      ++||+|+||.||+++. .+++.+|+|++....  .....+.+..|.. ++..++||||+++++++...+..++||||+++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG   80 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            3689999999999998 568899999985321  1223445556654 57889999999999999999999999999999


Q ss_pred             CChhhhccccccc---------ceeeeeecceeeecC
Q 016905          353 LSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       353 GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+|.+++......         .+++.||+|||+.+|
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i  117 (321)
T cd05603          81 GELFFHLQRERCFLEPRARFYAAEVASAIGYLHSLNI  117 (321)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999888654332         358999999999875

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.44  E-value=1.4e-13  Score=126.02  Aligned_cols=110  Identities=21%  Similarity=0.298  Sum_probs=92.2

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC----CchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeE
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS----PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~l  345 (380)
                      ++|+..+.||+|++|.||++.. .+++.+|+|.+.....    ....+.+.+|++++.+++||||+++++++..++..++
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   81 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI   81 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence            4688899999999999999997 5689999999853211    1124578899999999999999999999999999999


Q ss_pred             EeecccCCChhhhcccccc---------cceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHK---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~---------~~~~~~aL~yLH~~~i  380 (380)
                      ||||+++|+|.+++.....         ..+++.||+|||+.+|
T Consensus        82 v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i  125 (263)
T cd06625          82 FMEYMPGGSVKDQLKAYGALTETVTRKYTRQILEGVEYLHSNMI  125 (263)
T ss_pred             EEEECCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999999999999875433         2348899999998875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.44  E-value=1.4e-13  Score=125.61  Aligned_cols=107  Identities=27%  Similarity=0.348  Sum_probs=91.9

Q ss_pred             cCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      ++|+..+.||+|+||.||++.. .|+.||+|.+.....  ..+.+.+|+.++.+++|+||+++++++...+..++||||+
T Consensus         6 ~~~~~~~~ig~g~~g~v~~~~~-~~~~v~iK~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   82 (256)
T cd05039           6 KELKLGATIGKGEFGDVMLGDY-RGQKVAVKCLKDDST--AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYM   82 (256)
T ss_pred             hhccceeeeecCCCceEEEEEe-cCcEEEEEEeccchh--HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEec
Confidence            4677788999999999999997 588999999964322  4678999999999999999999999999888999999999


Q ss_pred             cCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      ++|+|.++++....           ..+++.||+|||+.+|
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i  123 (256)
T cd05039          83 AKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNF  123 (256)
T ss_pred             CCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999975541           1348899999999875

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.44  E-value=1.4e-13  Score=127.49  Aligned_cols=109  Identities=20%  Similarity=0.259  Sum_probs=91.5

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      .|+..+.||+|+||.||+|.. .++..||+|.+.........+.|.+|++++.+++||||+++++++...+..++||||+
T Consensus         5 ~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06640           5 LFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEYL   84 (277)
T ss_pred             hhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEecC
Confidence            455677899999999999998 4588999999864333445678999999999999999999999999999999999999


Q ss_pred             cCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      ++|+|.++++....        ..+++.|++|||+.++
T Consensus        85 ~~~~L~~~i~~~~l~~~~~~~~~~~l~~~l~~lh~~~i  122 (277)
T cd06640          85 GGGSALDLLRAGPFDEFQIATMLKEILKGLDYLHSEKK  122 (277)
T ss_pred             CCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999875321        1348889999998875

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.44  E-value=1.3e-13  Score=130.34  Aligned_cols=104  Identities=21%  Similarity=0.291  Sum_probs=84.0

Q ss_pred             cccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhc-CcCCCCccceeeeeCCCceeEEeecccC
Q 016905          277 NIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISV-AIHKNLLQLIGYCTTSSERILVYPFMQN  352 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~-l~H~Niv~l~g~~~~~~~~~lV~Ey~~~  352 (380)
                      ++||+|+||.||+|.. .+++.||+|.+....  .....+.+..|.+++.. .+||||+++++++..++..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g   80 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            3689999999999998 568899999996321  22334556677777765 4899999999999999999999999999


Q ss_pred             CChhhhccccccc---------ceeeeeecceeeecC
Q 016905          353 LSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       353 GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+|.++++.....         .+++.||+|||+++|
T Consensus        81 g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i  117 (316)
T cd05592          81 GDLMFHIQSSGRFDEARARFYAAEIICGLQFLHKKGI  117 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            9999998754332         458999999999875

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.44  E-value=5.7e-14  Score=137.48  Aligned_cols=108  Identities=19%  Similarity=0.244  Sum_probs=94.4

Q ss_pred             cccccccccCCCeeEEEEEe-CCCcEEEEEEeccc--CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY--YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~--~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      |+.++.||.|+-|.|-.|++ .+|+.+|||++...  .+........+|+.+|+-+.|||+++++.++.+..+.|+|.||
T Consensus        14 wkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvlEy   93 (786)
T KOG0588|consen   14 WKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVLEY   93 (786)
T ss_pred             eeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEEEe
Confidence            56678899999999999998 88999999999643  2223356678999999999999999999999999999999999


Q ss_pred             ccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +++|.|+++|..++..         ++++.|+.|||..+|
T Consensus        94 v~gGELFdylv~kG~l~e~eaa~ff~QIi~gv~yCH~~~i  133 (786)
T KOG0588|consen   94 VPGGELFDYLVRKGPLPEREAAHFFRQILDGVSYCHAFNI  133 (786)
T ss_pred             cCCchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhcc
Confidence            9999999999876654         459999999999886

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.44  E-value=1.8e-13  Score=124.85  Aligned_cols=109  Identities=13%  Similarity=0.220  Sum_probs=91.7

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      +|+..++||+|+||.||.+.. .++..+++|.+... .+....+++.+|++++++++|+||+++++++...+..+++|||
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~   80 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEY   80 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEe
Confidence            467789999999999998887 56889999998532 2344567899999999999999999999999999999999999


Q ss_pred             ccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      +++|+|.+++.....           ..+++.+++|||+.+|
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i  122 (256)
T cd08221          81 ANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAGI  122 (256)
T ss_pred             cCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999999999976421           1248889999998874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.44  E-value=1.5e-13  Score=130.09  Aligned_cols=104  Identities=24%  Similarity=0.348  Sum_probs=85.1

Q ss_pred             cccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeEEeecccC
Q 016905          277 NIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERILVYPFMQN  352 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~lV~Ey~~~  352 (380)
                      +.||+|+||.||+|.. .+++.||||++....  .....+.+..|.+++... +||||+++++++.+.+..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~   80 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            3689999999999998 458899999996421  123345677788888764 899999999999999999999999999


Q ss_pred             CChhhhccccccc---------ceeeeeecceeeecC
Q 016905          353 LSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       353 GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+|.+++......         .+++.||+|||+++|
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qi~~al~~LH~~~i  117 (316)
T cd05619          81 GDLMFHIQSCHKFDLPRATFYAAEIICGLQFLHSKGI  117 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999998754332         348999999999875

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.44  E-value=1.6e-14  Score=139.48  Aligned_cols=106  Identities=25%  Similarity=0.318  Sum_probs=88.2

Q ss_pred             cccccccccCCCeeEEEEEe-CCCcEEEEEEeccc--CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY--YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~--~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      |...+.||.|+||.||-|.. .+...||||++.-.  .+....+++..|+..|.+++|||.+.+.|+|..+...||||||
T Consensus        28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVMEY  107 (948)
T KOG0577|consen   28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVMEY  107 (948)
T ss_pred             HHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHHH
Confidence            55567899999999999998 67889999999733  3334567899999999999999999999999999999999999


Q ss_pred             ccCCChhhhcccccc-cce---------eeeeecceeeec
Q 016905          350 MQNLSVAYRLRVSHK-IYT---------KIISLSSLHCFS  379 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~-~~~---------~~~aL~yLH~~~  379 (380)
                      |- ||-.|+|...+. ..+         .+.||+|||+++
T Consensus       108 Cl-GSAsDlleVhkKplqEvEIAAi~~gaL~gLaYLHS~~  146 (948)
T KOG0577|consen  108 CL-GSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHN  146 (948)
T ss_pred             Hh-ccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhh
Confidence            95 588888864332 222         789999999975

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.43  E-value=9.4e-14  Score=128.87  Aligned_cols=110  Identities=17%  Similarity=0.322  Sum_probs=91.2

Q ss_pred             cCcccccccccCCCeeEEEEEeC-CCcEEEEEEecccCC-CchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYYS-PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~~-~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      ++|+..+.||+|+||.||+|... +++.+|+|++..... ....+.+.+|++++.+++||||+++++++..++..++|||
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFE   80 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEe
Confidence            35777899999999999999984 589999999864322 2235678899999999999999999999999999999999


Q ss_pred             cccCCChhhhcccccc---------cceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~---------~~~~~~aL~yLH~~~i  380 (380)
                      |+++++|.++.+....         ..+++.||+|||+.+|
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i  121 (286)
T cd07846          81 FVDHTVLDDLEKYPNGLDESRVRKYLFQILRGIEFCHSHNI  121 (286)
T ss_pred             cCCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            9999999887754322         2348999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.43  E-value=2e-13  Score=124.53  Aligned_cols=109  Identities=13%  Similarity=0.246  Sum_probs=91.5

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      +|+..+.||+|+||.||++.. .++..+|+|.+.........+.+.+|+.++.+++|+||+++.+++..++..++||||+
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYC   80 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeC
Confidence            366778999999999999998 4688999999864333345677889999999999999999999999999999999999


Q ss_pred             cCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      ++|+|.+++.....           ..+++.||.|||+.+|
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i  121 (255)
T cd08219          81 DGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRV  121 (255)
T ss_pred             CCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhCCc
Confidence            99999998864221           2348999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.43  E-value=1.4e-13  Score=126.44  Aligned_cols=108  Identities=25%  Similarity=0.376  Sum_probs=91.4

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      .+|+..+.||+|+||.||+|.. ++++.||+|.+...  ....++|.+|++++.+++||||+++++++..++..++||||
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (263)
T cd05052           6 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED--TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF   83 (263)
T ss_pred             HHeEEeeecCCcccceEEEEEEecCCceEEEEEecCC--chHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEe
Confidence            3567788999999999999998 45889999998532  33467899999999999999999999999999999999999


Q ss_pred             ccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      +++|+|.+++.....           ..+++.||+|||+.+|
T Consensus        84 ~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i  125 (263)
T cd05052          84 MTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNF  125 (263)
T ss_pred             CCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            999999999865322           1348899999998874

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.43  E-value=1.5e-13  Score=130.19  Aligned_cols=104  Identities=22%  Similarity=0.320  Sum_probs=86.2

Q ss_pred             cccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeEEeecccC
Q 016905          277 NIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERILVYPFMQN  352 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~lV~Ey~~~  352 (380)
                      ++||+|+||.||++.. .+++.||||++....  .....+.+..|.+++..+ +||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   80 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG   80 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            3689999999999998 458899999996321  223456678899999877 799999999999999999999999999


Q ss_pred             CChhhhccccccc---------ceeeeeecceeeecC
Q 016905          353 LSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       353 GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+|.+++......         .+++.||+|||+.+|
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~i  117 (318)
T cd05570          81 GDLMFHIQRSGRFDEPRARFYAAEIVLGLQFLHERGI  117 (318)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999988755332         348999999999875

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.43  E-value=1.5e-13  Score=130.28  Aligned_cols=104  Identities=23%  Similarity=0.286  Sum_probs=83.6

Q ss_pred             cccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHH-HHhcCcCCCCccceeeeeCCCceeEEeecccC
Q 016905          277 NIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVH-LISVAIHKNLLQLIGYCTTSSERILVYPFMQN  352 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~-~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~  352 (380)
                      ++||+|+||+||+|.. .+|+.||+|++....  .....+.+..|.. ++..++||||+++++++...+..++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            3689999999999998 578999999996321  1223345555554 56789999999999999999999999999999


Q ss_pred             CChhhhccccccc---------ceeeeeecceeeecC
Q 016905          353 LSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       353 GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+|.++++.....         .+++.||+|||+++|
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~gi  117 (323)
T cd05575          81 GELFFHLQRERSFPEPRARFYAAEIASALGYLHSLNI  117 (323)
T ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999998754332         348999999999875

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.43  E-value=1.4e-13  Score=130.58  Aligned_cols=109  Identities=20%  Similarity=0.235  Sum_probs=89.0

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCC-CCccceeeeeCCCceeEEe
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHK-NLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~-Niv~l~g~~~~~~~~~lV~  347 (380)
                      +|+..+.||+|+||.||+|.. .+++.||||++....  .....+.+..|.+++..++|+ +|+++.+++...+..++||
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVM   80 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEE
Confidence            467788999999999999998 457899999996321  233456788999999999765 5888889998888999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.+++......         .+++.||+|||+++|
T Consensus        81 E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i  122 (324)
T cd05587          81 EYVNGGDLMYHIQQVGKFKEPHAVFYAAEIAIGLFFLHSKGI  122 (324)
T ss_pred             cCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            999999999998754432         348999999999875

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.43  E-value=1.6e-13  Score=127.81  Aligned_cols=110  Identities=17%  Similarity=0.178  Sum_probs=89.8

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCC--CceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS--SERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~--~~~~lV~  347 (380)
                      ++|+..+.||+|++|.||++.. .+++.+|+|.+...........+.+|++++++++||||+++++++...  +..++||
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   80 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAM   80 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEE
Confidence            3677889999999999999998 568899999986443334567799999999999999999999998653  3579999


Q ss_pred             ecccCCChhhhccccc-------------ccceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSH-------------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~-------------~~~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.+++....             ...+++.||+|||+.++
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~i  126 (287)
T cd06621          81 EYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRKI  126 (287)
T ss_pred             EecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            9999999998875311             11348899999998875

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.43  E-value=1.4e-13  Score=131.04  Aligned_cols=107  Identities=18%  Similarity=0.424  Sum_probs=86.5

Q ss_pred             cccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCC-----CceeE
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS-----SERIL  345 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~-----~~~~l  345 (380)
                      |+..++||+|+||.||+|+. .++..||||++.... .......+.+|++++.+++||||+++++++...     ...++
T Consensus         2 y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~l   81 (338)
T cd07859           2 YKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYV   81 (338)
T ss_pred             eEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEEE
Confidence            66788999999999999997 568999999986322 223356789999999999999999999988643     24799


Q ss_pred             EeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |||||+ ++|.+++......         .+++.||+|||+.+|
T Consensus        82 v~e~~~-~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i  124 (338)
T cd07859          82 VFELME-SDLHQVIKANDDLTPEHHQFFLYQLLRALKYIHTANV  124 (338)
T ss_pred             EEecCC-CCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            999996 6899988754332         358999999999875

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.43  E-value=1.8e-13  Score=126.36  Aligned_cols=109  Identities=21%  Similarity=0.258  Sum_probs=92.6

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      +|+..+.||+|++|.||+|.. .+++.+|+|.+...........+.+|++++++++|+|++++.+++..+...++|+||+
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~   81 (274)
T cd06609           2 LFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEYC   81 (274)
T ss_pred             hhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEee
Confidence            466678899999999999998 4688999999864433445677899999999999999999999999999999999999


Q ss_pred             cCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      ++|+|.++++....        ..+++.|++|||+++|
T Consensus        82 ~~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~i  119 (274)
T cd06609          82 GGGSCLDLLKPGKLDETYIAFILREVLLGLEYLHEEGK  119 (274)
T ss_pred             CCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999986421        1348899999999875

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.43  E-value=1.1e-14  Score=130.23  Aligned_cols=104  Identities=18%  Similarity=0.277  Sum_probs=90.6

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      -|+...+||+|+||.|||+.+ +.|+.+|+|.+.-   ..+.++...|+.+|.+++.|.+|+++|.|......|+|||||
T Consensus        34 VFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV---~sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYC  110 (502)
T KOG0574|consen   34 VFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPV---DTDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYC  110 (502)
T ss_pred             HHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCc---cchHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhc
Confidence            355678899999999999998 6799999999843   335788999999999999999999999999999999999999


Q ss_pred             cCCChhhhccccccc----------ceeeeeecceeee
Q 016905          351 QNLSVAYRLRVSHKI----------YTKIISLSSLHCF  378 (380)
Q Consensus       351 ~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~  378 (380)
                      --||..+.++-++.-          +..+.||+|||.+
T Consensus       111 GAGSiSDI~R~R~K~L~E~EIs~iL~~TLKGL~YLH~~  148 (502)
T KOG0574|consen  111 GAGSISDIMRARRKPLSEQEISAVLRDTLKGLQYLHDL  148 (502)
T ss_pred             CCCcHHHHHHHhcCCccHHHHHHHHHHHHhHHHHHHHH
Confidence            999999999855332          2388999999976

>PLN03150 hypothetical protein; Provisional

Probab=99.43  E-value=3.4e-13  Score=138.36  Aligned_cols=89  Identities=31%  Similarity=0.539  Sum_probs=83.0

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCC-CCCCEEEC
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQL-SNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l-~~L~~L~l  155 (380)
                      +|+.|+|++|.|+|.+|+.++.+++|+.|+|++|+|+|.+|+.++++++|+.|+|++|+|+|.+|..++.+ .++..+++
T Consensus       443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~  522 (623)
T PLN03150        443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF  522 (623)
T ss_pred             CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence            78999999999999999999999999999999999999999999999999999999999999999998764 57789999


Q ss_pred             cCCcccccCc
Q 016905          156 SSNNLTGRIP  165 (380)
Q Consensus       156 s~N~l~g~~p  165 (380)
                      ++|...+.+|
T Consensus       523 ~~N~~lc~~p  532 (623)
T PLN03150        523 TDNAGLCGIP  532 (623)
T ss_pred             cCCccccCCC
Confidence            9998766555

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.43  E-value=1.8e-13  Score=125.41  Aligned_cols=101  Identities=21%  Similarity=0.304  Sum_probs=83.0

Q ss_pred             cccCCCeeEEEEEeC---CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCCCh
Q 016905          279 IGQGGFGKVYKGVLS---DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSV  355 (380)
Q Consensus       279 lg~G~~g~Vy~~~~~---~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~GsL  355 (380)
                      ||+|+||.||+|++.   ++..||+|.+.........+.|.+|++++.+++||||+++++++. .+..++||||+++|+|
T Consensus         3 ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~-~~~~~lv~e~~~~~~L   81 (257)
T cd05115           3 LGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCE-AEALMLVMEMASGGPL   81 (257)
T ss_pred             cCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEc-CCCeEEEEEeCCCCCH
Confidence            899999999999873   456799999865434444677999999999999999999999885 4578999999999999


Q ss_pred             hhhccccccc----------ceeeeeecceeeecC
Q 016905          356 AYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       356 ~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      .++++.....          .+++.||+|||+.+|
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  116 (257)
T cd05115          82 NKFLSGKKDEITVSNVVELMHQVSMGMKYLEGKNF  116 (257)
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCe
Confidence            9999753221          348899999999875

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.43  E-value=1e-13  Score=126.70  Aligned_cols=109  Identities=21%  Similarity=0.264  Sum_probs=92.4

Q ss_pred             CcccccccccCCCeeEEEEEeC-CCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          272 NFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      +|+..+.||+|+||.||++... ++..+|+|.+....  .....+.+.+|++++++++||||+++++++..++..++|+|
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVD   80 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEe
Confidence            4677889999999999999984 68999999996322  22346789999999999999999999999999999999999


Q ss_pred             cccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+++++|.+++......         .++++||.|||+.+|
T Consensus        81 ~~~~~~L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lh~~~i  121 (258)
T cd05578          81 LLLGGDLRYHLSQKVKFSEEQVKFWICEIVLALEYLHSKGI  121 (258)
T ss_pred             CCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            99999999999765332         349999999999874

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.43  E-value=5.4e-14  Score=134.29  Aligned_cols=110  Identities=16%  Similarity=0.287  Sum_probs=92.4

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEec-ccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCc-eeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQ-DYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSE-RILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~-~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~-~~lV~  347 (380)
                      ++|...+++|+|+||.++..+. .++..+++|.+. ...+...++...+|+.++++++|||||.+.+.+..++. .+|||
T Consensus         4 ~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Ivm   83 (426)
T KOG0589|consen    4 DNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIVM   83 (426)
T ss_pred             chhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEEE
Confidence            4577789999999999998877 467799999997 33344456678999999999999999999999998888 89999


Q ss_pred             ecccCCChhhhcccccc-c----------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHK-I----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~-~----------~~~~~aL~yLH~~~i  380 (380)
                      ||++||+|.+.|.+++. .          .+++.|++|||+.+|
T Consensus        84 ~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~~i  127 (426)
T KOG0589|consen   84 EYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHENRV  127 (426)
T ss_pred             eecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999986652 2          348999999998765

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.43  E-value=9.5e-14  Score=129.98  Aligned_cols=110  Identities=20%  Similarity=0.366  Sum_probs=89.9

Q ss_pred             cCcccccccccCCCeeEEEEEeC-CCc--EEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeEE
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLS-DNT--KVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~--~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      ++|+..++||+|+||.||+|... ++.  .+++|.+.........+.|.+|++++.++ +||||+++++++...+..++|
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv   81 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIA   81 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEE
Confidence            46777899999999999999984 343  57888886433334467799999999999 799999999999998899999


Q ss_pred             eecccCCChhhhcccccc-------------------------cceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHK-------------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~-------------------------~~~~~~aL~yLH~~~i  380 (380)
                      +||+++|+|.++++....                         ..+++.||+|||+.+|
T Consensus        82 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~i  140 (297)
T cd05089          82 IEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQF  140 (297)
T ss_pred             EEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            999999999999975321                         1237789999999875

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.43  E-value=1.9e-13  Score=127.28  Aligned_cols=108  Identities=20%  Similarity=0.275  Sum_probs=89.1

Q ss_pred             cccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      |+..+.||+|+||+||++.. .+++.+|+|.+....  .......+.+|++++.+++|+|++++.+++..++..++||||
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEe
Confidence            55668899999999999998 578999999985321  122345678899999999999999999999999999999999


Q ss_pred             ccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      +++|+|.++++....           ..+++.||+|||+++|
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~i  123 (285)
T cd05632          82 MNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRENT  123 (285)
T ss_pred             ccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            999999988864321           1348899999999875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.43  E-value=1.4e-13  Score=127.13  Aligned_cols=111  Identities=21%  Similarity=0.318  Sum_probs=92.1

Q ss_pred             hcCcccccccccCCCeeEEEEEeC------CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCce
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLS------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSER  343 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~  343 (380)
                      .++|+..+.||+|+||.||+|...      .+..||+|.+...........|.+|+.++..++||||+++++++...+..
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~   84 (277)
T cd05032           5 REKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPT   84 (277)
T ss_pred             hHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCc
Confidence            456777899999999999999873      23689999986443334466789999999999999999999999999999


Q ss_pred             eEEeecccCCChhhhcccccc-------------------cceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHK-------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~-------------------~~~~~~aL~yLH~~~i  380 (380)
                      ++||||+++|+|.++++....                   ..+++.||+|||+.+|
T Consensus        85 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  140 (277)
T cd05032          85 LVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKKF  140 (277)
T ss_pred             EEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999999999999999864321                   1348899999999875

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.43  E-value=1.9e-13  Score=126.51  Aligned_cols=109  Identities=25%  Similarity=0.379  Sum_probs=89.5

Q ss_pred             cCcccccccccCCCeeEEEEEeC-CCc----EEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeE
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLS-DNT----KVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~----~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~l  345 (380)
                      .+|+..+.||+|+||.||+|... +|.    .+|+|.+..........++.+|+.++.+++||||++++++|.. +..++
T Consensus         7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~   85 (279)
T cd05057           7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS-SQVQL   85 (279)
T ss_pred             HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-CceEE
Confidence            45667789999999999999973 333    6899988654334456789999999999999999999999987 78899


Q ss_pred             EeecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      ||||+++|+|.++++.....          .+++.||+|||+.+|
T Consensus        86 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i  130 (279)
T cd05057          86 ITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEEKRL  130 (279)
T ss_pred             EEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            99999999999999764322          348899999999774

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.43  E-value=1.2e-13  Score=128.67  Aligned_cols=109  Identities=26%  Similarity=0.418  Sum_probs=90.6

Q ss_pred             cCcccccccccCCCeeEEEEEe------CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCcee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~  344 (380)
                      ++|...+.||+|+||.||++..      .++..+|+|.+... .....+.|.+|++++.+++||||+++++++...+..+
T Consensus         5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   83 (288)
T cd05093           5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA-SDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLI   83 (288)
T ss_pred             HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCc-CHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccE
Confidence            4677789999999999999985      23457999988542 3334678999999999999999999999999999999


Q ss_pred             EEeecccCCChhhhcccccc----------------------cceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHK----------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~----------------------~~~~~~aL~yLH~~~i  380 (380)
                      +||||+++|+|.++++....                      ..+++.||+|||+.+|
T Consensus        84 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~~i  141 (288)
T cd05093          84 MVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQHF  141 (288)
T ss_pred             EEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            99999999999999874331                      1348899999999875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.43  E-value=9.1e-14  Score=129.06  Aligned_cols=118  Identities=20%  Similarity=0.299  Sum_probs=94.4

Q ss_pred             eCHHHHHHHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeee
Q 016905          261 FSCRELQLATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCT  338 (380)
Q Consensus       261 ~~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~  338 (380)
                      +.++.+..++++|+..+.||+|+||.||++.. .+++.+|+|.+...  ......+.+|+.++.++ +||||+++++++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~--~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~   85 (286)
T cd06638           8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPI--HDIDEEIEAEYNILKALSDHPNVVKFYGMYY   85 (286)
T ss_pred             EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccc--cchHHHHHHHHHHHHHHhcCCCeeeeeeeee
Confidence            44566677889999999999999999999998 56889999988532  22346788999999999 6999999999884


Q ss_pred             -----CCCceeEEeecccCCChhhhcccc----cc---------cceeeeeecceeeecC
Q 016905          339 -----TSSERILVYPFMQNLSVAYRLRVS----HK---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       339 -----~~~~~~lV~Ey~~~GsL~~~L~~~----~~---------~~~~~~aL~yLH~~~i  380 (380)
                           .++..++||||+++|+|.++++..    ..         ..+++.||.|||+.+|
T Consensus        86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  145 (286)
T cd06638          86 KKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNKT  145 (286)
T ss_pred             ecccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhCCc
Confidence                 234689999999999999987531    11         1347899999998764

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.42  E-value=6.6e-14  Score=128.49  Aligned_cols=109  Identities=23%  Similarity=0.374  Sum_probs=90.3

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC-CchHHHHHHHHHHHhcCcCCC-CccceeeeeCCC------
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS-PGGEAAFQREVHLISVAIHKN-LLQLIGYCTTSS------  341 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-~~~~~~f~~e~~~l~~l~H~N-iv~l~g~~~~~~------  341 (380)
                      ..|+..++||+|+||.||+|+. .+|+.||+|+++-... ++....-.+|+-++.+++|+| ||+|.+++...+      
T Consensus        11 ~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~   90 (323)
T KOG0594|consen   11 FDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIG   90 (323)
T ss_pred             HHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccc
Confidence            3455567799999999999998 6799999999974333 333455689999999999999 999999998876      


Q ss_pred             ceeEEeecccCCChhhhcccccc-------------cceeeeeecceeeecC
Q 016905          342 ERILVYPFMQNLSVAYRLRVSHK-------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       342 ~~~lV~Ey~~~GsL~~~L~~~~~-------------~~~~~~aL~yLH~~~i  380 (380)
                      ..++|+||++. +|.+++.....             ++|++.||+|||+++|
T Consensus        91 ~l~lvfe~~d~-DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~~I  141 (323)
T KOG0594|consen   91 KLYLVFEFLDR-DLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSHGI  141 (323)
T ss_pred             eEEEEEEeecc-cHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            67899999976 99999876441             3569999999999986

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.42  E-value=2e-13  Score=129.92  Aligned_cols=109  Identities=19%  Similarity=0.216  Sum_probs=90.0

Q ss_pred             CcccccccccCCCeeEEEEEe----CCCcEEEEEEecccC---CCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCce
Q 016905          272 NFSESNIIGQGGFGKVYKGVL----SDNTKVAVKRLQDYY---SPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSER  343 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~----~~g~~vavK~l~~~~---~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~  343 (380)
                      +|+..+.||+|+||.||++..    .+++.||+|++....   .....+.+..|+.++..+ +|+||+++++++..++..
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL   80 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence            467788999999999999876    368899999986321   122345688999999999 599999999999999999


Q ss_pred             eEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ++||||+++|+|.+++..+...         .+++.||+|||+++|
T Consensus        81 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  126 (332)
T cd05614          81 HLILDYVSGGEMFTHLYQRDNFSEDEVRFYSGEIILALEHLHKLGI  126 (332)
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            9999999999999998754432         358999999999875

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.42  E-value=2.2e-13  Score=126.21  Aligned_cols=108  Identities=22%  Similarity=0.364  Sum_probs=90.1

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      +|+..+.||+|++|.||+|+. .+|..||||++.........+.+.+|++++.+++||||+++++++...+..++||||+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYM   80 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecC
Confidence            477789999999999999998 4688999999964433334567889999999999999999999999999999999999


Q ss_pred             cCCChhhhcccccc------------cceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSHK------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~~------------~~~~~~aL~yLH~~~i  380 (380)
                      ++ +|.+++.....            ..+++.||+|||+++|
T Consensus        81 ~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  121 (284)
T cd07836          81 DK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENRV  121 (284)
T ss_pred             Cc-cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            85 89888764321            1348899999999875

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.42  E-value=1.9e-13  Score=128.47  Aligned_cols=110  Identities=15%  Similarity=0.265  Sum_probs=92.0

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC--CchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS--PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|+..+.||+|+||.||++.. .+++.|++|.+.....  ....+.+.+|++++..++||||+++++.+..++..++||
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVM   80 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEE
Confidence            3677889999999999999998 5578999999864321  223567889999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.+++......         .+++.|++|||+.+|
T Consensus        81 e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  122 (305)
T cd05609          81 EYVEGGDCATLLKNIGALPVDMARMYFAETVLALEYLHNYGI  122 (305)
T ss_pred             ecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            999999999999754432         237789999999875

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.42  E-value=1.7e-13  Score=130.10  Aligned_cols=109  Identities=19%  Similarity=0.220  Sum_probs=88.3

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCc-CCCCccceeeeeCCCceeEEe
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAI-HKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~-H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      +|+..++||+|+||.||++.. .+|+.||+|++....  .....+.+..|.+++..+. |++|+++.+++...+..++||
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVM   80 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEE
Confidence            366678999999999999997 568999999986321  2234566888999998885 577888999988888999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.+++......         .+++.||+|||+.+|
T Consensus        81 Ey~~~g~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~~i  122 (323)
T cd05615          81 EYVNGGDLMYHIQQVGKFKEPQAVFYAAEISVGLFFLHRRGI  122 (323)
T ss_pred             cCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            999999999998754332         348899999999875

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.42  E-value=1.2e-13  Score=126.77  Aligned_cols=110  Identities=20%  Similarity=0.304  Sum_probs=91.0

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc--CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY--YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~--~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|+..+.||+|+||.||++.. .++..+|||.+...  ......++|.+|++++..++||||+++++++..++..+++|
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL   81 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEE
Confidence            3567788999999999999997 67899999988532  12234568899999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccc----c---------cceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSH----K---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~----~---------~~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.++++...    .         ..+++.||+|||+.+|
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i  127 (267)
T cd08229          82 ELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRRV  127 (267)
T ss_pred             EecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999999999886311    1         1248899999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.42  E-value=2.1e-13  Score=126.72  Aligned_cols=109  Identities=22%  Similarity=0.288  Sum_probs=89.5

Q ss_pred             CcccccccccCCCeeEEEEEe-----CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCC--Ccee
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-----SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS--SERI  344 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-----~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~--~~~~  344 (380)
                      .|+..+.||+|+||.||++.+     .++..||+|.+.........+.|.+|++++++++|||++++.+++...  ...+
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   84 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIK   84 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceE
Confidence            456678899999999999985     357899999986443344467899999999999999999999998775  5688


Q ss_pred             EEeecccCCChhhhcccccc-c---------ceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHK-I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~-~---------~~~~~aL~yLH~~~i  380 (380)
                      +||||+++|+|.+++..... .         .+++.||+|||+.||
T Consensus        85 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL~~lH~~gi  130 (284)
T cd05079          85 LIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLGSRQY  130 (284)
T ss_pred             EEEEccCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            99999999999999865322 1         348899999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.42  E-value=2.4e-13  Score=127.30  Aligned_cols=110  Identities=16%  Similarity=0.237  Sum_probs=92.7

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      ..+|+..+.||+|+||.||++.. .+++.||+|.+... .....+.+.+|+.+++.++|+|++++++++..++..++|||
T Consensus        18 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e   96 (297)
T cd06656          18 KKKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQ-QQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVME   96 (297)
T ss_pred             hhhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecC-ccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeec
Confidence            35677788999999999999997 57999999998532 23345678999999999999999999999999999999999


Q ss_pred             cccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.+++++...        ..+++.||+|||+.+|
T Consensus        97 ~~~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~i  136 (297)
T cd06656          97 YLAGGSLTDVVTETCMDEGQIAAVCRECLQALDFLHSNQV  136 (297)
T ss_pred             ccCCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            9999999999865321        1348899999999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.42  E-value=1.7e-13  Score=126.78  Aligned_cols=109  Identities=20%  Similarity=0.282  Sum_probs=89.7

Q ss_pred             CcccccccccCCCeeEEEEEeC-----CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeC--CCcee
Q 016905          272 NFSESNIIGQGGFGKVYKGVLS-----DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT--SSERI  344 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~~-----~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~--~~~~~  344 (380)
                      .|+..+.||+|+||.||++++.     ++..+|||.+.........+.|.+|++++.+++||||+++++++..  +...+
T Consensus         5 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~~   84 (284)
T cd05038           5 HLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSLR   84 (284)
T ss_pred             hchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCceE
Confidence            4555688999999999999863     3679999999643322346789999999999999999999999877  55789


Q ss_pred             EEeecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      +||||+++|+|.++++....          ..+++.||+|||+.+|
T Consensus        85 lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i  130 (284)
T cd05038          85 LIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLGSQRY  130 (284)
T ss_pred             EEEecCCCCCHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            99999999999999976542          1348899999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.42  E-value=2.3e-13  Score=125.75  Aligned_cols=109  Identities=20%  Similarity=0.307  Sum_probs=91.5

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCc---CCCCccceeeeeCCCceeEEe
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI---HKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~---H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      .|+..+.||+|+||.||+|.. .++..+|+|.+.........+++.+|+.++++++   |||++++++++..++..++||
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~   81 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIM   81 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEE
Confidence            366678899999999999998 6789999999864434445677899999999987   999999999999888999999


Q ss_pred             ecccCCChhhhccccccc--------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI--------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~--------~~~~~aL~yLH~~~i  380 (380)
                      ||+++++|.++++.....        .+++.||.|||+.+|
T Consensus        82 e~~~~~~L~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~i  122 (277)
T cd06917          82 EYAEGGSVRTLMKAGPIAEKYISVIIREVLVALKYIHKVGV  122 (277)
T ss_pred             ecCCCCcHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999999999998654211        238889999999875

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.42  E-value=2.5e-13  Score=125.99  Aligned_cols=110  Identities=18%  Similarity=0.302  Sum_probs=90.9

Q ss_pred             cCcccccccccCCCeeEEEEEeC-CCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      ++|+....||+|+||.||+|+.. +++.||+|++.... .....+.+.+|++++.+++|+|++++++++..++..++|||
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e   80 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFE   80 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEe
Confidence            35777889999999999999984 68999999986332 22235678899999999999999999999999999999999


Q ss_pred             cccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+++++|..+++.....         .+++.+|+|||+.+|
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~ql~~~l~~LH~~~i  121 (286)
T cd07847          81 YCDHTVLNELEKNPRGVPEHLIKKIIWQTLQAVNFCHKHNC  121 (286)
T ss_pred             ccCccHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            99999988887543222         348899999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.42  E-value=7e-14  Score=116.65  Aligned_cols=108  Identities=22%  Similarity=0.351  Sum_probs=87.8

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEec-ccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQ-DYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~-~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      +|+..++||+|.||+||||+. ++++.||+|+++ +..+++-.....+|+.+++.++|+|||+++.+...++..-+|+||
T Consensus         3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~   82 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEF   82 (292)
T ss_pred             chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHH
Confidence            355578899999999999997 668899999997 333344456788999999999999999999999999999999999


Q ss_pred             ccCCChhhhcccc----------cccceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVS----------HKIYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~----------~~~~~~~~aL~yLH~~~i  380 (380)
                      |.. +|..+....          ..+.+++.||.+||++++
T Consensus        83 cdq-dlkkyfdslng~~d~~~~rsfmlqllrgl~fchshnv  122 (292)
T KOG0662|consen   83 CDQ-DLKKYFDSLNGDLDPEIVRSFMLQLLRGLGFCHSHNV  122 (292)
T ss_pred             hhH-HHHHHHHhcCCcCCHHHHHHHHHHHHhhhhhhhhhhh
Confidence            975 676665432          223568999999999864

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.42  E-value=2.2e-13  Score=124.86  Aligned_cols=110  Identities=24%  Similarity=0.330  Sum_probs=93.7

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      ++|+..+.||+|+||+||+|.. .++..+|+|++.........+.+.+|++.++.++|+|++++++.+..++..++|+||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~   80 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPY   80 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEec
Confidence            3677889999999999999997 568899999986433333567899999999999999999999999999999999999


Q ss_pred             ccCCChhhhcccccc------------cceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHK------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~------------~~~~~~aL~yLH~~~i  380 (380)
                      +++++|.++++....            ..+++.|++|||+.+|
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~~i  123 (267)
T cd06610          81 LSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNGQ  123 (267)
T ss_pred             cCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            999999999975322            1348899999999875

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.42  E-value=2.6e-13  Score=127.02  Aligned_cols=109  Identities=16%  Similarity=0.227  Sum_probs=91.7

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      ..|+..+.||+|+||.||+|+. .++..+|+|.+.... ....+.+.+|+.++..++|+|++++++++..++..++||||
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~-~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~   98 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQ-QPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY   98 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCC-cchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeecc
Confidence            4577778899999999999997 568899999986422 23457789999999999999999999999988999999999


Q ss_pred             ccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      +++|+|.++++....        ..+++.||+|||+++|
T Consensus        99 ~~~~~L~~~~~~~~~~~~~~~~i~~ql~~aL~~LH~~gi  137 (296)
T cd06654          99 LAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQV  137 (296)
T ss_pred             cCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            999999999865321        1348899999999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.42  E-value=2.6e-13  Score=128.33  Aligned_cols=112  Identities=20%  Similarity=0.221  Sum_probs=88.8

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC-------------CchHHHHHHHHHHHhcCcCCCCccce
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS-------------PGGEAAFQREVHLISVAIHKNLLQLI  334 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-------------~~~~~~f~~e~~~l~~l~H~Niv~l~  334 (380)
                      ..+.|+....||+|.||.|-+|.. .+++.||||++.....             ....+...+||.+|++++|||||+|+
T Consensus        95 ~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~Li  174 (576)
T KOG0585|consen   95 QLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKLI  174 (576)
T ss_pred             ehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEEE
Confidence            456788888999999999999998 6789999999963211             01235788999999999999999999


Q ss_pred             eeeeCC--CceeEEeecccCCChhhhcccc---------cccceeeeeecceeeecC
Q 016905          335 GYCTTS--SERILVYPFMQNLSVAYRLRVS---------HKIYTKIISLSSLHCFSL  380 (380)
Q Consensus       335 g~~~~~--~~~~lV~Ey~~~GsL~~~L~~~---------~~~~~~~~aL~yLH~~~i  380 (380)
                      .+..++  +..|||+|||..|.+...=...         ...+.++.||+|||.+||
T Consensus       175 EvLDDP~s~~~YlVley~s~G~v~w~p~d~~els~~~Ar~ylrDvv~GLEYLH~Qgi  231 (576)
T KOG0585|consen  175 EVLDDPESDKLYLVLEYCSKGEVKWCPPDKPELSEQQARKYLRDVVLGLEYLHYQGI  231 (576)
T ss_pred             EeecCcccCceEEEEEeccCCccccCCCCcccccHHHHHHHHHHHHHHHHHHHhcCe
Confidence            998764  5689999999999876443222         223559999999999886

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.42  E-value=2.2e-13  Score=126.81  Aligned_cols=108  Identities=19%  Similarity=0.267  Sum_probs=89.1

Q ss_pred             cccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC--CchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS--PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      |+..++||+|+||.||++.. .+++.+|||.+.....  ....+.+.+|+.++.+++|+|++++.+.+...+..++||||
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEe
Confidence            55678899999999999998 5688999999863221  22245678899999999999999999999999999999999


Q ss_pred             ccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      +++|+|.++++....           ..+++.||+|||+.+|
T Consensus        82 ~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i  123 (285)
T cd05630          82 MNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQERI  123 (285)
T ss_pred             cCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            999999999864322           1348899999999875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.42  E-value=2.4e-13  Score=125.05  Aligned_cols=108  Identities=28%  Similarity=0.403  Sum_probs=86.0

Q ss_pred             cccccccccCCCeeEEEEEeC-C---CcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCc-----
Q 016905          273 FSESNIIGQGGFGKVYKGVLS-D---NTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSE-----  342 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~~-~---g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~-----  342 (380)
                      |+..+.||+|+||.||+|... +   +..||+|++.... .....+.|.+|++.+.+++||||+++++++...+.     
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   80 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIP   80 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCc
Confidence            455788999999999999973 2   3689999986422 22345679999999999999999999999876554     


Q ss_pred             -eeEEeecccCCChhhhcccccc---------------cceeeeeecceeeecC
Q 016905          343 -RILVYPFMQNLSVAYRLRVSHK---------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       343 -~~lV~Ey~~~GsL~~~L~~~~~---------------~~~~~~aL~yLH~~~i  380 (380)
                       .++++||+++|+|.+++.....               ..+++.||+|||+.+|
T Consensus        81 ~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~i  134 (273)
T cd05035          81 KPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRNF  134 (273)
T ss_pred             ccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence             7899999999999999854321               1348899999999874

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.42  E-value=2.3e-13  Score=125.03  Aligned_cols=103  Identities=23%  Similarity=0.311  Sum_probs=84.1

Q ss_pred             cccccCCCeeEEEEEeCC-------------CcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCce
Q 016905          277 NIIGQGGFGKVYKGVLSD-------------NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSER  343 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~~~-------------g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~  343 (380)
                      +.||+|+||.||+|+..+             ...|++|.+... .......|..|+.++..++||||+++++++..+...
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~-~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~   79 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPS-HRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVEN   79 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChh-hhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCC
Confidence            358999999999998622             235899987532 233456789999999999999999999999999899


Q ss_pred             eEEeecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      ++||||+++|+|..+++.+..          ..+++.|++|||+.+|
T Consensus        80 ~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i  126 (262)
T cd05077          80 IMVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLEDKDL  126 (262)
T ss_pred             EEEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhhCCe
Confidence            999999999999998875322          1349999999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.42  E-value=2.3e-13  Score=131.70  Aligned_cols=108  Identities=21%  Similarity=0.329  Sum_probs=88.5

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCC-----cee
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS-----ERI  344 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~-----~~~  344 (380)
                      +|+..+.||+|+||.||++.. .+++.||||++.... .....+.+.+|++++..++||||+++++++...+     ..+
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~   80 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIY   80 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEE
Confidence            467788999999999999997 578999999986322 2234567889999999999999999999998766     789


Q ss_pred             EEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +|+||+. ++|.+++......         .+++.||+|||+.+|
T Consensus        81 lv~e~~~-~~l~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~i  124 (372)
T cd07853          81 VVTELMQ-SDLHKIIVSPQPLSSDHVKVFLYQILRGLKYLHSAGI  124 (372)
T ss_pred             EEeeccc-cCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999997 5888887644332         458999999999875

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.42  E-value=2.1e-13  Score=126.31  Aligned_cols=110  Identities=25%  Similarity=0.370  Sum_probs=90.2

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCc----EEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCcee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNT----KVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~----~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~  344 (380)
                      .++|+..++||+|+||.||+|.. +++.    .||+|.+.........+++.+|+.++..++||||+++++++.. ...+
T Consensus         6 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~   84 (279)
T cd05109           6 ETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLT-STVQ   84 (279)
T ss_pred             hhheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcC-CCcE
Confidence            34677789999999999999986 4554    4899998654444456789999999999999999999999975 4577


Q ss_pred             EEeecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      ++|||+++|+|.++++....          ..+++.||+|||+.+|
T Consensus        85 l~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i  130 (279)
T cd05109          85 LVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEEVRL  130 (279)
T ss_pred             EEEEcCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            99999999999999976432          2459999999999875

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.41  E-value=2e-13  Score=124.64  Aligned_cols=101  Identities=29%  Similarity=0.375  Sum_probs=83.1

Q ss_pred             cccccCCCeeEEEEEeCC-C----------cEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeE
Q 016905          277 NIIGQGGFGKVYKGVLSD-N----------TKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~~~-g----------~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~l  345 (380)
                      +.||+|+||.||+|...+ +          ..+++|.+.....  ....|.+|+.++++++||||++++|++.. +..++
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~l   77 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHR--DSLAFFETASLMSQLSHKHLVKLYGVCVR-DENIM   77 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchh--hHHHHHHHHHHHHcCCCcchhheeeEEec-CCcEE
Confidence            468999999999999843 3          2578887753222  26789999999999999999999999988 77899


Q ss_pred             EeecccCCChhhhccccc-c---------cceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSH-K---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~-~---------~~~~~~aL~yLH~~~i  380 (380)
                      ||||+++|+|.++++... .         ..+++.||+|||+.+|
T Consensus        78 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i  122 (259)
T cd05037          78 VEEYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHYLEDKKL  122 (259)
T ss_pred             EEEcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhCCe
Confidence            999999999999997644 2         1358999999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.41  E-value=3.7e-13  Score=123.07  Aligned_cols=110  Identities=21%  Similarity=0.231  Sum_probs=93.8

Q ss_pred             cCcccccccccCCCeeEEEEEeC-CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      ++|+..+.||+|++|.||+++.. +++.++||++.........+.|.+|++.+.+++|+|++++++++...+..++||||
T Consensus         1 ~~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06623           1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEY   80 (264)
T ss_pred             CcceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEe
Confidence            36777899999999999999985 58999999986433324567899999999999999999999999999999999999


Q ss_pred             ccCCChhhhccccccc---------ceeeeeecceee-ecC
Q 016905          350 MQNLSVAYRLRVSHKI---------YTKIISLSSLHC-FSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~-~~i  380 (380)
                      +++++|.+++......         .+++.|++|||+ .++
T Consensus        81 ~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lh~~~~~  121 (264)
T cd06623          81 MDGGSLADLLKKVGKIPEPVLAYIARQILKGLDYLHTKRHI  121 (264)
T ss_pred             cCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence            9999999999754332         348899999999 764

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.41  E-value=2.5e-13  Score=124.69  Aligned_cols=107  Identities=21%  Similarity=0.293  Sum_probs=88.3

Q ss_pred             cCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      .+|+..+.||+|+||.||+|...+...||+|++...  ....+.|.+|++++.+++||||+++++++. .+..++||||+
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~   82 (262)
T cd05071           6 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG--TMSPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEYM   82 (262)
T ss_pred             HHeeEeeecCCCCCCcEEEEEecCCceEEEEecccC--ccCHHHHHHHHHHHHhCCCCCcceEEEEEC-CCCcEEEEEcC
Confidence            457778899999999999999876678999998632  223567999999999999999999999874 45678999999


Q ss_pred             cCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      ++|+|.++++....           ..+++.||+|||+.+|
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i  123 (262)
T cd05071          83 SKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNY  123 (262)
T ss_pred             CCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            99999999975321           1348899999999875

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.41  E-value=3.6e-13  Score=124.86  Aligned_cols=108  Identities=23%  Similarity=0.364  Sum_probs=89.2

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      +|+..+.||+|++|.||+|+. .++..||+|++.... .....+.+.+|+.++.+++||||+++++++..++..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEF   80 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEec
Confidence            466778899999999999998 468999999986322 223356788999999999999999999999999999999999


Q ss_pred             ccCCChhhhcccccc------------cceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHK------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~------------~~~~~~aL~yLH~~~i  380 (380)
                      ++ |+|.++++....            ..+++.||+|||+.+|
T Consensus        81 ~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i  122 (285)
T cd07861          81 LS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRRV  122 (285)
T ss_pred             CC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            97 689888764221            2449999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.41  E-value=2.2e-13  Score=129.14  Aligned_cols=109  Identities=19%  Similarity=0.241  Sum_probs=88.3

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeEEe
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      +|+..+.||+|+||.||+|.. .+++.||+|.+....  .....+.+..|..++..+ +|++|+++.+++...+..++||
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVM   80 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEE
Confidence            467788999999999999998 457899999986422  122345577788888777 6899999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.+++......         .+++.||+|||+.+|
T Consensus        81 E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i  122 (323)
T cd05616          81 EYVNGGDLMYQIQQVGRFKEPHAVFYAAEIAIGLFFLHSKGI  122 (323)
T ss_pred             cCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            999999999998754332         348999999999875

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.41  E-value=1.8e-13  Score=125.99  Aligned_cols=110  Identities=22%  Similarity=0.337  Sum_probs=90.1

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCC------
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTS------  340 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~------  340 (380)
                      +++.|+..+.||+|+||.||+|.. .+++.+|+|++...  ......+.+|+.++.++ +||||+++.+++...      
T Consensus         4 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~--~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~   81 (272)
T cd06637           4 PAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVT--GDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMD   81 (272)
T ss_pred             hhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcC--CccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCC
Confidence            556677788999999999999998 56889999998532  23456788999999998 799999999998753      


Q ss_pred             CceeEEeecccCCChhhhcccccc--c---------ceeeeeecceeeecC
Q 016905          341 SERILVYPFMQNLSVAYRLRVSHK--I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       341 ~~~~lV~Ey~~~GsL~~~L~~~~~--~---------~~~~~aL~yLH~~~i  380 (380)
                      ...++||||+++|+|.+++.....  .         .+++.|++|||+++|
T Consensus        82 ~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~i  132 (272)
T cd06637          82 DQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKV  132 (272)
T ss_pred             cEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence            357899999999999999875321  1         248999999999875

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.41  E-value=2.5e-13  Score=125.84  Aligned_cols=102  Identities=19%  Similarity=0.249  Sum_probs=83.8

Q ss_pred             cccCCCeeEEEEEe-CCCcEEEEEEecccCC--CchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCCCh
Q 016905          279 IGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS--PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSV  355 (380)
Q Consensus       279 lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~GsL  355 (380)
                      ||+|+||.||++.. .+|+.+|+|++.....  ....+.+..|++++.+++||||+++.+++..+...++||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L   80 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL   80 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence            69999999999998 5689999999963211  22344567799999999999999999999999999999999999999


Q ss_pred             hhhcccccc-----------cceeeeeecceeeecC
Q 016905          356 AYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       356 ~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      .++++....           ..+++.||+|||+.+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i  116 (277)
T cd05607          81 KYHIYNVGERGLEMERVIHYSAQITCGILHLHSMDI  116 (277)
T ss_pred             HHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            988864322           1358899999999875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.41  E-value=2.9e-13  Score=126.13  Aligned_cols=111  Identities=21%  Similarity=0.315  Sum_probs=91.1

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++++|...+.||+|+||.||+|.. .++..+|+|++...........+.+|++++.+++|+||+++.+++..++..++||
T Consensus         3 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~   82 (291)
T cd07870           3 AATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVF   82 (291)
T ss_pred             ccceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEE
Confidence            456788899999999999999987 5688999999864433334457789999999999999999999999988999999


Q ss_pred             ecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      ||++ +++.+++.....          ..+++.||+|||+.+|
T Consensus        83 e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i  124 (291)
T cd07870          83 EYMH-TDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHGQHI  124 (291)
T ss_pred             eccc-CCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9996 678777653221          1358999999999875

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.41  E-value=2.6e-13  Score=128.78  Aligned_cols=104  Identities=24%  Similarity=0.276  Sum_probs=82.6

Q ss_pred             cccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHH-HHHhcCcCCCCccceeeeeCCCceeEEeecccC
Q 016905          277 NIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREV-HLISVAIHKNLLQLIGYCTTSSERILVYPFMQN  352 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~-~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~  352 (380)
                      +.||+|+||.||+++. .+++.+|+|++....  .......+..|. .++..++||||+++++++...+..++||||+++
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING   80 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence            3689999999999998 467899999986321  122233444554 456788999999999999999999999999999


Q ss_pred             CChhhhccccccc---------ceeeeeecceeeecC
Q 016905          353 LSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       353 GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+|.++++.....         .+++.||+|||++||
T Consensus        81 ~~L~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~gi  117 (325)
T cd05602          81 GELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNI  117 (325)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999998754432         458999999999885

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.41  E-value=5.4e-14  Score=135.36  Aligned_cols=98  Identities=24%  Similarity=0.380  Sum_probs=84.4

Q ss_pred             ccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCC
Q 016905          274 SESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNL  353 (380)
Q Consensus       274 ~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~G  353 (380)
                      .+.+-||.|+-|.||.|++ .++.||||++++.        -..+|.-|++++||||+.+.|+|.....++||||||+.|
T Consensus       127 sELeWlGSGaQGAVF~Grl-~netVAVKKV~el--------kETdIKHLRkLkH~NII~FkGVCtqsPcyCIiMEfCa~G  197 (904)
T KOG4721|consen  127 SELEWLGSGAQGAVFLGRL-HNETVAVKKVREL--------KETDIKHLRKLKHPNIITFKGVCTQSPCYCIIMEFCAQG  197 (904)
T ss_pred             hhhhhhccCcccceeeeec-cCceehhHHHhhh--------hhhhHHHHHhccCcceeeEeeeecCCceeEEeeeccccc
Confidence            3467799999999999999 6789999998532        135788899999999999999999999999999999999


Q ss_pred             Chhhhcccccccc---------eeeeeecceeeecC
Q 016905          354 SVAYRLRVSHKIY---------TKIISLSSLHCFSL  380 (380)
Q Consensus       354 sL~~~L~~~~~~~---------~~~~aL~yLH~~~i  380 (380)
                      -|++.|+..+...         +|+.|+.|||.+.|
T Consensus       198 qL~~VLka~~~itp~llv~Wsk~IA~GM~YLH~hKI  233 (904)
T KOG4721|consen  198 QLYEVLKAGRPITPSLLVDWSKGIAGGMNYLHLHKI  233 (904)
T ss_pred             cHHHHHhccCccCHHHHHHHHHHhhhhhHHHHHhhH
Confidence            9999998765542         39999999998754

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.41  E-value=1.1e-13  Score=128.69  Aligned_cols=106  Identities=16%  Similarity=0.227  Sum_probs=89.3

Q ss_pred             CcccccccccCCCeeEEEEEeC-CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          272 NFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      +|+..+.||+|+||.||++... ++..+|+|.+.........+.+.+|++++.+++||||+++++++...+..++||||+
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   81 (286)
T cd06622           2 EIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEYM   81 (286)
T ss_pred             hhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEeec
Confidence            5667889999999999999984 789999999864333334578999999999999999999999999999999999999


Q ss_pred             cCCChhhhccccc---cc---------ceeeeeecceee
Q 016905          351 QNLSVAYRLRVSH---KI---------YTKIISLSSLHC  377 (380)
Q Consensus       351 ~~GsL~~~L~~~~---~~---------~~~~~aL~yLH~  377 (380)
                      ++++|.++++...   ..         .+++.||.|||+
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~  120 (286)
T cd06622          82 DAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKE  120 (286)
T ss_pred             CCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999887531   11         338889999995

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.41  E-value=2.7e-13  Score=125.72  Aligned_cols=109  Identities=19%  Similarity=0.271  Sum_probs=85.9

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCc----EEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeE
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNT----KVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~----~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~l  345 (380)
                      ++|+..+.||+|+||.||+|.+ .++.    .+++|.+.........+++..|+..+++++||||++++|++.. ...++
T Consensus         7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~-~~~~~   85 (279)
T cd05111           7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICPG-ASLQL   85 (279)
T ss_pred             hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEECC-CccEE
Confidence            3566678999999999999997 4454    4788887543333345678889999999999999999999864 45778


Q ss_pred             EeecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      ++||+++|+|.++++....          ..+++.||+|||+.+|
T Consensus        86 i~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i  130 (279)
T cd05111          86 VTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEHRM  130 (279)
T ss_pred             EEEeCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            9999999999999975432          1348899999999874

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.41  E-value=3.9e-13  Score=123.04  Aligned_cols=108  Identities=21%  Similarity=0.326  Sum_probs=91.9

Q ss_pred             cccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC-CchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS-PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      |+..+.||+|+||.||+|.. .++..+++|.+..... ....+.+.+|++++.+++|+||+++++++...+..++|+||+
T Consensus         2 y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~~   81 (264)
T cd06626           2 WQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEYC   81 (264)
T ss_pred             ceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEecC
Confidence            56678999999999999997 4688999999863322 235778999999999999999999999999999999999999


Q ss_pred             cCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ++++|.++++.....         .+++.|++|||+.+|
T Consensus        82 ~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~i  120 (264)
T cd06626          82 SGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLHSHGI  120 (264)
T ss_pred             CCCcHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHCCc
Confidence            999999999764322         348999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.41  E-value=2.9e-13  Score=123.96  Aligned_cols=107  Identities=22%  Similarity=0.309  Sum_probs=89.0

Q ss_pred             cCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      ++|+..+.||+|+||.||++..+++..+|+|.+....  ...++|.+|+.++.+++|+|++++++++. .+..+++|||+
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~   82 (260)
T cd05070           6 ESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGT--MSPESFLEEAQIMKKLRHDKLVQLYAVVS-EEPIYIVTEYM   82 (260)
T ss_pred             HHhhhhheeccccCceEEEEEecCCceeEEEEecCCC--CCHHHHHHHHHHHHhcCCCceEEEEeEEC-CCCcEEEEEec
Confidence            4567788999999999999998888899999986422  23567999999999999999999999875 45688999999


Q ss_pred             cCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      ++|+|.++++....           ..+++.||+|||+.+|
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i  123 (260)
T cd05070          83 SKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNY  123 (260)
T ss_pred             CCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            99999999875321           1348899999999875

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.41  E-value=2.7e-13  Score=123.55  Aligned_cols=109  Identities=18%  Similarity=0.313  Sum_probs=91.0

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      +|+..+.||+|+||.||++.. .+|..+|+|.+... ......+.+.+|+++++.++|+||+++++++...+..++|+||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~   80 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEY   80 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEec
Confidence            466788999999999999998 45889999998632 1223456788999999999999999999999999999999999


Q ss_pred             ccCCChhhhccccccc-----------ceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHKI-----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~~-----------~~~~~aL~yLH~~~i  380 (380)
                      +++++|.+++......           .+++.||+|||+.+|
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i  122 (257)
T cd08225          81 CDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRKI  122 (257)
T ss_pred             CCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            9999999998754321           248899999998774

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.41  E-value=1.1e-13  Score=132.13  Aligned_cols=93  Identities=24%  Similarity=0.384  Sum_probs=75.9

Q ss_pred             HhcCcccccccccCCCeeEEEEEe------CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCC-
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTS-  340 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~-  340 (380)
                      +.++|+..++||+|+||.||+|..      .+++.||+|++.........+.+.+|++++.++ +|+||++++++|... 
T Consensus         5 ~~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~   84 (337)
T cd05054           5 PRDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPG   84 (337)
T ss_pred             CHHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCC
Confidence            345677889999999999999974      235789999986433333456788999999999 899999999988754 


Q ss_pred             CceeEEeecccCCChhhhccc
Q 016905          341 SERILVYPFMQNLSVAYRLRV  361 (380)
Q Consensus       341 ~~~~lV~Ey~~~GsL~~~L~~  361 (380)
                      ...+++|||+++|+|.++|+.
T Consensus        85 ~~~~~v~ey~~~~~L~~~i~~  105 (337)
T cd05054          85 GPLMVIVEYCKFGNLSNYLRS  105 (337)
T ss_pred             CCEEEEEecCCCCCHHHHHHh
Confidence            567899999999999999864

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.41  E-value=3e-13  Score=126.44  Aligned_cols=107  Identities=21%  Similarity=0.317  Sum_probs=89.6

Q ss_pred             cccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC----CchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS----PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      |+..+.||+|+||.||+|.. .+++.||||++.....    ......+..|++++.+++|+||+++++++...+..++||
T Consensus         2 y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   81 (298)
T cd07841           2 YEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLVF   81 (298)
T ss_pred             ceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEEE
Confidence            66678899999999999998 4689999999964322    123456788999999999999999999999988999999


Q ss_pred             ecccCCChhhhccccc-cc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSH-KI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~-~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+ +|+|.++++... ..         .++++||+|||+++|
T Consensus        82 e~~-~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i  123 (298)
T cd07841          82 EFM-ETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSNWI  123 (298)
T ss_pred             ccc-CCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            999 999999997654 21         348999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.41  E-value=1.3e-13  Score=131.30  Aligned_cols=110  Identities=21%  Similarity=0.318  Sum_probs=90.0

Q ss_pred             cCcccccccccCCCeeEEEEEeC--------CCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCC
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLS--------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSS  341 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~--------~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~  341 (380)
                      ..|+..+.||+|+||.||++...        .+..||+|.+.........+++.+|++++.++ +||||++++++|..++
T Consensus        12 ~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~   91 (334)
T cd05100          12 TRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG   91 (334)
T ss_pred             hHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCC
Confidence            45777889999999999999751        12378999886433344467899999999999 8999999999999999


Q ss_pred             ceeEEeecccCCChhhhcccccc-------------------------cceeeeeecceeeecC
Q 016905          342 ERILVYPFMQNLSVAYRLRVSHK-------------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       342 ~~~lV~Ey~~~GsL~~~L~~~~~-------------------------~~~~~~aL~yLH~~~i  380 (380)
                      ..+++|||+++|+|.+++.....                         ..+++.||+|||+.+|
T Consensus        92 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi  155 (334)
T cd05100          92 PLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQKC  155 (334)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            99999999999999999875321                         1258899999999875

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.41  E-value=2.4e-13  Score=129.18  Aligned_cols=104  Identities=22%  Similarity=0.281  Sum_probs=86.3

Q ss_pred             cccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeEEeecccC
Q 016905          277 NIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERILVYPFMQN  352 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~lV~Ey~~~  352 (380)
                      ++||+|+||.||++.. .+++.+|+|++....  .....+.+.+|+.++.++ +||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            3699999999999998 567899999996422  223456688999999888 699999999999999999999999999


Q ss_pred             CChhhhccccccc---------ceeeeeecceeeecC
Q 016905          353 LSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       353 GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+|.+++...+..         .+++.||+|||+++|
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~~~~qi~~al~~lH~~~i  117 (327)
T cd05617          81 GDLMFHMQRQRKLPEEHARFYAAEICIALNFLHERGI  117 (327)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999888654332         348999999999875

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.41  E-value=3.8e-13  Score=122.52  Aligned_cols=109  Identities=16%  Similarity=0.276  Sum_probs=91.7

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      +|+..+.||+|+||.||++.. .+++.+|+|.+... ......+.+.+|++++++++|||++++++++..++..++||||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEY   80 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEec
Confidence            467788999999999999988 56889999998632 2334467899999999999999999999999888899999999


Q ss_pred             ccCCChhhhcccccc--c---------ceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHK--I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~--~---------~~~~~aL~yLH~~~i  380 (380)
                      +++|+|.++++....  .         .+++.+++|||+.+|
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~i  122 (256)
T cd08220          81 APGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLI  122 (256)
T ss_pred             CCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            999999999975422  1         248899999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.40  E-value=3.2e-13  Score=123.53  Aligned_cols=102  Identities=22%  Similarity=0.356  Sum_probs=83.5

Q ss_pred             ccccCCCeeEEEEEe---CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCC
Q 016905          278 IIGQGGFGKVYKGVL---SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNL  353 (380)
Q Consensus       278 ~lg~G~~g~Vy~~~~---~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~G  353 (380)
                      .||+|+||.||+|.+   .++..+|+|++.... .....++|.+|+.++.+++||||++++|++. .+..++||||+++|
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e~~~~~   80 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICE-AESWMLVMELAELG   80 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCcEEEEecCCCC
Confidence            589999999999975   457899999986332 2234678999999999999999999999985 45678999999999


Q ss_pred             Chhhhccccccc---------ceeeeeecceeeecC
Q 016905          354 SVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       354 sL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +|.+++......         .+++.||+|||+++|
T Consensus        81 ~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~i  116 (257)
T cd05116          81 PLNKFLQKNKHVTEKNITELVHQVSMGMKYLEETNF  116 (257)
T ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            999999754332         348899999999875

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.40  E-value=2.1e-13  Score=125.81  Aligned_cols=104  Identities=24%  Similarity=0.401  Sum_probs=85.1

Q ss_pred             cccccCCCeeEEEEEeC-CCc--EEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeEEeecccC
Q 016905          277 NIIGQGGFGKVYKGVLS-DNT--KVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERILVYPFMQN  352 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~~-~g~--~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~lV~Ey~~~  352 (380)
                      ++||+|+||.||+|... ++.  .+++|.+.........+.|.+|++++.++ +||||+++++++...+..++||||+++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH   80 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCC
Confidence            46899999999999983 343  57888886433344567899999999999 899999999999999999999999999


Q ss_pred             CChhhhcccccc-------------------------cceeeeeecceeeecC
Q 016905          353 LSVAYRLRVSHK-------------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       353 GsL~~~L~~~~~-------------------------~~~~~~aL~yLH~~~i  380 (380)
                      |+|.++++..+.                         ..+++.|++|||+.+|
T Consensus        81 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~i  133 (270)
T cd05047          81 GNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQF  133 (270)
T ss_pred             CcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            999999975431                         1237889999998774

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.40  E-value=4e-13  Score=122.99  Aligned_cols=104  Identities=25%  Similarity=0.402  Sum_probs=83.7

Q ss_pred             cccccCCCeeEEEEEeC----CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeC-CCceeEEeeccc
Q 016905          277 NIIGQGGFGKVYKGVLS----DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT-SSERILVYPFMQ  351 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~~----~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~-~~~~~lV~Ey~~  351 (380)
                      +.||+|+||.||+|...    ++..+|+|++.........+.|.+|+.+++.++|||++++++++.. ++..++|+||++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~   80 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMK   80 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCC
Confidence            46899999999999862    2457999998543333446788999999999999999999998864 556789999999


Q ss_pred             CCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          352 NLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       352 ~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      +|+|.++++.....          .+++.||+|||+.+|
T Consensus        81 ~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  119 (262)
T cd05058          81 HGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLASKKF  119 (262)
T ss_pred             CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999998753221          258999999999875

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.40  E-value=2.9e-13  Score=128.06  Aligned_cols=104  Identities=20%  Similarity=0.279  Sum_probs=85.1

Q ss_pred             cccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeEEeecccC
Q 016905          277 NIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERILVYPFMQN  352 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~lV~Ey~~~  352 (380)
                      ++||+|+||.||++.. .+|+.||+|.+....  .....+.+..|.+++... +||||+++++++...+..++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~   80 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence            4689999999999998 568899999996421  122355677788888754 899999999999999999999999999


Q ss_pred             CChhhhccccccc---------ceeeeeecceeeecC
Q 016905          353 LSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       353 GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+|.+++......         .+++.||+|||+++|
T Consensus        81 g~L~~~i~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  117 (316)
T cd05620          81 GDLMFHIQDKGRFDLYRATFYAAEIVCGLQFLHSKGI  117 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999998754332         358999999999875

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.40  E-value=2.1e-13  Score=136.40  Aligned_cols=107  Identities=13%  Similarity=0.232  Sum_probs=87.9

Q ss_pred             cccccccccCCCeeEEEEEe-CC-CcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SD-NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~-g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      |...+.||+|+||.||+|.. .+ +..||+|.+.. ........+.+|+++++.++|||||++++++..++..++||||+
T Consensus        69 y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~-~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~~  147 (478)
T PTZ00267         69 YVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVML-NDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYG  147 (478)
T ss_pred             EEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEccc-CCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEECC
Confidence            77789999999999999987 33 67888887742 22334556788999999999999999999999999999999999


Q ss_pred             cCCChhhhccccc----c---------cceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSH----K---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~----~---------~~~~~~aL~yLH~~~i  380 (380)
                      ++|+|.++|+...    .         ..+++.||+|||+.+|
T Consensus       148 ~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~i  190 (478)
T PTZ00267        148 SGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKM  190 (478)
T ss_pred             CCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            9999998875321    1         1348899999999875

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.40  E-value=3.6e-13  Score=123.69  Aligned_cols=110  Identities=23%  Similarity=0.314  Sum_probs=88.9

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-C---CchHHHHHHHHHHHhcCcCCCCccceeeeeCC--Cce
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-S---PGGEAAFQREVHLISVAIHKNLLQLIGYCTTS--SER  343 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~---~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~--~~~  343 (380)
                      ++|+..+.||+|+||.||+|.. .++..||+|.+.... .   ....+.+.+|+.++.+++||||+++++++.+.  ...
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL   81 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence            4678889999999999999998 568999999885221 1   12346788999999999999999999988663  457


Q ss_pred             eEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +++|||+++|+|.+++......         .+++.||+|||+.+|
T Consensus        82 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i  127 (265)
T cd06652          82 SIFMEHMPGGSIKDQLKSYGALTENVTRKYTRQILEGVSYLHSNMI  127 (265)
T ss_pred             EEEEEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            7999999999999998654322         348899999998874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.40  E-value=3.8e-13  Score=122.38  Aligned_cols=104  Identities=30%  Similarity=0.443  Sum_probs=87.9

Q ss_pred             cccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCCChh
Q 016905          277 NIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVA  356 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~GsL~  356 (380)
                      ++||+|+||.||++...+++.||+|.+.........+.|.+|++++.+++|+||+++++++...+..++||||+++++|.
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~   80 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLL   80 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcHH
Confidence            46899999999999986699999999864333335678999999999999999999999999999999999999999999


Q ss_pred             hhccccccc----------ceeeeeecceeeecC
Q 016905          357 YRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       357 ~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      ++++.....          .+++.+|+|||+.+|
T Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i  114 (251)
T cd05041          81 TFLRKKKNRLTVKKLLQMSLDAAAGMEYLESKNC  114 (251)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            998653221          237789999998774

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.40  E-value=3.5e-13  Score=125.04  Aligned_cols=108  Identities=19%  Similarity=0.317  Sum_probs=87.3

Q ss_pred             cccccccccCCCeeEEEEEe-----CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCC--CceeE
Q 016905          273 FSESNIIGQGGFGKVYKGVL-----SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS--SERIL  345 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-----~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~--~~~~l  345 (380)
                      |+..+.||+|+||.||++.+     .++..||+|.+.........+.|.+|++++.+++||||+++.+++...  ...++
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQL   85 (283)
T ss_pred             ceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEE
Confidence            36678899999999988654     467899999986443333467889999999999999999999998653  35789


Q ss_pred             EeecccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      ||||+++|+|.+++.....        ..+++.||+|||+.+|
T Consensus        86 v~e~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~l~~lH~~~i  128 (283)
T cd05080          86 IMEYVPLGSLRDYLPKHKLNLAQLLLFAQQICEGMAYLHSQHY  128 (283)
T ss_pred             EecCCCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999999999999875322        1348899999999875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.40  E-value=3e-13  Score=123.95  Aligned_cols=108  Identities=20%  Similarity=0.265  Sum_probs=90.5

Q ss_pred             hcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      .+.|+..+.||+|+||.||++...++..+|+|.+...  ....+.|.+|++++.+++|+|++++.+++.. +..+++|||
T Consensus         5 ~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~v~e~   81 (260)
T cd05073           5 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG--SMSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIYIITEF   81 (260)
T ss_pred             ccceeEEeEecCccceEEEEEEecCCccEEEEecCCC--hhHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeEEEEEe
Confidence            4567788999999999999999877888999988532  2235679999999999999999999999877 778999999


Q ss_pred             ccCCChhhhccccccc-----------ceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHKI-----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~~-----------~~~~~aL~yLH~~~i  380 (380)
                      +++|+|.++++.....           .+++.||+|||+.++
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i  123 (260)
T cd05073          82 MAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNY  123 (260)
T ss_pred             CCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9999999999753211           348999999998774

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.40  E-value=3.2e-13  Score=140.14  Aligned_cols=110  Identities=21%  Similarity=0.245  Sum_probs=92.8

Q ss_pred             cCcccccccccCCCeeEEEEEeC-CCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|...+.||+|+||.||+|... +++.||||++....  .......+.+|+.++..++||||+++++++...+..++||
T Consensus         4 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lVm   83 (669)
T cd05610           4 EEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLVM   83 (669)
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEEE
Confidence            56888899999999999999984 68999999986321  2223567899999999999999999999999889999999


Q ss_pred             ecccCCChhhhcccccc---------cceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHK---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~---------~~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.++++....         ..+++.||+|||+.+|
T Consensus        84 Ey~~g~~L~~li~~~~~l~~~~~~~i~~qil~aL~yLH~~gI  125 (669)
T cd05610          84 EYLIGGDVKSLLHIYGYFDEEMAVKYISEVALALDYLHRHGI  125 (669)
T ss_pred             eCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            99999999999875332         2448999999999875

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.40  E-value=3.5e-13  Score=123.51  Aligned_cols=109  Identities=17%  Similarity=0.200  Sum_probs=92.4

Q ss_pred             CcccccccccCCCeeEEEEEeC-CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          272 NFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      +|+..+.||+|++|.||++... +++.+|+|++.........+++.+|++++.+++||||+++++++...+..++++||+
T Consensus         2 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   81 (265)
T cd06605           2 DLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEYM   81 (265)
T ss_pred             cchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEec
Confidence            5666788999999999999984 689999999865444445678999999999999999999999999999999999999


Q ss_pred             cCCChhhhcccc-ccc---------ceeeeeecceee-ecC
Q 016905          351 QNLSVAYRLRVS-HKI---------YTKIISLSSLHC-FSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~-~~~---------~~~~~aL~yLH~-~~i  380 (380)
                      ++++|.+++... ...         .+++.|++|||+ .+|
T Consensus        82 ~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~i  122 (265)
T cd06605          82 DGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEKHKI  122 (265)
T ss_pred             CCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCCCe
Confidence            999999999754 221         348899999999 664

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.40  E-value=4.2e-13  Score=122.45  Aligned_cols=109  Identities=17%  Similarity=0.270  Sum_probs=91.3

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      +|+..+.||+|+||.+|++.. .+|+.+|+|++... ......+++.+|++++++++||||+++.+++...+..++||||
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDY   80 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEec
Confidence            367788999999999999988 56889999998632 2233456899999999999999999999999999999999999


Q ss_pred             ccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      +++|+|.++++....           ..+++.|++|||+.++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i  122 (256)
T cd08218          81 CEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRKI  122 (256)
T ss_pred             CCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            999999999875322           1348899999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.40  E-value=9.1e-14  Score=127.28  Aligned_cols=103  Identities=25%  Similarity=0.365  Sum_probs=84.3

Q ss_pred             cccccCCCeeEEEEEeCC-C-------cEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          277 NIIGQGGFGKVYKGVLSD-N-------TKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~~~-g-------~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      +.||+|+||.||+|.... +       ..+|+|.+... .....+.|.+|+.++..++|||++++++++..++..++|||
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   79 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKS-HRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQE   79 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcch-hHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEe
Confidence            468999999999998722 2       34888887432 23345678999999999999999999999999889999999


Q ss_pred             cccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.++++..+..          .+++.||+|||+++|
T Consensus        80 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  121 (258)
T cd05078          80 YVKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLEDKGL  121 (258)
T ss_pred             cCCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            99999999999764332          348899999999885

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.40  E-value=4.6e-13  Score=122.19  Aligned_cols=108  Identities=27%  Similarity=0.399  Sum_probs=90.7

Q ss_pred             cCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      .+|+..+.||+|+||.||++...++..+|+|.+...  .....+|.+|++++.+++|||++++++++......++||||+
T Consensus         4 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   81 (256)
T cd05112           4 SELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREG--AMSEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFM   81 (256)
T ss_pred             hHeEEEeeecCcccceEEEEEEeCCCeEEEEECCCC--CCCHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcC
Confidence            356677899999999999999877889999988532  223567999999999999999999999999988999999999


Q ss_pred             cCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      ++|+|.++++.....          .+++.+++|||+.+|
T Consensus        82 ~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i  121 (256)
T cd05112          82 EHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSNV  121 (256)
T ss_pred             CCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            999999998754221          237889999998775

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.40  E-value=3.4e-13  Score=126.06  Aligned_cols=109  Identities=17%  Similarity=0.253  Sum_probs=91.7

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      .+|+..+.||+|+||.||++.. .++..+|+|.+... .....+.+.+|+.++.+++|||++++++++...+..++|+||
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~-~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~   97 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQ-QQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEY   97 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccc-cchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEec
Confidence            5677788999999999999986 56889999998532 233457789999999999999999999999999999999999


Q ss_pred             ccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      +++|+|.+++.....        ..+++.|+.|||++++
T Consensus        98 ~~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH~~gi  136 (293)
T cd06647          98 LAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQV  136 (293)
T ss_pred             CCCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            999999999875321        2348889999999874

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.39  E-value=3.4e-13  Score=125.06  Aligned_cols=107  Identities=19%  Similarity=0.252  Sum_probs=88.6

Q ss_pred             cccccccccCCCeeEEEEEeC-CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeeccc
Q 016905          273 FSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQ  351 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~  351 (380)
                      |+..+.||+|+||.||+|... ++..+++|.+... .....+.|.+|++++..++|||++++++++..++..++||||++
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~   85 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTK-SEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCA   85 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCC-CHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecC
Confidence            445677999999999999984 5788999988532 23346779999999999999999999999999999999999999


Q ss_pred             CCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          352 NLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       352 ~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      +|+|.++++....          ..+++.||+|||+.+|
T Consensus        86 ~~~l~~~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~~i  124 (282)
T cd06643          86 GGAVDAVMLELERPLTEPQIRVVCKQTLEALNYLHENKI  124 (282)
T ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999998764221          1348999999999875

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.39  E-value=1.6e-13  Score=126.09  Aligned_cols=104  Identities=27%  Similarity=0.445  Sum_probs=85.6

Q ss_pred             cccccCCCeeEEEEEeCC-------CcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          277 NIIGQGGFGKVYKGVLSD-------NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~~~-------g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      +.||+|+||.||+|...+       +..+|+|.+...........|.+|+.++++++||||+++++++...+..++||||
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMEL   80 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEec
Confidence            368999999999998732       2579999886443334567899999999999999999999999998899999999


Q ss_pred             ccCCChhhhcccccc----------------cceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHK----------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~----------------~~~~~~aL~yLH~~~i  380 (380)
                      +++|+|.++++....                ..+++.||+|||+.++
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i  127 (269)
T cd05044          81 MEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMHF  127 (269)
T ss_pred             cCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999999999974321                1248889999999874

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.39  E-value=4.4e-13  Score=125.54  Aligned_cols=109  Identities=16%  Similarity=0.246  Sum_probs=92.3

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      .+|+..+.||+|++|.||+|+. .+++.|++|.+... .....+.+.+|+++++.++|||++++++++...+..++|+||
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   97 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQ-KQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEY   97 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecc-cCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEe
Confidence            4577888999999999999987 67899999998543 233467789999999999999999999999999999999999


Q ss_pred             ccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      +++|+|.+++.....        ..+++.|++|||+++|
T Consensus        98 ~~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH~~~i  136 (296)
T cd06655          98 LAGGSLTDVVTETCMDEAQIAAVCRECLQALEFLHANQV  136 (296)
T ss_pred             cCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            999999998875421        1237889999999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.39  E-value=3.8e-13  Score=124.72  Aligned_cols=108  Identities=24%  Similarity=0.382  Sum_probs=89.0

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      +|+..+.||+|++|.||+|+. .+++.||||++.... .....+.+.+|++++.+++||||+++++++..++..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF   80 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeec
Confidence            477788999999999999998 568999999986322 222346789999999999999999999999999999999999


Q ss_pred             ccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      ++ ++|.++++....           ..+++.||+|||+.+|
T Consensus        81 ~~-~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~i  121 (284)
T cd07860          81 LH-QDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHRV  121 (284)
T ss_pred             cc-cCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            96 689988864321           1248899999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.39  E-value=3.7e-13  Score=123.99  Aligned_cols=109  Identities=26%  Similarity=0.370  Sum_probs=88.2

Q ss_pred             cCcccccccccCCCeeEEEEEeCC----CcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLSD----NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~~----g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      ++|...+.||+|+||.||+|...+    ...||||...........+.|.+|+.++.+++||||+++++++.. +..++|
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~lv   84 (270)
T cd05056           6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITE-NPVWIV   84 (270)
T ss_pred             hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcC-CCcEEE
Confidence            346678899999999999998733    247999988644334456789999999999999999999998875 567899


Q ss_pred             eecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.+++......          .+++.||+|||+.++
T Consensus        85 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~  128 (270)
T cd05056          85 MELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLESKRF  128 (270)
T ss_pred             EEcCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999999999999753321          348999999998874

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.39  E-value=6.8e-13  Score=121.81  Aligned_cols=108  Identities=25%  Similarity=0.332  Sum_probs=89.0

Q ss_pred             cccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCC--------chHHHHHHHHHHHhcCcCCCCccceeeeeCCCce
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSP--------GGEAAFQREVHLISVAIHKNLLQLIGYCTTSSER  343 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--------~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~  343 (380)
                      |.....||+|++|.||+|.. .+++.+|+|.+......        ...+.+.+|+.++.+++||||+++++++...+..
T Consensus         2 ~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   81 (267)
T cd06628           2 WIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHL   81 (267)
T ss_pred             ccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCcc
Confidence            45567899999999999987 56889999988532211        1135688999999999999999999999999999


Q ss_pred             eEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ++||||+++++|.+++......         .+++.||+|||+.+|
T Consensus        82 ~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lH~~~i  127 (267)
T cd06628          82 NIFLEYVPGGSVAALLNNYGAFEETLVRNFVRQILKGLNYLHNRGI  127 (267)
T ss_pred             EEEEEecCCCCHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhcCc
Confidence            9999999999999999754332         348899999998875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.39  E-value=6.2e-13  Score=123.27  Aligned_cols=108  Identities=19%  Similarity=0.277  Sum_probs=90.7

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC-CchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS-PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      +|+..+.||+|+||.||+|.. .+|+.||+|++..... ....+.+.+|+.++.+++||||+++++++..++..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~   80 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEY   80 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEecc
Confidence            366778899999999999998 5689999999964322 33467899999999999999999999999999999999999


Q ss_pred             ccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      + +++|.++++....          ..+++.||+|||+.+|
T Consensus        81 ~-~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  120 (286)
T cd07832          81 M-PSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHANGI  120 (286)
T ss_pred             c-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9 9999999864322          1348899999999875

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.39  E-value=3.4e-15  Score=130.07  Aligned_cols=111  Identities=20%  Similarity=0.263  Sum_probs=93.7

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEec-ccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQ-DYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~-~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++.|+..++||+|.|+.||++.. ++|+.+|+|.+. ...+..+.++..+|+++...++|||||+|...+.+....+||+
T Consensus        10 ~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvF   89 (355)
T KOG0033|consen   10 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF   89 (355)
T ss_pred             chhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEE
Confidence            34566678899999999999988 789999999886 2334456788999999999999999999999999999999999


Q ss_pred             ecccCCChhhhcccc---------cccceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVS---------HKIYTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~---------~~~~~~~~aL~yLH~~~i  380 (380)
                      |+|.+|+|..-|-.+         ...+|+++||+|||..+|
T Consensus        90 e~m~G~dl~~eIV~R~~ySEa~aSH~~rQiLeal~yCH~n~I  131 (355)
T KOG0033|consen   90 DLVTGGELFEDIVAREFYSEADASHCIQQILEALAYCHSNGI  131 (355)
T ss_pred             ecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            999999998766433         223669999999999876

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.38  E-value=6e-13  Score=121.68  Aligned_cols=110  Identities=19%  Similarity=0.243  Sum_probs=93.3

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .++|+..+.+|+|+||.||++.. .+++.+++|.+.... ....+.+.+|++++++++||||+++++++...+..+++||
T Consensus         2 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e   80 (262)
T cd06613           2 QEDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEP-GDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVME   80 (262)
T ss_pred             ccceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCc-hhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEe
Confidence            35678889999999999999998 467899999986432 2356789999999999999999999999999999999999


Q ss_pred             cccCCChhhhcccc-cc---------cceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVS-HK---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~-~~---------~~~~~~aL~yLH~~~i  380 (380)
                      |+++++|.++++.. ..         ..+++.||+|||+.+|
T Consensus        81 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~i  122 (262)
T cd06613          81 YCGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLHETGK  122 (262)
T ss_pred             CCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999998754 22         2348899999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.38  E-value=4.9e-13  Score=121.80  Aligned_cols=107  Identities=19%  Similarity=0.317  Sum_probs=91.6

Q ss_pred             cCcccccccccCCCeeEEEEEeCC-CcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLSD-NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~~-g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      ++|+..+.||+|+||.||+|...+ +..+++|.+....   ..++|.+|++++++++||||+++++++..++..++++||
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~---~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~   79 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEE---DLQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEY   79 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHH---HHHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEec
Confidence            567888999999999999999854 7899999985321   267899999999999999999999999999999999999


Q ss_pred             ccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      +++++|.++++.....          .+++.|+.|||+.+|
T Consensus        80 ~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~~l~~lh~~~i  120 (256)
T cd06612          80 CGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSNKK  120 (256)
T ss_pred             CCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            9999999998653321          338899999998775

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.38  E-value=5.3e-13  Score=122.26  Aligned_cols=107  Identities=22%  Similarity=0.285  Sum_probs=88.0

Q ss_pred             cCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      +.|...+.||+|++|.||++....+..+|+|.+...  ....+.|.+|++++.+++|+|++++++++. .+..++||||+
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~   82 (260)
T cd05069           6 ESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPG--TMMPEAFLQEAQIMKKLRHDKLVPLYAVVS-EEPIYIVTEFM   82 (260)
T ss_pred             HHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccC--CccHHHHHHHHHHHHhCCCCCeeeEEEEEc-CCCcEEEEEcC
Confidence            346677889999999999999877778999988542  223567999999999999999999998875 45688999999


Q ss_pred             cCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      ++|+|.++++....           ..+++.||+|||+.+|
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i  123 (260)
T cd05069          83 GKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNY  123 (260)
T ss_pred             CCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            99999999975322           1348899999999875

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.38  E-value=6.3e-13  Score=121.11  Aligned_cols=104  Identities=30%  Similarity=0.455  Sum_probs=88.4

Q ss_pred             cccccCCCeeEEEEEeCC----CcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccC
Q 016905          277 NIIGQGGFGKVYKGVLSD----NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQN  352 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~~~----g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~  352 (380)
                      +.||+|+||.||++....    +..+++|.+.........+.+.+|++.+.+++|+|++++++++...+..++||||+++
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEG   80 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccC
Confidence            468999999999999843    7899999997543333467899999999999999999999999998999999999999


Q ss_pred             CChhhhcccc---------ccc---------ceeeeeecceeeecC
Q 016905          353 LSVAYRLRVS---------HKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       353 GsL~~~L~~~---------~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+|.++++..         ...         .+++.||+|||+.+|
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i  126 (262)
T cd00192          81 GDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKF  126 (262)
T ss_pred             CcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCc
Confidence            9999999865         221         238899999999875

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.38  E-value=3.6e-13  Score=122.94  Aligned_cols=103  Identities=25%  Similarity=0.271  Sum_probs=85.9

Q ss_pred             cccccCCCeeEEEEEeC--CCc--EEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccC
Q 016905          277 NIIGQGGFGKVYKGVLS--DNT--KVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQN  352 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~~--~g~--~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~  352 (380)
                      ++||+|++|.||+|.+.  .++  .||+|.+.........+.|.+|+.++++++||||+++++++.. ...++||||+++
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~~   79 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELAPL   79 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEecCC
Confidence            46899999999999973  333  6999999754332457789999999999999999999999988 889999999999


Q ss_pred             CChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          353 LSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       353 GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      |+|.+++.....           ..+++.||+|||+.+|
T Consensus        80 ~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i  118 (257)
T cd05040          80 GSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKRF  118 (257)
T ss_pred             CcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999999976541           1348999999999875

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.38  E-value=5.9e-13  Score=124.19  Aligned_cols=109  Identities=18%  Similarity=0.274  Sum_probs=91.3

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      +.|+..+.||+|+||.||+|.. .++..+++|.+... .....+.|.+|+.++..++|||++++++++..++..++||||
T Consensus        12 ~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   90 (292)
T cd06644          12 EVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETK-SEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIEF   90 (292)
T ss_pred             hhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccC-CHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEec
Confidence            5577788999999999999998 45889999998532 333567789999999999999999999999988999999999


Q ss_pred             ccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      +++|+|..++.....          ..+++.+++|||+.+|
T Consensus        91 ~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i  131 (292)
T cd06644          91 CPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHSMKI  131 (292)
T ss_pred             CCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCe
Confidence            999999888754322          1348899999999875

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.38  E-value=3.8e-13  Score=124.72  Aligned_cols=108  Identities=22%  Similarity=0.304  Sum_probs=88.5

Q ss_pred             cccccccccCCCeeEEEEEeC------CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          273 FSESNIIGQGGFGKVYKGVLS------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      |+..+.||+|+||.||+|...      ++..||+|++.........+.|.+|+.++..++||||+++++++...+..+++
T Consensus         7 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~~   86 (283)
T cd05091           7 VRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSMI   86 (283)
T ss_pred             HHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceEEE
Confidence            455678999999999999862      25789999996443333456789999999999999999999999999999999


Q ss_pred             eecccCCChhhhccccc-------------------------ccceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSH-------------------------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~-------------------------~~~~~~~aL~yLH~~~i  380 (380)
                      +||+++++|.+++....                         ...+++.||+|||+++|
T Consensus        87 ~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~gi  145 (283)
T cd05091          87 FSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHHV  145 (283)
T ss_pred             EEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHcCc
Confidence            99999999999985221                         11358899999999875

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.38  E-value=5.1e-13  Score=130.16  Aligned_cols=103  Identities=19%  Similarity=0.234  Sum_probs=87.8

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      ..+|+..+.||+|+||.||++.. .+++.||+|...       .+.+.+|++++++++|||||++++++...+..++|+|
T Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~-------~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e  163 (391)
T PHA03212         91 KAGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ-------RGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILP  163 (391)
T ss_pred             cCCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh-------hhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEe
Confidence            35789999999999999999998 568899999752       2457899999999999999999999999889999999


Q ss_pred             cccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+. ++|.+++......         .+++.||+|||+++|
T Consensus       164 ~~~-~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~ylH~~~I  203 (391)
T PHA03212        164 RYK-TDLYCYLAAKRNIAICDILAIERSVLRAIQYLHENRI  203 (391)
T ss_pred             cCC-CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            995 7899888654332         348899999999886

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.38  E-value=8.1e-13  Score=121.47  Aligned_cols=110  Identities=22%  Similarity=0.307  Sum_probs=89.4

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC----CCchHHHHHHHHHHHhcCcCCCCccceeeeeC--CCce
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY----SPGGEAAFQREVHLISVAIHKNLLQLIGYCTT--SSER  343 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~----~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~--~~~~  343 (380)
                      .+|+..+.||+|+||.||++.. .++..+|+|++....    .....+.+.+|+.++.+++||||+++++++..  ++..
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTL   81 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEE
Confidence            3678889999999999999998 568999999885221    11234568899999999999999999998865  3567


Q ss_pred             eEEeecccCCChhhhcccccc---------cceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHK---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~---------~~~~~~aL~yLH~~~i  380 (380)
                      ++++||+++++|.++++....         ..+++.||+|||+.+|
T Consensus        82 ~l~~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~LH~~~i  127 (266)
T cd06651          82 TIFMEYMPGGSVKDQLKAYGALTESVTRKYTRQILEGMSYLHSNMI  127 (266)
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            899999999999999875433         2448999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.37  E-value=4e-13  Score=132.27  Aligned_cols=113  Identities=21%  Similarity=0.281  Sum_probs=92.5

Q ss_pred             HHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCce
Q 016905          268 LATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSER  343 (380)
Q Consensus       268 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~  343 (380)
                      ...++|....+||+|+||.|+.+.+ .+++.+|||.+++..  ..++.+..+.|.+++.-. +||.|++|++.+.+.+..
T Consensus       365 ~~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l  444 (694)
T KOG0694|consen  365 LTLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHL  444 (694)
T ss_pred             ccccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeE
Confidence            3456888999999999999999999 568899999997432  334567788888888766 599999999999999999


Q ss_pred             eEEeecccCCChhhhccccccc--------ceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHKI--------YTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~~--------~~~~~aL~yLH~~~i  380 (380)
                      +.||||+.+|++..+.+...-.        .+++.||+|||+.||
T Consensus       445 ~fvmey~~Ggdm~~~~~~~~F~e~rarfyaAev~l~L~fLH~~~I  489 (694)
T KOG0694|consen  445 FFVMEYVAGGDLMHHIHTDVFSEPRARFYAAEVVLGLQFLHENGI  489 (694)
T ss_pred             EEEEEecCCCcEEEEEecccccHHHHHHHHHHHHHHHHHHHhcCc
Confidence            9999999999966555532211        249999999999987

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.37  E-value=5.2e-13  Score=123.84  Aligned_cols=109  Identities=26%  Similarity=0.425  Sum_probs=90.0

Q ss_pred             cCcccccccccCCCeeEEEEEe------CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCcee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~  344 (380)
                      .+++...+||+|+||.||++..      .++..+|+|.+... .....+.|.+|++++.+++|+||+++++++...+..+
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   83 (280)
T cd05092           5 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA-SESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLL   83 (280)
T ss_pred             HhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcC-CHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceE
Confidence            3566678999999999999964      24568999988542 3345678999999999999999999999999988999


Q ss_pred             EEeecccCCChhhhcccccc------------------------cceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHK------------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~------------------------~~~~~~aL~yLH~~~i  380 (380)
                      ++|||+++|+|.++++....                        ..+++.|++|||+.+|
T Consensus        84 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~~i  143 (280)
T cd05092          84 MVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLHF  143 (280)
T ss_pred             EEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            99999999999999875431                        1348889999999875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.37  E-value=8.2e-13  Score=121.02  Aligned_cols=102  Identities=17%  Similarity=0.212  Sum_probs=86.7

Q ss_pred             cccCCCeeEEEEEeC-CCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCCCh
Q 016905          279 IGQGGFGKVYKGVLS-DNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSV  355 (380)
Q Consensus       279 lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~GsL  355 (380)
                      ||+|++|.||+++.. +++.+|+|.+....  .....+.+.+|+.++.+++||||+++++++..++..++|+||+++|+|
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGEL   80 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcH
Confidence            689999999999984 48899999986322  223457799999999999999999999999999999999999999999


Q ss_pred             hhhccccccc---------ceeeeeecceeeecC
Q 016905          356 AYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       356 ~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      .++++.....         .+++.||+|||+.++
T Consensus        81 ~~~l~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~  114 (262)
T cd05572          81 WTILRDRGLFDEYTARFYIACVVLAFEYLHNRGI  114 (262)
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCc
Confidence            9999765432         348899999999874

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.37  E-value=7.9e-13  Score=124.77  Aligned_cols=109  Identities=18%  Similarity=0.209  Sum_probs=91.7

Q ss_pred             CcccccccccCCCeeEEEEEeC-CCcEEEEEEecccCCC--chHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          272 NFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYYSP--GGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~--~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      +|+..+.||+|++|.||++... ++..+|+|.+......  ...+.+..|++++.+++|+||+++++++...+..++|||
T Consensus         2 ~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   81 (316)
T cd05574           2 HFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVMD   81 (316)
T ss_pred             ceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEEE
Confidence            5777889999999999999984 5899999999643222  245678999999999999999999999999999999999


Q ss_pred             cccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.++++....           ..+++.||+|||+.++
T Consensus        82 ~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i  124 (316)
T cd05574          82 YCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLLGI  124 (316)
T ss_pred             ecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999999999875321           1348899999999874

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.37  E-value=7.8e-13  Score=120.88  Aligned_cols=103  Identities=26%  Similarity=0.411  Sum_probs=84.3

Q ss_pred             cccccCCCeeEEEEEe--CC--CcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccC
Q 016905          277 NIIGQGGFGKVYKGVL--SD--NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQN  352 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~--~~--g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~  352 (380)
                      ++||+|+||.||+|++  ++  +..+|+|.+.........+++.+|+.++.+++|+||+++++++. .+..++||||+++
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~~~~   79 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCK-GEPLMLVMELAPL   79 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEc-CCceEEEEEeCCC
Confidence            4689999999999987  22  26899999875433335678999999999999999999999876 4568999999999


Q ss_pred             CChhhhccccccc---------ceeeeeecceeeecC
Q 016905          353 LSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       353 GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+|.++++.....         .+++.||+|||+.++
T Consensus        80 ~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i  116 (257)
T cd05060          80 GPLLKYLKKRREIPVSDLKELAHQVAMGMAYLESKHF  116 (257)
T ss_pred             CcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCe
Confidence            9999999765432         338999999998774

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.37  E-value=7.7e-13  Score=124.26  Aligned_cols=109  Identities=23%  Similarity=0.390  Sum_probs=87.4

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCc----EEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeE
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNT----KVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~----~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~l  345 (380)
                      ++|+..+.||+|+||.||+|.. .+|.    .+|+|.+..........+|.+|+.++.+++||||++++|+|... ..++
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-~~~~   85 (303)
T cd05110           7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-TIQL   85 (303)
T ss_pred             hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-Ccee
Confidence            4566778999999999999987 3444    57999886433333455789999999999999999999998754 4678


Q ss_pred             EeecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      ++||+++|+|.+++.....          ..+++.||+|||+.+|
T Consensus        86 v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i  130 (303)
T cd05110          86 VTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEERRL  130 (303)
T ss_pred             eehhcCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHhhcCe
Confidence            9999999999999875432          1358999999999875

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.37  E-value=8.7e-13  Score=120.12  Aligned_cols=107  Identities=26%  Similarity=0.448  Sum_probs=90.2

Q ss_pred             ccccccccCCCeeEEEEEeCC-----CcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          274 SESNIIGQGGFGKVYKGVLSD-----NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       274 ~~~~~lg~G~~g~Vy~~~~~~-----g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      +..+.||+|+||.||++...+     +..||+|++.........+.+.+|++.+.+++|+||+++++++...+..+++||
T Consensus         2 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~e   81 (258)
T smart00219        2 TLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVME   81 (258)
T ss_pred             cccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEEe
Confidence            446789999999999999843     388999999654333357789999999999999999999999999999999999


Q ss_pred             cccCCChhhhcccccc--c---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK--I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~--~---------~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.++++....  .         .+++.||+|||+.++
T Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~~  124 (258)
T smart00219       82 YMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKNF  124 (258)
T ss_pred             ccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcCCe
Confidence            9999999999975443  1         348899999999874

Phosphotransferases. Tyrosine-specific kinase subfamily.

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.36  E-value=7.8e-13  Score=123.41  Aligned_cols=109  Identities=22%  Similarity=0.402  Sum_probs=89.5

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      ++|+..+.||+|++|.||+|.. .+++.||+|++.... .....+.+.+|++++++++||||+++++++..++..++|||
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   81 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFE   81 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEe
Confidence            4677889999999999999998 468899999986322 22335678899999999999999999999999999999999


Q ss_pred             cccCCChhhhccccccc-----------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKI-----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~-----------~~~~~aL~yLH~~~i  380 (380)
                      |++ ++|.+++......           .+++.||+|||+.+|
T Consensus        82 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i  123 (294)
T PLN00009         82 YLD-LDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSHRV  123 (294)
T ss_pred             ccc-ccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            996 5888887543221           358999999999875

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.36  E-value=4.5e-13  Score=125.23  Aligned_cols=106  Identities=19%  Similarity=0.207  Sum_probs=88.1

Q ss_pred             ccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccC
Q 016905          274 SESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQN  352 (380)
Q Consensus       274 ~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~  352 (380)
                      .....||+|+||.||++.. .++..||||++... .....+.+.+|+..+..++|+||+++++++..++..++||||+++
T Consensus        25 ~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~  103 (292)
T cd06658          25 DSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLR-KQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEG  103 (292)
T ss_pred             hhhhcccCCCCeEEEEEEECCCCCEEEEEEEecc-hHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCC
Confidence            3346699999999999987 56889999998532 233466789999999999999999999999999999999999999


Q ss_pred             CChhhhcccccc--------cceeeeeecceeeecC
Q 016905          353 LSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       353 GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      ++|.+++.....        ..+++.|++|||+++|
T Consensus       104 ~~L~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~i  139 (292)
T cd06658         104 GALTDIVTHTRMNEEQIATVCLSVLRALSYLHNQGV  139 (292)
T ss_pred             CcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            999998854321        1348899999999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.36  E-value=8.7e-13  Score=122.17  Aligned_cols=107  Identities=16%  Similarity=0.188  Sum_probs=84.6

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHH-HhcCcCCCCccceeeeeCCCceeEEee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHL-ISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~-l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      ++|+..+.||+|+||.||+++. .+|+.||+|++...........+..|+.. ++..+|||++++++++..++..+++||
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e   80 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICME   80 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhh
Confidence            3677889999999999999998 56999999998644333344566667765 556689999999999999999999999


Q ss_pred             cccCCChhhhcccccc-------------cceeeeeecceeee
Q 016905          349 FMQNLSVAYRLRVSHK-------------IYTKIISLSSLHCF  378 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~-------------~~~~~~aL~yLH~~  378 (380)
                      ||+ |+|.++++....             ..+++.||+|||+.
T Consensus        81 ~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~  122 (283)
T cd06617          81 VMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSK  122 (283)
T ss_pred             hhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhc
Confidence            997 688888754211             12388999999985

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.36  E-value=4.6e-13  Score=124.79  Aligned_cols=118  Identities=24%  Similarity=0.353  Sum_probs=95.4

Q ss_pred             eCHHHHHHHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeee
Q 016905          261 FSCRELQLATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCT  338 (380)
Q Consensus       261 ~~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~  338 (380)
                      ++.+++..++++|+..+.||+|+||.||++.. .+++.+|+|.+...  ......+.+|+.++.++ +|||++++++++.
T Consensus        12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~--~~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~   89 (291)
T cd06639          12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPI--SDVDEEIEAEYNILQSLPNHPNVVKFYGMFY   89 (291)
T ss_pred             hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEeccc--ccHHHHHHHHHHHHHHhcCCCCeEEEEEEEE
Confidence            45566777889999999999999999999998 56889999998532  22356778899999998 8999999999987


Q ss_pred             CC-----CceeEEeecccCCChhhhcccc----cc---------cceeeeeecceeeecC
Q 016905          339 TS-----SERILVYPFMQNLSVAYRLRVS----HK---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       339 ~~-----~~~~lV~Ey~~~GsL~~~L~~~----~~---------~~~~~~aL~yLH~~~i  380 (380)
                      ..     +..++||||+++|+|.++++..    ..         ..+++.||+|||+.+|
T Consensus        90 ~~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i  149 (291)
T cd06639          90 KADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNRI  149 (291)
T ss_pred             eccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            53     3579999999999999988631    11         1237889999998774

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.36  E-value=5.9e-13  Score=123.57  Aligned_cols=109  Identities=16%  Similarity=0.291  Sum_probs=89.8

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      +|+..+.||+|+||.||+|.. ++++.||+|++.... .....+.+.+|++++++++|+||+++++++..++..++||||
T Consensus         2 ~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~   81 (288)
T cd07833           2 KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEY   81 (288)
T ss_pred             ceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEec
Confidence            577789999999999999998 468899999986422 233457899999999999999999999999999999999999


Q ss_pred             ccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ++++.+..+.......         .+++.|++|||+.+|
T Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i  121 (288)
T cd07833          82 VERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHNI  121 (288)
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9987777665433222         348999999998774

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.36  E-value=2.3e-13  Score=124.23  Aligned_cols=108  Identities=23%  Similarity=0.352  Sum_probs=87.4

Q ss_pred             cccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCc-hHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPG-GEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~-~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      |+..+.||+|+||+||++.. .+++.+|+|.+....... ......+|+..+.+++||||+++++++...+..++||||+
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~   80 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYC   80 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhcccccccccccccccccccccccccccccc
Confidence            45678899999999999999 456789999996432221 1223456999999999999999999999999999999999


Q ss_pred             cCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ++++|.+++......         .+++.||+|||+.+|
T Consensus        81 ~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~Lh~~~i  119 (260)
T PF00069_consen   81 PGGSLQDYLQKNKPLSEEEILKIAYQILEALAYLHSKGI  119 (260)
T ss_dssp             TTEBHHHHHHHHSSBBHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             ccccccccccccccccccccccccccccccccccccccc
Confidence            999999999833332         348999999998764

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.36  E-value=5.8e-13  Score=122.48  Aligned_cols=110  Identities=23%  Similarity=0.296  Sum_probs=91.0

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCC-----
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSS-----  341 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~-----  341 (380)
                      ++++|+..+.||+|++|.||+|.. .+++.+++|.+...  ....+.|.+|++++.++ +|+||+++++++....     
T Consensus         4 ~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~--~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~   81 (275)
T cd06608           4 PTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDII--EDEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGND   81 (275)
T ss_pred             chhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecC--chhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcc
Confidence            567888899999999999999998 45789999998542  22457799999999999 6999999999997644     


Q ss_pred             -ceeEEeecccCCChhhhccccc----c---------cceeeeeecceeeecC
Q 016905          342 -ERILVYPFMQNLSVAYRLRVSH----K---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       342 -~~~lV~Ey~~~GsL~~~L~~~~----~---------~~~~~~aL~yLH~~~i  380 (380)
                       ..++||||+++++|.++++...    .         ..+++.||+|||+.+|
T Consensus        82 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i  134 (275)
T cd06608          82 DQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENKV  134 (275)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCCc
Confidence             4899999999999999986532    1         1348999999999875

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.36  E-value=1e-12  Score=121.02  Aligned_cols=107  Identities=25%  Similarity=0.401  Sum_probs=82.9

Q ss_pred             ccccccccCCCeeEEEEEeCC-Cc--EEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCC------Cce
Q 016905          274 SESNIIGQGGFGKVYKGVLSD-NT--KVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS------SER  343 (380)
Q Consensus       274 ~~~~~lg~G~~g~Vy~~~~~~-g~--~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~------~~~  343 (380)
                      ...++||+|+||.||+|...+ +.  .+|+|.++... .....+.|..|++++.+++|+||++++++|...      ...
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   81 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSP   81 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCc
Confidence            346789999999999999843 33  68999886432 233467899999999999999999999988532      246


Q ss_pred             eEEeecccCCChhhhccccc-----c----------cceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSH-----K----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~-----~----------~~~~~~aL~yLH~~~i  380 (380)
                      +++||||++|+|.+++...+     .          ..+++.||+|||+.+|
T Consensus        82 ~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  133 (272)
T cd05075          82 VVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKSF  133 (272)
T ss_pred             EEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            89999999999998874211     1          1348899999999875

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.36  E-value=9.2e-13  Score=122.45  Aligned_cols=110  Identities=18%  Similarity=0.289  Sum_probs=94.2

Q ss_pred             HhcCcccccccccCCCeeEEEEEeC-CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      .++.|+..+.+|+|++|.||++... ++..+++|++.....  ..+.+.+|++.+.+++|+|++++++++...+..++|+
T Consensus        17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   94 (286)
T cd06614          17 PRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ--NKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVM   94 (286)
T ss_pred             ccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch--hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEE
Confidence            5566777889999999999999985 688999999964322  4677899999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccc-cc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSH-KI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~-~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++++|.++++... ..         .+++.||+|||+.||
T Consensus        95 e~~~~~~L~~~l~~~~~~l~~~~~~~i~~~i~~~L~~lH~~gi  137 (286)
T cd06614          95 EYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLHSQNV  137 (286)
T ss_pred             eccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999999999998764 21         338899999999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.36  E-value=6.2e-13  Score=127.09  Aligned_cols=104  Identities=22%  Similarity=0.337  Sum_probs=87.6

Q ss_pred             ccccccCCCeeEEEEEe-CCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCC
Q 016905          276 SNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNL  353 (380)
Q Consensus       276 ~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~G  353 (380)
                      .++||+|.||+||-|+. ++|+.||||.+.+. ..........+|+.+|.+++||.||.+.-.|.+.+..++|||-+ +|
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl-~G  647 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKL-HG  647 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhh-cc
Confidence            57899999999999998 67999999999632 23345678999999999999999999999999999999999999 56


Q ss_pred             Chhhhccccccc-----------ceeeeeecceeeecC
Q 016905          354 SVAYRLRVSHKI-----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       354 sL~~~L~~~~~~-----------~~~~~aL~yLH~~~i  380 (380)
                      ++.+.|-.....           .+++.||.|||.++|
T Consensus       648 DMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~knI  685 (888)
T KOG4236|consen  648 DMLEMILSSEKGRLPERITKFLVTQILVALRYLHFKNI  685 (888)
T ss_pred             hHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcce
Confidence            888777533222           248999999999887

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.36  E-value=7.5e-13  Score=126.39  Aligned_cols=109  Identities=16%  Similarity=0.175  Sum_probs=82.5

Q ss_pred             HhcCcccccccccCCCeeEEEEEeC--CCcEEEEEEecccC----CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCc
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVLS--DNTKVAVKRLQDYY----SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSE  342 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~~--~g~~vavK~l~~~~----~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~  342 (380)
                      ..++|+..++||+|+||+||+|...  +++.+|||++....    .....+.|.+|+++|.+++|+|+++.+..   .+.
T Consensus        16 ~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~---~~~   92 (365)
T PRK09188         16 LSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLA---TGK   92 (365)
T ss_pred             ccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEE---cCC
Confidence            4567888999999999999999873  57888999875321    12235679999999999999999963322   245


Q ss_pred             eeEEeecccCCChhhhccc--ccccceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRV--SHKIYTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~--~~~~~~~~~aL~yLH~~~i  380 (380)
                      .++||||+++++|......  .....+++.+|+|||++||
T Consensus        93 ~~LVmE~~~G~~L~~~~~~~~~~~~~~i~~aL~~lH~~gI  132 (365)
T PRK09188         93 DGLVRGWTEGVPLHLARPHGDPAWFRSAHRALRDLHRAGI  132 (365)
T ss_pred             cEEEEEccCCCCHHHhCccchHHHHHHHHHHHHHHHHCCC
Confidence            7999999999999743211  1223458899999999886

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.35  E-value=6e-13  Score=124.13  Aligned_cols=108  Identities=25%  Similarity=0.402  Sum_probs=88.9

Q ss_pred             CcccccccccCCCeeEEEEEe------CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeE
Q 016905          272 NFSESNIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~l  345 (380)
                      +|...+.||+|+||.||++..      .++..+++|.+... .....+.|.+|++++.+++|+||+++++++...+..++
T Consensus         6 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   84 (291)
T cd05094           6 DIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDP-TLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIM   84 (291)
T ss_pred             HeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCc-cHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceEE
Confidence            466678899999999999985      23457899988532 23345779999999999999999999999999999999


Q ss_pred             EeecccCCChhhhcccccc-------------------------cceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHK-------------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~-------------------------~~~~~~aL~yLH~~~i  380 (380)
                      ||||+++|+|.++++....                         ..+++.|++|||+.+|
T Consensus        85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i  144 (291)
T cd05094          85 VFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHF  144 (291)
T ss_pred             EEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999999999999965321                         1348899999999875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.35  E-value=1.3e-12  Score=120.00  Aligned_cols=110  Identities=20%  Similarity=0.293  Sum_probs=89.6

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc----CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCC--Cce
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY----YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS--SER  343 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~----~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~--~~~  343 (380)
                      .+|+..+.||+|+||.||+|.. .++..+|+|.+...    ......+.|.+|++++.+++|+||+++++++...  +..
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKL   81 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEE
Confidence            4678889999999999999997 56899999987421    1123456789999999999999999999998664  457


Q ss_pred             eEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ++++||+++++|.+++......         .+++.||.|||+.+|
T Consensus        82 ~~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i  127 (264)
T cd06653          82 SIFVEYMPGGSIKDQLKAYGALTENVTRRYTRQILQGVSYLHSNMI  127 (264)
T ss_pred             EEEEEeCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            8999999999999998754332         358999999998874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.35  E-value=7.3e-13  Score=124.11  Aligned_cols=106  Identities=18%  Similarity=0.180  Sum_probs=88.3

Q ss_pred             ccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccC
Q 016905          274 SESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQN  352 (380)
Q Consensus       274 ~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~  352 (380)
                      +....||+|+||.||++.. .+++.||+|.+... .....+.+.+|+.++..++||||+++++++..++..++||||+++
T Consensus        24 ~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~-~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~  102 (297)
T cd06659          24 ENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLR-KQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQG  102 (297)
T ss_pred             HhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEec-ccchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCC
Confidence            3345799999999999987 56899999998532 233456788999999999999999999999999999999999999


Q ss_pred             CChhhhcccccc--------cceeeeeecceeeecC
Q 016905          353 LSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       353 GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      |+|.+++.....        ..+++.||+|||+.+|
T Consensus       103 ~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i  138 (297)
T cd06659         103 GALTDIVSQTRLNEEQIATVCESVLQALCYLHSQGV  138 (297)
T ss_pred             CCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            999998765321        2348999999999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.35  E-value=5.3e-13  Score=133.90  Aligned_cols=113  Identities=16%  Similarity=0.161  Sum_probs=90.7

Q ss_pred             HHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCC----
Q 016905          268 LATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS----  341 (380)
Q Consensus       268 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~----  341 (380)
                      ...++|...++||+|+||.||++.. .+|+.||||++... .+......+.+|+..+..++|+|++++...+...+    
T Consensus        29 ~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~  108 (496)
T PTZ00283         29 EQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNP  108 (496)
T ss_pred             ccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCc
Confidence            3456888899999999999999987 67999999998632 23344567889999999999999999887765432    


Q ss_pred             ----ceeEEeecccCCChhhhcccccc-------------cceeeeeecceeeecC
Q 016905          342 ----ERILVYPFMQNLSVAYRLRVSHK-------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       342 ----~~~lV~Ey~~~GsL~~~L~~~~~-------------~~~~~~aL~yLH~~~i  380 (380)
                          ..++||||+++|+|.++|+.+..             ..+++.||+|||+.+|
T Consensus       109 ~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~I  164 (496)
T PTZ00283        109 ENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHM  164 (496)
T ss_pred             ccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence                26799999999999999864321             1358999999999875

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.35  E-value=1.2e-12  Score=121.93  Aligned_cols=109  Identities=17%  Similarity=0.233  Sum_probs=89.7

Q ss_pred             CcccccccccCCCeeEEEEEe----CCCcEEEEEEecccC---CCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCce
Q 016905          272 NFSESNIIGQGGFGKVYKGVL----SDNTKVAVKRLQDYY---SPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSER  343 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~----~~g~~vavK~l~~~~---~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~  343 (380)
                      +|+..+.||+|+||.||++..    ++|..||+|++....   .....+.+.+|+.++.++ +|+||+++.+++..+...
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKL   80 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeE
Confidence            366778899999999999986    478999999986321   122356788999999999 599999999999888889


Q ss_pred             eEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ++||||+++|+|.+++......         .+++.||+|||+.++
T Consensus        81 ~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~~i  126 (290)
T cd05613          81 HLILDYINGGELFTHLSQRERFKEQEVQIYSGEIVLALEHLHKLGI  126 (290)
T ss_pred             EEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999999999999998754432         248899999999875

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.35  E-value=1.2e-12  Score=121.12  Aligned_cols=102  Identities=22%  Similarity=0.293  Sum_probs=84.9

Q ss_pred             cccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCCCh
Q 016905          279 IGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSV  355 (380)
Q Consensus       279 lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~GsL  355 (380)
                      ||+|+||+||++.. .+|+.+|+|.+....  .......+.+|++++.+++|||++++.+++...+..++||||+++|+|
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDL   80 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcH
Confidence            68999999999987 568999999985321  122355678899999999999999999999998999999999999999


Q ss_pred             hhhcccccc--c---------ceeeeeecceeeecC
Q 016905          356 AYRLRVSHK--I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       356 ~~~L~~~~~--~---------~~~~~aL~yLH~~~i  380 (380)
                      .++++....  .         .+++.||.|||+.+|
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~i  116 (277)
T cd05577          81 KYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRRI  116 (277)
T ss_pred             HHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999875442  1         348899999999875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.35  E-value=9.9e-13  Score=125.06  Aligned_cols=102  Identities=22%  Similarity=0.260  Sum_probs=81.8

Q ss_pred             cccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcC---cCCCCccceeeeeCCCceeEEeecccC
Q 016905          279 IGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVA---IHKNLLQLIGYCTTSSERILVYPFMQN  352 (380)
Q Consensus       279 lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l---~H~Niv~l~g~~~~~~~~~lV~Ey~~~  352 (380)
                      ||+|+||.||+|.. .+++.||||++....  .......+..|..++.+.   +||||+++++++..++..++||||+++
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~   80 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG   80 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence            69999999999998 568999999985321  112234456677777655   699999999999999999999999999


Q ss_pred             CChhhhccccccc---------ceeeeeecceeeecC
Q 016905          353 LSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       353 GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+|.+++......         .+++.||+|||+.+|
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qil~al~~LH~~~i  117 (330)
T cd05586          81 GELFWHLQKEGRFSEDRAKFYIAELVLALEHLHKYDI  117 (330)
T ss_pred             ChHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999988754432         358999999999875

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.35  E-value=1.3e-12  Score=122.20  Aligned_cols=112  Identities=22%  Similarity=0.294  Sum_probs=89.3

Q ss_pred             HHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCC----
Q 016905          268 LATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS----  341 (380)
Q Consensus       268 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~----  341 (380)
                      ...++|+..+.||+|+||.||+|.. .+++.||+|++.... .......+.+|++++.+++|||++++++++....    
T Consensus         4 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~   83 (302)
T cd07864           4 RCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALD   83 (302)
T ss_pred             hhhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhh
Confidence            3556788899999999999999998 468999999996322 2233467789999999999999999999987654    


Q ss_pred             ------ceeEEeecccCCChhhhcccccc-c---------ceeeeeecceeeecC
Q 016905          342 ------ERILVYPFMQNLSVAYRLRVSHK-I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       342 ------~~~lV~Ey~~~GsL~~~L~~~~~-~---------~~~~~aL~yLH~~~i  380 (380)
                            ..++|+||+++ ++.+.+..... .         .+++.||+|||+.+|
T Consensus        84 ~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i  137 (302)
T cd07864          84 FKKDKGAFYLVFEYMDH-DLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCHKKNF  137 (302)
T ss_pred             ccccCCcEEEEEcccCc-cHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence                  68999999986 77777664321 1         348899999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.35  E-value=1.1e-12  Score=122.44  Aligned_cols=109  Identities=19%  Similarity=0.344  Sum_probs=87.1

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC-CchHHHHHHHHHHHhcCc-CCCCccceeeeeCCCc-----
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS-PGGEAAFQREVHLISVAI-HKNLLQLIGYCTTSSE-----  342 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-~~~~~~f~~e~~~l~~l~-H~Niv~l~g~~~~~~~-----  342 (380)
                      ++|+..+.||+|+||.||+|.. .+++.||+|.+..... ......+.+|++++.+++ ||||+++++++...+.     
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~   80 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPS   80 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCce
Confidence            3677889999999999999998 5689999998863322 223467889999999995 6999999999877655     


Q ss_pred             eeEEeecccCCChhhhcccccc--------------cceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHK--------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~--------------~~~~~~aL~yLH~~~i  380 (380)
                      .++||||+++ +|.+++.....              ..+++.||+|||+++|
T Consensus        81 ~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i  131 (295)
T cd07837          81 LYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGV  131 (295)
T ss_pred             EEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            7999999985 89888764321              1338899999999875

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.35  E-value=6.5e-13  Score=123.16  Aligned_cols=107  Identities=21%  Similarity=0.351  Sum_probs=87.7

Q ss_pred             cccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      |+..+.||+|+||.||+|+. .+|+.+|+|++.... .......+.+|++++.+++||||+++++++...+..++|+||+
T Consensus         2 y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   81 (284)
T cd07839           2 YEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEYC   81 (284)
T ss_pred             ceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEecC
Confidence            66678899999999999998 568999999986322 2223466888999999999999999999999999999999999


Q ss_pred             cCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      + |+|.++++....          ..+++.||+|||+++|
T Consensus        82 ~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i  120 (284)
T cd07839          82 D-QDLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHSHNV  120 (284)
T ss_pred             C-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            7 588888764221          1349999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.34  E-value=1e-12  Score=121.83  Aligned_cols=118  Identities=20%  Similarity=0.304  Sum_probs=95.1

Q ss_pred             eCHHHHHHHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeee
Q 016905          261 FSCRELQLATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCT  338 (380)
Q Consensus       261 ~~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~  338 (380)
                      .++.++..+...|+..+.||+|+||.||+|.. .+++.+|+|.+...  .....++..|+.++.++ +|+||+++++++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~--~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~   83 (282)
T cd06636           6 IDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVT--EDEEEEIKLEINMLKKYSHHRNIATYYGAFI   83 (282)
T ss_pred             hhhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecC--hHHHHHHHHHHHHHHHhcCCCcEEEEeeehh
Confidence            35556666778888899999999999999998 56889999988432  22356788999999998 7999999999985


Q ss_pred             C------CCceeEEeecccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          339 T------SSERILVYPFMQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       339 ~------~~~~~lV~Ey~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      .      .+..+++|||+++|+|.+++...+.           ..+++.|++|||+.+|
T Consensus        84 ~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i  142 (282)
T cd06636          84 KKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAHKV  142 (282)
T ss_pred             cccccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            3      3567999999999999999865322           1348999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.34  E-value=1.4e-12  Score=120.95  Aligned_cols=107  Identities=22%  Similarity=0.389  Sum_probs=88.4

Q ss_pred             cccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      |+..+.||+|++|.||+|.. .+|..||+|++.... .....+.+.+|++.+.+++|||++++++++..++..+++|||+
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~   80 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFL   80 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEecc
Confidence            45567899999999999998 579999999986322 2223467889999999999999999999999999999999999


Q ss_pred             cCCChhhhccccc--cc---------ceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSH--KI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~--~~---------~~~~~aL~yLH~~~i  380 (380)
                      + ++|.+++....  ..         .+++.||+|||++++
T Consensus        81 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~~~  120 (283)
T cd07835          81 D-LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHRV  120 (283)
T ss_pred             C-cCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            5 69999987654  11         348899999999874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.34  E-value=1e-12  Score=123.67  Aligned_cols=109  Identities=25%  Similarity=0.269  Sum_probs=88.1

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ..|+..+.||+|+||.||+|.. .+++.||+|++....  .....+++.+|++++.+++|||++++.++|..++..++||
T Consensus        15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~   94 (307)
T cd06607          15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVM   94 (307)
T ss_pred             hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEH
Confidence            4477788999999999999998 468999999985321  2223467899999999999999999999999999999999


Q ss_pred             ecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      ||++ |++.+++.....          ..+++.||.|||+.+|
T Consensus        95 e~~~-g~l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH~~~i  136 (307)
T cd06607          95 EYCL-GSASDILEVHKKPLQEVEIAAICHGALQGLAYLHSHER  136 (307)
T ss_pred             HhhC-CCHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            9997 577777653221          1348899999999875

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.34  E-value=8.4e-13  Score=121.82  Aligned_cols=110  Identities=19%  Similarity=0.241  Sum_probs=92.5

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCc-CCCCccceeeeeCCCceeEE
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAI-HKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~-H~Niv~l~g~~~~~~~~~lV  346 (380)
                      ++|...+.||+|+||.||++.. .+++.+|+|++....  .....+.+.+|.+++.+++ ||||+++++++..++..++|
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv   80 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFV   80 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEE
Confidence            3677788999999999999998 478999999986321  2234567889999999998 99999999999999999999


Q ss_pred             eecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.+++......         .+++.||+|||+.++
T Consensus        81 ~e~~~~~~L~~~l~~~~~l~~~~~~~i~~ql~~~l~~Lh~~~~  123 (280)
T cd05581          81 LEYAPNGELLQYIRKYGSLDEKCTRFYAAEILLALEYLHSKGI  123 (280)
T ss_pred             EcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999999999999765332         348999999999874

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.34  E-value=1.2e-12  Score=122.16  Aligned_cols=109  Identities=18%  Similarity=0.276  Sum_probs=88.5

Q ss_pred             cCcccccccccCCCeeEEEEEeC-CCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCC--CceeEE
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS--SERILV  346 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~--~~~~lV  346 (380)
                      ++|+..+.||+|+||.||+|... +++.+|+|.++... .......+.+|+.++.+++||||+++++++...  +..++|
T Consensus         5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv   84 (293)
T cd07843           5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMV   84 (293)
T ss_pred             hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEE
Confidence            46777889999999999999984 68899999996322 222345678899999999999999999998876  789999


Q ss_pred             eecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      |||++ ++|.+++.....          ..+++.||+|||+.+|
T Consensus        85 ~e~~~-~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i  127 (293)
T cd07843          85 MEYVE-HDLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDNWI  127 (293)
T ss_pred             ehhcC-cCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            99997 599988865432          1348899999999875

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.34  E-value=1.1e-12  Score=124.71  Aligned_cols=115  Identities=18%  Similarity=0.274  Sum_probs=92.7

Q ss_pred             HHHHHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeC-CC
Q 016905          265 ELQLATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTT-SS  341 (380)
Q Consensus       265 ~l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~-~~  341 (380)
                      ++...+++|+..+.||+|+||.||++.. .+++.||+|++.... .....+.+.+|++++.+++||||+++.+++.. .+
T Consensus         4 ~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~   83 (328)
T cd07856           4 TVFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLE   83 (328)
T ss_pred             ceeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCC
Confidence            3445778899999999999999999987 578999999885322 22345678899999999999999999998865 55


Q ss_pred             ceeEEeecccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          342 ERILVYPFMQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       342 ~~~lV~Ey~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      ..++|+||+ +++|.++++....        ..+++.||+|||+++|
T Consensus        84 ~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~ql~~aL~~LH~~~i  129 (328)
T cd07856          84 DIYFVTELL-GTDLHRLLTSRPLEKQFIQYFLYQILRGLKYVHSAGV  129 (328)
T ss_pred             cEEEEeehh-ccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            788999999 5689988864321        2458899999999875

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.33  E-value=1e-12  Score=124.84  Aligned_cols=104  Identities=25%  Similarity=0.216  Sum_probs=85.8

Q ss_pred             cccccC--CCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccC
Q 016905          277 NIIGQG--GFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQN  352 (380)
Q Consensus       277 ~~lg~G--~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~  352 (380)
                      ..||+|  +||+||++.. .+|+.||+|.+.... .....+.+.+|+.++..++||||+++++++..++..++|+||+++
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~   83 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAY   83 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccC
Confidence            346666  8999999998 579999999986322 223357789999999999999999999999999999999999999


Q ss_pred             CChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          353 LSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       353 GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      |+|.++++....           ..+++.||+|||+.+|
T Consensus        84 ~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~i  122 (328)
T cd08226          84 GSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNGY  122 (328)
T ss_pred             CCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            999999875321           2348999999999875

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.33  E-value=2e-12  Score=118.08  Aligned_cols=106  Identities=25%  Similarity=0.339  Sum_probs=87.8

Q ss_pred             cCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeC-CCceeEEeec
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT-SSERILVYPF  349 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~-~~~~~lV~Ey  349 (380)
                      ++|+..++||+|+||.||++.. .|..+|+|.+...   ...+.|.+|+.++.+++|+|++++++++.. ++..++||||
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~-~~~~~~~k~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~   81 (256)
T cd05082           6 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND---ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY   81 (256)
T ss_pred             HhCeeeeeecccCCCeEEEEEE-cCCcEEEEEeCCC---chHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEEC
Confidence            4577788999999999999987 5788999988532   235679999999999999999999998654 4568999999


Q ss_pred             ccCCChhhhccccccc-----------ceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHKI-----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~~-----------~~~~~aL~yLH~~~i  380 (380)
                      +++|+|.++++.....           .+++.||+|||+.+|
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  123 (256)
T cd05082          82 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNF  123 (256)
T ss_pred             CCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            9999999998754321           348899999999874

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.33  E-value=2.7e-12  Score=116.58  Aligned_cols=109  Identities=25%  Similarity=0.386  Sum_probs=91.6

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC-CchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS-PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      +|+..+.||+|++|.||+++. .++..+++|.+..... ....+.+.+|++++.+++|||++++.+++..++..+++|||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEY   80 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEec
Confidence            356678999999999999988 4678999999964322 23467899999999999999999999999998999999999


Q ss_pred             ccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +++++|.+++......         .+++.+|.|||+.+|
T Consensus        81 ~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i  120 (254)
T cd06627          81 AENGSLRQIIKKFGPFPESLVAVYVYQVLQGLAYLHEQGV  120 (254)
T ss_pred             CCCCcHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhCCc
Confidence            9999999998754332         348899999999875

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.32  E-value=2.3e-12  Score=116.95  Aligned_cols=109  Identities=20%  Similarity=0.321  Sum_probs=91.6

Q ss_pred             CcccccccccCCCeeEEEEEeC-CCcEEEEEEecccCC-CchHHHHHHHHHHHhcCcCCCCccceeeeeCC--CceeEEe
Q 016905          272 NFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYYS-PGGEAAFQREVHLISVAIHKNLLQLIGYCTTS--SERILVY  347 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~~-~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~--~~~~lV~  347 (380)
                      +|+..+.||+|++|.||+|... +++.|++|++..... ....+.+.+|++.+++++||||+++++.+...  +..++|+
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~   80 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFL   80 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEE
Confidence            3666788999999999999985 689999999863321 23467899999999999999999999999887  7899999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++++|.+++......         .+++.+|+|||+.++
T Consensus        81 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~  122 (260)
T cd06606          81 EYVSGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLHSNGI  122 (260)
T ss_pred             EecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            999999999998765322         348899999998774

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.32  E-value=2.9e-12  Score=119.30  Aligned_cols=108  Identities=24%  Similarity=0.379  Sum_probs=82.4

Q ss_pred             CcccccccccCCCeeEEEEEe--CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcC---cCCCCccceeeeeC-----C
Q 016905          272 NFSESNIIGQGGFGKVYKGVL--SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVA---IHKNLLQLIGYCTT-----S  340 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~--~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l---~H~Niv~l~g~~~~-----~  340 (380)
                      +|+..+.||+|+||.||+|..  .+++.||+|++.... .......+.+|+.++..+   +||||++++++|..     .
T Consensus         2 ~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~   81 (290)
T cd07862           2 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRE   81 (290)
T ss_pred             CcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCC
Confidence            577788999999999999987  346889999986322 222345667787777665   69999999999852     3


Q ss_pred             CceeEEeecccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          341 SERILVYPFMQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       341 ~~~~lV~Ey~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      ...++||||++ |+|.+++.....           ..+++.||+|||+.+|
T Consensus        82 ~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~i  131 (290)
T cd07862          82 TKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRV  131 (290)
T ss_pred             CcEEEEEccCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            45889999996 699998864321           1348999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.32  E-value=2.6e-12  Score=118.84  Aligned_cols=107  Identities=21%  Similarity=0.309  Sum_probs=85.3

Q ss_pred             cccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCc-CCCCccceeeeeCC--CceeEEee
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI-HKNLLQLIGYCTTS--SERILVYP  348 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~-H~Niv~l~g~~~~~--~~~~lV~E  348 (380)
                      |+..+.||+|+||.||+|.. .+++.+|+|++.............+|+..+.++. |+|++++++++..+  +..++|+|
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e   80 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFE   80 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEe
Confidence            44567899999999999997 5689999999864333333345568999999985 99999999999887  88999999


Q ss_pred             cccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      |++ |+|.+++......          .+++.||+|||+.+|
T Consensus        81 ~~~-~~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i  121 (282)
T cd07831          81 LMD-MNLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMHRNGI  121 (282)
T ss_pred             cCC-ccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            997 6888888753221          338899999999875

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.32  E-value=1.3e-12  Score=137.17  Aligned_cols=112  Identities=15%  Similarity=0.204  Sum_probs=90.5

Q ss_pred             HHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcCcCCCCccceeeeeC--CCce
Q 016905          268 LATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT--SSER  343 (380)
Q Consensus       268 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~--~~~~  343 (380)
                      ...++|...+.||+|+||.||++.. .++..+|+|.+... ........|..|+.++.+++|||||++++++..  .+..
T Consensus        10 ~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~l   89 (1021)
T PTZ00266         10 SRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKL   89 (1021)
T ss_pred             cccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEE
Confidence            3456788899999999999999998 55789999998632 233346779999999999999999999998754  3568


Q ss_pred             eEEeecccCCChhhhccccc----c---------cceeeeeecceeeec
Q 016905          344 ILVYPFMQNLSVAYRLRVSH----K---------IYTKIISLSSLHCFS  379 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~----~---------~~~~~~aL~yLH~~~  379 (380)
                      +|||||+++|+|.++|+...    .         ..+++.||+|||+.+
T Consensus        90 yIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g  138 (1021)
T PTZ00266         90 YILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLK  138 (1021)
T ss_pred             EEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence            89999999999999986421    1         135889999999843

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.31  E-value=2e-12  Score=120.88  Aligned_cols=104  Identities=20%  Similarity=0.232  Sum_probs=87.7

Q ss_pred             ccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCCC
Q 016905          276 SNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLS  354 (380)
Q Consensus       276 ~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~Gs  354 (380)
                      ..+||+|+||.||++.. .++..||||++... .....+.+.+|+.++++++|+|++++++++...+..++||||+++++
T Consensus        25 ~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~  103 (292)
T cd06657          25 FIKIGEGSTGIVCIATVKSSGKLVAVKKMDLR-KQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGA  103 (292)
T ss_pred             HHHcCCCCCeEEEEEEEcCCCeEEEEEEeccc-chhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCCc
Confidence            35699999999999988 57899999998532 33346679999999999999999999999999999999999999999


Q ss_pred             hhhhccccc--------ccceeeeeecceeeecC
Q 016905          355 VAYRLRVSH--------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       355 L~~~L~~~~--------~~~~~~~aL~yLH~~~i  380 (380)
                      |.+++....        ...+++.+++|||+.+|
T Consensus       104 L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~gi  137 (292)
T cd06657         104 LTDIVTHTRMNEEQIAAVCLAVLKALSVLHAQGV  137 (292)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            999875432        12448999999999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.31  E-value=4.2e-13  Score=132.04  Aligned_cols=104  Identities=25%  Similarity=0.312  Sum_probs=87.4

Q ss_pred             cccccccCCCeeEEEEEe--CCCc--EEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          275 ESNIIGQGGFGKVYKGVL--SDNT--KVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       275 ~~~~lg~G~~g~Vy~~~~--~~g~--~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      ..+.||+|+||.|++|.|  +.|+  .||||.++.........+|.+|+.+|.+++|||+++|+|+..+ ...+||+|.+
T Consensus       114 l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~-qp~mMV~ELa  192 (1039)
T KOG0199|consen  114 LYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLD-QPAMMVFELA  192 (1039)
T ss_pred             HHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeecc-chhhHHhhhc
Confidence            357899999999999999  4454  6899999755444478899999999999999999999999987 6788999999


Q ss_pred             cCCChhhhcccccc-----------cceeeeeecceeeec
Q 016905          351 QNLSVAYRLRVSHK-----------IYTKIISLSSLHCFS  379 (380)
Q Consensus       351 ~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~  379 (380)
                      +.|||.+.|++...           ..+++.|+.||-+++
T Consensus       193 plGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLeskr  232 (1039)
T KOG0199|consen  193 PLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESKR  232 (1039)
T ss_pred             ccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999997222           245888999987654

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.31  E-value=1.5e-12  Score=118.91  Aligned_cols=102  Identities=17%  Similarity=0.204  Sum_probs=86.2

Q ss_pred             cccCCCeeEEEEEeC-CCcEEEEEEecccCC--CchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCCCh
Q 016905          279 IGQGGFGKVYKGVLS-DNTKVAVKRLQDYYS--PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSV  355 (380)
Q Consensus       279 lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~~--~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~GsL  355 (380)
                      ||+|+||.||+++.. +|+.+++|.+.....  ....+.+.+|++++.+++||||+++++.+..++..++||||+++|+|
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDL   80 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcH
Confidence            689999999999985 489999999863221  23467789999999999999999999999999999999999999999


Q ss_pred             hhhccccccc---------ceeeeeecceeeecC
Q 016905          356 AYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       356 ~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      .++++.....         .+++.||+|||+.+|
T Consensus        81 ~~~l~~~~~~~~~~~~~i~~qi~~~L~~lH~~~i  114 (265)
T cd05579          81 ASLLENVGSLDEDVARIYIAEIVLALEYLHSNGI  114 (265)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCe
Confidence            9999764332         348999999998875

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.31  E-value=1.5e-12  Score=120.56  Aligned_cols=107  Identities=21%  Similarity=0.336  Sum_probs=87.8

Q ss_pred             cccccccccCCCeeEEEEEeC-CCcEEEEEEecccCCCchHHHHHHHHHHHhcCc-CCCCccceeeeeCCCceeEEeecc
Q 016905          273 FSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI-HKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~-H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      |+..+.||+|++|.||+|+.. +++.|+||++.............+|+..+.+++ |+|++++++++..++..++||||+
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~   80 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM   80 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC
Confidence            455788999999999999984 578999999864333223445567999999999 999999999999999999999999


Q ss_pred             cCCChhhhccccc--cc---------ceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSH--KI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~--~~---------~~~~~aL~yLH~~~i  380 (380)
                       +|+|.++++...  ..         .+++.+|.|||+.+|
T Consensus        81 -~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i  120 (283)
T cd07830          81 -EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHGF  120 (283)
T ss_pred             -CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence             889999987654  11         348999999999875

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.31  E-value=1.9e-12  Score=118.04  Aligned_cols=105  Identities=27%  Similarity=0.362  Sum_probs=86.9

Q ss_pred             cCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      .+|+..+.||+|+||.||++.. +++.+|+|.+...   ...+.|.+|+.++.+++|||++++.+++... ..++||||+
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~---~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~v~e~~   80 (254)
T cd05083           6 QKLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCD---VTAQAFLEETAVMTKLHHKNLVRLLGVILHN-GLYIVMELM   80 (254)
T ss_pred             HHceeeeeeccCCCCceEeccc-CCCceEEEeecCc---chHHHHHHHHHHHHhCCCCCcCeEEEEEcCC-CcEEEEECC
Confidence            3467788999999999999985 7788999998532   2356799999999999999999999998654 578999999


Q ss_pred             cCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      ++|+|.++++....           ..+++.||+|||+.++
T Consensus        81 ~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~  121 (254)
T cd05083          81 SKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKL  121 (254)
T ss_pred             CCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            99999999975432           1248899999999874

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.31  E-value=1.6e-12  Score=118.24  Aligned_cols=109  Identities=19%  Similarity=0.242  Sum_probs=90.4

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      +|+..+.||+|+||.||++.. .+++.+|+|.+.... ......++.+|++++++++|+||+++.+++......++||||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEY   80 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehh
Confidence            366788999999999999987 568899999986322 233466788999999999999999999999998999999999


Q ss_pred             ccCCChhhhccccc----cc---------ceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSH----KI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~----~~---------~~~~~aL~yLH~~~i  380 (380)
                      +++++|.+++....    ..         .+++.||+|||+.++
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~~i  124 (256)
T cd08530          81 APFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQKI  124 (256)
T ss_pred             cCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCc
Confidence            99999999986521    11         248899999999875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.31  E-value=2.5e-12  Score=123.81  Aligned_cols=111  Identities=22%  Similarity=0.311  Sum_probs=88.1

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCC-----
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS-----  341 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~-----  341 (380)
                      ..++|+..+.||+|+||.||++.. .+|..||||++... ......+.+.+|+.++..++||||+++++++...+     
T Consensus        19 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   98 (359)
T cd07876          19 VLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEF   98 (359)
T ss_pred             hhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCcccc
Confidence            456788899999999999999987 56899999999632 22334567889999999999999999999986543     


Q ss_pred             -ceeEEeecccCCChhhhccccc-------ccceeeeeecceeeecC
Q 016905          342 -ERILVYPFMQNLSVAYRLRVSH-------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       342 -~~~lV~Ey~~~GsL~~~L~~~~-------~~~~~~~aL~yLH~~~i  380 (380)
                       ..++||||+++ +|.+.++..-       ...+++.||+|||+.+|
T Consensus        99 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i  144 (359)
T cd07876          99 QDVYLVMELMDA-NLCQVIHMELDHERMSYLLYQMLCGIKHLHSAGI  144 (359)
T ss_pred             ceeEEEEeCCCc-CHHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence             46899999975 6766664321       12459999999999886

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.31  E-value=2.9e-12  Score=116.87  Aligned_cols=109  Identities=18%  Similarity=0.234  Sum_probs=88.1

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCC-CceeEEee
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS-SERILVYP  348 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~-~~~~lV~E  348 (380)
                      +|+..+.||+|++|.||++.. .+++.+|+|++.... .....+.+.+|++++++++|+|++++.+.+... ...++|||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e   80 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMG   80 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEec
Confidence            467788999999999999998 457899999986322 233456789999999999999999999887644 45789999


Q ss_pred             cccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.++++....           ..+++.+++|||+++|
T Consensus        81 ~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~~i  123 (257)
T cd08223          81 FCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKHI  123 (257)
T ss_pred             ccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999999999875321           1348899999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.31  E-value=8.8e-13  Score=129.66  Aligned_cols=103  Identities=19%  Similarity=0.302  Sum_probs=87.7

Q ss_pred             cccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCCCh
Q 016905          277 NIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSV  355 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~GsL  355 (380)
                      -+||+|.||+||.|+. .+...+|||.+.+. ..+..+-...|+.+-++++|+|||+++|.|.+++..-+.||-+|+|||
T Consensus       581 vVLGKGTYG~VYA~RD~~tqvrIaIKEIpek-dsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSL  659 (1226)
T KOG4279|consen  581 VVLGKGTYGTVYAARDMDTQVRIAIKEIPEK-DSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSL  659 (1226)
T ss_pred             EEeecCceeEEEeeccccceeEEEeeecccc-cchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcH
Confidence            3799999999999998 44568999999653 334567788999999999999999999999999999999999999999


Q ss_pred             hhhcccc-ccc-----------ceeeeeecceeeecC
Q 016905          356 AYRLRVS-HKI-----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       356 ~~~L~~~-~~~-----------~~~~~aL~yLH~~~i  380 (380)
                      .++|+.+ ++.           .++++||.|||+..|
T Consensus       660 SsLLrskWGPlKDNEstm~fYtkQILeGLkYLHen~I  696 (1226)
T KOG4279|consen  660 SSLLRSKWGPLKDNESTMNFYTKQILEGLKYLHENKI  696 (1226)
T ss_pred             HHHHHhccCCCccchhHHHHHHHHHHHHhhhhhhcce
Confidence            9999843 332           459999999998765

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.30  E-value=3.5e-12  Score=118.74  Aligned_cols=107  Identities=20%  Similarity=0.221  Sum_probs=89.3

Q ss_pred             cccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeeccc
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQ  351 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~  351 (380)
                      |...+.||+|++|.||++.. .+++.+++|++... .....+.+.+|+.++.+++|||++++++++...+..++|+||++
T Consensus        21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~-~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~   99 (285)
T cd06648          21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLR-KQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLE   99 (285)
T ss_pred             hhcceEeccCCCeEEEEEEECCCCCEEEEEEEecc-chhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccC
Confidence            44457899999999999997 56889999988532 23345678899999999999999999999999999999999999


Q ss_pred             CCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          352 NLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       352 ~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      +++|.+++.....        ..+++.|++|||+++|
T Consensus       100 ~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~i  136 (285)
T cd06648         100 GGALTDIVTHTRMNEEQIATVCLAVLKALSFLHAQGV  136 (285)
T ss_pred             CCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999999876321        2348899999999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.30  E-value=3.2e-12  Score=117.74  Aligned_cols=108  Identities=27%  Similarity=0.361  Sum_probs=84.0

Q ss_pred             cccccccccCCCeeEEEEEeC----CCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCC------
Q 016905          273 FSESNIIGQGGFGKVYKGVLS----DNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS------  341 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~~----~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~------  341 (380)
                      |...++||+|+||.||+|.+.    ++..||||++.... .....+++.+|++++++++||||+++++++...+      
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   80 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLP   80 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCccc
Confidence            445678999999999999862    36789999986432 2334667899999999999999999999886532      


Q ss_pred             ceeEEeecccCCChhhhccccc---------------ccceeeeeecceeeecC
Q 016905          342 ERILVYPFMQNLSVAYRLRVSH---------------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       342 ~~~lV~Ey~~~GsL~~~L~~~~---------------~~~~~~~aL~yLH~~~i  380 (380)
                      ..++++||+++|+|.+++....               ...+++.||+|||+.+|
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i  134 (273)
T cd05074          81 IPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKNF  134 (273)
T ss_pred             ceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            2478999999999998874221               11348899999999875

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.30  E-value=3.7e-12  Score=116.33  Aligned_cols=105  Identities=17%  Similarity=0.251  Sum_probs=84.9

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcCcCCCCccceeeeeC--CCceeEEe
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT--SSERILVY  347 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~--~~~~~lV~  347 (380)
                      +|+..+.||+|+||.||++.. .++..+|+|.+... ......+.+.+|++++++++||||+++++++..  +...+++|
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVM   80 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEe
Confidence            366678899999999999987 56889999998632 233345678999999999999999999998764  34578999


Q ss_pred             ecccCCChhhhccccc----c---------cceeeeeeccee
Q 016905          348 PFMQNLSVAYRLRVSH----K---------IYTKIISLSSLH  376 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~----~---------~~~~~~aL~yLH  376 (380)
                      ||+++|+|.+++....    .         ..+++.||+|||
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH  122 (265)
T cd08217          81 EYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECH  122 (265)
T ss_pred             hhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHh
Confidence            9999999999986431    1         134889999999

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.30  E-value=1.6e-12  Score=129.26  Aligned_cols=92  Identities=21%  Similarity=0.376  Sum_probs=69.7

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-----------------CCCcEEEEEEecccCCCchH--------------HHHHH
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-----------------SDNTKVAVKRLQDYYSPGGE--------------AAFQR  317 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-----------------~~g~~vavK~l~~~~~~~~~--------------~~f~~  317 (380)
                      ..++|+..++||+|+||.||+|.+                 .+++.||||++.... ....              +.+..
T Consensus       143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~-~~~~~~fl~e~~~~~~~~e~~~v  221 (507)
T PLN03224        143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDR-QGVRQDFLKTGTLAKGSAETGMV  221 (507)
T ss_pred             cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccc-hhhHHHHHhhhhhhhcccchhHH
Confidence            467899999999999999999964                 235689999985321 1112              23445


Q ss_pred             HHHHHhcCcCCCC-----ccceeeeeC--------CCceeEEeecccCCChhhhccc
Q 016905          318 EVHLISVAIHKNL-----LQLIGYCTT--------SSERILVYPFMQNLSVAYRLRV  361 (380)
Q Consensus       318 e~~~l~~l~H~Ni-----v~l~g~~~~--------~~~~~lV~Ey~~~GsL~~~L~~  361 (380)
                      |+..+.+++|.++     ++++|||..        +++.+||||||++|+|.++|+.
T Consensus       222 E~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~  278 (507)
T PLN03224        222 EAYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDG  278 (507)
T ss_pred             HHHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhh
Confidence            7777888877665     678888753        3568999999999999999974

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.30  E-value=3.8e-12  Score=117.89  Aligned_cols=107  Identities=23%  Similarity=0.360  Sum_probs=87.9

Q ss_pred             cccccccccCCCeeEEEEEeC-CCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCC--CceeEEee
Q 016905          273 FSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS--SERILVYP  348 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~--~~~~lV~E  348 (380)
                      |+..+.||+|+||.||+|+.. +++.+|+|++.... .....+.+.+|++++.+++|+|++++++++...  +..++|||
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e   80 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFE   80 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEec
Confidence            455678999999999999984 58899999997432 233456789999999999999999999999887  78999999


Q ss_pred             cccCCChhhhccccc-cc---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSH-KI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~-~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+++ +|.+++.... ..         .+++.||+|||++++
T Consensus        81 ~~~~-~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~~  121 (287)
T cd07840          81 YMDH-DLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSNGI  121 (287)
T ss_pred             cccc-cHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            9985 8998886542 11         348899999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.29  E-value=8e-13  Score=126.05  Aligned_cols=109  Identities=17%  Similarity=0.188  Sum_probs=91.5

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      -|+..+.||+|.|+.|-.|++ -+|..||||++.+. .+.-....+.+|++.|.-++|||||+|+.+...+...|||+|.
T Consensus        19 LYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLEL   98 (864)
T KOG4717|consen   19 LYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILEL   98 (864)
T ss_pred             eehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEEe
Confidence            356678899999999998887 58999999999632 2333456678999999999999999999999999999999999


Q ss_pred             ccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      =.+|+|++||-++..          ..+|+.|+.|||+..+
T Consensus        99 GD~GDl~DyImKHe~Gl~E~La~kYF~QI~~AI~YCHqLHV  139 (864)
T KOG4717|consen   99 GDGGDLFDYIMKHEEGLNEDLAKKYFAQIVHAISYCHQLHV  139 (864)
T ss_pred             cCCchHHHHHHhhhccccHHHHHHHHHHHHHHHHHHhhhhh
Confidence            999999999965433          3569999999998753

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.29  E-value=2.3e-12  Score=127.52  Aligned_cols=106  Identities=25%  Similarity=0.376  Sum_probs=82.1

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCC-------
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS-------  340 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~-------  340 (380)
                      ...+|+..++||+|+||.||+|+. .+++.||||++...     .....+|+.++.+++|||||++++++...       
T Consensus        64 ~~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~-----~~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~  138 (440)
T PTZ00036         64 PNKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQD-----PQYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEK  138 (440)
T ss_pred             cCCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecC-----cchHHHHHHHHHhcCCCCCcceeeeEeecccccCCC
Confidence            345788899999999999999998 56889999988432     22345799999999999999999876432       


Q ss_pred             -CceeEEeecccCCChhhhcccc----cc---------cceeeeeecceeeecC
Q 016905          341 -SERILVYPFMQNLSVAYRLRVS----HK---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       341 -~~~~lV~Ey~~~GsL~~~L~~~----~~---------~~~~~~aL~yLH~~~i  380 (380)
                       ...++||||+++ +|.+++...    ..         ..+++.||+|||+++|
T Consensus       139 ~~~l~lvmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~I  191 (440)
T PTZ00036        139 NIFLNVVMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKFI  191 (440)
T ss_pred             ceEEEEEEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence             135689999985 777766421    11         1358999999999875

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.29  E-value=4.5e-12  Score=115.17  Aligned_cols=109  Identities=18%  Similarity=0.265  Sum_probs=91.6

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      +|+..+.||+|+||.||++.. .++..+++|++.... .....+.+.+|++++.+++|+|++++.+.+...+..++|+||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~   80 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEY   80 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEe
Confidence            466778899999999999998 468899999996322 224567789999999999999999999999988999999999


Q ss_pred             ccCCChhhhccccc----c---------cceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSH----K---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~----~---------~~~~~~aL~yLH~~~i  380 (380)
                      +++++|.++++...    .         ..+++.||+|||+.++
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~  124 (258)
T cd08215          81 ADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKI  124 (258)
T ss_pred             cCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            99999999997642    1         1348999999998774

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.29  E-value=2.6e-12  Score=122.76  Aligned_cols=111  Identities=23%  Similarity=0.342  Sum_probs=87.9

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCC------
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS------  340 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~------  340 (380)
                      ..+.|+..+.||+|+||.||+|.. .++..||||++.... .....+.+.+|++++.+++||||+++++++...      
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07878          13 VPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIENF   92 (343)
T ss_pred             hhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccccccc
Confidence            456788889999999999999997 568899999986322 222346678999999999999999999887542      


Q ss_pred             CceeEEeecccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          341 SERILVYPFMQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       341 ~~~~lV~Ey~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      ...++++||+ +++|.++++....        ..+++.||+|||+++|
T Consensus        93 ~~~~~~~~~~-~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i  139 (343)
T cd07878          93 NEVYLVTNLM-GADLNNIVKCQKLSDEHVQFLIYQLLRGLKYIHSAGI  139 (343)
T ss_pred             CcEEEEeecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            3468999998 7799988764321        2458999999999875

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.28  E-value=3.2e-12  Score=126.75  Aligned_cols=102  Identities=18%  Similarity=0.160  Sum_probs=85.5

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      .+|...+.||+|+||.||++.. ..++.||||...       ...+.+|++++.+++|+|||++++++..++..++||||
T Consensus       169 ~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~-------~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~  241 (461)
T PHA03211        169 LGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW-------YASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPK  241 (461)
T ss_pred             CCeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc-------ccCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEc
Confidence            3588889999999999999998 457899999642       23467899999999999999999999999999999999


Q ss_pred             ccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      +. |+|.+++.....          ..+++.||+|||++||
T Consensus       242 ~~-~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gI  281 (461)
T PHA03211        242 YR-SDLYTYLGARLRPLGLAQVTAVARQLLSAIDYIHGEGI  281 (461)
T ss_pred             cC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            95 799988864321          2348899999999885

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.28  E-value=5.1e-12  Score=118.52  Aligned_cols=110  Identities=25%  Similarity=0.369  Sum_probs=86.9

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCc-----
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSE-----  342 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~-----  342 (380)
                      .++|+..+.||+|+||.||+|.. .+++.||||++.... .......+.+|++++++++||||++++++|...+.     
T Consensus        11 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   90 (310)
T cd07865          11 VSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRY   90 (310)
T ss_pred             hhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCC
Confidence            45688889999999999999998 568999999986322 22234556789999999999999999999876543     


Q ss_pred             ---eeEEeecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          343 ---RILVYPFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ---~~lV~Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                         .++||||+++ +|.+++.....          ..+++.||+|||+.+|
T Consensus        91 ~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i  140 (310)
T cd07865          91 KGSFYLVFEFCEH-DLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIHRNKI  140 (310)
T ss_pred             CceEEEEEcCCCc-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence               4999999974 88888765421          1349999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.28  E-value=3.8e-12  Score=121.35  Aligned_cols=110  Identities=18%  Similarity=0.350  Sum_probs=88.8

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCC-----ce
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS-----ER  343 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~-----~~  343 (380)
                      .++|+..+.||+|+||.||+|+. .+|+.||+|++...........+.+|+.++.+++||||+++++++...+     ..
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   83 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDV   83 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceE
Confidence            46788899999999999999987 5789999999864333334567889999999999999999999876543     47


Q ss_pred             eEEeecccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      ++|+||+++ +|.++++...-        ..+++.||+|||+.+|
T Consensus        84 ~lv~e~~~~-~l~~~~~~~~l~~~~~~~i~~ql~~aL~~LH~~~i  127 (336)
T cd07849          84 YIVQELMET-DLYKLIKTQHLSNDHIQYFLYQILRGLKYIHSANV  127 (336)
T ss_pred             EEEehhccc-CHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            999999975 88888764321        2358899999999875

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.28  E-value=4.7e-12  Score=120.58  Aligned_cols=104  Identities=19%  Similarity=0.238  Sum_probs=84.8

Q ss_pred             ccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCc-------------hHHHHHHHHHHHhcCcCCCCccceeeeeCCC
Q 016905          276 SNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPG-------------GEAAFQREVHLISVAIHKNLLQLIGYCTTSS  341 (380)
Q Consensus       276 ~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~-------------~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~  341 (380)
                      .+.||+|+||.||+|.. .+++.||||.+.......             ....+.+|++++.+++|+||+++++++...+
T Consensus        14 ~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   93 (335)
T PTZ00024         14 GAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVEGD   93 (335)
T ss_pred             hhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEecCC
Confidence            46799999999999997 468999999986322111             1235789999999999999999999999999


Q ss_pred             ceeEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          342 ERILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       342 ~~~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ..++||||++ |+|.+++......         .+++.||+|||+++|
T Consensus        94 ~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~~i  140 (335)
T PTZ00024         94 FINLVMDIMA-SDLKKVVDRKIRLTESQVKCILLQILNGLNVLHKWYF  140 (335)
T ss_pred             cEEEEEeccc-cCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999999997 6999998654322         348999999999875

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.28  E-value=5.4e-12  Score=119.29  Aligned_cols=107  Identities=25%  Similarity=0.300  Sum_probs=86.6

Q ss_pred             cccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      |+..+.||+|+||.||+++. .++..+|+|++....  .....+.+.+|++++++++|||++++++++..++..++||||
T Consensus        27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  106 (317)
T cd06635          27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEY  106 (317)
T ss_pred             hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEeC
Confidence            55678899999999999997 568899999986321  222346788999999999999999999999999999999999


Q ss_pred             ccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      ++ |+|.+.+.....          ..+++.|+.|||+.+|
T Consensus       107 ~~-g~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~i  146 (317)
T cd06635         107 CL-GSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNM  146 (317)
T ss_pred             CC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            97 588877753221          1348899999999875

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.28  E-value=5.4e-12  Score=120.78  Aligned_cols=111  Identities=23%  Similarity=0.394  Sum_probs=88.6

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCC-----
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS-----  341 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~-----  341 (380)
                      ..++|+..+.||+|+||.||++.. .++..||||++.... .....+.+.+|++++.+++||||+++++++....     
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07880          13 VPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRF   92 (343)
T ss_pred             cccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccccc
Confidence            456788899999999999999987 578999999985322 2223456889999999999999999999887543     


Q ss_pred             -ceeEEeecccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          342 -ERILVYPFMQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       342 -~~~lV~Ey~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                       ..++||||+ +++|.+++.....        ..+++.||+|||+.||
T Consensus        93 ~~~~lv~e~~-~~~l~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~gi  139 (343)
T cd07880          93 HDFYLVMPFM-GTDLGKLMKHEKLSEDRIQFLVYQMLKGLKYIHAAGI  139 (343)
T ss_pred             ceEEEEEecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence             358999999 6799888764221        2348899999999875

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.27  E-value=6.1e-12  Score=118.36  Aligned_cols=110  Identities=23%  Similarity=0.284  Sum_probs=87.5

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC-CchHHHHHHHHHHHhcCcCCCCccceeeeeCC--CceeE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS-PGGEAAFQREVHLISVAIHKNLLQLIGYCTTS--SERIL  345 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~--~~~~l  345 (380)
                      .++|+..+.||+|+||.||+|.. .+|+.||+|++..... ......+.+|+.++.+++|+||+++++++...  +..++
T Consensus         6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (309)
T cd07845           6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFL   85 (309)
T ss_pred             ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEE
Confidence            46788899999999999999998 5689999999863222 22234567899999999999999999998754  46899


Q ss_pred             EeecccCCChhhhccccc----------ccceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSH----------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~----------~~~~~~~aL~yLH~~~i  380 (380)
                      ||||+++ +|.+++....          ...+++.||+|||+.+|
T Consensus        86 v~e~~~~-~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i  129 (309)
T cd07845          86 VMEYCEQ-DLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHENFI  129 (309)
T ss_pred             EEecCCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999974 8888876432          12448999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.27  E-value=3.4e-12  Score=122.83  Aligned_cols=105  Identities=15%  Similarity=0.179  Sum_probs=86.5

Q ss_pred             HHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          268 LATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       268 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      ....+|+..+.||+|+||.||+|.. .++..||+|....       .....|+.++.+++||||+++++++...+..++|
T Consensus        63 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~-------~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  135 (357)
T PHA03209         63 VASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQK-------GTTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMV  135 (357)
T ss_pred             hhhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCc-------cccHHHHHHHHhCCCCCCcChhheEEeCCeeEEE
Confidence            3445799999999999999999998 4577999997532       1235699999999999999999999999999999


Q ss_pred             eecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      +||+. |+|.+++......          .+++.||+|||+++|
T Consensus       136 ~e~~~-~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i  178 (357)
T PHA03209        136 LPHYS-SDLYTYLTKRSRPLPIDQALIIEKQILEGLRYLHAQRI  178 (357)
T ss_pred             EEccC-CcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            99995 6899988643221          348999999999875

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.27  E-value=9.4e-12  Score=112.49  Aligned_cols=107  Identities=23%  Similarity=0.342  Sum_probs=91.1

Q ss_pred             cccccccccCCCeeEEEEEeC-CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeeccc
Q 016905          273 FSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQ  351 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~  351 (380)
                      |+..+.||+|++|.||++... ++..+++|++..... ...+.+.+|++.+.+++|+|++++++++..++..++++||++
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~   80 (253)
T cd05122           2 FEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESK-EKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCS   80 (253)
T ss_pred             ceeeeeeccCCceEEEEEEECCCCcEEEEEEecccch-hHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCC
Confidence            566788999999999999984 688999999964322 356789999999999999999999999999999999999999


Q ss_pred             CCChhhhccccc-c---------cceeeeeecceeeecC
Q 016905          352 NLSVAYRLRVSH-K---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       352 ~GsL~~~L~~~~-~---------~~~~~~aL~yLH~~~i  380 (380)
                      +++|.+++.... .         ..+++.|++|||+.++
T Consensus        81 ~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~i  119 (253)
T cd05122          81 GGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSNGI  119 (253)
T ss_pred             CCcHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCE
Confidence            999999987652 2         1348899999999774

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.27  E-value=4.7e-12  Score=121.24  Aligned_cols=119  Identities=20%  Similarity=0.305  Sum_probs=94.0

Q ss_pred             eCHHHHHHHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeee
Q 016905          261 FSCRELQLATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCT  338 (380)
Q Consensus       261 ~~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~  338 (380)
                      ....++...+++|+..+.||+|+||.||++.. .+++.||+|++.... .....+.+.+|++++.+++||||+++.+++.
T Consensus         7 ~~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~   86 (345)
T cd07877           7 ELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFT   86 (345)
T ss_pred             hHHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeee
Confidence            44566777889999999999999999999987 578999999986322 2223567889999999999999999999886


Q ss_pred             CC------CceeEEeecccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          339 TS------SERILVYPFMQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       339 ~~------~~~~lV~Ey~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      ..      ...++++|++ +++|.+++.....        ..+++.||+|||+.+|
T Consensus        87 ~~~~~~~~~~~~lv~~~~-~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i  141 (345)
T cd07877          87 PARSLEEFNDVYLVTHLM-GADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADI  141 (345)
T ss_pred             ecccccccccEEEEehhc-ccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            43      3467888887 7899888764321        2458899999999875

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.27  E-value=4.1e-12  Score=118.17  Aligned_cols=109  Identities=17%  Similarity=0.227  Sum_probs=88.6

Q ss_pred             CcccccccccCCCeeEEEEEe----CCCcEEEEEEecccC---CCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCce
Q 016905          272 NFSESNIIGQGGFGKVYKGVL----SDNTKVAVKRLQDYY---SPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSER  343 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~----~~g~~vavK~l~~~~---~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~  343 (380)
                      +|+..+.||+|++|.||++..    .+++.+|||.+....   .....+.+.+|++++.++ +||||+++.+.+..++..
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~   80 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKL   80 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEE
Confidence            356678899999999999985    357899999985321   122356788999999999 699999999999888889


Q ss_pred             eEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ++||||+++|+|.+++......         .+++.+|+|||+.++
T Consensus        81 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~~  126 (288)
T cd05583          81 HLILDYVNGGELFTHLYQREHFTESEVRVYIAEIVLALDHLHQLGI  126 (288)
T ss_pred             EEEEecCCCCcHHHHHhhcCCcCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999999999999998754322         258899999998764

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.26  E-value=7.4e-12  Score=116.18  Aligned_cols=103  Identities=22%  Similarity=0.261  Sum_probs=79.6

Q ss_pred             ccccCCCeeEEEEEe-CCCcEEEEEEecccCC--CchHHHHHHHHHHHh---cCcCCCCccceeeeeCCCceeEEeeccc
Q 016905          278 IIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS--PGGEAAFQREVHLIS---VAIHKNLLQLIGYCTTSSERILVYPFMQ  351 (380)
Q Consensus       278 ~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~f~~e~~~l~---~l~H~Niv~l~g~~~~~~~~~lV~Ey~~  351 (380)
                      +||+|+||.||++.. .+++.+|+|.+.....  ......+.+|..++.   ..+|||++.+.+++..++..++||||++
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN   80 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence            489999999999998 5689999998864321  122334455544333   4479999999999998889999999999


Q ss_pred             CCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          352 NLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       352 ~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +|+|.++++.+...         .+++.||+|||+.+|
T Consensus        81 ~~~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~~i  118 (279)
T cd05633          81 GGDLHYHLSQHGVFSEKEMRFYATEIILGLEHMHNRFV  118 (279)
T ss_pred             CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            99999998755432         348899999999875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.26  E-value=4.9e-12  Score=120.51  Aligned_cols=110  Identities=17%  Similarity=0.323  Sum_probs=89.0

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC-CchHHHHHHHHHHHhcCcCCCCccceeeeeC----CCce
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS-PGGEAAFQREVHLISVAIHKNLLQLIGYCTT----SSER  343 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~----~~~~  343 (380)
                      .++|+..+.||+|+||.||++.. .+|..||+|++..... ....+.+.+|+.++.+++||||+++.+++..    ....
T Consensus         4 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   83 (334)
T cd07855           4 GSRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDV   83 (334)
T ss_pred             hhceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceE
Confidence            36788889999999999999998 5699999999864322 2345677889999999999999999998753    3457


Q ss_pred             eEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ++||||+. |+|.++++.....         .+++.||+|||+.+|
T Consensus        84 ~lv~e~~~-~~l~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i  128 (334)
T cd07855          84 YVVMDLME-SDLHHIIHSDQPLTEEHIRYFLYQLLRGLKYIHSANV  128 (334)
T ss_pred             EEEEehhh-hhHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            99999996 6999998755443         348999999999875

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.26  E-value=3.7e-12  Score=117.02  Aligned_cols=110  Identities=19%  Similarity=0.323  Sum_probs=90.0

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcCcCCCCccceeeeeC-----CCc
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT-----SSE  342 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~-----~~~  342 (380)
                      ...|...+.||+|+||.|.+++. .+|+.||||++... ......+.-.+|+.++..++|+||+.+......     -+.
T Consensus        21 ~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~D  100 (359)
T KOG0660|consen   21 PRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFND  100 (359)
T ss_pred             cceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccce
Confidence            34455567899999999999998 67999999999632 233346777899999999999999999998865     356


Q ss_pred             eeEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      .|+|+|+|+- +|.+.|+.....         .|++.||.|+|+.+|
T Consensus       101 vYiV~elMet-DL~~iik~~~~L~d~H~q~f~YQiLrgLKyiHSAnV  146 (359)
T KOG0660|consen  101 VYLVFELMET-DLHQIIKSQQDLTDDHAQYFLYQILRGLKYIHSANV  146 (359)
T ss_pred             eEEehhHHhh-HHHHHHHcCccccHHHHHHHHHHHHHhcchhhcccc
Confidence            8999999965 999999876532         459999999999875

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.26  E-value=7.4e-12  Score=120.76  Aligned_cols=111  Identities=20%  Similarity=0.320  Sum_probs=87.9

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCC------
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS------  340 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~------  340 (380)
                      ..++|+..+.||+|+||.||++.. ..++.||||++.... .....+.+.+|+.++..++||||+++++++...      
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~  101 (364)
T cd07875          22 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF  101 (364)
T ss_pred             hhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeeccccccccc
Confidence            456788899999999999999997 568899999996422 233456788999999999999999999987643      


Q ss_pred             CceeEEeecccCCChhhhccccc-------ccceeeeeecceeeecC
Q 016905          341 SERILVYPFMQNLSVAYRLRVSH-------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       341 ~~~~lV~Ey~~~GsL~~~L~~~~-------~~~~~~~aL~yLH~~~i  380 (380)
                      ...++||||+++ +|.+++...-       ...+++.||+|||+.+|
T Consensus       102 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i  147 (364)
T cd07875         102 QDVYIVMELMDA-NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGI  147 (364)
T ss_pred             CeEEEEEeCCCC-CHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhCCe
Confidence            346999999975 7777765321       12458899999999875

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.26  E-value=3.4e-12  Score=116.74  Aligned_cols=108  Identities=14%  Similarity=0.247  Sum_probs=84.3

Q ss_pred             cccccccccCCCeeEEEEEeC-CCcEEEEEEeccc----CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          273 FSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDY----YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~----~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      |...+.||+|+||.||++... .+..+++|.++..    ........+..|+.++.+++||||+++++++...+..++||
T Consensus         2 y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   81 (260)
T cd08222           2 YILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCIIT   81 (260)
T ss_pred             ceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEEE
Confidence            566788999999999999873 3445666655421    12233456778999999999999999999999888999999


Q ss_pred             ecccCCChhhhcccccc-------------cceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHK-------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~-------------~~~~~~aL~yLH~~~i  380 (380)
                      ||+++++|.++++....             ..+++.||+|||+++|
T Consensus        82 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i  127 (260)
T cd08222          82 EYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRRI  127 (260)
T ss_pred             EeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcCc
Confidence            99999999998864211             1348899999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.25  E-value=4.3e-12  Score=117.88  Aligned_cols=108  Identities=24%  Similarity=0.334  Sum_probs=82.4

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC-CchHHHHHHHHHHHhcC---cCCCCccceeeeeC-----CC
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS-PGGEAAFQREVHLISVA---IHKNLLQLIGYCTT-----SS  341 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-~~~~~~f~~e~~~l~~l---~H~Niv~l~g~~~~-----~~  341 (380)
                      .|+..+.||+|+||.||+|.. .+++.||+|.+..... ......+.+|++++.++   +||||+++++++..     ..
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~   80 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRET   80 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCc
Confidence            366778899999999999998 5689999999864322 22234566787777665   69999999998864     23


Q ss_pred             ceeEEeecccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          342 ERILVYPFMQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       342 ~~~lV~Ey~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      ..++||||++ ++|.++++....           ..+++.||+|||++||
T Consensus        81 ~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i  129 (288)
T cd07863          81 KVTLVFEHVD-QDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANCI  129 (288)
T ss_pred             eEEEEEcccc-cCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            4789999998 489888865322           1348899999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.25  E-value=6.1e-12  Score=118.75  Aligned_cols=101  Identities=20%  Similarity=0.349  Sum_probs=79.8

Q ss_pred             ccccccCCCeeEEEEEeC---CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeC--CCceeEEeecc
Q 016905          276 SNIIGQGGFGKVYKGVLS---DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT--SSERILVYPFM  350 (380)
Q Consensus       276 ~~~lg~G~~g~Vy~~~~~---~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~--~~~~~lV~Ey~  350 (380)
                      .++||+|+||.||+|...   +++.+|+|.+...   .....+.+|++++.+++||||+++++++..  +...++||||+
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~---~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~   82 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGT---GISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYA   82 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCC---CCcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEecc
Confidence            468999999999999863   4678999998532   224567899999999999999999998854  45578999999


Q ss_pred             cCCChhhhccccc------------------ccceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSH------------------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~------------------~~~~~~~aL~yLH~~~i  380 (380)
                      .+ +|.+++....                  ...+++.||+|||+.||
T Consensus        83 ~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~i  129 (317)
T cd07868          83 EH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWV  129 (317)
T ss_pred             CC-CHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            64 8888764211                  12458999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.25  E-value=6.1e-12  Score=120.89  Aligned_cols=111  Identities=21%  Similarity=0.333  Sum_probs=87.9

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCC------
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS------  340 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~------  340 (380)
                      ..++|+..+.||+|+||.||++.. ..++.||||++.... .....+.+.+|+.++..++||||+++++++...      
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   94 (355)
T cd07874          15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEF   94 (355)
T ss_pred             hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeecccccccc
Confidence            456888899999999999999987 468899999996432 233456788999999999999999999988643      


Q ss_pred             CceeEEeecccCCChhhhccccc-------ccceeeeeecceeeecC
Q 016905          341 SERILVYPFMQNLSVAYRLRVSH-------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       341 ~~~~lV~Ey~~~GsL~~~L~~~~-------~~~~~~~aL~yLH~~~i  380 (380)
                      ...++||||+++ ++.++++..-       ...+++.||+|||+.||
T Consensus        95 ~~~~lv~e~~~~-~l~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~gi  140 (355)
T cd07874          95 QDVYLVMELMDA-NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGI  140 (355)
T ss_pred             ceeEEEhhhhcc-cHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            246899999975 6777665321       22458999999999875

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.25  E-value=9.3e-12  Score=113.86  Aligned_cols=104  Identities=16%  Similarity=0.189  Sum_probs=81.1

Q ss_pred             cccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHH-hcCcCCCCccceeeeeCCCceeEEeecccC
Q 016905          277 NIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLI-SVAIHKNLLQLIGYCTTSSERILVYPFMQN  352 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l-~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~  352 (380)
                      +.||+|+||.||+|.. .+++.||+|.+....  .......+..|..++ ...+|+|++++++++..++..++||||+++
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   81 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG   81 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence            4589999999999998 568899999985321  112233455555544 455899999999999999999999999999


Q ss_pred             CChhhhccccccc---------ceeeeeecceeeecC
Q 016905          353 LSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       353 GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+|.++++.....         .+++.||.|||+.+|
T Consensus        82 ~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~i  118 (260)
T cd05611          82 GDCASLIKTLGGLPEDWAKQYIAEVVLGVEDLHQRGI  118 (260)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999999754332         348899999999875

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.25  E-value=5.2e-12  Score=119.01  Aligned_cols=103  Identities=21%  Similarity=0.151  Sum_probs=82.5

Q ss_pred             cccccCCCeeEEEEEeCCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCCCh
Q 016905          277 NIIGQGGFGKVYKGVLSDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSV  355 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~GsL  355 (380)
                      +.+|.|+++.||++.. +++.||||++... ......+.+.+|++++++++|+||+++++++...+..+++|||+++|+|
T Consensus         8 ~~~~~~~~v~~~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l   86 (314)
T cd08216           8 KCFEDLMIVHLAKHKP-TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGSC   86 (314)
T ss_pred             HhhcCCceEEEEEecC-CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCCH
Confidence            3345555656666554 7999999998643 2344567899999999999999999999999999999999999999999


Q ss_pred             hhhcccccc-----------cceeeeeecceeeecC
Q 016905          356 AYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       356 ~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      .++++....           ..+++.||+|||+++|
T Consensus        87 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~i  122 (314)
T cd08216          87 EDLLKTHFPEGLPELAIAFILKDVLNALDYIHSKGF  122 (314)
T ss_pred             HHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            999875321           1348999999999875

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.24  E-value=7.1e-12  Score=119.49  Aligned_cols=111  Identities=19%  Similarity=0.344  Sum_probs=88.0

Q ss_pred             HhcCcccccccccCCCeeEEEEEeC-CCcEEEEEEeccc-CCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCC--Cce
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDY-YSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTS--SER  343 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~--~~~  343 (380)
                      ..++|+..+.||+|+||.||+|... +++.+|+|++... ........+.+|+.++.++ +||||+++++++...  ...
T Consensus         5 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~   84 (337)
T cd07852           5 ILRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDI   84 (337)
T ss_pred             hhhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceE
Confidence            3456777889999999999999984 6889999988532 1223345678899999999 999999999998653  357


Q ss_pred             eEEeecccCCChhhhccccc--------ccceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSH--------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~--------~~~~~~~aL~yLH~~~i  380 (380)
                      ++||||++ ++|.++++...        ...+++.||+|||+++|
T Consensus        85 ~lv~e~~~-~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~i  128 (337)
T cd07852          85 YLVFEYME-TDLHAVIRANILEDVHKRYIMYQLLKALKYIHSGNV  128 (337)
T ss_pred             EEEecccc-cCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            99999997 59999886541        12348899999999875

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.24  E-value=1.2e-11  Score=116.30  Aligned_cols=107  Identities=19%  Similarity=0.347  Sum_probs=85.3

Q ss_pred             cccccccccCCCeeEEEEEeC---CCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCC--CceeE
Q 016905          273 FSESNIIGQGGFGKVYKGVLS---DNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS--SERIL  345 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~~---~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~--~~~~l  345 (380)
                      |+..+.||+|+||.||+|...   ++..+|+|.+....  .....+.+.+|+.++.+++||||+++++++...  +..++
T Consensus         2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   81 (316)
T cd07842           2 YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVYL   81 (316)
T ss_pred             ceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEEE
Confidence            566788999999999999983   57899999996421  122356778999999999999999999999887  77999


Q ss_pred             EeecccCCChhhhccccc--------------ccceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSH--------------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~--------------~~~~~~~aL~yLH~~~i  380 (380)
                      ||||+++ +|.+++....              ...+++.||+|||+++|
T Consensus        82 v~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i  129 (316)
T cd07842          82 LFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNWV  129 (316)
T ss_pred             EEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            9999975 6777664221              11348899999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.24  E-value=1.4e-11  Score=116.28  Aligned_cols=107  Identities=25%  Similarity=0.296  Sum_probs=86.1

Q ss_pred             cccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      |...+.||+|+||.||+|+. .++..+++|++....  .....+.+.+|++++.+++|||++++.+++...+..++||||
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  102 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEY  102 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEec
Confidence            44457799999999999997 568899999986322  222346788999999999999999999999999999999999


Q ss_pred             ccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      +. |++.+++.....          ..+++.|++|||+.||
T Consensus       103 ~~-~~l~~~l~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi  142 (313)
T cd06633         103 CL-GSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNM  142 (313)
T ss_pred             CC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            96 588877754321          1348899999999875

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.24  E-value=1.2e-11  Score=113.72  Aligned_cols=106  Identities=17%  Similarity=0.259  Sum_probs=84.1

Q ss_pred             CcccccccccCCCeeEEEEEeCC--CcEEEEEEeccc---------CCCchHHHHHHHHHHHhc-CcCCCCccceeeeeC
Q 016905          272 NFSESNIIGQGGFGKVYKGVLSD--NTKVAVKRLQDY---------YSPGGEAAFQREVHLISV-AIHKNLLQLIGYCTT  339 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~~~--g~~vavK~l~~~---------~~~~~~~~f~~e~~~l~~-l~H~Niv~l~g~~~~  339 (380)
                      +|+..+.||+|+||.||++....  ++.+|+|.+...         .......++.+|+.++.+ ++||||+++++++..
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            46677889999999999999844  689999988521         112234567889988875 799999999999999


Q ss_pred             CCceeEEeecccCCChhhhcccc---cc----------cceeeeeecceee
Q 016905          340 SSERILVYPFMQNLSVAYRLRVS---HK----------IYTKIISLSSLHC  377 (380)
Q Consensus       340 ~~~~~lV~Ey~~~GsL~~~L~~~---~~----------~~~~~~aL~yLH~  377 (380)
                      ++..++||||+++++|.+++...   ..          ..+++.+|.|||+
T Consensus        81 ~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~  131 (269)
T cd08528          81 NDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHK  131 (269)
T ss_pred             CCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999887431   11          1248889999995

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.23  E-value=9.1e-12  Score=118.84  Aligned_cols=110  Identities=21%  Similarity=0.377  Sum_probs=88.1

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCC-----Cc
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS-----SE  342 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~-----~~  342 (380)
                      .+.|...+.||+|+||.||++.. .++..||||.+.... .....+.+.+|+.++..++|+||+++++++...     ..
T Consensus         4 ~~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~   83 (337)
T cd07858           4 DTKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFND   83 (337)
T ss_pred             ccceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCc
Confidence            34678889999999999999997 568999999986422 223356678899999999999999999988654     34


Q ss_pred             eeEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      .++||||+. ++|.+++......         .+++.||.|||+++|
T Consensus        84 ~~lv~e~~~-~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i  129 (337)
T cd07858          84 VYIVYELMD-TDLHQIIRSSQTLSDDHCQYFLYQLLRGLKYIHSANV  129 (337)
T ss_pred             EEEEEeCCC-CCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            799999996 6899888654332         358999999999874

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.22  E-value=1.2e-12  Score=128.41  Aligned_cols=110  Identities=18%  Similarity=0.253  Sum_probs=94.0

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      +.++|+....+|.|.||.|||++. ..++..|||.++-. .....+-.++|+-++...+|||||.++|.+...+..|+.|
T Consensus        13 P~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLe-p~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicM   91 (829)
T KOG0576|consen   13 PQDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLE-PGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICM   91 (829)
T ss_pred             CccchhheeeecCCcccchhhhcccccCchhhheeeecc-CCccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEE
Confidence            455677778899999999999998 66899999999622 2234556778999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeec
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFS  379 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~  379 (380)
                      ||+.+|+|++..|.....         ++.+.++.|||++|
T Consensus        92 EycgggslQdiy~~TgplselqiayvcRetl~gl~ylhs~g  132 (829)
T KOG0576|consen   92 EYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLKYLHSQG  132 (829)
T ss_pred             EecCCCcccceeeecccchhHHHHHHHhhhhccchhhhcCC
Confidence            999999999998865554         55999999999998

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.22  E-value=1.7e-11  Score=117.29  Aligned_cols=109  Identities=23%  Similarity=0.394  Sum_probs=85.8

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCC------c
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS------E  342 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~------~  342 (380)
                      ++|...+.||+|+||.||+|+. .+|+.||||++.... .......+.+|++++.+++||||+++++++....      .
T Consensus        15 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   94 (342)
T cd07879          15 ERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQD   94 (342)
T ss_pred             cceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCce
Confidence            6788889999999999999997 568999999986322 2223466889999999999999999999986542      4


Q ss_pred             eeEEeecccCCChhhhccccc-------ccceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSH-------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~-------~~~~~~~aL~yLH~~~i  380 (380)
                      .++|+||+.. +|.+++...-       ...+++.||+|||+++|
T Consensus        95 ~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i  138 (342)
T cd07879          95 FYLVMPYMQT-DLQKIMGHPLSEDKVQYLVYQMLCGLKYIHSAGI  138 (342)
T ss_pred             EEEEeccccc-CHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            6899999974 7777653211       12458899999999875

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.22  E-value=1.1e-11  Score=112.46  Aligned_cols=102  Identities=20%  Similarity=0.202  Sum_probs=85.7

Q ss_pred             cccCCCeeEEEEEeC-CCcEEEEEEecccCC--CchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCCCh
Q 016905          279 IGQGGFGKVYKGVLS-DNTKVAVKRLQDYYS--PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSV  355 (380)
Q Consensus       279 lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~~--~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~GsL  355 (380)
                      ||+|+||.||++... +++.+|+|.+.....  ......+..|++++.+++||||+++++.+..++..++||||+++++|
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   80 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGEL   80 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcH
Confidence            699999999999984 588999999864322  22456789999999999999999999999999999999999999999


Q ss_pred             hhhccccccc---------ceeeeeecceeeecC
Q 016905          356 AYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       356 ~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      .+++......         .+++.|+.|||+.++
T Consensus        81 ~~~l~~~~~l~~~~~~~~~~qi~~~l~~lh~~~~  114 (250)
T cd05123          81 FSHLSKEGRFSEERARFYAAEIVLALEYLHSLGI  114 (250)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            9998755332         238899999998764

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.22  E-value=1.6e-11  Score=115.65  Aligned_cols=107  Identities=26%  Similarity=0.321  Sum_probs=86.0

Q ss_pred             cccccccccCCCeeEEEEEe-CCCcEEEEEEeccc--CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY--YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~--~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      |+..+.||+|+||.||+|+. .++..+|+|.+...  ......+++.+|++++++++|+|++++.+++...+..++||||
T Consensus        17 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   96 (308)
T cd06634          17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEY   96 (308)
T ss_pred             HHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEEc
Confidence            55567899999999999998 56889999998532  1223346788999999999999999999999999999999999


Q ss_pred             ccCCChhhhcccccc-c---------ceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHK-I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~-~---------~~~~~aL~yLH~~~i  380 (380)
                      +. |++.+++..... .         .+++.|+.|||+.++
T Consensus        97 ~~-~~l~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i  136 (308)
T cd06634          97 CL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNM  136 (308)
T ss_pred             cC-CCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            96 688887753222 1         237899999998774

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.21  E-value=1e-11  Score=117.84  Aligned_cols=108  Identities=21%  Similarity=0.373  Sum_probs=89.2

Q ss_pred             CcccccccccCCCeeEEEEEeC-CCcEEEEEEecccCC-CchHHHHHHHHHHHhcCcCCCCccceeeeeCCC-----cee
Q 016905          272 NFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYYS-PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS-----ERI  344 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~~-~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~-----~~~  344 (380)
                      +|+..+.||+|++|.||++... ++..+|+|++..... ....+.+.+|++++..++|+||+++.+++...+     ..+
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVY   80 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceE
Confidence            3667889999999999999984 589999999864322 334678999999999999999999999988765     789


Q ss_pred             EEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +||||++ ++|.++++.....         .+++.||+|||++||
T Consensus        81 lv~e~~~-~~l~~~l~~~~~l~~~~~~~i~~~l~~~l~~LH~~gi  124 (330)
T cd07834          81 IVTELME-TDLHKVIKSPQPLTDDHIQYFLYQILRGLKYLHSANV  124 (330)
T ss_pred             EEecchh-hhHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999998 5899988764322         348999999999875

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.21  E-value=1.1e-11  Score=116.88  Aligned_cols=101  Identities=20%  Similarity=0.347  Sum_probs=79.1

Q ss_pred             ccccccCCCeeEEEEEeC---CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeC--CCceeEEeecc
Q 016905          276 SNIIGQGGFGKVYKGVLS---DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT--SSERILVYPFM  350 (380)
Q Consensus       276 ~~~lg~G~~g~Vy~~~~~---~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~--~~~~~lV~Ey~  350 (380)
                      ..+||+|+||.||+|+..   ++..+|+|.+...   .....+.+|++++.+++||||+++++++..  +...++||||+
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~---~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~   82 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGT---GISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYA   82 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCC---CCcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeee
Confidence            467999999999999974   4578999998532   224568899999999999999999998854  45678999999


Q ss_pred             cCCChhhhccccc------------------ccceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSH------------------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~------------------~~~~~~~aL~yLH~~~i  380 (380)
                      ++ +|.+++....                  ...+++.||+|||+.+|
T Consensus        83 ~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~i  129 (317)
T cd07867          83 EH-DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANWV  129 (317)
T ss_pred             CC-cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            75 7877764211                  12358899999999875

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.21  E-value=1.5e-11  Score=115.32  Aligned_cols=110  Identities=21%  Similarity=0.325  Sum_probs=86.4

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC-CchHHHHHHHHHHHhcCcCCCCccceeeeeCCC------
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS-PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS------  341 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~------  341 (380)
                      .++|+..+.||+|+||.||+|.. .+++.+|+|++..... ......+.+|++++.+++||||+++++++....      
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   86 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK   86 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence            46788899999999999999998 5688999999863322 223456789999999999999999999875433      


Q ss_pred             --ceeEEeecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          342 --ERILVYPFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       342 --~~~lV~Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                        ..++|+||++. ++.+.+.....          ..++++||+|||+++|
T Consensus        87 ~~~~~lv~~~~~~-~l~~~~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i  136 (311)
T cd07866          87 RGSVYMVTPYMDH-DLSGLLENPSVKLTESQIKCYMLQLLEGINYLHENHI  136 (311)
T ss_pred             CceEEEEEecCCc-CHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence              36999999975 77777664321          1348899999999875

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.21  E-value=1.3e-11  Score=120.44  Aligned_cols=104  Identities=18%  Similarity=0.211  Sum_probs=85.5

Q ss_pred             hcCcccccccccCCCeeEEEEEeC---CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLS---DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~---~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      ...|...+.||+|+||.||++...   .+..||+|.+...      +.+.+|++++.+++|||||++++++...+..++|
T Consensus        91 ~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~------~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv  164 (392)
T PHA03207         91 RMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG------KTPGREIDILKTISHRAIINLIHAYRWKSTVCMV  164 (392)
T ss_pred             cCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc------ccHHHHHHHHHhcCCCCccceeeeEeeCCEEEEE
Confidence            346888899999999999999762   3578999988431      3456899999999999999999999988899999


Q ss_pred             eecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |||+. ++|.+++......         .+++.||+|||+++|
T Consensus       165 ~e~~~-~~l~~~l~~~~~l~~~~~~~i~~ql~~aL~~LH~~gi  206 (392)
T PHA03207        165 MPKYK-CDLFTYVDRSGPLPLEQAITIQRRLLEALAYLHGRGI  206 (392)
T ss_pred             ehhcC-CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            99996 6899888543322         348999999999886

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.21  E-value=1.2e-12  Score=136.52  Aligned_cols=112  Identities=22%  Similarity=0.254  Sum_probs=95.1

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecc-cCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQD-YYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~-~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      .+-+++....||.|.||.||.|+. ++|...|||.+.- .......+...+|+.++..+.|||+|+++|+-..++..+|.
T Consensus      1233 V~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IF 1312 (1509)
T KOG4645|consen 1233 VTFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIF 1312 (1509)
T ss_pred             ceeeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHHH
Confidence            344567788999999999999997 6799999998862 22333456778999999999999999999999999999999


Q ss_pred             eecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||||++|+|.+.+...+..         .+++.|++|||+.||
T Consensus      1313 MEyC~~GsLa~ll~~gri~dE~vt~vyt~qll~gla~LH~~gI 1355 (1509)
T KOG4645|consen 1313 MEYCEGGSLASLLEHGRIEDEMVTRVYTKQLLEGLAYLHEHGI 1355 (1509)
T ss_pred             HHHhccCcHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHhcCc
Confidence            9999999999999765443         348999999999987

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.20  E-value=1.1e-11  Score=114.67  Aligned_cols=107  Identities=21%  Similarity=0.365  Sum_probs=88.5

Q ss_pred             cccccccccCCCeeEEEEEeC-CCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          273 FSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      |+..+.||+|.+|.||+|+.. +++.+|+|.+.... .....+.+..|++++.+++|+|++++++++...+..++||||+
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~   80 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYC   80 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCc
Confidence            345678999999999999984 58999999996432 2333567889999999999999999999999999999999999


Q ss_pred             cCCChhhhccccc-cc---------ceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSH-KI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~-~~---------~~~~~aL~yLH~~~i  380 (380)
                      + ++|.++++... ..         .+++.||+|||+.+|
T Consensus        81 ~-~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i  119 (282)
T cd07829          81 D-MDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSHRI  119 (282)
T ss_pred             C-cCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            8 59999997652 21         348899999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.20  E-value=1.6e-11  Score=117.49  Aligned_cols=108  Identities=21%  Similarity=0.309  Sum_probs=86.9

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCC---------
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS---------  340 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~---------  340 (380)
                      .+|+..+.||+|+||.||+|.. .++..||+|++... .....+.+.+|++++.+++||||+++++++...         
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~-~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   83 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLT-DPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVG   83 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecC-CCchHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccccc
Confidence            4677889999999999999998 56899999998543 234467789999999999999999999876543         


Q ss_pred             -----CceeEEeecccCCChhhhccccc--------ccceeeeeecceeeecC
Q 016905          341 -----SERILVYPFMQNLSVAYRLRVSH--------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       341 -----~~~~lV~Ey~~~GsL~~~L~~~~--------~~~~~~~aL~yLH~~~i  380 (380)
                           ...++||||++ ++|.+++....        ...+++.||+|||+.||
T Consensus        84 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~gi  135 (342)
T cd07854          84 SLTELNSVYIVQEYME-TDLANVLEQGPLSEEHARLFMYQLLRGLKYIHSANV  135 (342)
T ss_pred             cccccceEEEEeeccc-ccHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence                 34789999997 58988875422        12459999999999875

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.19  E-value=3.2e-11  Score=111.15  Aligned_cols=110  Identities=19%  Similarity=0.169  Sum_probs=81.6

Q ss_pred             HHHHHhcCccccccc--ccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhc-CcCCCCccceeeeeCC
Q 016905          265 ELQLATDNFSESNII--GQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISV-AIHKNLLQLIGYCTTS  340 (380)
Q Consensus       265 ~l~~~~~~~~~~~~l--g~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~-l~H~Niv~l~g~~~~~  340 (380)
                      +.....++|+..+.+  |+|+||.||++.. .++..+|+|.+......    ..  |+..... .+|||++++++++..+
T Consensus         8 ~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~----~~--e~~~~~~~~~h~~iv~~~~~~~~~   81 (267)
T PHA03390          8 ELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFN----AI--EPMVHQLMKDNPNFIKLYYSVTTL   81 (267)
T ss_pred             HHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcc----hh--hHHHHHHhhcCCCEEEEEEEEecC
Confidence            333344556665665  9999999999997 56889999998532111    11  2222211 2699999999999999


Q ss_pred             CceeEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          341 SERILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       341 ~~~~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +..++||||+++|+|.++++.....         .+++.||+|||+++|
T Consensus        82 ~~~~iv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i  130 (267)
T PHA03390         82 KGHVLIMDYIKDGDLFDLLKKEGKLSEAEVKKIIRQLVEALNDLHKHNI  130 (267)
T ss_pred             CeeEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999999999999999999765332         348899999999875

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.19  E-value=2.5e-11  Score=112.57  Aligned_cols=103  Identities=23%  Similarity=0.259  Sum_probs=78.9

Q ss_pred             ccccCCCeeEEEEEe-CCCcEEEEEEecccCCC--chHHHHHHHHH---HHhcCcCCCCccceeeeeCCCceeEEeeccc
Q 016905          278 IIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSP--GGEAAFQREVH---LISVAIHKNLLQLIGYCTTSSERILVYPFMQ  351 (380)
Q Consensus       278 ~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--~~~~~f~~e~~---~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~  351 (380)
                      +||+|+||.||++.. .+++.||+|.+......  .....+..|..   .+....||||+++.+++...+..++||||++
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN   80 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence            489999999999987 56889999998643211  12233444443   3445679999999999999999999999999


Q ss_pred             CCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          352 NLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       352 ~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +|+|.+++......         .+++.|++|||+.+|
T Consensus        81 g~~L~~~l~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i  118 (278)
T cd05606          81 GGDLHYHLSQHGVFSEAEMRFYAAEIILGLEHMHNRFV  118 (278)
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            99999988654332         348889999998774

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.19  E-value=3.5e-11  Score=106.93  Aligned_cols=108  Identities=24%  Similarity=0.354  Sum_probs=90.4

Q ss_pred             cccccccccCCCeeEEEEEeCC-CcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeeccc
Q 016905          273 FSESNIIGQGGFGKVYKGVLSD-NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQ  351 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~~~-g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~  351 (380)
                      |+..+.||+|++|.||++...+ ++.+|+|.+.........+.+.+|++.+.+++|+|++++++++...+..++++||++
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCE   80 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccC
Confidence            3456789999999999999954 889999999643222256789999999999999999999999999899999999999


Q ss_pred             CCChhhhcccccc-c---------ceeeeeecceeeecC
Q 016905          352 NLSVAYRLRVSHK-I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       352 ~GsL~~~L~~~~~-~---------~~~~~aL~yLH~~~i  380 (380)
                      +++|.+++..... .         .+++.++.|||+.++
T Consensus        81 ~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i  119 (225)
T smart00221       81 GGDLFDYLRKKGGKLSEEEARFYLRQILEALEYLHSLGI  119 (225)
T ss_pred             CCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999999976543 1         338889999998764

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.18  E-value=3e-11  Score=116.00  Aligned_cols=111  Identities=21%  Similarity=0.323  Sum_probs=88.5

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCC------
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS------  340 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~------  340 (380)
                      ..+.|+..+.||+|+||.||++.. .+++.||+|.+... ......+.+.+|+.++.+++||||+++++++...      
T Consensus        14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   93 (353)
T cd07850          14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEF   93 (353)
T ss_pred             hhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcccc
Confidence            456788899999999999999998 57899999998532 2233456788999999999999999999988643      


Q ss_pred             CceeEEeecccCCChhhhcccccc-------cceeeeeecceeeecC
Q 016905          341 SERILVYPFMQNLSVAYRLRVSHK-------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       341 ~~~~lV~Ey~~~GsL~~~L~~~~~-------~~~~~~aL~yLH~~~i  380 (380)
                      ...++||||+. |+|.+.+...-.       ..+++.||+|||+.||
T Consensus        94 ~~~~lv~e~~~-~~l~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~gi  139 (353)
T cd07850          94 QDVYLVMELMD-ANLCQVIQMDLDHERMSYLLYQMLCGIKHLHSAGI  139 (353)
T ss_pred             CcEEEEEeccC-CCHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            24699999996 588888754311       2458899999999875

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.17  E-value=1.4e-11  Score=124.66  Aligned_cols=109  Identities=19%  Similarity=0.348  Sum_probs=87.6

Q ss_pred             hcCcccccccccCCCeeEEEEEeCCC-cEEEEEEecccCCCchHHHHHHHHHHHhcCc-CCCCcccee-eeeC---C---
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLSDN-TKVAVKRLQDYYSPGGEAAFQREVHLISVAI-HKNLLQLIG-YCTT---S---  340 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~~g-~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~-H~Niv~l~g-~~~~---~---  340 (380)
                      ..+.+..++|.+|||+.||.+....+ ..+|+|++--. ++...+...+||++|+.++ |+|||.+++ ....   .   
T Consensus        36 ~~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~-de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~  114 (738)
T KOG1989|consen   36 SHRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVN-DEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGV  114 (738)
T ss_pred             CEEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecC-CHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCce
Confidence            44556688999999999999999555 99999999543 5667888999999999997 999999999 3322   1   


Q ss_pred             CceeEEeecccCCChhhhcccccc-----------cceeeeeecceeeec
Q 016905          341 SERILVYPFMQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFS  379 (380)
Q Consensus       341 ~~~~lV~Ey~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~  379 (380)
                      -+.+|.||||++|+|-|++..+..           ..++++|+++||...
T Consensus       115 ~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~~  164 (738)
T KOG1989|consen  115 WEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYLK  164 (738)
T ss_pred             eEEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcCC
Confidence            357899999999999999874322           234889999999753

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.17  E-value=2.7e-11  Score=112.03  Aligned_cols=107  Identities=22%  Similarity=0.401  Sum_probs=87.9

Q ss_pred             cccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC-CchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS-PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      |+..+.||+|++|.||++.. .+++.+++|++..... ......+.+|++++.+++|+||+++++++..++..++||||+
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   80 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFM   80 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEecc
Confidence            34567899999999999998 4688999999864322 234567889999999999999999999999999999999999


Q ss_pred             cCCChhhhccccc-c---------cceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSH-K---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~-~---------~~~~~~aL~yLH~~~i  380 (380)
                      ++ +|.+++.... .         ..+++.||.|||+.+|
T Consensus        81 ~~-~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i  119 (283)
T cd05118          81 DT-DLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHGI  119 (283)
T ss_pred             CC-CHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            75 8988887642 2         1348999999999875

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.17  E-value=6.4e-12  Score=122.73  Aligned_cols=104  Identities=18%  Similarity=0.279  Sum_probs=85.2

Q ss_pred             cccccccCCCeeEEEEEe-CCCcEEEEEEec---ccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCc--eeEEee
Q 016905          275 ESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQ---DYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSE--RILVYP  348 (380)
Q Consensus       275 ~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~---~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~--~~lV~E  348 (380)
                      ..++||+|+|-+||||.. .+|..||--.++   -..+....+.|..|+++|+.++|||||+++.++.+...  .-+|+|
T Consensus        44 ~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTE  123 (632)
T KOG0584|consen   44 FDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITE  123 (632)
T ss_pred             hhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeee
Confidence            357899999999999998 557788765443   12234456899999999999999999999999887554  678999


Q ss_pred             cccCCChhhhccccccc---------ceeeeeecceeee
Q 016905          349 FMQNLSVAYRLRVSHKI---------YTKIISLSSLHCF  378 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~  378 (380)
                      .|..|+|..|+.+.+..         ++|+.||.|||+.
T Consensus       124 L~TSGtLr~Y~kk~~~vn~kaik~W~RQILkGL~yLHs~  162 (632)
T KOG0584|consen  124 LFTSGTLREYRKKHRRVNIKAIKSWCRQILKGLVYLHSQ  162 (632)
T ss_pred             cccCCcHHHHHHHhccCCHHHHHHHHHHHHHHhhhhhcC
Confidence            99999999999865443         6799999999985

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.17  E-value=1.9e-11  Score=116.95  Aligned_cols=111  Identities=23%  Similarity=0.363  Sum_probs=89.2

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCc----
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSE----  342 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~----  342 (380)
                      ..++|+..+.||+|++|.||+|.. .+++.||||++.... .....+.+.+|+.++++++|||++++.+++...+.    
T Consensus        13 ~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07851          13 VPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDF   92 (343)
T ss_pred             ccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhcccccccc
Confidence            456788889999999999999998 468899999985321 22334667889999999999999999998876554    


Q ss_pred             --eeEEeecccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          343 --RILVYPFMQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       343 --~~lV~Ey~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                        .++|+||+ +++|.+++.....        ..+++.||+|||++||
T Consensus        93 ~~~~lv~e~~-~~~L~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~gi  139 (343)
T cd07851          93 QDVYLVTHLM-GADLNNIVKCQKLSDDHIQFLVYQILRGLKYIHSAGI  139 (343)
T ss_pred             ccEEEEEecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence              89999999 5699998865321        1348999999999875

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.16  E-value=1.6e-12  Score=126.76  Aligned_cols=108  Identities=19%  Similarity=0.262  Sum_probs=87.5

Q ss_pred             CcccccccccCCCeeEEEEEeC-CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          272 NFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      .|.....||.|+||.||||+.. ++-..|-|.+. ..+....++|+-||++|+.++||+||+|++.|...+..|++.|||
T Consensus        33 ~WeIiGELGDGAFGKVyKA~nket~~lAAaKvIe-tkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC  111 (1187)
T KOG0579|consen   33 HWEIIGELGDGAFGKVYKAVNKETKLLAAAKVIE-TKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFC  111 (1187)
T ss_pred             HHHHHhhhcCccchhhhhhhcccchhhhhhhhhc-ccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeec
Confidence            3444566899999999999984 45566778874 344556889999999999999999999999988889999999999


Q ss_pred             cCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      .+|-.+..+-+-..          +.+++.||.|||+.+|
T Consensus       112 ~GGAVDaimlEL~r~LtE~QIqvvc~q~ldALn~LHs~~i  151 (1187)
T KOG0579|consen  112 GGGAVDAIMLELGRVLTEDQIQVVCYQVLDALNWLHSQNI  151 (1187)
T ss_pred             CCchHhHHHHHhccccchHHHHHHHHHHHHHHHHHhhcch
Confidence            99998877643221          2458999999999876

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.16  E-value=1.9e-11  Score=125.25  Aligned_cols=115  Identities=22%  Similarity=0.372  Sum_probs=96.2

Q ss_pred             HHHHHhcCcccccccccCCCeeEEEEEeC----C----CcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCcccee
Q 016905          265 ELQLATDNFSESNIIGQGGFGKVYKGVLS----D----NTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIG  335 (380)
Q Consensus       265 ~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~----~----g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g  335 (380)
                      .++...+++...+.+|+|.||.|++|.+.    .    ...||||.+.......+.+.+..|+++|..+ +|+||+.++|
T Consensus       290 ~~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG  369 (609)
T KOG0200|consen  290 KWEIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLG  369 (609)
T ss_pred             ceeechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhhee
Confidence            45556666666779999999999999861    1    4589999998666666789999999999998 6999999999


Q ss_pred             eeeCCCceeEEeecccCCChhhhccccc-----------------c--------cceeeeeecceeeec
Q 016905          336 YCTTSSERILVYPFMQNLSVAYRLRVSH-----------------K--------IYTKIISLSSLHCFS  379 (380)
Q Consensus       336 ~~~~~~~~~lV~Ey~~~GsL~~~L~~~~-----------------~--------~~~~~~aL~yLH~~~  379 (380)
                      +|..++..++|+||+++|+|.++|+.++                 -        ..|++.|.+||+++.
T Consensus       370 ~~t~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~  438 (609)
T KOG0200|consen  370 ACTQDGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVP  438 (609)
T ss_pred             eeccCCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCC
Confidence            9999999999999999999999999877                 0        134788888888765

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.16  E-value=2.9e-11  Score=112.42  Aligned_cols=106  Identities=16%  Similarity=0.200  Sum_probs=82.2

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCc-CCCCccceeeeeCCCceeEEeec
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI-HKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~-H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      +|...+.||+|+||.||++.. .+++.+|+|.+...........+.+|+.++.++. |+||+++++++..++..+++|||
T Consensus         5 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e~   84 (288)
T cd06616           5 DLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICMEL   84 (288)
T ss_pred             HhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEec
Confidence            445567899999999999998 5689999999864333345678899999999996 99999999999988899999999


Q ss_pred             ccCCChhhhc---ccc--cc---------cceeeeeecceeee
Q 016905          350 MQNLSVAYRL---RVS--HK---------IYTKIISLSSLHCF  378 (380)
Q Consensus       350 ~~~GsL~~~L---~~~--~~---------~~~~~~aL~yLH~~  378 (380)
                      ++. ++.++.   ...  ..         ..+++.||+|||+.
T Consensus        85 ~~~-~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~  126 (288)
T cd06616          85 MDI-SLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEE  126 (288)
T ss_pred             ccC-CHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhc
Confidence            864 554432   211  11         13388899999963

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.15  E-value=4.5e-11  Score=110.72  Aligned_cols=107  Identities=25%  Similarity=0.372  Sum_probs=83.6

Q ss_pred             cccccccccCCCeeEEEEEeC-CCcEEEEEEecccCC-CchHHHHHHHHHHHhcC---cCCCCccceeeeeCCCc-----
Q 016905          273 FSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYYS-PGGEAAFQREVHLISVA---IHKNLLQLIGYCTTSSE-----  342 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~~-~~~~~~f~~e~~~l~~l---~H~Niv~l~g~~~~~~~-----  342 (380)
                      |+..+.||+|+||.||+|+.. +++.+|+|++..... ......+.+|++++.++   +|+|++++++++...+.     
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~   80 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELK   80 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCce
Confidence            456788999999999999985 489999999963222 22345677888777655   59999999999988766     


Q ss_pred             eeEEeecccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      .+++|||++ ++|.++++....           ..+++.||+|||+.+|
T Consensus        81 ~~l~~e~~~-~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i  128 (287)
T cd07838          81 LTLVFEHVD-QDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHRI  128 (287)
T ss_pred             eEEEehhcc-cCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            899999997 489988865322           1348899999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.15  E-value=3.7e-12  Score=131.38  Aligned_cols=118  Identities=23%  Similarity=0.304  Sum_probs=100.1

Q ss_pred             HHHHHHHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecc--cCCCchHHHHHHHHHHHhcCcCCCCccceeeeeC
Q 016905          263 CRELQLATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQD--YYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT  339 (380)
Q Consensus       263 ~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~--~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~  339 (380)
                      ..++....++|....+||+|+||.|...++ .+++.+|+|++..  ........-|..|-++|..-..+=||+|.-.+.+
T Consensus        67 v~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD  146 (1317)
T KOG0612|consen   67 VKELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQD  146 (1317)
T ss_pred             HHHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcC
Confidence            345666778899999999999999999998 5689999999963  2334556779999999998888889999988899


Q ss_pred             CCceeEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          340 SSERILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       340 ~~~~~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ..+.|+|||||+||||-.++......         .+++.||+-+|+||+
T Consensus       147 ~~~LYlVMdY~pGGDlltLlSk~~~~pE~~ArFY~aEiVlAldslH~mgy  196 (1317)
T KOG0612|consen  147 ERYLYLVMDYMPGGDLLTLLSKFDRLPEDWARFYTAEIVLALDSLHSMGY  196 (1317)
T ss_pred             ccceEEEEecccCchHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999876533         238999999999985

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.15  E-value=6.9e-12  Score=113.11  Aligned_cols=107  Identities=21%  Similarity=0.373  Sum_probs=85.5

Q ss_pred             hcCcccccccccCCCeeEEEEEe---CC--CcEEEEEEecccCC-CchHHHHHHHHHHHhcCcCCCCccceeeeeC-CCc
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL---SD--NTKVAVKRLQDYYS-PGGEAAFQREVHLISVAIHKNLLQLIGYCTT-SSE  342 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~---~~--g~~vavK~l~~~~~-~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~-~~~  342 (380)
                      ...|+....||+|.||.||||+-   ++  ...+|+|+++...+ .+......+|+.++++++|||++.|.-++.+ +..
T Consensus        23 l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~  102 (438)
T KOG0666|consen   23 LFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKK  102 (438)
T ss_pred             HHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCce
Confidence            34566778899999999999975   22  23799999974322 2345677899999999999999999998887 778


Q ss_pred             eeEEeecccCCChhhhcccccc--------------cceeeeeecceee
Q 016905          343 RILVYPFMQNLSVAYRLRVSHK--------------IYTKIISLSSLHC  377 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~--------------~~~~~~aL~yLH~  377 (380)
                      .+|++||.+. +|...|+-++.              .++++.|+.|||+
T Consensus       103 v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~  150 (438)
T KOG0666|consen  103 VWLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHS  150 (438)
T ss_pred             EEEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhh
Confidence            9999999998 99999874322              2459999999996

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.15  E-value=9.7e-12  Score=112.75  Aligned_cols=110  Identities=19%  Similarity=0.197  Sum_probs=90.8

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC--CchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS--PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|+..++||+|.||.|..++- .+++.+|+|++++..-  ......-..|-++|.+.+||.+..|.-.+...+..+.||
T Consensus       168 ~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCFVM  247 (516)
T KOG0690|consen  168 EDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCFVM  247 (516)
T ss_pred             chhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEEEE
Confidence            5678889999999999999887 5799999999974321  122333467889999999999999988888889999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||..+|.|.-+|...+..         .+++.||.|||+.+|
T Consensus       248 eyanGGeLf~HLsrer~FsE~RtRFYGaEIvsAL~YLHs~~i  289 (516)
T KOG0690|consen  248 EYANGGELFFHLSRERVFSEDRTRFYGAEIVSALGYLHSRNI  289 (516)
T ss_pred             EEccCceEeeehhhhhcccchhhhhhhHHHHHHhhhhhhCCe
Confidence            999999999999754443         349999999999876

>PTZ00284 protein kinase; Provisional

Probab=99.14  E-value=3.3e-11  Score=120.26  Aligned_cols=114  Identities=18%  Similarity=0.305  Sum_probs=85.9

Q ss_pred             HHHHHHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCC------CCccceee
Q 016905          264 RELQLATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHK------NLLQLIGY  336 (380)
Q Consensus       264 ~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~------Niv~l~g~  336 (380)
                      +++...+.+|+..++||+|+||.||+|.. .+++.||||+++..  ....+++..|++++.+++|.      ++++++++
T Consensus       122 ~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~--~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~  199 (467)
T PTZ00284        122 EDIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNV--PKYTRDAKIEIQFMEKVRQADPADRFPLMKIQRY  199 (467)
T ss_pred             CccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecc--hhhHHHHHHHHHHHHHHhhcCcccCcceeeeEEE
Confidence            34445677899999999999999999998 56889999999532  12344566777777776554      58888888


Q ss_pred             eeCC-CceeEEeecccCCChhhhccccccc---------ceeeeeecceee-ecC
Q 016905          337 CTTS-SERILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHC-FSL  380 (380)
Q Consensus       337 ~~~~-~~~~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~-~~i  380 (380)
                      +... +..++||||+ +++|.+++......         .+++.||+|||+ +||
T Consensus       200 ~~~~~~~~~iv~~~~-g~~l~~~l~~~~~l~~~~~~~i~~qi~~aL~yLH~~~gI  253 (467)
T PTZ00284        200 FQNETGHMCIVMPKY-GPCLLDWIMKHGPFSHRHLAQIIFQTGVALDYFHTELHL  253 (467)
T ss_pred             EEcCCceEEEEEecc-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcCCe
Confidence            8764 4678999988 67899988754332         458999999997 465

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.13  E-value=5.7e-11  Score=111.05  Aligned_cols=110  Identities=16%  Similarity=0.246  Sum_probs=85.6

Q ss_pred             hcCcccccccccCCCeeEEEEEeCC-CcEEEEEEecccCCCchHHHHHHHHHHHhcCc-CCCCccceeeeeCCCceeEEe
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLSD-NTKVAVKRLQDYYSPGGEAAFQREVHLISVAI-HKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~~-g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~-H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      .++|+..+.||+|+||.||+|+..+ ++.||||.+..........++..|++++.+.+ ||||+++++++..+...++||
T Consensus        14 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~   93 (296)
T cd06618          14 LNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICM   93 (296)
T ss_pred             cchheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEe
Confidence            3556778899999999999999954 89999999964333334566778888777775 999999999999999999999


Q ss_pred             ecccCCChhhhccccc----------ccceeeeeecceee-ecC
Q 016905          348 PFMQNLSVAYRLRVSH----------KIYTKIISLSSLHC-FSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~----------~~~~~~~aL~yLH~-~~i  380 (380)
                      ||+++ ++.+++....          ...+++.|++|||+ .+|
T Consensus        94 e~~~~-~l~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~~i  136 (296)
T cd06618          94 ELMST-CLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKEKHGV  136 (296)
T ss_pred             eccCc-CHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCCE
Confidence            99964 6666654321          22348899999996 353

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.12  E-value=6.7e-12  Score=104.22  Aligned_cols=101  Identities=30%  Similarity=0.537  Sum_probs=87.8

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +++.|.||+|.++ .+|+.+..|.+|+.|++++|++. .+|.++.++++|+.|+++-|+|. .+|..|+.++.|+.|||+
T Consensus        34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt  110 (264)
T KOG0617|consen   34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT  110 (264)
T ss_pred             hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence            7889999999999 78999999999999999999999 89999999999999999999999 999999999999999999


Q ss_pred             CCcccc-cCccccccc---cccccCCCc
Q 016905          157 SNNLTG-RIPMQLFSV---ATFNFTGTH  180 (380)
Q Consensus       157 ~N~l~g-~~p~~~~~~---~~~~~~gN~  180 (380)
                      +|+++- .+|..+.-+   ..+.+..|.
T Consensus       111 ynnl~e~~lpgnff~m~tlralyl~dnd  138 (264)
T KOG0617|consen  111 YNNLNENSLPGNFFYMTTLRALYLGDND  138 (264)
T ss_pred             ccccccccCCcchhHHHHHHHHHhcCCC
Confidence            999974 456554332   344444443

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.12  E-value=4.2e-12  Score=109.97  Aligned_cols=107  Identities=18%  Similarity=0.398  Sum_probs=87.6

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCc-CCCCccceeeeeCCC--ceeE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI-HKNLLQLIGYCTTSS--ERIL  345 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~-H~Niv~l~g~~~~~~--~~~l  345 (380)
                      .++|+..+.+|+|.+++||.|.. .+.+.++||.+++.    ..+...+|+.+|..++ ||||++|++...++.  ...|
T Consensus        37 ~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPV----kkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaL  112 (338)
T KOG0668|consen   37 QDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPV----KKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSL  112 (338)
T ss_pred             cchHHHHHHHcCccHhhHhcccccCCCceEEEeeechH----HHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchh
Confidence            45677788999999999999986 66788999999542    3567899999999997 999999999987654  4689


Q ss_pred             EeecccCCChhhhccc------ccccceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRV------SHKIYTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~------~~~~~~~~~aL~yLH~~~i  380 (380)
                      |+||+.|-+...+...      +-...+++.||+|||+|||
T Consensus       113 iFE~v~n~Dfk~ly~tl~d~dIryY~~elLkALdyCHS~GI  153 (338)
T KOG0668|consen  113 IFEYVNNTDFKQLYPTLTDYDIRYYIYELLKALDYCHSMGI  153 (338)
T ss_pred             HhhhhccccHHHHhhhhchhhHHHHHHHHHHHHhHHHhcCc
Confidence            9999999887655432      2224679999999999997

>PRK10345 hypothetical protein; Provisional

Probab=99.11  E-value=6.7e-11  Score=104.79  Aligned_cols=105  Identities=15%  Similarity=0.217  Sum_probs=78.5

Q ss_pred             cccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-----cCCCCccceeeeeCCC---cee
Q 016905          273 FSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-----IHKNLLQLIGYCTTSS---ERI  344 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-----~H~Niv~l~g~~~~~~---~~~  344 (380)
                      ++..+.||+|+||.||+  .+.....+||++... .....+.+.+|+..+..+     .||||++++|++.++.   ..+
T Consensus         4 L~~~~~LG~G~~~~Vy~--hp~~~~k~IKv~~~~-~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~   80 (210)
T PRK10345          4 LSEQSPLGTGRHRKCYA--HPEDAQRCIKIVYHR-GDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVY   80 (210)
T ss_pred             cCCcceecCCCceEEEE--CCCCcCeEEEEEecc-ccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEE
Confidence            34567899999999996  533333479988532 223467899999999999     5799999999998763   333


Q ss_pred             -EEeec--ccCCChhhhcccccc------cceeeeee-cceeeecC
Q 016905          345 -LVYPF--MQNLSVAYRLRVSHK------IYTKIISL-SSLHCFSL  380 (380)
Q Consensus       345 -lV~Ey--~~~GsL~~~L~~~~~------~~~~~~aL-~yLH~~~i  380 (380)
                       +|+||  ++.|+|.+++.+...      ..+++.++ +|||+.+|
T Consensus        81 ~~I~e~~G~~~~tL~~~l~~~~~~e~~~~~~~~L~~l~~yLh~~~I  126 (210)
T PRK10345         81 DVIADFDGKPSITLTEFAEQCRYEEDVAQLRQLLKKLKRYLLDNRI  126 (210)
T ss_pred             EEEecCCCCcchhHHHHHHcccccHhHHHHHHHHHHHHHHHHHCCE
Confidence             78999  668999999965321      23466677 99999876

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.10  E-value=1.2e-10  Score=110.77  Aligned_cols=108  Identities=21%  Similarity=0.284  Sum_probs=83.8

Q ss_pred             CcccccccccCCCeeEEEEEe-CC--CcEEEEEEecccCC-CchHHHHHHHHHHHhcC-cCCCCccceeeeeCC----Cc
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SD--NTKVAVKRLQDYYS-PGGEAAFQREVHLISVA-IHKNLLQLIGYCTTS----SE  342 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~--g~~vavK~l~~~~~-~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~----~~  342 (380)
                      +|+..+.||+|+||.||++.. .+  +..+|+|++..... ....+.+.+|++++.++ +||||+++++++...    ..
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~   80 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNE   80 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCc
Confidence            366678899999999999998 34  77999999864222 22356788999999999 599999999875432    34


Q ss_pred             eeEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      .++++||+. ++|.+++......         .+++.||+|||+.||
T Consensus        81 ~~~~~e~~~-~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~gi  126 (332)
T cd07857          81 LYLYEELME-ADLHQIIRSGQPLTDAHFQSFIYQILCGLKYIHSANV  126 (332)
T ss_pred             EEEEEeccc-CCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            788899986 6899988654332         348999999999885

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.10  E-value=7.2e-11  Score=83.24  Aligned_cols=61  Identities=41%  Similarity=0.653  Sum_probs=49.4

Q ss_pred             ccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECcCCcc
Q 016905          100 KFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNL  160 (380)
Q Consensus       100 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l  160 (380)
                      ++|++|++++|+|+...+..|..+++|++|+|++|+++...|..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4678888888888855556788888888888888888866667888888888888888875

...

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.09  E-value=4.9e-11  Score=110.66  Aligned_cols=118  Identities=22%  Similarity=0.328  Sum_probs=95.8

Q ss_pred             HHHHHHHhcCcccccccccCCCeeEEEEEeC------CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceee
Q 016905          263 CRELQLATDNFSESNIIGQGGFGKVYKGVLS------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGY  336 (380)
Q Consensus       263 ~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~  336 (380)
                      .+++....+.++....+.+|.||.||+|.+.      +.+.|-||.+++..++-+...|..|.-.+..++|||+.++.|+
T Consensus       276 ~~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V  355 (563)
T KOG1024|consen  276 LQELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGV  355 (563)
T ss_pred             HHhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEE
Confidence            3455666677888889999999999999763      3456788888766666677889999999999999999999999


Q ss_pred             eeCC-CceeEEeecccCCChhhhccccccc-----------------ceeeeeecceeeecC
Q 016905          337 CTTS-SERILVYPFMQNLSVAYRLRVSHKI-----------------YTKIISLSSLHCFSL  380 (380)
Q Consensus       337 ~~~~-~~~~lV~Ey~~~GsL~~~L~~~~~~-----------------~~~~~aL~yLH~~~i  380 (380)
                      +.++ +..+++|.|+.-|+|..||+..+..                 .++..|++|||+.+|
T Consensus       356 ~ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~V  417 (563)
T KOG1024|consen  356 SIEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHGV  417 (563)
T ss_pred             EeeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcCc
Confidence            9875 4578999999999999999843322                 237889999999875

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.07  E-value=4.8e-11  Score=120.01  Aligned_cols=111  Identities=12%  Similarity=0.168  Sum_probs=81.7

Q ss_pred             HhcCcccccccccCCCeeEEEEEeC--CCcEEEEEEec--------------c--cCCCchHHHHHHHHHHHhcCcCCCC
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVLS--DNTKVAVKRLQ--------------D--YYSPGGEAAFQREVHLISVAIHKNL  330 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~~--~g~~vavK~l~--------------~--~~~~~~~~~f~~e~~~l~~l~H~Ni  330 (380)
                      ..++|+..+.||+|+||+||++...  ++...+.|.+.              .  .........|.+|++++.+++||||
T Consensus       146 ~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnI  225 (501)
T PHA03210        146 FLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENI  225 (501)
T ss_pred             hhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCc
Confidence            3567999999999999999998762  22222222110              0  0111234568899999999999999


Q ss_pred             ccceeeeeCCCceeEEeecccCCChhhhccccc--------------ccceeeeeecceeeecC
Q 016905          331 LQLIGYCTTSSERILVYPFMQNLSVAYRLRVSH--------------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       331 v~l~g~~~~~~~~~lV~Ey~~~GsL~~~L~~~~--------------~~~~~~~aL~yLH~~~i  380 (380)
                      |++++++...+..++|+||+. ++|.+++....              ...+++.||+|||+++|
T Consensus       226 v~l~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~gI  288 (501)
T PHA03210        226 LKIEEILRSEANTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDKKL  288 (501)
T ss_pred             CcEeEEEEECCeeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhCCe
Confidence            999999999999999999985 57877764321              22458899999999886

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.06  E-value=1.6e-10  Score=116.78  Aligned_cols=117  Identities=23%  Similarity=0.285  Sum_probs=94.1

Q ss_pred             eCHHHHHHHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeee
Q 016905          261 FSCRELQLATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCT  338 (380)
Q Consensus       261 ~~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~  338 (380)
                      ..++.+...++-|...++||.|.+|.||+++. ++++.+|+|++...  ....++...|.+++... +|||++.++|++.
T Consensus         9 ~~~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~--~d~deEiE~eynil~~~~~hpnv~~fyg~~~   86 (953)
T KOG0587|consen    9 IDLSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPT--EDEEEEIELEYNMLKKYSHHPNVATFYGAFI   86 (953)
T ss_pred             cchhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCC--ccccHHHHHHHHHHHhccCCCCcceEEEEEE
Confidence            34455566778888999999999999999997 67999999998643  33456677888888877 7999999999986


Q ss_pred             C-----CCceeEEeecccCCChhhhccccccc-----------ceeeeeecceeeec
Q 016905          339 T-----SSERILVYPFMQNLSVAYRLRVSHKI-----------YTKIISLSSLHCFS  379 (380)
Q Consensus       339 ~-----~~~~~lV~Ey~~~GsL~~~L~~~~~~-----------~~~~~aL~yLH~~~  379 (380)
                      .     +++.|||||||.+||.-|++......           ++++.|+.+||...
T Consensus        87 k~~~~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~nk  143 (953)
T KOG0587|consen   87 KKDPGNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNNK  143 (953)
T ss_pred             EecCCCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcc
Confidence            3     57899999999999999998754322           33888999999753

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.05  E-value=2.5e-10  Score=99.60  Aligned_cols=102  Identities=25%  Similarity=0.377  Sum_probs=85.2

Q ss_pred             cccCCCeeEEEEEeCC-CcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCCChhh
Q 016905          279 IGQGGFGKVYKGVLSD-NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAY  357 (380)
Q Consensus       279 lg~G~~g~Vy~~~~~~-g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~GsL~~  357 (380)
                      ||+|.+|.||++.... ++.+++|++.........+.+.+|++.+.+++|++++++++++......++++||+++++|.+
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~   80 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKD   80 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHH
Confidence            6899999999999844 899999998643222135789999999999999999999999999889999999999999999


Q ss_pred             hccccc-c---------cceeeeeecceeeecC
Q 016905          358 RLRVSH-K---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       358 ~L~~~~-~---------~~~~~~aL~yLH~~~i  380 (380)
                      ++.... .         ..+++.+++|||+.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~  113 (215)
T cd00180          81 LLKENEGKLSEDEILRILLQILEGLEYLHSNGI  113 (215)
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            987541 1         1348889999998764

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.04  E-value=1.7e-10  Score=104.37  Aligned_cols=93  Identities=18%  Similarity=0.180  Sum_probs=75.8

Q ss_pred             CCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCCChhhhcc
Q 016905          282 GGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR  360 (380)
Q Consensus       282 G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~GsL~~~L~  360 (380)
                      |.+|.||++.. .+++.+|+|++...      ..+.+|...+....||||+++++++...+..++||||+++|+|.+++.
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~   77 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKS------SEYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHIS   77 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecch------hhhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHH
Confidence            78999999998 56899999998542      133455555666679999999999999999999999999999999986


Q ss_pred             ccccc---------ceeeeeecceeeecC
Q 016905          361 VSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       361 ~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      .....         .+++.||+|||+.+|
T Consensus        78 ~~~~l~~~~~~~~~~ql~~~l~~lH~~~i  106 (237)
T cd05576          78 KFLNIPEECVKRWAAEMVVALDALHREGI  106 (237)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            54332         348899999999875

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.03  E-value=2.2e-10  Score=100.21  Aligned_cols=102  Identities=16%  Similarity=0.124  Sum_probs=70.8

Q ss_pred             cccccCCCeeEEEEEeCCCcEEEEEEecccCCC-ch-------HHHH-----------------HHHHHHHhcCcCCCCc
Q 016905          277 NIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSP-GG-------EAAF-----------------QREVHLISVAIHKNLL  331 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~-~~-------~~~f-----------------~~e~~~l~~l~H~Niv  331 (380)
                      ..||+|+||.||+|..++|+.||||+++..... ..       ...|                 ..|++.+.++.|+++.
T Consensus         3 ~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v~   82 (190)
T cd05147           3 GCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGIP   82 (190)
T ss_pred             CccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            579999999999999888999999999643211 01       1122                 3499999999988875


Q ss_pred             cceeeeeCCCceeEEeecccCCChhhhcccccc---------cceeeeeecce-eeecC
Q 016905          332 QLIGYCTTSSERILVYPFMQNLSVAYRLRVSHK---------IYTKIISLSSL-HCFSL  380 (380)
Q Consensus       332 ~l~g~~~~~~~~~lV~Ey~~~GsL~~~L~~~~~---------~~~~~~aL~yL-H~~~i  380 (380)
                      ....+..  ...+|||||++++++.........         ..+++.+|+|+ |+.||
T Consensus        83 ~p~~~~~--~~~~iVmE~i~g~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~l~H~~gi  139 (190)
T cd05147          83 CPEPILL--KSHVLVMEFIGDDGWAAPRLKDAPLSESKARELYLQVIQIMRILYQDCRL  139 (190)
T ss_pred             CCcEEEe--cCCEEEEEEeCCCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            5444332  234899999998877654221111         23478899999 68765

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.03  E-value=2.1e-10  Score=100.84  Aligned_cols=102  Identities=14%  Similarity=0.145  Sum_probs=80.8

Q ss_pred             ccccCCCeeEEEEEeCCCcEEEEEEecccCCCc-------hHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          278 IIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPG-------GEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       278 ~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~-------~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      .||+|+||.||+|.+ +|..+++|.........       ....+.+|++++..++|+++.....++...+..++||||+
T Consensus         1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~   79 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYI   79 (199)
T ss_pred             CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEE
Confidence            489999999999996 67889999864321111       1356788999999999998777777777777789999999


Q ss_pred             cCCChhhhccccc--ccceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSH--KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~--~~~~~~~aL~yLH~~~i  380 (380)
                      ++++|.+++....  ...++..+|.++|+.++
T Consensus        80 ~g~~l~~~~~~~~~~~~~~i~~~l~~lH~~gi  111 (199)
T TIGR03724        80 EGKPLKDVIEEGNDELLREIGRLVGKLHKAGI  111 (199)
T ss_pred             CCccHHHHHhhcHHHHHHHHHHHHHHHHHCCe
Confidence            9999999887642  35668899999998774

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.02  E-value=4.1e-11  Score=106.39  Aligned_cols=110  Identities=15%  Similarity=0.195  Sum_probs=91.1

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCC----c---hHHHHHHHHHHHhcC-cCCCCccceeeeeCCC
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSP----G---GEAAFQREVHLISVA-IHKNLLQLIGYCTTSS  341 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~---~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~  341 (380)
                      +.|.+.+++|+|..+.|-++.. ++|...|+|++......    .   -.++-.+|+.+|+++ -||+|+++.+++..+.
T Consensus        17 ~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~s   96 (411)
T KOG0599|consen   17 AKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESDA   96 (411)
T ss_pred             hhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCcc
Confidence            4577789999999999999988 67899999999632211    1   134456899999998 5999999999999999


Q ss_pred             ceeEEeecccCCChhhhcccc---------cccceeeeeecceeeecC
Q 016905          342 ERILVYPFMQNLSVAYRLRVS---------HKIYTKIISLSSLHCFSL  380 (380)
Q Consensus       342 ~~~lV~Ey~~~GsL~~~L~~~---------~~~~~~~~aL~yLH~~~i  380 (380)
                      ..++|+|.|+.|.|.|+|...         +.++++.+|+.|||..+|
T Consensus        97 F~FlVFdl~prGELFDyLts~VtlSEK~tR~iMrqlfegVeylHa~~I  144 (411)
T KOG0599|consen   97 FVFLVFDLMPRGELFDYLTSKVTLSEKETRRIMRQLFEGVEYLHARNI  144 (411)
T ss_pred             hhhhhhhhcccchHHHHhhhheeecHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999743         345679999999998876

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.02  E-value=5.8e-11  Score=104.11  Aligned_cols=109  Identities=19%  Similarity=0.160  Sum_probs=89.5

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCC-----Cce
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS-----SER  343 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~-----~~~  343 (380)
                      .+.|...+.+|+|+|+-||.++. .++..+|+|++.- ...++.+..++|++..++++|||++++++++..+     .+.
T Consensus        20 ~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c-~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~   98 (302)
T KOG2345|consen   20 NKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILC-HSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEA   98 (302)
T ss_pred             CceEEEeeeecCCCceeeeeecccCcccchhhheeec-cchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeE
Confidence            34677789999999999999985 7889999999953 2345677889999999999999999999988653     348


Q ss_pred             eEEeecccCCChhhhccccccc-------------ceeeeeecceeeec
Q 016905          344 ILVYPFMQNLSVAYRLRVSHKI-------------YTKIISLSSLHCFS  379 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~~-------------~~~~~aL~yLH~~~  379 (380)
                      ||+++|...|||.+.+...+..             ..+.+||++||+..
T Consensus        99 yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~  147 (302)
T KOG2345|consen   99 YLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKE  147 (302)
T ss_pred             EEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccC
Confidence            9999999999999998754322             22888999999764

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=98.99  E-value=2.2e-10  Score=112.82  Aligned_cols=106  Identities=18%  Similarity=0.304  Sum_probs=88.7

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCc-CC-----CCccceeeeeCCCcee
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI-HK-----NLLQLIGYCTTSSERI  344 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~-H~-----Niv~l~g~~~~~~~~~  344 (380)
                      .|...++||+|+||.|-||.. .+++.||||+++..  ..-.++-..|+.+|..++ |.     |+|++++|+..+++.+
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~--k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~Hlc  264 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNK--KRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLC  264 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccC--hHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeecccccccee
Confidence            677899999999999999998 66999999999642  223455678999999886 33     8999999999999999


Q ss_pred             EEeecccCCChhhhccccccc-----------ceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHKI-----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~~-----------~~~~~aL~yLH~~~i  380 (380)
                      ||+|.+.. +|+++|+..+..           .+++.||..||+.+|
T Consensus       265 iVfELL~~-NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l~I  310 (586)
T KOG0667|consen  265 IVFELLST-NLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHELGI  310 (586)
T ss_pred             eeehhhhh-hHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            99999976 999999865432           459999999999876

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=98.99  E-value=3.5e-11  Score=108.12  Aligned_cols=106  Identities=24%  Similarity=0.281  Sum_probs=84.7

Q ss_pred             HhcCccc-ccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeC----CC
Q 016905          269 ATDNFSE-SNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTT----SS  341 (380)
Q Consensus       269 ~~~~~~~-~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~----~~  341 (380)
                      .+++|+. ..+||-|-.|.|-.+.. .+++.+|+|++.+.      ....+|+++--.. .|||||+++.+|..    ..
T Consensus        59 itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds------~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rk  132 (400)
T KOG0604|consen   59 ITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDS------PKARREVELHWMASGHPHIVSIIDVYENSYQGRK  132 (400)
T ss_pred             chhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcC------HHHHhHhhhhhhhcCCCceEEeehhhhhhccCce
Confidence            3444543 36899999999999988 67899999999542      3346888876655 69999999998864    35


Q ss_pred             ceeEEeecccCCChhhhccccccc-----------ceeeeeecceeeecC
Q 016905          342 ERILVYPFMQNLSVAYRLRVSHKI-----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       342 ~~~lV~Ey~~~GsL~~~L~~~~~~-----------~~~~~aL~yLH~~~i  380 (380)
                      ..++|||+|++|.|+..+++++..           +++..|++|||+++|
T Consensus       133 cLLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~nI  182 (400)
T KOG0604|consen  133 CLLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSMNI  182 (400)
T ss_pred             eeEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhcch
Confidence            578999999999999999876552           448999999999987

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=98.98  E-value=5.7e-10  Score=99.96  Aligned_cols=98  Identities=19%  Similarity=0.241  Sum_probs=82.0

Q ss_pred             CCeeEEEEEeC-CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCCChhhhccc
Q 016905          283 GFGKVYKGVLS-DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRV  361 (380)
Q Consensus       283 ~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~GsL~~~L~~  361 (380)
                      +||.||+|+.. +++.+|+|++.........+.|.+|++.+.+++|+|++++.+++......+++|||+++++|.+++..
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~   80 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKK   80 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHh
Confidence            58999999995 58999999996433322268899999999999999999999999998999999999999999999876


Q ss_pred             ccc---------cceeeeeecceeeecC
Q 016905          362 SHK---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       362 ~~~---------~~~~~~aL~yLH~~~i  380 (380)
                      ...         ..+++.+++|||+.+|
T Consensus        81 ~~~~~~~~~~~~~~~l~~~l~~lh~~~i  108 (244)
T smart00220       81 RGRLSEDEARFYARQILSALEYLHSNGI  108 (244)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHcCe
Confidence            432         1338889999998764

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=98.97  E-value=5e-10  Score=108.61  Aligned_cols=110  Identities=15%  Similarity=0.286  Sum_probs=88.3

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC-------CchHHHHHHHHHHHhcCc---CCCCccceeeeeC
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS-------PGGEAAFQREVHLISVAI---HKNLLQLIGYCTT  339 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-------~~~~~~f~~e~~~l~~l~---H~Niv~l~g~~~~  339 (380)
                      .+|.....+|+|+||.|+.|++ ++...|+||.+.+..-       ....-..-.|+.+|+.+.   |+||++++.++.+
T Consensus       561 s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEd  640 (772)
T KOG1152|consen  561 SDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFED  640 (772)
T ss_pred             ccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeec
Confidence            4577888999999999999999 4466899998863211       111223457999999997   9999999999999


Q ss_pred             CCceeEEeecc-cCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          340 SSERILVYPFM-QNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       340 ~~~~~lV~Ey~-~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ++..||+||-- ++-+|+++|..+..+         +|+..|+++||+.||
T Consensus       641 dd~yyl~te~hg~gIDLFd~IE~kp~m~E~eAk~IFkQV~agi~hlh~~~i  691 (772)
T KOG1152|consen  641 DDYYYLETEVHGEGIDLFDFIEFKPRMDEPEAKLIFKQVVAGIKHLHDQGI  691 (772)
T ss_pred             CCeeEEEecCCCCCcchhhhhhccCccchHHHHHHHHHHHhccccccccCc
Confidence            99999999964 567899999766554         459999999999987

>PRK14879 serine/threonine protein kinase; Provisional

Probab=98.96  E-value=6.5e-10  Score=98.66  Aligned_cols=103  Identities=15%  Similarity=0.128  Sum_probs=82.0

Q ss_pred             cccccCCCeeEEEEEeCCCcEEEEEEecccCCCc-------hHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          277 NIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPG-------GEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~-------~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      +.||+|++|.||+|.. +|..+++|+........       ....+.+|++++..++|+++.....++...+..++||||
T Consensus         2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~   80 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEY   80 (211)
T ss_pred             cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEE
Confidence            5689999999999998 77789999865322111       134678999999999999999888888777888999999


Q ss_pred             ccCCChhhhccccc-----ccceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSH-----KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~-----~~~~~~~aL~yLH~~~i  380 (380)
                      +++++|.+++....     ...++..+|.++|+.++
T Consensus        81 ~~G~~L~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i  116 (211)
T PRK14879         81 IEGEPLKDLINSNGMEELELSREIGRLVGKLHSAGI  116 (211)
T ss_pred             eCCcCHHHHHHhccHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999986532     23457889999998764

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.94  E-value=1.6e-10  Score=105.27  Aligned_cols=112  Identities=20%  Similarity=0.250  Sum_probs=93.6

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCcee
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~  344 (380)
                      ...+|+..++||+|+|+.|..+.+ .+.+.+|+|++++..  ...+.+..+.|-.+.... +||.+|.|..++.++...+
T Consensus       248 ~l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlf  327 (593)
T KOG0695|consen  248 GLQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLF  327 (593)
T ss_pred             ccccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEE
Confidence            345788899999999999999998 668899999987432  233456677888777765 7999999999999999999


Q ss_pred             EEeecccCCChhhhcccccccce---------eeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHKIYT---------KIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~~~~---------~~~aL~yLH~~~i  380 (380)
                      .|.||+++|+|.-+++.++...+         ++.||.|||+.||
T Consensus       328 fvieyv~ggdlmfhmqrqrklpeeharfys~ei~lal~flh~rgi  372 (593)
T KOG0695|consen  328 FVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEICLALNFLHERGI  372 (593)
T ss_pred             EEEEEecCcceeeehhhhhcCcHHHhhhhhHHHHHHHHHHhhcCe
Confidence            99999999999998887766543         8999999999987

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.93  E-value=7.8e-10  Score=77.89  Aligned_cols=60  Identities=32%  Similarity=0.506  Sum_probs=55.9

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF  136 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l  136 (380)
                      +|+.|+|++|+++...+..|.++++|++|++++|.++...|..|.++++|++|+|++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            588999999999977777899999999999999999988888999999999999999986

...

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=98.92  E-value=7.5e-10  Score=112.28  Aligned_cols=110  Identities=15%  Similarity=0.156  Sum_probs=83.4

Q ss_pred             hcCcccccccccCCCeeEEEEEeCCCcEEEEEEe-cccCCC------chHHHHHHHHHHHhcCcCCCCccceeeeeCCCc
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRL-QDYYSP------GGEAAFQREVHLISVAIHKNLLQLIGYCTTSSE  342 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l-~~~~~~------~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~  342 (380)
                      ...|...+.||+|+||.||+|.+.... +++|+. ......      ...+.+.+|++++.+++|++++....++...+.
T Consensus       332 ~~~~~~~~~iG~G~~g~Vy~~~~~~~~-~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~  410 (535)
T PRK09605        332 KRRKIPDHLIGKGAEADIKKGEYLGRD-AVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEE  410 (535)
T ss_pred             ccccCccceeccCCcEEEEEEeecCcc-ceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCC
Confidence            344456789999999999999984443 444432 211111      123568899999999999999998888888778


Q ss_pred             eeEEeecccCCChhhhcccc-cccceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVS-HKIYTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~-~~~~~~~~aL~yLH~~~i  380 (380)
                      .++||||+++++|.++++.. ....++..+|.|||+.+|
T Consensus       411 ~~lv~E~~~g~~L~~~l~~~~~~~~~i~~~L~~lH~~gi  449 (535)
T PRK09605        411 KTIVMEYIGGKDLKDVLEGNPELVRKVGEIVAKLHKAGI  449 (535)
T ss_pred             CEEEEEecCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            89999999999999998632 334568999999999875

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.92  E-value=7.1e-10  Score=103.42  Aligned_cols=101  Identities=28%  Similarity=0.440  Sum_probs=47.4

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCcc-ccCCCCCCEEEC
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPAT-WSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~-~~~l~~L~~L~l  155 (380)
                      +++.|+|++|-+. .+|.+++.+..||.||+|+|+|. .+|..+..+..|+++-.++|++ |.+|.+ +.++.+|..|||
T Consensus       436 kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi-~~vd~~~l~nm~nL~tLDL  512 (565)
T KOG0472|consen  436 KLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQI-GSVDPSGLKNMRNLTTLDL  512 (565)
T ss_pred             cceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccc-cccChHHhhhhhhcceecc
Confidence            3444444444443 44444444444555555544443 2222222222222221222222 244443 666666777777


Q ss_pred             cCCcccccCccccccc---cccccCCCcc
Q 016905          156 SSNNLTGRIPMQLFSV---ATFNFTGTHL  181 (380)
Q Consensus       156 s~N~l~g~~p~~~~~~---~~~~~~gN~~  181 (380)
                      .+|.+. .||..++++   ..+.+.|||+
T Consensus       513 ~nNdlq-~IPp~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  513 QNNDLQ-QIPPILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             CCCchh-hCChhhccccceeEEEecCCcc
Confidence            777666 566655544   3445666665

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=98.90  E-value=2.1e-09  Score=94.11  Aligned_cols=103  Identities=16%  Similarity=0.086  Sum_probs=73.1

Q ss_pred             ccccccCCCeeEEEEEeCCCcEEEEEEecccCCC-ch------------------------HHHHHHHHHHHhcCcCCCC
Q 016905          276 SNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSP-GG------------------------EAAFQREVHLISVAIHKNL  330 (380)
Q Consensus       276 ~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~-~~------------------------~~~f~~e~~~l~~l~H~Ni  330 (380)
                      ...||+|++|.||+|...+|+.||||+++..... ..                        ...+..|.+.+.+++|+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   81 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV   81 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3579999999999999888999999998743211 00                        1224678999999999998


Q ss_pred             ccceeeeeCCCceeEEeecccCCChhhh-cccccc--------cceeeeeecceee-ecC
Q 016905          331 LQLIGYCTTSSERILVYPFMQNLSVAYR-LRVSHK--------IYTKIISLSSLHC-FSL  380 (380)
Q Consensus       331 v~l~g~~~~~~~~~lV~Ey~~~GsL~~~-L~~~~~--------~~~~~~aL~yLH~-~~i  380 (380)
                      .....+...  ..+|||||++++++... +.....        ..+++.++.|+|+ .||
T Consensus        82 ~~p~~~~~~--~~~lVmE~~~g~~~~~~~l~~~~~~~~~~~~i~~~l~~~l~~lH~~~gi  139 (190)
T cd05145          82 PVPEPILLK--KNVLVMEFIGDDGSPAPRLKDVPLEEEEAEELYEQVVEQMRRLYQEAGL  139 (190)
T ss_pred             CCceEEEec--CCEEEEEEecCCCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHhCCE
Confidence            665555443  34899999998865433 332211        1348899999998 764

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=98.88  E-value=2.5e-10  Score=107.52  Aligned_cols=106  Identities=20%  Similarity=0.295  Sum_probs=83.0

Q ss_pred             cccccccccCCCeeEEEEEe-CCCcEEEEEEec--ccCC----CchHHHHHHHHHHHhcCcCCCCccceeeeeC-CCcee
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQ--DYYS----PGGEAAFQREVHLISVAIHKNLLQLIGYCTT-SSERI  344 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~--~~~~----~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~-~~~~~  344 (380)
                      |-....||+|+|+.||||.. ...++||||+-.  ....    ..-.+-..+|.++-..++||.||++++|+.- .+.++
T Consensus       465 YLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtdsFC  544 (775)
T KOG1151|consen  465 YLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDSFC  544 (775)
T ss_pred             HHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccccce
Confidence            44566899999999999987 557899999764  1111    1123445689999999999999999999875 45678


Q ss_pred             EEeecccCCChhhhcccccccce---------eeeeecceeee
Q 016905          345 LVYPFMQNLSVAYRLRVSHKIYT---------KIISLSSLHCF  378 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~~~~---------~~~aL~yLH~~  378 (380)
                      -|+|||++.+|+-||+..+.+.+         ++.||.||..+
T Consensus       545 TVLEYceGNDLDFYLKQhklmSEKEARSIiMQiVnAL~YLNEi  587 (775)
T KOG1151|consen  545 TVLEYCEGNDLDFYLKQHKLMSEKEARSIIMQIVNALKYLNEI  587 (775)
T ss_pred             eeeeecCCCchhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999987665543         88899998654

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=98.86  E-value=8e-10  Score=106.74  Aligned_cols=109  Identities=20%  Similarity=0.285  Sum_probs=92.6

Q ss_pred             cCcccccccccCCCeeEEEEEeCCCcEEEEEEec-ccCCCchHHHHHHHHHHHhcCc-CCCCccceeeeeCCCceeEEee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQ-DYYSPGGEAAFQREVHLISVAI-HKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~-~~~~~~~~~~f~~e~~~l~~l~-H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      ..|+..+.||+||.+.||++...+.+.+|+|++. ...+.+....|.+|+..|.+++ |.+||+|++|-..++..|||||
T Consensus       361 ~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvmE  440 (677)
T KOG0596|consen  361 REYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVME  440 (677)
T ss_pred             chhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEee
Confidence            3466778999999999999998888889998886 3344556788999999999994 9999999999999999999999


Q ss_pred             cccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      |=+- ||..+|+.+...          .++++|+.+.|.+||
T Consensus       441 ~Gd~-DL~kiL~k~~~~~~~~~lk~ywkqML~aV~~IH~~gI  481 (677)
T KOG0596|consen  441 CGDI-DLNKILKKKKSIDPDWFLKFYWKQMLLAVKTIHQHGI  481 (677)
T ss_pred             cccc-cHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHhce
Confidence            8754 999999865443          248999999999987

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.85  E-value=5.4e-10  Score=104.20  Aligned_cols=85  Identities=29%  Similarity=0.462  Sum_probs=63.9

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCe-EEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEEC
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLAS-LELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~-L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~l  155 (380)
                      -|+.++++.|++. ++|..+..+..++. +++++|.++ -+|..+..+++|+.|+|++|-|. .+|..++.+..|+.||+
T Consensus       389 ~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~Lnl  465 (565)
T KOG0472|consen  389 IVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNL  465 (565)
T ss_pred             ceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecc
Confidence            4889999999997 78877777665544 445555554 77888888888888888888777 78888888888888888


Q ss_pred             cCCcccccCc
Q 016905          156 SSNNLTGRIP  165 (380)
Q Consensus       156 s~N~l~g~~p  165 (380)
                      |.|+|. .+|
T Consensus       466 S~NrFr-~lP  474 (565)
T KOG0472|consen  466 SFNRFR-MLP  474 (565)
T ss_pred             cccccc-cch
Confidence            888775 444

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=98.83  E-value=1.7e-09  Score=110.04  Aligned_cols=107  Identities=21%  Similarity=0.338  Sum_probs=72.3

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CC----CcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceee------e
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SD----NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGY------C  337 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~----g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~------~  337 (380)
                      ..++|+..+.||+|+||.||+|++ .+    +..||||++....   ..+.+..|  .+....+.+++.+...      +
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~---~~e~~~~e--~l~~~~~~~~~~~~~~~~~~~~~  204 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYG---AVEIWMNE--RVRRACPNSCADFVYGFLEPVSS  204 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccc---hhHHHHHH--HHHhhchhhHHHHHHhhhccccc
Confidence            567899999999999999999998 44    7899999985321   11222222  1122222233222211      2


Q ss_pred             eCCCceeEEeecccCCChhhhccccc-----------------------------ccceeeeeecceeeecC
Q 016905          338 TTSSERILVYPFMQNLSVAYRLRVSH-----------------------------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       338 ~~~~~~~lV~Ey~~~GsL~~~L~~~~-----------------------------~~~~~~~aL~yLH~~~i  380 (380)
                      ..+++.++||||+++|+|.++++...                             ...+++.||+|||+.+|
T Consensus       205 ~~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~gI  276 (566)
T PLN03225        205 KKEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTGI  276 (566)
T ss_pred             ccCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCCE
Confidence            45667999999999999999987432                             12347889999999875

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=98.82  E-value=5.8e-10  Score=98.83  Aligned_cols=101  Identities=19%  Similarity=0.246  Sum_probs=78.9

Q ss_pred             cccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeEEeecccC
Q 016905          275 ESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERILVYPFMQN  352 (380)
Q Consensus       275 ~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~lV~Ey~~~  352 (380)
                      ....||+|+||+|+|-.+ +.|+..|||+++-.....+.+++..|.+...+- ..||||+++|.+..++..|+-||.|.-
T Consensus        68 dlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMELMd~  147 (361)
T KOG1006|consen   68 DLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMELMDI  147 (361)
T ss_pred             HHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHHHhh
Confidence            356799999999999998 679999999997544555678899998876554 799999999999999999999999964


Q ss_pred             CChhhhccc-----cccc---------ceeeeeeccee
Q 016905          353 LSVAYRLRV-----SHKI---------YTKIISLSSLH  376 (380)
Q Consensus       353 GsL~~~L~~-----~~~~---------~~~~~aL~yLH  376 (380)
                       ||..+...     +...         ..++.||+||.
T Consensus       148 -SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK  184 (361)
T KOG1006|consen  148 -SLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLK  184 (361)
T ss_pred             -hHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHH
Confidence             77655431     1111         22677888875

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.81  E-value=2.6e-09  Score=91.36  Aligned_cols=100  Identities=29%  Similarity=0.425  Sum_probs=36.1

Q ss_pred             CEEEEEeCCCCCccccchhHh-CCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccc-cCCCCCCEEE
Q 016905           77 NVISLTLGSNGFSGKISPSIT-KLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATW-SQLSNLKHLD  154 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~-~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~-~~l~~L~~L~  154 (380)
                      ++.+|+|++|.++- |. .++ .+.+|+.|+||+|.++ .++ .+..+++|++|+|++|+++ .++..+ ..+++|+.|+
T Consensus        20 ~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred             cccccccccccccc-cc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence            68889999999984 32 455 5789999999999998 454 4778999999999999999 676555 3689999999


Q ss_pred             CcCCcccccCc----cccccccccccCCCcc
Q 016905          155 LSSNNLTGRIP----MQLFSVATFNFTGTHL  181 (380)
Q Consensus       155 ls~N~l~g~~p----~~~~~~~~~~~~gN~~  181 (380)
                      +++|++...--    ..+.++..+++.|||.
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence            99999974211    1234456677888875

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.79  E-value=1.3e-09  Score=110.91  Aligned_cols=110  Identities=30%  Similarity=0.442  Sum_probs=92.0

Q ss_pred             ceeeEecCCCEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCC
Q 016905           68 WSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQL  147 (380)
Q Consensus        68 w~gv~c~~~~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l  147 (380)
                      |.-+.|- .+|..|+|++|+|+..-...+.++..|+.|+||+|+|+ .+|+.+..++.|++|..-+|++. ..| .+.++
T Consensus       376 ~p~l~~~-~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l  451 (1081)
T KOG0618|consen  376 FPVLVNF-KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQL  451 (1081)
T ss_pred             hhhhccc-cceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhc
Confidence            4444433 27999999999998444455889999999999999999 89999999999999999999999 899 89999


Q ss_pred             CCCCEEECcCCcccc-cCcccc--ccccccccCCCcc
Q 016905          148 SNLKHLDLSSNNLTG-RIPMQL--FSVATFNFTGTHL  181 (380)
Q Consensus       148 ~~L~~L~ls~N~l~g-~~p~~~--~~~~~~~~~gN~~  181 (380)
                      +.|+.+|+|.|+|+- .+|...  .++.-++++||+.
T Consensus       452 ~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  452 PQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             CcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            999999999999983 444433  3667788999985

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=98.78  E-value=5.2e-09  Score=93.43  Aligned_cols=111  Identities=13%  Similarity=0.058  Sum_probs=85.5

Q ss_pred             HhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCch--HH------HHHHHHHHHhcCcCCCCccceeeeeCC
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGG--EA------AFQREVHLISVAIHKNLLQLIGYCTTS  340 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~--~~------~f~~e~~~l~~l~H~Niv~l~g~~~~~  340 (380)
                      ...+|+..+++|+|+||.||.... ++..+|||.+.+......  ..      .|.+|+..+.+++|++|..+..++...
T Consensus        29 l~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~  107 (232)
T PRK10359         29 LSYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLA  107 (232)
T ss_pred             hhCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeec
Confidence            467899999999999999998655 677899999974332211  12      268999999999999999999885532


Q ss_pred             --------CceeEEeecccCCChhhhcccc-cccceeeeeecceeeecC
Q 016905          341 --------SERILVYPFMQNLSVAYRLRVS-HKIYTKIISLSSLHCFSL  380 (380)
Q Consensus       341 --------~~~~lV~Ey~~~GsL~~~L~~~-~~~~~~~~aL~yLH~~~i  380 (380)
                              +..+|||||+++.+|.++.... ....++..++..+|+.|+
T Consensus       108 ~~~~~~~~~~~~lvmEyi~G~tL~~~~~~~~~~~~~i~~~l~~lH~~gi  156 (232)
T PRK10359        108 ERKTLRYAHTYIMLIEYIEGVELNDMPEISEDVKAKIKASIESLHQHGM  156 (232)
T ss_pred             ccccccccCCeEEEEEEECCccHHHhhhccHHHHHHHHHHHHHHHHcCC
Confidence                    3578999999999998875321 123468889999998875

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.78  E-value=1.6e-09  Score=106.07  Aligned_cols=90  Identities=37%  Similarity=0.558  Sum_probs=62.9

Q ss_pred             CEEEEEeCCCCCccccc-hhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCcccc------------------
Q 016905           77 NVISLTLGSNGFSGKIS-PSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFS------------------  137 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p-~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~------------------  137 (380)
                      +...|+||+|++. +|| +-|.+|+.|-+||||+|+|. .+|+++.+|..|++|+||+|.|.                  
T Consensus       127 n~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm  204 (1255)
T KOG0444|consen  127 NSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM  204 (1255)
T ss_pred             CcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence            5667777777776 444 44667777788888888877 77777777777888887777542                  


Q ss_pred             -------ccCCccccCCCCCCEEECcCCcccccCccccc
Q 016905          138 -------GSIPATWSQLSNLKHLDLSSNNLTGRIPMQLF  169 (380)
Q Consensus       138 -------g~iP~~~~~l~~L~~L~ls~N~l~g~~p~~~~  169 (380)
                             .-||.++..|.+|..+|+|.|+|. .+|..+.
T Consensus       205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly  242 (1255)
T KOG0444|consen  205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY  242 (1255)
T ss_pred             ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh
Confidence                   246677777777777777777776 5555443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.77  E-value=3.1e-10  Score=94.40  Aligned_cols=83  Identities=30%  Similarity=0.468  Sum_probs=47.7

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccc-cCCccccCCCCCCEEEC
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSG-SIPATWSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g-~iP~~~~~l~~L~~L~l  155 (380)
                      ++..|++++|++. .+|.+++.++.|+.|+++-|++. .+|..||.++.|+.|||+.|+|+. .+|..|..+..|+.|+|
T Consensus        57 nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl  134 (264)
T KOG0617|consen   57 NLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYL  134 (264)
T ss_pred             hhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHh
Confidence            4555666666665 55666666666666666666665 566666666666666666665542 24444444444444444


Q ss_pred             cCCccc
Q 016905          156 SSNNLT  161 (380)
Q Consensus       156 s~N~l~  161 (380)
                      +.|.|.
T Consensus       135 ~dndfe  140 (264)
T KOG0617|consen  135 GDNDFE  140 (264)
T ss_pred             cCCCcc
Confidence            444444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.76  E-value=1.3e-09  Score=106.70  Aligned_cols=82  Identities=29%  Similarity=0.439  Sum_probs=57.9

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChh-hhCCcccCeeeccCccccccCCccccCCCCCCEEEC
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDF-LGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~-~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~l  155 (380)
                      -|+.||||.|.|+ +.|..+...+++-+|+||+|++. +||.. +-+|+-|-.||||+|+|. .+|+.+..|..|+.|+|
T Consensus       104 dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~L  180 (1255)
T KOG0444|consen  104 DLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKL  180 (1255)
T ss_pred             cceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhc
Confidence            4667777777776 66777777777777777777776 55543 456777777777777777 67777777777777777


Q ss_pred             cCCccc
Q 016905          156 SSNNLT  161 (380)
Q Consensus       156 s~N~l~  161 (380)
                      |+|.|.
T Consensus       181 s~NPL~  186 (1255)
T KOG0444|consen  181 SNNPLN  186 (1255)
T ss_pred             CCChhh
Confidence            777664

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.75  E-value=8.2e-11  Score=103.41  Aligned_cols=107  Identities=26%  Similarity=0.390  Sum_probs=83.0

Q ss_pred             cccccccccCCCeeEEEEEe-CCCcEEEEEEec-ccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCC--------Cc
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQ-DYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS--------SE  342 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~-~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~--------~~  342 (380)
                      |....+||+|.||.||+|+. .+|+.||+|++- +....+-...-.+|++++..++|+|++.++..|...        ..
T Consensus        19 yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r~t   98 (376)
T KOG0669|consen   19 YEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDRAT   98 (376)
T ss_pred             HHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccccce
Confidence            44457799999999999998 557889998764 323333445568999999999999999999988642        34


Q ss_pred             eeEEeecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      .++|+++++. +|...|......          ..+..||.|+|++.|
T Consensus        99 ~ylVf~~ceh-DLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~iHr~ki  145 (376)
T KOG0669|consen   99 FYLVFDFCEH-DLAGLLSNRKVRFSLSEIKKVMKGLMNGLYYIHRNKI  145 (376)
T ss_pred             eeeeHHHhhh-hHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHhhH
Confidence            7999999987 899888755332          238889999998654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.75  E-value=2e-09  Score=104.75  Aligned_cols=85  Identities=26%  Similarity=0.347  Sum_probs=46.2

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCc---cccCCCCCCEE
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPA---TWSQLSNLKHL  153 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~---~~~~l~~L~~L  153 (380)
                      +|..|+|++|+++..-+.+|..|..|+.|+|++|.++-.--..|..+++|++|||++|.|++.|-+   .|..|++|+.|
T Consensus       318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL  397 (873)
T KOG4194|consen  318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL  397 (873)
T ss_pred             cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence            556666666666655555555555555555555555433333444555555555555555555543   24445555555


Q ss_pred             ECcCCccc
Q 016905          154 DLSSNNLT  161 (380)
Q Consensus       154 ~ls~N~l~  161 (380)
                      +|.+|++.
T Consensus       398 ~l~gNqlk  405 (873)
T KOG4194|consen  398 RLTGNQLK  405 (873)
T ss_pred             eecCceee
Confidence            55555554

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=98.74  E-value=8.6e-10  Score=98.02  Aligned_cols=102  Identities=16%  Similarity=0.298  Sum_probs=84.2

Q ss_pred             ccccccCCCeeEEEEEeCCCcEEEEEEec-ccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCCC
Q 016905          276 SNIIGQGGFGKVYKGVLSDNTKVAVKRLQ-DYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLS  354 (380)
Q Consensus       276 ~~~lg~G~~g~Vy~~~~~~g~~vavK~l~-~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~Gs  354 (380)
                      ..+|.+...|+.|+|++ .|..+++|++. ...+....++|..|...++-+.||||++++|.|..+....++..|||.||
T Consensus       195 ~tkl~e~hsgelwrgrw-qgndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~gs  273 (448)
T KOG0195|consen  195 ITKLAESHSGELWRGRW-QGNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPFGS  273 (448)
T ss_pred             hhhhccCCCcccccccc-cCcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccchH
Confidence            34578888999999999 55566677775 23344567889999999999999999999999999999999999999999


Q ss_pred             hhhhccccccc-----------ceeeeeecceeee
Q 016905          355 VAYRLRVSHKI-----------YTKIISLSSLHCF  378 (380)
Q Consensus       355 L~~~L~~~~~~-----------~~~~~aL~yLH~~  378 (380)
                      |+..||+....           .++..|.+|||+.
T Consensus       274 lynvlhe~t~vvvd~sqav~faldiargmaflhsl  308 (448)
T KOG0195|consen  274 LYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSL  308 (448)
T ss_pred             HHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhc
Confidence            99999976443           2288899999974

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.73  E-value=1.2e-08  Score=66.19  Aligned_cols=40  Identities=43%  Similarity=0.869  Sum_probs=30.7

Q ss_pred             chHHHHHHHHHHhcC-CCCCCCCCCCCCC-CCCCCCceeeEec
Q 016905           34 DVEGEALIEVLKALN-DTHGQFTDWNDHF-VSPCFSWSHVTCR   74 (380)
Q Consensus        34 ~~~~~~l~~~~~~~~-~~~~~l~~w~~~~-~~~c~~w~gv~c~   74 (380)
                      +.|++||++||+++. ++.+.+.+|+... .+|| +|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C-~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPC-SWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CC-CSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCe-eeccEEeC
Confidence            579999999999999 5778999999764 6888 89999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=98.72  E-value=2.4e-09  Score=101.33  Aligned_cols=110  Identities=20%  Similarity=0.280  Sum_probs=91.4

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      +.|+.-++||+|+||.||-+.. .+|+.+|.|++....  ..+...--.+|-.++.+++.+.||.+--.+.+++..++|+
T Consensus       185 n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LClVL  264 (591)
T KOG0986|consen  185 NTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCLVL  264 (591)
T ss_pred             cceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEEEE
Confidence            4577789999999999999987 679999999986322  2334556789999999999999999988888899999999


Q ss_pred             ecccCCChhhhcccccc--c---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHK--I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~--~---------~~~~~aL~yLH~~~i  380 (380)
                      ..|.+|||.-+|.....  .         .+++.||+.||+.+|
T Consensus       265 tlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~i  308 (591)
T KOG0986|consen  265 TLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRRI  308 (591)
T ss_pred             EeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcce
Confidence            99999999999986542  1         349999999998775

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=98.71  E-value=1.2e-08  Score=89.75  Aligned_cols=105  Identities=15%  Similarity=0.110  Sum_probs=75.6

Q ss_pred             CcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCC---------------------chHHHHHHHHHHHhcCcCCC-
Q 016905          272 NFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSP---------------------GGEAAFQREVHLISVAIHKN-  329 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~---------------------~~~~~f~~e~~~l~~l~H~N-  329 (380)
                      .|...+.||+|+||.||++..++|+.||||++......                     .....+..|...+..+.|++ 
T Consensus        16 ~~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   95 (198)
T cd05144          16 VESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGF   95 (198)
T ss_pred             hhhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCC
Confidence            36667899999999999999888999999987532100                     01123678899999998884 


Q ss_pred             -CccceeeeeCCCceeEEeecccCCChhhhcc-cc--cccceeeeeecceeeecC
Q 016905          330 -LLQLIGYCTTSSERILVYPFMQNLSVAYRLR-VS--HKIYTKIISLSSLHCFSL  380 (380)
Q Consensus       330 -iv~l~g~~~~~~~~~lV~Ey~~~GsL~~~L~-~~--~~~~~~~~aL~yLH~~~i  380 (380)
                       +++.++.    ...++||||+++++|.+... ..  ....+++.++.++|+.+|
T Consensus        96 ~v~~~~~~----~~~~lv~e~~~g~~L~~~~~~~~~~~~~~~i~~~l~~lh~~gi  146 (198)
T cd05144          96 PVPKPIDW----NRHAVVMEYIDGVELYRVRVLEDPEEVLDEILEEIVKAYKHGI  146 (198)
T ss_pred             CCCceeec----CCceEEEEEeCCcchhhccccccHHHHHHHHHHHHHHHHHCCC
Confidence             4444432    34689999999999987754 11  122457888899998775

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.71  E-value=1.4e-09  Score=105.83  Aligned_cols=90  Identities=26%  Similarity=0.275  Sum_probs=68.8

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      .|..|+||+|.+....+.++.-.++|.+|+||+|+++.--|..|..|..|++|+||+|+++-.--..|..+++|+.|||+
T Consensus       294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr  373 (873)
T KOG4194|consen  294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR  373 (873)
T ss_pred             hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence            46667777777777777777777778888888888776666677777778888888888774444567788889999999


Q ss_pred             CCcccccCcc
Q 016905          157 SNNLTGRIPM  166 (380)
Q Consensus       157 ~N~l~g~~p~  166 (380)
                      +|.+++.|-+
T Consensus       374 ~N~ls~~IED  383 (873)
T KOG4194|consen  374 SNELSWCIED  383 (873)
T ss_pred             CCeEEEEEec
Confidence            9998876653

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=98.69  E-value=4.9e-09  Score=98.35  Aligned_cols=112  Identities=19%  Similarity=0.301  Sum_probs=93.1

Q ss_pred             HHHHhcCcccccccccCCCeeEEEEEe-C---CCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCC
Q 016905          266 LQLATDNFSESNIIGQGGFGKVYKGVL-S---DNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTS  340 (380)
Q Consensus       266 l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~---~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~  340 (380)
                      +....+.|...++||+|.|++||++++ .   ..+.||+|.+....   ......+|+++|.++ -+.||+++.++....
T Consensus        31 ~p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts---~p~ri~~El~~L~~~gG~~ni~~~~~~~rnn  107 (418)
T KOG1167|consen   31 IPFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTS---SPSRILNELEMLYRLGGSDNIIKLNGCFRNN  107 (418)
T ss_pred             hhhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeeccccc---CchHHHHHHHHHHHhccchhhhcchhhhccC
Confidence            334556788899999999999999998 3   46799999995432   345688999999999 499999999999999


Q ss_pred             CceeEEeecccCCChhhhcccc------cccceeeeeecceeeecC
Q 016905          341 SERILVYPFMQNLSVAYRLRVS------HKIYTKIISLSSLHCFSL  380 (380)
Q Consensus       341 ~~~~lV~Ey~~~GsL~~~L~~~------~~~~~~~~aL~yLH~~~i  380 (380)
                      +...+|+||++.-+-.+++..-      ...+.++.||+++|+.||
T Consensus       108 d~v~ivlp~~~H~~f~~l~~~l~~~~i~~Yl~~ll~Al~~~h~~GI  153 (418)
T KOG1167|consen  108 DQVAIVLPYFEHDRFRDLYRSLSLAEIRWYLRNLLKALAHLHKNGI  153 (418)
T ss_pred             CeeEEEecccCccCHHHHHhcCCHHHHHHHHHHHHHHhhhhhccCc
Confidence            9999999999998888887643      233569999999999987

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.68  E-value=1.3e-09  Score=97.02  Aligned_cols=106  Identities=22%  Similarity=0.337  Sum_probs=84.2

Q ss_pred             ccccccccCCCeeEEEEEe-CCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCC-----CceeEE
Q 016905          274 SESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS-----SERILV  346 (380)
Q Consensus       274 ~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~-----~~~~lV  346 (380)
                      +..+.||-|+||.||..+. ++|+.||.|++... ..-...+.+.+|+.++..++|.|++..++.-...     .+.|++
T Consensus        56 ~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV~  135 (449)
T KOG0664|consen   56 QPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYVL  135 (449)
T ss_pred             CCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHHH
Confidence            3467899999999999998 67999999998532 1223467889999999999999999998876543     367899


Q ss_pred             eecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +|.|.. +|...|-.....         .+++.||.|||+.+|
T Consensus       136 TELmQS-DLHKIIVSPQ~Ls~DHvKVFlYQILRGLKYLHsA~I  177 (449)
T KOG0664|consen  136 TELMQS-DLHKIIVSPQALTPDHVKVFVYQILRGLKYLHTANI  177 (449)
T ss_pred             HHHHHh-hhhheeccCCCCCcchhhhhHHHHHhhhHHHhhcch
Confidence            999965 898887543332         459999999999886

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.67  E-value=3.5e-09  Score=99.13  Aligned_cols=111  Identities=20%  Similarity=0.233  Sum_probs=87.0

Q ss_pred             hcCcccccccccCCCeeEEEEEeC-CCcEEEEEEecccCCC--chHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYYSP--GGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~--~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~l  345 (380)
                      ..+|....+||+|+||.|..|.-+ +.+.+|||+++.+.-.  .+.+--+.|-++|+-- +-|.++++..++.+.+..|.
T Consensus       348 ~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLyF  427 (683)
T KOG0696|consen  348 ATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLYF  427 (683)
T ss_pred             ecccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhheee
Confidence            346788899999999999999873 3568999999743221  1223335677777655 67889999999999999999


Q ss_pred             EeecccCCChhhhcccccccc---------eeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHKIY---------TKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~~~---------~~~~aL~yLH~~~i  380 (380)
                      ||||+.+|+|.-+++.-+...         +++.||=+||++||
T Consensus       428 VMEyvnGGDLMyhiQQ~GkFKEp~AvFYAaEiaigLFFLh~kgI  471 (683)
T KOG0696|consen  428 VMEYVNGGDLMYHIQQVGKFKEPVAVFYAAEIAIGLFFLHSKGI  471 (683)
T ss_pred             EEEEecCchhhhHHHHhcccCCchhhhhhHHHHHHhhhhhcCCe
Confidence            999999999999988654443         38889999999987

>smart00090 RIO RIO-like kinase

Probab=98.66  E-value=3.1e-08  Score=89.66  Aligned_cols=104  Identities=13%  Similarity=0.036  Sum_probs=73.7

Q ss_pred             CcccccccccCCCeeEEEEE--eCCCcEEEEEEecccCCC-------------------c----hHHHHHHHHHHHhcCc
Q 016905          272 NFSESNIIGQGGFGKVYKGV--LSDNTKVAVKRLQDYYSP-------------------G----GEAAFQREVHLISVAI  326 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~--~~~g~~vavK~l~~~~~~-------------------~----~~~~f~~e~~~l~~l~  326 (380)
                      .|+..+.||+|+||.||+|+  ..+|+.||+|.+......                   .    ....+..|.+.+.++.
T Consensus        29 ~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~  108 (237)
T smart00090       29 LSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLY  108 (237)
T ss_pred             hHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            36667889999999999998  478999999998632110                   0    0123568999999997


Q ss_pred             CCC--CccceeeeeCCCceeEEeecccCCChhhhccccc---------ccceeeeeecceeeec
Q 016905          327 HKN--LLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSH---------KIYTKIISLSSLHCFS  379 (380)
Q Consensus       327 H~N--iv~l~g~~~~~~~~~lV~Ey~~~GsL~~~L~~~~---------~~~~~~~aL~yLH~~~  379 (380)
                      |..  +.+++++    ...++||||+++++|..+.....         ...+++.++.|||+.|
T Consensus       109 ~~~i~~p~~~~~----~~~~lV~E~~~g~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~g  168 (237)
T smart00090      109 EAGVPVPKPIAW----RRNVLVMEFIGGDGLPAPRLKDVEPEEEEEFELYDDILEEMRKLYKEG  168 (237)
T ss_pred             hcCCCCCeeeEe----cCceEEEEEecCCcccccccccCCcchHHHHHHHHHHHHHHHHHHhcC
Confidence            643  3333432    23589999999988876652211         1234889999999987

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=1e-08  Score=107.28  Aligned_cols=82  Identities=26%  Similarity=0.333  Sum_probs=66.2

Q ss_pred             HHHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeE
Q 016905          267 QLATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       267 ~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~l  345 (380)
                      .+...+|++..+||+|+||.|||++. -||+.+|||+|.-..+........+|+.++++++|||||+++..+.+.....-
T Consensus       475 SRY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~~~  554 (1351)
T KOG1035|consen  475 SRYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAELT  554 (1351)
T ss_pred             hhHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCccc
Confidence            34667899999999999999999997 58999999999743344445667899999999999999999988776554444


Q ss_pred             Eee
Q 016905          346 VYP  348 (380)
Q Consensus       346 V~E  348 (380)
                      ++|
T Consensus       555 ~~e  557 (1351)
T KOG1035|consen  555 VLE  557 (1351)
T ss_pred             ccc
Confidence            444

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.64  E-value=7.2e-09  Score=101.71  Aligned_cols=110  Identities=16%  Similarity=0.145  Sum_probs=91.0

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc--CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY--YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~--~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      ..-|...+.||-|+||+|..+.- ++...+|+|.+++.  .......-...|-++|++.+.+=||+|+-.+.+++.+|+|
T Consensus       628 KSmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFV  707 (1034)
T KOG0608|consen  628 KSMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFV  707 (1034)
T ss_pred             ccceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEE
Confidence            34577788999999999998876 55778999998632  1223445567899999999999999999999999999999


Q ss_pred             eecccCCChhhhcccccccce---------eeeeecceeeec
Q 016905          347 YPFMQNLSVAYRLRVSHKIYT---------KIISLSSLHCFS  379 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~~~---------~~~aL~yLH~~~  379 (380)
                      |||+++|++..+|-+.+...+         +..|++|.|+||
T Consensus       708 MdYIPGGDmMSLLIrmgIFeE~LARFYIAEltcAiesVHkmG  749 (1034)
T KOG0608|consen  708 MDYIPGGDMMSLLIRMGIFEEDLARFYIAELTCAIESVHKMG  749 (1034)
T ss_pred             EeccCCccHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999976655533         777999999998

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=98.63  E-value=1e-08  Score=103.47  Aligned_cols=103  Identities=25%  Similarity=0.316  Sum_probs=82.5

Q ss_pred             CcccccccccCCCe-eEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeEEeec
Q 016905          272 NFSESNIIGQGGFG-KVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       272 ~~~~~~~lg~G~~g-~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      -|...+++|.|+.| .||+|.+ .|+.||||++-.    ...+-..+|+..+..- .|||||++++.-.++...||..|.
T Consensus       510 ~~~~~eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~----e~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalEL  584 (903)
T KOG1027|consen  510 FFSPKEILGYGSNGTVVFRGVY-EGREVAVKRLLE----EFFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALEL  584 (903)
T ss_pred             eeccHHHcccCCCCcEEEEEee-CCceehHHHHhh----HhHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehH
Confidence            35567789999887 5799999 788999999832    2344557999999887 699999998887788889999999


Q ss_pred             ccCCChhhhcccccc-------------cceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHK-------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~-------------~~~~~~aL~yLH~~~i  380 (380)
                      |.. +|.+++.....             ..++..||++||+.+|
T Consensus       585 C~~-sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl~i  627 (903)
T KOG1027|consen  585 CAC-SLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSLKI  627 (903)
T ss_pred             hhh-hHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhccc
Confidence            976 99999976311             1338889999999876

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.61  E-value=4.9e-08  Score=83.59  Aligned_cols=82  Identities=29%  Similarity=0.426  Sum_probs=41.4

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhh-hCCcccCeeeccCccccccCC--ccccCCCCCCEE
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFL-GSMTHLQSLNLANNKFSGSIP--ATWSQLSNLKHL  153 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~-~~l~~L~~l~Ls~N~l~g~iP--~~~~~l~~L~~L  153 (380)
                      ++..|+|++|.++.. + .+..++.|+.|+|++|.++ .+++.+ ..+++|+.|+|++|++.. +-  ..+..+++|+.|
T Consensus        43 ~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~-l~~l~~L~~l~~L~~L  118 (175)
T PF14580_consen   43 KLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISD-LNELEPLSSLPKLRVL  118 (175)
T ss_dssp             T--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---S-CCCCGGGGG-TT--EE
T ss_pred             CCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCC-hHHhHHHHcCCCccee
Confidence            799999999999954 3 4888999999999999999 566555 469999999999999973 32  357789999999


Q ss_pred             ECcCCcccc
Q 016905          154 DLSSNNLTG  162 (380)
Q Consensus       154 ~ls~N~l~g  162 (380)
                      +|.+|.++.
T Consensus       119 ~L~~NPv~~  127 (175)
T PF14580_consen  119 SLEGNPVCE  127 (175)
T ss_dssp             E-TT-GGGG
T ss_pred             eccCCcccc
Confidence            999999873

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.61  E-value=2.4e-08  Score=103.58  Aligned_cols=66  Identities=27%  Similarity=0.387  Sum_probs=41.8

Q ss_pred             cCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECcCCcccccCccccccc
Q 016905          101 FLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSV  171 (380)
Q Consensus       101 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~  171 (380)
                      +|+.|+|++|+|+ .+|..   ..+|+.|+|++|+|+ .||.++.++++|+.|+|++|+|+|.+|..+..+
T Consensus       403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence            4455555555555 24432   234566677777776 677777777777777777777777777666443

>PHA02882 putative serine/threonine kinase; Provisional

Probab=98.60  E-value=4.6e-08  Score=91.42  Aligned_cols=109  Identities=15%  Similarity=0.144  Sum_probs=71.1

Q ss_pred             cCcccccccccCCCeeEEEEEeCC----CcEEEEEEecccCCCch----------HHHHHHHHHHHhcCcCCCCccceee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLSD----NTKVAVKRLQDYYSPGG----------EAAFQREVHLISVAIHKNLLQLIGY  336 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~~----g~~vavK~l~~~~~~~~----------~~~f~~e~~~l~~l~H~Niv~l~g~  336 (380)
                      +.|...++||+|+||.||+|...+    +..+|+|..........          ......+...+..+.|+|+++++++
T Consensus        12 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~   91 (294)
T PHA02882         12 KEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGC   91 (294)
T ss_pred             CceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEe
Confidence            467888999999999999999843    34666665431111100          1112234445667799999999997


Q ss_pred             eeCCC----ceeEEeecccCCChhhhccccc---------ccceeeeeecceeeecC
Q 016905          337 CTTSS----ERILVYPFMQNLSVAYRLRVSH---------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       337 ~~~~~----~~~lV~Ey~~~GsL~~~L~~~~---------~~~~~~~aL~yLH~~~i  380 (380)
                      +....    ..++++|++.. ++.+.+....         ...+++.||+|||+.+|
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i  147 (294)
T PHA02882         92 GSFKRCRMYYRFILLEKLVE-NTKEIFKRIKCKNKKLIKNIMKDMLTTLEYIHEHGI  147 (294)
T ss_pred             eeEecCCceEEEEEEehhcc-CHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            66543    34678887743 5655554322         23458999999999875

>PRK12274 serine/threonine protein kinase; Provisional

Probab=98.55  E-value=7.1e-08  Score=84.65  Aligned_cols=101  Identities=13%  Similarity=0.035  Sum_probs=75.1

Q ss_pred             cccccccCCCeeEEEEEeCCCcEEEEEEecccCC---CchHHHHHHHHHHHhcCc-CCCCccceeeeeCCCceeEEeecc
Q 016905          275 ESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYS---PGGEAAFQREVHLISVAI-HKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       275 ~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~---~~~~~~f~~e~~~l~~l~-H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      ....|++|+||+||.+.- ++..++.+.+....-   .-....|.+|+++|.+++ |+++++++++    +..+++|||+
T Consensus         6 ~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvmeyI   80 (218)
T PRK12274          6 VNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDRSYL   80 (218)
T ss_pred             cceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEeee
Confidence            467899999999996654 677888777753211   011235889999999995 5889999886    3479999999


Q ss_pred             cCCChhhhccccc--ccceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSH--KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~--~~~~~~~aL~yLH~~~i  380 (380)
                      ++.+|.+.+....  ...++..+|+|+|+.||
T Consensus        81 ~G~~L~~~~~~~~~~~~~qi~~~L~~lH~~GI  112 (218)
T PRK12274         81 AGAAMYQRPPRGDLAYFRAARRLLQQLHRCGV  112 (218)
T ss_pred             cCccHHhhhhhhhHHHHHHHHHHHHHHHHCcC
Confidence            9999987653221  23457889999999886

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=98.54  E-value=2.9e-08  Score=88.47  Aligned_cols=108  Identities=19%  Similarity=0.280  Sum_probs=84.2

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceee-eeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGY-CTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~-~~~~~~~~lV~  347 (380)
                      +.|.....+|+|.||.+..+.+ ...+.+++|-+.....  ..++|.+|..---.+ .|.||+.-+++ +...+..+.++
T Consensus        24 d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~t--t~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~q  101 (378)
T KOG1345|consen   24 DVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQT--TQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQ  101 (378)
T ss_pred             hhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcchh--hHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEee
Confidence            3456678899999999999999 4577899998864433  368899998655455 69999987765 44566778999


Q ss_pred             ecccCCChhhhccccccc--------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI--------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~--------~~~~~aL~yLH~~~i  380 (380)
                      ||+|.|||.+-+...+..        .++++|+.|+|+++|
T Consensus       102 E~aP~gdL~snv~~~GigE~~~K~v~~ql~SAi~fMHsknl  142 (378)
T KOG1345|consen  102 EFAPRGDLRSNVEAAGIGEANTKKVFAQLLSAIEFMHSKNL  142 (378)
T ss_pred             ccCccchhhhhcCcccccHHHHHHHHHHHHHHHHHhhccch
Confidence            999999999888654332        458999999999875

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=98.52  E-value=4.5e-09  Score=100.74  Aligned_cols=109  Identities=15%  Similarity=0.133  Sum_probs=89.5

Q ss_pred             CcccccccccCCCeeEEEEEeCCC-cEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          272 NFSESNIIGQGGFGKVYKGVLSDN-TKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~~~g-~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      +++....||-|+||.|=....... ..+|+|.+++..  +....+-...|-.+|...+.|.||+++--+.+.+..|++||
T Consensus       421 dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmLmE  500 (732)
T KOG0614|consen  421 DLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYMLME  500 (732)
T ss_pred             hhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhhhHH
Confidence            444556799999999998887443 358999886322  22334557789999999999999999999999999999999


Q ss_pred             cccCCChhhhcccccccce---------eeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKIYT---------KIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~~~---------~~~aL~yLH~~~i  380 (380)
                      -|-+|.|...|++++...+         +++|++|||++||
T Consensus       501 aClGGElWTiLrdRg~Fdd~tarF~~acv~EAfeYLH~k~i  541 (732)
T KOG0614|consen  501 ACLGGELWTILRDRGSFDDYTARFYVACVLEAFEYLHRKGI  541 (732)
T ss_pred             hhcCchhhhhhhhcCCcccchhhhhHHHHHHHHHHHHhcCc
Confidence            9999999999998766544         8899999999987

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.52  E-value=1.2e-08  Score=95.08  Aligned_cols=94  Identities=27%  Similarity=0.367  Sum_probs=80.2

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCee-eccCccccccCC-ccccCCCCCCEEE
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSL-NLANNKFSGSIP-ATWSQLSNLKHLD  154 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l-~Ls~N~l~g~iP-~~~~~l~~L~~L~  154 (380)
                      ..++|+|..|.++-.-|.+|+.+++|+.||||+|+|+-.-|+.|..+++|.+| ++++|+++ .+| ..|++|.+|+.|.
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence            57889999999998878889999999999999999999999999999999876 55559999 666 4799999999999


Q ss_pred             CcCCcccccCccccccc
Q 016905          155 LSSNNLTGRIPMQLFSV  171 (380)
Q Consensus       155 ls~N~l~g~~p~~~~~~  171 (380)
                      +.-|++....+..+..+
T Consensus       147 lNan~i~Cir~~al~dL  163 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDL  163 (498)
T ss_pred             cChhhhcchhHHHHHHh
Confidence            99999886555444333

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.47  E-value=1.1e-07  Score=61.90  Aligned_cols=36  Identities=39%  Similarity=0.648  Sum_probs=21.0

Q ss_pred             cCCeEEcCCCcCcccCChhhhCCcccCeeeccCcccc
Q 016905          101 FLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFS  137 (380)
Q Consensus       101 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~  137 (380)
                      +|++|+|++|+|+ .+|+.+++|++|+.|+|++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            5566666666666 45555666666666666666665

...

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.47  E-value=8.8e-08  Score=91.62  Aligned_cols=106  Identities=16%  Similarity=0.189  Sum_probs=83.4

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCc-----CC---CCccceeeeeC-
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI-----HK---NLLQLIGYCTT-  339 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~-----H~---Niv~l~g~~~~-  339 (380)
                      ...|...++||-|.|++||.+.. .+.+.||+|+.+.  .+.-.+.-..||.+|.+++     |+   .||+|+.++.. 
T Consensus        77 ~gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKS--AqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~Fkhs  154 (590)
T KOG1290|consen   77 GGRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKS--AQHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHS  154 (590)
T ss_pred             CceEEEEEeccccccceeEEEeeccCCeEEEEEEEeh--hhHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceec
Confidence            35677889999999999999987 5678999999853  2334566789999999874     33   59999998864 


Q ss_pred             ---CCceeEEeecccCCChhhhcccc-----------cccceeeeeecceeee
Q 016905          340 ---SSERILVYPFMQNLSVAYRLRVS-----------HKIYTKIISLSSLHCF  378 (380)
Q Consensus       340 ---~~~~~lV~Ey~~~GsL~~~L~~~-----------~~~~~~~~aL~yLH~~  378 (380)
                         +.+.+||+||+ +-+|..+|...           ...++++.||+|||..
T Consensus       155 GpNG~HVCMVfEvL-GdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~e  206 (590)
T KOG1290|consen  155 GPNGQHVCMVFEVL-GDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHRE  206 (590)
T ss_pred             CCCCcEEEEEehhh-hhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence               45789999999 55899888643           2236699999999975

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.45  E-value=3.5e-07  Score=95.34  Aligned_cols=35  Identities=14%  Similarity=0.084  Sum_probs=22.5

Q ss_pred             CCCCCchHHHHHHHHHHhcCCCCCCCCC----CCCCCCCCC
Q 016905           29 SSREPDVEGEALIEVLKALNDTHGQFTD----WNDHFVSPC   65 (380)
Q Consensus        29 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~----w~~~~~~~c   65 (380)
                      ...+..++...++++.+.+..|. .+.+    |.+. .++|
T Consensus        57 ~~~~~~~~~~~~~~~~~~l~~p~-~~~~~~~~~~~~-~~fc   95 (754)
T PRK15370         57 PETASPEEIKSKFECLRMLAFPA-YADNIQYSRGGA-DQYC   95 (754)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCc-hhhccccccCCC-Cccc
Confidence            44556677788888888887664 3444    6654 3566

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=98.43  E-value=4.7e-08  Score=83.91  Aligned_cols=111  Identities=18%  Similarity=0.221  Sum_probs=86.7

Q ss_pred             HHHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhc-CcCCCCccceeeeeCCCcee
Q 016905          267 QLATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISV-AIHKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       267 ~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~-l~H~Niv~l~g~~~~~~~~~  344 (380)
                      +.+.+.+.....||+|++|.|-+-++ .+|+..|||++......+..+....|+++..+ ...|.+|.++|.+......+
T Consensus        42 eV~ad~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvw  121 (282)
T KOG0984|consen   42 EVPADDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVW  121 (282)
T ss_pred             ccchhhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEE
Confidence            33444555567799999999988887 68999999999866566667888899987665 47999999999999999999


Q ss_pred             EEeecccCCChhhhccc----ccccc---------eeeeeecceeee
Q 016905          345 LVYPFMQNLSVAYRLRV----SHKIY---------TKIISLSSLHCF  378 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~----~~~~~---------~~~~aL~yLH~~  378 (380)
                      +.||-|+- ||..+.++    .....         .++.||.|||++
T Consensus       122 IcME~M~t-Sldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~k  167 (282)
T KOG0984|consen  122 ICMELMDT-SLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSK  167 (282)
T ss_pred             EeHHHhhh-hHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHH
Confidence            99999975 88776542    11122         288899999964

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=98.42  E-value=2e-07  Score=77.14  Aligned_cols=99  Identities=13%  Similarity=0.088  Sum_probs=76.5

Q ss_pred             ccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcC--CCCccceeeeeCCCceeEEeecccCC
Q 016905          276 SNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIH--KNLLQLIGYCTTSSERILVYPFMQNL  353 (380)
Q Consensus       276 ~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H--~Niv~l~g~~~~~~~~~lV~Ey~~~G  353 (380)
                      .+.+|+|.++.||++...+ ..+++|.......   ...+.+|+..+..++|  ..+++++++...++..+++|||++++
T Consensus         3 ~~~i~~g~~~~v~~~~~~~-~~~~iK~~~~~~~---~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~   78 (155)
T cd05120           3 IKLLKGGLTNRVYLLGTKD-EDYVLKINPSREK---GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGE   78 (155)
T ss_pred             ceecccccccceEEEEecC-CeEEEEecCCCCc---hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCe
Confidence            4679999999999999844 7899998854322   5678999999999987  48999999888888899999999998


Q ss_pred             Chhhh--cccccccceeeeeecceeee
Q 016905          354 SVAYR--LRVSHKIYTKIISLSSLHCF  378 (380)
Q Consensus       354 sL~~~--L~~~~~~~~~~~aL~yLH~~  378 (380)
                      ++..+  ........++..+++++|..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~l~~lh~~  105 (155)
T cd05120          79 TLDEVSEEEKEDIAEQLAELLAKLHQL  105 (155)
T ss_pred             ecccCCHHHHHHHHHHHHHHHHHHhCC
Confidence            88754  11112234477788888864

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=98.41  E-value=5e-08  Score=96.14  Aligned_cols=106  Identities=18%  Similarity=0.224  Sum_probs=86.6

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeEEe
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++.|.....+|.|+|+.|-++.. ++++..+||++...     ..+-.+|+.++... +||||+++.+.+..+.+.++||
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~-----~~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~  395 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKR-----ADDNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVM  395 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheecccc-----ccccccccchhhhhcCCCcceeecceecCCceeeeee
Confidence            55667777799999999999988 67899999999643     22335677666655 7999999999999999999999


Q ss_pred             ecccCCChhhhccccccc--------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI--------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~--------~~~~~aL~yLH~~~i  380 (380)
                      |++.+|-+.+.+...+..        .+++.|+.|||++|+
T Consensus       396 e~l~g~ell~ri~~~~~~~~e~~~w~~~lv~Av~~LH~~gv  436 (612)
T KOG0603|consen  396 ELLDGGELLRRIRSKPEFCSEASQWAAELVSAVDYLHEQGV  436 (612)
T ss_pred             hhccccHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcCe
Confidence            999999998888754332        458899999999885

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.39  E-value=4.9e-08  Score=78.51  Aligned_cols=87  Identities=31%  Similarity=0.489  Sum_probs=74.8

Q ss_pred             CEEEEEeCCCCCccccchhHh-CCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEEC
Q 016905           77 NVISLTLGSNGFSGKISPSIT-KLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~-~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~l  155 (380)
                      .++.++|++|.|. ..|+.|. ..+.++.|+|++|.++ .+|.++..++.|+.|+++.|.|. ..|.-+..|.+|-.||.
T Consensus        54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence            6888999999998 5566664 4569999999999999 89999999999999999999999 77888888999999999


Q ss_pred             cCCcccccCccc
Q 016905          156 SSNNLTGRIPMQ  167 (380)
Q Consensus       156 s~N~l~g~~p~~  167 (380)
                      .+|.+. +||..
T Consensus       131 ~~na~~-eid~d  141 (177)
T KOG4579|consen  131 PENARA-EIDVD  141 (177)
T ss_pred             CCCccc-cCcHH
Confidence            888876 66644

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.39  E-value=4.6e-07  Score=94.42  Aligned_cols=55  Identities=33%  Similarity=0.522  Sum_probs=28.7

Q ss_pred             cCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECcCCccc
Q 016905          101 FLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLT  161 (380)
Q Consensus       101 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~  161 (380)
                      +|+.|+|++|++. .+|..+.  .+|+.|+|++|+|+ .+|..+.  ++|+.|+|++|+|+
T Consensus       242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             cccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence            3444444444444 3444332  35566666666666 4555443  35666666666665

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.38  E-value=3.5e-07  Score=85.54  Aligned_cols=99  Identities=25%  Similarity=0.307  Sum_probs=69.7

Q ss_pred             Cccccch-hHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECcCCcccccCcc
Q 016905           88 FSGKISP-SITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPM  166 (380)
Q Consensus        88 l~g~~p~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~~p~  166 (380)
                      ..+..|. -|.+|++|+.|+|++|++++.-+..|..+..|+.|.|..|+|.-.--..|.++..|+.|+|.+|+++.--|.
T Consensus       261 ~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~  340 (498)
T KOG4237|consen  261 PDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG  340 (498)
T ss_pred             cCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc
Confidence            3444443 377778888888888888877777777778888888888877744445677777788888888887766665


Q ss_pred             ccc---cccccccCCCccccCCC
Q 016905          167 QLF---SVATFNFTGTHLICGSS  186 (380)
Q Consensus       167 ~~~---~~~~~~~~gN~~lc~~~  186 (380)
                      .+.   .++.+++.+||+.|++.
T Consensus       341 aF~~~~~l~~l~l~~Np~~CnC~  363 (498)
T KOG4237|consen  341 AFQTLFSLSTLNLLSNPFNCNCR  363 (498)
T ss_pred             cccccceeeeeehccCcccCccc
Confidence            543   34666777777777653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.36  E-value=1.4e-07  Score=89.02  Aligned_cols=104  Identities=21%  Similarity=0.331  Sum_probs=76.2

Q ss_pred             CEEEEEeCCCCCccccchhHhCCcc---CCeEEcCCCcCcc----cCChhhhCC-cccCeeeccCcccccc----CCccc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKF---LASLELQDNDLSG----TLPDFLGSM-THLQSLNLANNKFSGS----IPATW  144 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~---L~~L~Ls~N~l~g----~~p~~~~~l-~~L~~l~Ls~N~l~g~----iP~~~  144 (380)
                      +++.|+|++|.+.+..+..+..+.+   |++|++++|++++    .+...+..+ ++|+.|+|++|++++.    ++..+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            8889999999998877777777766   9999999998873    344556677 8889999999998853    34456


Q ss_pred             cCCCCCCEEECcCCccccc----Cccccc---cccccccCCCc
Q 016905          145 SQLSNLKHLDLSSNNLTGR----IPMQLF---SVATFNFTGTH  180 (380)
Q Consensus       145 ~~l~~L~~L~ls~N~l~g~----~p~~~~---~~~~~~~~gN~  180 (380)
                      ..+.+|+.|++++|.+++.    ++..+.   ++..+++.+|.
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  204 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG  204 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence            6778899999999988853    222233   45555555553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.34  E-value=3.2e-07  Score=59.68  Aligned_cols=37  Identities=38%  Similarity=0.694  Sum_probs=33.2

Q ss_pred             cccCeeeccCccccccCCccccCCCCCCEEECcCCccc
Q 016905          124 THLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLT  161 (380)
Q Consensus       124 ~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~  161 (380)
                      ++|++|+|++|+++ .+|..+++|++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            57999999999999 89989999999999999999998

...

>PLN03210 Resistant to P

Probab=98.31  E-value=1.2e-06  Score=96.63  Aligned_cols=88  Identities=23%  Similarity=0.374  Sum_probs=46.5

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+. .+|..+..+++|+.|+|++|..-+.+|. ++.+++|++|+|++|.....+|.++.++++|+.|+++
T Consensus       612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~  689 (1153)
T PLN03210        612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS  689 (1153)
T ss_pred             CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence            5555666655554 3455555555555555555543344543 4555555555555554444555555555555555555


Q ss_pred             CCcccccCcc
Q 016905          157 SNNLTGRIPM  166 (380)
Q Consensus       157 ~N~l~g~~p~  166 (380)
                      +|..-..+|.
T Consensus       690 ~c~~L~~Lp~  699 (1153)
T PLN03210        690 RCENLEILPT  699 (1153)
T ss_pred             CCCCcCccCC
Confidence            5443334443

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.29  E-value=1.9e-07  Score=95.66  Aligned_cols=86  Identities=41%  Similarity=0.563  Sum_probs=78.1

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|..|||++|.++ ..|-.+..+.+|+.|+++.|.+. .+|.+.+++.+|+.|+|.+|++. ..|.++..+.+|+.||+|
T Consensus        46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS  122 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS  122 (1081)
T ss_pred             eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence            5899999998886 78888999999999999999998 88999999999999999999999 999999999999999999


Q ss_pred             CCcccccCcc
Q 016905          157 SNNLTGRIPM  166 (380)
Q Consensus       157 ~N~l~g~~p~  166 (380)
                      .|+|. .+|.
T Consensus       123 ~N~f~-~~Pl  131 (1081)
T KOG0618|consen  123 FNHFG-PIPL  131 (1081)
T ss_pred             hhccC-CCch
Confidence            99987 6664

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.29  E-value=5.3e-07  Score=85.02  Aligned_cols=104  Identities=30%  Similarity=0.402  Sum_probs=76.5

Q ss_pred             CEEEEEeCCCCCcc----ccchhHhCC-ccCCeEEcCCCcCccc----CChhhhCCcccCeeeccCccccc----cCCcc
Q 016905           77 NVISLTLGSNGFSG----KISPSITKL-KFLASLELQDNDLSGT----LPDFLGSMTHLQSLNLANNKFSG----SIPAT  143 (380)
Q Consensus        77 ~l~~l~L~~n~l~g----~~p~~~~~l-~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~l~Ls~N~l~g----~iP~~  143 (380)
                      +++.|++++|++++    .+...+..+ ++|+.|+|++|.+++.    ++..+..+++|++|+|++|++++    .++..
T Consensus       109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~  188 (319)
T cd00116         109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG  188 (319)
T ss_pred             cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence            49999999999984    344566777 8999999999999853    44556677889999999999985    34555


Q ss_pred             ccCCCCCCEEECcCCcccccCccc-------cccccccccCCCc
Q 016905          144 WSQLSNLKHLDLSSNNLTGRIPMQ-------LFSVATFNFTGTH  180 (380)
Q Consensus       144 ~~~l~~L~~L~ls~N~l~g~~p~~-------~~~~~~~~~~gN~  180 (380)
                      +..+++|+.|+|++|.+++..+..       ..++..+++++|+
T Consensus       189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence            667789999999999887443222       2335556666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.29  E-value=9.6e-07  Score=91.86  Aligned_cols=90  Identities=23%  Similarity=0.351  Sum_probs=52.0

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +++.|+|++|+|+. +|.   .+++|++|+|++|+|+ .+|..   .++|+.|+|++|+|+ .+|..+   .+|+.|+++
T Consensus       223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~lp---~~L~~L~Ls  290 (788)
T PRK15387        223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPALP---SGLCKLWIF  290 (788)
T ss_pred             CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhch---hhcCEEECc
Confidence            56777788887774 554   2567888888888887 45643   346666666666666 444422   334455555


Q ss_pred             CCcccccCccccccccccccCCC
Q 016905          157 SNNLTGRIPMQLFSVATFNFTGT  179 (380)
Q Consensus       157 ~N~l~g~~p~~~~~~~~~~~~gN  179 (380)
                      +|+++ .+|....++..+++++|
T Consensus       291 ~N~Lt-~LP~~p~~L~~LdLS~N  312 (788)
T PRK15387        291 GNQLT-SLPVLPPGLQELSVSDN  312 (788)
T ss_pred             CCccc-cccccccccceeECCCC
Confidence            55554 33433333444444444

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=98.26  E-value=2e-07  Score=86.71  Aligned_cols=108  Identities=21%  Similarity=0.305  Sum_probs=85.8

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCc--CC----CCccceeeeeCCCc
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI--HK----NLLQLIGYCTTSSE  342 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~--H~----Niv~l~g~~~~~~~  342 (380)
                      ++.|.....+|+|.||.|-++.. +.+..||||+++.-  ..-.++-.-|++++.++.  .|    -.|++.+|+...+.
T Consensus        88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V--~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrgh  165 (415)
T KOG0671|consen   88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNV--DKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGH  165 (415)
T ss_pred             ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHH--HHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCc
Confidence            56778888999999999999987 45889999999632  223556678999999983  22    26788888999999


Q ss_pred             eeEEeecccCCChhhhccccccc-----------ceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHKI-----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~~-----------~~~~~aL~yLH~~~i  380 (380)
                      .++|+|.| +-|++++|......           .|++.+++|||+++|
T Consensus       166 iCivfell-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~kl  213 (415)
T KOG0671|consen  166 ICIVFELL-GLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDLKL  213 (415)
T ss_pred             eEEEEecc-ChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhcce
Confidence            99999988 45999999864332           469999999999865

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=98.26  E-value=1.6e-07  Score=83.84  Aligned_cols=102  Identities=18%  Similarity=0.218  Sum_probs=80.3

Q ss_pred             ccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCc-CCCCccceeeeeCCCceeEEeecccCC
Q 016905          276 SNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI-HKNLLQLIGYCTTSSERILVYPFMQNL  353 (380)
Q Consensus       276 ~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~-H~Niv~l~g~~~~~~~~~lV~Ey~~~G  353 (380)
                      ...||.|..|.|+++.. .+|...|||.+.........+.....++++..-+ .|.||+.+||+..+...++-||.|.- 
T Consensus        97 l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMelMs~-  175 (391)
T KOG0983|consen   97 LGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICMELMST-  175 (391)
T ss_pred             HHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHHHHHH-
Confidence            45699999999999998 5689999999976656666778888888887765 89999999999999999999999964 


Q ss_pred             Chhhhcccc-cccc---------eeeeeecceeee
Q 016905          354 SVAYRLRVS-HKIY---------TKIISLSSLHCF  378 (380)
Q Consensus       354 sL~~~L~~~-~~~~---------~~~~aL~yLH~~  378 (380)
                      .++.+|+.- ....         .++.||.||..+
T Consensus       176 C~ekLlkrik~piPE~ilGk~tva~v~AL~YLKeK  210 (391)
T KOG0983|consen  176 CAEKLLKRIKGPIPERILGKMTVAIVKALYYLKEK  210 (391)
T ss_pred             HHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHh
Confidence            455555432 1222         278899998654

>PLN03210 Resistant to P

Probab=98.26  E-value=1.6e-06  Score=95.58  Aligned_cols=110  Identities=18%  Similarity=0.247  Sum_probs=84.1

Q ss_pred             ceeeEecCCCEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCC
Q 016905           68 WSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQL  147 (380)
Q Consensus        68 w~gv~c~~~~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l  147 (380)
                      |.|+.+ -.+|+.|+|+++..-+.+| .++.+++|+.|+|++|..-..+|..++++++|+.|++++|...+.+|..+ ++
T Consensus       627 ~~~~~~-l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        627 WDGVHS-LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             cccccc-CCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            555432 2378888998877666777 47888899999999887767889889999999999999876666888766 78


Q ss_pred             CCCCEEECcCCcccccCccccccccccccCCCc
Q 016905          148 SNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTH  180 (380)
Q Consensus       148 ~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~gN~  180 (380)
                      ++|+.|++++|...+.+|....++..+.+.+|.
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~  736 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPDISTNISWLDLDETA  736 (1153)
T ss_pred             CCCCEEeCCCCCCccccccccCCcCeeecCCCc
Confidence            889999999887777777665566556666654

syringae 6; Provisional

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.24  E-value=4.7e-07  Score=88.31  Aligned_cols=80  Identities=28%  Similarity=0.464  Sum_probs=46.7

Q ss_pred             EEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECcC
Q 016905           78 VISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSS  157 (380)
Q Consensus        78 l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls~  157 (380)
                      +..||.+.|.+. ++|+.+++|..|+.|++..|++. .+|++++.|+ |.+||+|.|+++ .||..|.+|..|++|-|.+
T Consensus       168 l~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~Len  243 (722)
T KOG0532|consen  168 LAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLEN  243 (722)
T ss_pred             HHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeecc
Confidence            334444555444 44555555555555555555555 4555555333 666666666666 6666666666666666666


Q ss_pred             Cccc
Q 016905          158 NNLT  161 (380)
Q Consensus       158 N~l~  161 (380)
                      |.|+
T Consensus       244 NPLq  247 (722)
T KOG0532|consen  244 NPLQ  247 (722)
T ss_pred             CCCC
Confidence            6666

>cd05119 RIO RIO kinase family, catalytic domain

Probab=98.24  E-value=9.5e-07  Score=76.68  Aligned_cols=101  Identities=17%  Similarity=0.135  Sum_probs=63.4

Q ss_pred             ccccccCCCeeEEEEEeCCCcEEEEEEecccCCC-chHHH----------------------HHHHHHHHhcCcCCC--C
Q 016905          276 SNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSP-GGEAA----------------------FQREVHLISVAIHKN--L  330 (380)
Q Consensus       276 ~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~-~~~~~----------------------f~~e~~~l~~l~H~N--i  330 (380)
                      .+.||+|+||+||+|...+++.||||++...... .....                      ...|.+.+.++++..  +
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            4679999999999999888999999988632111 01111                      135566666665443  3


Q ss_pred             ccceeeeeCCCceeEEeecccCCC-----hhhhccc---ccccceeeeeecceee-ecC
Q 016905          331 LQLIGYCTTSSERILVYPFMQNLS-----VAYRLRV---SHKIYTKIISLSSLHC-FSL  380 (380)
Q Consensus       331 v~l~g~~~~~~~~~lV~Ey~~~Gs-----L~~~L~~---~~~~~~~~~aL~yLH~-~~i  380 (380)
                      .+.+++    ...++||||+++|+     |.+....   .....+++.++.++|+ .+|
T Consensus        82 ~~~~~~----~~~~lv~e~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~lh~~~~i  136 (187)
T cd05119          82 PKPIDL----NRHVLVMEFIGGDGIPAPRLKDVRLLEDPEELYDQILELMRKLYREAGL  136 (187)
T ss_pred             CceEec----CCCEEEEEEeCCCCccChhhhhhhhcccHHHHHHHHHHHHHHHhhccCc
Confidence            333332    24689999999954     4333221   1122448888899998 654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.23  E-value=3.1e-07  Score=83.10  Aligned_cols=79  Identities=28%  Similarity=0.380  Sum_probs=48.1

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      -+++||||+|.++ .|..+..-++.++.|+||+|.+. .+-. +..+++|+.||||+|.|+ ++-.+=.+|.+.+.|.|+
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence            3666777777776 56666666777777777777775 2322 666777777777777766 333333333344444444


Q ss_pred             CCc
Q 016905          157 SNN  159 (380)
Q Consensus       157 ~N~  159 (380)
                      .|.
T Consensus       361 ~N~  363 (490)
T KOG1259|consen  361 QNK  363 (490)
T ss_pred             hhh
Confidence            443

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=98.20  E-value=1.9e-06  Score=78.09  Aligned_cols=104  Identities=9%  Similarity=0.013  Sum_probs=75.9

Q ss_pred             ccccc-cCCCeeEEEEEeCCCcEEEEEEecccC------------CCchHHHHHHHHHHHhcCcCCCC--ccceeeeeCC
Q 016905          276 SNIIG-QGGFGKVYKGVLSDNTKVAVKRLQDYY------------SPGGEAAFQREVHLISVAIHKNL--LQLIGYCTTS  340 (380)
Q Consensus       276 ~~~lg-~G~~g~Vy~~~~~~g~~vavK~l~~~~------------~~~~~~~f~~e~~~l~~l~H~Ni--v~l~g~~~~~  340 (380)
                      ..+|| .|+.|+||+... .+..++||+.....            +......+.+|++++.+++|+++  ++.+++...+
T Consensus        36 ~~~lg~~~g~gtv~~v~~-~~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~  114 (239)
T PRK01723         36 ARVVGSAKGRGTTWFVQT-PGVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVR  114 (239)
T ss_pred             CceeecCCCCccEEEEEe-CCceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeee
Confidence            46788 899999999987 47789999874211            01224567899999999999885  6777775443


Q ss_pred             C-c---eeEEeecccC-CChhhhcccccc----cceeeeeecceeeecC
Q 016905          341 S-E---RILVYPFMQN-LSVAYRLRVSHK----IYTKIISLSSLHCFSL  380 (380)
Q Consensus       341 ~-~---~~lV~Ey~~~-GsL~~~L~~~~~----~~~~~~aL~yLH~~~i  380 (380)
                      . .   .++|+||+++ .+|.+++.....    ..+++.++.+||+.||
T Consensus       115 ~~~~~~~~lV~e~l~G~~~L~~~l~~~~l~~~~~~~i~~~l~~lH~~GI  163 (239)
T PRK01723        115 HGLFYRADILIERIEGARDLVALLQEAPLSEEQWQAIGQLIARFHDAGV  163 (239)
T ss_pred             cCcceeeeEEEEecCCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHCCC
Confidence            2 2   2599999997 699988764321    2348899999999886

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.20  E-value=7.9e-07  Score=86.77  Aligned_cols=100  Identities=36%  Similarity=0.614  Sum_probs=84.0

Q ss_pred             CEEEEEeCCCCCccccchhHhCCc-cCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEEC
Q 016905           77 NVISLTLGSNGFSGKISPSITKLK-FLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~-~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~l  155 (380)
                      .++.|++.+|+++ .+|+....++ +|+.|++++|++. .+|..++.+++|+.|++++|+++ .+|...+.++.|+.|++
T Consensus       117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence            5889999999998 7777888885 9999999999998 78888999999999999999999 88887778899999999


Q ss_pred             cCCcccccCccc--cc-cccccccCCCc
Q 016905          156 SSNNLTGRIPMQ--LF-SVATFNFTGTH  180 (380)
Q Consensus       156 s~N~l~g~~p~~--~~-~~~~~~~~gN~  180 (380)
                      ++|+++ .+|..  .. .+..+...+|+
T Consensus       194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         194 SGNKIS-DLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             cCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence            999998 66664  22 35666666664

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=98.18  E-value=3.2e-06  Score=78.29  Aligned_cols=105  Identities=22%  Similarity=0.322  Sum_probs=84.9

Q ss_pred             cccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCc--hHHHHHHHHHHHhcCcCC-CCccceeeeeCCCceeEEeec
Q 016905          273 FSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPG--GEAAFQREVHLISVAIHK-NLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~--~~~~f~~e~~~l~~l~H~-Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      |.....||.|+||.||++...  ..+++|.+.......  ....|.+|+.++..+.|+ +++++..++......++++||
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   79 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEY   79 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEec
Confidence            445678999999999999986  889999997443333  477899999999999988 799999999777778999999


Q ss_pred             ccCCChhhhccccc---cc---------ceeeeeecceeeec
Q 016905          350 MQNLSVAYRLRVSH---KI---------YTKIISLSSLHCFS  379 (380)
Q Consensus       350 ~~~GsL~~~L~~~~---~~---------~~~~~aL~yLH~~~  379 (380)
                      +.++++.+++....   ..         .+++.++.|+|+.+
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~~  121 (384)
T COG0515          80 VDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKG  121 (384)
T ss_pred             CCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999997776543   22         23777888999876

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.16  E-value=1.7e-07  Score=93.73  Aligned_cols=102  Identities=32%  Similarity=0.442  Sum_probs=72.4

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChh-hhCCcccCeeeccCccccccCCccccCCCCCCEEEC
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDF-LGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~-~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~l  155 (380)
                      .+..|||+.|.++..-  .+..|+.|..|||+.|.|. .+|.. ...+. |+.|+|++|.++ ++ ..+.+|.+|+.|||
T Consensus       188 ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~-tL-~gie~LksL~~LDl  261 (1096)
T KOG1859|consen  188 ALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT-TL-RGIENLKSLYGLDL  261 (1096)
T ss_pred             HhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH-hh-hhHHhhhhhhccch
Confidence            4677888888887543  6777888888888888887 55532 12333 888888888877 33 24678899999999


Q ss_pred             cCCcccccC---cc-ccccccccccCCCccccC
Q 016905          156 SSNNLTGRI---PM-QLFSVATFNFTGTHLICG  184 (380)
Q Consensus       156 s~N~l~g~~---p~-~~~~~~~~~~~gN~~lc~  184 (380)
                      |+|-|++--   |- .+..+..+.+.|||.-|.
T Consensus       262 syNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             hHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            999987632   21 234557788999998775

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.15  E-value=7.2e-07  Score=80.80  Aligned_cols=80  Identities=28%  Similarity=0.382  Sum_probs=65.8

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      .+..|+||.|++.-. . .+..|++|+.||||+|.++ .+-.-=..+.+.++|.|+.|.+. .+ ..+++|-+|..||++
T Consensus       308 kir~L~lS~N~i~~v-~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~L-SGL~KLYSLvnLDl~  382 (490)
T KOG1259|consen  308 KLRRLILSQNRIRTV-Q-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TL-SGLRKLYSLVNLDLS  382 (490)
T ss_pred             ceeEEeccccceeee-h-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hh-hhhHhhhhheecccc
Confidence            789999999999843 3 3889999999999999998 34333456788999999999987 33 347788899999999


Q ss_pred             CCccc
Q 016905          157 SNNLT  161 (380)
Q Consensus       157 ~N~l~  161 (380)
                      +|++.
T Consensus       383 ~N~Ie  387 (490)
T KOG1259|consen  383 SNQIE  387 (490)
T ss_pred             ccchh
Confidence            99986

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.15  E-value=2.4e-07  Score=90.26  Aligned_cols=100  Identities=26%  Similarity=0.484  Sum_probs=88.8

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      -|..|-+++|+++ .+|..++.+..|..||.|.|.+. .+|.+++.+.+|+.|++..|++. .+|..+..| .|..||+|
T Consensus       144 pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfS  219 (722)
T KOG0532|consen  144 PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFS  219 (722)
T ss_pred             cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecc
Confidence            5788889999998 89999999999999999999998 89999999999999999999999 899999854 68999999


Q ss_pred             CCcccccCccccccc---cccccCCCcc
Q 016905          157 SNNLTGRIPMQLFSV---ATFNFTGTHL  181 (380)
Q Consensus       157 ~N~l~g~~p~~~~~~---~~~~~~gN~~  181 (380)
                      .|+++ .||..+..+   ..+.+.+||.
T Consensus       220 cNkis-~iPv~fr~m~~Lq~l~LenNPL  246 (722)
T KOG0532|consen  220 CNKIS-YLPVDFRKMRHLQVLQLENNPL  246 (722)
T ss_pred             cCcee-ecchhhhhhhhheeeeeccCCC
Confidence            99999 899877665   4556677775

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=98.12  E-value=3.5e-06  Score=80.01  Aligned_cols=107  Identities=17%  Similarity=0.232  Sum_probs=80.2

Q ss_pred             CcccccccccCCCeeEEEEEeCCC--cEEEEEEecccCCCchHHHHHHHHHHHhcCcC----CCCccceeee-eCCCcee
Q 016905          272 NFSESNIIGQGGFGKVYKGVLSDN--TKVAVKRLQDYYSPGGEAAFQREVHLISVAIH----KNLLQLIGYC-TTSSERI  344 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~~~g--~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H----~Niv~l~g~~-~~~~~~~  344 (380)
                      .|.....||+|+||.||.+.....  ..+|+|.-......... .+..|+.++..+.+    +++.+++... ..++..+
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~-~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~   97 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPS-VLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNF   97 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCc-cchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeE
Confidence            788899999999999999997443  47888876432222222 67888988888863    5788888888 4677889


Q ss_pred             EEeecccCCChhhhccccc-cc----------ceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSH-KI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~-~~----------~~~~~aL~yLH~~~i  380 (380)
                      +||+.. +-+|.++..... ..          .+++.+|+++|+.|+
T Consensus        98 iVM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~G~  143 (322)
T KOG1164|consen   98 IVMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSKGF  143 (322)
T ss_pred             EEEecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhcCc
Confidence            999977 679999775333 11          348899999999874

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.09  E-value=6.1e-07  Score=72.30  Aligned_cols=82  Identities=28%  Similarity=0.377  Sum_probs=67.0

Q ss_pred             EEEEEeCCCCCccccch---hHhCCccCCeEEcCCCcCcccCChhhhCC-cccCeeeccCccccccCCccccCCCCCCEE
Q 016905           78 VISLTLGSNGFSGKISP---SITKLKFLASLELQDNDLSGTLPDFLGSM-THLQSLNLANNKFSGSIPATWSQLSNLKHL  153 (380)
Q Consensus        78 l~~l~L~~n~l~g~~p~---~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l-~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L  153 (380)
                      +-.++|++..+. -|+.   .+.+...|+..+||+|.|. .+|+.|... +.+++|+|++|+++ .+|..+..++.|+.|
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            345677777664 3444   4566677888899999998 777777655 58999999999999 999999999999999


Q ss_pred             ECcCCcccc
Q 016905          154 DLSSNNLTG  162 (380)
Q Consensus       154 ~ls~N~l~g  162 (380)
                      +++.|.|.-
T Consensus       106 Nl~~N~l~~  114 (177)
T KOG4579|consen  106 NLRFNPLNA  114 (177)
T ss_pred             ccccCcccc
Confidence            999999983

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=97.96  E-value=7.2e-06  Score=72.86  Aligned_cols=102  Identities=13%  Similarity=0.121  Sum_probs=75.9

Q ss_pred             cccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCC--CCccceeeeeCCC---ceeEEeeccc
Q 016905          277 NIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHK--NLLQLIGYCTTSS---ERILVYPFMQ  351 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~--Niv~l~g~~~~~~---~~~lV~Ey~~  351 (380)
                      +.++.|..+.+|++...+|..+++|.............+.+|.+++..+++.  ++.+++++....+   ..++||||++
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i~   83 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERVD   83 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEeC
Confidence            5689999999999998667899999875432222356789999999998764  4577787776542   5689999999


Q ss_pred             CCChhhhccc--------ccccceeeeeecceeee
Q 016905          352 NLSVAYRLRV--------SHKIYTKIISLSSLHCF  378 (380)
Q Consensus       352 ~GsL~~~L~~--------~~~~~~~~~aL~yLH~~  378 (380)
                      ++++.+.+..        .....++...|.+||+.
T Consensus        84 G~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~  118 (223)
T cd05154          84 GRVLRDRLLRPELSPEERRALARALADTLAALHSV  118 (223)
T ss_pred             CEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            9999887631        11134588888999875

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=97.92  E-value=4e-06  Score=88.24  Aligned_cols=109  Identities=16%  Similarity=0.228  Sum_probs=78.8

Q ss_pred             HHhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCc---CCCCccceeeeeCCCcee
Q 016905          268 LATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI---HKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       268 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~---H~Niv~l~g~~~~~~~~~  344 (380)
                      .--+.|.+...+|+|+||+||+|...+|+.||+|+=+....    =+|.--.+++.|++   -+-|..+...+...+.-+
T Consensus       695 ~~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~----WEfYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~S~  770 (974)
T KOG1166|consen  695 VGGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNP----WEFYICLQVMERLKPQMLPSIMHISSAHVFQNASV  770 (974)
T ss_pred             ecceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCc----eeeeehHHHHHhhchhhhcchHHHHHHHccCCcce
Confidence            34456777889999999999999998899999998653211    11222233344444   234455555556678889


Q ss_pred             EEeecccCCChhhhcccccccce---------eeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHKIYT---------KIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~~~~---------~~~aL~yLH~~~i  380 (380)
                      ||+||.+.|+|.+++...+.+.+         ++.-++.||.++|
T Consensus       771 lv~ey~~~Gtlld~~N~~~~m~e~lv~~~~~qml~ive~lH~~~I  815 (974)
T KOG1166|consen  771 LVSEYSPYGTLLDLINTNKVMDEYLVMFFSCQMLRIVEHLHAMGI  815 (974)
T ss_pred             eeeeccccccHHHhhccCCCCCchhhhHHHHHHHHHHHHHHhcce
Confidence            99999999999999986666544         7778889999887

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=97.87  E-value=8.9e-06  Score=71.73  Aligned_cols=106  Identities=16%  Similarity=0.257  Sum_probs=80.4

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcC-CCCccceeeeeCCCceeEEe
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIH-KNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H-~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ...|...+.||.|+||.+|.|.. .+|..||||.=+.   ........-|..+..-++| ..|..+.-|..+...-.+||
T Consensus        14 ~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~---~a~hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVM   90 (341)
T KOG1163|consen   14 GGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESS---KAKHPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVM   90 (341)
T ss_pred             ccceEEEEeecCCchhheeeeeeccCCceEEEEeecc---cCCCcchhHHHHHHHHhccCCCCchhhhhccccccceeee
Confidence            35688899999999999999997 7799999997532   2223456678888887764 45777777888888899999


Q ss_pred             ecccCCChhhhccccccc----------ceeeeeecceeeec
Q 016905          348 PFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFS  379 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~  379 (380)
                      |.. +.||.++..-....          .+++..++|+|.++
T Consensus        91 dLL-GPsLEdLfnfC~R~ftmkTvLMLaDQml~RiEyvH~r~  131 (341)
T KOG1163|consen   91 DLL-GPSLEDLFNFCSRRFTMKTVLMLADQMLSRIEYVHLRN  131 (341)
T ss_pred             ecc-CccHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHhhc
Confidence            988 67999887633222          34777888888654

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=97.87  E-value=3.1e-05  Score=76.50  Aligned_cols=85  Identities=20%  Similarity=0.196  Sum_probs=56.4

Q ss_pred             ccccccCCCeeEEEEEeCCCcEEEEEEecccCCCch---------------------------------------HHHHH
Q 016905          276 SNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGG---------------------------------------EAAFQ  316 (380)
Q Consensus       276 ~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~---------------------------------------~~~f~  316 (380)
                      .+.||.|++|+||+|++.+|+.||||+.++......                                       +-+|.
T Consensus       122 ~~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~  201 (437)
T TIGR01982       122 EKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLR  201 (437)
T ss_pred             CcceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHH
Confidence            367999999999999999999999999864311100                                       01244


Q ss_pred             HHHHHHhcCc-----CCCCccceeeeeCCCceeEEeecccCCChhhhcc
Q 016905          317 REVHLISVAI-----HKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR  360 (380)
Q Consensus       317 ~e~~~l~~l~-----H~Niv~l~g~~~~~~~~~lV~Ey~~~GsL~~~L~  360 (380)
                      +|.+.+.+++     ++++.-..-|....+..+|||||+++++|.++..
T Consensus       202 ~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~  250 (437)
T TIGR01982       202 REAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAA  250 (437)
T ss_pred             HHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHH
Confidence            5555555542     3333222222223456799999999999998865

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.84  E-value=4.9e-06  Score=81.16  Aligned_cols=82  Identities=37%  Similarity=0.588  Sum_probs=74.7

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +++.|++++|.+. .+|..++.+++|+.|++++|+++ .+|...+.+++|+.|++++|+++ .+|..+..+..|+.|+++
T Consensus       141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~  217 (394)
T COG4886         141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS  217 (394)
T ss_pred             hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence            5899999999998 67778999999999999999999 88888889999999999999999 999988777889999999


Q ss_pred             CCccc
Q 016905          157 SNNLT  161 (380)
Q Consensus       157 ~N~l~  161 (380)
                      +|.+.
T Consensus       218 ~N~~~  222 (394)
T COG4886         218 NNSII  222 (394)
T ss_pred             CCcce
Confidence            99633

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=97.80  E-value=2.5e-06  Score=77.95  Aligned_cols=106  Identities=22%  Similarity=0.295  Sum_probs=77.8

Q ss_pred             cccccccccCCCeeEEEEEe-CCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCC------Ccee
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS------SERI  344 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~------~~~~  344 (380)
                      |.....+|.|.- .|-.+.. -.++.||+|++... ......+.-.+|..++..+.|+|+++++.++...      .+.|
T Consensus        19 y~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~y   97 (369)
T KOG0665|consen   19 YVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEVY   97 (369)
T ss_pred             eeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhHH
Confidence            334455677765 4444443 35889999998632 2233456778999999999999999999998754      3579


Q ss_pred             EEeecccCCChhhhcccc-------cccceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVS-------HKIYTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~-------~~~~~~~~aL~yLH~~~i  380 (380)
                      +|||||.. +|.+.++..       ....+.+.|++|||++||
T Consensus        98 ~v~e~m~~-nl~~vi~~elDH~tis~i~yq~~~~ik~lhs~~I  139 (369)
T KOG0665|consen   98 LVMELMDA-NLCQVILMELDHETISYILYQMLCGIKHLHSAGI  139 (369)
T ss_pred             HHHHhhhh-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcce
Confidence            99999964 899888722       122458999999999986

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=97.74  E-value=2e-05  Score=79.23  Aligned_cols=87  Identities=23%  Similarity=0.215  Sum_probs=56.1

Q ss_pred             cCcccccccccCCCeeEEEEEeCC-CcEEEEEEecccCCC---------------------------------chHH---
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLSD-NTKVAVKRLQDYYSP---------------------------------GGEA---  313 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~~-g~~vavK~l~~~~~~---------------------------------~~~~---  313 (380)
                      ..|+. +.+|+|++|+||+|++.+ |+.||||++++....                                 +..+   
T Consensus       120 ~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~  198 (537)
T PRK04750        120 DDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLH  198 (537)
T ss_pred             HhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHH
Confidence            45665 789999999999999976 999999999643100                                 0011   


Q ss_pred             ---HHHHHHHHHhcCc----CCCCccceeeeeC-CCceeEEeecccCCChhhh
Q 016905          314 ---AFQREVHLISVAI----HKNLLQLIGYCTT-SSERILVYPFMQNLSVAYR  358 (380)
Q Consensus       314 ---~f~~e~~~l~~l~----H~Niv~l~g~~~~-~~~~~lV~Ey~~~GsL~~~  358 (380)
                         +|.+|..-+.+++    +.+.+.+=.++++ ....+|||||++++++.++
T Consensus       199 ~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~  251 (537)
T PRK04750        199 DELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDV  251 (537)
T ss_pred             HhhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhH
Confidence               2344444444442    3333333233322 4567899999999999874

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=97.71  E-value=3.6e-05  Score=70.92  Aligned_cols=104  Identities=17%  Similarity=0.213  Sum_probs=76.2

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeEEeec
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      +|..+++||+|+||..+.|+. -++++||||.=....   ..-++..|.+...-+ ..+.|..++-|-.++.+-.||+|.
T Consensus        29 hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS---~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidL  105 (449)
T KOG1165|consen   29 HYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKS---EAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDL  105 (449)
T ss_pred             cceeccccccCcceeeecccccccCceEEEEeccccC---CcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhhh
Confidence            678899999999999999985 679999999643211   223345555555544 577888887776777788899998


Q ss_pred             ccCCChhhhccccccc----------ceeeeeecceeeec
Q 016905          350 MQNLSVAYRLRVSHKI----------YTKIISLSSLHCFS  379 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~  379 (380)
                      + +-||+|+..-.+..          .+++.-++|+|++.
T Consensus       106 L-GPSLEDLFD~CgR~FSvKTV~miA~Qmi~rie~vH~k~  144 (449)
T KOG1165|consen  106 L-GPSLEDLFDLCGRRFSVKTVAMIAKQMITRIEYVHEKD  144 (449)
T ss_pred             h-CcCHHHHHHHhcCcccHHhHHHHHHHHHHHHHHHHhcc
Confidence            8 67999887644332          33777888988875

>cd05151 ChoK Choline Kinase (ChoK)

Probab=97.68  E-value=3.1e-05  Score=65.81  Aligned_cols=98  Identities=14%  Similarity=0.065  Sum_probs=68.5

Q ss_pred             cccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCc-cceeeeeCCCceeEEeecccCCCh
Q 016905          277 NIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLL-QLIGYCTTSSERILVYPFMQNLSV  355 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv-~l~g~~~~~~~~~lV~Ey~~~GsL  355 (380)
                      +.++.|.++.||++.. .+..+++|.......  ....+.+|++.+..+.+.+++ +++++.  .+..++||||+++.++
T Consensus         4 ~~l~~G~~~~vy~~~~-~~~~~~lK~~~~~~~--~~~~~~~E~~~l~~l~~~~~~P~~~~~~--~~~~~lv~e~i~G~~l   78 (170)
T cd05151           4 SPLKGGMTNKNYRVEV-ANKKYVVRIPGNGTE--LLINRENEAENSKLAAEAGIGPKLYYFD--PETGVLITEFIEGSEL   78 (170)
T ss_pred             eecCCcccCceEEEEE-CCeEEEEEeCCCCcc--cccCHHHHHHHHHHHHHhCCCCceEEEe--CCCCeEEEEecCCCcc
Confidence            5678999999999987 477899998753321  233567899999988766655 444433  3346899999999988


Q ss_pred             hhhcc-cccccceeeeeecceeeec
Q 016905          356 AYRLR-VSHKIYTKIISLSSLHCFS  379 (380)
Q Consensus       356 ~~~L~-~~~~~~~~~~aL~yLH~~~  379 (380)
                      .+.-. ......++..+++.||+.+
T Consensus        79 ~~~~~~~~~~~~~l~~~l~~LH~~~  103 (170)
T cd05151          79 LTEDFSDPENLEKIAKLLKKLHSSP  103 (170)
T ss_pred             ccccccCHHHHHHHHHHHHHHhCCC
Confidence            75411 1122345788889998765

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.61  E-value=3.1e-05  Score=76.16  Aligned_cols=100  Identities=28%  Similarity=0.335  Sum_probs=72.8

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      .+..|+|.+|.+.+.- ..+..+++|++|+||+|.|+...+  +..++.|+.|++++|.++ .++ .+..+..|+.++++
T Consensus        96 ~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l~l~  170 (414)
T KOG0531|consen   96 SLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLIS-DIS-GLESLKSLKLLDLS  170 (414)
T ss_pred             ceeeeeccccchhhcc-cchhhhhcchheeccccccccccc--hhhccchhhheeccCcch-hcc-CCccchhhhcccCC
Confidence            7888999999888443 337778899999999999885444  566777999999999988 554 35568889999999


Q ss_pred             CCcccccCc---cccccccccccCCCcc
Q 016905          157 SNNLTGRIP---MQLFSVATFNFTGTHL  181 (380)
Q Consensus       157 ~N~l~g~~p---~~~~~~~~~~~~gN~~  181 (380)
                      +|.++..-+   ..+.++......+|..
T Consensus       171 ~n~i~~ie~~~~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  171 YNRIVDIENDELSELISLEELDLGGNSI  198 (414)
T ss_pred             cchhhhhhhhhhhhccchHHHhccCCch
Confidence            999885555   3444444445555543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.60  E-value=3.2e-05  Score=82.20  Aligned_cols=88  Identities=28%  Similarity=0.405  Sum_probs=74.6

Q ss_pred             CEEEEEeCCCCC-ccccchh-HhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEE
Q 016905           77 NVISLTLGSNGF-SGKISPS-ITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLD  154 (380)
Q Consensus        77 ~l~~l~L~~n~l-~g~~p~~-~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~  154 (380)
                      ++++|-+..|.. -..++.. |..++.|++||||+|.=-+.+|.+++.|.+|++|||++..++ .+|..+.+|.+|.+||
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence            688888888872 3355554 777999999999998766799999999999999999999999 9999999999999999


Q ss_pred             CcCCcccccCc
Q 016905          155 LSSNNLTGRIP  165 (380)
Q Consensus       155 ls~N~l~g~~p  165 (380)
                      +..+.-...+|
T Consensus       625 l~~~~~l~~~~  635 (889)
T KOG4658|consen  625 LEVTGRLESIP  635 (889)
T ss_pred             ccccccccccc
Confidence            99887554554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.56  E-value=5.3e-05  Score=80.54  Aligned_cols=82  Identities=33%  Similarity=0.397  Sum_probs=75.7

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      .+..|||++|.=-+.+|.++++|-+|++|+|++..++ .+|..+++|..|.+||+..+.-...+|.-+..|.+|++|.+-
T Consensus       572 ~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~  650 (889)
T KOG4658|consen  572 LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP  650 (889)
T ss_pred             ceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence            6899999998888899999999999999999999999 999999999999999999998877888888889999999986


Q ss_pred             CCc
Q 016905          157 SNN  159 (380)
Q Consensus       157 ~N~  159 (380)
                      .-.
T Consensus       651 ~s~  653 (889)
T KOG4658|consen  651 RSA  653 (889)
T ss_pred             ccc
Confidence            654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.55  E-value=9.5e-06  Score=81.52  Aligned_cols=98  Identities=22%  Similarity=0.269  Sum_probs=74.8

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCcc-ccCCCCCCEEEC
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPAT-WSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~-~~~l~~L~~L~l  155 (380)
                      .|...+.+.|+|. .+..++.-++.|+.||||+|+|+..-  .+..|+.|++||||.|.|+ .+|.- ...+ +|+.|.+
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeee
Confidence            5777888899987 77788999999999999999998543  7899999999999999999 88852 2333 4999999


Q ss_pred             cCCcccccCc-cccccccccccCCC
Q 016905          156 SSNNLTGRIP-MQLFSVATFNFTGT  179 (380)
Q Consensus       156 s~N~l~g~~p-~~~~~~~~~~~~gN  179 (380)
                      +||.++.-.- ..+.++..++++-|
T Consensus       240 rnN~l~tL~gie~LksL~~LDlsyN  264 (1096)
T KOG1859|consen  240 RNNALTTLRGIENLKSLYGLDLSYN  264 (1096)
T ss_pred             cccHHHhhhhHHhhhhhhccchhHh
Confidence            9999873221 23334444444444

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.21  E-value=0.00016  Score=39.41  Aligned_cols=21  Identities=38%  Similarity=0.757  Sum_probs=12.4

Q ss_pred             ccCeeeccCccccccCCccccC
Q 016905          125 HLQSLNLANNKFSGSIPATWSQ  146 (380)
Q Consensus       125 ~L~~l~Ls~N~l~g~iP~~~~~  146 (380)
                      +|++|||++|+|+ .||.+|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3566666666666 66655543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.06  E-value=0.00018  Score=70.78  Aligned_cols=99  Identities=31%  Similarity=0.393  Sum_probs=73.5

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      .+..++|..|.+.. +-..+..+++|..|+|..|+|.. +...+..+++|++||||+|+++...+  +..++.|+.|+++
T Consensus        73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLS  148 (414)
T ss_pred             hHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc--hhhccchhhheec
Confidence            45566677787764 44457889999999999999984 44447889999999999999995543  6778889999999


Q ss_pred             CCcccccCccc--cccccccccCCCc
Q 016905          157 SNNLTGRIPMQ--LFSVATFNFTGTH  180 (380)
Q Consensus       157 ~N~l~g~~p~~--~~~~~~~~~~gN~  180 (380)
                      +|.++. +...  +..+....+.+|.
T Consensus       149 ~N~i~~-~~~~~~l~~L~~l~l~~n~  173 (414)
T KOG0531|consen  149 GNLISD-ISGLESLKSLKLLDLSYNR  173 (414)
T ss_pred             cCcchh-ccCCccchhhhcccCCcch
Confidence            999983 2211  3444444555543

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=96.98  E-value=9.8e-05  Score=75.61  Aligned_cols=106  Identities=15%  Similarity=0.176  Sum_probs=73.5

Q ss_pred             ccccccccCCCeeEEEEEe-CCCcEEEEEEec----ccCCC-chHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          274 SESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQ----DYYSP-GGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       274 ~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~----~~~~~-~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ...+++|.|++|.|+.... ......+.|...    ..... .....+..|..+-..++|+|++..+..+.+.....-+|
T Consensus       321 ~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~m  400 (601)
T KOG0590|consen  321 KPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQSM  400 (601)
T ss_pred             CccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchhhh
Confidence            3567899999997777665 233334444322    11111 11222667888888999999998888877766666669


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++ +|..++......         .+++.|++|+|++||
T Consensus       401 E~~~~-Dlf~~~~~~~~~~~~e~~c~fKqL~~Gv~y~h~~Gi  441 (601)
T KOG0590|consen  401 EYCPY-DLFSLVMSNGKLTPLEADCFFKQLLRGVKYLHSMGL  441 (601)
T ss_pred             hcccH-HHHHHHhcccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence            99999 999998764222         459999999999986

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=0.00026  Score=67.50  Aligned_cols=84  Identities=25%  Similarity=0.329  Sum_probs=59.5

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCC--hhhhCCcccCeeeccCcccccc-CCcc-----ccCCC
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLP--DFLGSMTHLQSLNLANNKFSGS-IPAT-----WSQLS  148 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p--~~~~~l~~L~~l~Ls~N~l~g~-iP~~-----~~~l~  148 (380)
                      .+..|+|+.|..-+.-..+..-+..|+.|||++|++- ..|  ...+.++.|..|+++.+.++.. +|+.     ...++
T Consensus       223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~  301 (505)
T KOG3207|consen  223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP  301 (505)
T ss_pred             cHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence            6777788777633344445566788888888888875 344  5577888888888888887632 3433     45678


Q ss_pred             CCCEEECcCCccc
Q 016905          149 NLKHLDLSSNNLT  161 (380)
Q Consensus       149 ~L~~L~ls~N~l~  161 (380)
                      +|++|+++.|++.
T Consensus       302 kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  302 KLEYLNISENNIR  314 (505)
T ss_pred             cceeeecccCccc
Confidence            8999999999875

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.89  E-value=0.00031  Score=38.21  Aligned_cols=22  Identities=27%  Similarity=0.564  Sum_probs=14.9

Q ss_pred             cCCeEEcCCCcCcccCChhhhCC
Q 016905          101 FLASLELQDNDLSGTLPDFLGSM  123 (380)
Q Consensus       101 ~L~~L~Ls~N~l~g~~p~~~~~l  123 (380)
                      +|++|||++|+|+ .+|+.|++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            4677777777777 777766543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.89  E-value=0.00023  Score=64.80  Aligned_cols=85  Identities=26%  Similarity=0.344  Sum_probs=59.6

Q ss_pred             CEEEEEeCCCCCcc--ccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccC-CccccCCCCCCEE
Q 016905           77 NVISLTLGSNGFSG--KISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSI-PATWSQLSNLKHL  153 (380)
Q Consensus        77 ~l~~l~L~~n~l~g--~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~i-P~~~~~l~~L~~L  153 (380)
                      +|..+||.+|.++.  +|-.-+.+++.|+.|+||.|.|+..|-..-..+.+|++|-|.+-.|.-.- -..+..++.++.|
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel  151 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL  151 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence            67788888888875  35556678888888888888887554433245667888877776665332 2345677888888


Q ss_pred             ECcCCccc
Q 016905          154 DLSSNNLT  161 (380)
Q Consensus       154 ~ls~N~l~  161 (380)
                      .+|.|++.
T Consensus       152 HmS~N~~r  159 (418)
T KOG2982|consen  152 HMSDNSLR  159 (418)
T ss_pred             hhccchhh
Confidence            88888543

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=96.84  E-value=0.00033  Score=68.27  Aligned_cols=91  Identities=14%  Similarity=0.159  Sum_probs=71.2

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCc------CCCCccceeeeeCCC
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI------HKNLLQLIGYCTTSS  341 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~------H~Niv~l~g~~~~~~  341 (380)
                      ....|...-..|+|-|++|.+|.. ..|..||||+|...  +-..+.=+.|+++|.++.      --+.++|+-.+...+
T Consensus       430 LD~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnN--E~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hkn  507 (752)
T KOG0670|consen  430 LDSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNN--EVMHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKN  507 (752)
T ss_pred             hcceeEEEeccccceeeeeeeccccCCCCeeEEEEeecc--hHHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhcc
Confidence            344577777789999999999998 55889999999643  223445578999999884      235788888888899


Q ss_pred             ceeEEeecccCCChhhhcccc
Q 016905          342 ERILVYPFMQNLSVAYRLRVS  362 (380)
Q Consensus       342 ~~~lV~Ey~~~GsL~~~L~~~  362 (380)
                      +++||+|-+.- +|.+.|...
T Consensus       508 HLClVFE~Lsl-NLRevLKKy  527 (752)
T KOG0670|consen  508 HLCLVFEPLSL-NLREVLKKY  527 (752)
T ss_pred             eeEEEehhhhc-hHHHHHHHh
Confidence            99999998754 899998753

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.83  E-value=0.00057  Score=61.14  Aligned_cols=81  Identities=35%  Similarity=0.428  Sum_probs=56.0

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCC--cCcccCChhhhCCcccCeeeccCccccccCCcc---ccCCCCCC
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDN--DLSGTLPDFLGSMTHLQSLNLANNKFSGSIPAT---WSQLSNLK  151 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N--~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~---~~~l~~L~  151 (380)
                      .+..|.+.+-+++..  ..+..|++|+.|.||.|  ..++.++...-.+++|++|+||.|++.-  +.+   +..+.+|.
T Consensus        44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLK  119 (260)
T ss_pred             chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchh
Confidence            444455555555422  23567888999999999  6667777767777999999999998872  333   34566777


Q ss_pred             EEECcCCccc
Q 016905          152 HLDLSSNNLT  161 (380)
Q Consensus       152 ~L~ls~N~l~  161 (380)
                      .||+.+|.-+
T Consensus       120 ~Ldl~n~~~~  129 (260)
T KOG2739|consen  120 SLDLFNCSVT  129 (260)
T ss_pred             hhhcccCCcc
Confidence            8888777654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=96.67  E-value=0.00014  Score=76.66  Aligned_cols=107  Identities=18%  Similarity=0.178  Sum_probs=82.7

Q ss_pred             CcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHH--hcCcCCCCccceeeeeCCCceeEEeec
Q 016905          272 NFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLI--SVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l--~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      ++...+.+|++.|=.|.+|+.+.|. |+||++-.....-..+.|.++++-+  .-.+|||.+++.-+-..++..|||-+|
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik~~l~~~pn~lPfqk~~~t~kAAylvRqy  102 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRLEEIKFALMKAPNCLPFQKVLVTDKAAYLVRQY  102 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHHHHHHHHhhcCCcccchHHHHHhhHHHHHHHHH
Confidence            4566788999999999999987776 9999986443344456666555443  445899999988777777788999999


Q ss_pred             ccCCChhhhccccc---------ccceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSH---------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~---------~~~~~~~aL~yLH~~~i  380 (380)
                      +.+ +|+|.|.-+.         ..++++.||.-||+.||
T Consensus       103 vkh-nLyDRlSTRPFL~~iEKkWiaFQLL~al~qcH~~gV  141 (1431)
T KOG1240|consen  103 VKH-NLYDRLSTRPFLVLIEKKWIAFQLLKALSQCHKLGV  141 (1431)
T ss_pred             Hhh-hhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            977 8999986432         23669999999999886

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.65  E-value=9.5e-05  Score=65.00  Aligned_cols=82  Identities=20%  Similarity=0.223  Sum_probs=74.7

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +++.|||+.|++- .+-..|.-++.|..||||.|.+. -.|..++.+..+..+++-+|+++ ..|.+++++++++.+++-
T Consensus        43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence            8999999999886 44556788899999999999997 89999999999999999999999 999999999999999999


Q ss_pred             CCccc
Q 016905          157 SNNLT  161 (380)
Q Consensus       157 ~N~l~  161 (380)
                      .|.|.
T Consensus       120 ~~~~~  124 (326)
T KOG0473|consen  120 KTEFF  124 (326)
T ss_pred             cCcch
Confidence            99876

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.52  E-value=0.0031  Score=54.50  Aligned_cols=59  Identities=34%  Similarity=0.449  Sum_probs=27.8

Q ss_pred             cCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECcCCccc
Q 016905          101 FLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLT  161 (380)
Q Consensus       101 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~  161 (380)
                      +...+||++|.+. .++ .|..++.|.+|.|++|+++..-|.--.-+++|+.|.|.+|++.
T Consensus        43 ~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             ccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence            3444555555543 222 2344555555555555555333332233344555555555543

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=96.42  E-value=0.0017  Score=65.31  Aligned_cols=83  Identities=17%  Similarity=0.132  Sum_probs=64.1

Q ss_pred             CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccCCChhhhccccc------ccc
Q 016905          293 SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSH------KIY  366 (380)
Q Consensus       293 ~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~GsL~~~L~~~~------~~~  366 (380)
                      .++.+|.|...+.... .......+.+..|+.+|||||++++......+..|||+|-+.  -|..++.+..      ..+
T Consensus        35 ~~~~~vsVF~~~~~~~-~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~--Pl~~~lk~l~~~~v~~Gl~  111 (690)
T KOG1243|consen   35 ADGGPVSVFVYKRSNG-EVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVR--PLETVLKELGKEEVCLGLF  111 (690)
T ss_pred             ccCCceEEEEEeCCCc-hhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeeccc--cHHHHHHHhHHHHHHHHHH
Confidence            5788899988853322 234556778899999999999999999999999999999875  4666665433      236


Q ss_pred             eeeeeecceeee
Q 016905          367 TKIISLSSLHCF  378 (380)
Q Consensus       367 ~~~~aL~yLH~~  378 (380)
                      +++.||.+||+.
T Consensus       112 qIl~AL~FL~~d  123 (690)
T KOG1243|consen  112 QILAALSFLNDD  123 (690)
T ss_pred             HHHHHHHHHhcc
Confidence            699999999854

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.34  E-value=0.0039  Score=53.90  Aligned_cols=82  Identities=22%  Similarity=0.299  Sum_probs=62.9

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCC--ccccCCCCCCEEE
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIP--ATWSQLSNLKHLD  154 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP--~~~~~l~~L~~L~  154 (380)
                      ....+||++|.+...  +.|..++.|..|.|++|+|+-.-|.--.-+++|++|.|.+|++. .+-  .-+..+++|++|-
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence            567899999998633  35778899999999999999666655555688999999999987 322  2356778888887


Q ss_pred             CcCCccc
Q 016905          155 LSSNNLT  161 (380)
Q Consensus       155 ls~N~l~  161 (380)
                      +-+|..+
T Consensus       120 ll~Npv~  126 (233)
T KOG1644|consen  120 LLGNPVE  126 (233)
T ss_pred             ecCCchh
Confidence            7777554

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=96.28  E-value=0.00033  Score=66.22  Aligned_cols=54  Identities=15%  Similarity=0.180  Sum_probs=41.3

Q ss_pred             cCCCCccceeeeeC---------------------------CCceeEEeecccCCChhhhccccccc--------ceeee
Q 016905          326 IHKNLLQLIGYCTT---------------------------SSERILVYPFMQNLSVAYRLRVSHKI--------YTKII  370 (380)
Q Consensus       326 ~H~Niv~l~g~~~~---------------------------~~~~~lV~Ey~~~GsL~~~L~~~~~~--------~~~~~  370 (380)
                      +|||||++.+++.+                           +...|+||.-.+. +|.++|..+...        -++++
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~-tLr~yl~~~~~s~r~~~~~laQlLE  352 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQ-TLREYLWTRHRSYRTGRVILAQLLE  352 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchh-hHHHHHhcCCCchHHHHHHHHHHHH
Confidence            69999999887642                           1346889988766 899998754332        34899


Q ss_pred             eecceeeecC
Q 016905          371 SLSSLHCFSL  380 (380)
Q Consensus       371 aL~yLH~~~i  380 (380)
                      |+.|||++||
T Consensus       353 av~hL~~hgv  362 (598)
T KOG4158|consen  353 AVTHLHKHGV  362 (598)
T ss_pred             HHHHHHHccc
Confidence            9999999986

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=96.25  E-value=0.0038  Score=61.31  Aligned_cols=97  Identities=18%  Similarity=0.113  Sum_probs=67.7

Q ss_pred             CCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeC----CCceeEEeecccC-CChh
Q 016905          283 GFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT----SSERILVYPFMQN-LSVA  356 (380)
Q Consensus       283 ~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~----~~~~~lV~Ey~~~-GsL~  356 (380)
                      .-.+.||+.. .||..++.|+++...... ...-..-++.++++.|+|+|++..++..    +....+||+|.|+ ++|.
T Consensus       288 ~~~Ttyk~~s~~DG~~YvLkRlhg~r~~~-~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~  366 (655)
T KOG3741|consen  288 FSITTYKATSNVDGNAYVLKRLHGDRDQS-TNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLY  366 (655)
T ss_pred             ccceeEeeeeccCCceeeeeeeccccccC-cccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCchHH
Confidence            3457899987 689999999995332221 1122345788899999999999988763    3457899999984 5676


Q ss_pred             hhccccccc------------------------ceeeeeecceeeecC
Q 016905          357 YRLRVSHKI------------------------YTKIISLSSLHCFSL  380 (380)
Q Consensus       357 ~~L~~~~~~------------------------~~~~~aL~yLH~~~i  380 (380)
                      ++--.....                        .|+..||.++|+-|+
T Consensus       367 d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHssGL  414 (655)
T KOG3741|consen  367 DLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSSGL  414 (655)
T ss_pred             HHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhcCc
Confidence            664321111                        237778999998764

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.23  E-value=0.0023  Score=57.33  Aligned_cols=69  Identities=26%  Similarity=0.370  Sum_probs=53.8

Q ss_pred             ccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCc--cccccCCccccCCCCCCEEECcCCccc
Q 016905           91 KISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANN--KFSGSIPATWSQLSNLKHLDLSSNNLT  161 (380)
Q Consensus        91 ~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N--~l~g~iP~~~~~l~~L~~L~ls~N~l~  161 (380)
                      .+.+-.-.+..|+.|+..+-.++- + ..+..|++|+.|++|.|  +.++.++.....+++|++|++|+|++.
T Consensus        34 ~~~gl~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   34 KLGGLTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             Ccccccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            355555566677777777776652 1 23557899999999999  788888887788899999999999987

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.11  E-value=0.0021  Score=61.59  Aligned_cols=84  Identities=25%  Similarity=0.351  Sum_probs=60.1

Q ss_pred             CEEEEEeCCCCCcccc-chhHhCCccCCeEEcCCCcCcc-cCChh-----hhCCcccCeeeccCccccccCCc--cccCC
Q 016905           77 NVISLTLGSNGFSGKI-SPSITKLKFLASLELQDNDLSG-TLPDF-----LGSMTHLQSLNLANNKFSGSIPA--TWSQL  147 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~-p~~~~~l~~L~~L~Ls~N~l~g-~~p~~-----~~~l~~L~~l~Ls~N~l~g~iP~--~~~~l  147 (380)
                      .|++|||++|++-..- -+..+.++.|+.|+++.+.++. .+|+.     ....++|+.|+++.|++. ..|.  .+..+
T Consensus       247 ~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l  325 (505)
T KOG3207|consen  247 TLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTL  325 (505)
T ss_pred             HHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhcc
Confidence            7999999999986432 2567889999999999999874 35544     456899999999999986 4432  33444


Q ss_pred             CCCCEEECcCCccc
Q 016905          148 SNLKHLDLSSNNLT  161 (380)
Q Consensus       148 ~~L~~L~ls~N~l~  161 (380)
                      .+|+.|..-.|.|+
T Consensus       326 ~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  326 ENLKHLRITLNYLN  339 (505)
T ss_pred             chhhhhhccccccc
Confidence            55555554444443

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=95.98  E-value=0.0094  Score=52.17  Aligned_cols=83  Identities=20%  Similarity=0.293  Sum_probs=60.2

Q ss_pred             cCcccccccccCCC-eeEEEEEeCCCcEEEEEEecc---c--------CCC---------chHHHHHHHHHHHhcCc---
Q 016905          271 DNFSESNIIGQGGF-GKVYKGVLSDNTKVAVKRLQD---Y--------YSP---------GGEAAFQREVHLISVAI---  326 (380)
Q Consensus       271 ~~~~~~~~lg~G~~-g~Vy~~~~~~g~~vavK~l~~---~--------~~~---------~~~~~f~~e~~~l~~l~---  326 (380)
                      .+++..+.||.|.. |.|||... +|+.+|+|....   .        ...         .-...|..|++..++++   
T Consensus        37 ~~I~flefLg~g~~~~~V~kv~I-~g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRLke~~  115 (207)
T PF13095_consen   37 DDIEFLEFLGHGSHDGYVFKVEI-DGRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGRLKEAG  115 (207)
T ss_pred             CcEeeeeecCCCCceeEEEEEEE-CCeEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHHHHhcc
Confidence            67888999999999 99999998 788999999321   0        000         11346889999988885   


Q ss_pred             CCCC--ccceeeeeCC------------------CceeEEeecccCCC
Q 016905          327 HKNL--LQLIGYCTTS------------------SERILVYPFMQNLS  354 (380)
Q Consensus       327 H~Ni--v~l~g~~~~~------------------~~~~lV~Ey~~~Gs  354 (380)
                      +..+  |+.+||..-.                  .-..||.||++...
T Consensus       116 ~e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~  163 (207)
T PF13095_consen  116 REGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP  163 (207)
T ss_pred             ccCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcc
Confidence            4456  8999987321                  12468999988655

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=95.84  E-value=0.00067  Score=67.57  Aligned_cols=103  Identities=19%  Similarity=0.239  Sum_probs=77.5

Q ss_pred             ccccCCCeeEEEEEe----CCCcEEEEEEecccCCC-chHHHHHHHHHHHhcCc-CCCCccceeeeeCCCceeEEeeccc
Q 016905          278 IIGQGGFGKVYKGVL----SDNTKVAVKRLQDYYSP-GGEAAFQREVHLISVAI-HKNLLQLIGYCTTSSERILVYPFMQ  351 (380)
Q Consensus       278 ~lg~G~~g~Vy~~~~----~~g~~vavK~l~~~~~~-~~~~~f~~e~~~l~~l~-H~Niv~l~g~~~~~~~~~lV~Ey~~  351 (380)
                      ++|+|.||.|+...-    +.|..+|+|.+.+.... ........|..++..++ ||.+|++.-.+..+...+++.+|..
T Consensus         1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~r   80 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLR   80 (612)
T ss_pred             CCCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhcc
Confidence            478999999885532    45778888888643222 12224566788888887 9999999988888899999999999


Q ss_pred             CCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          352 NLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       352 ~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +|+|...+......         .+.+.+++.+|+.+|
T Consensus        81 gg~lft~l~~~~~f~~~~~~~~~aelaLald~lh~l~i  118 (612)
T KOG0603|consen   81 GGDLFTRLSKEVMFDELDVAFYLAELALALDHLHKLGI  118 (612)
T ss_pred             cchhhhccccCCchHHHHHHHHHHHHHHHHhhcchhHH
Confidence            99999888754333         237888999998764

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.80  E-value=0.0048  Score=31.17  Aligned_cols=13  Identities=38%  Similarity=0.853  Sum_probs=4.9

Q ss_pred             ccCeeeccCcccc
Q 016905          125 HLQSLNLANNKFS  137 (380)
Q Consensus       125 ~L~~l~Ls~N~l~  137 (380)
                      +|+.|+|++|+|+
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3445555555544

...

>PLN02876 acyl-CoA dehydrogenase

Probab=95.75  E-value=0.012  Score=63.12  Aligned_cols=103  Identities=11%  Similarity=0.150  Sum_probs=69.2

Q ss_pred             ccccccCCCeeEEEEEeCCC---cEEEEEEecccCCCchHHHHHHHHHHHhcCc-CCCC--ccceeeeeCC---CceeEE
Q 016905          276 SNIIGQGGFGKVYKGVLSDN---TKVAVKRLQDYYSPGGEAAFQREVHLISVAI-HKNL--LQLIGYCTTS---SERILV  346 (380)
Q Consensus       276 ~~~lg~G~~g~Vy~~~~~~g---~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~-H~Ni--v~l~g~~~~~---~~~~lV  346 (380)
                      .+.++.|.+..+|+....++   ..+++|+............+.+|.++|..+. |.++  .+++++|.+.   +..++|
T Consensus        43 v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~G~~flV  122 (822)
T PLN02876         43 VSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQSAHAVEREYQVLRALGEHTDVPVPKVYCLCTDASVIGTAFYI  122 (822)
T ss_pred             EEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccCccHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcCCCceEE
Confidence            45678999999999887543   3677777643222223467889999999995 6765  6778888664   457899


Q ss_pred             eecccCCChhhhc-c------cccccceeeeeecceeee
Q 016905          347 YPFMQNLSVAYRL-R------VSHKIYTKIISLSSLHCF  378 (380)
Q Consensus       347 ~Ey~~~GsL~~~L-~------~~~~~~~~~~aL~yLH~~  378 (380)
                      |||+++..+.+.. .      ......++...|+.||+.
T Consensus       123 ME~v~G~~~~~~~~~~~~~~~r~~l~~~l~~~La~LH~v  161 (822)
T PLN02876        123 MEYLEGRIFVDPKLPGVAPERRRAIYRATAKVLAALHSA  161 (822)
T ss_pred             EEecCCcccCCccCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            9999976544321 0      011123477788888874

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=95.58  E-value=0.014  Score=51.03  Aligned_cols=100  Identities=16%  Similarity=0.209  Sum_probs=62.7

Q ss_pred             cccccCCCeeEEEEEeCC-------CcEEEEEEecccC------------C---------CchHHHHH----HHHHHHhc
Q 016905          277 NIIGQGGFGKVYKGVLSD-------NTKVAVKRLQDYY------------S---------PGGEAAFQ----REVHLISV  324 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~~~-------g~~vavK~l~~~~------------~---------~~~~~~f~----~e~~~l~~  324 (380)
                      ..||.|.-+.||.|.-.+       +..+|||..+...            .         ....+.+.    +|.+.|.+
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            468999999999998643       4799999774211            0         01123333    89999998


Q ss_pred             CcC--CCCccceeeeeCCCceeEEeecccCCChhh-hcccc--------cccceeeeeecce-eeecC
Q 016905          325 AIH--KNLLQLIGYCTTSSERILVYPFMQNLSVAY-RLRVS--------HKIYTKIISLSSL-HCFSL  380 (380)
Q Consensus       325 l~H--~Niv~l~g~~~~~~~~~lV~Ey~~~GsL~~-~L~~~--------~~~~~~~~aL~yL-H~~~i  380 (380)
                      ++.  -++.+++++    ..-+|||||+.++.+.. .|++.        ....+++.++.++ |+.||
T Consensus        83 l~~~Gv~vP~pi~~----~~~~lvME~Ig~~~~~~~~Lkd~~~~~~~~~~i~~~i~~~l~~l~H~~gl  146 (197)
T cd05146          83 MQKAGIPCPEVVVL----KKHVLVMSFIGDDQVPAPKLKDAKLNDEEMKNAYYQVLSMMKQLYKECNL  146 (197)
T ss_pred             HHHcCCCCCeEEEe----cCCEEEEEEcCCCCccchhhhccccCHHHHHHHHHHHHHHHHHHHHhCCe
Confidence            864  456666654    45789999997653321 12211        1123467777777 66554

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.46  E-value=0.024  Score=54.99  Aligned_cols=81  Identities=19%  Similarity=0.340  Sum_probs=49.2

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCC-CcCcccCChhhhCCcccCeeeccCc-cccccCCccccCCCCCCEEE
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQD-NDLSGTLPDFLGSMTHLQSLNLANN-KFSGSIPATWSQLSNLKHLD  154 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~l~Ls~N-~l~g~iP~~~~~l~~L~~L~  154 (380)
                      .+..|+++++.|+ .+| .  -..+|+.|++++ ++++ .+|..+  .++|++|++++| ++. .+|.      +|+.|+
T Consensus        53 ~l~~L~Is~c~L~-sLP-~--LP~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~  118 (426)
T PRK15386         53 ASGRLYIKDCDIE-SLP-V--LPNELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSLE  118 (426)
T ss_pred             CCCEEEeCCCCCc-ccC-C--CCCCCcEEEccCCCCcc-cCCchh--hhhhhheEccCccccc-cccc------ccceEE
Confidence            5777888888776 445 1  223688888876 5553 666655  257888888887 444 5664      355566


Q ss_pred             CcCCcc--cccCccccccc
Q 016905          155 LSSNNL--TGRIPMQLFSV  171 (380)
Q Consensus       155 ls~N~l--~g~~p~~~~~~  171 (380)
                      ++.|.+  -+.+|.++..+
T Consensus       119 L~~n~~~~L~~LPssLk~L  137 (426)
T PRK15386        119 IKGSATDSIKNVPNGLTSL  137 (426)
T ss_pred             eCCCCCcccccCcchHhhe
Confidence            665543  23555555433

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.46  E-value=0.0085  Score=55.91  Aligned_cols=61  Identities=21%  Similarity=0.221  Sum_probs=41.2

Q ss_pred             CEEEEEeCCCCCccccchhH----hCCccCCeEEcCCCcCcc----cCC---------hhhhCCcccCeeeccCcccc
Q 016905           77 NVISLTLGSNGFSGKISPSI----TKLKFLASLELQDNDLSG----TLP---------DFLGSMTHLQSLNLANNKFS  137 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~----~~l~~L~~L~Ls~N~l~g----~~p---------~~~~~l~~L~~l~Ls~N~l~  137 (380)
                      +++.||||.|.|.-.-++.|    ..++.|+.|.|.+|.+.-    .+-         .-+++-+.|++++.++|++.
T Consensus        93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen   93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE  170 (382)
T ss_pred             ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence            78999999999876665554    456888888888888751    111         12234466777777777653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.45  E-value=0.0065  Score=54.94  Aligned_cols=84  Identities=24%  Similarity=0.395  Sum_probs=64.0

Q ss_pred             CEEEEEeCCCCCccccchh----HhCCccCCeEEcCCCcCcccC----C-------hhhhCCcccCeeeccCccccccCC
Q 016905           77 NVISLTLGSNGFSGKISPS----ITKLKFLASLELQDNDLSGTL----P-------DFLGSMTHLQSLNLANNKFSGSIP  141 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~----~~~l~~L~~L~Ls~N~l~g~~----p-------~~~~~l~~L~~l~Ls~N~l~g~iP  141 (380)
                      .++.++||+|.++.+-..+    +.+-.+|+..++|.- |+|..    |       ..+-.||+|+..|||.|-|.-..|
T Consensus        31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            5788999999998665544    445678888888864 34443    3       234578999999999999998888


Q ss_pred             cc----ccCCCCCCEEECcCCccc
Q 016905          142 AT----WSQLSNLKHLDLSSNNLT  161 (380)
Q Consensus       142 ~~----~~~l~~L~~L~ls~N~l~  161 (380)
                      ..    ++.-+.|.+|.|+||.+-
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCC
Confidence            65    456688999999999763

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=95.22  E-value=0.051  Score=46.46  Aligned_cols=78  Identities=13%  Similarity=0.209  Sum_probs=57.3

Q ss_pred             cccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCcc-ceeeeeCCCceeEEeecccCC
Q 016905          275 ESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQ-LIGYCTTSSERILVYPFMQNL  353 (380)
Q Consensus       275 ~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~-l~g~~~~~~~~~lV~Ey~~~G  353 (380)
                      ....|++|.+|.||.|.+ .|..+|+|+-+.   ...+..+..|.+++..+.-.++-+ ++.|    ++-++.|||..+-
T Consensus        26 v~~~L~KG~~s~Vyl~~~-~~~~~a~Kvrr~---ds~r~~l~kEakiLeil~g~~~~p~vy~y----g~~~i~me~i~G~   97 (201)
T COG2112          26 VEKELAKGTTSVVYLGEW-RGGEVALKVRRR---DSPRRNLEKEAKILEILAGEGVTPEVYFY----GEDFIRMEYIDGR   97 (201)
T ss_pred             hhhhhhcccccEEEEeec-cCceEEEEEecC---CcchhhHHHHHHHHHHhhhcCCCceEEEe----chhhhhhhhhcCc
Confidence            356799999999999998 566899997643   334678999999998887666543 3333    2334459999987


Q ss_pred             Chhhhcc
Q 016905          354 SVAYRLR  360 (380)
Q Consensus       354 sL~~~L~  360 (380)
                      .|.++-.
T Consensus        98 ~L~~~~~  104 (201)
T COG2112          98 PLGKLEI  104 (201)
T ss_pred             chhhhhh
Confidence            8877654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.10  E-value=0.028  Score=50.91  Aligned_cols=61  Identities=20%  Similarity=0.345  Sum_probs=44.0

Q ss_pred             CEEEEEeCCCCCccccchhHh----CCccCCeEEcCCCcCc----ccCChhh---------hCCcccCeeeccCcccc
Q 016905           77 NVISLTLGSNGFSGKISPSIT----KLKFLASLELQDNDLS----GTLPDFL---------GSMTHLQSLNLANNKFS  137 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~----~l~~L~~L~Ls~N~l~----g~~p~~~---------~~l~~L~~l~Ls~N~l~  137 (380)
                      ++..++||.|.|+-..|+.++    .-+.|..|.|++|.+.    |.|-..+         .+-|.|++.+...|+|.
T Consensus        93 ~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle  170 (388)
T COG5238          93 RLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE  170 (388)
T ss_pred             cceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence            788899999999888887654    4578999999999874    1222222         23477888888888774

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.93  E-value=0.037  Score=53.72  Aligned_cols=49  Identities=22%  Similarity=0.392  Sum_probs=26.6

Q ss_pred             CEEEEEeCC-CCCccccchhHhCCccCCeEEcCCC-cCcccCChhhhCCcccCeeeccCcc
Q 016905           77 NVISLTLGS-NGFSGKISPSITKLKFLASLELQDN-DLSGTLPDFLGSMTHLQSLNLANNK  135 (380)
Q Consensus        77 ~l~~l~L~~-n~l~g~~p~~~~~l~~L~~L~Ls~N-~l~g~~p~~~~~l~~L~~l~Ls~N~  135 (380)
                      +|+.|++++ +.+ ..+|..+.  ++|+.|++++| ++. .+|..      |+.|+|+.|.
T Consensus        73 sLtsL~Lsnc~nL-tsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~s------Le~L~L~~n~  123 (426)
T PRK15386         73 ELTEITIENCNNL-TTLPGSIP--EGLEKLTVCHCPEIS-GLPES------VRSLEIKGSA  123 (426)
T ss_pred             CCcEEEccCCCCc-ccCCchhh--hhhhheEccCccccc-ccccc------cceEEeCCCC
Confidence            577777765 344 34554442  46677777766 443 44532      4444454444

>PRK10593 hypothetical protein; Provisional

Probab=94.84  E-value=0.043  Score=51.39  Aligned_cols=99  Identities=13%  Similarity=0.097  Sum_probs=66.1

Q ss_pred             cccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcC---CCCccceeeeeC---CCceeEEee
Q 016905          275 ESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIH---KNLLQLIGYCTT---SSERILVYP  348 (380)
Q Consensus       275 ~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H---~Niv~l~g~~~~---~~~~~lV~E  348 (380)
                      ..+.||.|..+.||+....+++ +.+|..+.   ......|..|.+.+..+.-   -.+.+++++|..   .+..++|||
T Consensus        18 ~~~~i~~G~~~~vy~~~~~~~~-~~~k~~~~---~~~~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~~~~g~~~LVmE   93 (297)
T PRK10593         18 RVECISEQPYAALWALYDSQGN-PMPLMARS---FSTPGVAQQEAWKLSMLARSGTVRMPTVYGVMTHEQSPGPDVLLLE   93 (297)
T ss_pred             eeeecCCccceeEEEEEcCCCC-EEEEEecc---cccchHHHHHHHHHHHHccCCCCCcCcEEEEeccCCcCCCeEEEEe
Confidence            3567999999999998865564 55666422   1124578999999988853   357788888754   356899999


Q ss_pred             cccCCChhhhcccc----cccceeeeeecceee
Q 016905          349 FMQNLSVAYRLRVS----HKIYTKIISLSSLHC  377 (380)
Q Consensus       349 y~~~GsL~~~L~~~----~~~~~~~~aL~yLH~  377 (380)
                      |++++++.+.....    .....+..+|+-||+
T Consensus        94 ~i~G~~~~~~~~~~~~~~~l~~~l~~~La~LH~  126 (297)
T PRK10593         94 RLRGVSVEAPARTPERWEQLKDQIVEGLLAWHR  126 (297)
T ss_pred             ccCCEecCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            99998886521110    001123466677775

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=94.74  E-value=0.048  Score=46.92  Aligned_cols=102  Identities=16%  Similarity=0.174  Sum_probs=68.3

Q ss_pred             ccccCCCeeEEEEEeCCCcEEEEEE-ecccCCCc------hHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          278 IIGQGGFGKVYKGVLSDNTKVAVKR-LQDYYSPG------GEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       278 ~lg~G~~g~Vy~~~~~~g~~vavK~-l~~~~~~~------~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      .+++|+-+.+|.+.+ -|..+.+|. +.+.....      ....-.+|.+++.+++---|....=|..+++...|+|||+
T Consensus         3 ~i~~GAEa~i~~~~~-~g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me~I   81 (204)
T COG3642           3 LIKQGAEAIIYLTDF-LGLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVMEYI   81 (204)
T ss_pred             hhhCCcceeEEeeec-cCcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEEEe
Confidence            578999999999977 344455553 22211111      1344578999999887666666666777888899999999


Q ss_pred             cCCChhhhcccc--cccceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVS--HKIYTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~--~~~~~~~~aL~yLH~~~i  380 (380)
                      ++-.|.+.|...  ...+++-.-+.-||+.||
T Consensus        82 ~G~~lkd~l~~~~~~~~r~vG~~vg~lH~~gi  113 (204)
T COG3642          82 EGELLKDALEEARPDLLREVGRLVGKLHKAGI  113 (204)
T ss_pred             CChhHHHHHHhcchHHHHHHHHHHHHHHhcCe
Confidence            999898888765  223344445555665543

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=94.62  E-value=0.055  Score=54.42  Aligned_cols=87  Identities=16%  Similarity=0.205  Sum_probs=55.4

Q ss_pred             CcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCc-----------------------------hHH---------
Q 016905          272 NFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPG-----------------------------GEA---------  313 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~-----------------------------~~~---------  313 (380)
                      .|+ .+-|+.++-|+||+|++.+|+.||||+.++...+.                             ..+         
T Consensus       127 eF~-~~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~E  205 (517)
T COG0661         127 EFE-PEPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREE  205 (517)
T ss_pred             HcC-CCchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHH
Confidence            444 36789999999999999999999999886432110                             001         


Q ss_pred             -HHHHHHHHHhcC----c-CCCCccceeeeeCCCceeEEeecccCCChhhhc
Q 016905          314 -AFQREVHLISVA----I-HKNLLQLIGYCTTSSERILVYPFMQNLSVAYRL  359 (380)
Q Consensus       314 -~f~~e~~~l~~l----~-H~Niv~l~g~~~~~~~~~lV~Ey~~~GsL~~~L  359 (380)
                       +|.+|..-+.++    + .+++.-..=|....+...|+|||++|-.+.+..
T Consensus       206 lDy~~EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~  257 (517)
T COG0661         206 LDYRREAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIA  257 (517)
T ss_pred             hCHHHHHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHH
Confidence             123344333333    2 333332222333356789999999999998884

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	380
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		4e-39
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		6e-37
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		8e-13
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		8e-13
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-12
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-12
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		2e-12
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		2e-12
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		3e-12
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		2e-10
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-08
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		5e-07
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		5e-07
1luf_A	343	Crystal Structure Of The Musk Tyrosine Kinase: Insi		2e-05
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		7e-05
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		7e-05
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		7e-05
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-04
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-04
2yjs_A	342	Structure Of C1156y Mutant Anaplastic Lymphoma Kina		2e-04
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-04
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		2e-04
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		2e-04
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		2e-04
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		2e-04
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		2e-04
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		2e-04
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		2e-04
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		2e-04
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		3e-04
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		3e-04
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		3e-04
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		4e-04
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		4e-04
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		4e-04
3lzb_A	327	Egfr Kinase Domain Complexed With An Imidazo[2,1-B]		4e-04
3w2o_A	331	Egfr Kinase Domain T790m/l858r Mutant With Tak-285		4e-04
2jiu_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		4e-04
4g5p_A	330	Crystal Structure Of Egfr Kinase T790m In Complex W		4e-04
2jit_A	327	Crystal Structure Of Egfr Kinase Domain T790m Mutat		4e-04
3ika_A	331	Crystal Structure Of Egfr 696-1022 T790m Mutant Cov		4e-04
4hjo_A	337	Crystal Structure Of The Inactive Egfr Tyrosine Kin		4e-04
3bel_A	315	X-Ray Structure Of Egfr In Complex With Oxime Inhib		4e-04
4i24_A	329	Structure Of T790m Egfr Kinase Domain Co-crystalliz		4e-04
2jiv_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		4e-04
2rfd_A	324	Crystal Structure Of The Complex Between The Egfr K		5e-04
4g5j_A	330	Crystal Structure Of Egfr Kinase In Complex With Bi		5e-04
4i23_A	329	Crystal Structure Of The Wild-type Egfr Kinase Doma		5e-04
4i21_A	329	Crystal Structure Of L858r + T790m Egfr Kinase Doma		5e-04
1m14_A	333	Tyrosine Kinase Domain From Epidermal Growth Factor		5e-04
2gs2_A	330	Crystal Structure Of The Active Egfr Kinase Domain		5e-04
4i1z_A	329	Crystal Structure Of The Monomeric (v948r) Form Of		5e-04
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		5e-04
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		5e-04
2gs7_A	330	Crystal Structure Of The Inactive Egfr Kinase Domai		5e-04
2itt_A	327	Crystal Structure Of Egfr Kinase Domain L858r Mutat		5e-04
2j5f_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		5e-04
2j5e_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		5e-04
3vjo_A	334	Crystal Structure Of The Wild-Type Egfr Kinase Doma		5e-04
2eb3_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (L8		5e-04
4i20_A	329	Crystal Structure Of Monomeric (v948r) Primary Onco		5e-04
1xkk_A	352	Egfr Kinase Domain Complexed With A Quinazoline Inh		5e-04
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		7e-04
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		7e-04
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		7e-04
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		8e-04
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		8e-04
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		8e-04
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		8e-04
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		8e-04
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		9e-04
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		9e-04

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score =  158 bits (400), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 77/126 (61%), Positives = 96/126 (76%)
Query: 235 RKLKHDVFFDVAGEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSD 294
           RK   D FFDV  E+D +V L QL+RFS RELQ+A+DNFS  NI+G+GGFGKVYKG L+D
Sbjct: 2   RKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLAD 61
Query: 295 NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLS 354
            T VAVKRL++    GGE  FQ EV +IS+A+H+NLL+L G+C T +ER+LVYP+M N S
Sbjct: 62  GTLVAVKRLKEERXQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGS 121
Query: 355 VAYRLR 360
           VA  LR
Sbjct: 122 VASCLR 127

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score =  151 bits (381), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 72/119 (60%), Positives = 92/119 (77%)
Query: 242 FFDVAGEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVK 301
           FFDV  E+D +V L QL+RFS RELQ+A+DNF   NI+G+GGFGKVYKG L+D   VAVK
Sbjct: 1   FFDVPAEEDPEVHLGQLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVK 60
Query: 302 RLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
           RL++  + GGE  FQ EV +IS+A+H+NLL+L G+C T +ER+LVYP+M N SVA  LR
Sbjct: 61  RLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLR 119

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/93 (44%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 260 RFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREV 319
           R    +L+ AT+NF    +IG G FGKVYKGVL D  KVA+KR     S G E       
Sbjct: 28  RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIE 87
Query: 320 HLISVAIHKNLLQLIGYCTTSSERILVYPFMQN 352
            L S   H +L+ LIG+C   +E IL+Y +M+N
Sbjct: 88  TL-SFCRHPHLVSLIGFCDERNEMILIYKYMEN 119

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/93 (44%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 260 RFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREV 319
           R    +L+ AT+NF    +IG G FGKVYKGVL D  KVA+KR     S G E       
Sbjct: 28  RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIE 87
Query: 320 HLISVAIHKNLLQLIGYCTTSSERILVYPFMQN 352
            L S   H +L+ LIG+C   +E IL+Y +M+N
Sbjct: 88  TL-SFCRHPHLVSLIGFCDERNEMILIYKYMEN 119

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 2/118 (1%)
Query: 74  RNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLAN 133
            NG+++ L +  N  SG I   I  + +L  L L  ND+SG++PD +G +  L  L+L++
Sbjct: 627 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 686
Query: 134 NKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPM--QLFSVATFNFTGTHLICGSSLEQ 189
           NK  G IP   S L+ L  +DLS+NNL+G IP   Q  +     F     +CG  L +
Sbjct: 687 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 2/118 (1%)
Query: 74  RNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLAN 133
            NG+++ L +  N  SG I   I  + +L  L L  ND+SG++PD +G +  L  L+L++
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689
Query: 134 NKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPM--QLFSVATFNFTGTHLICGSSLEQ 189
           NK  G IP   S L+ L  +DLS+NNL+G IP   Q  +     F     +CG  L +
Sbjct: 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 69/117 (58%), Gaps = 10/117 (8%)
Query: 252 KVSLTQLRRFSCRELQLATDNFSE------SNIIGQGGFGKVYKGVLSDNTKVAVKRLQ- 304
           +VS T+   FS  EL+  T+NF E       N +G+GGFG VYKG + +NT VAVK+L  
Sbjct: 6   EVSDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAA 64
Query: 305 --DYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRL 359
             D  +   +  F +E+ +++   H+NL++L+G+ +   +  LVY +M N S+  RL
Sbjct: 65  MVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRL 121

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 69/117 (58%), Gaps = 10/117 (8%)
Query: 252 KVSLTQLRRFSCRELQLATDNFSE------SNIIGQGGFGKVYKGVLSDNTKVAVKRLQ- 304
           +VS T+   FS  EL+  T+NF E       N +G+GGFG VYKG + +NT VAVK+L  
Sbjct: 6   EVSDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAA 64
Query: 305 --DYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRL 359
             D  +   +  F +E+ +++   H+NL++L+G+ +   +  LVY +M N S+  RL
Sbjct: 65  MVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRL 121

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 68/116 (58%), Gaps = 10/116 (8%)
Query: 253 VSLTQLRRFSCRELQLATDNFSE------SNIIGQGGFGKVYKGVLSDNTKVAVKRLQ-- 304
           VS T+   FS  EL+  T+NF E       N +G+GGFG VYKG + +NT VAVK+L   
Sbjct: 1   VSDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAM 59
Query: 305 -DYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRL 359
            D  +   +  F +E+ +++   H+NL++L+G+ +   +  LVY +M N S+  RL
Sbjct: 60  VDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRL 115

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 63/113 (55%), Gaps = 10/113 (8%)
Query: 256 TQLRRFSCRELQLATDNFSE------SNIIGQGGFGKVYKGVLSDNTKVAVKRLQ---DY 306
           T+   FS  EL+  T+NF E       N  G+GGFG VYKG + +NT VAVK+L    D 
Sbjct: 1   TRFHSFSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYV-NNTTVAVKKLAAMVDI 59
Query: 307 YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRL 359
            +   +  F +E+ + +   H+NL++L+G+ +   +  LVY +  N S+  RL
Sbjct: 60  TTEELKQQFDQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSLLDRL 112

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 30/136 (22%)
Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLA------- 132
           S+T+  N  +GKI P+   L  LA ++L  N L G      GS  + Q ++LA       
Sbjct: 178 SMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236
Query: 133 ----------------NNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIP----MQLFSVA 172
                           NN+  G++P   +QL  L  L++S NNL G IP    +Q F V+
Sbjct: 237 LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296
Query: 173 TFNFTGTHLICGSSLE 188
              +     +CGS L 
Sbjct: 297 A--YANNKCLCGSPLP 310

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 279 IGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYC 337
           IG+G FG+V+ G L +DNT VAVK  ++   P  +A F +E  ++    H N+++LIG C
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 181
Query: 338 TTSSERILVYPFMQN 352
           T      +V   +Q 
Sbjct: 182 TQKQPIYIVMELVQG 196

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 279 IGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYC 337
           IG+G FG+V+ G L +DNT VAVK  ++   P  +A F +E  ++    H N+++LIG C
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 181
Query: 338 TTSSERILVYPFMQN 352
           T      +V   +Q 
Sbjct: 182 TQKQPIYIVMELVQG 196

>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights Into Receptor Autoregulation Length = 343

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 267 QLATDNFSESNIIGQGGFGKVYK----GVLSDN--TKVAVKRLQDYYSPGGEAAFQREVH 320
           +   +N      IG+G FG+V++    G+L     T VAVK L++  S   +A FQRE  
Sbjct: 43  EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAA 102
Query: 321 LISVAIHKNLLQLIGYCTTSSERILVYPFM 350
           L++   + N+++L+G C       L++ +M
Sbjct: 103 LMAEFDNPNIVKLLGVCAVGKPMCLLFEYM 132

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 279 IGQGGFGKVY----KGVLSDNTK--VAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQ 332
           +G+G FGKV+      +L +  K  VAVK L++  S      FQRE  L+++  H+++++
Sbjct: 26  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA-SESARQDFQREAELLTMLQHQHIVR 84
Query: 333 LIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKIIS 371
             G CT     ++V+ +M++  +   LR SH    K+++
Sbjct: 85  FFGVCTEGRPLLMVFEYMRHGDLNRFLR-SHGPDAKLLA 122

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 279 IGQGGFGKVY----KGVLSDNTK--VAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQ 332
           +G+G FGKV+      +L +  K  VAVK L++  S      FQRE  L+++  H+++++
Sbjct: 20  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA-SESARQDFQREAELLTMLQHQHIVR 78
Query: 333 LIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKIIS 371
             G CT     ++V+ +M++  +   LR SH    K+++
Sbjct: 79  FFGVCTEGRPLLMVFEYMRHGDLNRFLR-SHGPDAKLLA 116

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 279 IGQGGFGKVY----KGVLSDNTK--VAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQ 332
           +G+G FGKV+      +L +  K  VAVK L++  S      FQRE  L+++  H+++++
Sbjct: 49  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA-SESARQDFQREAELLTMLQHQHIVR 107
Query: 333 LIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKIIS 371
             G CT     ++V+ +M++  +   LR SH    K+++
Sbjct: 108 FFGVCTEGRPLLMVFEYMRHGDLNRFLR-SHGPDAKLLA 145

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 267 QLATDNFSESNIIGQGGFGKVYKGVLSDNTK----VAVKRLQDYYSPGGEAAFQREVHLI 322
           +L   N S   ++G G FG+V  G L   +K    VA+K L+  Y+      F  E  ++
Sbjct: 41  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 100
Query: 323 SVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKI 369
               H N+++L G  T S   ++V  +M+N S+   LR     +T I
Sbjct: 101 GQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVI 147

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 267 QLATDNFSESNIIGQGGFGKVYKGVLSDNTK----VAVKRLQDYYSPGGEAAFQREVHLI 322
           +L   N S   ++G G FG+V  G L   +K    VA+K L+  Y+      F  E  ++
Sbjct: 41  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 100
Query: 323 SVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKI 369
               H N+++L G  T S   ++V  +M+N S+   LR     +T I
Sbjct: 101 GQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVI 147

>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 279 IGQGGFGKVYKGVLS------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQ 332
           +G G FG+VY+G +S         +VAVK L + YS   E  F  E  +IS   H+N+++
Sbjct: 53  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVYSEQDELDFLMEALIISKFNHQNIVR 112
Query: 333 LIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKIISLSSL 375
            IG    S  R ++   M    +   LR +    ++  SL+ L
Sbjct: 113 CIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAML 155

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 267 QLATDNFSESNIIGQGGFGKVYKGVLSDNTK----VAVKRLQDYYSPGGEAAFQREVHLI 322
           +L   N S   ++G G FG+V  G L   +K    VA+K L+  Y+      F  E  ++
Sbjct: 41  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 100
Query: 323 SVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKI 369
               H N+++L G  T S   ++V  +M+N S+   LR     +T I
Sbjct: 101 GQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVI 147

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 267 QLATDNFSESNIIGQGGFGKVYKGVLSDNTK----VAVKRLQDYYSPGGEAAFQREVHLI 322
           +L   N S   ++G G FG+V  G L   +K    VA+K L+  Y+      F  E  ++
Sbjct: 41  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 100
Query: 323 SVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKI 369
               H N+++L G  T S   ++V  +M+N S+   LR     +T I
Sbjct: 101 GQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVI 147

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 267 QLATDNFSESNIIGQGGFGKVYKGVLSDNTK----VAVKRLQDYYSPGGEAAFQREVHLI 322
           +L   N S   ++G G FG+V  G L   +K    VA+K L+  Y+      F  E  ++
Sbjct: 29  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 88
Query: 323 SVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKI 369
               H N+++L G  T S   ++V  +M+N S+   LR     +T I
Sbjct: 89  GQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVI 135

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 267 QLATDNFSESNIIGQGGFGKVYKGVLSDNTK----VAVKRLQDYYSPGGEAAFQREVHLI 322
           +L   N S   ++G G FG+V  G L   +K    VA+K L+  Y+      F  E  ++
Sbjct: 41  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 100
Query: 323 SVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKI 369
               H N+++L G  T S   ++V  +M+N S+   LR     +T I
Sbjct: 101 GQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVI 147

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 267 QLATDNFSESNIIGQGGFGKVYKGVLSDNTK----VAVKRLQDYYSPGGEAAFQREVHLI 322
           +L   N S   ++G G FG+V  G L   +K    VA+K L+  Y+      F  E  ++
Sbjct: 41  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 100
Query: 323 SVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKI 369
               H N+++L G  T S   ++V  +M+N S+   LR     +T I
Sbjct: 101 GQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVI 147

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 267 QLATDNFSESNIIGQGGFGKVYKGVLSDNTK----VAVKRLQDYYSPGGEAAFQREVHLI 322
           +L   N S   ++G G FG+V  G L   +K    VA+K L+  Y+      F  E  ++
Sbjct: 12  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 71
Query: 323 SVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKI 369
               H N+++L G  T S   ++V  +M+N S+   LR     +T I
Sbjct: 72  GQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVI 118

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 7/116 (6%)
Query: 258 LRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTK----VAVKRLQDYYSPGGEA 313
           +R F+ +E+ ++     E  +IG G FG+V +G L    K    VA+K L+  Y+     
Sbjct: 6   VREFA-KEIDVSYVKIEE--VIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRR 62
Query: 314 AFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKI 369
            F  E  ++    H N+++L G  T S   +++  FM+N ++   LR++   +T I
Sbjct: 63  EFLSEASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTVI 118

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 267 QLATDNFSESNIIGQGGFGKVYKGVLSDNTK----VAVKRLQDYYSPGGEAAFQREVHLI 322
           +L   N S   ++G G FG+V  G L   +K    VA+K L+  Y+      F  E  ++
Sbjct: 39  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 98
Query: 323 SVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKI 369
               H N+++L G  T S   ++V  +M+N S+   LR     +T I
Sbjct: 99  GQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVI 145

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 267 QLATDNFSESNIIGQGGFGKVYKGVLSDNTK----VAVKRLQDYYSPGGEAAFQREVHLI 322
           +L   N S   ++G G FG+V  G L   +K    VA+K L+  Y+      F  E  ++
Sbjct: 41  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 100
Query: 323 SVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKI 369
               H N+++L G  T S   ++V  +M+N S+   LR     +T I
Sbjct: 101 GQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVI 147

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 276 SNIIGQGGFGKVYKGVLSDNTK----VAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLL 331
             +IG G FG+V +G L    K    VA+K L+  Y+      F  E  ++    H N++
Sbjct: 19  EEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNII 78
Query: 332 QLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKI 369
           +L G  T S   +++  FM+N ++   LR++   +T I
Sbjct: 79  RLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTVI 116

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 279 IGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCT 338
           IG G FG V+ G   +  KVA+K +++      E  F  E  ++    H  L+QL G C 
Sbjct: 15  IGSGQFGLVHLGYWLNKDKVAIKTIRE--GAMSEEDFIEEAEVMMKLSHPKLVQLYGVCL 72
Query: 339 TSSERILVYPFMQNLSVAYRLRVSHKIYT 367
             +   LV+ FM++  ++  LR    ++ 
Sbjct: 73  EQAPICLVFEFMEHGCLSDYLRTQRGLFA 101

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 279 IGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCT 338
           IG G FG V+ G   +  KVA+K +++      E  F  E  ++    H  L+QL G C 
Sbjct: 13  IGSGQFGLVHLGYWLNKDKVAIKTIRE--GAMSEEDFIEEAEVMMKLSHPKLVQLYGVCL 70
Query: 339 TSSERILVYPFMQNLSVAYRLRVSHKIYT 367
             +   LV+ FM++  ++  LR    ++ 
Sbjct: 71  EQAPICLVFEFMEHGCLSDYLRTQRGLFA 99

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 279 IGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCT 338
           IG G FG V+ G   +  KVA+K +++      E  F  E  ++    H  L+QL G C 
Sbjct: 18  IGSGQFGLVHLGYWLNKDKVAIKTIRE--GAMSEEDFIEEAEVMMKLSHPKLVQLYGVCL 75
Query: 339 TSSERILVYPFMQNLSVAYRLRVSHKIYT 367
             +   LV+ FM++  ++  LR    ++ 
Sbjct: 76  EQAPICLVFEFMEHGCLSDYLRTQRGLFA 104

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 274 SESNIIGQGGFGKVYKGVLSDNT-----KVAVKRLQDYYSPGGEAAFQREVHLISVAIHK 328
           +   +IG G FG+VYKG+L  ++      VA+K L+  Y+      F  E  ++    H 
Sbjct: 47  TRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHH 106
Query: 329 NLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
           N+++L G  +     +++  +M+N ++   LR
Sbjct: 107 NIIRLEGVISKYKPMMIITEYMENGALDKFLR 138

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 279 IGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCT 338
           IG G FG V+ G   +  KVA+K +++      E  F  E  ++    H  L+QL G C 
Sbjct: 15  IGSGQFGLVHLGYWLNKDKVAIKTIRE--GAMSEEDFIEEAEVMMKLSHPKLVQLYGVCL 72
Query: 339 TSSERILVYPFMQNLSVAYRLRVSHKIYT 367
             +   LV+ FM++  ++  LR    ++ 
Sbjct: 73  EQAPICLVFEFMEHGCLSDYLRTQRGLFA 101

>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An Imidazo[2,1-B]thiazole Inhibitor Length = 327

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 268 LATDNFSESNIIGQGGFGKVYKGV-LSDNTKV----AVKRLQDYYSPGGEAAFQREVHLI 322
           L    F +  ++G G FG VYKG+ + +  KV    A+K L++  SP        E +++
Sbjct: 12  LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM 71
Query: 323 SVAIHKNLLQLIGYCTTSSERIL--VYPF 349
           +   + ++ +L+G C TS+ +++  + PF
Sbjct: 72  ASVDNPHVCRLLGICLTSTVQLITQLMPF 100

>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285 Length = 331

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 268 LATDNFSESNIIGQGGFGKVYKGV-LSDNTKV----AVKRLQDYYSPGGEAAFQREVHLI 322
           L    F +  ++G G FG VYKG+ + +  KV    A+K L++  SP        E +++
Sbjct: 16  LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM 75
Query: 323 SVAIHKNLLQLIGYCTTSSERILV 346
           +   + ++ +L+G C TS+ ++++
Sbjct: 76  ASVDNPHVCRLLGICLTSTVQLIM 99

>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Complex With Aee788 Length = 328

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 268 LATDNFSESNIIGQGGFGKVYKGV-LSDNTKV----AVKRLQDYYSPGGEAAFQREVHLI 322
           L    F +  ++G G FG VYKG+ + +  KV    A+K L++  SP        E +++
Sbjct: 13  LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM 72
Query: 323 SVAIHKNLLQLIGYCTTSSERILV 346
           +   + ++ +L+G C TS+ ++++
Sbjct: 73  ASVDNPHVCRLLGICLTSTVQLIM 96

>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 268 LATDNFSESNIIGQGGFGKVYKGV-LSDNTKV----AVKRLQDYYSPGGEAAFQREVHLI 322
           L    F +  ++G G FG VYKG+ + +  KV    A+K L++  SP        E +++
Sbjct: 15  LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM 74
Query: 323 SVAIHKNLLQLIGYCTTSSERILV 346
           +   + ++ +L+G C TS+ ++++
Sbjct: 75  ASVDNPHVCRLLGICLTSTVQLIM 98

>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation Length = 327

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 268 LATDNFSESNIIGQGGFGKVYKGV-LSDNTKV----AVKRLQDYYSPGGEAAFQREVHLI 322
           L    F +  ++G G FG VYKG+ + +  KV    A+K L++  SP        E +++
Sbjct: 12  LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM 71
Query: 323 SVAIHKNLLQLIGYCTTSSERILV 346
           +   + ++ +L+G C TS+ ++++
Sbjct: 72  ASVDNPHVCRLLGICLTSTVQLIM 95

>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently Binding To Wz4002 Length = 331

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 268 LATDNFSESNIIGQGGFGKVYKGV-LSDNTKV----AVKRLQDYYSPGGEAAFQREVHLI 322
           L    F +  ++G G FG VYKG+ + +  KV    A+K L++  SP        E +++
Sbjct: 16  LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM 75
Query: 323 SVAIHKNLLQLIGYCTTSSERILV 346
           +   + ++ +L+G C TS+ ++++
Sbjct: 76  ASVDNPHVCRLLGICLTSTVQLIM 99

>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase Domain With Erlotinib Length = 337

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 268 LATDNFSESNIIGQGGFGKVYKGV-LSDNTKV----AVKRLQDYYSPGGEAAFQREVHLI 322
           L    F +  ++G G FG VYKG+ + +  KV    A+K L++  SP        E +++
Sbjct: 22  LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM 81
Query: 323 SVAIHKNLLQLIGYCTTSSERIL--VYPF 349
           +   + ++ +L+G C TS+ +++  + PF
Sbjct: 82  ASVDNPHVCRLLGICLTSTVQLITQLMPF 110

>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor Length = 315

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 268 LATDNFSESNIIGQGGFGKVYKGV-LSDNTKV----AVKRLQDYYSPGGEAAFQREVHLI 322
           L    F +  ++G G FG VYKG+ + +  KV    A+K L++  SP        E +++
Sbjct: 6   LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM 65
Query: 323 SVAIHKNLLQLIGYCTTSSERIL--VYPF 349
           +   + ++ +L+G C TS+ +++  + PF
Sbjct: 66  ASVDNPHVCRLLGICLTSTVQLITQLMPF 94

>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With Dacomitinib Length = 329

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 268 LATDNFSESNIIGQGGFGKVYKGV-LSDNTKV----AVKRLQDYYSPGGEAAFQREVHLI 322
           L    F +  ++G G FG VYKG+ + +  KV    A+K L++  SP        E +++
Sbjct: 14  LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM 73
Query: 323 SVAIHKNLLQLIGYCTTSSERILV 346
           +   + ++ +L+G C TS+ ++++
Sbjct: 74  ASVDNPHVCRLLGICLTSTVQLIM 97

>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Compex With Hki-272 Length = 328

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 268 LATDNFSESNIIGQGGFGKVYKGV-LSDNTKV----AVKRLQDYYSPGGEAAFQREVHLI 322
           L    F +  ++G G FG VYKG+ + +  KV    A+K L++  SP        E +++
Sbjct: 13  LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM 72
Query: 323 SVAIHKNLLQLIGYCTTSSERILV 346
           +   + ++ +L+G C TS+ ++++
Sbjct: 73  ASVDNPHVCRLLGICLTSTVQLIM 96

>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase Domain And A Mig6 Peptide Length = 324

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 268 LATDNFSESNIIGQGGFGKVYKGV-LSDNTKV----AVKRLQDYYSPGGEAAFQREVHLI 322
           L    F +  ++G G FG VYKG+ + +  KV    A+K L++  SP        E +++
Sbjct: 9   LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM 68
Query: 323 SVAIHKNLLQLIGYCTTSSERIL--VYPF 349
           +   + ++ +L+G C TS+ +++  + PF
Sbjct: 69  ASVDNPHVCRLLGICLTSTVQLITQLMPF 97

>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 268 LATDNFSESNIIGQGGFGKVYKGV-LSDNTKV----AVKRLQDYYSPGGEAAFQREVHLI 322
           L    F +  ++G G FG VYKG+ + +  KV    A+K L++  SP        E +++
Sbjct: 15  LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM 74
Query: 323 SVAIHKNLLQLIGYCTTSSERIL--VYPF 349
           +   + ++ +L+G C TS+ +++  + PF
Sbjct: 75  ASVDNPHVCRLLGICLTSTVQLITQLMPF 103

>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In Complex With Dacomitinib (soaked) Length = 329

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 268 LATDNFSESNIIGQGGFGKVYKGV-LSDNTKV----AVKRLQDYYSPGGEAAFQREVHLI 322
           L    F +  ++G G FG VYKG+ + +  KV    A+K L++  SP        E +++
Sbjct: 14  LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM 73
Query: 323 SVAIHKNLLQLIGYCTTSSERIL--VYPF 349
           +   + ++ +L+G C TS+ +++  + PF
Sbjct: 74  ASVDNPHVCRLLGICLTSTVQLITQLMPF 102

>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In Complex With Mig6 Peptide Length = 329

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 268 LATDNFSESNIIGQGGFGKVYKGV-LSDNTKV----AVKRLQDYYSPGGEAAFQREVHLI 322
           L    F +  ++G G FG VYKG+ + +  KV    A+K L++  SP        E +++
Sbjct: 14  LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM 73
Query: 323 SVAIHKNLLQLIGYCTTSSERILV 346
           +   + ++ +L+G C TS+ ++++
Sbjct: 74  ASVDNPHVCRLLGICLTSTVQLIM 97

>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor Receptor Length = 333

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 268 LATDNFSESNIIGQGGFGKVYKGV-LSDNTKV----AVKRLQDYYSPGGEAAFQREVHLI 322
           L    F +  ++G G FG VYKG+ + +  KV    A+K L++  SP        E +++
Sbjct: 18  LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM 77
Query: 323 SVAIHKNLLQLIGYCTTSSERIL--VYPF 349
           +   + ++ +L+G C TS+ +++  + PF
Sbjct: 78  ASVDNPHVCRLLGICLTSTVQLITQLMPF 106

>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain Length = 330

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 268 LATDNFSESNIIGQGGFGKVYKGV-LSDNTKV----AVKRLQDYYSPGGEAAFQREVHLI 322
           L    F +  ++G G FG VYKG+ + +  KV    A+K L++  SP        E +++
Sbjct: 15  LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM 74
Query: 323 SVAIHKNLLQLIGYCTTSSERIL--VYPF 349
           +   + ++ +L+G C TS+ +++  + PF
Sbjct: 75  ASVDNPHVCRLLGICLTSTVQLITQLMPF 103

>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The Gefitinib/erlotinib Resistant Egfr Kinase Domain L858r+t790m Length = 329

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 268 LATDNFSESNIIGQGGFGKVYKGV-LSDNTKV----AVKRLQDYYSPGGEAAFQREVHLI 322
           L    F +  ++G G FG VYKG+ + +  KV    A+K L++  SP        E +++
Sbjct: 14  LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM 73
Query: 323 SVAIHKNLLQLIGYCTTSSERILV 346
           +   + ++ +L+G C TS+ ++++
Sbjct: 74  ASVDNPHVCRLLGICLTSTVQLIM 97

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 279 IGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCT 338
           IG G FG V+ G   +  KVA+K +++      E  F  E  ++    H  L+QL G C 
Sbjct: 35  IGSGQFGLVHLGYWLNKDKVAIKTIKE--GSMSEDDFIEEAEVMMKLSHPKLVQLYGVCL 92
Query: 339 TSSERILVYPFMQNLSVAYRLRVSHKIYT 367
             +   LV+ FM++  ++  LR    ++ 
Sbjct: 93  EQAPICLVFEFMEHGCLSDYLRTQRGLFA 121

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 267 QLATDNFSESNIIGQGGFGKVYKGVLSDNTK----VAVKRLQDYYSPGGEAAFQREVHLI 322
           +L   N S   ++G G FG+V  G L   +K    VA+K L+  Y+      F  E  ++
Sbjct: 41  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 100
Query: 323 SVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKI 369
               H N+++L G  T S   ++V   M+N S+   LR     +T I
Sbjct: 101 GQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVI 147

>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In Complex With Amp-Pnp Length = 330

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 268 LATDNFSESNIIGQGGFGKVYKGV-LSDNTKV----AVKRLQDYYSPGGEAAFQREVHLI 322
           L    F +  ++G G FG VYKG+ + +  KV    A+K L++  SP        E +++
Sbjct: 15  LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM 74
Query: 323 SVAIHKNLLQLIGYCTTSSERIL--VYPF 349
           +   + ++ +L+G C TS+ +++  + PF
Sbjct: 75  ASVDNPHVCRLLGICLTSTVQLITQLMPF 103

>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In Complex With Aee788 Length = 327

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 268 LATDNFSESNIIGQGGFGKVYKGV-LSDNTKV----AVKRLQDYYSPGGEAAFQREVHLI 322
           L    F +  ++G G FG VYKG+ + +  KV    A+K L++  SP        E +++
Sbjct: 12  LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM 71
Query: 323 SVAIHKNLLQLIGYCTTSSERIL--VYPF 349
           +   + ++ +L+G C TS+ +++  + PF
Sbjct: 72  ASVDNPHVCRLLGICLTSTVQLITQLMPF 100

>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 34-Jab Length = 327

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 268 LATDNFSESNIIGQGGFGKVYKGV-LSDNTKV----AVKRLQDYYSPGGEAAFQREVHLI 322
           L    F +  ++G G FG VYKG+ + +  KV    A+K L++  SP        E +++
Sbjct: 12  LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM 71
Query: 323 SVAIHKNLLQLIGYCTTSSERIL--VYPF 349
           +   + ++ +L+G C TS+ +++  + PF
Sbjct: 72  ASVDNPHVCRLLGICLTSTVQLITQLMPF 100

>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 13-Jab Length = 327

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 268 LATDNFSESNIIGQGGFGKVYKGV-LSDNTKV----AVKRLQDYYSPGGEAAFQREVHLI 322
           L    F +  ++G G FG VYKG+ + +  KV    A+K L++  SP        E +++
Sbjct: 12  LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM 71
Query: 323 SVAIHKNLLQLIGYCTTSSERIL--VYPF 349
           +   + ++ +L+G C TS+ +++  + PF
Sbjct: 72  ASVDNPHVCRLLGICLTSTVQLITQLMPF 100

>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In Complex With Amppnp Length = 334

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 268 LATDNFSESNIIGQGGFGKVYKGV-LSDNTKV----AVKRLQDYYSPGGEAAFQREVHLI 322
           L    F +  ++G G FG VYKG+ + +  KV    A+K L++  SP        E +++
Sbjct: 19  LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM 78
Query: 323 SVAIHKNLLQLIGYCTTSSERIL--VYPF 349
           +   + ++ +L+G C TS+ +++  + PF
Sbjct: 79  ASVDNPHVCRLLGICLTSTVQLITQLMPF 107

>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In Complex With Amppnp Length = 334

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 268 LATDNFSESNIIGQGGFGKVYKGV-LSDNTKV----AVKRLQDYYSPGGEAAFQREVHLI 322
           L    F +  ++G G FG VYKG+ + +  KV    A+K L++  SP        E +++
Sbjct: 19  LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM 78
Query: 323 SVAIHKNLLQLIGYCTTSSERIL--VYPF 349
           +   + ++ +L+G C TS+ +++  + PF
Sbjct: 79  ASVDNPHVCRLLGICLTSTVQLITQLMPF 107

>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic Mutant L858r Egfr Kinase Domain Length = 329

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 268 LATDNFSESNIIGQGGFGKVYKGV-LSDNTKV----AVKRLQDYYSPGGEAAFQREVHLI 322
           L    F +  ++G G FG VYKG+ + +  KV    A+K L++  SP        E +++
Sbjct: 14  LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM 73
Query: 323 SVAIHKNLLQLIGYCTTSSERIL--VYPF 349
           +   + ++ +L+G C TS+ +++  + PF
Sbjct: 74  ASVDNPHVCRLLGICLTSTVQLITQLMPF 102

>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor- Gw572016 Length = 352

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 268 LATDNFSESNIIGQGGFGKVYKGV-LSDNTKV----AVKRLQDYYSPGGEAAFQREVHLI 322
           L    F +  ++G G FG VYKG+ + +  KV    A+K L++  SP        E +++
Sbjct: 37  LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM 96
Query: 323 SVAIHKNLLQLIGYCTTSSERIL--VYPF 349
           +   + ++ +L+G C TS+ +++  + PF
Sbjct: 97  ASVDNPHVCRLLGICLTSTVQLITQLMPF 125

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 276 SNIIGQGGFGKVYKGVLSDNTK----VAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLL 331
             +IG G FG+V  G L    K    VA+K L+  Y+      F  E  ++    H N++
Sbjct: 38  EQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVI 97
Query: 332 QLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKI 369
            L G  T S+  +++  FM+N S+   LR +   +T I
Sbjct: 98  HLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVI 135

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 267 QLATDNFSESNIIGQGGFGKVYKGVLSDNTK----VAVKRLQDYYSPGGEAAFQREVHLI 322
           +L   N S   ++G G FG+V  G L   +K    VA+K L+  Y+      F  E  ++
Sbjct: 12  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 71
Query: 323 SVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKI 369
               H N+++L G  T S   ++V   M+N S+   LR     +T I
Sbjct: 72  GQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVI 118

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 267 QLATDNFSESNIIGQGGFGKVYKGVLSDNTK----VAVKRLQDYYSPGGEAAFQREVHLI 322
           +L   N S   ++G G FG+V  G L   +K    VA+K L+  Y+      F  E  ++
Sbjct: 41  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 100
Query: 323 SVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKI 369
               H N+++L G  T S   ++V   M+N S+   LR     +T I
Sbjct: 101 GQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVI 147

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 251 CKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPG 310
           C  S  Q +  +    ++  ++      +GQG FG+V+ G  +  T+VA+K L+    PG
Sbjct: 165 CPTSKPQTQGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLK----PG 220
Query: 311 G--EAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV 346
                AF +E  ++    H+ L+QL  Y   S E I +
Sbjct: 221 NMSPEAFLQEAQVMKKLRHEKLVQL--YAVVSEEPIYI 256

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 247 GEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQ-D 305
           G +D     T  RR S  + ++     +    IG G FG VYKG    +  VAVK L   
Sbjct: 12  GSEDRNRMKTLGRRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVT 69
Query: 306 YYSPGGEAAFQREVHLISVAIHKNLLQLIGYCT 338
             +P    AF+ EV ++    H N+L  +GY T
Sbjct: 70  APTPQQLQAFKNEVGVLRKTRHVNILLFMGYST 102

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 276 SNIIGQGGFGKVYKGVLSDNTK----VAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLL 331
             +IG G FG+V  G L    K    VA+K L+  Y+      F  E  ++    H N++
Sbjct: 12  EQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVI 71
Query: 332 QLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKI 369
            L G  T S+  +++  FM+N S+   LR +   +T I
Sbjct: 72  HLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVI 109

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 251 CKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPG 310
           C  S  Q +  +    ++  ++      +GQG FG+V+ G  +  T+VA+K L+    PG
Sbjct: 164 CPTSKPQTQGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLK----PG 219
Query: 311 --GEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV 346
                AF +E  ++    H+ L+QL  Y   S E I +
Sbjct: 220 TMSPEAFLQEAQVMKKLRHEKLVQL--YAVVSEEPIYI 255

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 247 GEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQ-D 305
           G +D     T  RR S  + ++     +    IG G FG VYKG    +  VAVK L   
Sbjct: 12  GSEDRNRMKTLGRRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVT 69
Query: 306 YYSPGGEAAFQREVHLISVAIHKNLLQLIGYCT 338
             +P    AF+ EV ++    H N+L  +GY T
Sbjct: 70  APTPQQLQAFKNEVGVLRKTRHVNILLFMGYST 102

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 251 CKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPG 310
           C  S  Q +  +    ++  ++      +GQG FG+V+ G  +  T+VA+K L+    PG
Sbjct: 164 CPTSKPQTQGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLK----PG 219
Query: 311 --GEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV 346
                AF +E  ++    H+ L+QL  Y   S E I +
Sbjct: 220 TMSPEAFLQEAQVMKKLRHEKLVQL--YAVVSEEPIYI 255

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 261 FSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNT-KVAVKRLQDYYSPGGEAAFQREV 319
            S  + ++   + +  + +G G FG+VY+GV    +  VAVK L++      E  F +E 
Sbjct: 1   MSLDKWEMERTDITMKHKLGGGQFGEVYEGVWKKYSLTVAVKTLKEDTMEVEE--FLKEA 58
Query: 320 HLISVAIHKNLLQLIGYCTTSSERILVYPFM 350
            ++    H NL+QL+G CT      ++  FM
Sbjct: 59  AVMKEIKHPNLVQLLGVCTREPPFYIITEFM 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	380
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	8e-59
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	4e-41
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	1e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-33
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-28
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-26
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-24
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-20
3soc_A	322	Activin receptor type-2A; structural genomics cons	4e-20
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	7e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-05
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	2e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	4e-14
3pls_A	298	Macrophage-stimulating protein receptor; protein k	5e-14
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	5e-14
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	6e-14
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	1e-13
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	1e-13
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	2e-13
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	2e-13
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	2e-13
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	3e-13
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	3e-13
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	3e-13
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	3e-13
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	3e-13
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	4e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-09
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	5e-13
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	6e-13
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	7e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	8e-13
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	9e-13
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	9e-13
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	1e-12
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	1e-12
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	1e-12
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	2e-12
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	2e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-07
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	3e-12
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	3e-12
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	3e-12
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	3e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-08
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	4e-12
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	4e-12
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	5e-12
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	5e-12
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	5e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-04
3q4u_A	301	Activin receptor type-1; structural genomics conso	9e-12
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	1e-11
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	1e-11
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	1e-11
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	1e-11
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	1e-11
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	1e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	2e-11
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	2e-11
4aoj_A	329	High affinity nerve growth factor receptor; transf	2e-11
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	2e-11
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	2e-11
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	3e-11
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	3e-11
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	4e-11
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	5e-11
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	5e-11
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	5e-11
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	5e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	9e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	1e-10
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	1e-10
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	1e-10
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	2e-10
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	2e-10
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	2e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-04
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	3e-10
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	4e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-04
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	8e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-06
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-05
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-06
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	9e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-04
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	2e-06
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	2e-06
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-04
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-04
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	3e-06
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	4e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-05
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	6e-06
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	6e-06
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	6e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-04
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	3e-05
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	3e-05
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	3e-05
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	4e-05
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	4e-05
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	4e-05
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	5e-05
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	5e-05
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-04
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	9e-05
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	9e-05
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	9e-05
3bhy_A	283	Death-associated protein kinase 3; death associate	1e-04
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	1e-04
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	1e-04
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-04
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-04
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	2e-04
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	2e-04
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	2e-04
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	2e-04
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	2e-04
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	2e-04
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	2e-04
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	2e-04
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	2e-04
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	2e-04
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	2e-04
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	3e-04
2a19_B	284	Interferon-induced, double-stranded RNA-activated	3e-04
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	3e-04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	3e-04
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	4e-04
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	4e-04
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	4e-04
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	4e-04
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	4e-04
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	5e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-04
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	8e-04

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  192 bits (491), Expect = 8e-59
 Identities = 74/119 (62%), Positives = 94/119 (78%)

Query: 242 FFDVAGEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVK 301
           FFDV  E+D +V L QL+RFS RELQ+A+DNFS  NI+G+GGFGKVYKG L+D T VAVK
Sbjct: 1   FFDVPAEEDPEVHLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVK 60

Query: 302 RLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
           RL++  + GGE  FQ EV +IS+A+H+NLL+L G+C T +ER+LVYP+M N SVA  LR
Sbjct: 61  RLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLR 119

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  146 bits (370), Expect = 4e-41
 Identities = 44/121 (36%), Positives = 69/121 (57%), Gaps = 10/121 (8%)

Query: 248 EDDCKVSLTQLRRFSCRELQLATDNFSE------SNIIGQGGFGKVYKGVLSDNTKVAVK 301
               +VS T+   FS  EL+  T+NF E       N +G+GGFG VYKG + +NT VAVK
Sbjct: 2   NKSLEVSDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVK 60

Query: 302 RL---QDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYR 358
           +L    D  +   +  F +E+ +++   H+NL++L+G+ +   +  LVY +M N S+  R
Sbjct: 61  KLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDR 120

Query: 359 L 359
           L
Sbjct: 121 L 121

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  142 bits (361), Expect = 1e-39
 Identities = 42/104 (40%), Positives = 60/104 (57%), Gaps = 1/104 (0%)

Query: 256 TQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAF 315
            +  R    +L+ AT+NF    +IG G FGKVYKGVL D  KVA+KR     S  G   F
Sbjct: 24  FESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTP-ESSQGIEEF 82

Query: 316 QREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRL 359
           + E+  +S   H +L+ LIG+C   +E IL+Y +M+N ++   L
Sbjct: 83  ETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHL 126

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  126 bits (318), Expect = 1e-33
 Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 34/167 (20%)

Query: 36  EGEALIEVLKALNDTHGQFTDWNDHFVSPCF-SWSHVTC----RNGNVISLTLGS----- 85
           + +AL+++ K L +     + W       C  +W  V C    +   V +L L       
Sbjct: 7   DKQALLQIKKDLGN-PTTLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK 64

Query: 86  ----------------------NGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSM 123
                                 N   G I P+I KL  L  L +   ++SG +PDFL  +
Sbjct: 65  PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124

Query: 124 THLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
             L +L+ + N  SG++P + S L NL  +    N ++G IP    S
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  111 bits (280), Expect = 3e-28
 Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 4/119 (3%)

Query: 75  NGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANN 134
           N N+  + L  N   G  S      K    + L  N L+  L   +G   +L  L+L NN
Sbjct: 196 NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN 254

Query: 135 KFSGSIPATWSQLSNLKHLDLSSNNLTGRIPM--QLFSVATFNFTGTHLICGSSLEQPC 191
           +  G++P   +QL  L  L++S NNL G IP    L       +     +CGS L   C
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL-PAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  105 bits (265), Expect = 4e-26
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            +  L +     SG I   ++++K L +L+   N LSGTLP  + S+ +L  +    N+ 
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 137 SGSIPATWSQLSNL-KHLDLSSNNLTGRIPMQLFS 170
           SG+IP ++   S L   + +S N LTG+IP    +
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  100 bits (251), Expect = 3e-24
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 78  VISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFS 137
             S+T+  N  +GKI P+   L  LA ++L  N L G      GS  + Q ++LA N  +
Sbjct: 176 FTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 138 GSIPATWSQLSNLKHLDLSSNNLTGRIPMQL 168
             +        NL  LDL +N + G +P  L
Sbjct: 235 FDLG-KVGLSKNLNGLDLRNNRIYGTLPQGL 264

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =   99 bits (250), Expect = 5e-24
 Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 81  LTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHL-QSLNLANNKFSGS 139
           L    N  SG + PSI+ L  L  +    N +SG +PD  GS + L  S+ ++ N+ +G 
Sbjct: 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189

Query: 140 IPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           IP T++ L NL  +DLS N L G   +   S
Sbjct: 190 IPPTFANL-NLAFVDLSRNMLEGDASVLFGS 219

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  123 bits (311), Expect = 7e-31
 Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 9/150 (6%)

Query: 26  FGHSSREPDVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWSHVTCRNGNVISLTLGS 85
               S+    E   LI     L D      DW+ +  +PC ++  VTCR+  V S+ L S
Sbjct: 3   QASPSQSLYREIHQLISFKDVLPD-KNLLPDWSSN-KNPC-TFDGVTCRDDKVTSIDLSS 59

Query: 86  NGFS---GKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPA 142
              +     +S S+  L  L SL L ++ ++G++  F      L SL+L+ N  SG +  
Sbjct: 60  KPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGF-KCSASLTSLDLSRNSLSGPVTT 118

Query: 143 TWS--QLSNLKHLDLSSNNLTGRIPMQLFS 170
             S    S LK L++SSN L     +    
Sbjct: 119 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  112 bits (283), Expect = 2e-27
 Identities = 32/98 (32%), Positives = 52/98 (53%)

Query: 73  CRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLA 132
                + +L L  N  +G+I   ++    L  + L +N L+G +P ++G + +L  L L+
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522

Query: 133 NNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           NN FSG+IPA      +L  LDL++N   G IP  +F 
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  111 bits (279), Expect = 9e-27
 Identities = 39/93 (41%), Positives = 52/93 (55%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            +  L L +NGF+GKI P+++    L SL L  N LSGT+P  LGS++ L+ L L  N  
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLF 169
            G IP     +  L+ L L  N+LTG IP  L 
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  110 bits (277), Expect = 1e-26
 Identities = 47/133 (35%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 76  GNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
           G+++ L +  N  SG I   I  + +L  L L  ND+SG++PD +G +  L  L+L++NK
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691

Query: 136 FSGSIPATWSQLSNLKHLDLSSNNLTGRIP-MQLFSVATFN---FTGTHLICGSSLEQPC 191
             G IP   S L+ L  +DLS+NNL+G IP M  F   TF    F     +CG  L +  
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE--TFPPAKFLNNPGLCGYPLPRCD 749

Query: 192 MSRPSPPVSTSRT 204
            S         R+
Sbjct: 750 PSNADGYAHHQRS 762

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  108 bits (273), Expect = 5e-26
 Identities = 35/93 (37%), Positives = 48/93 (51%)

Query: 73  CRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLA 132
                ++SL L  N  SG I  S+  L  L  L+L  N L G +P  L  +  L++L L 
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 133 NNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIP 165
            N  +G IP+  S  +NL  + LS+N LTG IP
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  107 bits (269), Expect = 2e-25
 Identities = 34/98 (34%), Positives = 53/98 (54%)

Query: 73  CRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLA 132
                +  L L  N   G+I   +  +K L +L L  NDL+G +P  L + T+L  ++L+
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498

Query: 133 NNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           NN+ +G IP    +L NL  L LS+N+ +G IP +L  
Sbjct: 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  105 bits (265), Expect = 6e-25
 Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 2/97 (2%)

Query: 76  GNVISLTLGSNGFSGKISPSI--TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLAN 133
            ++++L L SN FSG I P++       L  L LQ+N  +G +P  L + + L SL+L+ 
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427

Query: 134 NKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           N  SG+IP++   LS L+ L L  N L G IP +L  
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  102 bits (256), Expect = 8e-24
 Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 80  SLTLGSNGFSGKISPSIT-KLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSG 138
            L+L  N F+G+I   ++     L  L+L  N   G +P F GS + L+SL L++N FSG
Sbjct: 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332

Query: 139 SIPATW-SQLSNLKHLDLSSNNLTGRIPMQLFS 170
            +P     ++  LK LDLS N  +G +P  L +
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 365

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  101 bits (253), Expect = 2e-23
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            +  L +  N  SG +   +++   L  L++  N+ S  +P FLG  + LQ L+++ NK 
Sbjct: 179 ELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKL 235

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           SG      S  + LK L++SSN   G IP     
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK 269

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  100 bits (252), Expect = 3e-23
 Identities = 39/96 (40%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLP-DFLGSMTHLQSLNLANNK 135
            +  L L  N F G + P       L SL L  N+ SG LP D L  M  L+ L+L+ N+
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354

Query: 136 FSGSIPATWSQLS-NLKHLDLSSNNLTGRIPMQLFS 170
           FSG +P + + LS +L  LDLSSNN +G I   L  
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.9 bits (242), Expect = 5e-22
 Identities = 18/96 (18%), Positives = 33/96 (34%)

Query: 73  CRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLA 132
                          F G  S  + +L       +      G       +   +  L+++
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640

Query: 133 NNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQL 168
            N  SG IP     +  L  L+L  N+++G IP ++
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.1 bits (240), Expect = 1e-21
 Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 3/92 (3%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFL-GSMTHLQSLNLANNKFSG 138
            L + SN F G I P    LK L  L L +N  +G +PDFL G+   L  L+L+ N F G
Sbjct: 251 LLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308

Query: 139 SIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           ++P  +   S L+ L LSSNN +G +PM    
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 92.7 bits (231), Expect = 2e-20
 Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 4/98 (4%)

Query: 73  CRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLA 132
               N+  ++L +N  +G+I   I +L+ LA L+L +N  SG +P  LG    L  L+L 
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546

Query: 133 NNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
            N F+G+IPA   + S      +++N + G+  + + +
Sbjct: 547 TNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKN 580

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 89.0 bits (221), Expect = 4e-20
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 11/106 (10%)

Query: 261 FSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQRE-- 318
                L   +       +  +G FG V+K  L  N  VAVK          + ++Q E  
Sbjct: 14  LGTENLYFQSMPLQLLEVKARGRFGCVWKAQL-LNEYVAVKIF----PIQDKQSWQNEYE 68

Query: 319 VHLISVAIHKNLLQLIGYCTTSS----ERILVYPFMQNLSVAYRLR 360
           V+ +    H+N+LQ IG     +    +  L+  F +  S++  L+
Sbjct: 69  VYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLK 114

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 85.7 bits (212), Expect = 7e-19
 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 12/119 (10%)

Query: 261 FSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQRE-- 318
            +  E  L  DN     +IG+G +G VYKG L D   VAVK      S      F  E  
Sbjct: 3   AAASEPSLDLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVF----SFANRQNFINEKN 57

Query: 319 VHLISVAIHKNLLQLIGYCTTSS-----ERILVYPFMQNLSVAYRLRVSHKIYTKIISL 372
           ++ + +  H N+ + I      +     E +LV  +  N S+   L +    +     L
Sbjct: 58  IYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHTSDWVSSCRL 116

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.5 bits (207), Expect = 1e-17
 Identities = 21/89 (23%), Positives = 32/89 (35%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           +  +L L  N      S S      L  L+L   ++         S++HL +L L  N  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIP 165
                  +S LS+L+ L     NL     
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLEN 117

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 81  LTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
           L +  N F     P I T+L+ L  L+L    L    P    S++ LQ LN+++N F   
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 140 IPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVAT 173
               +  L++L+ LD S N++      +L    +
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.1 bits (198), Expect = 1e-16
 Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLP-DFLGSMTHLQSLNLANNK 135
           ++  L L  NG    +S +   L+ L  L+ Q ++L          S+ +L  L++++  
Sbjct: 374 SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 136 FSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
              +    ++ LS+L+ L ++ N+        +F+
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.1 bits (193), Expect = 6e-16
 Identities = 17/91 (18%), Positives = 29/91 (31%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
            L L           +   L  L++L L  N +          ++ LQ L       +  
Sbjct: 56  VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115

Query: 140 IPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
                  L  LK L+++ N +      + FS
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 1/94 (1%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           N+  L L           +   L  L  L +  N+           +  LQ L+ + N  
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530

Query: 137 SGSIPATWSQL-SNLKHLDLSSNNLTGRIPMQLF 169
             S         S+L  L+L+ N+       Q F
Sbjct: 531 MTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSF 564

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 5/94 (5%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDL-SGTLPDFLGSMTHLQSLNLANNK 135
           ++  L       +   +  I  LK L  L +  N + S  LP++  ++T+L+ L+L++NK
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 136 FSGSIPATWSQLSNLK----HLDLSSNNLTGRIP 165
                      L  +      LDLS N +    P
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 6/99 (6%)

Query: 77  NVISLTLGSNGF-SGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQ----SLNL 131
            +  L +  N   S K+    + L  L  L+L  N +       L  +  +     SL+L
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 132 ANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           + N  +   P  + ++  L  L L +N  +  +      
Sbjct: 185 SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQ 222

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.7 bits (145), Expect = 7e-10
 Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 9/111 (8%)

Query: 75  NGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANN 134
           N     L L +  F          LK  +   L      G        +  L+ L+L+ N
Sbjct: 303 NFGWQHLELVNCKFGQ-----FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357

Query: 135 K--FSGSIPATWSQLSNLKHLDLSSNNLTGRIP--MQLFSVATFNFTGTHL 181
              F G    +    ++LK+LDLS N +       + L  +   +F  ++L
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 9/117 (7%)

Query: 78  VISLTLGSNGFSGKIS-PSITKLKFLASLELQDNDLS------GTLPDFLGSMTHLQSLN 130
           V  L LG     G +     + L+ L +L +++  L+        + D    +T++ S +
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288

Query: 131 LANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHLICGSSL 187
           L +          +S     +HL+L +        ++L S+    FT        S 
Sbjct: 289 LVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 343

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 10/104 (9%)

Query: 77  NVISLTLGSNGFSGKISP-SITKLKFLASLELQDNDLSGT---LPDFLGSMTHLQSLNLA 132
            +  LTL +N  S  +    I  L  L    L   +             ++  L +L + 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 133 NNKFS------GSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
             + +        I   ++ L+N+    L S  +          
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 104 SLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGR 163
           + +  + +    +PD L      ++L+L+ N        ++     L+ LDLS   +   
Sbjct: 11  TYQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 164 IP 165
             
Sbjct: 68  ED 69

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 16/107 (14%), Positives = 32/107 (29%), Gaps = 28/107 (26%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSM-THLQSLNLANNK 135
           ++  L +  N F    +     L  L  L+   N +  +    L    + L  LNL  N 
Sbjct: 495 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 554

Query: 136 FS--------------------------GSIPATWSQLSNLKHLDLS 156
           F+                           + P+    +  +  L+++
Sbjct: 555 FACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP-VLSLNIT 600

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 24/89 (26%), Positives = 41/89 (46%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           N+  L L  N      + + T+   L SL++  N +S   P+    +  L+ LNL +N+ 
Sbjct: 26  NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIP 165
           S     T++  +NL  L L SN++     
Sbjct: 86  SQLSDKTFAFCTNLTELHLMSNSIQKIKN 114

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 1/94 (1%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            + SL +G N  S        KL  L  L LQ N+LS          T+L  L+L +N  
Sbjct: 50  QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
                  + +  NL  LDLS N L+    +    
Sbjct: 110 QKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQV 142

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 18/113 (15%), Positives = 36/113 (31%), Gaps = 5/113 (4%)

Query: 75  NGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANN 134
             N ++  L  +   G     +  L  L  L L+ N       +    +  L+ ++L  N
Sbjct: 512 QHNNLA-RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN 570

Query: 135 KFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVAT----FNFTGTHLIC 183
             +    + ++   +LK L+L  N +T                 +       C
Sbjct: 571 NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 76.6 bits (189), Expect = 3e-15
 Identities = 22/86 (25%), Positives = 34/86 (39%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
            L L  N  S     +      L  L L  N +     +      +L +L+L++N  S +
Sbjct: 77  VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136

Query: 140 IPATWSQLSNLKHLDLSSNNLTGRIP 165
              T  QL NL+ L LS+N +     
Sbjct: 137 KLGTQVQLENLQELLLSNNKIQALKS 162

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 1/84 (1%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLP-DFLGSMTHLQSLNLANNKFSG 138
            L L  N  S   S + + L  L  L+L  N++   L       + ++  + L+ NK+  
Sbjct: 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444

Query: 139 SIPATWSQLSNLKHLDLSSNNLTG 162
               +++ + +L+ L L    L  
Sbjct: 445 LTRNSFALVPSLQRLMLRRVALKN 468

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 2/104 (1%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSG--TLPDFLGSMTHLQSLNLANN 134
           N+  + L  N +      S   +  L  L L+   L    + P     + +L  L+L+NN
Sbjct: 431 NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490

Query: 135 KFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTG 178
             +         L  L+ LDL  NNL             +   G
Sbjct: 491 NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 534

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 2/91 (2%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           N+  L L SN      +    K K L +L+L  N LS T       + +LQ L L+NNK 
Sbjct: 98  NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157

Query: 137 SGSIPA--TWSQLSNLKHLDLSSNNLTGRIP 165
                        S+LK L+LSSN +    P
Sbjct: 158 QALKSEELDIFANSSLKKLELSSNQIKEFSP 188

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPD---FLG-SMTHLQSLNLA 132
            +  L +  N   G  S   T L  L  L L ++  S        F+  + + L  LNL 
Sbjct: 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389

Query: 133 NNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
            NK S      +S L +L+ LDL  N +   +  Q + 
Sbjct: 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.3 bits (178), Expect = 5e-14
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 2/96 (2%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSM--THLQSLNLANN 134
           N+I+L L  NG S     +  +L+ L  L L +N +     + L     + L+ L L++N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 135 KFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           +     P  +  +  L  L L++  L   +  +L  
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL 217

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.0 bits (172), Expect = 4e-13
 Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 3/111 (2%)

Query: 73  CRNGNVISLTLGSNGFSGKISPSITKLKF--LASLELQDNDLSGTLPDFLGSMTHLQSLN 130
             N ++ +L+L ++  S   + +   LK+  L  L+L  N+L+    D    +  L+   
Sbjct: 219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278

Query: 131 LANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPM-QLFSVATFNFTGTH 180
           L  N        +   L N+++L+L  +     I +  L  +  F+F    
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 69.3 bits (170), Expect = 5e-13
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 5/97 (5%)

Query: 77  NVISLTLGSNGFSGKISPSIT----KLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLA 132
           N+  L+L ++  S +   + T        L  L L  N +S    D    + HL+ L+L 
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413

Query: 133 NNKFSGSIPA-TWSQLSNLKHLDLSSNNLTGRIPMQL 168
            N+    +    W  L N+  + LS N          
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 8/117 (6%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           ++  L L SNGF          L  L  ++L  N+L+        +   L+SLNL  N  
Sbjct: 537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596

Query: 137 SGSIPAT-WSQLSNLKHLDLSSNNLTGRIPMQLF-------SVATFNFTGTHLICGS 185
           +            NL  LD+  N          +       +        +H +C +
Sbjct: 597 TSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNT 653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 73  CRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLG---SMTHLQSL 129
             N ++  L L SN            +  L  L L +  L  +L + L    + T +++L
Sbjct: 168 FANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227

Query: 130 NLANNKFSGSIPATWSQL--SNLKHLDLSSNNLTGRIP 165
           +L+N++ S +   T+  L  +NL  LDLS NNL     
Sbjct: 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 4/91 (4%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
                    + ++   +     +  L L  N L           + L SL++  N  S  
Sbjct: 8   VADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL 64

Query: 140 IPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
            P    +L  LK L+L  N L+  +  + F+
Sbjct: 65  EPELCQKLPMLKVLNLQHNELSQ-LSDKTFA 94

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 10/104 (9%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTL---------PDFLGSMTHLQ 127
            +    L  N      S S+  L  +  L L+ +    ++               +  L+
Sbjct: 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332

Query: 128 SLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGR-IPMQLFS 170
            LN+ +N   G     ++ L NLK+L LS++  + R +  + F 
Sbjct: 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFV 376

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 4/95 (4%)

Query: 75  NGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANN 134
             +    ++           S   LK L  L ++DND+ G   +    + +L+ L+L+N+
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363

Query: 135 KFSGS--IPATWSQL--SNLKHLDLSSNNLTGRIP 165
             S       T+  L  S L  L+L+ N ++    
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 78.9 bits (195), Expect = 4e-16
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 9/106 (8%)

Query: 73  CRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSG-------TLPDFLGSMTH 125
            +  NV S+ L +N  S       +    L+S+ L  N L+           +   +   
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489

Query: 126 LQSLNLANNKFSGSIPA-TWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           L S++L  NK +        + L  L  +DLS N+ +   P Q  +
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN 534

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 78.9 bits (195), Expect = 4e-16
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 3/87 (3%)

Query: 80  SLTLGSNGF-SGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSG 138
            + +G N   +  +  S+ K+K L  LE   N L G LP F GS   L SLNLA N+ + 
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF-GSEIKLASLNLAYNQITE 367

Query: 139 SIPATWSQLSNLKHLDLSSNNLTGRIP 165
                      +++L  + N L   IP
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKY-IP 393

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 25/141 (17%), Positives = 44/141 (31%), Gaps = 17/141 (12%)

Query: 36  EGEALIEVLKALNDTHGQFTDWND------HFVSPCFSWSH---VTC-RNGNVISLTLGS 85
           +  AL E+  ALN  +     +        +F      W     V+   NG V  L+L  
Sbjct: 31  DYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEG 90

Query: 86  NGFSGKISPSITKLKFLASLELQDNDLSG----TLPDFLGSMTHLQSLNLANNKFSGSIP 141
            G SG++  +I +L  L  L L  +          P  + +    +        +  +  
Sbjct: 91  FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFV 150

Query: 142 ATWSQLSNLKHLDLSSNNLTG 162
                       DL  + +  
Sbjct: 151 ---DYDPREDFSDLIKDCINS 168

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 9/99 (9%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF--- 136
           +                  LK L  +E+ +      LP FL ++  +Q +N+A N+    
Sbjct: 229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG 288

Query: 137 -----SGSIPATWSQLSNLKHLDLSSNNL-TGRIPMQLF 169
                     A       ++ + +  NNL T  +   L 
Sbjct: 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ 327

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 11/98 (11%), Positives = 32/98 (32%), Gaps = 9/98 (9%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDL--------SGTLPDFLGSMTHLQS 128
           ++  + + +     K+   +  L  +  + +  N                       +Q 
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 129 LNLANNKF-SGSIPATWSQLSNLKHLDLSSNNLTGRIP 165
           + +  N   +  +  +  ++  L  L+   N L G++P
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.5 bits (186), Expect = 5e-15
 Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 15/100 (15%)

Query: 80  SLTLGSNGFSG-------KISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLA 132
           ++    N            + P+  K   ++S+ L +N +S    +   + + L S+NL 
Sbjct: 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM 465

Query: 133 NNKFSG-------SIPATWSQLSNLKHLDLSSNNLTGRIP 165
            N  +             +     L  +DL  N LT  + 
Sbjct: 466 GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LS 504

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.1 bits (185), Expect = 8e-15
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 9/110 (8%)

Query: 77  NVISLTLGSNGFSG-KISPSITKLKFLASLELQDNDLSG-------TLPDFLGSMTHLQS 128
            V +L+   N             +  +++++   N++          L        ++ S
Sbjct: 378 QVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437

Query: 129 LNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTG 178
           +NL+NN+ S      +S  S L  ++L  N LT  IP         NF  
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKN 486

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 11/102 (10%)

Query: 77  NVISLTLGSNGFSGKISPSI--TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSL----- 129
            + S+ L  N  +  +S     T L +L  ++L  N  S   P    + + L+       
Sbjct: 489 LLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546

Query: 130 -NLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
            +   N+     P   +   +L  L + SN++   +  ++  
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKITP 587

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 14/113 (12%), Positives = 37/113 (32%), Gaps = 20/113 (17%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           ++I   + S+     I  S         +    N+++  +   +  +T L+   + N+ F
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPF 218

Query: 137 SG-------------------SIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
                                +    W  L +L  +++ +     ++P  L +
Sbjct: 219 VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 8/83 (9%), Positives = 25/83 (30%), Gaps = 5/83 (6%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
              +G++ F  +      +         +      T      ++  L  + + N      
Sbjct: 210 QFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264

Query: 140 IPATWSQLSNLKHLDLSSNNLTG 162
           +P     L  ++ ++++ N    
Sbjct: 265 LPTFLKALPEMQLINVACNRGIS 287

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.2 bits (180), Expect = 3e-14
 Identities = 14/100 (14%), Positives = 28/100 (28%), Gaps = 10/100 (10%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQD------NDLSGTLPDFLGSMTHLQSLN 130
            ++ + L  N FS            L    +++      N      P+ +     L  L 
Sbjct: 514 YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572

Query: 131 LANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           + +N     +        N+  LD+  N         +  
Sbjct: 573 IGSNDIR-KVNEKI--TPNISVLDIKDNPNISIDLSYVCP 609

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.9 bits (169), Expect = 6e-13
 Identities = 5/99 (5%), Positives = 24/99 (24%), Gaps = 3/99 (3%)

Query: 80  SLTLGSNGFSGKISPSITKLKF--LASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFS 137
                   +         +  F  L    +  +    ++            +   +N  +
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 138 GSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNF 176
             +     +L+ L+   + ++        + +      +
Sbjct: 197 -FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY 234

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 6/84 (7%)

Query: 88  FSGKISPSITKLKFLASLELQDNDLSGTLPD-FLGSMTHLQSLNLANNKFSGSIPATWSQ 146
             G  +       F   L     D+ G  P   L S   +  L+L     SG +P    Q
Sbjct: 49  QQGFGTQPGANWNFNKEL-----DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQ 103

Query: 147 LSNLKHLDLSSNNLTGRIPMQLFS 170
           L+ L+ L L S+       +    
Sbjct: 104 LTELEVLALGSHGEKVNERLFGPK 127

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 10/81 (12%), Positives = 23/81 (28%), Gaps = 3/81 (3%)

Query: 81  LTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSI 140
                N    +    IT    L  L++  ND+   + +      ++  L++ +N      
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNE--KITPNISVLDIKDNPNISID 603

Query: 141 PATWSQLSNLKHLDLSSNNLT 161
            +            L  +   
Sbjct: 604 LSYVCPYIEAGMYMLFYDKTQ 624

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 78.8 bits (194), Expect = 5e-16
 Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 10/95 (10%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSG- 138
                          S + LK L  +EL +      LPDFL  +  LQSLN+A N+    
Sbjct: 471 DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA 530

Query: 139 --------SIPATWSQLSNLKHLDLSSNNLTGRIP 165
                    +         ++   +  NNL    P
Sbjct: 531 AQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FP 564

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 72.6 bits (178), Expect = 5e-14
 Identities = 17/99 (17%), Positives = 41/99 (41%), Gaps = 11/99 (11%)

Query: 80  SLTLGSNGFSGKISPSI--TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNL------ 131
           ++ L  N  +  +S     T L +L+++++  N  S + P    + + L++  +      
Sbjct: 732 TIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDA 789

Query: 132 ANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
             N+     P   +   +L  L + SN++   +  +L  
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKLTP 827

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.8 bits (176), Expect = 1e-13
 Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 12/96 (12%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSG---------TLPDFLGSMTHLQ 127
           ++  + L +     ++   +  L  L SL +  N              L D   +   +Q
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551

Query: 128 SLNLANNKFSGSIPATW--SQLSNLKHLDLSSNNLT 161
              +  N      PA+    ++  L  LD   N + 
Sbjct: 552 IFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR 586

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.5 bits (170), Expect = 6e-13
 Identities = 17/97 (17%), Positives = 29/97 (29%), Gaps = 6/97 (6%)

Query: 76  GNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPD--FLGSMTHLQSLNLAN 133
            N             +++        +    +  N+L    P    L  M  L  L+  +
Sbjct: 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVH 582

Query: 134 NKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           NK    + A +     L  L L  N +   IP    +
Sbjct: 583 NKVR-HLEA-FGTNVKLTDLKLDYNQIEE-IPEDFCA 616

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.1 bits (169), Expect = 7e-13
 Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 7/108 (6%)

Query: 77  NVISLTLGSNGFSG-KISPSITKLKFLASLELQDNDLSGTLPDFLGSM-----THLQSLN 130
            V  L    N         +   +  + S++   N +     +   SM      +  ++ 
Sbjct: 620 QVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679

Query: 131 LANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTG 178
           L+ N+        ++  S +  + LS+N +T  IP         N+  
Sbjct: 680 LSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKN 726

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.7 bits (168), Expect = 9e-13
 Identities = 14/102 (13%), Positives = 31/102 (30%), Gaps = 20/102 (19%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSG-------------------TLPDFL 120
            +   +N  +  IS +I +L  L  +   ++  +                          
Sbjct: 429 QIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487

Query: 121 GSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTG 162
            ++  L  + L N      +P     L  L+ L+++ N    
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.4 bits (167), Expect = 1e-12
 Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 4/91 (4%)

Query: 80  SLTLGSNGFSG-KISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSG 138
              +G N       S S+ K+  L  L+   N +   L  F G+   L  L L  N+   
Sbjct: 552 IFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAF-GTNVKLTDLKLDYNQIEE 609

Query: 139 SIPATWSQLSNLKHLDLSSNNLTGRIPMQLF 169
                 +    ++ L  S N L   IP    
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKY-IPNIFN 639

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.0 bits (166), Expect = 2e-12
 Identities = 17/120 (14%), Positives = 33/120 (27%), Gaps = 15/120 (12%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQ------DNDLSGTLPDFLGSMTHLQSLNLAN 133
           ++ +  N FS            L +  ++       N +    P  + +   L  L + +
Sbjct: 757 NMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815

Query: 134 NKFSGSIPATWSQLSNLKHLDLSSNNLT-----GRIPMQLFSVATFNFTGTHLICGSSLE 188
           N     +         L  LD++ N           P     +    +  T  I G    
Sbjct: 816 NDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDAL 872

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.1 bits (161), Expect = 6e-12
 Identities = 25/175 (14%), Positives = 57/175 (32%), Gaps = 16/175 (9%)

Query: 36  EGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWSHVT--CRNGNVISLTLGSNGFSGKIS 93
           + +AL  + +AL+  + ++     +      +W+        G+   + L +NG      
Sbjct: 270 DYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGR----- 324

Query: 94  PSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHL 153
                   +  L L      G +PD +G +T L+ L+   +  + S      +       
Sbjct: 325 --------VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMS 376

Query: 154 DLSSNNLTGRIPMQLFSVATFNFTGTHLICGSSLEQPCMSRPSPPVSTSRTKLRI 208
           +   + +      ++F         + L+  +    P M         S    +I
Sbjct: 377 EERKHRIRMHYK-KMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQI 430

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.1 bits (161), Expect = 7e-12
 Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 13/102 (12%)

Query: 80  SLTLGSNGFSGK-----ISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANN 134
           S+    N    +      S    K    +++ L  N++     +   + + + ++ L+NN
Sbjct: 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707

Query: 135 KFS-------GSIPATWSQLSNLKHLDLSSNNLTGRIPMQLF 169
             +             +     L  +DL  N LT  +     
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFR 748

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.1 bits (156), Expect = 3e-11
 Identities = 19/104 (18%), Positives = 42/104 (40%), Gaps = 17/104 (16%)

Query: 77  NVISLTLGSNGFS-------GKISPSITKLKFLASLELQDNDLSGTLPD--FLGSMTHLQ 127
            + ++ L +N  +            +      L +++L+ N L+ +L D     ++ +L 
Sbjct: 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLS 756

Query: 128 SLNLANNKFSGSIPATWSQLSNLKHLDL------SSNNLTGRIP 165
           +++++ N FS S P      S LK   +        N +  + P
Sbjct: 757 NMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 1/98 (1%)

Query: 73  CRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLA 132
               +V S+ L  + F    S +      L  L+L    LS  LP  L  ++ L+ L L+
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLS 309

Query: 133 NNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
            NKF      + S   +L HL +  N     +      
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 1/94 (1%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           +   L    N      + + ++L  L  L+L    +     D   S   L +L L  N  
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
                   S    LKHL      ++  I      
Sbjct: 94  IFMAETALSGPKALKHLFFIQTGISS-IDFIPLH 126

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 1/87 (1%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPD-FLGSMTHLQSLNLANNKFSG 138
           SL L  N      + +  +   L  L+L    L          ++  L+ LNL+++    
Sbjct: 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439

Query: 139 SIPATWSQLSNLKHLDLSSNNLTGRIP 165
           S    +  L  L+HL+L  N+      
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNI 466

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 69.7 bits (171), Expect = 4e-13
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 3/97 (3%)

Query: 77  NVISLTLGSNGFSGKISP-SITKLKFLASLELQDNDL--SGTLPDFLGSMTHLQSLNLAN 133
           ++  L++  N    ++    +  L+ L  L+L  +D+  S      L +++HLQSLNL+ 
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 134 NKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           N+        + +   L+ LDL+   L  +     F 
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 69.7 bits (171), Expect = 4e-13
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 1/94 (1%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            + +L L +N        +++  K L  L      +S      L +   L+SL L +N  
Sbjct: 82  RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           S            LK LD  +N +   +  +  S
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMS 174

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 4/97 (4%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGT---LPDFLGSMTHLQSLNLAN 133
            +  L L  +            L  L  L LQ N          + L ++  L+ L L+ 
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485

Query: 134 NKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
              S      ++ L  + H+DLS N LT    ++  S
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTS-SSIEALS 521

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 17/91 (18%), Positives = 25/91 (27%), Gaps = 1/91 (1%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
            L L           +      L +L L  N L       L     L+ L       S  
Sbjct: 61  FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI 120

Query: 140 IPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
                     L+ L L SN+++  I +    
Sbjct: 121 DFIPLHNQKTLESLYLGSNHISS-IKLPKGF 150

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 24/95 (25%), Positives = 33/95 (34%), Gaps = 5/95 (5%)

Query: 80  SLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSG 138
            L L       K + S    L  L  L L  + L  +       +  LQ LNL  N F  
Sbjct: 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463

Query: 139 SI---PATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
                  +   L  L+ L LS  +L+  I    F+
Sbjct: 464 GNIQKTNSLQTLGRLEILVLSFCDLSS-IDQHAFT 497

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLE---LQDNDLSGTLPDFLGSMTHLQSLNLAN 133
            +  L L  N F          L+ L  LE   L   DLS        S+  +  ++L++
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509

Query: 134 NKFSGSIPATWSQLSNLKHLDLSSNNLTGRIP---MQLFSVATFNFTGTHLICGSSLE 188
           N+ + S     S L  + +L+L+SN+++  +P     L    T N     L C  S  
Sbjct: 510 NRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 24/100 (24%), Positives = 34/100 (34%), Gaps = 3/100 (3%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            +  L     G S      +   K L SL L  N +S            L+ L+  NN  
Sbjct: 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165

Query: 137 SGSIPATWSQLSNLKH--LDLSSNNLTGRIPMQLFSVATF 174
                   S L    +  L+L+ N++ G I    F  A F
Sbjct: 166 HYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVF 204

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 1/93 (1%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            +  L L     S     + T LK +  ++L  N L+ +  + L  +  +  LNLA+N  
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHI 535

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLF 169
           S  +P+    LS  + ++L  N L        F
Sbjct: 536 SIILPSLLPILSQQRTINLRQNPLDCTCSNIYF 568

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 16/101 (15%), Positives = 29/101 (28%), Gaps = 6/101 (5%)

Query: 74  RNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLG--SMTHLQSLNL 131
           +    +SL L  N     I P         SL          +   L   ++  L     
Sbjct: 177 QQATNLSLNLNGN-DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTF 235

Query: 132 ANNKFSGSIPATWSQLS--NLKHLDLSSNNLTGRIPMQLFS 170
            +       PA +  L   +++ ++L  +     I    F 
Sbjct: 236 EDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFH 275

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 21/105 (20%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            +  + L  N  +     +++ LK +  L L  N +S  LP  L  ++  +++NL  N  
Sbjct: 501 MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559

Query: 137 SGSIPATW--------------------SQLSNLKHLDLSSNNLT 161
             +    +                         L+ + LS   L+
Sbjct: 560 DCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 104 SLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGR 163
           +   ++  L+  +P  L +    + L  + N        T+S+L NL  LDL+   +   
Sbjct: 16  TYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW- 71

Query: 164 IPMQLFS 170
           I    F 
Sbjct: 72  IHEDTFQ 78

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 3/88 (3%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLS-GTLPDFLGSMTHLQSLNLANNK 135
            +  L   +N         ++ L+   +L L  N      +          QSLN    +
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213

Query: 136 FSGSIPA--TWSQLSNLKHLDLSSNNLT 161
               I      S + +L        +  
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDE 241

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 72.0 bits (177), Expect = 2e-14
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 277 NIIGQGGFGKVYKGVLSDNTKVAVKRL-QDYYSPGGEAAFQREVHLISVAIHKNLLQLIG 335
             IG G FG V++      + VAVK L +  +       F REV ++    H N++  +G
Sbjct: 43  EKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMG 101

Query: 336 YCTTSSERILVYPFMQNLSVAYRLRVSH 363
             T      +V  ++   S+   L  S 
Sbjct: 102 AVTQPPNLSIVTEYLSRGSLYRLLHKSG 129

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.8 bits (179), Expect = 4e-14
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 6/113 (5%)

Query: 81  LTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
           L +  N F      ++      L  L+L    L         ++  LQ LN+++N     
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512

Query: 140 IPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVAT----FNFTGTHLICGSSLE 188
             + ++QL +L  LD S N +       L         FN T   + C    +
Sbjct: 513 DSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACICEHQ 564

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.6 bits (176), Expect = 8e-14
 Identities = 20/91 (21%), Positives = 32/91 (35%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
            L L           +   L  L++L L  N +    P     +T L++L     K +  
Sbjct: 60  WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL 119

Query: 140 IPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
                 QL  LK L+++ N +        FS
Sbjct: 120 ESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 1/94 (1%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           +  ++ L  N      S S +    L  L+L   ++          + HL +L L  N  
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
               P ++S L++L++L      L   +      
Sbjct: 93  QSFSPGSFSGLTSLENLVAVETKLAS-LESFPIG 125

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.7 bits (171), Expect = 4e-13
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           ++ +L L  N        S + L  L +L   +  L+      +G +  L+ LN+A+N  
Sbjct: 81  HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 140

Query: 137 SG-SIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
               +PA +S L+NL H+DLS N +   I +    
Sbjct: 141 HSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQ 174

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 2/95 (2%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLP-DFLGSMTHLQSLNLANNK 135
           ++  L L  NG    +S +   L+ L  L+ Q + L          S+  L  L+++   
Sbjct: 377 SLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435

Query: 136 FSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
                   +  L++L  L ++ N+        +F+
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 15/85 (17%), Positives = 29/85 (34%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           N+  L L               L  L  L +  N+L          +  L +L+ + N+ 
Sbjct: 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLT 161
             S         +L   +L++N++ 
Sbjct: 534 ETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.4 bits (152), Expect = 8e-11
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 6/99 (6%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSG-TLPDFLGSMTHLQSLNLANNK 135
           ++ +L       +   S  I +L  L  L +  N +    LP +  ++T+L  ++L+ N 
Sbjct: 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164

Query: 136 FSGSIPATWSQLSNLK----HLDLSSNNLTGRIPMQLFS 170
                      L         LD+S N +   I  Q F 
Sbjct: 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQ 202

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
           SL++               L FL SL L  N  S +      ++  L  L+L+ N  S S
Sbjct: 311 SLSIIRCQLK---QFPTLDLPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFS 365

Query: 140 IPATWSQL--SNLKHLDLSSNNLT 161
              ++S L  ++L+HLDLS N   
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGAI 389

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 8/94 (8%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           NV +++L            + K     SL +    L       L     L+SL L  NK 
Sbjct: 286 NVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDL---PFLKSLTLTMNK- 339

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
            GSI      L +L +LDLS N L+       +S
Sbjct: 340 -GSISFKKVALPSLSYLDLSRNALSF-SGCCSYS 371

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 9/91 (9%)

Query: 80  SLTLGSNGFSGKISP-SITKLKFLASLELQDNDLSGTL------PDFLGSMTHLQ--SLN 130
            LTL  N  S  I    +  L  L    L   +           P  +  +  +      
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267

Query: 131 LANNKFSGSIPATWSQLSNLKHLDLSSNNLT 161
           L            +  L+N+  + L+  ++ 
Sbjct: 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSIK 298

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 90  GKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSN 149
           G ++P I  +  + + +  D  LS  +PD + S    ++++L+ N        ++S  S 
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSE 57

Query: 150 LKHLDLSSNNLTGRIPMQLFS 170
           L+ LDLS   +   I  + + 
Sbjct: 58  LQWLDLSRCEIET-IEDKAWH 77

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 7/78 (8%), Positives = 21/78 (26%), Gaps = 2/78 (2%)

Query: 104 SLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGR 163
              L   +           + ++ +++LA       +     +    + L +    L   
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLED-VPKHFKWQSLSIIRCQLKQF 322

Query: 164 IPMQLFSVATFNFTGTHL 181
             + L  + +   T    
Sbjct: 323 PTLDLPFLKSLTLTMNKG 340

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 71.1 bits (175), Expect = 4e-14
 Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 277 NIIGQGGFGKVYKGVLSDN----TKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQ 332
            +IG+G FG VY G L DN       AVK L      G  + F  E  ++    H N+L 
Sbjct: 31  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 90

Query: 333 LIGYCTTSSERIL-VYPFMQN 352
           L+G C  S    L V P+M++
Sbjct: 91  LLGICLRSEGSPLVVLPYMKH 111

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 70.8 bits (174), Expect = 5e-14
 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 275 ESNIIGQGGFGKVYKGVLSD----NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNL 330
              +IG+G FG VY G   D      + A+K L          AF RE  L+    H N+
Sbjct: 25  SDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNV 84

Query: 331 LQLIGYCTTSSERIL-VYPFMQN 352
           L LIG           + P+M +
Sbjct: 85  LALIGIMLPPEGLPHVLLPYMCH 107

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 71.2 bits (175), Expect = 5e-14
 Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 3/89 (3%)

Query: 277 NIIGQGGFGKVYKGVLSDNTKVAVKRL-QDYYSPGGEAAFQREVHLISVAIHKNLLQLIG 335
            +IG+G FG+VY G    + +VA++ +  +  +     AF+REV       H+N++  +G
Sbjct: 39  ELIGKGRFGQVYHGRW--HGEVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMG 96

Query: 336 YCTTSSERILVYPFMQNLSVAYRLRVSHK 364
            C +     ++    +  ++   +R +  
Sbjct: 97  ACMSPPHLAIITSLCKGRTLYSVVRDAKI 125

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 70.3 bits (173), Expect = 6e-14
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 277 NIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGY 336
             IG G FG V+ G   +  KVA+K +++      E  F  E  ++    H  L+QL G 
Sbjct: 14  QEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS--EEDFIEEAEVMMKLSHPKLVQLYGV 71

Query: 337 CTTSSERILVYPFMQN 352
           C   +   LV  FM++
Sbjct: 72  CLEQAPICLVTEFMEH 87

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 277 NIIGQGGFGKVYKGVLSDN---TKVAVKRLQDYYSPGGEAAFQREVHLIS-VAIHKNLLQ 332
           ++IG+G FG+V K  +  +      A+KR+++Y S      F  E+ ++  +  H N++ 
Sbjct: 31  DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 90

Query: 333 LIGYCTTSSERILVYPFMQN 352
           L+G C       L   +  +
Sbjct: 91  LLGACEHRGYLYLAIEYAPH 110

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 70.6 bits (173), Expect = 1e-13
 Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 277 NIIGQGGFGKVYKGVLSDN----TKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQ 332
            +IG+G FG VY G L DN       AVK L      G  + F  E  ++    H N+L 
Sbjct: 95  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 154

Query: 333 LIGYCTTSSERIL-VYPFMQN 352
           L+G C  S    L V P+M++
Sbjct: 155 LLGICLRSEGSPLVVLPYMKH 175

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 4/87 (4%)

Query: 277 NIIGQGGFGKVYKGVLSDNTKVAVKRL---QDYYSPGGEAAFQREVHLISVAIHKNLLQL 333
            IIG GGFGKVY+       +VAVK      D          ++E  L ++  H N++ L
Sbjct: 13  EIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIAL 71

Query: 334 IGYCTTSSERILVYPFMQNLSVAYRLR 360
            G C       LV  F +   +   L 
Sbjct: 72  RGVCLKEPNLCLVMEFARGGPLNRVLS 98

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 247 GEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVL-----SDNTKVAVK 301
           GE   +  L  L+     E +          ++G G FG VYKG+           VA+K
Sbjct: 1   GEAPNQALLRILKE---TEFKK-------IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIK 50

Query: 302 RLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQN 352
            L++  SP        E ++++   + ++ +L+G C TS+ ++ +   M  
Sbjct: 51  ELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQL-ITQLMPF 100

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 277 NIIGQGGFGKVYKGVLSD------NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNL 330
             +G G FG+VY+G +S         +VAVK L +  S   E  F  E  +IS   H+N+
Sbjct: 36  RGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNI 95

Query: 331 LQLIGYCTTSSERILVYPFMQN 352
           ++ IG    S  R ++   M  
Sbjct: 96  VRCIGVSLQSLPRFILMELMAG 117

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 68.8 bits (169), Expect = 3e-13
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 277 NIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGY 336
             +G G FG V  G       VA+K +++      E  F  E  ++    H+ L+QL G 
Sbjct: 30  KELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS--EDEFIEEAKVMMNLSHEKLVQLYGV 87

Query: 337 CTTSSERILVYPFMQN 352
           CT      ++  +M N
Sbjct: 88  CTKQRPIFIITEYMAN 103

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 68.9 bits (169), Expect = 3e-13
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 277 NIIGQGGFGKVYKGVLSD------NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNL 330
             +GQG FG VY+GV          T+VA+K + +  S      F  E  ++      ++
Sbjct: 31  RELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHV 90

Query: 331 LQLIGYCTTSSERILVYPFMQN 352
           ++L+G  +     +++   M  
Sbjct: 91  VRLLGVVSQGQPTLVIMELMTR 112

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 68.5 bits (168), Expect = 3e-13
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 277 NIIGQGGFGKVYKGVL-----SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLL 331
             +G+G FGKV          +   +VAVK L+        A  ++E+ ++    H+N++
Sbjct: 27  RDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIV 86

Query: 332 QLIGYCTTSSER--ILVYPFMQN 352
           +  G CT        L+  F+ +
Sbjct: 87  KYKGICTEDGGNGIKLIMEFLPS 109

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 277 NIIGQGGFGKVYKGVLSD------NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNL 330
             IG+G FG+V++            T VAVK L++  S   +A FQRE  L++   + N+
Sbjct: 53  RDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNI 112

Query: 331 LQLIGYCTTSSERILVYPFMQN 352
           ++L+G C       L++ +M  
Sbjct: 113 VKLLGVCAVGKPMCLLFEYMAY 134

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 69.0 bits (169), Expect = 3e-13
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 277 NIIGQGGFGKVYKGVLSD------NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNL 330
             +G G FG+VY+G +S         +VAVK L +  S   E  F  E  +IS   H+N+
Sbjct: 77  RGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNI 136

Query: 331 LQLIGYCTTSSERILVYPFMQN 352
           ++ IG    S  R ++   M  
Sbjct: 137 VRCIGVSLQSLPRFILLELMAG 158

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 68.0 bits (167), Expect = 4e-13
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 278 IIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYC 337
            +G G FG V  G       VAVK +++      E  F +E   +    H  L++  G C
Sbjct: 15  ELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMS--EDEFFQEAQTMMKLSHPKLVKFYGVC 72

Query: 338 TTSSERILVYPFMQN 352
           +      +V  ++ N
Sbjct: 73  SKEYPIYIVTEYISN 87

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.4 bits (168), Expect = 4e-13
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 73  CRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLA 132
                 ++L L S     +      +L  L  + +    L   LPD +     L++L LA
Sbjct: 78  ATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLA 135

Query: 133 NNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIP 165
            N    ++PA+ + L+ L+ L + +      +P
Sbjct: 136 RNPLR-ALPASIASLNRLRELSIRACPELTELP 167

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 1/92 (1%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           N+ SL + ++  S  + P+I  L  L  L+L+        P   G    L+ L L +   
Sbjct: 207 NLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQL 168
             ++P    +L+ L+ LDL       R+P  +
Sbjct: 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 17/91 (18%), Positives = 30/91 (32%)

Query: 81  LTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSI 140
           L L          P       L  L L+D     TLP  +  +T L+ L+L        +
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 141 PATWSQLSNLKHLDLSSNNLTGRIPMQLFSV 171
           P+  +QL     + +  +        +  + 
Sbjct: 294 PSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.3 bits (134), Expect = 9e-09
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 11/94 (11%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGS---------MTHLQ 127
            + +LTL  N     +  SI  L  L  L ++       LP+ L S         + +LQ
Sbjct: 128 GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186

Query: 128 SLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLT 161
           SL L       S+PA+ + L NLK L + ++ L+
Sbjct: 187 SLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 68.0 bits (167), Expect = 5e-13
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 277 NIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNL 330
             +G+  FGKVYKG L           VA+K L+D         F+ E  L +   H N+
Sbjct: 15  EELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNV 74

Query: 331 LQLIGYCTTSSERILVYPFMQN 352
           + L+G  T      +++ +  +
Sbjct: 75  VCLLGVVTKDQPLSMIFSYCSH 96

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 67.3 bits (165), Expect = 7e-13
 Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 272 NFSE---SNIIGQGGFGKVYKGVLSDNTKVAVKRL-QDYYSPGGEAAFQREVHLISVAIH 327
           +F +      + +   G+++KG       + VK L    +S      F  E   + +  H
Sbjct: 8   DFKQLNFLTKLNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSH 66

Query: 328 KNLLQLIGYCTTSSERILV 346
            N+L ++G C +       
Sbjct: 67  PNVLPVLGACQSPPAPHPT 85

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.8 bits (161), Expect = 7e-13
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           N+  LT+ +   +   +P I+ L  L  L +   D++      L  +T L  L+++++  
Sbjct: 67  NIKDLTINNIHAT-NYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124

Query: 137 SGSIPATWSQLSNLKHLDLSSNNL 160
             SI    + L  +  +DLS N  
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.7 bits (153), Expect = 9e-12
 Identities = 14/85 (16%), Positives = 36/85 (42%), Gaps = 1/85 (1%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           N+  L +     +    P+++ L  L  L++  +    ++   + ++  + S++L+ N  
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLT 161
              I      L  LK L++  + + 
Sbjct: 149 ITDIMPL-KTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 8e-11
 Identities = 14/92 (15%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           ++  +TL +   +  ++  I     +  L + +   +   P  +  +++L+ L +     
Sbjct: 45  SLTYITLANINVT-DLTG-IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDV 100

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQL 168
           +       S L++L  LD+S +     I  ++
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 3/86 (3%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           ++  L +  +     I   I  L  + S++L  N     +   L ++  L+SLN+  +  
Sbjct: 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGV 171

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTG 162
                        L  L   S  + G
Sbjct: 172 HDYRGI--EDFPKLNQLYAFSQTIGG 195

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 67.6 bits (166), Expect = 8e-13
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 6/82 (7%)

Query: 277 NIIGQGGFGKVYKGVLSD------NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNL 330
             +G+G FGKV K            T VAVK L++  SP        E +++    H ++
Sbjct: 29  KTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHV 88

Query: 331 LQLIGYCTTSSERILVYPFMQN 352
           ++L G C+     +L+  + + 
Sbjct: 89  IKLYGACSQDGPLLLIVEYAKY 110

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 67.0 bits (164), Expect = 9e-13
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 7/75 (9%)

Query: 271 DNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRL------QDYYSPGGEAAFQREVHLIS 323
           +       IG+GGFG V+KG  + D + VA+K L       +         FQREV ++S
Sbjct: 19  NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMS 78

Query: 324 VAIHKNLLQLIGYCT 338
              H N+++L G   
Sbjct: 79  NLNHPNIVKLYGLMH 93

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 66.9 bits (164), Expect = 9e-13
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 279 IGQGGFGKVYKGVLSDNTKVAVKRL-QDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYC 337
           IG G FG VYKG    +  VAVK L     +P    AF+ EV ++    H N+L  +GY 
Sbjct: 32  IGSGSFGTVYKGKW--HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 89

Query: 338 T 338
           T
Sbjct: 90  T 90

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 247 GEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSD-----NTKVAVK 301
           GE   +  L  L+     E +          ++G G FG VYKG+           VA+K
Sbjct: 1   GEAPNQALLRILKE---TEFKK-------IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIK 50

Query: 302 RLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQN 352
            L++  SP        E ++++   + ++ +L+G C TS+ ++ +   M  
Sbjct: 51  ELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQL-ITQLMPF 100

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 271 DNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNL 330
                  ++G+G FG V K        VA+K+++   S     AF  E+  +S   H N+
Sbjct: 8   KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIE---SESERKAFIVELRQLSRVNHPNI 63

Query: 331 LQLIGYCT 338
           ++L G C 
Sbjct: 64  VKLYGACL 71

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 277 NIIGQGGFGKVYKGVLSD-----NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLL 331
            ++G G FG V+KGV           V +K ++D        A    +  I    H +++
Sbjct: 19  KVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIV 78

Query: 332 QLIGYCTTSSERILVYPFMQN 352
           +L+G C  SS ++ V  ++  
Sbjct: 79  RLLGLCPGSSLQL-VTQYLPL 98

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 277 NIIGQGGFGKVYKGVLSD--------NTKVAVKRLQDYYSPGGEAAFQREVHLIS-VAIH 327
             +G+G FG+V                  VAVK L+D  +    +    E+ ++  +  H
Sbjct: 41  KPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKH 100

Query: 328 KNLLQLIGYCTTSSERILVYPFMQN 352
           KN++ L+G CT      ++  +   
Sbjct: 101 KNIINLLGACTQDGPLYVIVEYASK 125

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 277 NIIGQGGFGKVYKGVLSD--------NTKVAVKRLQDYYSPGGEAAFQREVHLIS-VAIH 327
             +G+G FG+V                  VAVK L+D  +    +    E+ ++  +  H
Sbjct: 87  KPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKH 146

Query: 328 KNLLQLIGYCTTSSERILVYPFMQN 352
           KN++ L+G CT      ++  +   
Sbjct: 147 KNIINLLGACTQDGPLYVIVEYASK 171

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 4/94 (4%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            +  L L  N     +   +     L +L+L  N L+  +     S   +  ++L NNK 
Sbjct: 170 TLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
              I        NL+H DL  N          FS
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 18/94 (19%), Positives = 41/94 (43%), Gaps = 5/94 (5%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           ++ +L   +N  S ++S S    +   ++ L +N ++       G  + +Q L+L  N+ 
Sbjct: 100 SIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

Query: 137 SG-SIPATWSQLSNLKHLDLSSNNLTGRIPMQLF 169
              +     +    L+HL+L  N +   +  Q+ 
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV 189

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 81  LTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSI 140
             +  +     ++        +  L+L  N LS      L   T L+ LNL++N      
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ET 73

Query: 141 PATWSQLSNLKHLDLSSNNLT 161
                 LS L+ LDL++N + 
Sbjct: 74  LDL-ESLSTLRTLDLNNNYVQ 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 16/63 (25%), Positives = 28/63 (44%)

Query: 99  LKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSN 158
                  ++ D+ L   L     S  +++ L+L+ N  S    A  +  + L+ L+LSSN
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 159 NLT 161
            L 
Sbjct: 69  VLY 71

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           NV  L L  N  S   +  +     L  L L  N L     D   S++ L++L+L NN  
Sbjct: 35  NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLDL-ESLSTLRTLDLNNNYV 92

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
                       +++ L  ++NN++ R+      
Sbjct: 93  Q-----ELLVGPSIETLHAANNNIS-RVSCSRGQ 120

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.5 bits (142), Expect = 9e-10
 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 8/85 (9%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            + +L L +N         +     + +L   +N++S  +          +++ LANNK 
Sbjct: 81  TLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVS--CSRGQGKKNIYLANNKI 132

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLT 161
           +          S +++LDL  N + 
Sbjct: 133 TMLRDLDEGCRSRVQYLDLKLNEID 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            + +L L SN  +  + P       +  + L++N L   +   L    +L+  +L  N F
Sbjct: 192 KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249

Query: 137 S-GSIPATWSQLSNLKHLDLSSNN 159
             G++   +S+   ++ +   +  
Sbjct: 250 HCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.2 bits (118), Expect = 9e-07
 Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 116 LPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           + +   +    +   + ++    ++ +      N+K LDLS N L+ +I     +
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLA 55

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 65.8 bits (161), Expect = 3e-12
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 277 NIIGQGGFGKVYKGVLSD----NTKVAVKRL-QDYYSPGGEAAFQREVHLISVAIHKNLL 331
            I+G+G FG V +G L      + KVAVK +  D  S      F  E   +    H N++
Sbjct: 40  KILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVI 99

Query: 332 QLIGYCT-----TSSERILVYPFMQN 352
           +L+G C         + +++ PFM+ 
Sbjct: 100 RLLGVCIEMSSQGIPKPMVILPFMKY 125

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 65.8 bits (161), Expect = 3e-12
 Identities = 15/85 (17%), Positives = 38/85 (44%), Gaps = 2/85 (2%)

Query: 277 NIIGQGGFGKVYKGVLSDNTK-VAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIG 335
            ++G+G FG+  K    +  + + +K L   +    +  F +EV ++    H N+L+ IG
Sbjct: 16  EVLGKGCFGQAIKVTHRETGEVMVMKELIR-FDEETQRTFLKEVKVMRCLEHPNVLKFIG 74

Query: 336 YCTTSSERILVYPFMQNLSVAYRLR 360
                     +  +++  ++   ++
Sbjct: 75  VLYKDKRLNFITEYIKGGTLRGIIK 99

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 65.3 bits (160), Expect = 3e-12
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 278 IIGQGGFGKVYKGVL----SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQL 333
           I+G+G FG+VY+GV      +   VAVK  +   +   +  F  E  ++    H ++++L
Sbjct: 19  ILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKL 78

Query: 334 IGYCTTSSERILVYPFMQN 352
           IG        I +      
Sbjct: 79  IGIIEEEPTWI-IMELYPY 96

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 65.8 bits (161), Expect = 3e-12
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 7/83 (8%)

Query: 277 NIIGQGGFGKVYKGVLSD------NTKVAVKRLQDYYSPGGEAAFQREVHLIS-VAIHKN 329
            ++G G FGKV             + +VAVK L++        A   E+ +++ +  H+N
Sbjct: 51  KVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHEN 110

Query: 330 LLQLIGYCTTSSERILVYPFMQN 352
           ++ L+G CT S    L++ +   
Sbjct: 111 IVNLLGACTLSGPIYLIFEYCCY 133

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.4 bits (162), Expect = 4e-12
 Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 4/94 (4%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            +  L L  N     +   +     L +L+L  N L+  +     S   +  ++L NNK 
Sbjct: 170 TLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
              I        NL+H DL  N          FS
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 63.3 bits (154), Expect = 4e-11
 Identities = 18/94 (19%), Positives = 41/94 (43%), Gaps = 5/94 (5%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           ++ +L   +N  S ++S S    +   ++ L +N ++       G  + +Q L+L  N+ 
Sbjct: 100 SIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

Query: 137 SG-SIPATWSQLSNLKHLDLSSNNLTGRIPMQLF 169
              +     +    L+HL+L  N +   +  Q+ 
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV 189

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.2 bits (151), Expect = 9e-11
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 81  LTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSI 140
             +  +     ++        +  L+L  N LS      L   T L+ LNL++N      
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ET 73

Query: 141 PATWSQLSNLKHLDLSSNNLT 161
                 LS L+ LDL++N + 
Sbjct: 74  LD-LESLSTLRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.9 bits (145), Expect = 4e-10
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 92  ISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLK 151
           I  +  + K     ++ D+ L   L     S  +++ L+L+ N  S    A  +  + L+
Sbjct: 5   IKQNGNRYKIE---KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 152 HLDLSSNNLTG 162
            L+LSSN L  
Sbjct: 62  LLNLSSNVLYE 72

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.5 bits (144), Expect = 7e-10
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           NV  L L  N  S   +  +     L  L L  N L     D   S++ L++L+L NN  
Sbjct: 35  NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLDL-ESLSTLRTLDLNNNYV 92

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
                       +++ L  ++NN++ R+      
Sbjct: 93  Q-----ELLVGPSIETLHAANNNIS-RVSCSRGQ 120

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 8/85 (9%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            + +L L +N         +     + +L   +N++S  +          +++ LANNK 
Sbjct: 81  TLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVS--CSRGQGKKNIYLANNKI 132

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLT 161
           +          S +++LDL  N + 
Sbjct: 133 TMLRDLDEGCRSRVQYLDLKLNEID 157

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFS-G 138
           +L L SN  +  + P       +  + L++N L   +   L    +L+  +L  N F  G
Sbjct: 195 TLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252

Query: 139 SIPATWSQLSNLKHLDLSSNN 159
           ++   +S+   ++ +   +  
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVK 273

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 116 LPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           + +   +    +   + ++    ++ +      N+K LDLS N L+ +I     +
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLA 55

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 13/115 (11%), Positives = 30/115 (26%), Gaps = 4/115 (3%)

Query: 81  LTLGSNGFSGKISPSITKLKFLASLELQDNDLSG----TLPDFLGSMTHLQSLNLANNKF 136
              G+       +P   +L  L   E       G     L     +    + ++    ++
Sbjct: 289 GHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQY 348

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHLICGSSLEQPC 191
              I     +      L+     L  ++     + A  + T    +    L+   
Sbjct: 349 RTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHAT 403

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.6 bits (161), Expect = 4e-12
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 5/106 (4%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            +  L +G+N  S  I+  +  L  L  L +  N +S      L +++ L SL L NN+ 
Sbjct: 244 QLTWLEIGTNQIS-DINA-VKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQL 299

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPM-QLFSVATFNFTGTHL 181
                     L+NL  L LS N++T   P+  L  + + +F    +
Sbjct: 300 GNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 75  NGNVISLTLGSNGFSGKIS--PSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLA 132
              +  L +GSN    +IS    +  L  L SL L +N L     + +G +T+L +L L+
Sbjct: 264 LTKLKMLNVGSN----QISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319

Query: 133 NNKFSGSIPATWSQLSNLKHLDLSSNNLT 161
            N  +   P   + LS +   D ++  + 
Sbjct: 320 QNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.8 bits (151), Expect = 8e-11
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           N+  L L  +  S      +  L  + SL L  N    +    L +MT L  L +  +K 
Sbjct: 111 NLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKV 167

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTG 162
               P   + L++L  L L+ N +  
Sbjct: 168 KDVTP--IANLTDLYSLSLNYNQIED 191

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.4 bits (150), Expect = 1e-10
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           N+  L L  N  +  ISP ++ L  L +L +  N ++      L ++T+L+ L L  +  
Sbjct: 67  NLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNI 122

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIP 165
           S   P   + L+ +  L+L +N+    + 
Sbjct: 123 SDISPL--ANLTKMYSLNLGANHNLSDLS 149

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.0 bits (149), Expect = 1e-10
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            + SL LG+N     +SP ++ +  L  L + ++ +    P  + ++T L SL+L  N+ 
Sbjct: 133 KMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI 189

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIP 165
               P   + L++L +     N +T   P
Sbjct: 190 EDISP--LASLTSLHYFTAYVNQITDITP 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.9 bits (146), Expect = 3e-10
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 6/86 (6%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           ++ SL+L  N     ISP +  L  L       N ++   P  + +MT L SL + NNK 
Sbjct: 178 DLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKI 233

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTG 162
           +   P   + LS L  L++ +N ++ 
Sbjct: 234 TDLSP--LANLSQLTWLEIGTNQISD 257

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.9 bits (141), Expect = 1e-09
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            +  LT+  +         I  L  L SL L  N +       L S+T L       N+ 
Sbjct: 156 GLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQI 211

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIP 165
           +   P   + ++ L  L + +N +T   P
Sbjct: 212 TDITP--VANMTRLNSLKIGNNKITDLSP 238

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.1 bits (131), Expect = 3e-08
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
           +L       + +I P    L       LQ   ++  +      +  +  L +A  K + S
Sbjct: 4   TLATLPAPIN-QIFP-DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-S 58

Query: 140 IPATWSQLSNLKHLDLSSNNLTGRIP 165
           I      L+NL++L+L+ N +T   P
Sbjct: 59  IQG-IEYLTNLEYLNLNGNQITDISP 83

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 277 NIIGQGGFGKVYKGVLSDN----TKVAVKRL-QDYYSPGGEAAFQREVHLISVAIHKNLL 331
            ++G+G FG V +  L        KVAVK L  D  +      F RE   +    H ++ 
Sbjct: 29  RMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVA 88

Query: 332 QLIGYCTTSSERILVYPFM 350
           +L+G    S  +  +   M
Sbjct: 89  KLVGVSLRSRAKGRLPIPM 107

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 9/83 (10%)

Query: 278 IIGQGGFGKVYKGVL--------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKN 329
            +GQG F K++KGV            T+V +K L          +F     ++S   HK+
Sbjct: 15  SLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKA-HRNYSESFFEAASMMSKLSHKH 73

Query: 330 LLQLIGYCTTSSERILVYPFMQN 352
           L+   G C    E ILV  F++ 
Sbjct: 74  LVLNYGVCVCGDENILVQEFVKF 96

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 65.4 bits (160), Expect = 5e-12
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 277 NIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQREVHLIS-VAIHKN 329
             +G+G FG+V +         +    VAVK L++  +     A   E+ ++  +  H N
Sbjct: 33  KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLN 92

Query: 330 LLQLIGYCTTSSERI-LVYPFMQN 352
           ++ L+G CT     + ++  F + 
Sbjct: 93  VVNLLGACTKPGGPLMVIVEFCKF 116

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 65.4 bits (160), Expect = 5e-12
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 277 NIIGQGGFGKVYKGVL----SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQ 332
            IIG G  G+V  G L      +  VA+K L+  Y+      F  E  ++    H N+++
Sbjct: 55  KIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIR 114

Query: 333 LIGYCTTSSERILVYPFMQN 352
           L G  T     ++V  +M+N
Sbjct: 115 LEGVVTRGRLAMIVTEYMEN 134

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 65.1 bits (159), Expect = 5e-12
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 14/104 (13%)

Query: 263 CRELQLATDN--FSESNI-----IGQGGFGKVYKGVL-----SDNTKVAVKRLQDYYSPG 310
               Q   D   F +  +     +G+G FGKV               VAVK L+    P 
Sbjct: 16  EVLFQGPGDPTVFHKRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQ 75

Query: 311 GEAAFQREVHLISVAIHKNLLQLIGYCTTSSER--ILVYPFMQN 352
             + +++E+ ++    H+++++  G C  +      LV  ++  
Sbjct: 76  HRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPL 119

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.9 bits (161), Expect = 6e-12
 Identities = 20/103 (19%), Positives = 44/103 (42%), Gaps = 2/103 (1%)

Query: 69  SHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLP-DFLGSMTHLQ 127
           S       ++  L L  NG    +S +   L+ L  L+ Q ++L          S+ +L 
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 128 SLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
            L++++     +    ++ LS+L+ L ++ N+        +F+
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.4 bits (152), Expect = 9e-11
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 1/94 (1%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           +  +L L  N      S S      L  L+L   ++         S++HL +L L  N  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
                  +S LS+L+ L     NL   +      
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLA-SLENFPIG 121

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF-SG 138
           +L L  N        + + L  L  L   + +L+      +G +  L+ LN+A+N   S 
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 139 SIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
            +P  +S L+NL+HLDLSSN +   I      
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLR 170

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 15/81 (18%), Positives = 26/81 (32%)

Query: 81  LTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSI 140
           L L           +   L  L++L L  N +          ++ LQ L       +   
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 141 PATWSQLSNLKHLDLSSNNLT 161
                 L  LK L+++ N + 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQ 137

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.3 bits (144), Expect = 9e-10
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDL-SGTLPDFLGSMTHLQSLNLANNKFSG 138
            L       +   +  I  LK L  L +  N + S  LP++  ++T+L+ L+L++NK   
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 139 SIPATWSQLSNLK----HLDLSSNNLTGRIPMQLFS 170
                   L  +      LDLS N +   I    F 
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK 198

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 81  LTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
           L +  N F     P I T+L+ L  L+L    L    P    S++ LQ LN+A+N+    
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509

Query: 140 IPATWSQLSNLKHLDLSSNNLTGRIPMQLF 169
               + +L++L+ + L +N      P   +
Sbjct: 510 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 81  LTLGSNG--FSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSG 138
           L L  NG  F G  S S      L  L+L  N +  T+      +  L+ L+  ++    
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK- 409

Query: 139 SIPA--TWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
            +     +  L NL +LD+S  +        +F+
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFN 442

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 98  KLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK--FSGSIPATWSQLSNLKHLDL 155
           KLK L  L    N         +  +  L+ L+L+ N   F G    +    ++LK+LDL
Sbjct: 323 KLKSLKRLTFTSNKGG-NAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 156 SSNNLT 161
           S N + 
Sbjct: 381 SFNGVI 386

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 104 SLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGR 163
           + +  + +    +PD L      ++L+L+ N        ++     L+ LDLS   +   
Sbjct: 11  TYQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-T 66

Query: 164 IPMQLFS 170
           I    + 
Sbjct: 67  IEDGAYQ 73

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 64.3 bits (157), Expect = 9e-12
 Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 18/107 (16%)

Query: 260 RFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREV 319
           R   R++ L          +G+G +G+V++G       VAVK      S   E ++ RE 
Sbjct: 4   RTVARDITL-------LECVGKGRYGEVWRGSW-QGENVAVKIF----SSRDEKSWFRET 51

Query: 320 HLISVAI--HKNLLQLIGYCTTSSERI----LVYPFMQNLSVAYRLR 360
            L +  +  H+N+L  I    TS        L+  + +  S+   L+
Sbjct: 52  ELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQ 98

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)

Query: 277 NIIGQGGFGKVYKGVL----SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQ 332
            ++G G FG+V  G L         VA+K L+  Y+      F  E  ++    H N+++
Sbjct: 51  KVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIR 110

Query: 333 LIGYCTTSSERILVYPFMQN 352
           L G  T S   ++V  +M+N
Sbjct: 111 LEGVVTKSKPVMIVTEYMEN 130

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 279 IGQGGFGKVYKGVL--------SDNTKVAVKRLQDYYSPGGEAAFQREVHLIS-VAIHKN 329
           +G+G FG+V             +  TKVAVK L+   +    +    E+ ++  +  HKN
Sbjct: 77  LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 136

Query: 330 LLQLIGYCTTSSERILVYPFMQN 352
           ++ L+G CT      ++  +   
Sbjct: 137 IINLLGACTQDGPLYVIVEYASK 159

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 279 IGQGGFGKVYKGVL---SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIG 335
           +G G FG V +GV         VA+K L+            RE  ++    +  +++LIG
Sbjct: 18  LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIG 77

Query: 336 YCTTSSERILVYPFMQN 352
            C   +  + V      
Sbjct: 78  VCQAEALML-VMEMAGG 93

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 278 IIGQGGFGKVYKGVLSD----NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQL 333
            IG+G FG V++G+          VA+K  ++  S      F +E   +    H ++++L
Sbjct: 22  CIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKL 81

Query: 334 IGYCTTSSERILVYPFMQN 352
           IG  T +   I +      
Sbjct: 82  IGVITENPVWI-IMELCTL 99

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 279 IGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYC 337
           IG+G FG+V+ G L +DNT VAVK  ++   P  +A F +E  ++    H N+++LIG C
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 181

Query: 338 TTSSERILVYPFMQN 352
           T      +V   +Q 
Sbjct: 182 TQKQPIYIVMELVQG 196

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 278 IIGQGGFGKVYKGVL---SDNTKVAVKRL-QDYYSPGGEAAFQREVHLISVAIHKNLLQL 333
            +G G FG V KG          VAVK L  +   P  +     E +++    +  ++++
Sbjct: 24  ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRM 83

Query: 334 IGYCTTSSERILVYPFMQN 352
           IG C   S  + V    + 
Sbjct: 84  IGICEAESWML-VMEMAEL 101

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            +  L L  N  +   +  +     L  ++L  N+L   +      M  L+ L ++NN+ 
Sbjct: 227 ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
             ++      +  LK LDLS N+L   +      
Sbjct: 285 V-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ 316

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 77  NVISLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
            ++ + L  N    KI      K++ L  L + +N L   L  +   +  L+ L+L++N 
Sbjct: 249 GLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH 306

Query: 136 FSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
               +     Q   L++L L  N++   + +    
Sbjct: 307 LL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHH 339

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
            L + +N     ++     +  L  L+L  N L   +         L++L L +N    +
Sbjct: 276 RLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-T 332

Query: 140 IPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           +    S    LK+L LS N+        LF 
Sbjct: 333 LKL--STHHTLKNLTLSHNDWDCNSLRALFR 361

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 3/95 (3%)

Query: 77  NVISLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
           N   +T  ++    K+  ++    + +  L L D  +             +Q L +  N 
Sbjct: 46  NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 104

Query: 136 FSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
                P  +  +  L  L L  N+L+  +P  +F 
Sbjct: 105 IRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFH 138

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 5/92 (5%)

Query: 81  LTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
           L +G N     + P +   +  L  L L+ NDLS        +   L +L+++NN     
Sbjct: 98  LYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-R 155

Query: 140 IPA-TWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           I   T+   ++L++L LSSN LT  + + L  
Sbjct: 156 IEDDTFQATTSLQNLQLSSNRLT-HVDLSLIP 186

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 11/91 (12%), Positives = 30/91 (32%), Gaps = 3/91 (3%)

Query: 81  LTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSI 140
           + +               L     +  +++ +       L S   ++ LNL + +    I
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EI 84

Query: 141 PA-TWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
               ++    ++ L +  N +   +P  +F 
Sbjct: 85  DTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQ 114

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 5/93 (5%)

Query: 80  SLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSG 138
            L L       +I          +  L +  N +    P    ++  L  L L  N  S 
Sbjct: 73  LLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS- 130

Query: 139 SIPA-TWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           S+P   +     L  L +S+NNL  RI    F 
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQ 162

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 11/94 (11%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           ++    +  N  S     ++     +  L+   N ++  +         L  L L +N  
Sbjct: 187 SLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNL 238

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           +            L  +DLS N L  +I    F 
Sbjct: 239 T-DTAW-LLNYPGLVEVDLSYNELE-KIMYHPFV 269

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 7/86 (8%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            V  L    N  +  +   +     L  L+LQ N+L+      L     L  ++L+ N+ 
Sbjct: 206 AVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTAWLLN-YPGLVEVDLSYNEL 260

Query: 137 SGSIPA-TWSQLSNLKHLDLSSNNLT 161
              I    + ++  L+ L +S+N L 
Sbjct: 261 E-KIMYHPFVKMQRLERLYISNNRLV 285

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 5/86 (5%)

Query: 77  NVISLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
            +  L L  N  S  +   I      L +L + +N+L     D   + T LQ+L L++N+
Sbjct: 118 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176

Query: 136 FSGSIPATWSQLSNLKHLDLSSNNLT 161
            +  +    S + +L H ++S N L+
Sbjct: 177 LT-HVDL--SLIPSLFHANVSYNLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 11/98 (11%)

Query: 74  RNGNVISLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLA 132
               + +L++ +N    +I          L +L+L  N L+  +   L  +  L   N++
Sbjct: 139 NTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVS 194

Query: 133 NNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
            N  S ++         ++ LD S N++   +   +  
Sbjct: 195 YNLLS-TLAI----PIAVEELDASHNSIN-VVRGPVNV 226

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 277 NIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGY 336
             IG+G FG V  G      KVAVK +++  +     AF  E  +++   H NL+QL+G 
Sbjct: 27  QTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATA---QAFLAEASVMTQLRHSNLVQLLGV 82

Query: 337 CTTSSERI-LVYPFMQN 352
                  + +V  +M  
Sbjct: 83  IVEEKGGLYIVTEYMAK 99

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 278 IIGQGGFGKVYKGVL-----SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQ 332
           +IG G FG+VYKG+L          VA+K L+  Y+      F  E  ++    H N+++
Sbjct: 51  VIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIR 110

Query: 333 LIGYCTTSSERILVYPFMQN 352
           L G  +     +++  +M+N
Sbjct: 111 LEGVISKYKPMMIITEYMEN 130

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 7/82 (8%)

Query: 277 NIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNL 330
             +G+G FGKV+           D   VAVK L++  S      FQRE  L+++  H+++
Sbjct: 47  WELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA-SESARQDFQREAELLTMLQHQHI 105

Query: 331 LQLIGYCTTSSERILVYPFMQN 352
           ++  G CT     ++V+ +M++
Sbjct: 106 VRFFGVCTEGRPLLMVFEYMRH 127

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 18/98 (18%)

Query: 264 RELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLIS 323
           +++Q+          IG+G +G+V+ G      KVAVK          EA++ RE  +  
Sbjct: 37  KQIQM-------VKQIGKGRYGEVWMGKW-RGEKVAVKVF----FTTEEASWFRETEIYQ 84

Query: 324 VAI--HKNLLQLIGYCTTSSERI----LVYPFMQNLSV 355
             +  H+N+L  I      +       L+  + +N S+
Sbjct: 85  TVLMRHENILGFIAADIKGTGSWTQLYLITDYHENGSL 122

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 63.4 bits (155), Expect = 2e-11
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 277 NIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQREVHLIS-VAIHKN 329
             +G G FGKV +              VAVK L+         A   E+ ++S +  H N
Sbjct: 29  KTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMN 88

Query: 330 LLQLIGYCTTSSERILVYPFMQN 352
           ++ L+G CT     +++  +   
Sbjct: 89  IVNLLGACTIGGPTLVITEYCCY 111

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 62.6 bits (153), Expect = 3e-11
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 7/80 (8%)

Query: 279 IGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQ 332
           +G+G FGKV+           D   VAVK L+D  +      FQRE  L++   H+++++
Sbjct: 23  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDP-TLAARKDFQREAELLTNLQHEHIVK 81

Query: 333 LIGYCTTSSERILVYPFMQN 352
             G C      I+V+ +M++
Sbjct: 82  FYGVCGDGDPLIMVFEYMKH 101

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 277 NIIGQGGFGKVYKGVLSD------NTKVAVKRLQDYYSPGGEAAFQREVHLIS-VAIHKN 329
             +G G FGKV +             KVAVK L+       + A   E+ ++S +  H+N
Sbjct: 52  KTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHEN 111

Query: 330 LLQLIGYCTTSSERILVYPFMQN 352
           ++ L+G CT     +++  +   
Sbjct: 112 IVNLLGACTHGGPVLVITEYCCY 134

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 61.8 bits (151), Expect = 5e-11
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 277 NIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGY 336
             +G G FG+V+ G  + +TKVAVK L+         AF  E +L+    H+ L++L   
Sbjct: 19  ERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMS--PDAFLAEANLMKQLQHQRLVRLYAV 76

Query: 337 CT 338
            T
Sbjct: 77  VT 78

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 62.4 bits (152), Expect = 5e-11
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 8/83 (9%)

Query: 277 NIIGQGGFGKVYKGVL-----SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLL 331
           + +G+G FG V          +    VAVK+LQ    P  +  FQRE+ ++       ++
Sbjct: 29  SQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHS-GPDQQRDFQREIQILKALHSDFIV 87

Query: 332 QLIGYCTTSSER--ILVYPFMQN 352
           +  G       +   LV  ++ +
Sbjct: 88  KYRGVSYGPGRQSLRLVMEYLPS 110

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 63.0 bits (153), Expect = 5e-11
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 279 IGQGGFGKVYKGVL---SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIG 335
           +G G FG V +GV         VA+K L+            RE  ++    +  +++LIG
Sbjct: 344 LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIG 403

Query: 336 YCTTSSERILVYPFMQN 352
            C   +  + V      
Sbjct: 404 VCQAEALML-VMEMAGG 419

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 61.9 bits (151), Expect = 5e-11
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 277 NIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIG 335
           + +G G +G+VY+GV    +  VAVK L++         F +E  ++    H NL+QL+G
Sbjct: 19  HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME--VEEFLKEAAVMKEIKHPNLVQLLG 76

Query: 336 YCTTSSERILVYPFMQN 352
            CT      ++  FM  
Sbjct: 77  VCTREPPFYIITEFMTY 93

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.6 bits (152), Expect = 6e-11
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 77  NVISLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
            ++ + L  N    KI      K++ L  L + +N L   L  +   +  L+ L+L++N 
Sbjct: 255 GLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH 312

Query: 136 FSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
               +     Q   L++L L  N++   + +    
Sbjct: 313 LL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHH 345

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.3 bits (151), Expect = 8e-11
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            +  L L  N  +   +  +     L  ++L  N+L   +      M  L+ L ++NN+ 
Sbjct: 233 ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
             ++      +  LK LDLS N+L   +      
Sbjct: 291 V-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ 322

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 11/91 (12%), Positives = 30/91 (32%), Gaps = 3/91 (3%)

Query: 81  LTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSI 140
           + +               L     +  +++ +       L S   ++ LNL + +    I
Sbjct: 32  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EI 90

Query: 141 PA-TWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
               ++    ++ L +  N +   +P  +F 
Sbjct: 91  DTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQ 120

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 81  LTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSI 140
           L + +N     ++     +  L  L+L  N L   +         L++L L +N    ++
Sbjct: 283 LYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TL 339

Query: 141 PATWSQLSNLKHLDLSSNNLT 161
               S    LK+L LS N+  
Sbjct: 340 KL--STHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 5/96 (5%)

Query: 77  NVISLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
            +  L +G N     + P +   +  L  L L+ NDLS        +   L +L+++NN 
Sbjct: 100 TIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 158

Query: 136 FSGSIPA-TWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
               I   T+   ++L++L LSSN LT  + + L  
Sbjct: 159 LE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIP 192

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 77  NVISLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
           N   +T  ++    K+  ++    + +  L L D  +             +Q L +  N 
Sbjct: 52  NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 110

Query: 136 FSGSIPA-TWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
               +P   +  +  L  L L  N+L+  +P  +F 
Sbjct: 111 IR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFH 144

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.2 bits (130), Expect = 3e-08
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 7/86 (8%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            V  L    N  +  +   +     L  L+LQ N+L+      L     L  ++L+ N+ 
Sbjct: 212 AVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTAWLLN-YPGLVEVDLSYNEL 266

Query: 137 SGSIPA-TWSQLSNLKHLDLSSNNLT 161
              I    + ++  L+ L +S+N L 
Sbjct: 267 E-KIMYHPFVKMQRLERLYISNNRLV 291

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 5/86 (5%)

Query: 77  NVISLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
            +  L L  N  S  +   I      L +L + +N+L     D   + T LQ+L L++N+
Sbjct: 124 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182

Query: 136 FSGSIPATWSQLSNLKHLDLSSNNLT 161
            +  +    S + +L H ++S N L+
Sbjct: 183 LT-HVDL--SLIPSLFHANVSYNLLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.2 bits (112), Expect = 5e-06
 Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 11/98 (11%)

Query: 74  RNGNVISLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLA 132
               + +L++ +N    +I          L +L+L  N L+  +   L  +  L   N++
Sbjct: 145 NTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVS 200

Query: 133 NNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
            N  S ++         ++ LD S N++   +   +  
Sbjct: 201 YNLLS-TLAI----PIAVEELDASHNSIN-VVRGPVNV 232

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 6e-05
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 11/82 (13%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
           +L L SN  +  +  S+  +  L    +  N LS      L     ++ L+ ++N  +  
Sbjct: 175 NLQLSSNRLT-HVDLSL--IPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-V 225

Query: 140 IPATWSQLSNLKHLDLSSNNLT 161
           +         L  L L  NNLT
Sbjct: 226 VRG--PVNVELTILKLQHNNLT 245

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.3 bits (152), Expect = 9e-11
 Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
             +   LG    +   + S T L  + +L+     +     D +  + +L  +N +NN+ 
Sbjct: 25  EKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQL 80

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIP 165
           +   P     L+ L  + +++N +    P
Sbjct: 81  TDITPL--KNLTKLVDILMNNNQIADITP 107

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           N+ SL   +N  S      +  L  L  L L  N L       L S+T+L  L+LANN+ 
Sbjct: 200 NLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQI 255

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTG 162
           S   P   S L+ L  L L +N ++ 
Sbjct: 256 SNLAP--LSGLTKLTELKLGANQISN 279

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            + +L L  N         I+ LK L  L L  N++S   P  + S+T LQ L   NNK 
Sbjct: 288 ALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 343

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQ 167
           S       + L+N+  L    N ++   P+ 
Sbjct: 344 SDVSS--LANLTNINWLSAGHNQISDLTPLA 372

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 6/89 (6%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           N+  L L +N  S      ++ L  L  L+L  N +S   P  L  +T L +L L  N+ 
Sbjct: 244 NLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 299

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIP 165
               P   S L NL +L L  NN++   P
Sbjct: 300 EDISP--ISNLKNLTYLTLYFNNISDISP 326

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 59.2 bits (144), Expect = 7e-10
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           N+  +   +N  +  I+P +  L  L  + + +N ++   P  L ++T+L  L L NN+ 
Sbjct: 69  NLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 124

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTG 162
           +   P     L+NL  L+LSSN ++ 
Sbjct: 125 TDIDPL--KNLTNLNRLELSSNTISD 148

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.8 bits (143), Expect = 9e-10
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            V +L     G    I   +  L  L  +   +N L+   P  L ++T L  + + NN+ 
Sbjct: 47  QVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI 102

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIP 165
           +   P   + L+NL  L L +N +T   P
Sbjct: 103 ADITPL--ANLTNLTGLTLFNNQITDIDP 129

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 6/91 (6%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            +  L + SN  S  IS  + KL  L SL   +N +S   P  LG +T+L  L+L  N+ 
Sbjct: 178 TLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 233

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQ 167
                 T + L+NL  LDL++N ++   P+ 
Sbjct: 234 KD--IGTLASLTNLTDLDLANNQISNLAPLS 262

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 94  PSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHL 153
             +  L  L  L++  N +S      L  +T+L+SL   NN+ S   P     L+NL  L
Sbjct: 171 KPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 226

Query: 154 DLSSNNLTG 162
            L+ N L  
Sbjct: 227 SLNGNQLKD 235

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.5 bits (137), Expect = 6e-09
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 76  GNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
           G + S T+  +    +I    T L       L   +++ T+      +  + +L      
Sbjct: 1   GPLGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLG 57

Query: 136 FSGSIPATWSQLSNLKHLDLSSNNLTGRIP 165
              SI      L+NL  ++ S+N LT   P
Sbjct: 58  IK-SIDG-VEYLNNLTQINFSNNQLTDITP 85

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 7/94 (7%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           N+  L L SN  S     +++ L  L  L    N ++   P  L ++T L+ L++++NK 
Sbjct: 135 NLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKV 189

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           S    +  ++L+NL+ L  ++N ++   P+ + +
Sbjct: 190 SD--ISVLAKLTNLESLIATNNQISDITPLGILT 221

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 4/85 (4%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           N+  L+ G N  S  ++P +  L  +  L L D   +    ++  +++   ++       
Sbjct: 354 NINWLSAGHNQISD-LTP-LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL 411

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLT 161
               PAT S   +    D++ N  +
Sbjct: 412 I--APATISDGGSYTEPDITWNLPS 434

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 61.2 bits (149), Expect = 9e-11
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 8/83 (9%)

Query: 277 NIIGQGGFGKVYKGVL-----SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLL 331
             +G+G FG V          +    VAVK+LQ   +      F+RE+ ++    H N++
Sbjct: 16  QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS-TEEHLRDFEREIEILKSLQHDNIV 74

Query: 332 QLIGYCTTSSER--ILVYPFMQN 352
           +  G C ++  R   L+  ++  
Sbjct: 75  KYKGVCYSAGRRNLKLIMEYLPY 97

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.7 bits (149), Expect = 1e-10
 Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 7/126 (5%)

Query: 36  EGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPS 95
           E       LKA++     + D            S +     +V  L L     +  +   
Sbjct: 403 ETLQYFSTLKAVDPMRAAYLDDLRSKF--LLENSVLKMEYADVRVLHLAHKDLT-VL-CH 458

Query: 96  ITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDL 155
           + +L  +  L+L  N L   LP  L ++  L+ L  ++N    ++    + L  L+ L L
Sbjct: 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDGV-ANLPRLQELLL 515

Query: 156 SSNNLT 161
            +N L 
Sbjct: 516 CNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.4 bits (130), Expect = 3e-08
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            V  L L  N     + P++  L+ L  L+  DN L   +   + ++  LQ L L NN+ 
Sbjct: 464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRL 520

Query: 137 SGSIPATW--SQLSNLKHLDLSSNNLT 161
                A         L  L+L  N+L 
Sbjct: 521 Q-QSAAIQPLVSCPRLVLLNLQGNSLC 546

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 61.8 bits (150), Expect = 1e-10
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 264 RELQLATDNFSESNIIGQGGFGKVYKGVL----SDNTKVAVKRLQDYYSPGGEAAFQREV 319
           R+ ++  +       IG+G FG V++G+     +    VA+K  ++  S      F +E 
Sbjct: 383 RDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEA 442

Query: 320 HLISVAIHKNLLQLIGYCTTSSERILVYPFMQN 352
             +    H ++++LIG  T +   I +      
Sbjct: 443 LTMRQFDHPHIVKLIGVITENPVWI-IMELCTL 474

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 8/83 (9%)

Query: 277 NIIGQGGFGKVYKGVL-----SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLL 331
             +G+G FG V          +    VAVK+LQ   +      F+RE+ ++    H N++
Sbjct: 47  QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS-TEEHLRDFEREIEILKSLQHDNIV 105

Query: 332 QLIGYCTTSSER--ILVYPFMQN 352
           +  G C ++  R   L+  ++  
Sbjct: 106 KYKGVCYSAGRRNLKLIMEYLPY 128

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 60.3 bits (147), Expect = 1e-10
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 278 IIGQGGFGKVYKGVL----SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLL 331
            +G G FG V +G           VAVK L+      P     F REV+ +    H+NL+
Sbjct: 25  KLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLI 84

Query: 332 QLIGYCTTSSERILVYPFMQN 352
           +L G   T   ++ V      
Sbjct: 85  RLYGVVLTPPMKM-VTELAPL 104

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 277 NIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGY 336
             +G G FG+V+    + +TKVAVK ++         AF  E +++    H  L++L   
Sbjct: 194 KKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMS--VEAFLAEANVMKTLQHDKLVKLHAV 251

Query: 337 CTTSSERILVYPFMQN 352
            T     I +  FM  
Sbjct: 252 VTKEPIYI-ITEFMAK 266

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 277 NIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGY 336
             +GQG FG+V+ G  +  T+VA+K L+         AF +E  ++    H+ L+QL   
Sbjct: 190 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS--PEAFLQEAQVMKKLRHEKLVQLYAV 247

Query: 337 CTTSSERILVYPFMQN 352
            +     I V  +M  
Sbjct: 248 VSEEPIYI-VTEYMSK 262

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 277 NIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGY 336
             IG+G FG V  G      KVAVK +++  +     AF  E  +++   H NL+QL+G 
Sbjct: 199 QTIGKGEFGDVMLGDYR-GNKVAVKCIKNDAT---AQAFLAEASVMTQLRHSNLVQLLGV 254

Query: 337 CTTSSERI-LVYPFMQN 352
                  + +V  +M  
Sbjct: 255 IVEEKGGLYIVTEYMAK 271

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 4/103 (3%)

Query: 80  SLTLGSNGFSGKISP-SITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSG 138
            L L  N     I    + +   L  L L  N +       L  +  L+ L+L NNK S 
Sbjct: 197 ELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS- 254

Query: 139 SIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHL 181
            +PA    L  L+ + L +NN+T ++ +  F    F     + 
Sbjct: 255 RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYY 296

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 77  NVISLTLGSNGFSGKISP-SITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
           +   L L +N  S ++       L+ L +L L +N +S         +  LQ L ++ N 
Sbjct: 55  DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 136 FSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
               IP   +  S+L  L +  N +  ++P  +FS
Sbjct: 114 LV-EIPP--NLPSSLVELRIHDNRIR-KVPKGVFS 144

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            +  L +     +  I   +   + L  L L  N +     + L   + L  L L +N+ 
Sbjct: 173 KLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229

Query: 137 SGSIPA-TWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
              I   + S L  L+ L L +N L+ R+P  L  
Sbjct: 230 R-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 2/70 (2%)

Query: 102 LASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF-SGSIPATWSQLSNLKHLDLSSNNL 160
           L  L + DN +          + ++  + +  N   +            L +L +S   L
Sbjct: 125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL 184

Query: 161 TGRIPMQLFS 170
           T  IP  L  
Sbjct: 185 T-GIPKDLPE 193

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 8/97 (8%)

Query: 77  NVISLTLGSNGFSGKISP-SITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
           ++ +L L +N  S KI   + + L+ L  L +  N L   +P      + L  L + +N+
Sbjct: 79  HLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNR 134

Query: 136 FSGSIPA-TWSQLSNLKHLDLSSNNLT-GRIPMQLFS 170
               +P   +S L N+  +++  N L         F 
Sbjct: 135 IR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 19/104 (18%)

Query: 75  NGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANN 134
             N I   + +   S         L  L  L L +N LS  +P  L  +  LQ + L  N
Sbjct: 225 GHNQIR-MIENGSLSF--------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274

Query: 135 KFSGSIPAT-------WSQLSNLKHLDLSSNNLT-GRIPMQLFS 170
             +  +            + +    + L +N +    +    F 
Sbjct: 275 NIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 11/88 (12%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPD-------FLGSMTHLQSLNLA 132
            L L +N  S ++   +  LK L  + L  N+++  +         F     +   ++L 
Sbjct: 245 ELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLF 302

Query: 133 NNKFSGSI--PATWSQLSNLKHLDLSSN 158
           NN        PAT+  +++   +   + 
Sbjct: 303 NNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 59.8 bits (145), Expect = 3e-10
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 18/97 (18%)

Query: 264 RELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQRE--VHL 321
           R + L          IG+G FG+V++G      +VAVK      S   E ++ RE  ++ 
Sbjct: 42  RTIVL-------QESIGKGRFGEVWRGKW-RGEEVAVKIF----SSREERSWFREAEIYQ 89

Query: 322 ISVAIHKNLLQLIGYCTTSSERI----LVYPFMQNLS 354
             +  H+N+L  I      +       LV  + ++ S
Sbjct: 90  TVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGS 126

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 60.3 bits (146), Expect = 4e-10
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 277 NIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGY 336
             +GQG FG+V+ G  +  T+VA+K L+         AF +E  ++    H+ L+QL   
Sbjct: 273 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS--PEAFLQEAQVMKKLRHEKLVQLYAV 330

Query: 337 CTTSSERILVYPFMQN 352
            +     I V  +M  
Sbjct: 331 VSEEPIYI-VTEYMSK 345

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 2/95 (2%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
               + L  N  S   + S    + L  L L  N L+         +  L+ L+L++N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 137 SGSIPA-TWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
             S+   T+  L  L  L L    L   +   LF 
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFR 126

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 80  SLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSG 138
           +L L   G   ++ P +   L  L  L LQDN L     D    + +L  L L  N+ S 
Sbjct: 109 TLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS- 166

Query: 139 SIPA-TWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           S+P   +  L +L  L L  N +   +    F 
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFR 198

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 5/92 (5%)

Query: 81  LTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
           L L  N     +       L  L  L L  N +S         +  L  L L  N+ +  
Sbjct: 134 LYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-H 191

Query: 140 IPA-TWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           +    +  L  L  L L +NNL+  +P +  +
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLS-ALPTEALA 222

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 9/102 (8%)

Query: 72  TCRNGNVISLTLGSNGFS---GKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQS 128
            C N   ++ +    G       I  +         + L  N +S        +  +L  
Sbjct: 7   VCYNEPKVTTSCPQQGLQAVPVGIPAASQ------RIFLHGNRISHVPAASFRACRNLTI 60

Query: 129 LNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           L L +N  +    A ++ L+ L+ LDLS N     +    F 
Sbjct: 61  LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 102

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 4/82 (4%)

Query: 81  LTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
           L L  N  S  +       L  L  L L  N ++   P     +  L +L L  N  S +
Sbjct: 158 LFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-A 215

Query: 140 IPA-TWSQLSNLKHLDLSSNNL 160
           +P    + L  L++L L+ N  
Sbjct: 216 LPTEALAPLRALQYLRLNDNPW 237

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 60.2 bits (146), Expect = 4e-10
 Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 7/117 (5%)

Query: 77  NVISLTLGSNGFSGKISPSITK-----LKFLASLELQDNDLSGTLPDFLGSMTHLQSLNL 131
           ++  L LG N         +       L  L  L L  N L+   P     +T L+ L+L
Sbjct: 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSL 511

Query: 132 ANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHLICGSSLE 188
            +N+ +  +       +NL+ LD+S N L    P    S++  + T    IC   L 
Sbjct: 512 NSNRLT-VLSH-NDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELS 566

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.4 bits (144), Expect = 8e-10
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 3/95 (3%)

Query: 77  NVISLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
           +V  L L        ++  +   LK L  L L  N ++    +    + +LQ LNL+ N 
Sbjct: 267 SVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325

Query: 136 FSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
                 + +  L  + ++DL  N++   I  Q F 
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFK 359

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.4 bits (136), Expect = 8e-09
 Identities = 20/85 (23%), Positives = 31/85 (36%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           ++  L L  N  +     +   L  L  L L  N L          +  +  ++L  N  
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLT 161
           +     T+  L  L+ LDL  N LT
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 77  NVISLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTL-PDFLGSMTHLQSLNLANN 134
               L L  N     ++ S    L+ L  LEL       T+  +   ++ +L+ L+L ++
Sbjct: 25  TTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83

Query: 135 KFSGSIPATW-SQLSNLKHLDLSSNNLT 161
           K    +       L +L  L L    L+
Sbjct: 84  KIY-FLHPDAFQGLFHLFELRLYFCGLS 110

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 75  NGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANN 134
           N N  S   G    S   +PS+ +L  L    LQ    +    D    ++HLQ L L +N
Sbjct: 434 NQNRFSSCSGDQTPSE--NPSLEQLF-LGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490

Query: 135 KFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
             +   P  +S L+ L+ L L+SN LT  +      
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLP 525

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 5/104 (4%)

Query: 73  CRNGNVISLTLGSNGFSGKISPS--ITKLKFLASLELQDNDLSG-TLPDFLGSMTHLQSL 129
               ++  L L   G S  +        LK L  L+L  N +    L    G +  L+S+
Sbjct: 94  QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153

Query: 130 NLANNKFSGSIPATWSQLS--NLKHLDLSSNNLTGRIPMQLFSV 171
           + ++N+           L    L    L++N+L  R+ +     
Sbjct: 154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 2/73 (2%)

Query: 99  LKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSI-PATWSQLSNLKHLDLSS 157
           L     L L  N +          +  LQ L L +     +I    +  L NL+ LDL S
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 158 NNLTGRIPMQLFS 170
           + +   +    F 
Sbjct: 83  SKIY-FLHPDAFQ 94

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 17/126 (13%), Positives = 43/126 (34%), Gaps = 3/126 (2%)

Query: 47  LNDTHGQFTDWNDHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLE 106
            +     +    + F +       V+     V      SN  S   + S+     +    
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246

Query: 107 LQDNDLSGTLPDFLGSM--THLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRI 164
              +++     +    +  + ++ L+L++          +  L +LK L+L+ N +  +I
Sbjct: 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KI 305

Query: 165 PMQLFS 170
             + F 
Sbjct: 306 ADEAFY 311

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 20/114 (17%), Positives = 42/114 (36%), Gaps = 14/114 (12%)

Query: 58  NDHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLP 117
           N   +    ++  +      + +L L  N  +     +I  +  +  + L  N L  TLP
Sbjct: 348 NHIAIIQDQTFKFLE----KLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV-TLP 397

Query: 118 DFLGSMTHLQSLNLANNKFSG-SIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
               +      ++L+ N+     I     ++ +L+ L L+ N  +     Q  S
Sbjct: 398 KINLT---ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 59.6 bits (145), Expect = 5e-10
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 9/106 (8%)

Query: 76  GNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
            ++  +  G+N    ++ P +  L FL ++   +N L   LPD   S   L+S+   NN 
Sbjct: 173 PSLEFIAAGNNQLE-EL-PELQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNI 226

Query: 136 FSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHL 181
                      L  L  +   +N L   +P    S+   N    +L
Sbjct: 227 LE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYL 269

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 7/77 (9%)

Query: 94  PSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHL 153
           P +    FL  +++ +N L   LPD   S   L+ +   NN+    +P     L  L  +
Sbjct: 147 PELQNSSFLKIIDVDNNSLK-KLPDLPPS---LEFIAAGNNQLE-ELP-ELQNLPFLTAI 200

Query: 154 DLSSNNLTGRIPMQLFS 170
              +N+L  ++P    S
Sbjct: 201 YADNNSLK-KLPDLPLS 216

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 21/113 (18%)

Query: 73  CRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLA 132
           C +     L L + G S  +      L+   SL    N L+  LP+   S+  L   N  
Sbjct: 68  CLDRQAHELELNNLGLS-SLPELPPHLE---SLVASCNSLT-ELPELPQSLKSLLVDNNN 122

Query: 133 NNKFSGSIPATWS---------------QLSNLKHLDLSSNNLTGRIPMQLFS 170
               S   P                     S LK +D+ +N+L  ++P    S
Sbjct: 123 LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPS 174

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 12/86 (13%)

Query: 76  GNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
            N+  L   SN     +      L+    L + +N L   LP        L+ L  + N 
Sbjct: 297 PNLYYLNASSNEIR-SLCDLPPSLE---ELNVSNNKLI-ELPALPPR---LERLIASFNH 348

Query: 136 FSGSIPATWSQLSNLKHLDLSSNNLT 161
            +  +P       NLK L +  N L 
Sbjct: 349 LA-EVP---ELPQNLKQLHVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 12/86 (13%)

Query: 76  GNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
            ++ +L +  N  +  +      L FL   E   + LS   P       +L  LN ++N+
Sbjct: 257 PSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNE 308

Query: 136 FSGSIPATWSQLSNLKHLDLSSNNLT 161
              S+        +L+ L++S+N L 
Sbjct: 309 IR-SLC---DLPPSLEELNVSNNKLI 330

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 16/94 (17%), Positives = 27/94 (28%), Gaps = 18/94 (19%)

Query: 81  LTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGS-------------MTHLQ 127
               S+  + ++      +K         ++     P   G                   
Sbjct: 16  PLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAH 74

Query: 128 SLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLT 161
            L L N   S S+P       +L+ L  S N+LT
Sbjct: 75  ELELNNLGLS-SLP---ELPPHLESLVASCNSLT 104

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 13/103 (12%), Positives = 33/103 (32%), Gaps = 15/103 (14%)

Query: 92  ISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLS--- 148
           I+P      FL       ++L+  +P    ++        A +++  + P    +     
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 149 ----------NLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHL 181
                         L+L++  L+  +P     + +   +   L
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLS-SLPELPPHLESLVASCNSL 103

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 7/79 (8%)

Query: 83  LGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPA 142
           L  N    ++      LK    L ++ N L    PD   S   ++ L + + +       
Sbjct: 382 LRMNSHLAEVPELPQNLK---QLHVETNPLR-EFPDIPES---VEDLRMNSERVVDPYEF 434

Query: 143 TWSQLSNLKHLDLSSNNLT 161
                  L+      ++  
Sbjct: 435 AHETTDKLEDDVFEHHHHH 453

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 2/95 (2%)

Query: 77  NVISLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
           N+ SL +G N     IS    + L  L  L L+  +L+    + L  +  L  L L +  
Sbjct: 129 NLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187

Query: 136 FSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
            +     ++ +L  LK L++S       +      
Sbjct: 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 3/92 (3%)

Query: 80  SLTLGSNGFSGKISP-SITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSG 138
            LTL     +  I   +++ L  L  L L+  +++         +  L+ L +++  +  
Sbjct: 156 QLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214

Query: 139 SIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           ++        NL  L ++  NLT  +P     
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLT-AVPYLAVR 245

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 69  SHVTCRNGNVISLTLGSNGFSGKISP-SITKLKFLASLELQDNDLSGTLPDFLGSMTHLQ 127
           +       N+ SL++     +  +   ++  L +L  L L  N +S      L  +  LQ
Sbjct: 217 TPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQ 275

Query: 128 SLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLF----SVATFNFTGTHLIC 183
            + L   + +   P  +  L+ L+ L++S N LT  +   +F    ++ T       L C
Sbjct: 276 EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLAC 334

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 3/92 (3%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
            L +    +   ++P+      L SL +   +L+      +  + +L+ LNL+ N  S +
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-T 262

Query: 140 IPATW-SQLSNLKHLDLSSNNLTGRIPMQLFS 170
           I  +   +L  L+ + L    L   +    F 
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLA-VVEPYAFR 293

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 3/95 (3%)

Query: 77  NVISLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
           ++  L L  N  S  + P     L  L +L L+ N L          +++L  L+++ NK
Sbjct: 57  HLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK 115

Query: 136 FSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
               +   +  L NLK L++  N+L   I  + FS
Sbjct: 116 IVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFS 149

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 53.6 bits (129), Expect = 4e-08
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 17/108 (15%)

Query: 65  CFSWS-HVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSM 123
           C +    V C     +++  G       I            L+L  N +     D   S 
Sbjct: 9   CSAQDRAVLCHRKRFVAVPEG-------IPTETR------LLDLGKNRIKTLNQDEFASF 55

Query: 124 THLQSLNLANNKFSGSIPA-TWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
            HL+ L L  N  S ++    ++ L NL+ L L SN L   IP+ +F+
Sbjct: 56  PHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFT 101

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.8 bits (127), Expect = 8e-08
 Identities = 25/93 (26%), Positives = 33/93 (35%), Gaps = 5/93 (5%)

Query: 80  SLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSG 138
            L +  N     +   +   L  L SLE+ DNDL          +  L+ L L     + 
Sbjct: 108 KLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT- 165

Query: 139 SIPATW-SQLSNLKHLDLSSNNLTGRIPMQLFS 170
           SIP    S L  L  L L   N+   I    F 
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFK 197

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 59.0 bits (142), Expect = 6e-10
 Identities = 29/196 (14%), Positives = 56/196 (28%), Gaps = 25/196 (12%)

Query: 65  CFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDF-LGSM 123
               S + C     +                +   + L  L +++      L    L  +
Sbjct: 7   PHGSSGLRCTRDGALD-----------SLHHLPGAENLTELYIENQQHLQHLELRDLRGL 55

Query: 124 THLQSLNLANNKFSGSIPA-TWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHL- 181
             L++L +  +     +    +     L  L+LS N L   +  +         +   L 
Sbjct: 56  GELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQ----GLSLQELV 109

Query: 182 ICGSSLEQPCMSRPSPPVSTSRTKLRIVVASASCGAFVLLSLGALFACRYQKLRKLKHDV 241
           + G+ L   C  R             +      C     L+     +C    L+    + 
Sbjct: 110 LSGNPLHCSCALRWLQR-WEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNA 168

Query: 242 FFDVAGED---DCKVS 254
             DV G+D    C+V 
Sbjct: 169 SVDV-GDDVLLRCQVE 183

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 2/91 (2%)

Query: 81  LTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
           L +  N F     P I T+L+ L  L+L    L    P    S++ LQ LN+++N F   
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214

Query: 140 IPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
               +  L++L+ LD S N++      Q   
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIM-TSKKQELQ 244

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 19/97 (19%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPD--FLGSMTHLQSLNLANN 134
           ++  L L  NG    +S +   L+ L  L+ Q ++L   + +     S+ +L  L++++ 
Sbjct: 79  SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHT 136

Query: 135 KFSGSIPATW-SQLSNLKHLDLSSNNLTGRIPMQLFS 170
                      + LS+L+ L ++ N+        +F+
Sbjct: 137 HTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 77  NVISLTLGSNGFSGKISPSIT--KLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANN 134
            +  L+L SNG S K   S +      L  L+L  N +  T+      +  L+ L+  ++
Sbjct: 53  QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHS 111

Query: 135 KFSGSIPA--TWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
                +     +  L NL +LD+S  +        +F+
Sbjct: 112 NLK-QMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFN 147

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 102 LASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK--FSGSIPATWSQLSNLKHLDLSSNN 159
              LEL+ N L          +T L  L+L++N   F G    +    ++LK+LDLS N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 160 LT 161
           + 
Sbjct: 90  VI 91

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 5/83 (6%)

Query: 81  LTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
           L L       ++SP+    L  L  L +  N+           +  LQ L+ + N    +
Sbjct: 180 LDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-T 237

Query: 140 IPATWSQ--LSNLKHLDLSSNNL 160
                 Q   S+L  L+L+ N+ 
Sbjct: 238 SKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 124 THLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLT 161
           +    L L +NK        + +L+ L  L LSSN L+
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 277 NIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIG 335
           + +G G +G+VY+GV    +  VAVK L++         F +E  ++    H NL+QL+G
Sbjct: 226 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME--VEEFLKEAAVMKEIKHPNLVQLLG 283

Query: 336 YCTTSSERILVYPFMQN 352
            CT      ++  FM  
Sbjct: 284 VCTREPPFYIITEFMTY 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 77  NVISLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
           ++  L LG N    +I       L  L +LEL DN L+         ++ L+ L L NN 
Sbjct: 100 HLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP 158

Query: 136 FSGSIPA-TWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
              SIP+  ++++ +L  LDL        I    F 
Sbjct: 159 IE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.3 bits (136), Expect = 6e-09
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 3/95 (3%)

Query: 76  GNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
            N+  L LG       + P++T L  L  LE+  N      P     ++ L+ L + N++
Sbjct: 196 FNLKYLNLGMCNIK-DM-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253

Query: 136 FSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
            S      +  L++L  L+L+ NNL+  +P  LF+
Sbjct: 254 VSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFT 287

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 13/103 (12%)

Query: 73  CR-NGNVISLTLGSNGFS---GKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQS 128
           C  +     +     G S     I  +   L       L +N++     D    + HL+ 
Sbjct: 50  CSCSNQFSKVVCTRRGLSEVPQGIPSNTRYL------NLMENNIQMIQADTFRHLHHLEV 103

Query: 129 LNLANNKFSGSIPA-TWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           L L  N     I    ++ L++L  L+L  N LT  IP   F 
Sbjct: 104 LQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFE 144

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 81  LTLGSNGFSGKISP-SITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
           L +  N F  +I P S   L  L  L + ++ +S    +    +  L  LNLA+N  S S
Sbjct: 223 LEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-S 280

Query: 140 IPA-TWSQLSNLKHLDLSSNNL 160
           +P   ++ L  L  L L  N  
Sbjct: 281 LPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 81  LTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
           L L  N  +  I       L  L  L L++N +          +  L  L+L   K    
Sbjct: 128 LELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY 186

Query: 140 IPA-TWSQLSNLKHLDLSSNNLT 161
           I    +  L NLK+L+L   N+ 
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCNIK 209

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 11/97 (11%)

Query: 75  NGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANN 134
           + N I  T+    F+G        L  L +LEL DN L+         ++ L+ L L NN
Sbjct: 96  SRNHIR-TIEIGAFNG--------LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146

Query: 135 KFSGSIPA-TWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
               SIP+  ++++ +L+ LDL        I    F 
Sbjct: 147 PIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.5 bits (139), Expect = 3e-09
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           N+  L L       +I P++T L  L  L+L  N LS   P     + HLQ L +  ++ 
Sbjct: 186 NLRYLNLAMCNLR-EI-PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
                  +  L +L  ++L+ NNLT  +P  LF+
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFT 276

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.0 bits (130), Expect = 3e-08
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 12/97 (12%)

Query: 75  NGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANN 134
           + N I   +  N F          L+ L  L+L  N +          + +L +L L +N
Sbjct: 72  HENQIQ-IIKVNSFKH--------LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 135 KFSGSIPATW-SQLSNLKHLDLSSNNLTGRIPMQLFS 170
           + + +IP      LS LK L L +N +   IP   F+
Sbjct: 123 RLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFN 157

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 53.6 bits (129), Expect = 5e-08
 Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 11/102 (10%)

Query: 73  CR-NGNVISLTLGSNGFS---GKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQS 128
           C  +     +             IS +         L L +N +     +    + HL+ 
Sbjct: 39  CSCSNQFSKVICVRKNLREVPDGISTNTR------LLNLHENQIQIIKVNSFKHLRHLEI 92

Query: 129 LNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           L L+ N         ++ L+NL  L+L  N LT  IP   F 
Sbjct: 93  LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFV 133

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 4/83 (4%)

Query: 80  SLTLGSNGFSGKISP-SITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSG 138
            L L  N  S  I P S   L  L  L +  + +     +   ++  L  +NLA+N  + 
Sbjct: 211 ELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT- 268

Query: 139 SIPA-TWSQLSNLKHLDLSSNNL 160
            +P   ++ L +L+ + L  N  
Sbjct: 269 LLPHDLFTPLHHLERIHLHHNPW 291

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 57.7 bits (139), Expect = 3e-09
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 10/93 (10%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQS----LNLANNK 135
            L++ +N  +  +      L+   +L++  N L  +LP       H +          N+
Sbjct: 164 VLSVRNNQLT-FLPELPESLE---ALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENR 218

Query: 136 FSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQL 168
            +  IP     L     + L  N L+ RI   L
Sbjct: 219 IT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 11/89 (12%)

Query: 73  CRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLA 132
           C       L L     S  +  ++     +  LE+  N L  +LP+   S   L+ L+  
Sbjct: 56  CLINQFSELQLNRLNLS-SLPDNLPPQ--ITVLEITQNALI-SLPELPAS---LEYLDAC 108

Query: 133 NNKFSGSIPATWSQLSNLKHLDLSSNNLT 161
           +N+ S ++P      ++LKHLD+ +N LT
Sbjct: 109 DNRLS-TLPE---LPASLKHLDVDNNQLT 133

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 13/95 (13%)

Query: 76  GNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
            ++  L    N  S  +      LK    L++ +N L+  LP+       L+ +N  NN+
Sbjct: 100 ASLEYLDACDNRLS-TLPELPASLK---HLDVDNNQLT-MLPELPAL---LEYINADNNQ 151

Query: 136 FSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
            +  +P      ++L+ L + +N LT  +P    S
Sbjct: 152 LT-MLPE---LPTSLEVLSVRNNQLT-FLPELPES 181

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 6/91 (6%)

Query: 81  LTLGSNGFSGKISPSITKLKFL----ASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           L + +N     +     +             ++N ++  +P+ + S+    ++ L +N  
Sbjct: 185 LDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPL 242

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQ 167
           S  I  + SQ +            +     Q
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 104 SLELQDNDLSGTLPDFLGSMTHLQSLNLAN---NKFSGSIPATWSQLSNLKHLDLSSNNL 160
           S     N +SGT  D+  +    +   L     N+    +      ++    L L+  NL
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE--CLINQFSELQLNRLNL 71

Query: 161 TGRIPMQLFS 170
           +  +P  L  
Sbjct: 72  S-SLPDNLPP 80

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.7 bits (137), Expect = 3e-09
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 81  LTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
           L L  N      S +       L  L L   +L+  L    G++  L +L+L++N+   S
Sbjct: 36  LHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQLQ-S 91

Query: 140 IPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           +P     L  L  LD+S N LT  +P+    
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLT-SLPLGALR 121

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 81  LTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
           L +  N  +  +       L  L  L L+ N+L    P  L     L+ L+LANN  +  
Sbjct: 105 LDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-E 162

Query: 140 IPA-TWSQLSNLKHLDLSSNNLTGRIPMQLF 169
           +PA   + L NL  L L  N+L   IP   F
Sbjct: 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
           +L L  N     +      L  L  L++  N L+      L  +  LQ L L  N+   +
Sbjct: 81  TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-T 138

Query: 140 IPA-TWSQLSNLKHLDLSSNNLTGRIPMQLF 169
           +P    +    L+ L L++NNLT  +P  L 
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLT-ELPAGLL 168

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 3/79 (3%)

Query: 81  LTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
           L L  N     + P + T    L  L L +N+L+      L  + +L +L L  N    +
Sbjct: 129 LYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186

Query: 140 IPATWSQLSNLKHLDLSSN 158
           IP  +     L    L  N
Sbjct: 187 IPKGFFGSHLLPFAFLHGN 205

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 80  SLTLGSNGFSGKISP-SITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSG 138
            L L  N  + K+   S+  L  LA L L  N +S      L +  HL+ L+L NNK   
Sbjct: 196 ELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV- 253

Query: 139 SIPATWSQLSNLKHLDLSSNNLTGRIPMQLF 169
            +P   +    ++ + L +NN++  I    F
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNIS-AIGSNDF 283

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            +  + +     +  I   +     L  L L  N ++      L  + +L  L L+ N  
Sbjct: 172 KLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           S     + +   +L+ L L++N L  ++P  L  
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 7/79 (8%)

Query: 92  ISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLK 151
           + P          L+LQ+N ++        ++ +L +L L NNK S   P  ++ L  L+
Sbjct: 50  LPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103

Query: 152 HLDLSSNNLTGRIPMQLFS 170
            L LS N L   +P ++  
Sbjct: 104 RLYLSKNQLK-ELPEKMPK 121

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 12/100 (12%)

Query: 80  SLTLGSNGFSGKISP-SITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSG 138
            L L  N  S  +   S+     L  L L +N L   +P  L    ++Q + L NN  S 
Sbjct: 220 KLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS- 276

Query: 139 SIPATW-------SQLSNLKHLDLSSNNLT-GRIPMQLFS 170
           +I +         ++ ++   + L SN +    I    F 
Sbjct: 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 102 LASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSI--PATWSQLSNLKHLDLSSNN 159
           L  L + +N+++         +  +  + L  N    S      +  +  L ++ ++  N
Sbjct: 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182

Query: 160 LTGRIPMQLFS 170
           +T  IP  L  
Sbjct: 183 IT-TIPQGLPP 192

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 8/97 (8%)

Query: 77  NVISLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
           N+ +L L +N  S KISP     L  L  L L  N L   LP+       LQ L +  N+
Sbjct: 77  NLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENE 132

Query: 136 FSGSIPA-TWSQLSNLKHLDLSSNNLT-GRIPMQLFS 170
            +  +    ++ L+ +  ++L +N L    I    F 
Sbjct: 133 IT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 9/87 (10%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSG------TLPDFLGSMTHLQSLNLAN 133
            L L +N    K+   +   K++  + L +N++S         P +         ++L +
Sbjct: 244 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

Query: 134 NKFSGSI--PATWSQLSNLKHLDLSSN 158
           N        P+T+  +     + L + 
Sbjct: 303 NPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.8 bits (137), Expect = 3e-09
 Identities = 23/129 (17%), Positives = 37/129 (28%), Gaps = 13/129 (10%)

Query: 44  LKALNDTHGQFTDWNDHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLA 103
           LK L     +               S +         LTL +   +G   P + +     
Sbjct: 70  LKRLTVRAARIPSRILFGALRVLGISGLQ-------ELTLENLEVTGTAPPPLLEATGPD 122

Query: 104 SLELQDNDLS-GTLPDFLGSM-----THLQSLNLANNKFSGSIPATWSQLSNLKHLDLSS 157
              L   ++S  T   +L  +       L+ L++A                 L  LDLS 
Sbjct: 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182

Query: 158 NNLTGRIPM 166
           N   G   +
Sbjct: 183 NPELGERGL 191

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 50.7 bits (121), Expect = 3e-07
 Identities = 22/106 (20%), Positives = 34/106 (32%), Gaps = 6/106 (5%)

Query: 58  NDHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTL 116
           N    +P    S +      +  L L  N                L SL L    L   +
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QV 268

Query: 117 PDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTG 162
           P  L +   L  L+L+ N+     P+   +L  + +L L  N    
Sbjct: 269 PKGLPA--KLSVLDLSYNRLD-RNPSPD-ELPQVGNLSLKGNPFLD 310

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 19/147 (12%), Positives = 49/147 (33%), Gaps = 5/147 (3%)

Query: 20  LVIFLNFGHSSREPDVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWSHVTCRNGNVI 79
           L +        +   +  + +   +K L       TD + + +     +           
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSG-----TLPDFLGSMTHLQSLNLANN 134
               G   F+   S  +++L  + ++ ++   +        L      +  ++ + + N+
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 135 KFSGSIPATWSQLSNLKHLDLSSNNLT 161
           K      +    L +L+ LDLS N + 
Sbjct: 321 KVFLVPCSFSQHLKSLEFLDLSENLMV 347

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.9 bits (135), Expect = 9e-09
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 77  NVISLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
           N+  L L S+  +  I       L  L  L+L DN LS     + G ++ L+ LNL  N 
Sbjct: 51  NLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109

Query: 136 FSG-SIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           +    + + +  L+NL+ L + +      I    F+
Sbjct: 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            + SL L  N  +      +     L  L L+ + ++    D   S+  L+ L+L++N  
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 137 SGSIPATW-SQLSNLKHLDLSSNNLTGRIPMQLFS 170
           S S+ ++W   LS+LK+L+L  N         LF 
Sbjct: 87  S-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 77  NVISLTLGSNGFSGKISPS---ITKLKFLASLELQDNDLS--GTLPDFLGSMTHLQSLNL 131
           ++  L L  N    +   +         L +L L  N L       + L ++ +L SL++
Sbjct: 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394

Query: 132 ANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           + N F   +P +      ++ L+LSS  +   +   +  
Sbjct: 395 SRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQ 431

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.6 bits (129), Expect = 5e-08
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTL---PDFLGSMTHLQSLNLAN 133
            V  +T+ ++            LK L  L+L +N +           G+   LQ+L L+ 
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

Query: 134 NKFSGSIPATW---SQLSNLKHLDLSSNNLT 161
           N    S+  T      L NL  LD+S N   
Sbjct: 371 NHLR-SMQKTGEILLTLKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.2 bits (128), Expect = 8e-08
 Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 3/84 (3%)

Query: 81  LTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSI 140
           L +        +S   + L+ +  + ++++ +      F   +  L+ L+L+ N      
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350

Query: 141 PATWS---QLSNLKHLDLSSNNLT 161
               +      +L+ L LS N+L 
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 7/92 (7%)

Query: 81  LTLGSNGFS--GKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSG 138
           L L  N      K    +  LK L SL++  N     +PD       ++ LNL++     
Sbjct: 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR- 423

Query: 139 SIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
            +         L+ LD+S+NNL     + L  
Sbjct: 424 VVK--TCIPQTLEVLDVSNNNLD-SFSLFLPR 452

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 2/100 (2%)

Query: 77  NVISLTLGSNGFSGKISP-SITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
           N+ +L +G+     +I       L  L  LE++   L       L S+  +  L L  ++
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 136 FSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFN 175
            +  +      LS++++L+L   NL  R       V   +
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVS 222

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            +  L + +N      S  + +L+    L +  N L  TLPD       L  + ++ N+ 
Sbjct: 432 TLEVLDVSNNNLD-SFSLFLPRLQ---ELYISRNKLK-TLPDA-SLFPVLLVMKISRNQL 485

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLF 169
                  + +L++L+ + L +N      P   +
Sbjct: 486 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 518

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 104 SLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGR 163
             + +    + ++P  L     ++SL+L+ NK +          +NL+ L L S+ +   
Sbjct: 9   VCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-T 64

Query: 164 IPMQLFS 170
           I    F 
Sbjct: 65  IEGDAFY 71

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.2 bits (138), Expect = 4e-09
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 9/96 (9%)

Query: 73  CRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLA 132
           C N     L +G +G +  +   +     + +L + DN+L+ +LP        L++L ++
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPP---ELRTLEVS 89

Query: 133 NNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQL 168
            N+ + S+P     L  L        +L   +P  L
Sbjct: 90  GNQLT-SLPVLPPGLLELSIFSNPLTHLP-ALPSGL 123

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.8 bits (137), Expect = 5e-09
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 12/95 (12%)

Query: 67  SWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHL 126
             +H+      +  L +  N  +  +      L+    L + DN L+ +LP        L
Sbjct: 112 PLTHLPALPSGLCKLWIFGNQLT-SLPVLPPGLQ---ELSVSDNQLA-SLPALPS---EL 163

Query: 127 QSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLT 161
             L   NN+ + S+P      S L+ L +S N L 
Sbjct: 164 CKLWAYNNQLT-SLPM---LPSGLQELSVSDNQLA 194

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.1 bits (135), Expect = 9e-09
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 12/86 (13%)

Query: 76  GNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
             +  L++  N  +  +    ++L     L   +N L+ +LP        L+ L ++ N+
Sbjct: 181 SGLQELSVSDNQLA-SLPTLPSELY---KLWAYNNRLT-SLPALPSG---LKELIVSGNR 232

Query: 136 FSGSIPATWSQLSNLKHLDLSSNNLT 161
            + S+P      S LK L +S N LT
Sbjct: 233 LT-SLPVL---PSELKELMVSGNRLT 254

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 8/86 (9%)

Query: 76  GNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
             +  L +  N  +  +    + L    SL +  N L+  LP+ L  ++   ++NL  N 
Sbjct: 241 SELKELMVSGNRLT-SLPMLPSGLL---SLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 295

Query: 136 FSGSIPATWSQLSNLKHLDLSSNNLT 161
            S     T   L  +      S  + 
Sbjct: 296 LS---ERTLQALREITSAPGYSGPII 318

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.6 bits (134), Expect = 8e-09
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 5/96 (5%)

Query: 77  NVISLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
           N+ SL L  N  +  IS      +  L  L+L  N L          +  L+ L L NN 
Sbjct: 65  NLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH 123

Query: 136 FSGSIPA-TWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
               +    +  ++ L+ L LS N ++ R P++L  
Sbjct: 124 IV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIK 157

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 10/81 (12%)

Query: 92  ISPSITKLKFLASLELQDNDLSGTLPD-FLGSMTHLQSLNLANNKFSGSIPA-TWSQLSN 149
           +      L      +L  N+LS    +     +T+L SL L++N  +  I +  +  + N
Sbjct: 37  LPSYTALL------DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPN 89

Query: 150 LKHLDLSSNNLTGRIPMQLFS 170
           L++LDLSSN+L   +   LFS
Sbjct: 90  LRYLDLSSNHLH-TLDEFLFS 109

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 97  TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPA----TWSQLSNLKH 152
           + L+ L  L L +N +     +    M  LQ L L+ N+ S   P       ++L  L  
Sbjct: 109 SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLML 167

Query: 153 LDLSSNNLTGRIPMQLFS 170
           LDLSSN L  ++P+    
Sbjct: 168 LDLSSNKLK-KLPLTDLQ 184

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 55.7 bits (134), Expect = 8e-09
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 271 DNFSESNIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQREV-HLIS 323
           D       +G+G FG+V +         +    VAVK L++  +     A   E+  LI 
Sbjct: 22  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 81

Query: 324 VAIHKNLLQLIGYCTTSSERILV-YPFMQN 352
           +  H N++ L+G CT     ++V   F + 
Sbjct: 82  IGHHLNVVNLLGACTKPGGPLMVIVEFCKF 111

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 4/93 (4%)

Query: 81  LTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSI 140
                +G         +K+     L+  +N L+ T+ +  G +T L++L L  N+    +
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-EL 363

Query: 141 PAT---WSQLSNLKHLDLSSNNLTGRIPMQLFS 170
                  +Q+ +L+ LD+S N+++        S
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.2 bits (120), Expect = 6e-07
 Identities = 16/131 (12%), Positives = 43/131 (32%), Gaps = 3/131 (2%)

Query: 34  DVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWSHVTCRNGNVISLT---LGSNGFSG 90
           +    + I +L+ +  T   +   ++  +     +        ++ +L+   + S+ F  
Sbjct: 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGF 290

Query: 91  KISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNL 150
             S        +       +            ++    L+ +NN  + ++      L+ L
Sbjct: 291 PQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTEL 350

Query: 151 KHLDLSSNNLT 161
           + L L  N L 
Sbjct: 351 ETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 2/118 (1%)

Query: 44  LKALNDTHGQFTDWNDHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLA 103
           L  L   + + T WN         W H T    ++ ++ L           S T LK L+
Sbjct: 222 LSNLTLNNIETT-WNSFIRILQLVW-HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279

Query: 104 SLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLT 161
             ++  +             +++   N   +          S++S   HLD S+N LT
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 81  LTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
           L +  N  S        +  K L SL +  N L+ T+   L     ++ L+L +NK   S
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-S 435

Query: 140 IPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           IP    +L  L+ L+++SN L   +P  +F 
Sbjct: 436 IPKQVVKLEALQELNVASNQLK-SVPDGIFD 465

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           +++SL + SN  +  I   +     +  L+L  N +  ++P  +  +  LQ LN+A+N+ 
Sbjct: 400 SLLSLNMSSNILTDTIFRCLPPR--IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL 456

Query: 137 SGSIP-ATWSQLSNLKHLDLSSNNL 160
             S+P   + +L++L+ + L +N  
Sbjct: 457 K-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.2 bits (112), Expect = 5e-06
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 105 LELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLT 161
           L +  N +S      + S++ L+ L +++N+      + +     L++LDLS N L 
Sbjct: 26  LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 3/93 (3%)

Query: 81  LTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF-SG 138
           L +        I  +    L  L  L+L  N            + +L+ L L        
Sbjct: 59  LKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA 118

Query: 139 SIPATW-SQLSNLKHLDLSSNNLTGRIPMQLFS 170
            +   +   L++L+ L L  NN+    P   F 
Sbjct: 119 VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 53.6 bits (129), Expect = 4e-08
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 9/128 (7%)

Query: 47  LNDTHGQFTDWNDHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSI-TKLKFLASL 105
           L++++   + +         +++        V +  L  +     +  S+ +    L  L
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQL 304

Query: 106 ELQDNDLSGTLPD--FLGSMTHLQSLNLANNKFSGSIPA-TWSQLSNLKHLDLSSNNLTG 162
            L  N+++  + D  F G +THL  LNL+ N    SI +  +  L  L+ LDLS N++  
Sbjct: 305 TLAQNEIN-KIDDNAFWG-LTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR- 360

Query: 163 RIPMQLFS 170
            +  Q F 
Sbjct: 361 ALGDQSFL 368

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.1 bits (120), Expect = 6e-07
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 7/94 (7%)

Query: 80  SLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFL-GSMTHLQSLNLANNKFS 137
            LTL  N  + KI  +    L  L  L L  N L  ++   +  ++  L+ L+L+ N   
Sbjct: 303 QLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR 360

Query: 138 GSIPA-TWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
            ++   ++  L NLK L L +N L   +P  +F 
Sbjct: 361 -ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFD 392

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.4 bits (118), Expect = 9e-07
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 2/68 (2%)

Query: 104 SLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPA-TWSQLSNLKHLDLSSNNLTG 162
            ++L  N ++         +  LQ L +        I   T+  LS+L  L L  N    
Sbjct: 34  YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL- 92

Query: 163 RIPMQLFS 170
           ++    F+
Sbjct: 93  QLETGAFN 100

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 24/105 (22%), Positives = 31/105 (29%), Gaps = 5/105 (4%)

Query: 81  LTLGSNGFSGKISPSIT--KLKFLASLELQDNDLSGTLPD-FLGSMTHLQSLNLANNKFS 137
           LTL      G +        L  L  L L+DN++    P  F  +M     L+L  NK  
Sbjct: 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167

Query: 138 GSIPATWSQL--SNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTH 180
                        +   L LSS  L       L      N     
Sbjct: 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           +++ L L  N      S     L  L  L+L  N +          + +L+ L L  N+ 
Sbjct: 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383

Query: 137 SGSIPA-TWSQLSNLKHLDLSSNNL 160
             S+P   + +L++L+ + L +N  
Sbjct: 384 K-SVPDGIFDRLTSLQKIWLHTNPW 407

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.7 bits (131), Expect = 2e-08
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            + SL+L  NG S  I+  +  L  L SL L +N ++      L  +T L +L+L +N+ 
Sbjct: 110 KLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI 165

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLT 161
           S  I    + L+ L++L LS N+++
Sbjct: 166 S-DIVP-LAGLTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.8 bits (126), Expect = 9e-08
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           N+  L L  N     +S  +  LK L SL L+ N +S  + + L  +  L+SL L NNK 
Sbjct: 88  NLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKI 143

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLT 161
           +  I    S+L+ L  L L  N ++
Sbjct: 144 T-DITVL-SRLTKLDTLSLEDNQIS 166

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 6/85 (7%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           ++  +   ++     +   I  L  +  L L  N L+   P  L ++ +L  L L  NK 
Sbjct: 44  SIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 99

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLT 161
              + +    L  LK L L  N ++
Sbjct: 100 K-DLSSL-KDLKKLKSLSLEHNGIS 122

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.7 bits (118), Expect = 9e-07
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 6/99 (6%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            + SL LG+N  +  I+  +++L  L +L L+DN +S      L  +T LQ+L L+ N  
Sbjct: 132 QLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHI 187

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFN 175
           S  + A  + L NL  L+L S     +      ++   N
Sbjct: 188 S-DLRAL-AGLKNLDVLELFSQECLNKPINHQSNLVVPN 224

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.8 bits (113), Expect = 3e-06
 Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 91  KISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNL 150
           +I P            L+   ++  +      +  +  +   N+    S+      L N+
Sbjct: 13  QIFP-DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQGI-QYLPNV 67

Query: 151 KHLDLSSNNLT 161
             L L+ N LT
Sbjct: 68  TKLFLNGNKLT 78

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 4/84 (4%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            + +L+L  N  S  I P +  L  L +L L  N +S      L  + +L  L L + + 
Sbjct: 154 KLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQEC 209

Query: 137 SGSIPATWSQLSNLKHLDLSSNNL 160
                   S L     +  +  +L
Sbjct: 210 LNKPINHQSNLVVPNTVKNTDGSL 233

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            + +L    N  +      +++ K L  L    N+++  L   L     L  L+ ++NK 
Sbjct: 171 QLTTLDCSFNKIT---ELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKL 224

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLT 161
           +  I    + L+ L + D S N LT
Sbjct: 225 T-EID--VTPLTQLTYFDCSVNPLT 246

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 6/86 (6%)

Query: 76  GNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
            N   +   + G        +T    L  L+ Q   ++  L   L     L  L L N +
Sbjct: 273 HNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTE 329

Query: 136 FSGSIPATWSQLSNLKHLDLSSNNLT 161
            +  +    S  + LK L   + ++ 
Sbjct: 330 LT-ELDV--SHNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 8/85 (9%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            + SL   ++  +      I KL  L  L    N+++ TL   L   T+L  L   +NK 
Sbjct: 43  TLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKL 97

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLT 161
           + ++    + L+ L +L+  +N LT
Sbjct: 98  T-NLDV--TPLTKLTYLNCDTNKLT 119

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
           S    +       + S  +L  L SL+  ++ ++  +      +T L  L   +N  + +
Sbjct: 22  SEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGI-EKLTGLTKLICTSNNIT-T 78

Query: 140 IPATWSQLSNLKHLDLSSNNLT 161
           +    SQ +NL +L   SN LT
Sbjct: 79  LD--LSQNTNLTYLACDSNKLT 98

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 9/87 (10%)

Query: 75  NGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANN 134
           N  +  L   +N  +      + +   L  L+   N L+  +   +  +T L   + + N
Sbjct: 190 NKLLNRLNCDTNNIT---KLDLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVN 243

Query: 135 KFSGSIPATWSQLSNLKHLDLSSNNLT 161
             +  +    S LS L  L     +L 
Sbjct: 244 PLT-ELDV--STLSKLTTLHCIQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            +  L   SN  +   +  +++   L  L    N L+  L   +  +T L  LN   NK 
Sbjct: 65  GLTKLICTSNNIT---TLDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKL 118

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLT 161
           +  +    SQ   L +L+ + N LT
Sbjct: 119 T-KLDV--SQNPLLTYLNCARNTLT 140

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 13/87 (14%), Positives = 23/87 (26%), Gaps = 8/87 (9%)

Query: 75  NGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANN 134
              + +L              I        +  Q           +   T L  L+    
Sbjct: 253 LSKLTTLHCIQTDLL-----EIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAA 307

Query: 135 KFSGSIPATWSQLSNLKHLDLSSNNLT 161
             +  +    SQ   L +L L++  LT
Sbjct: 308 GIT-ELDL--SQNPKLVYLYLNNTELT 331

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 102 LASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLT 161
            AS      ++  T       +  L SL+  N+  +  +     +L+ L  L  +SNN+T
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGI-EKLTGLTKLICTSNNIT 77

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 53.2 bits (128), Expect = 4e-08
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 3/104 (2%)

Query: 77  NVISLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
            +  L +G+     KI       L FL  LE+  +DL    P  L S+ ++  L L   +
Sbjct: 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209

Query: 136 FSGSIPA-TWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTG 178
               +        S+++ L+L   +L      +L +  T +   
Sbjct: 210 HI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 14/106 (13%)

Query: 69  SHVTCRNGNVISLTLGSNGFS---GKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTH 125
           + ++C    +   +  S   +     ++ ++       SL+L +N ++      L    +
Sbjct: 26  ASLSCDRNGICKGS--SGSLNSIPSGLTEAVK------SLDLSNNRITYISNSDLQRCVN 77

Query: 126 LQSLNLANNKFSGSIPA-TWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           LQ+L L +N  + +I   ++S L +L+HLDLS N L+  +    F 
Sbjct: 78  LQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFK 121

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 12/99 (12%)

Query: 81  LTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGT--------LPDFLGSMTHLQSLNL 131
           L L        +          +  LEL+D DL             + L      +++ +
Sbjct: 203 LILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261

Query: 132 ANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
            +      +    +Q+S L  L+ S N L   +P  +F 
Sbjct: 262 TDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFD 298

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 86  NGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPA-TW 144
           +  S   + S+ K     ++++ D  L   +   L  ++ L  L  + N+   S+P   +
Sbjct: 240 SELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIF 297

Query: 145 SQLSNLKHLDLSSNNLT 161
            +L++L+ + L +N   
Sbjct: 298 DRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 77  NVISLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
           N+ +L L SNG +  I     + L  L  L+L  N LS     +   ++ L  LNL  N 
Sbjct: 77  NLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP 135

Query: 136 FSGSIP--ATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           +  ++   + +S L+ L+ L + + +   +I  + F+
Sbjct: 136 YK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 16/111 (14%)

Query: 65  CFSWSHVTCRN----------GNVISLTLGSNGFSGKISP-SITKLKFLASLELQDNDLS 113
           C                     +  +L L        I   + + L  ++ + +  +   
Sbjct: 10  CHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTL 68

Query: 114 GTLPD--FLGSMTHLQSLNLANNKFSGSIPA-TWSQLSNLKHLDLSSNNLT 161
             L    F   ++ +  + + N +    I      +L  LK L + +  L 
Sbjct: 69  QQLESHSFYN-LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK 118

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 5/98 (5%)

Query: 77  NVISLTLGSNGFSGKISPSI-TKLKFLASLELQDN-DLSGTLPDFLGSMTHLQSLNLANN 134
           N+  + +  +    ++       L  +  +E+++  +L+   PD L  +  L+ L + N 
Sbjct: 56  NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT 115

Query: 135 KFSGSIPAT--WSQLSNLKHLDLSSNNLTGRIPMQLFS 170
                 P             L+++ N     IP+  F 
Sbjct: 116 GLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ 152

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 6/95 (6%)

Query: 80  SLTLGSNGFSGKISP-SITKL-KFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFS 137
            L +  N +   I   +   L     +L+L +N  + ++  +  + T L ++ L  NK+ 
Sbjct: 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYL 192

Query: 138 GSIPA-TWSQL-SNLKHLDLSSNNLTGRIPMQLFS 170
             I    +  + S    LD+S  ++T  +P +   
Sbjct: 193 TVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLE 226

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.3 bits (126), Expect = 8e-08
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 81  LTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFL-GSMTHLQSLNLANNKFSG 138
           L L  N     ++    + L  L  L   + +L+ +L +F  G +  L+ LN+A+N    
Sbjct: 81  LILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ- 137

Query: 139 SIPA--TWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           S      +S L+NL+HLDLSSN +   I      
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLR 170

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 9/95 (9%)

Query: 80  SLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPD--FLGSMTHLQSLNLANNKF 136
           +L L  N     +          L  L+L   ++  T+ D  +   ++HL +L L  N  
Sbjct: 32  NLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQS-LSHLSTLILTGNPI 88

Query: 137 SGSIPA-TWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
             S+    +S LS+L+ L     NL   +      
Sbjct: 89  Q-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIG 121

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 9/95 (9%)

Query: 81  LTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLP----DFLGSMTHLQ-SLNLANN 134
           L +  N       P   + L  L  L+L  N +  ++       L  M  L  SL+L+ N
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 135 KFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLF 169
             +  I     +   LK L L +N L   +P  +F
Sbjct: 188 PMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIF 220

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.4 bits (126), Expect = 8e-08
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 6/85 (7%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           ++ +L L S   +  ++P +  L  L  L L  N ++   P  L  +T+LQ L++ N + 
Sbjct: 108 SIKTLDLTSTQIT-DVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQV 163

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLT 161
           S  +    + LS L  L    N ++
Sbjct: 164 S-DLTPL-ANLSKLTTLKADDNKIS 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.4 bits (126), Expect = 9e-08
 Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 6/85 (7%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            +  L L  N     +S  I  L+ + +L+L    ++      L  +++LQ L L  N+ 
Sbjct: 86  KITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQI 141

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLT 161
           + +I    + L+NL++L + +  ++
Sbjct: 142 T-NISPL-AGLTNLQYLSIGNAQVS 164

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           N+  L L  N  +  ISP +  L  L  L + +  +S      L +++ L +L   +NK 
Sbjct: 130 NLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKI 185

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLT 161
           S  I    + L NL  + L +N ++
Sbjct: 186 S-DISP-LASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           N I +  G +  +   + +   L  + +L      ++    + +  + +L  L L +N+ 
Sbjct: 20  NAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQI 75

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLT 161
           +  +      L+ +  L+LS N L 
Sbjct: 76  T-DLAPL-KNLTKITELELSGNPLK 98

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 6/85 (7%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           N+  L++G+   S  ++P +  L  L +L+  DN +S   P  L S+ +L  ++L NN+ 
Sbjct: 152 NLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQI 207

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLT 161
           S  +    +  SNL  + L++  +T
Sbjct: 208 S-DVSP-LANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 91  KISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNL 150
            I P    L     +    ++++ T+      +  + +L+      + +I      L+NL
Sbjct: 11  VIFP-DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYLNNL 65

Query: 151 KHLDLSSNNLT 161
             L+L  N +T
Sbjct: 66  IGLELKDNQIT 76

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 3/82 (3%)

Query: 81  LTLGSNGFS-GKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
           L L +   + GKI     +   L  L L +  L       L  +  L+ L L+ N+  G 
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG 86

Query: 140 IPATWSQLSNLKHLDLSSNNLT 161
           +     +L NL HL+LS N L 
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           N+  L+L + G    +S  + KL  L  LEL +N + G L      + +L  LNL+ NK 
Sbjct: 50  NLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107

Query: 137 SG-SIPATWSQLSNLKHLDLSSNNLT 161
              S      +L  LK LDL +  +T
Sbjct: 108 KDISTLEPLKKLECLKSLDLFNCEVT 133

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 9/98 (9%)

Query: 77  NVISLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPD--FLGSMTHLQSLNLAN 133
            +  + L  N     I P   +  K L  ++L +N +S  L    F G +  L SL L  
Sbjct: 33  TITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQG-LRSLNSLVLYG 89

Query: 134 NKFSGSIPA-TWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           NK +  +P   +  L +L+ L L++N +   + +  F 
Sbjct: 90  NKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQ 125

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 98  KLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPA-TWSQLSNLKHLDLS 156
            L+ L SL L  N ++         +  LQ L L  NK +  +    +  L NL  L L 
Sbjct: 78  GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLY 136

Query: 157 SNNLTGRIPMQLFS 170
            N L   I    FS
Sbjct: 137 DNKLQ-TIAKGTFS 149

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 16/61 (26%), Positives = 27/61 (44%)

Query: 98  KLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSS 157
            L  L  L L  N ++    D    + +L  L+L +NK       T+S L  ++ + L+ 
Sbjct: 102 GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161

Query: 158 N 158
           N
Sbjct: 162 N 162

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 8/86 (9%)

Query: 80  SLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPD--FLGSMTHLQSLNLANNKF 136
            L L SN  S  +      +L  L  L L DN L  TLP   F   + +L++L + +NK 
Sbjct: 41  KLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKE-LKNLETLWVTDNKL 97

Query: 137 SGSIPA-TWSQLSNLKHLDLSSNNLT 161
             ++P   + QL NL  L L  N L 
Sbjct: 98  Q-ALPIGVFDQLVNLAELRLDRNQLK 122

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 9/93 (9%)

Query: 81  LTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPD--FLGSMTHLQSLNLANNKFS 137
           L L  N     + P +   L  L  L L  N+L  +LP   F   +T L+ L L NN+  
Sbjct: 114 LRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVF-DKLTSLKELRLYNNQLK 170

Query: 138 GSIPA-TWSQLSNLKHLDLSSNNLTGRIPMQLF 169
             +P   + +L+ LK L L +N L  R+P   F
Sbjct: 171 -RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAF 201

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 9e-06
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 104 SLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPA-TWSQLSNLKHLDLSSNNLTG 162
            L+LQ N LS         +T L+ L L +NK   ++PA  + +L NL+ L ++ N L  
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ- 98

Query: 163 RIPMQLFS 170
            +P+ +F 
Sbjct: 99  ALPIGVFD 106

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 261 FSCRELQLATDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREV 319
           F    + +   ++     +G+GGF  V     L D    A+KR+   +        QRE 
Sbjct: 19  FQGHMVIIDNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRI-LCHEQQDREEAQREA 77

Query: 320 HLISVAIHKNLLQLIGYCTTSSE 342
            +  +  H N+L+L+ YC     
Sbjct: 78  DMHRLFNHPNILRLVAYCLRERG 100

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 6/85 (7%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           N+  L L  N     +S  +  LK L SL L+ N +S    + L  +  L+SL L NNK 
Sbjct: 91  NLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKI 146

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLT 161
           +  I    S+L+ L  L L  N ++
Sbjct: 147 T-DITVL-SRLTKLDTLSLEDNQIS 169

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 6/85 (7%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
             I   L     +        +L  +  +   ++D+  ++   +  + ++  L L  NK 
Sbjct: 25  ETIKDNLKKKSVT-DAVT-QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKL 80

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLT 161
           +  I    + L NL  L L  N + 
Sbjct: 81  T-DIKP-LANLKNLGWLFLDENKVK 103

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 91  KISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNL 150
           +I              L+   ++  +      +  +  +   N+    S+      L N+
Sbjct: 16  QIFS-DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNV 70

Query: 151 KHLDLSSNNLT 161
             L L+ N LT
Sbjct: 71  TKLFLNGNKLT 81

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 278 IIGQGGFGKVYKGV-LSDNTKVAVKRLQD-YYSPGGEAAFQREVHLISVAIHKNLLQLIG 335
            IG+G F  VYKG+      +VA   LQD   +      F+ E  ++    H N+++   
Sbjct: 33  EIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYD 92

Query: 336 YCTTSSER 343
              ++ + 
Sbjct: 93  SWESTVKG 100

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 15/85 (17%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           N +   LG    +  +     +L  + +    ++++       +   T+L+ L+L++N+ 
Sbjct: 20  NAVKQNLGKQSVT-DLVS-QKELSGVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHNQI 75

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLT 161
           S  +      L+ L+ L ++ N L 
Sbjct: 76  S-DLSPL-KDLTKLEELSVNRNRLK 98

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.9 bits (117), Expect = 9e-07
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 13/88 (14%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTL---PDFLGSMTHLQSLNLAN 133
            +  L++  N         +  L  + S  L    L        D L  + +L+ L++ N
Sbjct: 86  KLEELSVNRN--------RLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRN 137

Query: 134 NKFSGSIPATWSQLSNLKHLDLSSNNLT 161
           NK   SI      LS L+ LDL  N +T
Sbjct: 138 NKLK-SIVML-GFLSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            +  L L +N         +  LK L  L +++N L  ++   LG ++ L+ L+L  N+ 
Sbjct: 107 CLSRLFLDNNELR-DTDS-LIHLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEI 162

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLT 161
           + +     ++L  +  +DL+     
Sbjct: 163 T-NTGG-LTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
           N+  L L  N  S  +SP +  L  L  L +  N L             L  L L NN+ 
Sbjct: 64  NLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKNLNG---IPSACLSRLFLDNNEL 118

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLT 161
                +    L NL+ L + +N L 
Sbjct: 119 R-DTDS-LIHLKNLEILSIRNNKLK 141

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 277 NIIGQGGFGKVYKGVLSDNTKVAVKRLQ-DYYSPGGEAAFQREVHLISVAIHKNL--LQL 333
             IG GG  KV++ +       A+K +  +        +++ E+  ++     +   ++L
Sbjct: 34  KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL 93

Query: 334 IGYCTTSSERILV 346
             Y  T     +V
Sbjct: 94  YDYEITDQYIYMV 106

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 77  NVISLTLGSNGFS-GKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
           +V  L L ++  + GK+     + + L  L   +  L+ ++ + L  +  L+ L L++N+
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNR 75

Query: 136 FSGSIPATWSQLSNLKHLDLSSNNLT 161
            SG +     +  NL HL+LS N + 
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
            +  L+  + G +  I+ ++ KL  L  LEL DN +SG L        +L  LNL+ NK 
Sbjct: 43  ELEFLSTINVGLT-SIA-NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

Query: 137 SG-SIPATWSQLSNLKHLDLSSNNLT 161
              S      +L NLK LDL +  +T
Sbjct: 101 KDLSTIEPLKKLENLKSLDLFNCEVT 126

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.1 bits (115), Expect = 8e-07
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 5/85 (5%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
               L L +N    KIS  ++ ++ L  L L  N +   + +       L+ L ++ N+ 
Sbjct: 49  ACKHLALSTNNIE-KISS-LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQI 105

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLT 161
           + S+     +L NL+ L +S+N +T
Sbjct: 106 A-SLSG-IEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 88  FSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQL 147
           F  + S   T+ + +  L      +   +   L ++   + L L+ N     I ++ S +
Sbjct: 14  FEERKSVVATEAEKV-ELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KI-SSLSGM 69

Query: 148 SNLKHLDLSSNNLT 161
            NL+ L L  N + 
Sbjct: 70  ENLRILSLGRNLIK 83

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF 136
               L L        I      L    +++  DN++   L D    +  L++L + NN+ 
Sbjct: 20  RDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRI 76

Query: 137 SGSIPATWSQLSNLKHLDLSSNNLT 161
                     L +L  L L++N+L 
Sbjct: 77  CRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 11/72 (15%)

Query: 96  ITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWS------QLSN 149
              L+ L +L + +N +         ++  L  L L NN                  L +
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-----ELGDLDPLASLKS 114

Query: 150 LKHLDLSSNNLT 161
           L +L +  N +T
Sbjct: 115 LTYLCILRNPVT 126

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 49.3 bits (118), Expect = 9e-07
 Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 277 NIIGQGGFGKVYKGVLSDNTKVAVKRLQ-DYYSPGGEAAFQREVHLISVAIHKNL--LQL 333
             IG GG  KV++ +       A+K +  +        +++ E+  ++     +   ++L
Sbjct: 15  KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL 74

Query: 334 IGYCTTSSERILV 346
             Y  T     +V
Sbjct: 75  YDYEITDQYIYMV 87

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query: 77  NVISLTLGSNGFSGKISPSIT--KLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANN 134
               L L +N F+  +  +    KL  L  +   +N ++          + +  + L +N
Sbjct: 33  YTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 135 KFSGSIPA-TWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           +   ++    +  L +LK L L SN +T  +    F 
Sbjct: 92  RLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFI 126

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 5/96 (5%)

Query: 77  NVISLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
            +  +   +N  +  I          +  + L  N L          +  L++L L +N+
Sbjct: 58  QLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR 116

Query: 136 FSGSIPA-TWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
            +  +   ++  LS+++ L L  N +T  +    F 
Sbjct: 117 IT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFD 150

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 98  KLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPA-TWSQLSNLKHLDLS 156
            L+ L +L L+ N ++    D    ++ ++ L+L +N+ + ++    +  L +L  L+L 
Sbjct: 103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLL 161

Query: 157 SN 158
           +N
Sbjct: 162 AN 163

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 8/76 (10%)

Query: 279 IGQGGFGKVYKGV-LSDNTKVAVK-----RLQDYYSPGGEAAFQREVHLISVAIHK--NL 330
           +G GGFG VY G+ +SDN  VA+K     R+ D+           EV L+         +
Sbjct: 51  LGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGV 110

Query: 331 LQLIGYCTTSSERILV 346
           ++L+ +       +L+
Sbjct: 111 IRLLDWFERPDSFVLI 126

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 277 NIIGQGGFGKVYKGVLSDNTKVAVKRLQ-DYYSPGGEAAFQREVHLISVAIHKNL--LQL 333
             IG GG  KV++ +       A+K +  +        +++ E+  ++     +   ++L
Sbjct: 62  KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL 121

Query: 334 IGYCTTSSERILV 346
             Y  T     +V
Sbjct: 122 YDYEITDQYIYMV 134

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 15/119 (12%), Positives = 40/119 (33%), Gaps = 17/119 (14%)

Query: 264 RELQLATDNFSESNIIGQGGFGKVYKGVLSDNT------KVAVK-----RLQDYYSPGGE 312
            E QL +      +++G+G F +VY+    D        K  +K        ++Y     
Sbjct: 58  TEFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFY----- 112

Query: 313 AAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKIIS 371
               + +  +  ++    ++        +  +LV       ++   + +      K++ 
Sbjct: 113 -IGTQLMERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMP 170

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 4/97 (4%)

Query: 77  NVISLTLGSNGFSGKISPSI-TKLKFLASLELQD-NDLSGTLPDFLGSMTHLQSLNLANN 134
           ++  + +  N     I   + + L  L  + ++  N+L    P+   ++ +LQ L ++N 
Sbjct: 55  DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 135 KFSGSIPA-TWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
                +P            LD+  N     I    F 
Sbjct: 115 GIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 1/70 (1%)

Query: 102 LASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPA-TWSQLSNLKHLDLSSNNL 160
              L      L             L+ + ++ N     I A  +S L  L  + +   N 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 161 TGRIPMQLFS 170
              I  + F 
Sbjct: 92  LLYINPEAFQ 101

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 7/98 (7%)

Query: 77  NVISLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPD--FLGSMTHLQSLNLAN 133
           N I L          I     +    L  +E+  ND+   +    F   +  L  + +  
Sbjct: 31  NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN-LPKLHEIRIEK 88

Query: 134 NKFSGSIPA-TWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
                 I    +  L NL++L +S+  +   +P     
Sbjct: 89  ANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKI 125

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 5/101 (4%)

Query: 73  CRNGNVISLTLGSNGFSGKISP-SITKLKF-LASLELQDNDLSGTLPDFLGSMTHLQSLN 130
             +   + L +  N     I   S   L F    L L  N +   + +   + T L  LN
Sbjct: 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELN 183

Query: 131 L-ANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           L  NN         +   S    LD+S   +   +P     
Sbjct: 184 LSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLE 223

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 10/78 (12%)

Query: 279 IGQGGFGKVYKGV-LSDNTKVAVK-----RLQDYYSPGGEAAFQREVH----LISVAIHK 328
           +G+GGFG V+ G  L+D  +VA+K     R+  +           EV     + +   H 
Sbjct: 39  LGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHP 98

Query: 329 NLLQLIGYCTTSSERILV 346
            +++L+ +  T    +LV
Sbjct: 99  GVIRLLDWFETQEGFMLV 116

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 8/107 (7%)

Query: 67  SWSHVTCRNGNVISLTLGSNGF----SGKISPSITKLKFLASLELQDNDLSGTLPDFLGS 122
           ++  V     N+ SL           S     +    + +  L L  N L+G++   L  
Sbjct: 391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP 450

Query: 123 MTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLF 169
              ++ L+L NN+   SIP   + L  L+ L+++SN L   +P  +F
Sbjct: 451 --KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVF 493

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.6 bits (113), Expect = 5e-06
 Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 24/115 (20%)

Query: 63  SPCFSWSHVTCRN-----------GNVISLTLGSNGFSGKISPS-ITKLKFLASLELQDN 110
                 S V   N               +L+L  N  S ++    I+ L  L  L L  N
Sbjct: 28  FSNELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHN 86

Query: 111 DLSGTLP----DFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLT 161
            +  +L      F      L+ L++++N+   +I      +++L+HLDLS N+  
Sbjct: 87  RIR-SLDFHVFLFN---QDLEYLDVSHNRLQ-NISCCP--MASLRHLDLSFNDFD 134

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 21/85 (24%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 76  GNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK 135
            +++ L L SN  +G +   +     +  L+L +N +  ++P  +  +  LQ LN+A+N+
Sbjct: 428 ESILVLNLSSNMLTGSVFRCLPPK--VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQ 484

Query: 136 FSGSIP-ATWSQLSNLKHLDLSSNN 159
              S+P   + +L++L+++ L  N 
Sbjct: 485 LK-SVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 16/79 (20%), Positives = 25/79 (31%)

Query: 83  LGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPA 142
           + +  F        +    +    L  +D          S +    LN   N F+ S+  
Sbjct: 312 VKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ 371

Query: 143 TWSQLSNLKHLDLSSNNLT 161
             S L  L+ L L  N L 
Sbjct: 372 GCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 98  KLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIP--ATWSQLSNLKHLDL 155
             + L  L++  N L   +      M  L+ L+L+ N F   +P    +  L+ L  L L
Sbjct: 98  FNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGL 153

Query: 156 SSNNLTGRIPMQLFS 170
           S+     ++ +   +
Sbjct: 154 SAAKFR-QLDLLPVA 167

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.2 bits (94), Expect = 9e-04
 Identities = 28/213 (13%), Positives = 69/213 (32%), Gaps = 23/213 (10%)

Query: 44  LKALNDTHGQFTDWNDHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKL---K 100
           + AL          ND       ++     R   ++++TL     + K S  + +    +
Sbjct: 217 VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276

Query: 101 FLASLELQDNDLSG-----TLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDL 155
            +  L + +  ++             ++  L   ++ N  F  S  A +S  + +    L
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336

Query: 156 SSNNLTGRIPMQLFSVATFNFTGTHLICGSSLEQPCMSRPSPPVSTSRTKLRIVV----- 210
           S ++    I M      +   + T L    +  Q   +       ++  +L+ ++     
Sbjct: 337 SISDTP-FIHMVCPPSPS---SFTFL----NFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388

Query: 211 -ASASCGAFVLLSLGALFACRYQKLRKLKHDVF 242
             +    A +  ++ +L       L  L    +
Sbjct: 389 LKNFFKVALMTKNMSSLE-TLDVSLNSLNSHAY 420

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 264 RELQLATDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVH-L 321
           + ++L         ++ +GGF  VY+   +    + A+KRL          A  +EV  +
Sbjct: 21  QTVELGELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRL-LSNEEEKNRAIIQEVCFM 79

Query: 322 ISVAIHKNLLQLIGYCTTSSERI 344
             ++ H N++Q     +   E  
Sbjct: 80  KKLSGHPNIVQFCSAASIGKEES 102

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 15/89 (16%)

Query: 270 TDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKR-LQDYYSPGGEAAFQ-REVHLISVAIH 327
              ++   +IG G FG V++  L ++ +VA+K+ LQD         F+ RE+ ++ +  H
Sbjct: 39  EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQD-------KRFKNRELQIMRIVKH 91

Query: 328 KNLLQLIGYCTTSSERI------LVYPFM 350
            N++ L  +  ++ ++       LV  ++
Sbjct: 92  PNVVDLKAFFYSNGDKKDEVFLNLVLEYV 120

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 104 SLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPA-TWSQLSNLKHLDLSSNNLTG 162
            L L  N  +  +P  L +  HL  ++L+NN+ S ++   ++S ++ L  L LS N L  
Sbjct: 35  ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR- 91

Query: 163 RIPMQLF 169
            IP + F
Sbjct: 92  CIPPRTF 98

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 5/86 (5%)

Query: 77  NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFL-GSMTHLQSLNLANNK 135
           +V  L L  N F+  +   ++  K L  ++L +N +S TL +    +MT L +L L+ N+
Sbjct: 32  DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNR 89

Query: 136 FSGSIPA-TWSQLSNLKHLDLSSNNL 160
               IP  T+  L +L+ L L  N++
Sbjct: 90  LR-CIPPRTFDGLKSLRLLSLHGNDI 114

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 80  SLTLGSNGFSGKISPSIT--KLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFS 137
            L L  N    +IS      +L  L  LEL+ N L+G  P+     +H+Q L L  NK  
Sbjct: 33  ELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 138 GSIPA-TWSQLSNLKHLDLSSNNLTGRIP 165
             I    +  L  LK L+L  N ++  + 
Sbjct: 92  -EISNKMFLGLHQLKTLNLYDNQIS-CVM 118

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 104 SLELQDNDLSGTLPD-FLGSMTHLQSLNLANNKFSGSIPA-TWSQLSNLKHLDLSSNNLT 161
            L L DN+L     D   G + HL  L L  N+ +  I    +   S+++ L L  N + 
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK 91

Query: 162 GRIPMQLF 169
             I  ++F
Sbjct: 92  -EISNKMF 98

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 47.1 bits (112), Expect = 6e-06
 Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 7/78 (8%)

Query: 271 DNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQ-DYYSPGGEAAFQREVH-LISVAIHK 328
           +      I+G G  G V          VAVKR+  D+           E+  L     H 
Sbjct: 15  NLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCD-----IALMEIKLLTESDDHP 69

Query: 329 NLLQLIGYCTTSSERILV 346
           N+++     TT     + 
Sbjct: 70  NVIRYYCSETTDRFLYIA 87

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 270 TDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHK 328
             +F E  ++GQG FG+V K     D+   A+K+++  ++    +    EV L++   H+
Sbjct: 5   ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIR--HTEEKLSTILSEVMLLASLNHQ 62

Query: 329 NLLQLIG 335
            +++   
Sbjct: 63  YVVRYYA 69

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 46.8 bits (111), Expect = 6e-06
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 1/95 (1%)

Query: 271 DNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKN 329
            +F     +G+GGFG V++     D+   A+KR++            REV  ++   H  
Sbjct: 6   TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPG 65

Query: 330 LLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHK 364
           +++       +          +             
Sbjct: 66  IVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLS 100

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
            L L S G +     +   L  L  L L  N L          +T L +L LANN+ + S
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-S 97

Query: 140 IPA-TWSQLSNLKHLDLSSNNLTGRIPMQLF 169
           +P   +  L+ L  L L  N L   +P  +F
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVF 127

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 5/91 (5%)

Query: 81  LTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
           L L  N     +S  +   L  L +L L +N L+         +T L  L L  N+   S
Sbjct: 64  LNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-S 121

Query: 140 IPA-TWSQLSNLKHLDLSSNNLTGRIPMQLF 169
           +P+  + +L+ LK L L++N L   IP   F
Sbjct: 122 LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAF 151

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 5/91 (5%)

Query: 81  LTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
           L L +N  +  +   +   L  L  L L  N L          +T L+ L L  N+   S
Sbjct: 88  LGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-S 145

Query: 140 IPA-TWSQLSNLKHLDLSSNNLTGRIPMQLF 169
           IPA  + +L+NL+ L LS+N L   +P   F
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAF 175

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 8/96 (8%), Positives = 21/96 (21%), Gaps = 7/96 (7%)

Query: 278 IIGQGGFGKVYKGV-LSDNTKVAVK--RLQDYYSPGGEAAFQREVHLISVAIHKNLLQLI 334
            +  G    V+    +      A+K   +    S              +  + ++  +  
Sbjct: 69  PLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEAR 128

Query: 335 GYC----TTSSERILVYPFMQNLSVAYRLRVSHKIY 366
                   + +  +   P    LS            
Sbjct: 129 DRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYL 164

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.3 bits (106), Expect = 2e-05
 Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 14/114 (12%)

Query: 62  VSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKF--LASLEL---QDNDLSGTL 116
           +    + S       N+ SL + S G    +   I       L  L L    ++      
Sbjct: 179 IKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD 238

Query: 117 PDFL------GSMTHLQSLNLANNKFSGSIP---ATWSQLSNLKHLDLSSNNLT 161
            +            +L+ L + + +    +         L  L+ +D+S+  LT
Sbjct: 239 MNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.9 bits (105), Expect = 3e-05
 Identities = 11/102 (10%), Positives = 38/102 (37%), Gaps = 14/102 (13%)

Query: 81  LTLGSNGFSGKISPSI-------TKLKFLASLELQDNDLSGTLPDFLGS---MTHLQSLN 130
           L +G   +      ++        +   L  L + D +    + +       +  L++++
Sbjct: 226 LYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMD 285

Query: 131 LANNKFSGS----IPATWSQLSNLKHLDLSSNNLTGRIPMQL 168
           ++    +      +     ++ +LK +++  N L+  +  +L
Sbjct: 286 ISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 80  SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS 139
            L L +N      +    +L  L  L L  N L          +T L  LNL+ N+   S
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-S 90

Query: 140 IPA-TWSQLSNLKHLDLSSNNLTGRIPMQLF 169
           +P   + +L+ LK L L++N L   +P  +F
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQ-SLPDGVF 120

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 22/118 (18%)

Query: 270 TDNFSESNIIGQGGFGKVYKGVLSD-NTKVAVKR-LQDYYSPGGEAAFQ-REVHLISVAI 326
             +++++ +IG G FG VY+  L D    VA+K+ LQD         F+ RE+ ++    
Sbjct: 53  EVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD-------KRFKNRELQIMRKLD 105

Query: 327 HKNLLQLIGYCTTSSERI------LVYPFM-QNLSVAYRLRVSHKIYTKIISLSSLHC 377
           H N+++L  +  +S E+       LV  ++ + +      RV+        +L  ++ 
Sbjct: 106 HCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVY-----RVARHYSRAKQTLPVIYV 158

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 82  TLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIP 141
            + +N    K    I  L  +  L L  N L   +      +T+L  L L  N+   S+P
Sbjct: 45  QIIANNSDIKSVQGIQYLPNVRYLALGGNKLH-DISAL-KELTNLTYLILTGNQLQ-SLP 101

Query: 142 AT-WSQLSNLKHLDLSSNNLT 161
              + +L+NLK L L  N L 
Sbjct: 102 NGVFDKLTNLKELVLVENQLQ 122

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 5/92 (5%)

Query: 80  SLTLGSNGFSGKISPSI-TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSG 138
            L L  N     +   +  KL  L  L L +N L          +T+L  LNLA+N+   
Sbjct: 89  YLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ- 146

Query: 139 SIPA-TWSQLSNLKHLDLSSNNLTGRIPMQLF 169
           S+P   + +L+NL  LDLS N L   +P  +F
Sbjct: 147 SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVF 177

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 278 IIGQGGFGKVYKGVLSDN-TKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGY 336
           ++G+G +G VY G    N  ++A+K + +  S   +     E+ L     HKN++Q +G 
Sbjct: 29  VLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQ-PLHEEIALHKHLKHKNIVQYLGS 87

Query: 337 CTTSSERILVYPFM 350
            + +     +  FM
Sbjct: 88  FSENGF---IKIFM 98

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 44.5 bits (104), Expect = 3e-05
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 268 LATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVK--RLQDYYSPGGEAAFQREVHLISVA 325
           L T+       IG+G FG+V++ +  D+T VA+K   ++      G      E  L  + 
Sbjct: 17  LPTEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEII 75

Query: 326 IHKNLLQLIGYCTTSSERI 344
           I K L  L G     +E  
Sbjct: 76  ISKELSLLSGEVCNRTEGF 94

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 5/76 (6%)

Query: 272 NFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVH-LISVAIHKNL 330
           +F   +++G G  G +    + DN  VAVKR+     P   +   REV  L     H N+
Sbjct: 25  SFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRI----LPECFSFADREVQLLRESDEHPNV 80

Query: 331 LQLIGYCTTSSERILV 346
           ++          + + 
Sbjct: 81  IRYFCTEKDRQFQYIA 96

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 271 DNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRL-QDYYSPGGEAAFQREVH-LISVAIH 327
            +F   + +G G +G+V+K     D    AVKR    +  P   A    EV     V  H
Sbjct: 57  QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQH 116

Query: 328 KNLLQLIG 335
              ++L  
Sbjct: 117 PCCVRLEQ 124

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 271 DNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKN 329
            +F     +G+GGFG V++     D+   A+KR++            REV  ++   H  
Sbjct: 5   TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPG 64

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 271 DNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKN 329
             +  S+I+GQG    V++G         A+K   +           RE  ++    HKN
Sbjct: 9   HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKN 68

Query: 330 LLQLI 334
           +++L 
Sbjct: 69  IVKLF 73

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 270 TDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQ-DYYSPGGEAAFQREVHLISVAI- 326
           T  F E   IG G FG V+K V   D    A+KR +        E    REV+  +V   
Sbjct: 10  TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQ 69

Query: 327 HKNLLQLIG 335
           H ++++   
Sbjct: 70  HSHVVRYFS 78

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 14/106 (13%)

Query: 248 EDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVK--RLQ 304
           ED+  V LT+  +    E +      +    +G+G FG+V++        + AVK  RL+
Sbjct: 35  EDNEGVLLTEKLKPVDYEYREEVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLE 94

Query: 305 DYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM 350
                        E+   +      ++ L G          V  FM
Sbjct: 95  V--------FRVEELVACAGLSSPRIVPLYGAVREGPW---VNIFM 129

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 44.3 bits (104), Expect = 5e-05
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 270 TDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHK 328
              +     +G GGFG V + +      +VA+K+ +   SP     +  E+ ++    H 
Sbjct: 13  CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHP 72

Query: 329 NLLQL 333
           N++  
Sbjct: 73  NVVSA 77

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 5e-05
 Identities = 26/169 (15%), Positives = 47/169 (27%), Gaps = 64/169 (37%)

Query: 226 LFACRYQKLRKLKHDVFFDVAGEDDCKVSLTQLRRFSCRELQLATDNFSESNII--GQGG 283
               R Q   KL+               +L +LR                 N++  G  G
Sbjct: 129 YNVSRLQPYLKLRQ--------------ALLELR--------------PAKNVLIDGVLG 160

Query: 284 FGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSER 343
            GK         T VA+     Y     +     ++  +++            C +    
Sbjct: 161 SGK---------TWVALDVCLSY---KVQCKMDFKIFWLNL----------KNCNSPETV 198

Query: 344 I-----LVYPFMQNL------SVAYRLRV-SHKIYTKIISLSSLHCFSL 380
           +     L+Y    N       S   +LR+ S +   + +  S  +   L
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 5e-05
 Identities = 52/395 (13%), Positives = 103/395 (26%), Gaps = 124/395 (31%)

Query: 28  HSSREPDVEGEALIEVLKALNDT-----HGQF----TDW------NDHFVSPCFS----W 68
           + SR        L + L  L         G      T W        + V         W
Sbjct: 130 NVSRLQPYL--KLRQALLELRPAKNVLIDGVLGSGKT-WVALDVCLSYKVQCKMDFKIFW 186

Query: 69  SHV-TCRNGNVISLTLGSNGFSGKISPSITKL-KFLASLELQDNDLSGTLPDFLGSMTHL 126
            ++  C +   +   L       +I P+ T      ++++L+ + +   L   L S  + 
Sbjct: 187 LNLKNCNSPETVLEML--QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 127 QSL----NLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHLI 182
             L    N+ N K        W         +LS   L          + T     T  +
Sbjct: 245 NCLLVLLNVQNAK-------AW------NAFNLSCKIL----------LTTRFKQVTDFL 281

Query: 183 CGSSLEQPCMSRPSPPVSTSRTKLRIVVASASCGAFVL-----------LSL-GAL---F 227
             ++     +   S  ++       +++    C    L           LS+        
Sbjct: 282 SAATTTHISLDHHSMTLTPDEV-KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 228 ACRYQKLRKLKHDVFFDVAGEDDCKVSLTQLRRFSCRELQLATDNFSESNIIGQGGFGKV 287
              +   + +  D    +      + SL  L     R++                     
Sbjct: 341 LATWDNWKHVNCDKLTTII-----ESSLNVLEPAEYRKM--------------------- 374

Query: 288 YK--GVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERIL 345
           +    V   +  +    L   +    +     +V ++   +HK  L          E+  
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIK----SDVMVVVNKLHKYSL---------VEK-- 419

Query: 346 VYPFMQNLSVAYRLRVSHKIY----TKIISLSSLH 376
                Q       +     IY     K+ +  +LH
Sbjct: 420 -----QPKESTISI---PSIYLELKVKLENEYALH 446

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 15/103 (14%)

Query: 74  RNGNVISLTLGSN-----GFSGKISPSITKLKFLASLELQDNDLSGT----LPDFLGSMT 124
            +  + ++ +  N     G    +   +   + L  L+LQDN  +      L   L S  
Sbjct: 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244

Query: 125 HLQSLNLANNKFSG----SIPATWSQLSN--LKHLDLSSNNLT 161
           +L+ L L +   S     ++   +S+L N  L+ L L  N + 
Sbjct: 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 13/101 (12%)

Query: 74  RNGNVISLTLGSNGFSGK----ISPSITKLKFLASLELQDNDL-----SGTLPDFLGSMT 124
               + S+  G N          + +    + L ++++  N +        L + L    
Sbjct: 157 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ 216

Query: 125 HLQSLNLANNKFSG----SIPATWSQLSNLKHLDLSSNNLT 161
            L+ L+L +N F+     ++        NL+ L L+   L+
Sbjct: 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 19/115 (16%), Positives = 31/115 (26%), Gaps = 27/115 (23%)

Query: 74  RNGNVISLTLGSNGFSGK----------ISPSITKLKFLASLELQDNDLSGT----LPDF 119
              ++                       +  ++ K   L ++ L DN    T    L DF
Sbjct: 58  SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF 117

Query: 120 LGSMTHLQSLNLANNKFS-------------GSIPATWSQLSNLKHLDLSSNNLT 161
           L   T L+ L L NN                 ++         L+ +    N L 
Sbjct: 118 LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.8 bits (101), Expect = 8e-05
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%)

Query: 98  KLKFLASLELQDNDLSGTLPD--FLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDL 155
            L  L  L+L  N L+  LP   F   + HL+ L +  NK +  +P    +L++L HL L
Sbjct: 86  SLTQLTVLDLGTNQLT-VLPSAVF-DRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL 142

Query: 156 SSNNLTGRIPMQLF 169
             N L   IP   F
Sbjct: 143 DQNQLK-SIPHGAF 155

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 104 SLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPA-TWSQLSNLKHLDLSSNNLT 161
            L L DN ++   P    S+ +L+ L L +N+   ++P   +  L+ L  LDL +N LT
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 9/74 (12%)

Query: 279 IGQGGFGKVYKGV-LSDNTKVAVK-----RLQDYYSPGGEAAFQREVHLISVAIHKNLLQ 332
           +G+GGF K ++          A K      L     P        E+ +     H++++ 
Sbjct: 49  LGKGGFAKCFEISDADTKEVFAGKIVPKSLLL---KPHQREKMSMEISIHRSLAHQHVVG 105

Query: 333 LIGYCTTSSERILV 346
             G+   +    +V
Sbjct: 106 FHGFFEDNDFVFVV 119

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 271 DNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKN 329
             +  S+I+GQG    V++G         A+K   +           RE  ++    HKN
Sbjct: 9   HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKN 68

Query: 330 LLQLI 334
           +++L 
Sbjct: 69  IVKLF 73

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 42.9 bits (102), Expect = 9e-05
 Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 17/103 (16%)

Query: 261 FSCRELQLATDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQ--- 316
                   AT  +     IG G +G VYK         VA+K ++     GG        
Sbjct: 3   LGSM----ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPIST 58

Query: 317 -REVHL---ISVAIHKNLLQLIGYCTTSSERI-----LVYPFM 350
            REV L   +    H N+++L+  C TS         LV+  +
Sbjct: 59  VREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHV 101

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 270 TDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVK-----RLQDYYSPGGEAAFQREVHLIS 323
            D++     +G G F  V K        + A K     RL            +REV+++ 
Sbjct: 4   EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILR 63

Query: 324 VAIHKNLLQLIGYCTTSSERILV 346
              H N++ L       ++ +L+
Sbjct: 64  EIRHPNIITLHDIFENKTDVVLI 86

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 8/61 (13%)

Query: 279 IGQGGFGKVYKGV-LSDNTKVAVK-----RLQDYYSPGGEAAFQREVHLISVAIHKNLLQ 332
           +G+G +GKV + +      + AVK     +L+    P GEA  ++E+ L+    HKN++Q
Sbjct: 13  LGEGSYGKVKEVLDSETLCRRAVKILKKKKLRR--IPNGEANVKKEIQLLRRLRHKNVIQ 70

Query: 333 L 333
           L
Sbjct: 71  L 71

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 9/74 (12%)

Query: 279 IGQGGFGKVYKGV-LSDNTKVAVK-----RLQDYYSPGGEAAFQREVHLISVAIHKNLLQ 332
           +G+GGF K ++          A K      L     P        E+ +     H++++ 
Sbjct: 23  LGKGGFAKCFEISDADTKEVFAGKIVPKSLLL---KPHQREKMSMEISIHRSLAHQHVVG 79

Query: 333 LIGYCTTSSERILV 346
             G+   +    +V
Sbjct: 80  FHGFFEDNDFVFVV 93

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 18/97 (18%), Positives = 42/97 (43%), Gaps = 6/97 (6%)

Query: 259 RRFSCRELQLATDNFSE----SNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEA 313
           +++  + +++  D+  +       +G G FG V++    +     A K +        + 
Sbjct: 141 KQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFV-MTPHESDKE 199

Query: 314 AFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM 350
             ++E+  +SV  H  L+ L       +E +++Y FM
Sbjct: 200 TVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFM 236

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 14/93 (15%), Positives = 38/93 (40%), Gaps = 6/93 (6%)

Query: 259 RRFSCRELQLATDNFSE----SNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEA 313
           +++  + +++   +  +       +G G FG V++ V  +       K + +   P  + 
Sbjct: 35  KKYVPQPVEVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFI-NTPYPLDKY 93

Query: 314 AFQREVHLISVAIHKNLLQLIGYCTTSSERILV 346
             + E+ +++   H  L+ L        E +L+
Sbjct: 94  TVKNEISIMNQLHHPKLINLHDAFEDKYEMVLI 126

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 13/99 (13%)

Query: 75  NGNVISLTLGSNGFSGK----ISPSITKLKFLASLELQDNDLSGT-----LPDFLGSMTH 125
           +  +  L+L +   +G     +S ++  L  L  L L DN L            L     
Sbjct: 84  SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143

Query: 126 LQSLNLANNKFS----GSIPATWSQLSNLKHLDLSSNNL 160
           L+ L L     S      + +      + K L +S+N++
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 13/100 (13%)

Query: 75  NGNVISLTLGSNGFSGK----ISPSITKLKFLASLELQDNDLSG----TLPDFLGSM-TH 125
                 + L   G +      IS ++     LA L L+ N+L       +   L +    
Sbjct: 27  LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 86

Query: 126 LQSLNLANNKFS----GSIPATWSQLSNLKHLDLSSNNLT 161
           +Q L+L N   +    G + +T   L  L+ L LS N L 
Sbjct: 87  IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 13/95 (13%)

Query: 80  SLTLGSNGFSGK----ISPSITKLKFLASLELQDNDLSGT----LPDFLGSMT-HLQSLN 130
            L L     S      ++  +        L + +ND++      L   L      L++L 
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205

Query: 131 LANNKFS----GSIPATWSQLSNLKHLDLSSNNLT 161
           L +   +      +    +  ++L+ L L SN L 
Sbjct: 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 26/125 (20%)

Query: 270 TDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEA-AFQ---------REV 319
              ++    I  G +G V  GV S+   VA+KR+ +  S G                RE+
Sbjct: 21  QSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREI 80

Query: 320 HLISVAIHKNLLQLIGYCTTSSERI-----LVYPFMQ-NLSVAYRLRVSHK-IYTKIISL 372
            L++   H N+L L        E       LV   M+ +L          + I+ + I +
Sbjct: 81  RLLNHFHHPNILGLRDIFVHFEEPAMHKLYLVTELMRTDL---------AQVIHDQRIVI 131

Query: 373 SSLHC 377
           S  H 
Sbjct: 132 SPQHI 136

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 9/86 (10%)

Query: 270 TDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVK-------RLQDYYSPGGEAAFQREVH- 320
              +   ++IG+G    V + V  +   + AVK       RL          A +RE H 
Sbjct: 93  YQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHI 152

Query: 321 LISVAIHKNLLQLIGYCTTSSERILV 346
           L  VA H +++ LI    +SS   LV
Sbjct: 153 LRQVAGHPHIITLIDSYESSSFMFLV 178

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 6/83 (7%)

Query: 270 TDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVK-----RLQDYYSPGGEAAFQREVHLIS 323
            D +     +G G F  V K    S   + A K     R +           +REV ++ 
Sbjct: 10  DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILK 69

Query: 324 VAIHKNLLQLIGYCTTSSERILV 346
              H N++ L       ++ IL+
Sbjct: 70  EIQHPNVITLHEVYENKTDVILI 92

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 270 TDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVK-----RLQDYYSPGGEAAFQREVHLIS 323
            D +     +G G F  V K    S   + A K     + +           +REV ++ 
Sbjct: 11  EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILR 70

Query: 324 VAIHKNLLQLIGYCTTSSERILV 346
             +H N++ L       ++ +L+
Sbjct: 71  QVLHPNIITLHDVYENRTDVVLI 93

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 17/84 (20%)

Query: 279 IGQGGFGKVYKGVLSDNTKVAVK----------------RLQDYYSPGGEAAFQREVHLI 322
           + QG F K+      DN   A+K                             F+ E+ +I
Sbjct: 39  LNQGKFNKIILCE-KDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQII 97

Query: 323 SVAIHKNLLQLIGYCTTSSERILV 346
           +   ++  L   G  T   E  ++
Sbjct: 98  TDIKNEYCLTCEGIITNYDEVYII 121

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 271 DNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKN 329
           D++    +IG G    V          KVA+KR+             +E+  +S   H N
Sbjct: 15  DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPN 74

Query: 330 LLQLIG 335
           ++    
Sbjct: 75  IVSYYT 80

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 5/82 (6%)

Query: 270 TDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVK----RLQDYYSPGGEAAFQREVHLISV 324
              +     IGQG +G V   +        A+K          +P      + EV L+  
Sbjct: 25  QKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKK 84

Query: 325 AIHKNLLQLIGYCTTSSERILV 346
             H N+ +L           LV
Sbjct: 85  LHHPNIARLYEVYEDEQYICLV 106

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 270 TDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVK-----RLQDYYSPGGEAAFQREVHLIS 323
            D +     +G G F  V K    S   + A K     + +           +REV ++ 
Sbjct: 11  EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILR 70

Query: 324 VAIHKNLLQLIGYCTTSSERILV 346
             +H N++ L       ++ +L+
Sbjct: 71  QVLHHNVITLHDVYENRTDVVLI 93

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 9/74 (12%)

Query: 279 IGQGGFGKVYKGV-LSDNTKVAVK-----RLQDYYSPGGEAAFQREVHLISVAIHKNLLQ 332
           +G+G F  VY+   +    +VA+K      +      G     Q EV +     H ++L+
Sbjct: 19  LGKGSFAGVYRAESIHTGLEVAIKMIDKKAMY---KAGMVQRVQNEVKIHCQLKHPSILE 75

Query: 333 LIGYCTTSSERILV 346
           L  Y   S+   LV
Sbjct: 76  LYNYFEDSNYVYLV 89

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 10/87 (11%)

Query: 270 TDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVK--------RLQDYYSPGGEAAFQREVH 320
            +N+    I+G+G    V + +      + AVK                    A  +EV 
Sbjct: 16  YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVD 75

Query: 321 -LISVAIHKNLLQLIGYCTTSSERILV 346
            L  V+ H N++QL     T++   LV
Sbjct: 76  ILRKVSGHPNIIQLKDTYETNTFFFLV 102

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 270 TDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGE--AAFQREVHLISVAI 326
              FS+   IG G FG VY    + ++  VA+K++        E      +EV  +    
Sbjct: 53  EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLR 112

Query: 327 HKNLLQLIG 335
           H N +Q  G
Sbjct: 113 HPNTIQYRG 121

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 15/78 (19%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 270 TDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHK 328
            + +  +  +G+G FG V++ V  S       K ++       +   ++E+ ++++A H+
Sbjct: 4   YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVK--VKGTDQVLVKKEISILNIARHR 61

Query: 329 NLLQLIGYCTTSSERILV 346
           N+L L     +  E +++
Sbjct: 62  NILHLHESFESMEELVMI 79

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 271 DNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKN 329
            +F E  +IG GGFG+V+K     D     +KR+            +REV  ++   H N
Sbjct: 11  MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRV-----KYNNEKAEREVKALAKLDHVN 65

Query: 330 LLQLIGY 336
           ++   G 
Sbjct: 66  IVHYNGC 72

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 17/111 (15%), Positives = 42/111 (37%), Gaps = 8/111 (7%)

Query: 270 TDNFSESNIIGQGGFGKVYKGVLSD-NTKVAVKRLQDYYSPGGEAAF-QREVHLISVAIH 327
           +  +S    +G G FG V +    +   + A+K++        +  +  RE+ ++ V  H
Sbjct: 6   SKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQ------DPRYKNRELDIMKVLDH 59

Query: 328 KNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKIISLSSLHCF 378
            N+++L+ Y  T+ +     P   +       + +         + +    
Sbjct: 60  VNIIKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQN 110

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 4/43 (9%)

Query: 279 IGQGGFGKVYKG---VLSDNTKVAVKRLQDYYSPGGEAAFQRE 318
           I  GG G +Y      ++    V +K L        +A    E
Sbjct: 88  IAHGGLGWIYLALDRNVNGRP-VVLKGLVHSGDAEAQAMAMAE 129

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 8/76 (10%)

Query: 279 IGQGGFGKVYKGV-LSDNTKVAVKRL-------QDYYSPGGEAAFQREVHLISVAIHKNL 330
           +G G FG V+  V    N +V VK +         +           E+ ++S   H N+
Sbjct: 32  LGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANI 91

Query: 331 LQLIGYCTTSSERILV 346
           ++++          LV
Sbjct: 92  IKVLDIFENQGFFQLV 107

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 14/98 (14%)

Query: 263 CRELQLATDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQ-DYYSPGGEAAFQREVH 320
           C E+      + +   IGQG FG+V+K        KVA+K++  +    G      RE+ 
Sbjct: 13  CDEV----SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIK 68

Query: 321 LISVAIHKNLLQLIGYCTTSSERI--------LVYPFM 350
           ++ +  H+N++ LI  C T +           LV+ F 
Sbjct: 69  ILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFC 106

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 271 DNFSESNIIGQGGFGKVYKGV-LSDNTKVAVK--RLQDYYSPGGEAAFQREVHLISVAIH 327
            NF     IG+G F +VY+   L D   VA+K  ++ D       A   +E+ L+    H
Sbjct: 32  ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNH 91

Query: 328 KN 329
            N
Sbjct: 92  PN 93

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 270 TDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHK 328
            + F++   IG+G FG+V+KG+       VA+K +    +       Q+E+ ++S     
Sbjct: 21  EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSP 80

Query: 329 NLLQLIG 335
            + +  G
Sbjct: 81  YVTKYYG 87

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 11/67 (16%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 270 TDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHK 328
              ++    IGQG  G VY  + ++   +VA++++ +      +     E+ ++    + 
Sbjct: 19  KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQM-NLQQQPKKELIINEILVMRENKNP 77

Query: 329 NLLQLIG 335
           N++  + 
Sbjct: 78  NIVNYLD 84

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 270 TDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHK 328
            + +     +G G FGKVYK          A K + +  S      +  E+ +++   H 
Sbjct: 18  NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVI-ETKSEEELEDYIVEIEILATCDHP 76

Query: 329 NLLQLIG 335
            +++L+G
Sbjct: 77  YIVKLLG 83

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 104 SLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPA-TWSQLSNLKHLDLSSNNLTG 162
            LEL+ N L          +T L  L+L+ N+   S+P   + +L+ L  L L  N L  
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ- 89

Query: 163 RIPMQLF 169
            +P  +F
Sbjct: 90  SLPNGVF 96

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 18/98 (18%)

Query: 261 FSCRELQLATDNFSE------SNIIGQGGFGKVYKGV-LSDNTKVAVK-----RLQDYYS 308
           F  R +       +       + I+G G FG+V+K    +   K+A K      ++D   
Sbjct: 73  FDHRIVTAKQGAVNSFYTVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKD--- 129

Query: 309 PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV 346
              +   + E+ +++   H NL+QL     + ++ +LV
Sbjct: 130 ---KEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLV 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	380
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.86
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.85
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.85
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.84
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.83
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.82
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.82
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.82
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.81
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.81
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.81
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.8
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.8
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.8
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.79
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.78
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.78
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.77
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.76
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.74
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.73
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.69
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.68
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.67
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.67
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.67
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.67
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.67
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.66
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.66
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.66
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.66
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.65
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.65
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.65
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.64
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.64
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.64
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.64
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.64
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.64
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.63
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.63
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.63
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.63
3uqc_A	286	Probable conserved transmembrane protein; structur	99.63
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.63
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.63
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.63
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.62
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.62
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.62
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.62
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.62
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.62
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.62
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.61
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.61
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.61
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.61
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.61
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.61
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.61
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.61
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.6
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.6
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.6
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.6
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.6
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.6
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.59
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.59
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.59
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.59
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.59
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.59
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.59
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.59
3niz_A	311	Rhodanese family protein; structural genomics, str	99.59
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.59
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.59
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.59
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.59
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.59
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.59
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.59
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.59
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.59
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.58
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.58
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.58
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.58
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.58
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.58
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.58
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.58
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.58
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.58
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.58
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.58
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.58
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.58
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.58
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.57
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.57
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.57
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.57
3bhy_A	283	Death-associated protein kinase 3; death associate	99.57
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.57
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.57
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.57
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.57
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.57
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.57
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.57
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.57
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.57
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.57
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.57
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.57
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.56
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.56
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.56
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.56
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.56
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.56
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.56
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.56
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.56
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.56
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.55
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.55
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.55
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.55
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.55
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.55
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.55
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.55
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.55
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.55
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.55
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.55
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.55
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.54
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.54
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.54
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.54
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.54
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.54
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.54
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.54
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.54
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.54
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.54
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.54
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.54
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.54
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.54
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.53
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.53
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.53
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.53
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.53
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.53
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.53
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.53
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.53
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.53
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.53
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.53
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.53
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.53
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.53
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.53
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.52
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.52
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.52
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.52
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.52
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.52
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.52
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.52
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.52
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.52
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.52
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.51
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.51
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.51
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.51
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.51
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.51
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.51
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.51
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.51
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.51
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.51
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.51
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.5
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.5
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.5
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.5
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.5
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.5
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.49
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.49
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.49
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.49
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.49
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.49
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.48
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.48
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.48
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.48
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.48
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.48
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.48
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.48
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.48
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.48
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.47
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.47
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.47
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.47
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.47
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.47
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.47
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.46
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.46
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.46
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.46
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.45
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.45
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.45
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.45
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.45
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.45
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.45
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.45
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.44
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.44
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.44
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.44
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.44
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.44
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.44
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.44
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.44
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.44
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.44
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.44
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.44
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.44
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.43
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.43
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.43
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.42
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.42
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.42
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.42
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.42
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.41
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.41
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.41
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.4
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.4
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.4
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.4
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.4
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.4
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.4
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.39
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.39
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.39
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.38
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.38
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.38
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.38
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.38
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.38
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.37
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.37
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.37
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.37
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.37
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.36
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.36
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.36
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.36
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.36
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.36
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.36
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.35
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.35
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.35
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.35
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.34
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.34
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.34
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.34
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.34
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.34
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.34
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.33
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.33
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.33
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.33
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.32
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.32
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.32
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.31
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.31
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.3
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.3
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.3
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.3
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.29
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.29
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.29
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.28
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.28
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.27
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.27
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.27
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.26
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.26
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.25
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.24
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.24
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.2
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.2
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.2
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.17
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.03
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.02
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.02
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.02
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.01
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.01
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.0
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.0
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.99
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.99
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.98
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.98
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.98
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.97
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.96
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.95
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.94
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.92
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	98.9
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.88
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	98.87
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.86
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.86
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	98.78
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.78
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.77
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.71
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.57
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.57
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.53
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.29
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.29
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.25
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.03
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.02
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.01
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	97.91
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.72
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.72
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	97.72
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.56
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.54
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.49
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.37
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.36
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	97.01
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.98
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.73
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.23
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.2
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	95.74
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	95.57
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	94.76
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	94.6
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.48
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	94.31
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	94.28
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	93.77
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	93.31
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	93.25
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	93.18
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	93.17
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	91.78
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	91.56
3ats_A	357	Putative uncharacterized protein; hypothetical pro	89.62
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	89.31
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	88.28
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	87.73
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	87.29
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	84.37
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	82.98
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	81.32
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	81.2

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=2.9e-23  Score=194.80  Aligned_cols=148  Identities=28%  Similarity=0.504  Sum_probs=133.9

Q ss_pred             CCCchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC--ceeeEecC----CCEEEEEeCCCCCcc--ccchhHhCCccC
Q 016905           31 REPDVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFS--WSHVTCRN----GNVISLTLGSNGFSG--KISPSITKLKFL  102 (380)
Q Consensus        31 ~~~~~~~~~l~~~~~~~~~~~~~l~~w~~~~~~~c~~--w~gv~c~~----~~l~~l~L~~n~l~g--~~p~~~~~l~~L  102 (380)
                      .|.+.|++||++||+++.+|. .+.+|..+ .+|| .  |.||.|+.    .+|+.|+|++|+++|  .+|+.|+++++|
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~-~~~C-~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L   78 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPT-TDCC-NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL   78 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTT-SCTT-TTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCCCC-CCCC-cCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCC
Confidence            467889999999999998876 78899764 4777 6  99999985    589999999999999  999999999999


Q ss_pred             CeEEcCC-CcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECcCCcccccCccccccc---cccccCC
Q 016905          103 ASLELQD-NDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSV---ATFNFTG  178 (380)
Q Consensus       103 ~~L~Ls~-N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~---~~~~~~g  178 (380)
                      ++|+|++ |+++|.+|..|+++++|++|+|++|+++|.+|..|.++++|++|||++|.+++.+|..+..+   ..+++.+
T Consensus        79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  158 (313)
T 1ogq_A           79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG  158 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred             CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcC
Confidence            9999995 99999999999999999999999999999999999999999999999999999999877654   5566777


Q ss_pred             Ccc
Q 016905          179 THL  181 (380)
Q Consensus       179 N~~  181 (380)
                      |..
T Consensus       159 N~l  161 (313)
T 1ogq_A          159 NRI  161 (313)
T ss_dssp             SCC
T ss_pred             Ccc
Confidence            754

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.86  E-value=1.4e-22  Score=189.45  Aligned_cols=109  Identities=22%  Similarity=0.307  Sum_probs=91.6

Q ss_pred             CcccccccccCCCeeEEEEEe------CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeE
Q 016905          272 NFSESNIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~l  345 (380)
                      +++..+.||+|+||+||+|++      .+++.||||+++........++|.+|+.++++++|||||+++|+|.+++..+|
T Consensus        27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l  106 (308)
T 4gt4_A           27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM  106 (308)
T ss_dssp             GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred             HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEE
Confidence            355578899999999999997      24679999999765555567899999999999999999999999999999999


Q ss_pred             EeecccCCChhhhcccccc-------------------------cceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHK-------------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~-------------------------~~~~~~aL~yLH~~~i  380 (380)
                      |||||++|||.++|+.+..                         ..+++.||+|||+++|
T Consensus       107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~i  166 (308)
T 4gt4_A          107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHV  166 (308)
T ss_dssp             EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999965321                         1348999999999876

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.85  E-value=2.4e-22  Score=187.05  Aligned_cols=110  Identities=25%  Similarity=0.407  Sum_probs=92.1

Q ss_pred             hcCcccccccccCCCeeEEEEEeC------CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCce
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLS------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSER  343 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~  343 (380)
                      .++|...+.||+|+||+||+|++.      +++.||||+++. .+....++|.+|+++|++++|||||+++|+|.+++..
T Consensus        12 r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~-~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~   90 (299)
T 4asz_A           12 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKD-ASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPL   90 (299)
T ss_dssp             GGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECS-CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSE
T ss_pred             HHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCC-CChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEE
Confidence            356777889999999999999873      477899999964 3444578899999999999999999999999999999


Q ss_pred             eEEeecccCCChhhhcccccc----------------------cceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHK----------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~----------------------~~~~~~aL~yLH~~~i  380 (380)
                      +||||||++|||.++|+..+.                      ..+++.||+|||+++|
T Consensus        91 ~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~i  149 (299)
T 4asz_A           91 IMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHF  149 (299)
T ss_dssp             EEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999999999999999975421                      2358999999999876

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.85  E-value=4.6e-22  Score=187.58  Aligned_cols=109  Identities=25%  Similarity=0.421  Sum_probs=93.2

Q ss_pred             cCcccccccccCCCeeEEEEEeC------CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCcee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLS------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~  344 (380)
                      ++|...++||+|+||.||+|++.      +++.||||+++. .+....++|.+|+++|++++|||||+++|+|.+++..+
T Consensus        41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~-~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~  119 (329)
T 4aoj_A           41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKE-ASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLL  119 (329)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESC-CSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred             HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECc-CCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            45667789999999999999873      478999999964 34445788999999999999999999999999999999


Q ss_pred             EEeecccCCChhhhcccccc------------------------cceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHK------------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~------------------------~~~~~~aL~yLH~~~i  380 (380)
                      ||||||++|+|.++|+....                        ..+++.||+|||+++|
T Consensus       120 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~i  179 (329)
T 4aoj_A          120 MVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHF  179 (329)
T ss_dssp             EEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCe
Confidence            99999999999999975431                        1348999999999876

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.84  E-value=4.2e-21  Score=202.02  Aligned_cols=144  Identities=22%  Similarity=0.338  Sum_probs=126.4

Q ss_pred             CCCchHHHHHHHHHHhcCCCCCCCCCCCCCC----CCC--CCCc------------eeeEecC-CCEEEEEeCCCCCccc
Q 016905           31 REPDVEGEALIEVLKALNDTHGQFTDWNDHF----VSP--CFSW------------SHVTCRN-GNVISLTLGSNGFSGK   91 (380)
Q Consensus        31 ~~~~~~~~~l~~~~~~~~~~~~~l~~w~~~~----~~~--c~~w------------~gv~c~~-~~l~~l~L~~n~l~g~   91 (380)
                      .+...|+.||++||+++.+|     +|..+.    .+|  | .|            .||.|+. ++|+.|+|++|+++|.
T Consensus       265 ~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C-~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~  338 (876)
T 4ecn_A          265 AEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSL-NWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGR  338 (876)
T ss_dssp             CHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCC-SCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEE
T ss_pred             ccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCcc-ccccccccccccCcCceEecCCCCEEEEECccCCCCCc
Confidence            34557999999999999876     787553    356  6 99            9999984 6999999999999999


Q ss_pred             cchhHhCCccCCeEEc-CCCcCccc-------------------------------------------------------
Q 016905           92 ISPSITKLKFLASLEL-QDNDLSGT-------------------------------------------------------  115 (380)
Q Consensus        92 ~p~~~~~l~~L~~L~L-s~N~l~g~-------------------------------------------------------  115 (380)
                      +|++|++|++|+.|+| ++|.++|.                                                       
T Consensus       339 ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~  418 (876)
T 4ecn_A          339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK  418 (876)
T ss_dssp             ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred             CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccc
Confidence            9999999999999999 88877665                                                       


Q ss_pred             ---------------------CChhhhCCcccCeeeccCccccc-----------------cCCcccc--CCCCCCEEEC
Q 016905          116 ---------------------LPDFLGSMTHLQSLNLANNKFSG-----------------SIPATWS--QLSNLKHLDL  155 (380)
Q Consensus       116 ---------------------~p~~~~~l~~L~~l~Ls~N~l~g-----------------~iP~~~~--~l~~L~~L~l  155 (380)
                                           ||..|+++++|+.|+|++|+|+|                 .||..++  ++++|+.|+|
T Consensus       419 ~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~L  498 (876)
T 4ecn_A          419 KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL  498 (876)
T ss_dssp             CCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred             cccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEEC
Confidence                                 89999999999999999999999                 4999988  9999999999


Q ss_pred             cCCcccccCccccccc---cccccCCCc
Q 016905          156 SSNNLTGRIPMQLFSV---ATFNFTGTH  180 (380)
Q Consensus       156 s~N~l~g~~p~~~~~~---~~~~~~gN~  180 (380)
                      ++|++.|.+|..+.++   ..+++.+|.
T Consensus       499 s~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          499 YNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             ESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             cCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            9999999999877654   556677775

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.83  E-value=3e-21  Score=182.72  Aligned_cols=110  Identities=17%  Similarity=0.252  Sum_probs=89.7

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++... ......+.|.+|+++|++++|||||++++++.+++..|||||
T Consensus        24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE  103 (350)
T 4b9d_A           24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD  103 (350)
T ss_dssp             CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence            5788899999999999999998 67999999999633 233446789999999999999999999999999999999999


Q ss_pred             cccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      ||++|+|.++|+.++.           ..+++.||+|||++||
T Consensus       104 y~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~I  146 (350)
T 4b9d_A          104 YCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKI  146 (350)
T ss_dssp             CCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999999999964432           1348999999999987

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.82  E-value=2e-20  Score=195.98  Aligned_cols=118  Identities=35%  Similarity=0.580  Sum_probs=111.1

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +++.|||++|.++|.+|.+|+++++|+.|+|++|+|+|.+|..++++++|+.||||+|+|+|.||..++++++|+.||||
T Consensus       633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls  712 (768)
T 3rgz_A          633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS  712 (768)
T ss_dssp             CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred             cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCccc--cccccccccCCCccccCCCCCCCCCCCC
Q 016905          157 SNNLTGRIPMQ--LFSVATFNFTGTHLICGSSLEQPCMSRP  195 (380)
Q Consensus       157 ~N~l~g~~p~~--~~~~~~~~~~gN~~lc~~~~~~~c~~~~  195 (380)
                      +|+|+|.||..  +.++...+|.||+.+||.+.. +|....
T Consensus       713 ~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~  752 (768)
T 3rgz_A          713 NNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN  752 (768)
T ss_dssp             SSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred             CCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence            99999999964  667788899999999998865 786543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.82  E-value=1.7e-20  Score=196.46  Aligned_cols=149  Identities=29%  Similarity=0.429  Sum_probs=119.1

Q ss_pred             CCCCchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCceeeEecCCCEEEEEeCCCCCccc---cch------------
Q 016905           30 SREPDVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGK---ISP------------   94 (380)
Q Consensus        30 ~~~~~~~~~~l~~~~~~~~~~~~~l~~w~~~~~~~c~~w~gv~c~~~~l~~l~L~~n~l~g~---~p~------------   94 (380)
                      +...+.|++||++||+++.||. .+++|..+ .++| .|.||+|+.++|+.|+|+++.++|.   +|+            
T Consensus         7 ~~~~~~~~~all~~k~~~~~~~-~l~~W~~~-~~~C-~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~   83 (768)
T 3rgz_A            7 SQSLYREIHQLISFKDVLPDKN-LLPDWSSN-KNPC-TFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF   83 (768)
T ss_dssp             -CCHHHHHHHHHHHHTTCSCTT-SSTTCCTT-SCGG-GSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred             ccCCHHHHHHHHHHHhhCCCcc-cccCCCCC-CCCc-CCcceEECCCcEEEEECCCCCcCCccCccChhHhccCcccccC
Confidence            3446679999999999999998 89999843 4677 9999999988999999999999998   665            


Q ss_pred             -----------hHhCCccCCeEEcCCCcCcccCCh--hhhCCcccCeeeccCccccccCCccc-cCCCCCCEEECcCCcc
Q 016905           95 -----------SITKLKFLASLELQDNDLSGTLPD--FLGSMTHLQSLNLANNKFSGSIPATW-SQLSNLKHLDLSSNNL  160 (380)
Q Consensus        95 -----------~~~~l~~L~~L~Ls~N~l~g~~p~--~~~~l~~L~~l~Ls~N~l~g~iP~~~-~~l~~L~~L~ls~N~l  160 (380)
                                 .|+++++|++|+|++|.++|.+|.  .++++++|++|||++|+++|.+|..+ .++++|++|||++|++
T Consensus        84 ~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  163 (768)
T 3rgz_A           84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI  163 (768)
T ss_dssp             CTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred             CcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc
Confidence                       556667888888888888888887  78888888888888888888888766 7788888888888888


Q ss_pred             cccCccc---c---ccccccccCCCcc
Q 016905          161 TGRIPMQ---L---FSVATFNFTGTHL  181 (380)
Q Consensus       161 ~g~~p~~---~---~~~~~~~~~gN~~  181 (380)
                      ++.+|..   +   .++..+++.+|..
T Consensus       164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l  190 (768)
T 3rgz_A          164 SGANVVGWVLSDGCGELKHLAISGNKI  190 (768)
T ss_dssp             EEETHHHHHHTTCCTTCCEEECCSSEE
T ss_pred             CCcCChhhhhhccCCCCCEEECCCCcc
Confidence            8877654   2   3445566666653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.82  E-value=2.1e-20  Score=191.81  Aligned_cols=145  Identities=21%  Similarity=0.297  Sum_probs=125.1

Q ss_pred             CchHHHHHHHHHHhcCCCCCC--------CCCCCCCCCCCCCCc---eeeEecC-CCEEEEEeCCCCCccccchhHhCCc
Q 016905           33 PDVEGEALIEVLKALNDTHGQ--------FTDWNDHFVSPCFSW---SHVTCRN-GNVISLTLGSNGFSGKISPSITKLK  100 (380)
Q Consensus        33 ~~~~~~~l~~~~~~~~~~~~~--------l~~w~~~~~~~c~~w---~gv~c~~-~~l~~l~L~~n~l~g~~p~~~~~l~  100 (380)
                      ...|++||.+++.+++++...        ..+|..+ .++| .|   .||+|+. ++|+.|+|++|+++|.+|++|++|+
T Consensus        28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~-~~~c-~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~  105 (636)
T 4eco_A           28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN-KELD-MWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLT  105 (636)
T ss_dssp             HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCS-SCGG-GTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCT
T ss_pred             HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC-CCcc-cccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCc
Confidence            446999999999999876543        2368754 4677 99   9999975 4999999999999999999999999


Q ss_pred             cCCeEEcCCC----------------------------------------------------------------------
Q 016905          101 FLASLELQDN----------------------------------------------------------------------  110 (380)
Q Consensus       101 ~L~~L~Ls~N----------------------------------------------------------------------  110 (380)
                      +|++|+|++|                                                                      
T Consensus       106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~  185 (636)
T 4eco_A          106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD  185 (636)
T ss_dssp             TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred             cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence            9999999998                                                                      


Q ss_pred             --------cCcccCChhhhCCcccCeeeccCcccccc-----------------CCcccc--CCCCCCEEECcCCccccc
Q 016905          111 --------DLSGTLPDFLGSMTHLQSLNLANNKFSGS-----------------IPATWS--QLSNLKHLDLSSNNLTGR  163 (380)
Q Consensus       111 --------~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~-----------------iP~~~~--~l~~L~~L~ls~N~l~g~  163 (380)
                              +|+| ||..++++++|++|+|++|+|+|.                 +|..++  ++++|++|+|++|++.|.
T Consensus       186 l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~  264 (636)
T 4eco_A          186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK  264 (636)
T ss_dssp             TTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred             hhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc
Confidence                    4456 899999999999999999999996                 999999  999999999999999999


Q ss_pred             Cccccccc---cccccCCCc
Q 016905          164 IPMQLFSV---ATFNFTGTH  180 (380)
Q Consensus       164 ~p~~~~~~---~~~~~~gN~  180 (380)
                      +|..+.++   ..+++.+|.
T Consensus       265 ~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          265 LPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             CCTTTTTCSSCCEEECTTCT
T ss_pred             ChHHHhcCCCCCEEECcCCC
Confidence            99877644   556677775

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.81  E-value=1.1e-20  Score=176.11  Aligned_cols=109  Identities=29%  Similarity=0.408  Sum_probs=90.4

Q ss_pred             HhcCcccccccccCCCeeEEEEEeCCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ..+++...+.||+|+||+||+|++.+  .||||+++.. .+....++|.+|+++|++++|||||+++|+|.+ +..+|||
T Consensus        34 ~~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVm  110 (307)
T 3omv_A           34 EASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVT  110 (307)
T ss_dssp             CTTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEE
T ss_pred             cHHHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEE
Confidence            34567778899999999999999743  5999999632 233456789999999999999999999999865 5689999


Q ss_pred             ecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      |||++|||.++|+.....          .+++.||+|||+++|
T Consensus       111 Ey~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~~~I  153 (307)
T 3omv_A          111 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNI  153 (307)
T ss_dssp             ECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EcCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            999999999999754321          348999999999886

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.81  E-value=4.4e-21  Score=178.70  Aligned_cols=110  Identities=17%  Similarity=0.194  Sum_probs=96.2

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc--CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY--YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~--~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|+..++||+|+||+||+|+. .+|+.||||++...  ......+.+.+|+++|++++|||||++++++.+++..||||
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm  111 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL  111 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            5688999999999999999998 67999999999632  12334678999999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.++|+..+..         .+++.||+|||+++|
T Consensus       112 Ey~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~~~I  153 (311)
T 4aw0_A          112 SYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGI  153 (311)
T ss_dssp             CCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             ecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence            999999999999865444         349999999999886

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.81  E-value=8e-21  Score=179.48  Aligned_cols=110  Identities=19%  Similarity=0.228  Sum_probs=94.6

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .+.|+..+.||+|+||.||+|+. .+|+.||||++... .....+.+.+|+++|++++|||||++++++.+++..|||||
T Consensus        73 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~-~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmE  151 (346)
T 4fih_A           73 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLR-KQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVME  151 (346)
T ss_dssp             GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGG-GCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             hHhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecC-chhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence            35688889999999999999998 57999999999632 23345678999999999999999999999999999999999


Q ss_pred             cccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      ||++|+|.++++..+.        ..+++.||+|||++||
T Consensus       152 y~~gg~L~~~l~~~~l~e~~~~~~~~qi~~aL~ylH~~~I  191 (346)
T 4fih_A          152 FLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGV  191 (346)
T ss_dssp             CCTTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             CCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            9999999999975322        1349999999999886

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.80  E-value=1.8e-20  Score=174.39  Aligned_cols=110  Identities=17%  Similarity=0.239  Sum_probs=90.7

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCC--------
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS--------  341 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~--------  341 (380)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++.........+.|.+|+++|++++|||||++++++...+        
T Consensus         5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~   84 (299)
T 4g31_A            5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS   84 (299)
T ss_dssp             HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred             hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence            4588899999999999999998 5799999999964434445678999999999999999999999986543        


Q ss_pred             ----ceeEEeecccCCChhhhccccccc------------ceeeeeecceeeecC
Q 016905          342 ----ERILVYPFMQNLSVAYRLRVSHKI------------YTKIISLSSLHCFSL  380 (380)
Q Consensus       342 ----~~~lV~Ey~~~GsL~~~L~~~~~~------------~~~~~aL~yLH~~~i  380 (380)
                          ..++|||||++|+|.++++.+...            .+++.||+|||++||
T Consensus        85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~I  139 (299)
T 4g31_A           85 SPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKGL  139 (299)
T ss_dssp             --CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHCcC
Confidence                368999999999999999754322            358899999999986

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.80  E-value=2e-20  Score=181.19  Aligned_cols=110  Identities=19%  Similarity=0.228  Sum_probs=95.4

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .+.|+..+.||+|+||.||+|+. .+|+.||||++... .....+.+.+|+++|++++|||||++++++..++..|||||
T Consensus       150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~-~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmE  228 (423)
T 4fie_A          150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLR-KQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVME  228 (423)
T ss_dssp             GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEST-TCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEecc-chhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEe
Confidence            45688899999999999999998 57999999999632 33346678999999999999999999999999999999999


Q ss_pred             cccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      ||++|+|.++++..+.        ..+++.||+|||++||
T Consensus       229 y~~gG~L~~~i~~~~l~e~~~~~~~~qil~aL~ylH~~~I  268 (423)
T 4fie_A          229 FLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGV  268 (423)
T ss_dssp             CCTTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             CCCCCcHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999999999975432        2459999999999886

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.80  E-value=2.6e-20  Score=172.23  Aligned_cols=106  Identities=23%  Similarity=0.283  Sum_probs=88.7

Q ss_pred             ccccccccCCCeeEEEEEe-CCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcCcCCCCccceeeeeC----CCceeEEe
Q 016905          274 SESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT----SSERILVY  347 (380)
Q Consensus       274 ~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~----~~~~~lV~  347 (380)
                      +..++||+|+||.||+|.. .++..||||++... ......+.|.+|+++|++++|||||++++++..    ++..+|||
T Consensus        29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm  108 (290)
T 3fpq_A           29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT  108 (290)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence            4456799999999999998 56899999999643 233446789999999999999999999999864    34579999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeec
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFS  379 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~  379 (380)
                      |||++|+|.++|+.....         .+++.||+|||+++
T Consensus       109 Ey~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~ylH~~~  149 (290)
T 3fpq_A          109 ELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRT  149 (290)
T ss_dssp             ECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             eCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            999999999999865443         34899999999987

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.79  E-value=1.9e-20  Score=178.07  Aligned_cols=120  Identities=19%  Similarity=0.303  Sum_probs=99.9

Q ss_pred             eCHHHHHHHhcCcccccccccCCCeeEEEEEeC------CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcC-CCCccc
Q 016905          261 FSCRELQLATDNFSESNIIGQGGFGKVYKGVLS------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIH-KNLLQL  333 (380)
Q Consensus       261 ~~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H-~Niv~l  333 (380)
                      +...+++...++|+..+.||+|+||.||+|.+.      .++.||||++.........++|.+|+++|.+++| ||||++
T Consensus        54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l  133 (353)
T 4ase_A           54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL  133 (353)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             CCCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEE
Confidence            445677888899999999999999999999872      2368999999765555557789999999999955 899999


Q ss_pred             eeeeeCC-CceeEEeecccCCChhhhcccccc-------------------------cceeeeeecceeeecC
Q 016905          334 IGYCTTS-SERILVYPFMQNLSVAYRLRVSHK-------------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       334 ~g~~~~~-~~~~lV~Ey~~~GsL~~~L~~~~~-------------------------~~~~~~aL~yLH~~~i  380 (380)
                      +|+|.++ +..+||||||++|+|.++|+..+.                         ..+++.||+|||+++|
T Consensus       134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~i  206 (353)
T 4ase_A          134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKC  206 (353)
T ss_dssp             EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCCe
Confidence            9999765 568999999999999999975432                         1358899999999876

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.78  E-value=7.8e-20  Score=167.72  Aligned_cols=109  Identities=19%  Similarity=0.305  Sum_probs=90.1

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|+..+.||+|+||+||+|.. .+|+.||||++....  .....+.|.+|+++|++++|||||++++++.+++..++||
T Consensus        13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm   92 (275)
T 3hyh_A           13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI   92 (275)
T ss_dssp             -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence            5799999999999999999998 579999999996332  2234677999999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+ +|+|.+++..+...         .+++.||+|||++||
T Consensus        93 Ey~-~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~I  133 (275)
T 3hyh_A           93 EYA-GNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRHKI  133 (275)
T ss_dssp             ECC-CEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eCC-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            999 68999999765544         349999999999986

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.78  E-value=5.1e-20  Score=173.43  Aligned_cols=105  Identities=14%  Similarity=0.123  Sum_probs=90.7

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .+.|+..+.||+|+||.||+|+. .+|+.||||+++...      .+.+|+.++++++|||||++++++.+++..+||||
T Consensus        57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~------~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmE  130 (336)
T 4g3f_A           57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEV------FRVEELVACAGLSSPRIVPLYGAVREGPWVNIFME  130 (336)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTT------CCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHH------hHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence            34577788899999999999998 569999999996421      12479999999999999999999999999999999


Q ss_pred             cccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||++|+|.++|+..+..         .+++.||+|||+++|
T Consensus       131 y~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~I  171 (336)
T 4g3f_A          131 LLEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTRRI  171 (336)
T ss_dssp             CCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred             ccCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            99999999999865543         349999999999886

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.77  E-value=1.8e-20  Score=174.36  Aligned_cols=110  Identities=20%  Similarity=0.254  Sum_probs=88.6

Q ss_pred             cCcccccccccCCCeeEEEEEe----CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeE
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL----SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~----~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~l  345 (380)
                      ++|+..+.||+|+||+||+|+.    .+++.||||++.... .......+.+|+++|.+++|||||++++++.+++..++
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i  103 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL  103 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred             cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence            5688899999999999999986    247899999996322 22234568899999999999999999999999999999


Q ss_pred             EeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |||||++|+|.++|+.....         .+++.||+|||++||
T Consensus       104 vmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~I  147 (304)
T 3ubd_A          104 ILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGI  147 (304)
T ss_dssp             EECCCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence            99999999999999865543         349999999999986

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.76  E-value=2.2e-19  Score=167.49  Aligned_cols=104  Identities=22%  Similarity=0.240  Sum_probs=82.5

Q ss_pred             CcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCC----ceeEEe
Q 016905          272 NFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS----ERILVY  347 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~----~~~lV~  347 (380)
                      ++...+.||+|+||+||+|++ +|+.||||++...  ......+..|+..+.+++|||||+++|+|..++    ..+|||
T Consensus         4 ~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~--~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~   80 (303)
T 3hmm_A            4 TIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR--EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS   80 (303)
T ss_dssp             GEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGG--GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred             EEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECcc--chhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEe
Confidence            456678999999999999998 7899999999532  111223345566667899999999999998653    579999


Q ss_pred             ecccCCChhhhccccccc--------ceeeeeecceeee
Q 016905          348 PFMQNLSVAYRLRVSHKI--------YTKIISLSSLHCF  378 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~--------~~~~~aL~yLH~~  378 (380)
                      |||++|||.++|+.....        .+++.||+|||+.
T Consensus        81 Ey~~~gsL~~~l~~~~l~~~~~~~i~~~ia~gl~ylH~~  119 (303)
T 3hmm_A           81 DYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHME  119 (303)
T ss_dssp             ECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCC
T ss_pred             cCCCCCcHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999865332        3489999999975

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.74  E-value=3.5e-19  Score=168.03  Aligned_cols=138  Identities=18%  Similarity=0.274  Sum_probs=120.8

Q ss_pred             CCCCCCchHHHHHHHHHHhc-CCCCCCCCCCC---CCCCCCCCCceeeEecC----------CCEEEEEeCCCCCccccc
Q 016905           28 HSSREPDVEGEALIEVLKAL-NDTHGQFTDWN---DHFVSPCFSWSHVTCRN----------GNVISLTLGSNGFSGKIS   93 (380)
Q Consensus        28 ~~~~~~~~~~~~l~~~~~~~-~~~~~~l~~w~---~~~~~~c~~w~gv~c~~----------~~l~~l~L~~n~l~g~~p   93 (380)
                      ........|.+||++||.++ .++.+.+.+|.   ....+.| .|.|+.|..          .+|+.|+|++|.++ .+|
T Consensus        20 ~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~-~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp   97 (328)
T 4fcg_A           20 QGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE-TRTGRALKATADLLEDATQPGRVALELRSVPLP-QFP   97 (328)
T ss_dssp             C--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSC-CSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCC
T ss_pred             eccccCchHHHHHHHHHHhccCCchhhhhhhccccccccccc-ccCCcchhhhHHHHhcccccceeEEEccCCCch-hcC
Confidence            34456677899999999998 47766677884   3334677 999999953          48999999999999 889


Q ss_pred             hhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECcCCcccccCccccc
Q 016905           94 PSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLF  169 (380)
Q Consensus        94 ~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~~p~~~~  169 (380)
                      +.++++++|++|+|++|.++ .+|..++++++|++|+|++|+++ .+|..++++++|+.|++++|++.+.+|..+.
T Consensus        98 ~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~  171 (328)
T 4fcg_A           98 DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLA  171 (328)
T ss_dssp             SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSE
T ss_pred             hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHh
Confidence            99999999999999999999 99999999999999999999999 9999999999999999999999999998754

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.73  E-value=1.8e-18  Score=167.08  Aligned_cols=109  Identities=17%  Similarity=0.309  Sum_probs=91.7

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC-CchHHHHHHHHHHHhcCcCCCCccceeeeeC------CCc
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS-PGGEAAFQREVHLISVAIHKNLLQLIGYCTT------SSE  342 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~------~~~  342 (380)
                      ++|+..+.||+|+||.||+|+. .+|+.||||++..... ....+.+.+|+++|.+++|||||++++++..      .+.
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~  133 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS  133 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence            5688899999999999999998 6799999999964322 2345678999999999999999999998764      356


Q ss_pred             eeEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      .|||||||+ |+|.+++...+..         .+++.||+|||++||
T Consensus       134 ~~ivmE~~~-g~L~~~i~~~~~l~~~~~~~~~~qil~al~ylH~~~i  179 (398)
T 4b99_A          134 VYVVLDLME-SDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMHSAQV  179 (398)
T ss_dssp             EEEEEECCS-EEHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEEeCCC-CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCcC
Confidence            899999996 7899999865543         449999999999986

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.72  E-value=2.4e-18  Score=161.59  Aligned_cols=125  Identities=56%  Similarity=0.855  Sum_probs=106.0

Q ss_pred             cccccceeCHHHHHHHhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccc
Q 016905          254 SLTQLRRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQL  333 (380)
Q Consensus       254 ~~~~~~~~~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l  333 (380)
                      ...+.+.+++.++..+.++|+..+.||+|+||.||+|...+++.||||++...........|.+|++++.+++||||+++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~   92 (326)
T 3uim_A           13 HLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRL   92 (326)
T ss_dssp             --CCCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCC
T ss_pred             ccCccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccce
Confidence            34456789999999999999999999999999999999888999999999754333344579999999999999999999


Q ss_pred             eeeeeCCCceeEEeecccCCChhhhccccccc-------------ceeeeeecceeee
Q 016905          334 IGYCTTSSERILVYPFMQNLSVAYRLRVSHKI-------------YTKIISLSSLHCF  378 (380)
Q Consensus       334 ~g~~~~~~~~~lV~Ey~~~GsL~~~L~~~~~~-------------~~~~~aL~yLH~~  378 (380)
                      ++++..++..++||||+++|+|.++++.....             .+++.||+|||+.
T Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~  150 (326)
T 3uim_A           93 RGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDH  150 (326)
T ss_dssp             CEEECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEEecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999865321             3378999999987

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=1.1e-17  Score=145.43  Aligned_cols=118  Identities=25%  Similarity=0.405  Sum_probs=106.6

Q ss_pred             CceeeEecCC-----------CEEEEEeCCCCCccccch-hHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCc
Q 016905           67 SWSHVTCRNG-----------NVISLTLGSNGFSGKISP-SITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANN  134 (380)
Q Consensus        67 ~w~gv~c~~~-----------~l~~l~L~~n~l~g~~p~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N  134 (380)
                      .|..+.|++.           +++.|+|++|.+++..+. .|+.+++|++|+|++|+|++..|..|+.+++|++|+|++|
T Consensus         9 ~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A            9 EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             ETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            7888888854           789999999999987765 4999999999999999999999999999999999999999


Q ss_pred             cccccCCccccCCCCCCEEECcCCcccccCcccccc---ccccccCCCccccC
Q 016905          135 KFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS---VATFNFTGTHLICG  184 (380)
Q Consensus       135 ~l~g~iP~~~~~l~~L~~L~ls~N~l~g~~p~~~~~---~~~~~~~gN~~lc~  184 (380)
                      +|++..|..|..+++|+.|||++|+|++.+|..+..   +..+++.+|++.|.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            999999989999999999999999999999977654   56778899998775

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.71  E-value=5.1e-18  Score=171.51  Aligned_cols=110  Identities=19%  Similarity=0.301  Sum_probs=95.3

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .++|+..+.||+|+||.||+|.. .+|+.||+|++... .....+.+.+|+++|..++|||||++++++..++..+||||
T Consensus       156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~-~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E  234 (573)
T 3uto_A          156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTP-HESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYE  234 (573)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-SHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEecc-chhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEe
Confidence            36788999999999999999998 67999999999542 23346778999999999999999999999999999999999


Q ss_pred             cccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      ||++|+|.++|..+..          ..+++.||+|||+++|
T Consensus       235 ~~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~~i  276 (573)
T 3uto_A          235 FMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNY  276 (573)
T ss_dssp             CCCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             ecCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999999999865432          2458999999999875

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.69  E-value=6.7e-17  Score=144.49  Aligned_cols=118  Identities=26%  Similarity=0.345  Sum_probs=101.5

Q ss_pred             CCCCCCceeeEecCC-----------CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeee
Q 016905           62 VSPCFSWSHVTCRNG-----------NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLN  130 (380)
Q Consensus        62 ~~~c~~w~gv~c~~~-----------~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~  130 (380)
                      ...| .|.+|.|++.           +++.|+|++|.+++..|..|.++++|++|+|++|+|++..+..|..+++|+.|+
T Consensus        16 ~~~C-s~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~   94 (229)
T 3e6j_A           16 QCSC-SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD   94 (229)
T ss_dssp             TCEE-ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCEE-eCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence            3678 8999999864           689999999999999999999999999999999999866666789999999999


Q ss_pred             ccCccccccCCccccCCCCCCEEECcCCcccccCcccccc---ccccccCCCcc
Q 016905          131 LANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS---VATFNFTGTHL  181 (380)
Q Consensus       131 Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~~p~~~~~---~~~~~~~gN~~  181 (380)
                      |++|+|++..|..|..+++|+.|+|++|+|+ .+|..+..   +..+++.+|..
T Consensus        95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l  147 (229)
T 3e6j_A           95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL  147 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCC
T ss_pred             CCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcC
Confidence            9999999777777899999999999999999 78876644   45566777754

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.68  E-value=1.1e-16  Score=139.40  Aligned_cols=118  Identities=24%  Similarity=0.363  Sum_probs=104.9

Q ss_pred             CceeeEecCC-----------CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCcc
Q 016905           67 SWSHVTCRNG-----------NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK  135 (380)
Q Consensus        67 ~w~gv~c~~~-----------~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~  135 (380)
                      .|..+.|++.           +++.|+|++|.++ .+|..|.++++|+.|+|++|.|++..|..|.++++|++|+|++|+
T Consensus        11 ~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           11 LDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             ETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            6778888753           6899999999998 788999999999999999999998888899999999999999999


Q ss_pred             ccccCCccccCCCCCCEEECcCCcccccCcccc---ccccccccCCCccccCC
Q 016905          136 FSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQL---FSVATFNFTGTHLICGS  185 (380)
Q Consensus       136 l~g~iP~~~~~l~~L~~L~ls~N~l~g~~p~~~---~~~~~~~~~gN~~lc~~  185 (380)
                      |++..|..|..+++|+.|+|++|+|++..+..+   .++..+.+.+|++.|++
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence            998888899999999999999999996555444   45677889999998864

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.67  E-value=1.9e-17  Score=167.87  Aligned_cols=111  Identities=23%  Similarity=0.268  Sum_probs=90.9

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHH---HHHHHHhcCcCCCCccceeeeeCCCce
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQ---REVHLISVAIHKNLLQLIGYCTTSSER  343 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~---~e~~~l~~l~H~Niv~l~g~~~~~~~~  343 (380)
                      .++|+..++||+|+||.||+|+. .+|+.||||++....  .......+.   .++.++..++|||||++++++.+++..
T Consensus       188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l  267 (689)
T 3v5w_A          188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL  267 (689)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred             hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence            35789999999999999999998 679999999995321  111223333   446777888999999999999999999


Q ss_pred             eEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |||||||++|+|.++|+.....         .+++.||+|||++||
T Consensus       268 ylVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH~~gI  313 (689)
T 3v5w_A          268 SFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFV  313 (689)
T ss_dssp             EEEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred             EEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            9999999999999999865543         349999999999886

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.67  E-value=1.5e-17  Score=156.01  Aligned_cols=119  Identities=38%  Similarity=0.574  Sum_probs=101.3

Q ss_pred             eCHHHHHHHhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCC
Q 016905          261 FSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS  340 (380)
Q Consensus       261 ~~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~  340 (380)
                      +++.++..++++|+..+.||+|+||.||+|+..+++.||||++... .....+.|.+|++++.+++||||+++++++..+
T Consensus        29 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~  107 (321)
T 2qkw_B           29 VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPE-SSQGIEEFETEIETLSFCRHPHLVSLIGFCDER  107 (321)
T ss_dssp             -CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSC-CSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCT
T ss_pred             ecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEeccc-ChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCC
Confidence            4445556678899999999999999999999988999999998643 344577899999999999999999999999999


Q ss_pred             CceeEEeecccCCChhhhcccccc-------------cceeeeeecceeeecC
Q 016905          341 SERILVYPFMQNLSVAYRLRVSHK-------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       341 ~~~~lV~Ey~~~GsL~~~L~~~~~-------------~~~~~~aL~yLH~~~i  380 (380)
                      +..++||||+++|+|.++++....             ..+++.||+|||+.+|
T Consensus       108 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i  160 (321)
T 2qkw_B          108 NEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAI  160 (321)
T ss_dssp             TCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             CeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCCe
Confidence            999999999999999999975431             1337889999998874

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.67  E-value=1.7e-17  Score=158.47  Aligned_cols=110  Identities=19%  Similarity=0.307  Sum_probs=93.0

Q ss_pred             HHhcCcccccccccCCCeeEEEEEe----CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCc
Q 016905          268 LATDNFSESNIIGQGGFGKVYKGVL----SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSE  342 (380)
Q Consensus       268 ~~~~~~~~~~~lg~G~~g~Vy~~~~----~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~  342 (380)
                      ...+.|+..+.||+|+||+||+|+.    .+++.||||++...   .....+.+|+++|..+ +|||||++++++...+.
T Consensus        18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~---~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~   94 (361)
T 4f9c_A           18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPT---SHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDH   94 (361)
T ss_dssp             GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTT---SCHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTE
T ss_pred             CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccc---cCHHHHHHHHHHHHHhcCCCCCceEEEEEEECCE
Confidence            3567899999999999999999986    24678999998542   2356788999999988 69999999999999999


Q ss_pred             eeEEeecccCCChhhhcccc------cccceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVS------HKIYTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~------~~~~~~~~aL~yLH~~~i  380 (380)
                      .++|||||++|+|.++++.-      ....+++.||+|||++||
T Consensus        95 ~~lvmE~~~g~~L~~~~~~l~~~~~~~~~~qll~al~ylH~~gI  138 (361)
T 4f9c_A           95 VVIAMPYLEHESFLDILNSLSFQEVREYMLNLFKALKRIHQFGI  138 (361)
T ss_dssp             EEEEEECCCCCCHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEEEEeCCCcccHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            99999999999999998632      123569999999999886

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.67  E-value=1.2e-16  Score=142.03  Aligned_cols=91  Identities=20%  Similarity=0.238  Sum_probs=46.6

Q ss_pred             EEEEEeCCCCCccccch-hHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           78 VISLTLGSNGFSGKISP-SITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        78 l~~l~L~~n~l~g~~p~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      ++.|+|++|.+++..|. .|.++++|++|+|++|+|++..|..|+.+++|++|+|++|++++..|..|..+++|+.|+|+
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  113 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR  113 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence            44555555555554332 24555555555555555554444455555555555555555554444445555555555555


Q ss_pred             CCcccccCcccc
Q 016905          157 SNNLTGRIPMQL  168 (380)
Q Consensus       157 ~N~l~g~~p~~~  168 (380)
                      +|++++..|..+
T Consensus       114 ~N~l~~~~~~~~  125 (220)
T 2v70_A          114 SNRITCVGNDSF  125 (220)
T ss_dssp             TSCCCCBCTTSS
T ss_pred             CCcCCeECHhHc
Confidence            555554444433

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.67  E-value=9.3e-17  Score=149.31  Aligned_cols=123  Identities=34%  Similarity=0.540  Sum_probs=105.1

Q ss_pred             ccceeCHHHHHHHhcCcccc------cccccCCCeeEEEEEeCCCcEEEEEEecccC---CCchHHHHHHHHHHHhcCcC
Q 016905          257 QLRRFSCRELQLATDNFSES------NIIGQGGFGKVYKGVLSDNTKVAVKRLQDYY---SPGGEAAFQREVHLISVAIH  327 (380)
Q Consensus       257 ~~~~~~~~~l~~~~~~~~~~------~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~---~~~~~~~f~~e~~~l~~l~H  327 (380)
                      ....|++.++..++++|+..      +.||+|+||.||+|.. +++.||||++....   .....+.|.+|+.++.+++|
T Consensus        11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h   89 (307)
T 2nru_A           11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQH   89 (307)
T ss_dssp             CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCC
T ss_pred             CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCC
Confidence            34579999999999999887      8899999999999997 78899999986422   23346789999999999999


Q ss_pred             CCCccceeeeeCCCceeEEeecccCCChhhhcccccc------------cceeeeeecceeeecC
Q 016905          328 KNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHK------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       328 ~Niv~l~g~~~~~~~~~lV~Ey~~~GsL~~~L~~~~~------------~~~~~~aL~yLH~~~i  380 (380)
                      |||+++++++...+..++||||+++|+|.+++.....            ..+++.||+|||+.+|
T Consensus        90 ~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i  154 (307)
T 2nru_A           90 ENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHH  154 (307)
T ss_dssp             TTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             CCeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCCe
Confidence            9999999999999999999999999999999874321            1348899999998874

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.66  E-value=2.6e-16  Score=139.79  Aligned_cols=115  Identities=22%  Similarity=0.268  Sum_probs=85.8

Q ss_pred             CceeeEecCC-----------CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCcc
Q 016905           67 SWSHVTCRNG-----------NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK  135 (380)
Q Consensus        67 ~w~gv~c~~~-----------~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~  135 (380)
                      .|..+.|++.           +++.|+|++|++++..+..|..+++|+.|+|++|++++..|..|.++++|++|+|++|+
T Consensus        12 ~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           12 SNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             ETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            6888888753           57788888888887777778888888888888888887778888888888888888888


Q ss_pred             ccccCCccccCCCCCCEEECcCCcccccCccccc---cccccccCCCcc
Q 016905          136 FSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLF---SVATFNFTGTHL  181 (380)
Q Consensus       136 l~g~iP~~~~~l~~L~~L~ls~N~l~g~~p~~~~---~~~~~~~~gN~~  181 (380)
                      |++..|..|..+++|+.|+|++|++++..|..+.   ++..+++.+|..
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  140 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL  140 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcC
Confidence            8844444567788888888888888877666554   334555666643

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.66  E-value=8.8e-17  Score=150.98  Aligned_cols=121  Identities=17%  Similarity=0.143  Sum_probs=101.7

Q ss_pred             ceeCHHHHHHHhcC----------cccccccccCCCeeEEEEEeC-CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcC
Q 016905          259 RRFSCRELQLATDN----------FSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIH  327 (380)
Q Consensus       259 ~~~~~~~l~~~~~~----------~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H  327 (380)
                      ..++++++..+++.          |+..+.||+|+||.||+|... +|+.||||++... .....+.+.+|+.++.+++|
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h  101 (321)
T 2c30_A           23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLR-KQQRRELLFNEVVIMRDYQH  101 (321)
T ss_dssp             --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETT-TCCSHHHHHHHHHHHTTCCC
T ss_pred             CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEecc-chhHHHHHHHHHHHHHhCCC
Confidence            45888888888865          666778999999999999984 7999999999643 33456789999999999999


Q ss_pred             CCCccceeeeeCCCceeEEeecccCCChhhhccccccc--------ceeeeeecceeeecC
Q 016905          328 KNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKI--------YTKIISLSSLHCFSL  380 (380)
Q Consensus       328 ~Niv~l~g~~~~~~~~~lV~Ey~~~GsL~~~L~~~~~~--------~~~~~aL~yLH~~~i  380 (380)
                      |||+++++++...+..++||||+++|+|.+++......        .+++.||+|||+.+|
T Consensus       102 ~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~l~~~~~~~i~~qi~~~L~~LH~~~i  162 (321)
T 2c30_A          102 FNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQGV  162 (321)
T ss_dssp             TTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             CCcceEEEEEEECCEEEEEEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            99999999999999999999999999999998754321        348899999998875

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.66  E-value=2.6e-16  Score=134.66  Aligned_cols=118  Identities=23%  Similarity=0.293  Sum_probs=102.1

Q ss_pred             CceeeEecCC-----------CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCcc
Q 016905           67 SWSHVTCRNG-----------NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK  135 (380)
Q Consensus        67 ~w~gv~c~~~-----------~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~  135 (380)
                      .|.++.|++.           +++.|+|++|.+++..+..|+++++|++|+|++|+|++..|..++.+++|+.|+|++|+
T Consensus         8 ~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             ETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            7999999863           68999999999998777778999999999999999997777778999999999999999


Q ss_pred             ccccCCccccCCCCCCEEECcCCcccccCcccc---ccccccccCCCccccC
Q 016905          136 FSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQL---FSVATFNFTGTHLICG  184 (380)
Q Consensus       136 l~g~iP~~~~~l~~L~~L~ls~N~l~g~~p~~~---~~~~~~~~~gN~~lc~  184 (380)
                      +++..|..+..+++|+.|++++|++++..+..+   .++..+.+.+|+..|.
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            997777788999999999999999996555333   3457778889887664

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.66  E-value=3.9e-17  Score=156.72  Aligned_cols=111  Identities=26%  Similarity=0.352  Sum_probs=94.4

Q ss_pred             hcCcccccccccCCCeeEEEEEeC----CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLS----DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~----~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~l  345 (380)
                      .++|+..+.||+|+||.||+|+..    ++..||||++.........++|.+|+.++.+++||||+++++++...+..++
T Consensus        44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l  123 (373)
T 2qol_A           44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMI  123 (373)
T ss_dssp             GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred             HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEE
Confidence            356888899999999999999873    5778999999754444456789999999999999999999999999999999


Q ss_pred             EeecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      ||||+++|+|.++++.....          .+++.||+|||+++|
T Consensus       124 v~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i  168 (373)
T 2qol_A          124 VTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGY  168 (373)
T ss_dssp             EEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            99999999999999764321          348899999999875

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.65  E-value=8.3e-17  Score=151.76  Aligned_cols=111  Identities=20%  Similarity=0.259  Sum_probs=96.1

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      .++|+..+.||+|+||.||+|.. .+|+.||||++.... .....+.+.+|++++..++||||+++++++...+..++||
T Consensus        14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~   93 (328)
T 3fe3_A           14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIM   93 (328)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence            45788899999999999999998 679999999996432 3334677899999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.+++......         .+++.||+|||+.+|
T Consensus        94 e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~~i  135 (328)
T 3fe3_A           94 EYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQKRI  135 (328)
T ss_dssp             CCCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ECCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            999999999999755433         349999999999876

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.65  E-value=8.4e-17  Score=150.89  Aligned_cols=111  Identities=16%  Similarity=0.227  Sum_probs=92.4

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCC-------
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS-------  341 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~-------  341 (380)
                      .++|+..+.||+|+||.||+|+. .+|+.||||++.........+.+.+|++++.+++|||||++++++.+.+       
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   84 (332)
T 3qd2_B            5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE   84 (332)
T ss_dssp             HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred             hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence            35688889999999999999998 4799999999975444556788999999999999999999999986543       


Q ss_pred             --------------------------------------------------ceeEEeecccCCChhhhcccccc-------
Q 016905          342 --------------------------------------------------ERILVYPFMQNLSVAYRLRVSHK-------  364 (380)
Q Consensus       342 --------------------------------------------------~~~lV~Ey~~~GsL~~~L~~~~~-------  364 (380)
                                                                        ..++||||+++|+|.++++....       
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~  164 (332)
T 3qd2_B           85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHG  164 (332)
T ss_dssp             HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHH
T ss_pred             hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhH
Confidence                                                              27899999999999999975432       


Q ss_pred             -----cceeeeeecceeeecC
Q 016905          365 -----IYTKIISLSSLHCFSL  380 (380)
Q Consensus       365 -----~~~~~~aL~yLH~~~i  380 (380)
                           ..+++.||+|||+.+|
T Consensus       165 ~~~~i~~qi~~aL~~LH~~~i  185 (332)
T 3qd2_B          165 VCLHIFIQIAEAVEFLHSKGL  185 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTE
T ss_pred             HHHHHHHHHHHHHHHHHhCCe
Confidence                 2358899999999875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.64  E-value=1.7e-16  Score=148.65  Aligned_cols=113  Identities=31%  Similarity=0.468  Sum_probs=96.2

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++.+|..|..+++|+.|+|++|.+++.+|. +..+++|++|+|++|+++|.+|..|..+++|+.|||+
T Consensus       198 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  276 (313)
T 1ogq_A          198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS  276 (313)
T ss_dssp             CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred             cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECc
Confidence            477788888888888888888888888888888888877776 7888999999999999999999999999999999999


Q ss_pred             CCcccccCccc--cccccccccCCCccccCCCCCCCC
Q 016905          157 SNNLTGRIPMQ--LFSVATFNFTGTHLICGSSLEQPC  191 (380)
Q Consensus       157 ~N~l~g~~p~~--~~~~~~~~~~gN~~lc~~~~~~~c  191 (380)
                      +|+++|.+|..  +.++..+++.+|+.+|+.+.. +|
T Consensus       277 ~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          277 FNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             SSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             CCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            99999999975  456678889999999997653 45

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.64  E-value=5.5e-17  Score=155.49  Aligned_cols=111  Identities=22%  Similarity=0.348  Sum_probs=94.3

Q ss_pred             hcCcccccccccCCCeeEEEEEe--------CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCC
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL--------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTS  340 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~--------~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~  340 (380)
                      .++|+..+.||+|+||.||+|..        .++..||||++.........+.|.+|++++.++ +||||++++++|..+
T Consensus        80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  159 (370)
T 2psq_A           80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  159 (370)
T ss_dssp             GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred             HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence            46788889999999999999986        235689999997544444567899999999999 899999999999999


Q ss_pred             CceeEEeecccCCChhhhcccccc-------------------------cceeeeeecceeeecC
Q 016905          341 SERILVYPFMQNLSVAYRLRVSHK-------------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       341 ~~~~lV~Ey~~~GsL~~~L~~~~~-------------------------~~~~~~aL~yLH~~~i  380 (380)
                      +..++||||+++|+|.++++....                         ..+++.||+|||+.+|
T Consensus       160 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i  224 (370)
T 2psq_A          160 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKC  224 (370)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            999999999999999999976431                         2358999999999875

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.64  E-value=1.2e-16  Score=148.83  Aligned_cols=110  Identities=15%  Similarity=0.309  Sum_probs=94.7

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .++|...+.||+|+||.||++.. .+++.||+|++.. ......+.|.+|++++.+++||||+++++++..++..++|||
T Consensus         9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~-~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   87 (310)
T 3s95_A            9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIR-FDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITE   87 (310)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESC-CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEecc-CCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEE
Confidence            35677889999999999999998 5689999999853 334457889999999999999999999999999999999999


Q ss_pred             cccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.++++.....          .+++.||+|||+.+|
T Consensus        88 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i  129 (310)
T 3s95_A           88 YIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNI  129 (310)
T ss_dssp             CCTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             ecCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999999763221          348999999999874

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.64  E-value=4.4e-17  Score=156.51  Aligned_cols=113  Identities=28%  Similarity=0.410  Sum_probs=96.2

Q ss_pred             HHhcCcccccccccCCCeeEEEEEeC-CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          268 LATDNFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       268 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      ...++|...+.||+|+||.||+|... +++.||||.+.........+.|.+|+++|.+++|||||+++|++..++..++|
T Consensus       111 ~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv  190 (377)
T 3cbl_A          111 LNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIV  190 (377)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred             EchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEE
Confidence            34567888899999999999999994 78999999997544444456799999999999999999999999999999999


Q ss_pred             eecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.++++.....          .+++.||+|||+++|
T Consensus       191 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i  234 (377)
T 3cbl_A          191 MELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCC  234 (377)
T ss_dssp             EECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            9999999999999754321          348899999999875

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.64  E-value=8.5e-17  Score=151.26  Aligned_cols=111  Identities=15%  Similarity=0.246  Sum_probs=92.4

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .++|+..+.||+|+||.||+|.. .+++.||||++.........+.+.+|+.++..++||||+++++++..++..++|||
T Consensus         6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e   85 (323)
T 3tki_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   85 (323)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence            35788899999999999999998 47899999999643333345678999999999999999999999999999999999


Q ss_pred             cccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.++++.....         .+++.||+|||+.||
T Consensus        86 ~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~gi  126 (323)
T 3tki_A           86 YCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGI  126 (323)
T ss_dssp             CCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             cCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            99999999999865433         348999999999875

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.64  E-value=1e-16  Score=150.86  Aligned_cols=110  Identities=25%  Similarity=0.306  Sum_probs=93.4

Q ss_pred             cCcccccccccCCCeeEEEEEeC----CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLS----DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~----~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      +.|+..+.||+|+||.||+|...    .+..||||++.........+.|.+|++++.+++||||+++++++..++..++|
T Consensus        49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  128 (325)
T 3kul_A           49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIV  128 (325)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEE
T ss_pred             hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEE
Confidence            45777899999999999999983    34569999997544555577899999999999999999999999998899999


Q ss_pred             eecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.++++.....          .+++.||+|||+.+|
T Consensus       129 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~i  172 (325)
T 3kul_A          129 TEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGY  172 (325)
T ss_dssp             EECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             eeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999999999999654221          348899999999875

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.63  E-value=2e-16  Score=151.16  Aligned_cols=112  Identities=18%  Similarity=0.225  Sum_probs=95.7

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCC-----chHHHHHHHHHHHhcCcCCCCccceeeeeCCCc
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSP-----GGEAAFQREVHLISVAIHKNLLQLIGYCTTSSE  342 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-----~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~  342 (380)
                      ..+.|+..+.||+|+||.||++.. .+|+.||+|.+......     ...+.+.+|+.++.+++||||+++++++...+.
T Consensus        10 ~~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~   89 (361)
T 2yab_A           10 VEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTD   89 (361)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE
T ss_pred             hhhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCE
Confidence            346788899999999999999998 56899999999643221     135789999999999999999999999999999


Q ss_pred             eeEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      .++||||+++|+|.+++......         .+++.||+|||+.||
T Consensus        90 ~~lv~e~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~gi  136 (361)
T 2yab_A           90 VVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTKKI  136 (361)
T ss_dssp             EEEEEECCCSCBHHHHHTTCSCCBHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            99999999999999999765443         348999999999875

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.63  E-value=7.3e-17  Score=153.38  Aligned_cols=103  Identities=21%  Similarity=0.376  Sum_probs=87.6

Q ss_pred             eCHHHHHHHhcCcccccccccCCCeeEEEEEe------CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccc
Q 016905          261 FSCRELQLATDNFSESNIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQL  333 (380)
Q Consensus       261 ~~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l  333 (380)
                      +...+++...++|+..+.||+|+||.||+|.+      .+++.||||++.........+.|.+|++++.++ +|||||++
T Consensus        12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~   91 (359)
T 3vhe_A           12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL   91 (359)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence            55667777889999999999999999999984      346899999997544444567899999999999 89999999


Q ss_pred             eeeeeCCCc-eeEEeecccCCChhhhccccc
Q 016905          334 IGYCTTSSE-RILVYPFMQNLSVAYRLRVSH  363 (380)
Q Consensus       334 ~g~~~~~~~-~~lV~Ey~~~GsL~~~L~~~~  363 (380)
                      ++++...+. .++||||+++|+|.++++...
T Consensus        92 ~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~  122 (359)
T 3vhe_A           92 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKR  122 (359)
T ss_dssp             EEEECSTTSCCEEEEECCTTEEHHHHHHTTT
T ss_pred             eeeeecCCCceEEEEEecCCCcHHHHHHhcc
Confidence            999987554 899999999999999997653

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.63  E-value=6.6e-17  Score=152.63  Aligned_cols=115  Identities=26%  Similarity=0.361  Sum_probs=97.5

Q ss_pred             HHHHhcCcccccccccCCCeeEEEEEeC------CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeC
Q 016905          266 LQLATDNFSESNIIGQGGFGKVYKGVLS------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT  339 (380)
Q Consensus       266 l~~~~~~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~  339 (380)
                      +....++|+..+.||+|+||.||+|...      +++.||||++.........+.|.+|+.++.+++||||+++++++..
T Consensus        42 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~  121 (343)
T 1luf_A           42 LEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAV  121 (343)
T ss_dssp             TBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS
T ss_pred             eEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcc
Confidence            3445678999999999999999999983      3479999999754444456789999999999999999999999999


Q ss_pred             CCceeEEeecccCCChhhhcccccc---------------------------------cceeeeeecceeeecC
Q 016905          340 SSERILVYPFMQNLSVAYRLRVSHK---------------------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       340 ~~~~~lV~Ey~~~GsL~~~L~~~~~---------------------------------~~~~~~aL~yLH~~~i  380 (380)
                      ++..++||||+++|+|.++++....                                 ..+++.||+|||+.+|
T Consensus       122 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~i  195 (343)
T 1luf_A          122 GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKF  195 (343)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999999999999999999976321                                 2348899999999876

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.63  E-value=2.5e-16  Score=143.61  Aligned_cols=109  Identities=25%  Similarity=0.360  Sum_probs=94.5

Q ss_pred             hcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      .++|+..+.||+|+||.||+|...++..||+|++...  ....++|.+|++++.+++||||+++++++..++..++||||
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   86 (269)
T 4hcu_A            9 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG--AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEF   86 (269)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTT--SBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred             hhhceeeheecCCCccEEEEEEecCCCeEEEEEeccc--ccCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEe
Confidence            3567888999999999999999988889999999643  23457899999999999999999999999999999999999


Q ss_pred             ccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      +++|+|.++++.....          .+++.||+|||+.+|
T Consensus        87 ~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i  127 (269)
T 4hcu_A           87 MEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACV  127 (269)
T ss_dssp             CTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999999999754322          348899999999875

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.63  E-value=1.9e-16  Score=146.36  Aligned_cols=110  Identities=8%  Similarity=-0.009  Sum_probs=93.9

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC--CchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS--PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      +.|+..+.||+|+||.||+|.. .+++.||||++.....  ....+.|.+|+..+.+++||||+++++++..++..++||
T Consensus        31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  110 (286)
T 3uqc_A           31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA  110 (286)
T ss_dssp             TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence            5688889999999999999998 4589999999974332  223478999999999999999999999999999999999


Q ss_pred             ecccCCChhhhcccccc-------cceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHK-------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~-------~~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.++++....       ..+++.||+|||+.||
T Consensus       111 e~~~g~~L~~~l~~~~~~~~~~~i~~ql~~aL~~lH~~gi  150 (286)
T 3uqc_A          111 EWIRGGSLQEVADTSPSPVGAIRAMQSLAAAADAAHRAGV  150 (286)
T ss_dssp             ECCCEEEHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EecCCCCHHHHHhcCCChHHHHHHHHHHHHHHHHHHHCCC
Confidence            99999999999965321       2458999999999886

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.63  E-value=1.4e-16  Score=158.27  Aligned_cols=111  Identities=24%  Similarity=0.186  Sum_probs=87.9

Q ss_pred             ceeeEecC-CCEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhh-CCcccCeeeccCccccccCCcccc
Q 016905           68 WSHVTCRN-GNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLG-SMTHLQSLNLANNKFSGSIPATWS  145 (380)
Q Consensus        68 w~gv~c~~-~~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~-~l~~L~~l~Ls~N~l~g~iP~~~~  145 (380)
                      +.++.|.. .+|+.|+|++|.+++..|..++.+++|+.|+|++|.|++.+|..+. .+++|++|+|++|+|++..+  +.
T Consensus       111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~  188 (487)
T 3oja_A          111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QV  188 (487)
T ss_dssp             CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CC
T ss_pred             CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cc
Confidence            44444432 2789999999999999898999999999999999999998888886 78999999999999996633  44


Q ss_pred             CCCCCCEEECcCCcccccCccccc---cccccccCCCcc
Q 016905          146 QLSNLKHLDLSSNNLTGRIPMQLF---SVATFNFTGTHL  181 (380)
Q Consensus       146 ~l~~L~~L~ls~N~l~g~~p~~~~---~~~~~~~~gN~~  181 (380)
                      .+++|+.|||++|.|++..|. +.   ++..+++.+|..
T Consensus       189 ~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l  226 (487)
T 3oja_A          189 VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKL  226 (487)
T ss_dssp             CCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCC
T ss_pred             cCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcC
Confidence            688999999999999975553 43   445666777754

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.63  E-value=9.7e-17  Score=153.59  Aligned_cols=111  Identities=26%  Similarity=0.329  Sum_probs=94.7

Q ss_pred             hcCcccccccccCCCeeEEEEEe------CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCce
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSER  343 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~  343 (380)
                      .++|+..+.||+|+||.||+|.+      .++..||||++...........|.+|+.++.+++|||||++++++...+..
T Consensus        70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~  149 (367)
T 3l9p_A           70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR  149 (367)
T ss_dssp             GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence            45688889999999999999995      246789999997544455567899999999999999999999999999999


Q ss_pred             eEEeecccCCChhhhcccccc----------------cceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHK----------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~----------------~~~~~~aL~yLH~~~i  380 (380)
                      ++||||+++|+|.++++..+.                ..+++.||+|||+.||
T Consensus       150 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i  202 (367)
T 3l9p_A          150 FILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHF  202 (367)
T ss_dssp             EEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCCe
Confidence            999999999999999976431                2348899999999876

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.63  E-value=4.9e-17  Score=159.18  Aligned_cols=119  Identities=19%  Similarity=0.287  Sum_probs=99.1

Q ss_pred             CHHHHHHHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc--CCCchHHHHHHHHHHHhcCcCCCCccceeeee
Q 016905          262 SCRELQLATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY--YSPGGEAAFQREVHLISVAIHKNLLQLIGYCT  338 (380)
Q Consensus       262 ~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~--~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~  338 (380)
                      .+.++...+++|+..++||+|+||.||+|+. .+++.||||++...  ......+.+.+|..++..++||||+++++++.
T Consensus        65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~  144 (437)
T 4aw2_A           65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQ  144 (437)
T ss_dssp             HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred             hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence            4556666788999999999999999999998 45889999999631  11222345889999999999999999999999


Q ss_pred             CCCceeEEeecccCCChhhhccccc-cc---------ceeeeeecceeeecC
Q 016905          339 TSSERILVYPFMQNLSVAYRLRVSH-KI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       339 ~~~~~~lV~Ey~~~GsL~~~L~~~~-~~---------~~~~~aL~yLH~~~i  380 (380)
                      +++..++|||||++|+|.++|+... ..         .+++.||+|||+++|
T Consensus       145 ~~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~~gi  196 (437)
T 4aw2_A          145 DDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQLHY  196 (437)
T ss_dssp             CSSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             eCCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999999999999999999997632 22         348999999999875

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.62  E-value=2.3e-16  Score=150.75  Aligned_cols=112  Identities=18%  Similarity=0.213  Sum_probs=96.0

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      ..++|+..+.||+|+||.||++.. .+|+.||+|++.... .....+.+.+|++++.+++||||+++++++..++..++|
T Consensus        27 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv  106 (362)
T 2bdw_A           27 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV  106 (362)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            356788899999999999999998 568999999996432 233457789999999999999999999999999999999


Q ss_pred             eecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.+++......         .+++.||+|||+.+|
T Consensus       107 ~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~~i  149 (362)
T 2bdw_A          107 FDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNGI  149 (362)
T ss_dssp             ECCCCSCBHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999999999998765433         348999999999876

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.62  E-value=2.3e-16  Score=146.37  Aligned_cols=110  Identities=15%  Similarity=0.225  Sum_probs=94.4

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .+.|+..+.||+|+||.||+|.. .+++.||||++.... ....+.+.+|+.++.+++||||+++++++..++..++|||
T Consensus        19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   97 (297)
T 3fxz_A           19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQ-QPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVME   97 (297)
T ss_dssp             GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGG-CSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeeccc-ccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEE
Confidence            45688889999999999999997 678999999986432 3346778999999999999999999999999999999999


Q ss_pred             cccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.+++.....        ..+++.||+|||+.||
T Consensus        98 ~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  137 (297)
T 3fxz_A           98 YLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQV  137 (297)
T ss_dssp             CCTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             CCCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9999999999875422        2348899999999875

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.62  E-value=3.1e-16  Score=145.32  Aligned_cols=111  Identities=20%  Similarity=0.252  Sum_probs=94.6

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      .+.|+..+.||+|+||.||++.. .+++.||+|++....  .....+.|.+|+.++.+++||||+++++++..++..++|
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv   89 (294)
T 4eqm_A           10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV   89 (294)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence            35688889999999999999997 568999999985322  223457899999999999999999999999999999999


Q ss_pred             eecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.+++......         .+++.||+|||+.+|
T Consensus        90 ~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  132 (294)
T 4eqm_A           90 MEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDMRI  132 (294)
T ss_dssp             EECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            9999999999999765432         348999999999875

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.62  E-value=6.7e-17  Score=156.95  Aligned_cols=118  Identities=19%  Similarity=0.288  Sum_probs=97.8

Q ss_pred             HHHHHHHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc--CCCchHHHHHHHHHHHhcCcCCCCccceeeeeC
Q 016905          263 CRELQLATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY--YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT  339 (380)
Q Consensus       263 ~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~--~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~  339 (380)
                      +.++....++|+..++||+|+||.||+++. .+++.||+|++...  ......+.+.+|+.++..++|||||++++++.+
T Consensus        61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~  140 (410)
T 3v8s_A           61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  140 (410)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             HHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE
Confidence            344555678899999999999999999998 56899999998531  112234568899999999999999999999999


Q ss_pred             CCceeEEeecccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          340 SSERILVYPFMQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       340 ~~~~~lV~Ey~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      ++..++|||||++|+|.++++....        ..+++.||+|||++||
T Consensus       141 ~~~~~lV~E~~~gg~L~~~l~~~~~~e~~~~~~~~qi~~aL~~LH~~gi  189 (410)
T 3v8s_A          141 DRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGF  189 (410)
T ss_dssp             SSEEEEEECCCTTEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             CCEEEEEEeCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999999999999999999975432        1348999999999875

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.62  E-value=6.3e-17  Score=153.01  Aligned_cols=115  Identities=23%  Similarity=0.389  Sum_probs=94.3

Q ss_pred             HHHHhcCcccccccccCCCeeEEEEEe------CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeee
Q 016905          266 LQLATDNFSESNIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCT  338 (380)
Q Consensus       266 l~~~~~~~~~~~~lg~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~  338 (380)
                      ++...++|+..+.||+|+||.||+|..      .++..||||++.........+.+.+|+.++.++ +||||+++++++.
T Consensus        40 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~  119 (344)
T 1rjb_A           40 WEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACT  119 (344)
T ss_dssp             GBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             cccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEe
Confidence            344567889999999999999999996      245689999997544444567899999999999 8999999999999


Q ss_pred             CCCceeEEeecccCCChhhhcccccc--------------------------------cceeeeeecceeeecC
Q 016905          339 TSSERILVYPFMQNLSVAYRLRVSHK--------------------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       339 ~~~~~~lV~Ey~~~GsL~~~L~~~~~--------------------------------~~~~~~aL~yLH~~~i  380 (380)
                      ..+..++||||+++|+|.++++....                                ..+++.||+|||+.||
T Consensus       120 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i  193 (344)
T 1rjb_A          120 LSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSC  193 (344)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             eCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999999999999999976532                                1348899999999875

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.62  E-value=3.5e-16  Score=147.17  Aligned_cols=111  Identities=18%  Similarity=0.238  Sum_probs=94.4

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCC-----chHHHHHHHHHHHhcCcCCCCccceeeeeCCCce
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSP-----GGEAAFQREVHLISVAIHKNLLQLIGYCTTSSER  343 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-----~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~  343 (380)
                      .+.|+..+.||+|+||.||++.. .+|+.||+|.+......     ...+.+.+|+.++.+++||||+++++++..++..
T Consensus        10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~   89 (326)
T 2y0a_A           10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV   89 (326)
T ss_dssp             HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEE
Confidence            34588889999999999999998 56899999999632211     2367899999999999999999999999999999


Q ss_pred             eEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ++||||+++|+|.+++......         .+++.||+|||+.+|
T Consensus        90 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~i  135 (326)
T 2y0a_A           90 ILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQI  135 (326)
T ss_dssp             EEEEECCCSCBHHHHHTTSSCCBHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEEEEcCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999999999999999765433         348999999998875

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.62  E-value=2.2e-16  Score=149.35  Aligned_cols=111  Identities=19%  Similarity=0.190  Sum_probs=94.9

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      .++|+..++||+|+||.||++.. .+|+.||+|++....  .....+.+.+|++++.+++||||+++++++...+..++|
T Consensus         4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv   83 (337)
T 1o6l_A            4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence            35788899999999999999998 569999999996321  223467789999999999999999999999999999999


Q ss_pred             eecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.+++...+..         .+++.||+|||++||
T Consensus        84 ~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i  126 (337)
T 1o6l_A           84 MEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDV  126 (337)
T ss_dssp             EECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999999999999754432         348999999999886

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.61  E-value=3.6e-16  Score=146.34  Aligned_cols=110  Identities=18%  Similarity=0.232  Sum_probs=93.0

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCC--ceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS--ERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~--~~~lV~  347 (380)
                      +.|...++||+|+||.||+|.. .+++.||||++.........+.+.+|++++.+++||||+++++++...+  ..++||
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   88 (319)
T 4euu_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (319)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEE
Confidence            4577889999999999999998 4589999999975433445678899999999999999999999987655  679999


Q ss_pred             ecccCCChhhhccccccc------------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI------------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~------------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.++++.....            .+++.||+|||+.+|
T Consensus        89 e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~i  133 (319)
T 4euu_A           89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGI  133 (319)
T ss_dssp             ECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             eCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            999999999999864331            348999999999875

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.61  E-value=1e-15  Score=130.38  Aligned_cols=99  Identities=22%  Similarity=0.286  Sum_probs=70.3

Q ss_pred             CceeeEecCC-----------CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCcc
Q 016905           67 SWSHVTCRNG-----------NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK  135 (380)
Q Consensus        67 ~w~gv~c~~~-----------~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~  135 (380)
                      .|+.+.|++.           +++.|+|++|.+++..|..|.++++|++|+|++|+|++..|..|..+++|++|+|++|+
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            5777777643           56677777777777777777777777777777777776555566777777777777777


Q ss_pred             ccccCCccccCCCCCCEEECcCCcccccCc
Q 016905          136 FSGSIPATWSQLSNLKHLDLSSNNLTGRIP  165 (380)
Q Consensus       136 l~g~iP~~~~~l~~L~~L~ls~N~l~g~~p  165 (380)
                      |++..|..|..+++|+.|+|++|.+++..+
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           90 LKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             cCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            775555567777777777777777765543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.61  E-value=1.7e-15  Score=132.98  Aligned_cols=115  Identities=23%  Similarity=0.289  Sum_probs=96.4

Q ss_pred             CceeeEecCC-----------CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCcc
Q 016905           67 SWSHVTCRNG-----------NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK  135 (380)
Q Consensus        67 ~w~gv~c~~~-----------~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~  135 (380)
                      .|.++.|+..           +++.|+|++|.+++..+..|.++++|++|+|++|++++..+..+..+++|++|+|++|+
T Consensus         8 ~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A            8 SGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             ETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            8999999854           68999999999997777778999999999999999997666678899999999999999


Q ss_pred             ccccCCccccCCCCCCEEECcCCcccccCcccc---ccccccccCCCcc
Q 016905          136 FSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQL---FSVATFNFTGTHL  181 (380)
Q Consensus       136 l~g~iP~~~~~l~~L~~L~ls~N~l~g~~p~~~---~~~~~~~~~gN~~  181 (380)
                      +++..|..|..+++|+.|++++|++++..|..+   .++..+++.+|..
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  136 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL  136 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc
Confidence            996666678999999999999999997666444   3456667777754

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.61  E-value=1.2e-16  Score=150.38  Aligned_cols=115  Identities=22%  Similarity=0.302  Sum_probs=96.2

Q ss_pred             HHHHhcCcccccccccCCCeeEEEEEeC-CC-----cEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeee
Q 016905          266 LQLATDNFSESNIIGQGGFGKVYKGVLS-DN-----TKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCT  338 (380)
Q Consensus       266 l~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~g-----~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~  338 (380)
                      ++...++|+..+.||+|+||.||+|... ++     ..||+|.+.........+.+.+|++++.++ +||||+++++++.
T Consensus        41 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~  120 (333)
T 2i1m_A           41 WEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACT  120 (333)
T ss_dssp             GBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             ccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEe
Confidence            3445678999999999999999999973 22     489999997544444567899999999999 8999999999999


Q ss_pred             CCCceeEEeecccCCChhhhcccccc-----------------------cceeeeeecceeeecC
Q 016905          339 TSSERILVYPFMQNLSVAYRLRVSHK-----------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       339 ~~~~~~lV~Ey~~~GsL~~~L~~~~~-----------------------~~~~~~aL~yLH~~~i  380 (380)
                      ..+..++||||+++|+|.++++....                       ..+++.||+|||+.+|
T Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  185 (333)
T 2i1m_A          121 HGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNC  185 (333)
T ss_dssp             SSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             cCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999975421                       1358999999998875

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.61  E-value=5.9e-16  Score=142.13  Aligned_cols=110  Identities=22%  Similarity=0.300  Sum_probs=92.1

Q ss_pred             HhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      ..++|+..+.||+|+||.||++...++..||||++...  ....++|.+|++++.+++||||+++++++..++..++|||
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   99 (283)
T 3gen_A           22 DPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG--SMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITE   99 (283)
T ss_dssp             CGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTT--SBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEC
T ss_pred             CHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCC--CCCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEe
Confidence            45678888999999999999999988889999999643  2245789999999999999999999999999999999999


Q ss_pred             cccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.++++.....          .+++.||+|||+.+|
T Consensus       100 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i  141 (283)
T 3gen_A          100 YMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQF  141 (283)
T ss_dssp             CCTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            99999999999763221          348899999999875

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.61  E-value=3.5e-16  Score=146.15  Aligned_cols=115  Identities=23%  Similarity=0.302  Sum_probs=96.2

Q ss_pred             HHHHHHhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCc
Q 016905          264 RELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSE  342 (380)
Q Consensus       264 ~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~  342 (380)
                      .++....++|+..+.||+|+||.||+|.. +|+.||||++.... .....+.|.+|++++.+++||||+++++++...+.
T Consensus        30 ~~~~i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~  108 (309)
T 3p86_A           30 DDMDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPN  108 (309)
T ss_dssp             --CBCCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTC
T ss_pred             ccccCChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCc
Confidence            34444567888899999999999999987 78899999996432 23345679999999999999999999999999999


Q ss_pred             eeEEeecccCCChhhhcccccc------------cceeeeeecceeeec
Q 016905          343 RILVYPFMQNLSVAYRLRVSHK------------IYTKIISLSSLHCFS  379 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~------------~~~~~~aL~yLH~~~  379 (380)
                      .++||||+++|+|.++++....            ..+++.||+|||+.|
T Consensus       109 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~  157 (309)
T 3p86_A          109 LSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRN  157 (309)
T ss_dssp             CEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             eEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999976432            135899999999987

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.61  E-value=2.5e-16  Score=146.65  Aligned_cols=112  Identities=26%  Similarity=0.372  Sum_probs=95.4

Q ss_pred             HhcCcccccccccCCCeeEEEEEe------CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCc
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSE  342 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~  342 (380)
                      ..++|...+.||+|+||.||+|..      .++..||||++.........+.+.+|++++.+++||||+++++++...+.
T Consensus        21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~  100 (314)
T 2ivs_A           21 PRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGP  100 (314)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred             chhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCc
Confidence            456788889999999999999986      24579999999754444456789999999999999999999999999999


Q ss_pred             eeEEeecccCCChhhhcccccc---------------------------------cceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHK---------------------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~---------------------------------~~~~~~aL~yLH~~~i  380 (380)
                      .++||||+++|+|.++++....                                 ..+++.||+|||+.+|
T Consensus       101 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i  171 (314)
T 2ivs_A          101 LLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKL  171 (314)
T ss_dssp             CEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             eEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCCC
Confidence            9999999999999999976432                                 1348999999999875

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.61  E-value=9.2e-17  Score=156.08  Aligned_cols=120  Identities=18%  Similarity=0.242  Sum_probs=99.9

Q ss_pred             eCHHHHHHHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeee
Q 016905          261 FSCRELQLATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYC  337 (380)
Q Consensus       261 ~~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~  337 (380)
                      +.+++.....++|+..++||+|+||.||+++. .+|+.||||++....  .....+.+.+|.+++.+++||||+++++++
T Consensus        51 ~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~  130 (412)
T 2vd5_A           51 VRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAF  130 (412)
T ss_dssp             HHHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEE
T ss_pred             hhhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEE
Confidence            34556666778999999999999999999998 579999999995321  122345588999999999999999999999


Q ss_pred             eCCCceeEEeecccCCChhhhcccccc-c---------ceeeeeecceeeecC
Q 016905          338 TTSSERILVYPFMQNLSVAYRLRVSHK-I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       338 ~~~~~~~lV~Ey~~~GsL~~~L~~~~~-~---------~~~~~aL~yLH~~~i  380 (380)
                      ...+..++|||||++|+|.++++.... .         .+++.||+|||+++|
T Consensus       131 ~~~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~~gi  183 (412)
T 2vd5_A          131 QDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRLGY  183 (412)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             eeCCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            999999999999999999999976432 1         348999999999875

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.60  E-value=5.4e-16  Score=148.07  Aligned_cols=109  Identities=17%  Similarity=0.177  Sum_probs=94.3

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .++|+..+.||+|+||.||++.. .+++.||||++....  ...+.+.+|+.++.+++||||+++++++..++..++|||
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e   96 (361)
T 3uc3_A           19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGA--AIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIME   96 (361)
T ss_dssp             TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESST--TSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCc--cccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEE
Confidence            45788899999999999999998 478999999996432  234678999999999999999999999999999999999


Q ss_pred             cccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.+++......         .+++.||+|||+.||
T Consensus        97 ~~~~~~L~~~l~~~~~~~~~~~~~i~~ql~~~L~~LH~~~i  137 (361)
T 3uc3_A           97 YASGGELYERICNAGRFSEDEARFFFQQLLSGVSYCHSMQI  137 (361)
T ss_dssp             CCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            99999999998754433         349999999999876

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.60  E-value=6.5e-16  Score=145.11  Aligned_cols=109  Identities=20%  Similarity=0.357  Sum_probs=93.9

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .++|+..+.||+|+||.||++.. .+++.+|+|.+..  .......+.+|++++..++||||+++++++...+..++|||
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~--~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e   81 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKV--KGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFE   81 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC--CTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEec--CcccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEE
Confidence            45788899999999999999998 5688999999853  23345678999999999999999999999999999999999


Q ss_pred             cccCCChhhhcccccc-c---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK-I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~-~---------~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.+++..... .         .+++.||+|||++||
T Consensus        82 ~~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~gi  123 (321)
T 1tki_A           82 FISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNI  123 (321)
T ss_dssp             CCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             eCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence            9999999999976432 1         348999999999875

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.60  E-value=3.5e-16  Score=142.30  Aligned_cols=109  Identities=18%  Similarity=0.277  Sum_probs=92.5

Q ss_pred             hcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCC--CceeEE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS--SERILV  346 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~--~~~~lV  346 (380)
                      .++|+..+.||+|+||.||+|+. +++.||||++.... .....+.|.+|+.++.+++||||+++++++...  +..++|
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv   87 (271)
T 3kmu_A            9 FKQLNFLTKLNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLI   87 (271)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEE
T ss_pred             HHHhHHHHHhcCCCcceEEEEEE-CCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEee
Confidence            34677889999999999999998 58899999996432 233467899999999999999999999999876  678999


Q ss_pred             eecccCCChhhhcccccc--c---------ceeeeeecceeeec
Q 016905          347 YPFMQNLSVAYRLRVSHK--I---------YTKIISLSSLHCFS  379 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~--~---------~~~~~aL~yLH~~~  379 (380)
                      |||+++|+|.++++....  .         .+++.||+|||+.+
T Consensus        88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~  131 (271)
T 3kmu_A           88 THWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLE  131 (271)
T ss_dssp             EECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             ecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999986543  1         34889999999877

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.60  E-value=3.9e-16  Score=146.49  Aligned_cols=111  Identities=17%  Similarity=0.248  Sum_probs=94.4

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      .++|+..+.||+|+||.||+++. .+|+.||+|++....  .....+.+.+|+.++..++||||+++++++...+..++|
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv   84 (318)
T 1fot_A            5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI   84 (318)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence            35688899999999999999998 579999999996321  123456788999999999999999999999999999999


Q ss_pred             eecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.++++.....         .+++.||+|||++||
T Consensus        85 ~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i  127 (318)
T 1fot_A           85 MDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKDI  127 (318)
T ss_dssp             ECCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred             EeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            9999999999999765432         348999999999875

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.60  E-value=4.7e-16  Score=143.26  Aligned_cols=111  Identities=15%  Similarity=0.185  Sum_probs=95.3

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .+.|...+.||+|+||.||++.. .++..+|+|++.........+.+.+|++++.+++||||+++++++...+..++|||
T Consensus        21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  100 (285)
T 3is5_A           21 DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVME  100 (285)
T ss_dssp             HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             hhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEE
Confidence            35678889999999999999998 56899999999755445557889999999999999999999999999999999999


Q ss_pred             cccCCChhhhccccc----c---------cceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSH----K---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~----~---------~~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.+++....    .         ..+++.||+|||+.+|
T Consensus       101 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~i  145 (285)
T 3is5_A          101 TCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQHV  145 (285)
T ss_dssp             CCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            999999999985421    1         1348899999999875

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.60  E-value=5.6e-16  Score=141.13  Aligned_cols=109  Identities=22%  Similarity=0.321  Sum_probs=94.3

Q ss_pred             hcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      .++|+..+.||+|+||.||+|...++..||||++...  ....+++.+|++++.+++||||+++++++..++..++||||
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (268)
T 3sxs_A            7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEG--SMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEY   84 (268)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBT--TBCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred             hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccC--CCcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEc
Confidence            4568888999999999999999988889999999642  22457799999999999999999999999999999999999


Q ss_pred             ccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      +++|+|.++++....          ..+++.||+|||+.+|
T Consensus        85 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i  125 (268)
T 3sxs_A           85 ISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQF  125 (268)
T ss_dssp             CTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             cCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            999999999976433          1348899999998874

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.59  E-value=2.7e-16  Score=148.64  Aligned_cols=96  Identities=20%  Similarity=0.249  Sum_probs=83.0

Q ss_pred             HHHHHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc----CCCchHHHHHHHHHHHhcCcCCCCccceeeeeC
Q 016905          265 ELQLATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY----YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT  339 (380)
Q Consensus       265 ~l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~----~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~  339 (380)
                      ++....++|+..+.||+|+||.||+|.. .++..||+|++...    ......+.+.+|++++.+++||||+++++++..
T Consensus        20 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~   99 (345)
T 3hko_A           20 SLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYED   99 (345)
T ss_dssp             CHHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             hhhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhcc
Confidence            3455677899999999999999999998 56889999998632    133456789999999999999999999999999


Q ss_pred             CCceeEEeecccCCChhhhcc
Q 016905          340 SSERILVYPFMQNLSVAYRLR  360 (380)
Q Consensus       340 ~~~~~lV~Ey~~~GsL~~~L~  360 (380)
                      .+..++||||+++|+|.+++.
T Consensus       100 ~~~~~lv~e~~~gg~L~~~l~  120 (345)
T 3hko_A          100 EQYICLVMELCHGGHLLDKLN  120 (345)
T ss_dssp             SSEEEEEEECCCSCBHHHHEE
T ss_pred             CCeEEEEEeCCCCCcHHHHHH
Confidence            999999999999999999985

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.59  E-value=5.6e-16  Score=152.51  Aligned_cols=113  Identities=19%  Similarity=0.266  Sum_probs=96.1

Q ss_pred             HHHHHhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCcee
Q 016905          265 ELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       265 ~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~  344 (380)
                      +++...++|+..+.||+|+||.||+|.+.++..||||++...  ....+.|.+|+++|.+++|||||++++++. .+..+
T Consensus       182 ~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~  258 (454)
T 1qcf_A          182 AWEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG--SMSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIY  258 (454)
T ss_dssp             CSBCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTT--SBCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCE
T ss_pred             ceeechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCC--CccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccE
Confidence            344566788889999999999999999988899999999642  235788999999999999999999999986 56789


Q ss_pred             EEeecccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      +|||||++|+|.++|+....           ..+++.||+|||+++|
T Consensus       259 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i  305 (454)
T 1qcf_A          259 IITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNY  305 (454)
T ss_dssp             EEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999999999975321           2358999999999875

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.59  E-value=4.5e-16  Score=154.85  Aligned_cols=111  Identities=24%  Similarity=0.385  Sum_probs=95.3

Q ss_pred             HHhcCcccccccccCCCeeEEEEEeC-CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          268 LATDNFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       268 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      ...++|+..+.||+|+||.||+|++. ++..||||.+...  ....++|.+|+++|.+++|||||+++++|...+..++|
T Consensus       217 ~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv  294 (495)
T 1opk_A          217 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED--TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII  294 (495)
T ss_dssp             CCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSS--SSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred             cCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCc--ccchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEE
Confidence            34567888999999999999999984 4889999999643  23467899999999999999999999999999999999


Q ss_pred             eecccCCChhhhcccccc--c---------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHK--I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~--~---------~~~~~aL~yLH~~~i  380 (380)
                      ||||++|+|.++|+....  .         .+++.||+|||+++|
T Consensus       295 ~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~i  339 (495)
T 1opk_A          295 TEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNF  339 (495)
T ss_dssp             EECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999999999999975322  1         358999999999875

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.59  E-value=1e-16  Score=149.98  Aligned_cols=120  Identities=21%  Similarity=0.323  Sum_probs=99.8

Q ss_pred             eCHHHHHHHhcCcccccccccCCCeeEEEEEeC------CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccce
Q 016905          261 FSCRELQLATDNFSESNIIGQGGFGKVYKGVLS------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLI  334 (380)
Q Consensus       261 ~~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~  334 (380)
                      +..++++...++|+..+.||+|+||.||+|+..      +++.||||.+...........|.+|++++.+++||||++++
T Consensus        15 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~   94 (322)
T 1p4o_A           15 YVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLL   94 (322)
T ss_dssp             CCCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEE
T ss_pred             cChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeE
Confidence            334455556788999999999999999999863      36789999997544444566799999999999999999999


Q ss_pred             eeeeCCCceeEEeecccCCChhhhcccccc-------------------cceeeeeecceeeecC
Q 016905          335 GYCTTSSERILVYPFMQNLSVAYRLRVSHK-------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       335 g~~~~~~~~~lV~Ey~~~GsL~~~L~~~~~-------------------~~~~~~aL~yLH~~~i  380 (380)
                      +++...+..++||||+++|+|.++++..+.                   ..+++.||+|||+.||
T Consensus        95 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i  159 (322)
T 1p4o_A           95 GVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKF  159 (322)
T ss_dssp             EEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCC
Confidence            999999999999999999999999975321                   2348899999999875

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.59  E-value=6.7e-16  Score=141.03  Aligned_cols=111  Identities=15%  Similarity=0.246  Sum_probs=95.8

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .++|+..+.||+|+||.||+|.. .+++.||||++.........+.+.+|+.++.+++||||+++++++..++..++|||
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   85 (276)
T 2yex_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   85 (276)
T ss_dssp             HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEE
Confidence            35688889999999999999998 46899999999644444456889999999999999999999999999999999999


Q ss_pred             cccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.+++......         .+++.||+|||+.+|
T Consensus        86 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  126 (276)
T 2yex_A           86 YCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGI  126 (276)
T ss_dssp             CCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             ecCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            99999999999764333         348999999998874

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.59  E-value=6.8e-16  Score=146.52  Aligned_cols=110  Identities=21%  Similarity=0.275  Sum_probs=93.5

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeEE
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      ++|+..+.||+|+||.||+++. .+++.||+|++....  .....+.+.+|..++.++ +||||+++++++...+..++|
T Consensus         9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv   88 (345)
T 3a8x_A            9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV   88 (345)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence            5688889999999999999998 568999999996432  223356688999999988 899999999999999999999


Q ss_pred             eecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.+++......         .+++.||+|||+++|
T Consensus        89 ~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~~i  131 (345)
T 3a8x_A           89 IEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGI  131 (345)
T ss_dssp             ECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            9999999999999764433         348999999999876

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.59  E-value=4.1e-16  Score=152.97  Aligned_cols=112  Identities=13%  Similarity=0.194  Sum_probs=94.0

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      ..++|+..+.||+|+||.||++.. .+|+.+|+|++.... .....+.+.+|++++.+++|||||++++++..++..++|
T Consensus         9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv   88 (444)
T 3soa_A            9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLI   88 (444)
T ss_dssp             HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEE
T ss_pred             ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEE
Confidence            356788899999999999999987 678999999996432 223456789999999999999999999999999999999


Q ss_pred             eecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.+++......         .+++.||+|||+.||
T Consensus        89 ~E~~~gg~L~~~i~~~~~~~e~~~~~i~~qil~aL~~lH~~gi  131 (444)
T 3soa_A           89 FDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQMGV  131 (444)
T ss_dssp             ECCCBCCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            9999999999998765443         348999999999886

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.59  E-value=3.4e-15  Score=129.60  Aligned_cols=110  Identities=21%  Similarity=0.392  Sum_probs=96.4

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++..|..|.++++|++|+|++|+|++..|..|..+++|++|+|++|+|++.+|..|..+++|+.|+|+
T Consensus        55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (192)
T 1w8a_A           55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCcccc-cc-ccccccCCCccccCCC
Q 016905          157 SNNLTGRIPMQL-FS-VATFNFTGTHLICGSS  186 (380)
Q Consensus       157 ~N~l~g~~p~~~-~~-~~~~~~~gN~~lc~~~  186 (380)
                      +|.+++..+... .. +....+.++...|..|
T Consensus       135 ~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          135 SNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             TCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             CCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence            999999877422 11 2333455666667654

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.59  E-value=6.7e-16  Score=144.24  Aligned_cols=110  Identities=24%  Similarity=0.371  Sum_probs=91.5

Q ss_pred             hcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .++|+..+.||+|+||.||+|...+|+.||+|++.... .....+.+.+|++++.+++||||+++++++..++..++|||
T Consensus        20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   99 (311)
T 3niz_A           20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFE   99 (311)
T ss_dssp             SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEE
T ss_pred             HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEc
Confidence            45688899999999999999999889999999996332 23345788999999999999999999999999999999999


Q ss_pred             cccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      |++ |+|.+++.....          ..+++.||+|||+.||
T Consensus       100 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i  140 (311)
T 3niz_A          100 FME-KDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHRI  140 (311)
T ss_dssp             CCS-EEHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             CCC-CCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            998 588888865433          2348999999999875

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.59  E-value=4.9e-16  Score=146.23  Aligned_cols=111  Identities=19%  Similarity=0.281  Sum_probs=88.6

Q ss_pred             hcCcccccccccCCCeeEEEEEe----CCCcEEEEEEecccC---CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCc
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL----SDNTKVAVKRLQDYY---SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSE  342 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~----~~g~~vavK~l~~~~---~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~  342 (380)
                      .++|+..+.||+|+||.||++..    .+++.||+|++....   .......+.+|++++.+++||||+++++++...+.
T Consensus        16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~   95 (327)
T 3a62_A           16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK   95 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred             HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence            45788899999999999999987    478999999996432   12235668899999999999999999999999999


Q ss_pred             eeEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      .++||||+++|+|.+++......         .+++.||+|||+.||
T Consensus        96 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~~i  142 (327)
T 3a62_A           96 LYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGI  142 (327)
T ss_dssp             EEEEEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEEeCCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            99999999999999999754432         348999999999876

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.59  E-value=5.8e-16  Score=149.11  Aligned_cols=111  Identities=18%  Similarity=0.175  Sum_probs=94.3

Q ss_pred             hcCcccccccccC--CCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeE
Q 016905          270 TDNFSESNIIGQG--GFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       270 ~~~~~~~~~lg~G--~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~l  345 (380)
                      .++|+..+.||+|  +||.||+|.. .+++.||||++.... .....+.+.+|++++.+++|||||++++++..++..++
T Consensus        24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l  103 (389)
T 3gni_B           24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV  103 (389)
T ss_dssp             GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEE
Confidence            4567888999999  9999999998 479999999996432 23345778899999999999999999999999999999


Q ss_pred             EeecccCCChhhhcccc--ccc---------ceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVS--HKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~--~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |||||++|+|.+++...  ...         .+++.||+|||+.+|
T Consensus       104 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i  149 (389)
T 3gni_B          104 VTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMGY  149 (389)
T ss_dssp             EEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            99999999999999754  211         348999999999875

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.59  E-value=5e-16  Score=147.70  Aligned_cols=110  Identities=16%  Similarity=0.283  Sum_probs=92.6

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc----CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeE
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY----YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~----~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~l  345 (380)
                      +.|+..+.||+|+||.||+|.. .+|+.||||++...    ......+.+.+|++++..++||||+++++++..++..++
T Consensus        24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l  103 (351)
T 3c0i_A           24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYM  103 (351)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence            4688889999999999999998 56899999998521    112246789999999999999999999999999999999


Q ss_pred             EeecccCCChhhhcccccc-------------cceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHK-------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~-------------~~~~~~aL~yLH~~~i  380 (380)
                      ||||+++|+|.+++.....             ..+++.||+|||+.+|
T Consensus       104 v~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i  151 (351)
T 3c0i_A          104 VFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNNI  151 (351)
T ss_dssp             EEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            9999999999988764321             1358999999999875

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.59  E-value=4.9e-16  Score=146.45  Aligned_cols=112  Identities=21%  Similarity=0.353  Sum_probs=94.0

Q ss_pred             HhcCcccccccccCCCeeEEEEEe--------CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeC
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL--------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTT  339 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~--------~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~  339 (380)
                      ..++|+..+.||+|+||.||+|..        .++..||||++.........+.+.+|++++.++ +||||+++++++..
T Consensus        33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~  112 (334)
T 2pvf_A           33 PRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ  112 (334)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             CHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEcc
Confidence            356788899999999999999986        246789999997544444567899999999999 89999999999999


Q ss_pred             CCceeEEeecccCCChhhhcccccc-------------------------cceeeeeecceeeecC
Q 016905          340 SSERILVYPFMQNLSVAYRLRVSHK-------------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       340 ~~~~~lV~Ey~~~GsL~~~L~~~~~-------------------------~~~~~~aL~yLH~~~i  380 (380)
                      ++..++||||+++|+|.++++....                         ..+++.||+|||+.+|
T Consensus       113 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i  178 (334)
T 2pvf_A          113 DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKC  178 (334)
T ss_dssp             SSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             CCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999999999999999999976432                         1348899999998875

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.59  E-value=6.6e-16  Score=142.17  Aligned_cols=110  Identities=25%  Similarity=0.336  Sum_probs=93.1

Q ss_pred             hcCcccccccccCCCeeEEEEEeC-CC-------cEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCC
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLS-DN-------TKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS  341 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g-------~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~  341 (380)
                      .++|...+.||+|+||.||+|... ++       ..||+|.+... .....+.|.+|++++.+++||||+++++++..++
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   85 (289)
T 4fvq_A            7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKA-HRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGD   85 (289)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGG-GGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTT
T ss_pred             hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccc-cHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCC
Confidence            356778899999999999999873 33       57999998542 3345678999999999999999999999999999


Q ss_pred             ceeEEeecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          342 ERILVYPFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       342 ~~~lV~Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      ..++||||+++|+|.++++....          ..+++.||+|||+.+|
T Consensus        86 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~i  134 (289)
T 4fvq_A           86 ENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEENTL  134 (289)
T ss_dssp             CCEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhCCe
Confidence            99999999999999999976543          2348999999999875

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.59  E-value=4.7e-16  Score=149.68  Aligned_cols=110  Identities=18%  Similarity=0.239  Sum_probs=94.4

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|+..++||+|+||.||++.. .+++.||+|++....  .....+.+.+|++++.+++|||||++++++...+..++||
T Consensus        15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~   94 (384)
T 4fr4_A           15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV   94 (384)
T ss_dssp             GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence            5688899999999999999998 568899999986321  2234678899999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.++++.....         .+++.||+|||+.||
T Consensus        95 e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~gi  136 (384)
T 4fr4_A           95 DLLLGGDLRYHLQQNVHFKEETVKLFICELVMALDYLQNQRI  136 (384)
T ss_dssp             CCCTTEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             ecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            999999999999865433         348999999999875

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.59  E-value=7.9e-16  Score=148.74  Aligned_cols=110  Identities=18%  Similarity=0.232  Sum_probs=93.1

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCC--ceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS--ERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~--~~~lV~  347 (380)
                      +.|...++||+|+||.||+|.. .+|+.||||++.........+.+.+|++++.+++||||+++++++...+  ..++||
T Consensus         9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~   88 (396)
T 4eut_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (396)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEE
Confidence            4577889999999999999998 4589999999975433445678899999999999999999999998755  679999


Q ss_pred             ecccCCChhhhccccccc------------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI------------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~------------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.++++.....            .+++.||+|||+.+|
T Consensus        89 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i  133 (396)
T 4eut_A           89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGI  133 (396)
T ss_dssp             CCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             ecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            999999999999864331            348999999999875

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.59  E-value=6.4e-16  Score=148.27  Aligned_cols=106  Identities=20%  Similarity=0.289  Sum_probs=85.3

Q ss_pred             ccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccC
Q 016905          274 SESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQN  352 (380)
Q Consensus       274 ~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~  352 (380)
                      ...++||+|+||.||+|.. .+|+.||+|++... .....+.|.+|++++.+++||||+++++++...+..++||||+++
T Consensus        92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~  170 (373)
T 2x4f_A           92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTR-GMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDG  170 (373)
T ss_dssp             EEEEECC-----CEEEEEETTTCCEEEEEEEECC-SHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred             ecceEEecCcCEEEEEEEEcCCCcEEEEEEEccc-ccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCC
Confidence            3457899999999999998 56899999999642 223567899999999999999999999999999999999999999


Q ss_pred             CChhhhcccccc----------cceeeeeecceeeecC
Q 016905          353 LSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       353 GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      |+|.+++.....          ..+++.||+|||+.+|
T Consensus       171 ~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i  208 (373)
T 2x4f_A          171 GELFDRIIDESYNLTELDTILFMKQICEGIRHMHQMYI  208 (373)
T ss_dssp             CEEHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            999998865432          1358999999999875

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.59  E-value=1.1e-15  Score=138.89  Aligned_cols=109  Identities=25%  Similarity=0.339  Sum_probs=94.3

Q ss_pred             hcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      .++|+..+.||+|+||.||++...++..||+|++...  ....+.+.+|++++.+++||||+++++++..++..++||||
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (267)
T 3t9t_A            7 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG--AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEF   84 (267)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTT--TBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECC
T ss_pred             hhheeeeeEecCCCceeEEEEEecCCCeEEEEEcccc--CCCHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeC
Confidence            3567788999999999999999988889999999643  22357899999999999999999999999999999999999


Q ss_pred             ccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      +++|+|.++++.....          .+++.||+|||+.+|
T Consensus        85 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  125 (267)
T 3t9t_A           85 MEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACV  125 (267)
T ss_dssp             CTTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9999999999764321          348899999999875

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.58  E-value=7.1e-16  Score=146.54  Aligned_cols=109  Identities=18%  Similarity=0.209  Sum_probs=87.9

Q ss_pred             HhcCcccccccccCCCeeEEEEEeC-CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ..+.|+..+.||+|+||.||+|... +++.||||++....   ..+.+.+|++++.+++||||+++++++..++..++||
T Consensus        51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~  127 (349)
T 2w4o_A           51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV---DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVL  127 (349)
T ss_dssp             GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC-------------CHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch---hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEE
Confidence            3567888999999999999999984 58899999996422   3467889999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.+++......         .+++.||+|||+.+|
T Consensus       128 e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~LH~~~i  169 (349)
T 2w4o_A          128 ELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHENGI  169 (349)
T ss_dssp             CCCCSCBHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            999999999999765433         348999999999875

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.58  E-value=5.6e-16  Score=147.58  Aligned_cols=112  Identities=25%  Similarity=0.318  Sum_probs=94.2

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCcee
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~  344 (380)
                      ..++|+..++||+|+||.||+++. .+++.||||++....  .....+.+.+|.+++..+ +||||+++++++...+..+
T Consensus        21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~  100 (353)
T 3txo_A           21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF  100 (353)
T ss_dssp             --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence            456899999999999999999998 568999999996321  223456788999999988 7999999999999999999


Q ss_pred             EEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +||||+++|+|.++++.....         .+++.||+|||++||
T Consensus       101 lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~gi  145 (353)
T 3txo_A          101 FVMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLHDKGI  145 (353)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence            999999999999999765433         348999999999886

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.58  E-value=1.1e-15  Score=147.25  Aligned_cols=110  Identities=18%  Similarity=0.258  Sum_probs=94.3

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .+.|+..+.||+|+||.||+|.. .+|+.||+|.+... .......+.+|++++.+++||||+++++++...+..++|||
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~-~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E  128 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTP-YPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILE  128 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-SHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEE
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEeccc-chhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEE
Confidence            46788899999999999999998 56899999998532 22345678999999999999999999999999999999999


Q ss_pred             cccCCChhhhcccccc-c---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK-I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~-~---------~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.+++..... .         .+++.||+|||+.||
T Consensus       129 ~~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~gi  170 (387)
T 1kob_A          129 FLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSI  170 (387)
T ss_dssp             CCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             cCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999999999975432 1         348999999998875

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.58  E-value=4.7e-16  Score=144.76  Aligned_cols=112  Identities=22%  Similarity=0.309  Sum_probs=95.4

Q ss_pred             HhcCcccccccccCCCeeEEEEEe------CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCC
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSS  341 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~  341 (380)
                      ..++|+..+.||+|+||.||+|+.      .+++.||||++.........+.+.+|++++.++ +||||+++++++..++
T Consensus        21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~  100 (313)
T 1t46_A           21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG  100 (313)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             ChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCC
Confidence            456788899999999999999985      356799999997544444567899999999999 9999999999999999


Q ss_pred             ceeEEeecccCCChhhhcccccc---------------------------cceeeeeecceeeecC
Q 016905          342 ERILVYPFMQNLSVAYRLRVSHK---------------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       342 ~~~lV~Ey~~~GsL~~~L~~~~~---------------------------~~~~~~aL~yLH~~~i  380 (380)
                      ..++||||+++|+|.++++....                           ..+++.||+|||+.+|
T Consensus       101 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  166 (313)
T 1t46_A          101 PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNC  166 (313)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            99999999999999999976532                           1248899999999875

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.58  E-value=6.1e-16  Score=147.14  Aligned_cols=111  Identities=18%  Similarity=0.214  Sum_probs=94.5

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      .++|+..+.||+|+||.||+++. .+|+.||||++....  .....+.+.+|++++.+++||||+++++++...+..++|
T Consensus        40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  119 (350)
T 1rdq_E           40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV  119 (350)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEE
Confidence            35688889999999999999998 568999999996321  223457789999999999999999999999999999999


Q ss_pred             eecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.++++.....         .+++.||+|||+.||
T Consensus       120 ~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i  162 (350)
T 1rdq_E          120 MEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDL  162 (350)
T ss_dssp             EECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            9999999999999764432         348999999999875

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.58  E-value=1e-15  Score=143.50  Aligned_cols=111  Identities=18%  Similarity=0.235  Sum_probs=94.5

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCC-----chHHHHHHHHHHHhcCcCCCCccceeeeeCCCce
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSP-----GGEAAFQREVHLISVAIHKNLLQLIGYCTTSSER  343 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-----~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~  343 (380)
                      .+.|+..+.||+|+||.||++.. .+|+.||||.+......     ...+.+.+|+.++.+++||||+++++++...+..
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   90 (321)
T 2a2a_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV   90 (321)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence            45688899999999999999998 56899999999643221     1367899999999999999999999999999999


Q ss_pred             eEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ++||||+++|+|.+++......         .+++.||+|||+.+|
T Consensus        91 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~i  136 (321)
T 2a2a_A           91 VLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTKKI  136 (321)
T ss_dssp             EEEECCCCSCBHHHHHHTCSCEEHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999999999999999764432         348999999998875

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.58  E-value=1.7e-15  Score=141.25  Aligned_cols=109  Identities=20%  Similarity=0.285  Sum_probs=91.9

Q ss_pred             cCccc-ccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSE-SNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~-~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      +.|+. .++||+|+||.||+|.. .+++.||||++... .....+.+.+|++++.++ +||||+++++++..++..++||
T Consensus        12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~   90 (316)
T 2ac3_A           12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQ-PGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVF   90 (316)
T ss_dssp             TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECC-SSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeC-cchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEE
Confidence            34555 37899999999999997 57899999999643 334567899999999985 7999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.+++......         .+++.||+|||+.+|
T Consensus        91 e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i  132 (316)
T 2ac3_A           91 EKMRGGSILSHIHKRRHFNELEASVVVQDVASALDFLHNKGI  132 (316)
T ss_dssp             ECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999999999999765432         348999999999875

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.58  E-value=6.2e-16  Score=145.24  Aligned_cols=112  Identities=26%  Similarity=0.326  Sum_probs=92.6

Q ss_pred             HhcCcccccccccCCCeeEEEEEe------CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCc
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSE  342 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~  342 (380)
                      ..++|+..+.||+|+||.||+|..      .++..||||++...........|.+|+.++.+++||||+++++++...+.
T Consensus        28 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~  107 (327)
T 2yfx_A           28 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLP  107 (327)
T ss_dssp             CGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             ChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCC
Confidence            346788899999999999999984      35779999999654444556789999999999999999999999999999


Q ss_pred             eeEEeecccCCChhhhcccccc----------------cceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHK----------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~----------------~~~~~~aL~yLH~~~i  380 (380)
                      .++||||+++|+|.++++....                ..+++.||+|||+.+|
T Consensus       108 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~i  161 (327)
T 2yfx_A          108 RFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHF  161 (327)
T ss_dssp             CEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCe
Confidence            9999999999999999986532                1348899999999875

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.58  E-value=9e-16  Score=143.72  Aligned_cols=110  Identities=22%  Similarity=0.344  Sum_probs=80.1

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .++|+..+.||+|+||.||+|.. .+|+.||+|++.........+.+.+|++++.+++||||+++++++..++..++|||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   83 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE   83 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence            45678889999999999999998 56899999999644444445788999999999999999999999999999999999


Q ss_pred             cccCCChhhhcccccc---------------cceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK---------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~---------------~~~~~~aL~yLH~~~i  380 (380)
                      |++ |+|.+++.....               ..+++.||+|||+.||
T Consensus        84 ~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~i  129 (317)
T 2pmi_A           84 FMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENKI  129 (317)
T ss_dssp             CCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             ecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            998 699999864321               1258999999999875

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.58  E-value=7.5e-16  Score=148.11  Aligned_cols=112  Identities=21%  Similarity=0.322  Sum_probs=94.9

Q ss_pred             HhcCcccccccccCCCeeEEEEEe--------CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeC
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL--------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTT  339 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~--------~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~  339 (380)
                      ..++|...+.||+|+||.||+|..        .++..||||++.........+.+.+|++++.++ +|||||++++++..
T Consensus        67 ~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~  146 (382)
T 3tt0_A           67 PRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ  146 (382)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             chhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeecc
Confidence            456788889999999999999986        234689999997554444567899999999999 99999999999999


Q ss_pred             CCceeEEeecccCCChhhhcccccc-------------------------cceeeeeecceeeecC
Q 016905          340 SSERILVYPFMQNLSVAYRLRVSHK-------------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       340 ~~~~~lV~Ey~~~GsL~~~L~~~~~-------------------------~~~~~~aL~yLH~~~i  380 (380)
                      ++..++||||+++|+|.+++.....                         ..+++.||+|||+.+|
T Consensus       147 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i  212 (382)
T 3tt0_A          147 DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKC  212 (382)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            9999999999999999999976431                         1348999999999876

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.58  E-value=6.7e-16  Score=142.74  Aligned_cols=110  Identities=20%  Similarity=0.283  Sum_probs=91.7

Q ss_pred             hcCcccccccccCCCeeEEEEEe-----CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCC--Cc
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-----SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS--SE  342 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-----~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~--~~  342 (380)
                      .++|+..+.||+|+||.||++.+     .+++.||||++... .....+.|.+|++++.+++||||+++++++...  ..
T Consensus         9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   87 (295)
T 3ugc_A            9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS-TEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRN   87 (295)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCC-CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTS
T ss_pred             HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccC-CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCc
Confidence            35677889999999999999984     36889999999632 334467899999999999999999999998653  45


Q ss_pred             eeEEeecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      .++||||+++|+|.++++....          ..+++.||+|||+.+|
T Consensus        88 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  135 (295)
T 3ugc_A           88 LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY  135 (295)
T ss_dssp             CEEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eEEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhcCCc
Confidence            8999999999999999976433          1358999999999875

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.58  E-value=8.8e-16  Score=140.52  Aligned_cols=110  Identities=17%  Similarity=0.312  Sum_probs=94.2

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .+.|+..+.||+|+||.||+|.. .++..+|+|++.... ....+.|.+|++++.+++||||+++++++...+..++|||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   86 (277)
T 3f3z_A            8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYF-VEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVME   86 (277)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGG-CSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhc-cchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEe
Confidence            45688889999999999999998 457899999996432 2346789999999999999999999999999999999999


Q ss_pred             cccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.+++......         .+++.||+|||+.+|
T Consensus        87 ~~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i  127 (277)
T 3f3z_A           87 LCTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKLNV  127 (277)
T ss_dssp             CCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             ccCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            99999999998754432         348999999998874

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.58  E-value=7.7e-16  Score=148.78  Aligned_cols=111  Identities=20%  Similarity=0.267  Sum_probs=92.7

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~l  345 (380)
                      .++|+..++||+|+||.||+++. .+++.||||++....  .....+.+.+|..++.++ +|||||++++++..++..++
T Consensus        51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l  130 (396)
T 4dc2_A           51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF  130 (396)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence            45788899999999999999998 568899999996432  222345688999999887 89999999999999999999


Q ss_pred             EeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||||+++|+|.++++..+..         .+++.||+|||+.||
T Consensus       131 V~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~gi  174 (396)
T 4dc2_A          131 VIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGI  174 (396)
T ss_dssp             EEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEcCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            99999999999999765443         348999999999886

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.58  E-value=1e-15  Score=140.47  Aligned_cols=111  Identities=18%  Similarity=0.222  Sum_probs=94.8

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      .++|+..+.||+|+||.||+|.. .+++.||+|++.... .....+.+.+|++++.+++||||+++++++..++..++||
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   84 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF   84 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence            46788899999999999999998 568999999996432 3334577899999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.+++......         .+++.||+|||+.+|
T Consensus        85 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  126 (284)
T 3kk8_A           85 DLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNGI  126 (284)
T ss_dssp             CCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             ecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            999999999888755432         348999999998874

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.58  E-value=6.9e-16  Score=146.47  Aligned_cols=113  Identities=23%  Similarity=0.365  Sum_probs=94.5

Q ss_pred             HHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCce
Q 016905          268 LATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSER  343 (380)
Q Consensus       268 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~  343 (380)
                      ...++|...++||+|+||.||+|+. .+|+.||||++....  .....+.+..|.+++..+ +||||+++++++...+..
T Consensus        14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~   93 (345)
T 1xjd_A           14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL   93 (345)
T ss_dssp             --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred             CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence            4567899999999999999999998 568999999996321  123456788999999877 999999999999999999


Q ss_pred             eEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ++||||+++|+|.++++.....         .+++.||+|||++||
T Consensus        94 ~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i  139 (345)
T 1xjd_A           94 FFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKGI  139 (345)
T ss_dssp             EEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999999999999999764332         348999999999886

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.57  E-value=9.1e-16  Score=146.07  Aligned_cols=111  Identities=19%  Similarity=0.216  Sum_probs=95.5

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .++|+..+.||+|+||.||++.. .++..||+|++.........+.+.+|+.++.+++||||+++++++..++..++|||
T Consensus        32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  111 (360)
T 3eqc_A           32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME  111 (360)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEE
Confidence            35688889999999999999998 46899999999754444456789999999999999999999999999999999999


Q ss_pred             cccCCChhhhccccccc---------ceeeeeecceeee-cC
Q 016905          349 FMQNLSVAYRLRVSHKI---------YTKIISLSSLHCF-SL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~-~i  380 (380)
                      |+++|+|.++++.....         .+++.||+|||+. +|
T Consensus       112 ~~~~~~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~i  153 (360)
T 3eqc_A          112 HMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKI  153 (360)
T ss_dssp             CCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhCCE
Confidence            99999999999765332         3488999999985 54

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.57  E-value=1.3e-15  Score=141.19  Aligned_cols=110  Identities=21%  Similarity=0.271  Sum_probs=89.5

Q ss_pred             cCcccccccccCCCeeEEEEEe-----CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCC--Cce
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-----SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS--SER  343 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-----~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~--~~~  343 (380)
                      +.|+..+.||+|+||.||+|++     .+++.||||++.........+.+.+|++++.+++||||+++++++...  +..
T Consensus        21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~  100 (302)
T 4e5w_A           21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI  100 (302)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred             hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence            4477789999999999999984     468899999997544444568899999999999999999999999876  568


Q ss_pred             eEEeecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      ++||||+++|+|.++++....          ..+++.||+|||+.+|
T Consensus       101 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  147 (302)
T 4e5w_A          101 KLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQY  147 (302)
T ss_dssp             EEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhhcCCc
Confidence            999999999999999954322          1348999999998875

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.57  E-value=1.4e-15  Score=151.59  Aligned_cols=112  Identities=16%  Similarity=0.221  Sum_probs=92.6

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCC------------chHHHHHHHHHHHhcCcCCCCcccee
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSP------------GGEAAFQREVHLISVAIHKNLLQLIG  335 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~------------~~~~~f~~e~~~l~~l~H~Niv~l~g  335 (380)
                      ..+.|...+.||+|+||.||+|.. .+++.||||++......            ...+.+.+|+.++.+++||||+++++
T Consensus        34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~  113 (504)
T 3q5i_A           34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD  113 (504)
T ss_dssp             GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred             cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence            456788999999999999999998 56889999998632211            33577999999999999999999999


Q ss_pred             eeeCCCceeEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          336 YCTTSSERILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       336 ~~~~~~~~~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ++..++..++||||+++|+|.+++......         .+++.||+|||+.+|
T Consensus       114 ~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i  167 (504)
T 3q5i_A          114 VFEDKKYFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQILSGICYLHKHNI  167 (504)
T ss_dssp             EEECSSEEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEEcCCEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            999999999999999999999998754433         348999999999875

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.57  E-value=1.2e-15  Score=140.71  Aligned_cols=109  Identities=19%  Similarity=0.312  Sum_probs=92.0

Q ss_pred             cCcccccccccCCCeeEEEEEeCCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      ++|+..+.||+|+||.||+|...+++.||+|++.... .....+.+.+|++++.+++||||+++++++..++..++||||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence            4678889999999999999999889999999996322 222357789999999999999999999999999999999999


Q ss_pred             ccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      +++ +|.+++.....          ..+++.||+|||+.+|
T Consensus        82 ~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  121 (288)
T 1ob3_A           82 LDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRV  121 (288)
T ss_dssp             CSE-EHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            985 99998875322          1348999999999876

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.57  E-value=1.3e-15  Score=139.72  Aligned_cols=110  Identities=16%  Similarity=0.220  Sum_probs=93.6

Q ss_pred             cCcccccccccCCCeeEEEEEeC-CCcEEEEEEecccCC-----CchHHHHHHHHHHHhcCcCCCCccceeeeeCCCcee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYYS-----PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~~-----~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~  344 (380)
                      ++|+..+.||+|+||.||++... +++.||+|.+.....     ....+.|.+|+.++.+++||||+++++++..++..+
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV   84 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence            45788899999999999999984 689999999863221     123678999999999999999999999999999999


Q ss_pred             EEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +||||+++|+|.+++......         .+++.||+|||+.+|
T Consensus        85 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  129 (283)
T 3bhy_A           85 LILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSKRI  129 (283)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEEeecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999999999999999754332         348999999998774

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.57  E-value=1.3e-15  Score=149.81  Aligned_cols=109  Identities=26%  Similarity=0.323  Sum_probs=92.7

Q ss_pred             HHhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCC-ceeEE
Q 016905          268 LATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS-ERILV  346 (380)
Q Consensus       268 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~-~~~lV  346 (380)
                      ...++|+..+.||+|+||.||+|.+ .|+.||||+++...   ..+.|.+|+++|.+++|||||++++++...+ ..++|
T Consensus       190 i~~~~~~~~~~lG~G~fg~V~~~~~-~~~~vavK~~~~~~---~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv  265 (450)
T 1k9a_A          190 LNMKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA---TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIV  265 (450)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEESSCT---TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEE
T ss_pred             cChHHeEEEeeecCcCCeeEEEEEe-cCCeEEEEEeCCch---HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEE
Confidence            3456788889999999999999998 57899999996432   4578999999999999999999999987765 78999


Q ss_pred             eecccCCChhhhccccccc-----------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI-----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~-----------~~~~~aL~yLH~~~i  380 (380)
                      ||||++|+|.++++.....           .+++.||+|||+++|
T Consensus       266 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i  310 (450)
T 1k9a_A          266 TEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNF  310 (450)
T ss_dssp             EECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999999999999864321           348899999999875

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.57  E-value=1.3e-15  Score=141.18  Aligned_cols=111  Identities=19%  Similarity=0.244  Sum_probs=87.4

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC-------------------------CchHHHHHHHHHHHh
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS-------------------------PGGEAAFQREVHLIS  323 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-------------------------~~~~~~f~~e~~~l~  323 (380)
                      .++|+..+.||+|+||.||+|.. .+++.||||++.....                         ....+.|.+|++++.
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~   91 (298)
T 2zv2_A           12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK   91 (298)
T ss_dssp             ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred             ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence            35788899999999999999998 5689999999863211                         112367899999999


Q ss_pred             cCcCCCCccceeeeeC--CCceeEEeecccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          324 VAIHKNLLQLIGYCTT--SSERILVYPFMQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       324 ~l~H~Niv~l~g~~~~--~~~~~lV~Ey~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      +++||||+++++++..  .+..++||||+++|+|.+++.....        ..+++.||+|||+.+|
T Consensus        92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  158 (298)
T 2zv2_A           92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGIEYLHYQKI  158 (298)
T ss_dssp             TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSSCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999999999999986  5678999999999999998754322        2348999999998874

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.57  E-value=1.4e-15  Score=148.16  Aligned_cols=111  Identities=14%  Similarity=0.288  Sum_probs=90.7

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-------CCchHHHHHHHHHHHhcCcCCCCccceeeeeCC
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-------SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS  340 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-------~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~  340 (380)
                      ..++|...+.||+|+||.||+|.. .+++.||||++....       .......+.+|++++.+++||||+++++++.. 
T Consensus       133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~-  211 (419)
T 3i6u_A          133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA-  211 (419)
T ss_dssp             HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES-
T ss_pred             hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec-
Confidence            467899999999999999999998 568999999986321       11123458899999999999999999999854 


Q ss_pred             CceeEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          341 SERILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       341 ~~~~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +..++|||||++|+|.+++......         .+++.||+|||+.+|
T Consensus       212 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i  260 (419)
T 3i6u_A          212 EDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGI  260 (419)
T ss_dssp             SEEEEEEECCTTCBGGGGTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CceEEEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            4579999999999999998765443         348999999999875

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.57  E-value=4.3e-16  Score=145.35  Aligned_cols=111  Identities=18%  Similarity=0.250  Sum_probs=92.2

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC--CchHHHHHHHHHHHhcCcCCCCccceeeeeCCCc----
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS--PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSE----  342 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~----  342 (380)
                      .+.|+..+.||+|+||.||++.. .+++.||||++.....  ....+.|.+|++++.+++||||+++++++...+.    
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~   90 (311)
T 3ork_A           11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   90 (311)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred             cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence            35788899999999999999997 6789999999964322  2235678999999999999999999999876543    


Q ss_pred             eeEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      .++||||+++|+|.++++.....         .+++.||+|||+.+|
T Consensus        91 ~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  137 (311)
T 3ork_A           91 PYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGI  137 (311)
T ss_dssp             EEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence            39999999999999999754432         348999999999875

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.57  E-value=1.2e-15  Score=139.90  Aligned_cols=111  Identities=24%  Similarity=0.289  Sum_probs=94.6

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeEE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      .++|+..+.||+|+||.||+|.. .+++.||||++... ........+.+|+..+.++ +||||+++++++..++..++|
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv   89 (289)
T 1x8b_A           10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQ   89 (289)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEE
T ss_pred             cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEE
Confidence            46688899999999999999998 47999999999643 2334567889999999999 999999999999999999999


Q ss_pred             eecccCCChhhhcccccc-------------cceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHK-------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~-------------~~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.+++.....             ..+++.||+|||+.+|
T Consensus        90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i  136 (289)
T 1x8b_A           90 NEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSL  136 (289)
T ss_dssp             EECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            999999999999975421             1348999999999875

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.57  E-value=1.2e-15  Score=142.09  Aligned_cols=110  Identities=17%  Similarity=0.276  Sum_probs=93.2

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCC-chHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSP-GGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      ++|+..+.||+|+||.||+|.. .+|+.||||++...... ...+.+.+|++++.+++||||+++++++...+..++|||
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (311)
T 4agu_A            3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE   82 (311)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence            5688899999999999999998 55899999998643222 235678899999999999999999999999999999999


Q ss_pred             cccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+++++|.++++.....         .+++.||+|||+.||
T Consensus        83 ~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~i  123 (311)
T 4agu_A           83 YCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKHNC  123 (311)
T ss_dssp             CCSEEHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             eCCCchHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence            99999999988754333         348899999999875

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.57  E-value=1.1e-15  Score=151.03  Aligned_cols=110  Identities=20%  Similarity=0.259  Sum_probs=94.2

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|...+.||+|+||.||+|.. .+|+.||||++....  .....+.+.+|+.++..++||||+++++++...+..++||
T Consensus        16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~   95 (476)
T 2y94_A           16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM   95 (476)
T ss_dssp             TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            5688889999999999999998 479999999996321  1223567899999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.+++......         .+++.||+|||+.+|
T Consensus        96 E~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~gi  137 (476)
T 2y94_A           96 EYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMV  137 (476)
T ss_dssp             ECCSSEEHHHHTTSSSSCCHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred             eCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence            999999999999765433         349999999999875

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.57  E-value=5e-16  Score=142.90  Aligned_cols=110  Identities=25%  Similarity=0.375  Sum_probs=94.9

Q ss_pred             HhcCcccccccccCCCeeEEEEEeC-CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ..++|+..+.||+|+||.||+|... ++..||+|.+..  .....+.|.+|++++.+++||||+++++++..++..++||
T Consensus        11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   88 (288)
T 3kfa_A           11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE--DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIT   88 (288)
T ss_dssp             CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECS--CSTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEE
T ss_pred             cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCc--CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEE
Confidence            4567888899999999999999984 588999999964  2335678999999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc-----------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI-----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~-----------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.++++.....           .+++.||+|||+.+|
T Consensus        89 e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i  132 (288)
T 3kfa_A           89 EFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNF  132 (288)
T ss_dssp             ECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHCCc
Confidence            999999999999753221           348899999999875

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.57  E-value=1.4e-15  Score=149.70  Aligned_cols=111  Identities=21%  Similarity=0.293  Sum_probs=94.0

Q ss_pred             HHHhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          267 QLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       267 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      +...++|+..+.||+|+||.||+|.+.++..||||++....  ...++|.+|+++|.+++||||+++++++.. +..++|
T Consensus       180 ~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv  256 (452)
T 1fmk_A          180 EIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT--MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIV  256 (452)
T ss_dssp             BCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS--SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEE
T ss_pred             ccChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC--CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEE
Confidence            34566788899999999999999999877889999996432  246789999999999999999999999876 678999


Q ss_pred             eecccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      ||||++|+|.++++....           ..+++.||+|||+++|
T Consensus       257 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i  301 (452)
T 1fmk_A          257 TEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNY  301 (452)
T ss_dssp             ECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            999999999999975321           1348999999999875

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.57  E-value=1.6e-15  Score=143.03  Aligned_cols=110  Identities=24%  Similarity=0.384  Sum_probs=92.1

Q ss_pred             cCcccccccccCCCeeEEEEEeCC-----CcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeE
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLSD-----NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~~-----g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~l  345 (380)
                      +.|+..+.||+|+||.||+|....     +..||||++...........|.+|++++.+++||||+++++++...+..++
T Consensus        44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  123 (333)
T 1mqb_A           44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI  123 (333)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEE
Confidence            456667899999999999998732     246999999754444456789999999999999999999999999999999


Q ss_pred             EeecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      ||||+++|+|.++++.....          .+++.||+|||+.+|
T Consensus       124 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i  168 (333)
T 1mqb_A          124 ITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNY  168 (333)
T ss_dssp             EEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            99999999999999754221          348899999999875

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.57  E-value=1.5e-15  Score=139.36  Aligned_cols=111  Identities=21%  Similarity=0.269  Sum_probs=91.7

Q ss_pred             HhcCcccccccccCCCeeEEEEEeC----CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCcee
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVLS----DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~~----~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~  344 (380)
                      ..++|+..+.||+|+||.||+|...    .+..||+|++.........+.|.+|+.++.+++||||+++++++. ++..+
T Consensus        13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~   91 (281)
T 1mp8_A           13 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVW   91 (281)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCE
T ss_pred             ehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccE
Confidence            3456888899999999999999973    245799999865444445678999999999999999999999984 46789


Q ss_pred             EEeecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      +||||+++|+|.++++.....          .+++.||+|||+.+|
T Consensus        92 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  137 (281)
T 1mp8_A           92 IIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRF  137 (281)
T ss_dssp             EEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            999999999999999754321          348899999999875

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.57  E-value=9.5e-16  Score=142.84  Aligned_cols=120  Identities=19%  Similarity=0.318  Sum_probs=99.2

Q ss_pred             eCHHHHHHHhcCcccccccccCCCeeEEEEEe------CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccc
Q 016905          261 FSCRELQLATDNFSESNIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQL  333 (380)
Q Consensus       261 ~~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l  333 (380)
                      +...++....++|+..+.||+|+||.||+|..      .+++.||||++.........+.+.+|++++.++ +||||+++
T Consensus        17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~   96 (316)
T 2xir_A           17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL   96 (316)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence            44556666778899999999999999999984      356899999997544444567899999999999 79999999


Q ss_pred             eeeeeCCC-ceeEEeecccCCChhhhccccccc-------------------------ceeeeeecceeeecC
Q 016905          334 IGYCTTSS-ERILVYPFMQNLSVAYRLRVSHKI-------------------------YTKIISLSSLHCFSL  380 (380)
Q Consensus       334 ~g~~~~~~-~~~lV~Ey~~~GsL~~~L~~~~~~-------------------------~~~~~aL~yLH~~~i  380 (380)
                      ++++...+ ..++||||+++|+|.+++......                         .+++.||+|||+.+|
T Consensus        97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i  169 (316)
T 2xir_A           97 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKC  169 (316)
T ss_dssp             EEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99988754 489999999999999999765431                         248899999999875

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.56  E-value=2.1e-15  Score=140.00  Aligned_cols=111  Identities=19%  Similarity=0.250  Sum_probs=95.5

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .+.|+..+.||+|+||.||+|.. .+++.||||++.........+.+.+|+.++.+++||||+++++++...+..++|||
T Consensus        21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e  100 (303)
T 3a7i_A           21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME  100 (303)
T ss_dssp             GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEE
Confidence            45688889999999999999997 56899999999754444557889999999999999999999999999999999999


Q ss_pred             cccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.+++.....        ..+++.||+|||+.||
T Consensus       101 ~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  140 (303)
T 3a7i_A          101 YLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKK  140 (303)
T ss_dssp             CCTTEEHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             eCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence            9999999999875322        1348999999998874

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.56  E-value=1.2e-15  Score=151.67  Aligned_cols=111  Identities=15%  Similarity=0.247  Sum_probs=90.6

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      .+.|+..+.||+|+||.||+|.. .++..||+|++.... .......+.+|+.++..++|||||++++++...+..++||
T Consensus        36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  115 (494)
T 3lij_A           36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVM  115 (494)
T ss_dssp             HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            45688899999999999999998 568899999996432 2334678999999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.+++......         .+++.||+|||+.||
T Consensus       116 e~~~~g~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i  157 (494)
T 3lij_A          116 ECYKGGELFDEIIHRMKFNEVDAAVIIKQVLSGVTYLHKHNI  157 (494)
T ss_dssp             ECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             ecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            999999999988754332         348999999999875

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.56  E-value=1.8e-15  Score=139.66  Aligned_cols=109  Identities=21%  Similarity=0.344  Sum_probs=89.8

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      ++|+..+.||+|+||+||+|.. .+++.||||++.... .....+.+.+|++++.+++||||+++++++..++..++|||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   81 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence            4688889999999999999998 568999999996332 33345788999999999999999999999999999999999


Q ss_pred             cccCCChhhhcccc-cc---------cceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVS-HK---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~-~~---------~~~~~~aL~yLH~~~i  380 (380)
                      |+++ ++.+++... ..         ..+++.||+|||+.||
T Consensus        82 ~~~~-~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i  122 (292)
T 3o0g_A           82 FCDQ-DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNV  122 (292)
T ss_dssp             CCSE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             cCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9985 566655432 22         2348999999999875

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.56  E-value=9.8e-16  Score=140.46  Aligned_cols=112  Identities=27%  Similarity=0.333  Sum_probs=94.3

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeE
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~l  345 (380)
                      +.++|+..+.||+|+||.||+|.. .++..||||++....  .....+.+.+|++++.+++||||+++++++...+..++
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   86 (279)
T 3fdn_A            7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL   86 (279)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred             ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEE
Confidence            356788899999999999999998 557899999985321  12235678999999999999999999999999999999


Q ss_pred             EeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||||+++|+|.+++......         .+++.||+|||+.||
T Consensus        87 v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i  130 (279)
T 3fdn_A           87 ILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRV  130 (279)
T ss_dssp             EECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             EEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            99999999999998754332         348999999999875

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.56  E-value=1.3e-15  Score=151.18  Aligned_cols=111  Identities=18%  Similarity=0.247  Sum_probs=95.1

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      .+.|+..+.||+|+||.||++.. .+++.||||++... ......+.+.+|++++.+++|||||++++++...+..++||
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  100 (486)
T 3mwu_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG  100 (486)
T ss_dssp             HHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEE
Confidence            45688899999999999999998 57899999998532 12334678999999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.+++......         .+++.||+|||+.||
T Consensus       101 e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i  142 (486)
T 3mwu_A          101 ELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNI  142 (486)
T ss_dssp             CCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            999999999988754433         348999999999886

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.56  E-value=2.2e-15  Score=149.41  Aligned_cols=111  Identities=17%  Similarity=0.254  Sum_probs=95.6

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      .+.|+..++||+|+||.||++.. .+|+.||||++....  .....+.+.+|+.++.+++||||+++++++...+..++|
T Consensus        25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv  104 (484)
T 3nyv_A           25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV  104 (484)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence            45688889999999999999998 478999999996332  133567899999999999999999999999999999999


Q ss_pred             eecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.+++......         .+++.||+|||+.+|
T Consensus       105 ~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i  147 (484)
T 3nyv_A          105 GEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKNKI  147 (484)
T ss_dssp             ECCCCSCBHHHHHHTCSCCBHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999999999998765443         348999999999876

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.56  E-value=2.9e-15  Score=152.85  Aligned_cols=108  Identities=20%  Similarity=0.279  Sum_probs=89.5

Q ss_pred             Cccccc-ccccCCCeeEEEEEeC---CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          272 NFSESN-IIGQGGFGKVYKGVLS---DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       272 ~~~~~~-~lg~G~~g~Vy~~~~~---~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++...+ .||+|+||.||+|.+.   ++..||||+++........++|.+|+++|.+++|||||+++++|.. +..++||
T Consensus       336 ~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~  414 (613)
T 2ozo_A          336 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVM  414 (613)
T ss_dssp             SEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEE
T ss_pred             ceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEE
Confidence            333333 7999999999999873   4668999999755445567889999999999999999999999976 5689999


Q ss_pred             ecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      |||++|+|.++++.....          .+++.||+|||+++|
T Consensus       415 E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~i  457 (613)
T 2ozo_A          415 EMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNF  457 (613)
T ss_dssp             ECCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EeCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            999999999999754331          348999999999876

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.56  E-value=2e-15  Score=140.28  Aligned_cols=110  Identities=15%  Similarity=0.216  Sum_probs=91.7

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .++|...+.||+|+||.||++.. .+|+.||+|++... .....+.+.+|++++.+++||||+++++++...+..++|||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   86 (304)
T 2jam_A            8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKS-PAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQ   86 (304)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC-------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecc-cccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEE
Confidence            45688889999999999999998 47899999999642 22235678999999999999999999999999999999999


Q ss_pred             cccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.+++......         .+++.||+|||+.+|
T Consensus        87 ~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  127 (304)
T 2jam_A           87 LVSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLHENGI  127 (304)
T ss_dssp             CCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCCccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            99999999998754432         348899999999875

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.56  E-value=2e-15  Score=137.98  Aligned_cols=111  Identities=19%  Similarity=0.251  Sum_probs=94.2

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      .++|...+.||+|+||.||+|.. .+|+.||||++....  .....+.+.+|++.+.+++||||+++++++..++..++|
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   89 (276)
T 2h6d_A           10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV   89 (276)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence            35688889999999999999998 479999999986321  223456889999999999999999999999999999999


Q ss_pred             eecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.+++......         .+++.||+|||+.+|
T Consensus        90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  132 (276)
T 2h6d_A           90 MEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRHMV  132 (276)
T ss_dssp             EECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             EeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence            9999999999999754332         348999999999875

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.56  E-value=2.9e-15  Score=138.68  Aligned_cols=111  Identities=18%  Similarity=0.263  Sum_probs=92.6

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ..+.|+..+.||+|+||.||+|.. .+++.||+|.+... .....+.|.+|++++.+++||||+++++++..++..++||
T Consensus        17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   95 (302)
T 2j7t_A           17 PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETK-SEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMI   95 (302)
T ss_dssp             GGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC-----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEE
T ss_pred             CccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCC-CHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEE
Confidence            456788899999999999999998 45899999998643 3345678999999999999999999999999999999999


Q ss_pred             ecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.+++.....          ..+++.||+|||+.+|
T Consensus        96 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  138 (302)
T 2j7t_A           96 EFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKRI  138 (302)
T ss_dssp             ECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EeCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCc
Confidence            99999999999865322          1348999999999875

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.55  E-value=2.5e-15  Score=141.30  Aligned_cols=101  Identities=21%  Similarity=0.295  Sum_probs=88.1

Q ss_pred             ccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCc-CCCCccceeeeeCCCceeEEeecccCC
Q 016905          276 SNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI-HKNLLQLIGYCTTSSERILVYPFMQNL  353 (380)
Q Consensus       276 ~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~-H~Niv~l~g~~~~~~~~~lV~Ey~~~G  353 (380)
                      .+.||+|+||.||++.. .+++.||||++..    .....+.+|+.++.+++ ||||+++++++..++..++||||+++|
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~----~~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~   91 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISK----RMEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGG   91 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEG----GGHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSC
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEECh----hhhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCC
Confidence            47899999999999998 5689999999953    23567889999999997 999999999999999999999999999


Q ss_pred             Chhhhccccccc---------ceeeeeecceeeecC
Q 016905          354 SVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       354 sL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +|.++++.....         .+++.||+|||+.+|
T Consensus        92 ~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i  127 (325)
T 3kn6_A           92 ELFERIKKKKHFSETEASYIMRKLVSAVSHMHDVGV  127 (325)
T ss_dssp             BHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence            999999865433         348999999998875

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.55  E-value=1.8e-15  Score=142.20  Aligned_cols=110  Identities=24%  Similarity=0.370  Sum_probs=86.1

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCc----EEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCcee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNT----KVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~----~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~  344 (380)
                      .++|+..+.||+|+||.||+|+. .+++    .||+|.+.........+.|.+|+.++.+++||||++++++|... ..+
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~   92 (327)
T 3poz_A           14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQ   92 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESS-SEE
T ss_pred             HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecC-CeE
Confidence            35678889999999999999997 3444    36888886544445678899999999999999999999999875 478


Q ss_pred             EEeecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      +|+||+++|+|.++++.....          .+++.||+|||+.+|
T Consensus        93 ~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i  138 (327)
T 3poz_A           93 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL  138 (327)
T ss_dssp             EEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCCe
Confidence            999999999999999764322          348999999999875

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.55  E-value=1.8e-15  Score=151.94  Aligned_cols=112  Identities=21%  Similarity=0.288  Sum_probs=94.6

Q ss_pred             HHHHhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeE
Q 016905          266 LQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       266 l~~~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~l  345 (380)
                      ++...++|+..+.||+|+||.||+|.+.++..||||++....  ...++|.+|+++|.+++|||||++++++.. +..++
T Consensus       262 ~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~l  338 (535)
T 2h8h_A          262 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT--MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYI  338 (535)
T ss_dssp             SBCCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS--SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEE
T ss_pred             eecchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC--CCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceE
Confidence            344567788899999999999999999877889999996432  246789999999999999999999999876 67899


Q ss_pred             EeecccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      |||||++|+|.++|+....           ..+++.||+|||+++|
T Consensus       339 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~i  384 (535)
T 2h8h_A          339 VTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNY  384 (535)
T ss_dssp             EECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999999999999975321           1348999999999875

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.55  E-value=1.8e-15  Score=138.55  Aligned_cols=111  Identities=24%  Similarity=0.355  Sum_probs=93.8

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      .++|+..+.||+|+||.||+|+. .+|+.||||++....  .....+.+.+|++++.+++||||+++++++...+..++|
T Consensus        10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   89 (278)
T 3cok_A           10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV   89 (278)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence            35688889999999999999998 679999999995321  122357799999999999999999999999999999999


Q ss_pred             eecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.+++.....          ..+++.||+|||+.+|
T Consensus        90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  133 (278)
T 3cok_A           90 LEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSHGI  133 (278)
T ss_dssp             EECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            999999999999976422          1348999999998874

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.55  E-value=1.5e-15  Score=142.86  Aligned_cols=112  Identities=21%  Similarity=0.350  Sum_probs=91.1

Q ss_pred             HHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeE
Q 016905          268 LATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       268 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~l  345 (380)
                      ...++|+..+.||+|+||.||+|.. .+++.||||++.... .....+.+.+|++++.+++||||+++++++..++..++
T Consensus        31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  110 (329)
T 3gbz_A           31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHL  110 (329)
T ss_dssp             -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEE
T ss_pred             cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEE
Confidence            3456789999999999999999997 578999999996332 22235678899999999999999999999999999999


Q ss_pred             EeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||||++ |+|.+++......         .+++.||+|||+.+|
T Consensus       111 v~e~~~-~~L~~~~~~~~~~~~~~~~~i~~ql~~~l~~LH~~~i  153 (329)
T 3gbz_A          111 IFEYAE-NDLKKYMDKNPDVSMRVIKSFLYQLINGVNFCHSRRC  153 (329)
T ss_dssp             EEECCS-EEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEecCC-CCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            999998 5999999765433         348999999999876

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.55  E-value=1.2e-15  Score=144.23  Aligned_cols=109  Identities=17%  Similarity=0.284  Sum_probs=92.4

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|...+.||+|+||.||+|.. .+++.||||++....  .....+.+.+|+.++..++||||+++++++..++..++||
T Consensus         9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~   88 (336)
T 3h4j_B            9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVI   88 (336)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            5688899999999999999998 678999999985321  1223467899999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+ +|+|.+++......         .+++.||+|||+.||
T Consensus        89 E~~-~g~l~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~gi  129 (336)
T 3h4j_B           89 EYA-GGELFDYIVEKKRMTEDEGRRFFQQIICAIEYCHRHKI  129 (336)
T ss_dssp             CCC-CEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ECC-CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            999 78999998754433         348999999999876

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.55  E-value=1.3e-15  Score=143.09  Aligned_cols=110  Identities=23%  Similarity=0.397  Sum_probs=90.0

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcE--EEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeEE
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTK--VAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~--vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      ++|+..+.||+|+||.||+|.. .++..  +|+|++.........+.+.+|++++.++ +||||+++++++...+..++|
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv  104 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA  104 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence            5678889999999999999998 45664  5999986544444567899999999999 999999999999999999999


Q ss_pred             eecccCCChhhhccccc----------------c---------cceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSH----------------K---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~----------------~---------~~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.++++...                .         ..+++.||+|||+.+|
T Consensus       105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i  163 (327)
T 1fvr_A          105 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQF  163 (327)
T ss_dssp             ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999999997653                1         1348899999999875

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.55  E-value=2.2e-15  Score=139.12  Aligned_cols=111  Identities=14%  Similarity=0.228  Sum_probs=93.7

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      .++|...+.||+|+||.||++.. .+++.+|+|.+....  .....+.+.+|+.++.+++||||+++++++...+..++|
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   93 (294)
T 2rku_A           14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV   93 (294)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence            35677889999999999999998 458899999986432  223467789999999999999999999999999999999


Q ss_pred             eecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.+++......         .+++.||+|||+.+|
T Consensus        94 ~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i  136 (294)
T 2rku_A           94 LELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRNRV  136 (294)
T ss_dssp             EECCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            9999999999998754332         348999999998874

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.55  E-value=3.2e-15  Score=139.97  Aligned_cols=108  Identities=20%  Similarity=0.289  Sum_probs=90.6

Q ss_pred             cccccccccCCCeeEEEEEe-----CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCC--CceeE
Q 016905          273 FSESNIIGQGGFGKVYKGVL-----SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS--SERIL  345 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-----~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~--~~~~l  345 (380)
                      |+..+.||+|+||.||++.+     .+++.||||++.........+.|.+|++++.+++||||+++++++...  ...++
T Consensus        33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l  112 (318)
T 3lxp_A           33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL  112 (318)
T ss_dssp             EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred             HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence            47789999999999999875     367899999997554445567899999999999999999999999874  56789


Q ss_pred             EeecccCCChhhhccccccc--------ceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHKI--------YTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~~--------~~~~~aL~yLH~~~i  380 (380)
                      ||||+++|+|.+++......        .+++.||+|||+.+|
T Consensus       113 v~e~~~~~~L~~~l~~~~~~~~~~~~i~~~l~~~l~~LH~~~i  155 (318)
T 3lxp_A          113 VMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQHY  155 (318)
T ss_dssp             EECCCTTCBHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEecccCCcHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999999999765322        348999999998874

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.55  E-value=2.2e-15  Score=144.59  Aligned_cols=109  Identities=26%  Similarity=0.395  Sum_probs=89.8

Q ss_pred             CcccccccccCCCeeEEEEEe--CCC--cEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeC-CCceeEE
Q 016905          272 NFSESNIIGQGGFGKVYKGVL--SDN--TKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT-SSERILV  346 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~--~~g--~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~-~~~~~lV  346 (380)
                      .|+..++||+|+||.||+|..  .++  ..||||.+.........+.|.+|+.++.+++||||++++++|.. ++..++|
T Consensus        90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv  169 (373)
T 3c1x_A           90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV  169 (373)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEE
T ss_pred             eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEE
Confidence            355678899999999999987  232  46899999754455567889999999999999999999999765 4578999


Q ss_pred             eecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.++++.....          .+++.||+|||+.+|
T Consensus       170 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i  213 (373)
T 3c1x_A          170 LPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKF  213 (373)
T ss_dssp             EECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            9999999999999754321          348999999999876

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.55  E-value=1.5e-15  Score=145.74  Aligned_cols=111  Identities=23%  Similarity=0.272  Sum_probs=84.7

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHH-HhcCcCCCCccceeeeeCCCceeE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHL-ISVAIHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~-l~~l~H~Niv~l~g~~~~~~~~~l  345 (380)
                      .++|+..++||+|+||.||+++. .+++.||||++....  .....+.+.+|..+ +..++|||||++++++...+..++
T Consensus        37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l  116 (373)
T 2r5t_A           37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF  116 (373)
T ss_dssp             GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred             hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence            45788899999999999999998 568899999996432  22234566777776 577899999999999999999999


Q ss_pred             EeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||||+++|+|.++++.....         .+++.||+|||++||
T Consensus       117 v~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~gi  160 (373)
T 2r5t_A          117 VLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNI  160 (373)
T ss_dssp             EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            99999999999999764432         348999999999886

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.55  E-value=3.6e-15  Score=137.53  Aligned_cols=108  Identities=20%  Similarity=0.293  Sum_probs=89.8

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      .+....+||+|+||.||+|.. .+++.||||.+... .....+.+.+|+.++..++||||+++++++...+..++||||+
T Consensus        23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~  101 (295)
T 2clq_A           23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPER-DSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQV  101 (295)
T ss_dssp             TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECC-CC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCC-chHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeC
Confidence            344566899999999999997 66889999999643 3344678999999999999999999999999999999999999


Q ss_pred             cCCChhhhcccccc------------cceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSHK------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~~------------~~~~~~aL~yLH~~~i  380 (380)
                      ++|+|.++++....            ..+++.||+|||+.+|
T Consensus       102 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  143 (295)
T 2clq_A          102 PGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQI  143 (295)
T ss_dssp             SEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             CCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhCCE
Confidence            99999999975421            1348999999998874

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.55  E-value=3.1e-15  Score=137.74  Aligned_cols=109  Identities=21%  Similarity=0.293  Sum_probs=89.6

Q ss_pred             cCccccc-ccccCCCeeEEEEEeC---CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          271 DNFSESN-IIGQGGFGKVYKGVLS---DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       271 ~~~~~~~-~lg~G~~g~Vy~~~~~---~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      ++|...+ .||+|+||.||+|++.   ++..||||++.........+.+.+|++++.+++||||+++++++ ..+..++|
T Consensus         9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~lv   87 (287)
T 1u59_A            9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLV   87 (287)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEEE
T ss_pred             HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEEE
Confidence            3454555 8999999999999863   57889999997544445577899999999999999999999999 45678999


Q ss_pred             eecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.+++......          .+++.||+|||+.+|
T Consensus        88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  131 (287)
T 1u59_A           88 MEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNF  131 (287)
T ss_dssp             EECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            9999999999999644321          348999999998874

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.54  E-value=2.9e-15  Score=136.56  Aligned_cols=109  Identities=25%  Similarity=0.319  Sum_probs=88.3

Q ss_pred             hcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCC---CchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYS---PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~---~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      .++|+..+.||+|+||.||+|.. .++.||||++.....   ....+.+.+|++++..++||||+++++++..++..++|
T Consensus         6 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   84 (271)
T 3dtc_A            6 FAELTLEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLV   84 (271)
T ss_dssp             TTSEEEEEEEEEETTEEEEEEEE-TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEE
T ss_pred             hhheeeeeeeccCCCeEEEEEEE-cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEE
Confidence            35688889999999999999998 588999999863222   22357899999999999999999999999999999999


Q ss_pred             eecccCCChhhhccccccc--------ceeeeeecceeeec
Q 016905          347 YPFMQNLSVAYRLRVSHKI--------YTKIISLSSLHCFS  379 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~--------~~~~~aL~yLH~~~  379 (380)
                      |||+++|+|.++++.....        .+++.||+|||+.+
T Consensus        85 ~e~~~~~~L~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~  125 (271)
T 3dtc_A           85 MEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEA  125 (271)
T ss_dssp             EECCTTEEHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             EEcCCCCCHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999998654321        34899999999977

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.54  E-value=9.9e-16  Score=150.36  Aligned_cols=111  Identities=19%  Similarity=0.187  Sum_probs=85.5

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc--CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY--YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~--~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      .++|+..+.||+|+||.||++.. .+|+.||||++...  ........+.+|++++.+++||||+++++++...+..++|
T Consensus       147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  226 (446)
T 4ejn_A          147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV  226 (446)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred             hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence            46788899999999999999998 56899999999632  2233456788999999999999999999999999999999


Q ss_pred             eecccCCChhhhccccccc---------ceeeeeecceee-ecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHC-FSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~-~~i  380 (380)
                      ||||++|+|.+++......         .+++.||+|||+ .||
T Consensus       227 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~gi  270 (446)
T 4ejn_A          227 MEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNV  270 (446)
T ss_dssp             ECCCSSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             EeeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhcCCE
Confidence            9999999999999754432         348999999997 665

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.54  E-value=4e-15  Score=137.40  Aligned_cols=108  Identities=24%  Similarity=0.312  Sum_probs=88.7

Q ss_pred             cccccccccCCCeeEEEEEe-CCC---cEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCce-eEEe
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDN---TKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSER-ILVY  347 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g---~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~-~lV~  347 (380)
                      |+..++||+|+||.||+|.. .++   ..+|+|.+.........+.|.+|++++.+++||||+++++++...+.. ++||
T Consensus        23 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~  102 (298)
T 3pls_A           23 THSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLL  102 (298)
T ss_dssp             EEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEE
T ss_pred             EccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEEE
Confidence            44568899999999999986 233   379999996544444567899999999999999999999999876655 8999


Q ss_pred             ecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      ||+.+|+|.++++.....          .+++.||+|||+.+|
T Consensus       103 e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i  145 (298)
T 3pls_A          103 PYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQKF  145 (298)
T ss_dssp             CCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999999999999763321          348999999999875

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.54  E-value=1.6e-15  Score=144.38  Aligned_cols=112  Identities=19%  Similarity=0.210  Sum_probs=94.4

Q ss_pred             HhcCcccccccccCCCeeEEEEEeC-CCcEEEEEEecccC--CCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCcee
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYY--SPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~  344 (380)
                      ..++|+..++||+|+||.||++... +++.||||++....  .....+.+..|..++..+ +||||+++++++...+..+
T Consensus        18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~   97 (353)
T 2i0e_A           18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY   97 (353)
T ss_dssp             -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred             chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence            4567899999999999999999984 58899999996321  223456788999999988 8999999999999999999


Q ss_pred             EEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +||||+++|+|.++++.....         .+++.||+|||+.||
T Consensus        98 lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~gi  142 (353)
T 2i0e_A           98 FVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSKGI  142 (353)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            999999999999999764333         349999999999886

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.54  E-value=2.8e-15  Score=139.79  Aligned_cols=111  Identities=17%  Similarity=0.241  Sum_probs=94.5

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC--CchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS--PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      .++|+..+.||+|+||.||++.. .+++.||+|++.....  ....+.+.+|+.++.+++||||+++++++..++..++|
T Consensus        33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv  112 (309)
T 2h34_A           33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD  112 (309)
T ss_dssp             -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence            46788899999999999999998 4688999999964322  22357799999999999999999999999999999999


Q ss_pred             eecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.+++......         .+++.||+|||+.+|
T Consensus       113 ~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i  155 (309)
T 2h34_A          113 MRLINGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDAAHAAGA  155 (309)
T ss_dssp             EECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCcC
Confidence            9999999999999764332         348999999999875

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.54  E-value=6.9e-15  Score=135.25  Aligned_cols=108  Identities=29%  Similarity=0.361  Sum_probs=89.0

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCch------HHHHHHHHHHHhcCcCCCCccceeeeeCCCc
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGG------EAAFQREVHLISVAIHKNLLQLIGYCTTSSE  342 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~------~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~  342 (380)
                      .++|+..+.||+|+||.||+|.. .+++.||||++........      .+.|.+|++++.+++||||+++++++.... 
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-   96 (287)
T 4f0f_A           18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP-   96 (287)
T ss_dssp             STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT-
T ss_pred             hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC-
Confidence            45788889999999999999998 5789999999863322211      267999999999999999999999987654 


Q ss_pred             eeEEeecccCCChhhhccccccc----------ceeeeeecceeeec
Q 016905          343 RILVYPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFS  379 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~  379 (380)
                       ++||||+++|+|.+++......          .+++.||+|||+.+
T Consensus        97 -~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~  142 (287)
T 4f0f_A           97 -RMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQN  142 (287)
T ss_dssp             -EEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             -eEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHhCC
Confidence             7999999999999988654321          34889999999987

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.54  E-value=1.3e-15  Score=140.88  Aligned_cols=113  Identities=19%  Similarity=0.220  Sum_probs=79.2

Q ss_pred             HHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          268 LATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       268 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      ...++|+..+.||+|+||.||+|.. .+++.||||++.........+++.+|+.++.+++||||+++++++...+..++|
T Consensus        12 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   91 (303)
T 2vwi_A           12 INRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLV   91 (303)
T ss_dssp             -CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEE
T ss_pred             cchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEE
Confidence            3457888999999999999999997 578999999986433334467789999999999999999999999999999999


Q ss_pred             eecccCCChhhhcccc--------cc---------cceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVS--------HK---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~--------~~---------~~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.+++...        ..         ..+++.||+|||+.+|
T Consensus        92 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i  142 (303)
T 2vwi_A           92 MKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQ  142 (303)
T ss_dssp             EECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999998631        11         1348999999999875

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.54  E-value=2.7e-15  Score=141.58  Aligned_cols=111  Identities=14%  Similarity=0.228  Sum_probs=94.0

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      .++|...+.||+|+||.||++.. .+++.+|+|++....  .....+.+.+|+.++.+++||||+++++++...+..++|
T Consensus        40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  119 (335)
T 2owb_A           40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV  119 (335)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence            45677889999999999999998 458899999986432  223467789999999999999999999999999999999


Q ss_pred             eecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.+++......         .+++.||+|||+.+|
T Consensus       120 ~e~~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i  162 (335)
T 2owb_A          120 LELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRNRV  162 (335)
T ss_dssp             ECCCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EecCCCCCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence            9999999999998754332         348999999999875

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.54  E-value=1.2e-15  Score=144.58  Aligned_cols=107  Identities=17%  Similarity=0.212  Sum_probs=90.3

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeEE
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      ..++|+..+.||+|+||.||++.. .+++.||||++....     ..+.+|++++.++ +||||+++++++..++..++|
T Consensus        20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~-----~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv   94 (342)
T 2qr7_A           20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSK-----RDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVV   94 (342)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTT-----CCCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEE
T ss_pred             ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEccc-----CChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEE
Confidence            346788899999999999999998 568999999996432     1245788888888 799999999999999999999


Q ss_pred             eecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.+++......         .+++.||+|||++||
T Consensus        95 ~E~~~gg~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~gi  137 (342)
T 2qr7_A           95 TELMKGGELLDKILRQKFFSEREASAVLFTITKTVEYLHAQGV  137 (342)
T ss_dssp             ECCCCSCBHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            9999999999999765433         348999999999875

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.54  E-value=1.2e-15  Score=139.70  Aligned_cols=109  Identities=23%  Similarity=0.307  Sum_probs=92.0

Q ss_pred             HhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      ..++|+..+.||+|+||.||+|...++..||||++...  ....+.|.+|++++.+++||||+++++++.. +..++|||
T Consensus        11 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e   87 (279)
T 1qpc_A           11 PRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG--SMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITE   87 (279)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTT--SSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred             CHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCC--cccHHHHHHHHHHHHhCCCcCcceEEEEEcC-CCcEEEEe
Confidence            34678889999999999999999988889999999643  2346789999999999999999999999864 56899999


Q ss_pred             cccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.+++.....           ..+++.||+|||+.+|
T Consensus        88 ~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i  130 (279)
T 1qpc_A           88 YMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNY  130 (279)
T ss_dssp             CCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999999999975421           1348999999998874

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.54  E-value=2.1e-15  Score=138.61  Aligned_cols=111  Identities=23%  Similarity=0.290  Sum_probs=93.6

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      .++|+..+.||+|+||.||+|.. .+++.||||++....  .....+.+.+|++++.+++||||+++++++...+..++|
T Consensus        13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   92 (284)
T 2vgo_A           13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLM   92 (284)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEE
Confidence            35688889999999999999998 467899999985321  122357799999999999999999999999999999999


Q ss_pred             eecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.+++......         .+++.||+|||+.+|
T Consensus        93 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  135 (284)
T 2vgo_A           93 LEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCHERKV  135 (284)
T ss_dssp             ECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred             EEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            9999999999999764332         348999999999874

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.54  E-value=4.2e-15  Score=137.47  Aligned_cols=110  Identities=25%  Similarity=0.374  Sum_probs=89.6

Q ss_pred             cCcccccccccCCCeeEEEEEeCC----CcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeC-CCceeE
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLSD----NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT-SSERIL  345 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~~----g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~-~~~~~l  345 (380)
                      ..|+..+.||+|+||.||+|...+    ...+|+|.+.........+.|.+|+.++.+++||||++++++|.. ++..++
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  104 (298)
T 3f66_A           25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV  104 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEE
T ss_pred             eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEE
Confidence            346778899999999999999732    236899999754444456789999999999999999999999754 557899


Q ss_pred             EeecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      ||||+++|+|.++++.....          .+++.||+|||+.+|
T Consensus       105 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~i  149 (298)
T 3f66_A          105 VLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKF  149 (298)
T ss_dssp             EEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999999999753321          348999999999875

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.54  E-value=2.3e-15  Score=151.46  Aligned_cols=111  Identities=20%  Similarity=0.284  Sum_probs=94.2

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc--CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY--YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~--~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      .++|+..++||+|+||.||++.. .+|+.||||++...  ........+.+|++++.+++|||||++++++...+..++|
T Consensus       183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV  262 (576)
T 2acx_A          183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV  262 (576)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence            45688889999999999999998 57999999999632  1223456789999999999999999999999999999999


Q ss_pred             eecccCCChhhhcccccc--c---------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHK--I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~--~---------~~~~~aL~yLH~~~i  380 (380)
                      ||||++|+|.+++.....  .         .+++.||+|||+++|
T Consensus       263 mEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~gI  307 (576)
T 2acx_A          263 LTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRERI  307 (576)
T ss_dssp             ECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            999999999999875432  1         348999999999875

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.54  E-value=5.2e-15  Score=140.87  Aligned_cols=119  Identities=25%  Similarity=0.321  Sum_probs=97.4

Q ss_pred             eCHHHHHHHhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCc----------hHHHHHHHHHHHhcCcCCCC
Q 016905          261 FSCRELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPG----------GEAAFQREVHLISVAIHKNL  330 (380)
Q Consensus       261 ~~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~----------~~~~f~~e~~~l~~l~H~Ni  330 (380)
                      ....++....++|+..+.||+|+||.||+|...+|+.||||++.......          ..+.+.+|++++.+++||||
T Consensus        12 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i   91 (362)
T 3pg1_A           12 DLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNI   91 (362)
T ss_dssp             HHHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTB
T ss_pred             HHHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCc
Confidence            34567888899999999999999999999999889999999996322211          13789999999999999999


Q ss_pred             ccceeeeeC-----CCceeEEeecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          331 LQLIGYCTT-----SSERILVYPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       331 v~l~g~~~~-----~~~~~lV~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      +++++++..     ....++||||++ |+|.+++......          .+++.||+|||+.+|
T Consensus        92 v~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  155 (362)
T 3pg1_A           92 LGLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHEAGV  155 (362)
T ss_dssp             CCCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCcC
Confidence            999999853     335799999998 6899888754321          348999999999875

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.53  E-value=4.3e-15  Score=138.30  Aligned_cols=111  Identities=20%  Similarity=0.297  Sum_probs=91.8

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc--CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY--YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~--~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      .++|+..+.||+|+||.||+|.. .+|+.||||++...  ......+.+.+|+.++.+++||||+++++++..++..++|
T Consensus        31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv  110 (310)
T 2wqm_A           31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV  110 (310)
T ss_dssp             GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence            35688899999999999999997 67899999999632  2233467799999999999999999999999999999999


Q ss_pred             eecccCCChhhhccccc----c---------cceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSH----K---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~----~---------~~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.+++....    .         ..+++.||+|||+.+|
T Consensus       111 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i  157 (310)
T 2wqm_A          111 LELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRRV  157 (310)
T ss_dssp             EECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCCe
Confidence            99999999999986421    1         1348899999999875

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.53  E-value=4.6e-15  Score=136.62  Aligned_cols=111  Identities=18%  Similarity=0.247  Sum_probs=95.1

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      .++|+..+.||+|+||.||+|.. .+++.||||++... ......+.+.+|++++.+++||||+++++++...+..++||
T Consensus        21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~  100 (287)
T 2wei_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG  100 (287)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEE
Confidence            45788899999999999999998 46899999998632 22345678999999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.+++......         .+++.||+|||+.+|
T Consensus       101 e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i  142 (287)
T 2wei_A          101 ELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNI  142 (287)
T ss_dssp             CCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            999999999988654332         348999999999875

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.53  E-value=2.4e-15  Score=141.14  Aligned_cols=106  Identities=25%  Similarity=0.204  Sum_probs=87.6

Q ss_pred             hcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCC----ceeE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS----ERIL  345 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~----~~~l  345 (380)
                      .++|+..++||+|+||.||+|+. .++.||||++...  ......+..|+.++.+++|||||++++++....    ..++
T Consensus        23 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~l   99 (322)
T 3soc_A           23 SMPLQLLEVKARGRFGCVWKAQL-LNEYVAVKIFPIQ--DKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWL   99 (322)
T ss_dssp             TEEEEEEEEEECSTTCEEEEEEE-TTEEEEEEEECGG--GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred             hhhchhhheecccCceEEEEEEE-CCCEEEEEEeecC--chHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEE
Confidence            46788899999999999999998 4899999999532  223455677999999999999999999998744    3699


Q ss_pred             EeecccCCChhhhcccccc--------cceeeeeecceeee
Q 016905          346 VYPFMQNLSVAYRLRVSHK--------IYTKIISLSSLHCF  378 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~  378 (380)
                      ||||+++|+|.++++....        ..+++.||+|||+.
T Consensus       100 v~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~al~~LH~~  140 (322)
T 3soc_A          100 ITAFHEKGSLSDFLKANVVSWNELCHIAETMARGLAYLHED  140 (322)
T ss_dssp             EEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             EEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999976432        23488999999987

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.53  E-value=2.7e-15  Score=142.54  Aligned_cols=110  Identities=25%  Similarity=0.281  Sum_probs=90.8

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC--CchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS--PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      .+.|+..+.||+|+||.||+|.. .+++.||||++.....  ....+.|.+|++++.+++||||+++++++..++..++|
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv  132 (348)
T 1u5q_A           53 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLV  132 (348)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hhheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEE
Confidence            34578889999999999999997 6789999999964322  22346789999999999999999999999999999999


Q ss_pred             eecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      |||++ |+|.+++.....          ..+++.||+|||+.+|
T Consensus       133 ~e~~~-g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i  175 (348)
T 1u5q_A          133 MEYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNM  175 (348)
T ss_dssp             EECCS-EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EecCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            99997 688888854322          1348899999999875

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.53  E-value=1.6e-14  Score=122.93  Aligned_cols=108  Identities=19%  Similarity=0.316  Sum_probs=93.0

Q ss_pred             EecCCCEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCC
Q 016905           72 TCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLK  151 (380)
Q Consensus        72 ~c~~~~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~  151 (380)
                      .|+   .+.|++++|.++. +|..+.  ++|+.|+|++|+|++..|..|+++++|++|+|++|+|++..|..|..+++|+
T Consensus         8 ~C~---~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~   81 (170)
T 3g39_A            8 SCS---GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT   81 (170)
T ss_dssp             EEE---TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CcC---CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCC
Confidence            464   4689999999985 777663  8999999999999999999999999999999999999977777789999999


Q ss_pred             EEECcCCcccccCcccc---ccccccccCCCccccCC
Q 016905          152 HLDLSSNNLTGRIPMQL---FSVATFNFTGTHLICGS  185 (380)
Q Consensus       152 ~L~ls~N~l~g~~p~~~---~~~~~~~~~gN~~lc~~  185 (380)
                      .|+|++|+|++..|..+   .++..+++.+|++.|.+
T Consensus        82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           82 QLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             EEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            99999999997666544   45577889999988753

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.53  E-value=1.7e-15  Score=139.89  Aligned_cols=111  Identities=19%  Similarity=0.284  Sum_probs=89.4

Q ss_pred             HhcCccccc-ccccCCCeeEEEEEe---CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCce
Q 016905          269 ATDNFSESN-IIGQGGFGKVYKGVL---SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSER  343 (380)
Q Consensus       269 ~~~~~~~~~-~lg~G~~g~Vy~~~~---~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~  343 (380)
                      ..+.|...+ .||+|+||.||+|.+   .+++.||||++.... .....+.|.+|++++.+++||||+++++++ ..+..
T Consensus        14 ~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~   92 (291)
T 1xbb_A           14 DRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESW   92 (291)
T ss_dssp             CGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSE
T ss_pred             cchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCc
Confidence            345666666 899999999999965   346899999996432 233467899999999999999999999999 55678


Q ss_pred             eEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ++||||+++|+|.++++.....         .+++.||+|||+.+|
T Consensus        93 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i  138 (291)
T 1xbb_A           93 MLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNF  138 (291)
T ss_dssp             EEEEECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEEEEeCCCCCHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999999999999999765432         348999999998874

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.53  E-value=1.9e-14  Score=122.99  Aligned_cols=103  Identities=18%  Similarity=0.267  Sum_probs=63.3

Q ss_pred             EEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECcCC
Q 016905           79 ISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSN  158 (380)
Q Consensus        79 ~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N  158 (380)
                      +.+++++|+++ .+|..+.  ++|+.|+|++|+|++..|..|+++++|++|+|++|+|++..|..|..+++|+.|||++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            45666666664 5555443  66667777777776666666666777777777777776544444566677777777777


Q ss_pred             cccccCcccc---ccccccccCCCccccC
Q 016905          159 NLTGRIPMQL---FSVATFNFTGTHLICG  184 (380)
Q Consensus       159 ~l~g~~p~~~---~~~~~~~~~gN~~lc~  184 (380)
                      +|++..|..+   .++..+.+.+|++.|.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            7664433323   3345556666666554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.53  E-value=1e-14  Score=131.88  Aligned_cols=104  Identities=22%  Similarity=0.285  Sum_probs=80.7

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      .++.|+|++|.+++..|..|.++++|++|+|++|.|++..|..+..+++|++|+|++|++++..|..|..+++|+.|+|+
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  115 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG  115 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence            57788888888888888788888888888888888888777778888888888888888886666777888888888888


Q ss_pred             CCcccccCcccc---ccccccccCCCc
Q 016905          157 SNNLTGRIPMQL---FSVATFNFTGTH  180 (380)
Q Consensus       157 ~N~l~g~~p~~~---~~~~~~~~~gN~  180 (380)
                      +|++++..|..+   .++..+.+.+|.
T Consensus       116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~  142 (251)
T 3m19_A          116 GNQLKSLPSGVFDRLTKLKELRLNTNQ  142 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCCCcChhHhccCCcccEEECcCCc
Confidence            888886555433   344555666664

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.53  E-value=5.5e-15  Score=136.21  Aligned_cols=107  Identities=22%  Similarity=0.287  Sum_probs=89.1

Q ss_pred             cccccccccCCCeeEEEEEe-CCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcCcCCCCccceeeeeC----CCceeEE
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT----SSERILV  346 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~----~~~~~lV  346 (380)
                      |...+.||+|+||.||+|.. .++..||+|.+... ......+.|.+|+.++.+++||||+++++++..    .+..++|
T Consensus        28 ~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv  107 (290)
T 1t4h_A           28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV  107 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEE
T ss_pred             EEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEEE
Confidence            56677899999999999998 56889999998643 233456789999999999999999999998864    3457999


Q ss_pred             eecccCCChhhhccccccc---------ceeeeeecceeeec
Q 016905          347 YPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFS  379 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~  379 (380)
                      |||+++|+|.+++......         .+++.||+|||+.+
T Consensus       108 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~  149 (290)
T 1t4h_A          108 TELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRT  149 (290)
T ss_dssp             EECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             EEecCCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999764332         34899999999987

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.53  E-value=3.5e-15  Score=139.84  Aligned_cols=110  Identities=15%  Similarity=0.289  Sum_probs=88.4

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-------CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCC
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-------SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS  341 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-------~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~  341 (380)
                      .++|...+.||+|+||.||+|.. .+++.||||.+....       .......|.+|++++.+++||||+++++++..++
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   88 (322)
T 2ycf_A            9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED   88 (322)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS
T ss_pred             hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc
Confidence            45688899999999999999998 568899999986321       1122345889999999999999999999987654


Q ss_pred             ceeEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          342 ERILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       342 ~~~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                       .++||||+++|+|.+++......         .+++.||+|||+.+|
T Consensus        89 -~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  135 (322)
T 2ycf_A           89 -YYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGI  135 (322)
T ss_dssp             -EEEEEECCTTEETHHHHSTTCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             -eEEEEecCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence             89999999999999998755433         348899999998875

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.53  E-value=5.6e-15  Score=137.62  Aligned_cols=101  Identities=24%  Similarity=0.380  Sum_probs=86.3

Q ss_pred             cCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      ++|+..+.||+|+||.||++.. .++.||||++..   ....+.|.+|++++.+++||||+++++++.  +..++||||+
T Consensus         8 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~---~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e~~   81 (307)
T 2eva_A            8 KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIES---ESERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEYA   81 (307)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEECSS---TTHHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEECC
T ss_pred             hHeeeeeEeecCCCceEEEEEE-CCeeEEEEEecC---hhHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEEcC
Confidence            4677789999999999999998 578999999853   335678999999999999999999999887  4589999999


Q ss_pred             cCCChhhhccccccc------------ceeeeeecceee
Q 016905          351 QNLSVAYRLRVSHKI------------YTKIISLSSLHC  377 (380)
Q Consensus       351 ~~GsL~~~L~~~~~~------------~~~~~aL~yLH~  377 (380)
                      ++|+|.++++.....            .+++.||+|||+
T Consensus        82 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~  120 (307)
T 2eva_A           82 EGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHS  120 (307)
T ss_dssp             TTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHh
Confidence            999999999865432            247789999998

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.53  E-value=3.6e-15  Score=137.71  Aligned_cols=109  Identities=19%  Similarity=0.294  Sum_probs=91.2

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeC---------
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT---------  339 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~---------  339 (380)
                      .++|+..+.||+|+||.||+|.. .+++.||||++..  .....+.+.+|++++.+++||||+++++++..         
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   82 (303)
T 1zy4_A            5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRH--TEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMT   82 (303)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEE--EHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC---
T ss_pred             cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEec--cHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhc
Confidence            45688899999999999999998 5789999999953  23346789999999999999999999998854         


Q ss_pred             ----CCceeEEeecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          340 ----SSERILVYPFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       340 ----~~~~~lV~Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                          .+..++||||+++|+|.++++....          ..+++.||+|||+.+|
T Consensus        83 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i  137 (303)
T 1zy4_A           83 AVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHSQGI  137 (303)
T ss_dssp             ---CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHHhCCe
Confidence                3457899999999999999975332          2358999999999875

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.53  E-value=4.4e-15  Score=139.71  Aligned_cols=111  Identities=19%  Similarity=0.343  Sum_probs=93.0

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC-CchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS-PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      .++|+..+.||+|+||.||+|.. .+|+.||||++..... ....+.+.+|++++.+++||||+++++++...+..++||
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  103 (331)
T 4aaa_A           24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF  103 (331)
T ss_dssp             GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEE
Confidence            45678889999999999999998 4589999999864322 223566889999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++++|.+++......         .+++.||+|||+.||
T Consensus       104 e~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i  145 (331)
T 4aaa_A          104 EFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSHNI  145 (331)
T ss_dssp             ECCSEEHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ecCCcchHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            999999999886543332         348999999999875

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.53  E-value=2.4e-15  Score=141.18  Aligned_cols=110  Identities=21%  Similarity=0.308  Sum_probs=89.3

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcE----EEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCcee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTK----VAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~----vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~  344 (380)
                      .++|+..+.||+|+||.||+|.. .+++.    ||+|.+.........+.+.+|+.++.+++||||+++++++. ++..+
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~   90 (325)
T 3kex_A           12 ETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQ   90 (325)
T ss_dssp             TTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEE
T ss_pred             HhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccE
Confidence            34677889999999999999997 44543    88888864433444567889999999999999999999986 45688


Q ss_pred             EEeecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      +||||+++|+|.++++.....          .+++.||+|||+.+|
T Consensus        91 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  136 (325)
T 3kex_A           91 LVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHGM  136 (325)
T ss_dssp             EEEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999764221          348999999999876

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.53  E-value=7.3e-14  Score=126.25  Aligned_cols=104  Identities=21%  Similarity=0.289  Sum_probs=65.2

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++..|..|.++++|++|+|++|+|++..|..++.+++|++|+|++|++++..|..|..+++|+.|+|+
T Consensus        60 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  139 (251)
T 3m19_A           60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN  139 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECc
Confidence            56667777777766666666666777777777777665555666666666666666666665444456666666666666


Q ss_pred             CCcccccCccccc---cccccccCCCc
Q 016905          157 SNNLTGRIPMQLF---SVATFNFTGTH  180 (380)
Q Consensus       157 ~N~l~g~~p~~~~---~~~~~~~~gN~  180 (380)
                      +|++++..|..+.   ++..+++.+|.
T Consensus       140 ~N~l~~~~~~~~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A          140 TNQLQSIPAGAFDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCCccCHHHcCcCcCCCEEECCCCc
Confidence            6666654443332   33444555554

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.53  E-value=4.8e-15  Score=136.98  Aligned_cols=112  Identities=20%  Similarity=0.224  Sum_probs=93.7

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC--------CchHHHHHHHHHHHhcCc-CCCCccceeeee
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS--------PGGEAAFQREVHLISVAI-HKNLLQLIGYCT  338 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--------~~~~~~f~~e~~~l~~l~-H~Niv~l~g~~~  338 (380)
                      -.++|+..+.||+|+||.||+|.. .+|+.||||++.....        ....+.+.+|++++.+++ ||||+++++++.
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~   94 (298)
T 1phk_A           15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE   94 (298)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred             hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence            346788899999999999999998 5689999999963221        112467889999999996 999999999999


Q ss_pred             CCCceeEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          339 TSSERILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       339 ~~~~~~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      .++..++||||+++|+|.+++......         .+++.||+|||+++|
T Consensus        95 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  145 (298)
T 1phk_A           95 TNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNI  145 (298)
T ss_dssp             CSSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             cCCeEEEEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            999999999999999999999764332         348999999998874

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.52  E-value=1.2e-15  Score=142.35  Aligned_cols=109  Identities=21%  Similarity=0.232  Sum_probs=88.1

Q ss_pred             cCcccccccccCCCeeEEEEEeC-CCcEEEEEEecccC-CCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYY-SPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|+..++||+|+||+||+|... +|+.||||++.... .......+..|+..+.++ +||||++++++|..++..++||
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~  136 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT  136 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence            56888999999999999999984 79999999986432 222344566677666665 8999999999999999999999


Q ss_pred             ecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      ||+ +|+|.+++.....          ..+++.||+|||+.+|
T Consensus       137 e~~-~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i  178 (311)
T 3p1a_A          137 ELC-GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGL  178 (311)
T ss_dssp             ECC-CCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             ecc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            999 6799998875432          1348999999998874

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.52  E-value=3.5e-15  Score=141.07  Aligned_cols=110  Identities=22%  Similarity=0.262  Sum_probs=91.9

Q ss_pred             hcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCC--c--------------hHHHHHHHHHHHhcCcCCCCccc
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSP--G--------------GEAAFQREVHLISVAIHKNLLQL  333 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~--~--------------~~~~f~~e~~~l~~l~H~Niv~l  333 (380)
                      .++|+..+.||+|+||.||+|.. +++.||||++......  .              ..+.|.+|++++.+++||||+++
T Consensus        30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~  108 (348)
T 2pml_X           30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC  108 (348)
T ss_dssp             ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred             cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence            45788899999999999999999 9999999999632111  1              11789999999999999999999


Q ss_pred             eeeeeCCCceeEEeecccCCChhhh------cccc--ccc---------ceeeeeecceee-ecC
Q 016905          334 IGYCTTSSERILVYPFMQNLSVAYR------LRVS--HKI---------YTKIISLSSLHC-FSL  380 (380)
Q Consensus       334 ~g~~~~~~~~~lV~Ey~~~GsL~~~------L~~~--~~~---------~~~~~aL~yLH~-~~i  380 (380)
                      ++++...+..++||||+++|+|.++      ++..  ...         .+++.||+|||+ .||
T Consensus       109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i  173 (348)
T 2pml_X          109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNI  173 (348)
T ss_dssp             SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTSCE
T ss_pred             EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccCCE
Confidence            9999999999999999999999999      6542  111         348999999998 664

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.52  E-value=5.2e-15  Score=135.73  Aligned_cols=111  Identities=20%  Similarity=0.322  Sum_probs=91.4

Q ss_pred             HhcCcccccccccCCCeeEEEEEeCC----CcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCcee
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVLSD----NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~~~----g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~  344 (380)
                      ..++|...+.||+|+||.||+|+...    +..||||.+.........+.|.+|++++.+++||||+++++++.. +..+
T Consensus        10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~   88 (281)
T 3cc6_A           10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTW   88 (281)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCE
T ss_pred             cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCE
Confidence            35678888999999999999998722    346999999754444457889999999999999999999999865 4578


Q ss_pred             EEeecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      +||||+++|+|.++++.....          .+++.||+|||+.+|
T Consensus        89 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  134 (281)
T 3cc6_A           89 IIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINC  134 (281)
T ss_dssp             EEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            999999999999999754321          348999999999875

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.52  E-value=1.4e-15  Score=142.87  Aligned_cols=109  Identities=21%  Similarity=0.333  Sum_probs=88.8

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      ++|...+.||+|+||.||+|.. .+++.||||++...........+.+|++++.+++||||+++++++..++..++||||
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY   81 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence            4688889999999999999998 478999999996433332333566899999999999999999999999999999999


Q ss_pred             ccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      ++ |+|.+++.....          ..+++.||+|||+.||
T Consensus        82 ~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i  121 (324)
T 3mtl_A           82 LD-KDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQKV  121 (324)
T ss_dssp             CS-EEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             cc-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            97 599998875433          1358999999998875

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.52  E-value=4.3e-15  Score=148.93  Aligned_cols=110  Identities=20%  Similarity=0.301  Sum_probs=93.3

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|...++||+|+||.||+++. .+|+.||+|++....  .....+.+.+|++++.+++||||+++++++...+..++||
T Consensus       185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm  264 (543)
T 3c4z_A          185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVM  264 (543)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEE
Confidence            5688889999999999999998 569999999996321  1234567899999999999999999999999999999999


Q ss_pred             ecccCCChhhhcccccc-------------cceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHK-------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~-------------~~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.+++.....             ..+++.||+|||++||
T Consensus       265 E~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~gI  310 (543)
T 3c4z_A          265 TIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNI  310 (543)
T ss_dssp             CCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999875321             1348999999999875

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.52  E-value=4.3e-15  Score=135.94  Aligned_cols=110  Identities=18%  Similarity=0.230  Sum_probs=91.4

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeC--CCceeE
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTT--SSERIL  345 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~--~~~~~l  345 (380)
                      .++|+..+.||+|+||.||++.. .+++.||+|++.... .....+.|.+|++++.+++||||+++++++..  .+..++
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   84 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI   84 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred             hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence            35788889999999999999998 578999999996432 23346779999999999999999999998753  567899


Q ss_pred             EeecccCCChhhhcccccc-------------cceeeeeecceeeec
Q 016905          346 VYPFMQNLSVAYRLRVSHK-------------IYTKIISLSSLHCFS  379 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~-------------~~~~~~aL~yLH~~~  379 (380)
                      ||||+++|+|.+++.....             ..+++.||+|||+.+
T Consensus        85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~  131 (279)
T 2w5a_A           85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRS  131 (279)
T ss_dssp             EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999975321             134899999999876

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.52  E-value=5.7e-15  Score=138.66  Aligned_cols=110  Identities=19%  Similarity=0.240  Sum_probs=91.1

Q ss_pred             hcCcccccccccCCCeeEEEEEe-----CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeC--CCc
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-----SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT--SSE  342 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-----~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~--~~~  342 (380)
                      .++|+..+.||+|+||.||++.+     .+++.||||++... .....+.|.+|++++.+++||||+++++++..  .+.
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~  100 (327)
T 3lxl_A           22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHS-GPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQS  100 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSC-CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCE
T ss_pred             hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccC-CHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCce
Confidence            35678889999999999999984     46889999999642 33446779999999999999999999998874  456


Q ss_pred             eeEEeecccCCChhhhcccccc-c---------ceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHK-I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~-~---------~~~~~aL~yLH~~~i  380 (380)
                      .++||||+++|+|.+++..... .         .+++.||+|||+.+|
T Consensus       101 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i  148 (327)
T 3lxl_A          101 LRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRC  148 (327)
T ss_dssp             EEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEEEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            8899999999999999975322 1         348999999999875

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.52  E-value=6.1e-15  Score=150.93  Aligned_cols=103  Identities=20%  Similarity=0.307  Sum_probs=86.1

Q ss_pred             cccccCCCeeEEEEEe---CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccC
Q 016905          277 NIIGQGGFGKVYKGVL---SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQN  352 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~---~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~  352 (380)
                      +.||+|+||.||+|.+   ..++.||||+++... .....++|.+|+++|.+++|||||+++++|.. +..++|||||++
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~  453 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL  453 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence            4799999999999976   346789999997432 23346889999999999999999999999964 468899999999


Q ss_pred             CChhhhccccccc---------ceeeeeecceeeecC
Q 016905          353 LSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       353 GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+|.++++.....         .+++.||+|||+++|
T Consensus       454 g~L~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~i  490 (635)
T 4fl3_A          454 GPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNF  490 (635)
T ss_dssp             EEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            9999999765433         348999999999886

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.52  E-value=2.1e-14  Score=145.99  Aligned_cols=111  Identities=21%  Similarity=0.194  Sum_probs=93.3

Q ss_pred             eeEecCC-----------CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccc
Q 016905           70 HVTCRNG-----------NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSG  138 (380)
Q Consensus        70 gv~c~~~-----------~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g  138 (380)
                      .+.|++.           .++.|||++|+|++..|.+|.++++|++|+|++|+|++..|..|.++++|++|+|++|+|++
T Consensus        35 ~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~  114 (635)
T 4g8a_A           35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS  114 (635)
T ss_dssp             EEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             EEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC
Confidence            4778753           68999999999998888899999999999999999998778889999999999999999997


Q ss_pred             cCCccccCCCCCCEEECcCCcccccCccccc---cccccccCCCc
Q 016905          139 SIPATWSQLSNLKHLDLSSNNLTGRIPMQLF---SVATFNFTGTH  180 (380)
Q Consensus       139 ~iP~~~~~l~~L~~L~ls~N~l~g~~p~~~~---~~~~~~~~gN~  180 (380)
                      ..|..|.++++|++|+|++|++++..|..+.   ++..+++.+|.
T Consensus       115 l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~  159 (635)
T 4g8a_A          115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL  159 (635)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred             CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc
Confidence            6667899999999999999999876655444   34455566654

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.52  E-value=6.7e-15  Score=144.86  Aligned_cols=110  Identities=15%  Similarity=0.319  Sum_probs=82.5

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCC-----Cc
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS-----SE  342 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~-----~~  342 (380)
                      .++|+..++||+|+||.||+|.. .+++.||||++.... .....+.+.+|++++.+++|||||++++++...     +.
T Consensus        52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~  131 (458)
T 3rp9_A           52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE  131 (458)
T ss_dssp             CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence            36788999999999999999998 578999999996432 223457799999999999999999999999543     56


Q ss_pred             eeEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      .++||||+. |+|.++++.....         .+++.||+|||+.+|
T Consensus       132 ~~lv~e~~~-~~L~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~i  177 (458)
T 3rp9_A          132 LYVVLEIAD-SDFKKLFRTPVYLTELHIKTLLYNLLVGVKYVHSAGI  177 (458)
T ss_dssp             EEEEECCCS-EEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEEeccc-cchhhhcccCCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            899999985 7999998765432         348999999999886

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.52  E-value=5.8e-15  Score=138.22  Aligned_cols=113  Identities=23%  Similarity=0.368  Sum_probs=85.8

Q ss_pred             HHhcCcccccccccCCCeeEEEEEeCC-C---cEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCc
Q 016905          268 LATDNFSESNIIGQGGFGKVYKGVLSD-N---TKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSE  342 (380)
Q Consensus       268 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~-g---~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~  342 (380)
                      ...++|+..+.||+|+||.||+|.... +   ..||||++.... .....+.|.+|++++.+++||||+++++++...+.
T Consensus        20 i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   99 (323)
T 3qup_A           20 IPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRA   99 (323)
T ss_dssp             CC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC--
T ss_pred             cChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecccc
Confidence            355678889999999999999999843 3   279999996432 33456789999999999999999999999987665


Q ss_pred             e------eEEeecccCCChhhhcccccc---------------cceeeeeecceeeecC
Q 016905          343 R------ILVYPFMQNLSVAYRLRVSHK---------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~------~lV~Ey~~~GsL~~~L~~~~~---------------~~~~~~aL~yLH~~~i  380 (380)
                      .      ++||||+++|+|.+++.....               ..+++.||+|||+.+|
T Consensus       100 ~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~i  158 (323)
T 3qup_A          100 KGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRNF  158 (323)
T ss_dssp             -----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCCc
Confidence            5      999999999999999864321               1348899999999875

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.51  E-value=4.7e-15  Score=138.35  Aligned_cols=110  Identities=22%  Similarity=0.300  Sum_probs=89.9

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeee----CCCcee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCT----TSSERI  344 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~----~~~~~~  344 (380)
                      .++|+..+.||+|+||.||++.. .+++.||||++.. ......+.+.+|++++.+++||||+++++++.    .....+
T Consensus        28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~  106 (317)
T 2buj_A           28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILC-HEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAW  106 (317)
T ss_dssp             TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEE-SSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEE
T ss_pred             CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEec-CCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeE
Confidence            46788899999999999999998 6799999999853 23345678999999999999999999999987    334688


Q ss_pred             EEeecccCCChhhhcccc----cc---------cceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVS----HK---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~----~~---------~~~~~~aL~yLH~~~i  380 (380)
                      +||||+++|+|.+++...    ..         ..+++.||+|||+.+|
T Consensus       107 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~i  155 (317)
T 2buj_A          107 LLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKGY  155 (317)
T ss_dssp             EEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999999999999998752    11         1348999999998874

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.51  E-value=2.8e-14  Score=121.91  Aligned_cols=98  Identities=21%  Similarity=0.281  Sum_probs=86.1

Q ss_pred             CceeeEecCC-----------CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCcc
Q 016905           67 SWSHVTCRNG-----------NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK  135 (380)
Q Consensus        67 ~w~gv~c~~~-----------~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~  135 (380)
                      ....+.|++.           +++.|+|++|.|++..|..|+++++|++|+|++|+|++..|..|.++++|++|+|++|+
T Consensus        13 ~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           13 DQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             CSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            4555666643           68999999999999999999999999999999999997666668999999999999999


Q ss_pred             ccccCCccccCCCCCCEEECcCCcccccC
Q 016905          136 FSGSIPATWSQLSNLKHLDLSSNNLTGRI  164 (380)
Q Consensus       136 l~g~iP~~~~~l~~L~~L~ls~N~l~g~~  164 (380)
                      |++..|..|..+++|+.|+|++|.++...
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             cceeCHHHhccccCCCEEEeCCCCccccc
Confidence            99665566999999999999999998654

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.51  E-value=2.2e-15  Score=143.45  Aligned_cols=111  Identities=17%  Similarity=0.233  Sum_probs=93.3

Q ss_pred             hcCcccccccccCCCeeEEEEEe----CCCcEEEEEEecccC---CCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCC
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL----SDNTKVAVKRLQDYY---SPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSS  341 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~----~~g~~vavK~l~~~~---~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~  341 (380)
                      .++|+..+.||+|+||.||++..    .+++.||||++....   .....+.+.+|++++.++ +||||+++++++...+
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~  132 (355)
T 1vzo_A           53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET  132 (355)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred             ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence            35788899999999999999997    478999999986321   122356678899999999 6999999999999999


Q ss_pred             ceeEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          342 ERILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       342 ~~~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ..++||||+++|+|.+++......         .+++.||+|||+.+|
T Consensus       133 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i  180 (355)
T 1vzo_A          133 KLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLGI  180 (355)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eEEEEeecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            999999999999999999765432         348999999999875

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.51  E-value=1e-14  Score=139.41  Aligned_cols=115  Identities=21%  Similarity=0.239  Sum_probs=95.3

Q ss_pred             HHHHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCC-------chHHHHHHHHHHHhcC-cCCCCccceee
Q 016905          266 LQLATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSP-------GGEAAFQREVHLISVA-IHKNLLQLIGY  336 (380)
Q Consensus       266 l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-------~~~~~f~~e~~~l~~l-~H~Niv~l~g~  336 (380)
                      .....++|+..+.||+|+||.||+|+. .+|+.||||++......       ...+.+.+|+.++.++ +||||++++++
T Consensus        89 ~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~  168 (365)
T 2y7j_A           89 AKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDS  168 (365)
T ss_dssp             HHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEE
T ss_pred             hhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEE
Confidence            344556788899999999999999998 47999999998643211       1145688999999999 79999999999


Q ss_pred             eeCCCceeEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          337 CTTSSERILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       337 ~~~~~~~~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +...+..++||||+++|+|.+++......         .+++.||+|||+.||
T Consensus       169 ~~~~~~~~lv~e~~~g~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~gi  221 (365)
T 2y7j_A          169 YESSSFMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLHANNI  221 (365)
T ss_dssp             EEBSSEEEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EeeCCEEEEEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            99999999999999999999999754332         348999999999875

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.51  E-value=1e-14  Score=136.90  Aligned_cols=110  Identities=20%  Similarity=0.285  Sum_probs=91.0

Q ss_pred             hcCcccccccccCCCeeEEEEEe-----CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCC--c
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-----SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS--E  342 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-----~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~--~  342 (380)
                      .++|+..+.||+|+||.||++.+     .+++.||||++... .....+.|.+|++++.+++||||+++++++...+  .
T Consensus        40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  118 (326)
T 2w1i_A           40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS-TEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRN  118 (326)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSC-CSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----C
T ss_pred             HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccC-CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCc
Confidence            34577889999999999999984     46889999999642 3445678999999999999999999999987654  6


Q ss_pred             eeEEeecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      .++||||+++|+|.++++....          ..+++.||+|||+.+|
T Consensus       119 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i  166 (326)
T 2w1i_A          119 LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY  166 (326)
T ss_dssp             CEEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             eEEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            7999999999999999976432          1348999999998874

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.51  E-value=7.6e-15  Score=138.92  Aligned_cols=109  Identities=17%  Similarity=0.241  Sum_probs=92.6

Q ss_pred             cCcccccccccCCCeeEEEEEeCCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcC--CCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIH--KNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H--~Niv~l~g~~~~~~~~~lV~  347 (380)
                      +.|+..+.||+|+||.||++...+++.||||++.... .....+.|.+|++++.+++|  |||+++++++..++..++||
T Consensus         9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~   88 (343)
T 3dbq_A            9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM   88 (343)
T ss_dssp             CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEE
Confidence            4578889999999999999999889999999986332 23345789999999999976  99999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      || .+|+|.+++......         .+++.||+|||+.+|
T Consensus        89 e~-~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~i  129 (343)
T 3dbq_A           89 EC-GNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGI  129 (343)
T ss_dssp             CC-CSEEHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eC-CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            95 588999999865443         348999999999876

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.51  E-value=4.9e-15  Score=141.39  Aligned_cols=108  Identities=11%  Similarity=0.184  Sum_probs=89.9

Q ss_pred             HhcCcccccccccCCCeeEEEEE------eCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCc---CCCCccceeeeeC
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGV------LSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI---HKNLLQLIGYCTT  339 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~------~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~---H~Niv~l~g~~~~  339 (380)
                      ..+.|...+.||+|+||.||+|+      ..+++.||||++...    ...+|..|++++.+++   |+||+++++++..
T Consensus        63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~----~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~  138 (365)
T 3e7e_A           63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA----NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLF  138 (365)
T ss_dssp             SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC----CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEEC
T ss_pred             CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC----ChhHHHHHHHHHHHhhhhhhhhhhhhheeeec
Confidence            45678889999999999999994      356889999999532    3567888888888886   9999999999999


Q ss_pred             CCceeEEeecccCCChhhhcccc-----cc---------cceeeeeecceeeecC
Q 016905          340 SSERILVYPFMQNLSVAYRLRVS-----HK---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       340 ~~~~~lV~Ey~~~GsL~~~L~~~-----~~---------~~~~~~aL~yLH~~~i  380 (380)
                      ++..++|||||++|+|.++++..     ..         ..+++.||+|||+.+|
T Consensus       139 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~i  193 (365)
T 3e7e_A          139 QNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCEI  193 (365)
T ss_dssp             SSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred             CCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCCe
Confidence            99999999999999999999742     11         1348999999999875

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.51  E-value=1.2e-14  Score=136.68  Aligned_cols=110  Identities=24%  Similarity=0.375  Sum_probs=91.4

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCc----EEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCcee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNT----KVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~----~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~  344 (380)
                      .++|+..+.||+|+||.||+|.. .+++    .||+|.+.........+.|.+|+.++.+++||||+++++++...+ .+
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~   92 (327)
T 3lzb_A           14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ   92 (327)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EE
T ss_pred             HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ce
Confidence            45688899999999999999997 3454    368888865445556788999999999999999999999998754 78


Q ss_pred             EEeecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      +|+||+++|+|.++++.....          .+++.||+|||+.+|
T Consensus        93 ~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i  138 (327)
T 3lzb_A           93 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL  138 (327)
T ss_dssp             EEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCCC
Confidence            999999999999999764321          348999999999875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.51  E-value=1.9e-14  Score=146.41  Aligned_cols=109  Identities=27%  Similarity=0.374  Sum_probs=99.1

Q ss_pred             CEEEEEeCCCCC-ccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEEC
Q 016905           77 NVISLTLGSNGF-SGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~l-~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~l  155 (380)
                      .++.|+|++|.+ .+.+|..|..+++|++|+|++|+|++..|..|+++++|+.|+|++|+|++..|..|..+++|+.|||
T Consensus       470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  549 (635)
T 4g8a_A          470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY  549 (635)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred             hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence            788999999975 4567788999999999999999999999999999999999999999999988999999999999999


Q ss_pred             cCCcccccCccccc----cccccccCCCccccCC
Q 016905          156 SSNNLTGRIPMQLF----SVATFNFTGTHLICGS  185 (380)
Q Consensus       156 s~N~l~g~~p~~~~----~~~~~~~~gN~~lc~~  185 (380)
                      ++|+|++..|..+.    ++..+++.+||+.|++
T Consensus       550 s~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          550 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  583 (635)
T ss_dssp             TTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred             CCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence            99999999998775    4567889999999974

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.51  E-value=3e-15  Score=141.39  Aligned_cols=112  Identities=16%  Similarity=0.188  Sum_probs=93.6

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC-------CchHHHHHHHHHHHhcCcCCCCccceeeeeCC
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS-------PGGEAAFQREVHLISVAIHKNLLQLIGYCTTS  340 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-------~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~  340 (380)
                      ..++|+..+.||+|+||.||+|.. .+++.||||++.....       ....+.+.+|++++.+++||||+++++++...
T Consensus        22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~  101 (335)
T 3dls_A           22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ  101 (335)
T ss_dssp             HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred             cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence            346788899999999999999997 6789999999964321       11345678899999999999999999999999


Q ss_pred             CceeEEeecccCC-Chhhhccccccc---------ceeeeeecceeeecC
Q 016905          341 SERILVYPFMQNL-SVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       341 ~~~~lV~Ey~~~G-sL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +..++||||+..| +|.+++......         .+++.||+|||+.+|
T Consensus       102 ~~~~lv~e~~~~g~~l~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~i  151 (335)
T 3dls_A          102 GFFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLRLKDI  151 (335)
T ss_dssp             SEEEEEEECCTTSCBHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             CEEEEEEEeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999999999887 999999765433         348999999998875

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=99.51  E-value=1e-14  Score=134.84  Aligned_cols=109  Identities=24%  Similarity=0.388  Sum_probs=89.6

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      ++|+..+.||+|+||.||+|.. .+|+.||||++.... .....+.+.+|++++.+++||||+++++++..++..++|||
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (299)
T 2r3i_A            3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   82 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence            5788889999999999999998 468999999986322 22335778999999999999999999999999999999999


Q ss_pred             cccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      |++ |+|.+++.....           ..+++.||+|||+.||
T Consensus        83 ~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  124 (299)
T 2r3i_A           83 FLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRV  124 (299)
T ss_dssp             CCS-EEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccc-CCHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            998 699999875421           1358999999999875

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.50  E-value=2.6e-14  Score=135.38  Aligned_cols=108  Identities=17%  Similarity=0.242  Sum_probs=53.5

Q ss_pred             CCCceeeEecCCCEEEEEeCCCCCccccchhHhCCccCCeEEcCC-CcCcccCChhhhCCcccCeeeccCccccccCCcc
Q 016905           65 CFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQD-NDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPAT  143 (380)
Q Consensus        65 c~~w~gv~c~~~~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~  143 (380)
                      | .|..|.|++.         |+|++ +|. |..+++|+.|+|++ |+|++..|..|++|++|+.|+|++|+|+|..|..
T Consensus         8 C-~~~~v~~~~~---------n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~   75 (347)
T 2ifg_A            8 H-GSSGLRCTRD---------GALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA   75 (347)
T ss_dssp             S-SSSCEECCSS---------CCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTG
T ss_pred             c-cCCEEEcCCC---------CCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHH
Confidence            5 7877777642         13442 444 55555555555553 5555444445555555555555555555555555


Q ss_pred             ccCCCCCCEEECcCCcccccCcccccc--ccccccCCCccccC
Q 016905          144 WSQLSNLKHLDLSSNNLTGRIPMQLFS--VATFNFTGTHLICG  184 (380)
Q Consensus       144 ~~~l~~L~~L~ls~N~l~g~~p~~~~~--~~~~~~~gN~~lc~  184 (380)
                      |.+|++|+.|||++|+|++..|..+..  +..+.+.+|++.|.
T Consensus        76 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           76 FHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCS  118 (347)
T ss_dssp             GGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred             hcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCccCC
Confidence            555555555555555555332222211  33444445544443

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.50  E-value=8.9e-15  Score=136.29  Aligned_cols=109  Identities=18%  Similarity=0.323  Sum_probs=87.6

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ..+.|+..+.||+|+||.||+|.. .+|+.||||.+...   ...+.+.+|+.++.+++||||+++++++...+..++||
T Consensus        27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~  103 (314)
T 3com_A           27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVE---SDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVM  103 (314)
T ss_dssp             ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETT---SCCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCch---HHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEe
Confidence            456788899999999999999998 45899999999642   23567899999999999999999999999999999999


Q ss_pred             ecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.+++.....          ..+++.||.|||+.+|
T Consensus       104 e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i  146 (314)
T 3com_A          104 EYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFMRK  146 (314)
T ss_dssp             ECCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             ecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999863221          1348899999998874

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.50  E-value=3.1e-15  Score=140.17  Aligned_cols=118  Identities=21%  Similarity=0.308  Sum_probs=96.0

Q ss_pred             eCHHHHHHHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeee
Q 016905          261 FSCRELQLATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCT  338 (380)
Q Consensus       261 ~~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~  338 (380)
                      +++.++....+.|+..+.||+|+||.||+|.. .+++.||||++...  ....+.+.+|+.++.++ +||||+++++++.
T Consensus        14 ~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~--~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~   91 (326)
T 2x7f_A           14 IDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVT--GDEEEEIKQEINMLKKYSHHRNIATYYGAFI   91 (326)
T ss_dssp             --CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC--SSTTHHHHHHHHHHHHHCCSTTBCCEEEEEE
T ss_pred             ccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecC--cccHHHHHHHHHHHHhccCCCCeeeeeeEEe
Confidence            33344445678899999999999999999998 57899999998532  23457899999999999 8999999999997


Q ss_pred             C------CCceeEEeecccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          339 T------SSERILVYPFMQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       339 ~------~~~~~lV~Ey~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      .      .+..++||||+++|+|.+++.....           ..+++.||+|||+.||
T Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i  150 (326)
T 2x7f_A           92 KKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKV  150 (326)
T ss_dssp             ECC--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eccCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            6      4578999999999999999975321           1348999999999875

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.50  E-value=5.3e-14  Score=128.78  Aligned_cols=105  Identities=27%  Similarity=0.316  Sum_probs=75.7

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++..+..|+++++|++|+|++|++++..|..++.+++|++|+|++|++++..|..|..+++|+.|+++
T Consensus        86 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  165 (272)
T 3rfs_A           86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS  165 (272)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC
Confidence            67788888888877766667778888888888888877666667777888888888888876666667777788888888


Q ss_pred             CCcccccCcccc---ccccccccCCCcc
Q 016905          157 SNNLTGRIPMQL---FSVATFNFTGTHL  181 (380)
Q Consensus       157 ~N~l~g~~p~~~---~~~~~~~~~gN~~  181 (380)
                      +|++++..|..+   .++..+++.+|..
T Consensus       166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          166 YNQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCcCccCHHHhcCCccCCEEECCCCcC
Confidence            887776555433   3345555666543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.50  E-value=3.5e-14  Score=133.73  Aligned_cols=104  Identities=23%  Similarity=0.348  Sum_probs=87.8

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.++ .+|..++++++|++|+|++|.+++ +|+.++.+++|+.|+|++|++.+.+|..++.+++|+.|+|+
T Consensus       184 ~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~  261 (328)
T 4fcg_A          184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK  261 (328)
T ss_dssp             TCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred             CCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence            7888999999988 888889999999999999999984 77778889999999999999999999989999999999999


Q ss_pred             CCcccccCccccccc---cccccCCCccc
Q 016905          157 SNNLTGRIPMQLFSV---ATFNFTGTHLI  182 (380)
Q Consensus       157 ~N~l~g~~p~~~~~~---~~~~~~gN~~l  182 (380)
                      +|++.+.+|..+..+   ..+++.+|+.+
T Consensus       262 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~  290 (328)
T 4fcg_A          262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNL  290 (328)
T ss_dssp             TCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred             CCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence            998888888776544   55667776654

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.50  E-value=9.9e-15  Score=142.67  Aligned_cols=110  Identities=16%  Similarity=0.306  Sum_probs=92.1

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCC-----Cc
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS-----SE  342 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~-----~~  342 (380)
                      .++|+..+.||+|+||.||+|.. .+++.||||++.... .....+.+.+|++++.+++||||+++++++...     +.
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  104 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE  104 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence            46788899999999999999998 568899999996432 223457899999999999999999999999765     56


Q ss_pred             eeEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      .++||||++ |+|.++++.....         .+++.||+|||+.||
T Consensus       105 ~~lv~e~~~-~~L~~~~~~~~~l~~~~~~~i~~qil~aL~~LH~~gi  150 (432)
T 3n9x_A          105 LYIVLEIAD-SDLKKLFKTPIFLTEEHIKTILYNLLLGENFIHESGI  150 (432)
T ss_dssp             EEEEEECCS-EEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEEEEecCC-cCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence            899999997 6999999765432         349999999999875

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.49  E-value=5e-15  Score=140.86  Aligned_cols=118  Identities=18%  Similarity=0.203  Sum_probs=98.4

Q ss_pred             eeCHHHHHHHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCc-----CCCCccc
Q 016905          260 RFSCRELQLATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI-----HKNLLQL  333 (380)
Q Consensus       260 ~~~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~-----H~Niv~l  333 (380)
                      .+++++.....++|+..+.||+|+||.||+|.. .+++.||||++..  .....+.+..|++++.+++     ||||+++
T Consensus        24 ~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~--~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~  101 (360)
T 3llt_A           24 HFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRN--IKKYTRSAKIEADILKKIQNDDINNNNIVKY  101 (360)
T ss_dssp             SCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS--CHHHHHHHHHHHHHHHHTCCCSTTGGGBCCE
T ss_pred             eeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEecc--chhhhhhhHHHHHHHHHhcccCCCCCCeecc
Confidence            355555555678899999999999999999998 6789999999953  2334567888999999886     9999999


Q ss_pred             eeeeeCCCceeEEeecccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          334 IGYCTTSSERILVYPFMQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       334 ~g~~~~~~~~~lV~Ey~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      ++++...+..++||||+ +|+|.+++.....           ..+++.||+|||+.+|
T Consensus       102 ~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i  158 (360)
T 3llt_A          102 HGKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMSL  158 (360)
T ss_dssp             EEEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             cceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            99999999999999999 8999999976432           1348999999999875

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.49  E-value=1.5e-14  Score=134.70  Aligned_cols=109  Identities=20%  Similarity=0.320  Sum_probs=84.8

Q ss_pred             hcCcccccccccCCCeeEEEEEeC-CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeee----------
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCT----------  338 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~----------  338 (380)
                      .++|+..+.||+|+||.||+|... +++.||||++... .....+.+.+|++++.+++||||+++++++.          
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   88 (320)
T 2i6l_A           10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLT-DPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDV   88 (320)
T ss_dssp             TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECC-SHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC--
T ss_pred             CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecC-ChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccccc
Confidence            356888899999999999999984 5899999998532 3345678999999999999999999999874          


Q ss_pred             ----CCCceeEEeecccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          339 ----TSSERILVYPFMQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       339 ----~~~~~~lV~Ey~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                          ..+..++||||++ |+|.++++....        ..+++.||+|||+.||
T Consensus        89 ~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  141 (320)
T 2i6l_A           89 GSLTELNSVYIVQEYME-TDLANVLEQGPLLEEHARLFMYQLLRGLKYIHSANV  141 (320)
T ss_dssp             --CCSCSEEEEEEECCS-EEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccCceeEEeeccC-CCHHHHhhcCCccHHHHHHHHHHHHHHHHHHHhCCE
Confidence                3456899999998 699999875322        2348999999999875

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.49  E-value=8e-15  Score=137.87  Aligned_cols=107  Identities=18%  Similarity=0.190  Sum_probs=90.1

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeEEe
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      .++|+..+.||+|+||.||+|.. .+++.||||.+....   ..+.+.+|++++.++ +||||+++++++..++..++||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~   84 (330)
T 2izr_A            8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKS---RAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVL   84 (330)
T ss_dssp             TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTC---SSCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEE
T ss_pred             cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEecccc---chHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEE
Confidence            35788899999999999999997 678999999985332   234688999999999 9999999999999999999999


Q ss_pred             ecccCCChhhhcccccc-c---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHK-I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~-~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+ +|+|.+++..... .         .+++.||+|||+.+|
T Consensus        85 e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i  126 (330)
T 2izr_A           85 ELL-GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNL  126 (330)
T ss_dssp             ECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EeC-CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            999 9999999975322 1         348999999999875

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.49  E-value=1.3e-14  Score=139.87  Aligned_cols=109  Identities=17%  Similarity=0.236  Sum_probs=92.4

Q ss_pred             cCcccccccccCCCeeEEEEEeCCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCc--CCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAI--HKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~--H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ..|+..+.||+|+||.||++...+++.||||++.... .....+.|.+|++++.+++  ||||+++++++..++..++||
T Consensus        56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~  135 (390)
T 2zmd_A           56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM  135 (390)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence            4588899999999999999999779999999996332 3334678999999999996  599999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      | +.+|+|.+++......         .+++.||+|||+.+|
T Consensus       136 E-~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~i  176 (390)
T 2zmd_A          136 E-CGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGI  176 (390)
T ss_dssp             E-CCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             e-cCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9 5688999999765433         348999999999886

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.49  E-value=2e-14  Score=132.55  Aligned_cols=109  Identities=29%  Similarity=0.418  Sum_probs=88.0

Q ss_pred             HhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ..+.|+..+.||+|+||.||+|+..  ..||||++.... .....+.|.+|++++.+++||||+++++++. .+..++||
T Consensus        22 ~~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv~   98 (289)
T 3og7_A           22 PDGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST-APQLAIVT   98 (289)
T ss_dssp             CTTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEE
T ss_pred             CccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeecc-CCccEEEE
Confidence            3556888899999999999999863  359999996432 2334678999999999999999999999764 45689999


Q ss_pred             ecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.++++.....          .+++.||+|||+.+|
T Consensus        99 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~i  141 (289)
T 3og7_A           99 QWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSI  141 (289)
T ss_dssp             ECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999999999999644321          348899999999875

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.48  E-value=1.8e-14  Score=134.15  Aligned_cols=116  Identities=24%  Similarity=0.370  Sum_probs=88.3

Q ss_pred             HHHHHhcCcccccccccCCCeeEEEEEeC----CCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeC
Q 016905          265 ELQLATDNFSESNIIGQGGFGKVYKGVLS----DNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTT  339 (380)
Q Consensus       265 ~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~----~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~  339 (380)
                      ++....++|...+.||+|+||.||+|...    ++..||||++.... .....+.|.+|+.++.+++||||+++++++..
T Consensus        28 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~  107 (313)
T 3brb_A           28 DVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIE  107 (313)
T ss_dssp             TTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC
T ss_pred             hcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEee
Confidence            33445677888999999999999999872    34589999996432 23345779999999999999999999999987


Q ss_pred             CCc-----eeEEeecccCCChhhhccccc------c---------cceeeeeecceeeecC
Q 016905          340 SSE-----RILVYPFMQNLSVAYRLRVSH------K---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       340 ~~~-----~~lV~Ey~~~GsL~~~L~~~~------~---------~~~~~~aL~yLH~~~i  380 (380)
                      .+.     .++||||+++|+|.+++....      .         ..+++.||+|||+.+|
T Consensus       108 ~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i  168 (313)
T 3brb_A          108 MSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNF  168 (313)
T ss_dssp             -------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            543     499999999999999984221      1         1348899999999875

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.48  E-value=1.2e-14  Score=139.07  Aligned_cols=110  Identities=24%  Similarity=0.379  Sum_probs=84.9

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCC------
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS------  341 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~------  341 (380)
                      .+.|+..+.||+|+||.||+|.. .+|+.||||++.... .....+.+.+|++++..++||||+++++++...+      
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  103 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT  103 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence            46788899999999999999998 679999999995432 2234577899999999999999999999997653      


Q ss_pred             ceeEEeecccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          342 ERILVYPFMQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       342 ~~~lV~Ey~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      ..++||||| +++|.++++....        ..+++.||+|||+.||
T Consensus       104 ~~~lv~e~~-~~~L~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~~i  149 (367)
T 1cm8_A          104 DFYLVMPFM-GTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGI  149 (367)
T ss_dssp             CCEEEEECC-SEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             eEEEEEecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            459999999 7899999875322        2359999999999875

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.48  E-value=2e-15  Score=142.40  Aligned_cols=110  Identities=17%  Similarity=0.208  Sum_probs=84.9

Q ss_pred             hcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccC-------CCchHHHHHHHHHHHhcCc---------CCCCccc
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYY-------SPGGEAAFQREVHLISVAI---------HKNLLQL  333 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~-------~~~~~~~f~~e~~~l~~l~---------H~Niv~l  333 (380)
                      .++|+..+.||+|+||.||+|+. +|+.||||++....       .....+.+.+|++++.+++         |||||++
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l   97 (336)
T 2vuw_A           19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL   97 (336)
T ss_dssp             HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred             cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence            35677789999999999999998 78999999996432       2233578999999999886         7777766


Q ss_pred             eeee-----------------eC-------------CCceeEEeecccCCChhhhcccccc--------cceeeeeecce
Q 016905          334 IGYC-----------------TT-------------SSERILVYPFMQNLSVAYRLRVSHK--------IYTKIISLSSL  375 (380)
Q Consensus       334 ~g~~-----------------~~-------------~~~~~lV~Ey~~~GsL~~~L~~~~~--------~~~~~~aL~yL  375 (380)
                      .+.+                 ..             .+..++||||+++|++.+.+.+...        ..+++.||+||
T Consensus        98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~~~~~~~~~~i~~qi~~aL~~l  177 (336)
T 2vuw_A           98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVA  177 (336)
T ss_dssp             EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            6653                 22             6789999999999987777644221        24599999999


Q ss_pred             e-eecC
Q 016905          376 H-CFSL  380 (380)
Q Consensus       376 H-~~~i  380 (380)
                      | +++|
T Consensus       178 H~~~~i  183 (336)
T 2vuw_A          178 EASLRF  183 (336)
T ss_dssp             HHHHCC
T ss_pred             HHhCCE
Confidence            9 8775

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.48  E-value=1.9e-14  Score=136.40  Aligned_cols=111  Identities=23%  Similarity=0.362  Sum_probs=86.5

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCC----chHHHHHHHHHHHhcCcCCCCccceeeeeCCCce
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSP----GGEAAFQREVHLISVAIHKNLLQLIGYCTTSSER  343 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~  343 (380)
                      ..++|+..+.||+|+||.||+|.. .+|+.||||++......    ...+.+.+|++++.+++||||+++++++...+..
T Consensus         8 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   87 (346)
T 1ua2_A            8 RAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNI   87 (346)
T ss_dssp             -----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCC
T ss_pred             HhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCce
Confidence            456788899999999999999998 46899999999632211    1235788999999999999999999999999999


Q ss_pred             eEEeecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      ++||||+++ +|.+++......          .+++.||+|||+.+|
T Consensus        88 ~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  133 (346)
T 1ua2_A           88 SLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWI  133 (346)
T ss_dssp             EEEEECCSE-EHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEEcCCC-CHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            999999985 899888754321          348899999999875

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.48  E-value=7.4e-15  Score=151.70  Aligned_cols=111  Identities=17%  Similarity=0.304  Sum_probs=89.7

Q ss_pred             hcCcccccccccCCCeeEEEEEeC--CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCc-----
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLS--DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSE-----  342 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~--~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~-----  342 (380)
                      .++|+..+.||+|+||.||+|...  +|+.||||++.........+.|.+|++++.+++|||||++++++...+.     
T Consensus        79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~  158 (681)
T 2pzi_A           79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV  158 (681)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred             CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence            367888999999999999999984  6899999998654344456789999999999999999999999987655     


Q ss_pred             eeEEeecccCCChhhhcccccc-------cceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHK-------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~-------~~~~~~aL~yLH~~~i  380 (380)
                      .++||||+++|+|.+++...-.       ..+++.||+|||++||
T Consensus       159 ~~lv~E~~~g~~L~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi  203 (681)
T 2pzi_A          159 GYIVMEYVGGQSLKRSKGQKLPVAEAIAYLLEILPALSYLHSIGL  203 (681)
T ss_dssp             EEEEEECCCCEECC----CCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             eEEEEEeCCCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence            6999999999999998865211       2448999999999875

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.48  E-value=9.6e-15  Score=133.78  Aligned_cols=106  Identities=21%  Similarity=0.328  Sum_probs=87.8

Q ss_pred             hcCcccccccccCCCeeEEEEEeC-CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeC---------
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT---------  339 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~---------  339 (380)
                      ..+|+..+.||+|+||.||+|... +++.||+|++...     .+.+.+|++++.+++||||+++++++..         
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   84 (284)
T 2a19_B           10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYN-----NEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSS   84 (284)
T ss_dssp             HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECC-----SGGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-----
T ss_pred             ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEeccc-----cHHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccc
Confidence            346888999999999999999984 7999999999532     2457899999999999999999998854         


Q ss_pred             -------CCceeEEeecccCCChhhhcccccc--c---------ceeeeeecceeeecC
Q 016905          340 -------SSERILVYPFMQNLSVAYRLRVSHK--I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       340 -------~~~~~lV~Ey~~~GsL~~~L~~~~~--~---------~~~~~aL~yLH~~~i  380 (380)
                             .+..++||||+++|+|.++++....  .         .+++.||.|||+.+|
T Consensus        85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i  143 (284)
T 2a19_B           85 KNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKL  143 (284)
T ss_dssp             ----CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             ccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence                   3447899999999999999965421  1         348899999998875

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.48  E-value=2.1e-14  Score=147.48  Aligned_cols=112  Identities=21%  Similarity=0.276  Sum_probs=92.5

Q ss_pred             HHhcCcccccccccCCCeeEEEEEeC----CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCce
Q 016905          268 LATDNFSESNIIGQGGFGKVYKGVLS----DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSER  343 (380)
Q Consensus       268 ~~~~~~~~~~~lg~G~~g~Vy~~~~~----~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~  343 (380)
                      ...++|+..+.||+|+||.||+|.+.    .+..||||++.........+.|.+|+.++.+++||||++++|++. ++..
T Consensus       387 i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~  465 (656)
T 2j0j_A          387 IQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPV  465 (656)
T ss_dssp             CCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSC
T ss_pred             cccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCce
Confidence            34567888899999999999999973    246899999865444445678999999999999999999999985 4568


Q ss_pred             eEEeecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      ++||||+++|+|.++++....          ..+++.||+|||+.+|
T Consensus       466 ~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~gi  512 (656)
T 2j0j_A          466 WIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRF  512 (656)
T ss_dssp             EEEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999999999999999975432          1348999999999876

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.48  E-value=1.7e-14  Score=136.67  Aligned_cols=110  Identities=18%  Similarity=0.353  Sum_probs=91.3

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCC-----Cce
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS-----SER  343 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~-----~~~  343 (380)
                      .++|+..+.||+|+||.||+|.. .+|+.||||++...........+.+|++++.+++||||+++++++...     ...
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   89 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV   89 (353)
T ss_dssp             CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred             ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence            46788899999999999999998 568999999996443344467789999999999999999999998754     678


Q ss_pred             eEEeecccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      ++||||++ |+|.+++.....        ..+++.||+|||+.||
T Consensus        90 ~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i  133 (353)
T 2b9h_A           90 YIIQELMQ-TDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSNV  133 (353)
T ss_dssp             EEEECCCS-EEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEEEeccC-ccHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            99999997 699998875322        2348999999999875

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.48  E-value=1.3e-14  Score=132.80  Aligned_cols=107  Identities=25%  Similarity=0.327  Sum_probs=89.1

Q ss_pred             hcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCC-CceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS-SERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~-~~~~lV~E  348 (380)
                      .++|+..+.||+|+||.||++.. +|+.||||++...   ...+.|.+|++++.+++||||+++++++... +..++|||
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e   95 (278)
T 1byg_A           20 MKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND---ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTE   95 (278)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCC---C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEEC
T ss_pred             hhhceEEeEEecCCCceEEEEEE-cCCEEEEEEecch---hHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEe
Confidence            46788899999999999999998 5889999998542   2467899999999999999999999997654 46899999


Q ss_pred             cccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.+++.....           ..+++.||+|||+.+|
T Consensus        96 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  138 (278)
T 1byg_A           96 YMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNF  138 (278)
T ss_dssp             CCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9999999999975432           1348899999999875

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.48  E-value=2.4e-14  Score=132.40  Aligned_cols=102  Identities=25%  Similarity=0.382  Sum_probs=83.4

Q ss_pred             hcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhc--CcCCCCccceeeeeC----CCce
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISV--AIHKNLLQLIGYCTT----SSER  343 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~--l~H~Niv~l~g~~~~----~~~~  343 (380)
                      .++|+..+.||+|+||.||+|+. +++.||||++..    ...+.+..|.+++..  ++||||+++++++..    .+..
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~----~~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~   81 (301)
T 3q4u_A            7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSS----RDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQL   81 (301)
T ss_dssp             GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECG----GGHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEE
T ss_pred             cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEecc----ccchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCcee
Confidence            45788899999999999999998 789999999853    235566777777766  799999999998754    2457


Q ss_pred             eEEeecccCCChhhhcccccc--------cceeeeeeccee
Q 016905          344 ILVYPFMQNLSVAYRLRVSHK--------IYTKIISLSSLH  376 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~--------~~~~~~aL~yLH  376 (380)
                      ++||||+++|+|.++++....        ..+++.||+|||
T Consensus        82 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH  122 (301)
T 3q4u_A           82 WLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLH  122 (301)
T ss_dssp             EEEECCCTTCBHHHHHTTCCBCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEehhhccCCCHHHHHhhcccCHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999975432        134899999999

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.47  E-value=2.7e-14  Score=133.99  Aligned_cols=106  Identities=20%  Similarity=0.374  Sum_probs=90.5

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCc-CCCCccceeeeeC--CCceeEE
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI-HKNLLQLIGYCTT--SSERILV  346 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~-H~Niv~l~g~~~~--~~~~~lV  346 (380)
                      ++|+..+.||+|+||.||+|.. .+++.||||++..    ...+.+.+|++++.+++ ||||+++++++..  ....++|
T Consensus        36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~----~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv  111 (330)
T 3nsz_A           36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP----VKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV  111 (330)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS----CCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEE
T ss_pred             CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecc----cchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEE
Confidence            5688899999999999999987 6789999999853    23578999999999997 9999999999987  5668999


Q ss_pred             eecccCCChhhhcccccc------cceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHK------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~------~~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.++++....      ..+++.||+|||+.||
T Consensus       112 ~e~~~~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  151 (330)
T 3nsz_A          112 FEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGI  151 (330)
T ss_dssp             EECCCCCCHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EeccCchhHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            999999999999864221      2458999999999875

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.47  E-value=2.5e-14  Score=137.70  Aligned_cols=111  Identities=22%  Similarity=0.396  Sum_probs=83.6

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCc-CCCCccceeeeeCCC--ce
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAI-HKNLLQLIGYCTTSS--ER  343 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~-H~Niv~l~g~~~~~~--~~  343 (380)
                      ..++|+..+.||+|+||.||+|.. .+|+.||||++.... .....+.+.+|+.++.++. ||||+++++++...+  ..
T Consensus         7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~   86 (388)
T 3oz6_A            7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV   86 (388)
T ss_dssp             HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred             ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence            456789999999999999999998 678999999996432 2334667889999999997 999999999997544  68


Q ss_pred             eEEeecccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      ++|||||+ |+|.++++....        ..+++.||+|||+.||
T Consensus        87 ~lv~e~~~-~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~i  130 (388)
T 3oz6_A           87 YLVFDYME-TDLHAVIRANILEPVHKQYVVYQLIKVIKYLHSGGL  130 (388)
T ss_dssp             EEEEECCS-EEHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEEecccC-cCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            99999998 699999875322        2358999999999875

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.47  E-value=9.3e-14  Score=128.51  Aligned_cols=85  Identities=26%  Similarity=0.283  Sum_probs=51.4

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.++ .+|..+.++++|++|+|++|+|++..|..|..+++|+.|+|++|++++..|..|..+++|+.|+|+
T Consensus        78 ~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  156 (290)
T 1p9a_G           78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA  156 (290)
T ss_dssp             TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence            5566666666665 455556666666666666666665555556666666666666666664444455566666666666


Q ss_pred             CCcccc
Q 016905          157 SNNLTG  162 (380)
Q Consensus       157 ~N~l~g  162 (380)
                      +|+|++
T Consensus       157 ~N~l~~  162 (290)
T 1p9a_G          157 NNNLTE  162 (290)
T ss_dssp             TSCCSC
T ss_pred             CCcCCc
Confidence            666653

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.47  E-value=1.7e-14  Score=148.53  Aligned_cols=112  Identities=19%  Similarity=0.211  Sum_probs=94.4

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCcee
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~  344 (380)
                      ..++|+..++||+|+||.||+|.. .+++.||||++....  .....+.+..|.+++..+ +||||+++++++...+..+
T Consensus       339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~  418 (674)
T 3pfq_A          339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY  418 (674)
T ss_dssp             -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred             cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence            456899999999999999999998 568899999996321  223456788999999987 7999999999999999999


Q ss_pred             EEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +||||+++|+|.++++.....         .+++.||+|||+.+|
T Consensus       419 lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~gI  463 (674)
T 3pfq_A          419 FVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSKGI  463 (674)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred             EEEeCcCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            999999999999999865433         348999999999875

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.47  E-value=8.9e-14  Score=123.31  Aligned_cols=110  Identities=16%  Similarity=0.245  Sum_probs=101.8

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++..+..|.++++|++|+|++|+|++..|..|+.+++|++|+|++|++++..|..|..+++|+.|+|+
T Consensus        58 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  137 (220)
T 2v70_A           58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY  137 (220)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred             CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence            89999999999999888899999999999999999998888889999999999999999999999999999999999999


Q ss_pred             CCcccccCcccccc---ccccccCCCccccCCC
Q 016905          157 SNNLTGRIPMQLFS---VATFNFTGTHLICGSS  186 (380)
Q Consensus       157 ~N~l~g~~p~~~~~---~~~~~~~gN~~lc~~~  186 (380)
                      +|++++..|..+..   +..+++.+|++.|.+.
T Consensus       138 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          138 DNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            99999988877654   5678899999988653

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.47  E-value=2.2e-14  Score=134.85  Aligned_cols=113  Identities=17%  Similarity=0.163  Sum_probs=92.2

Q ss_pred             HHhcCcccc-cccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCce
Q 016905          268 LATDNFSES-NIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSER  343 (380)
Q Consensus       268 ~~~~~~~~~-~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~  343 (380)
                      .-.+.|... +.||+|+||.||+|.. .+++.||||++.... .......+.+|+.++.++ +||||+++++++...+..
T Consensus        25 ~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~  104 (327)
T 3lm5_A           25 NFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEI  104 (327)
T ss_dssp             HHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEE
T ss_pred             hhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeE
Confidence            334455555 7899999999999998 468999999996432 233467899999999999 569999999999999999


Q ss_pred             eEEeecccCCChhhhccccc--c---------cceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSH--K---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~--~---------~~~~~~aL~yLH~~~i  380 (380)
                      ++||||+++|+|.+++....  .         ..+++.||+|||+.||
T Consensus       105 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~gi  152 (327)
T 3lm5_A          105 ILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNNI  152 (327)
T ss_dssp             EEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            99999999999999986431  1         1348999999998875

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.46  E-value=2.8e-14  Score=136.17  Aligned_cols=110  Identities=17%  Similarity=0.316  Sum_probs=91.3

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCC-----Cce
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS-----SER  343 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~-----~~~  343 (380)
                      ..+|+..+.||+|+||.||+|.. .+++.||||++.........+.+.+|++++.+++||||+++++++...     ...
T Consensus        26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~  105 (364)
T 3qyz_A           26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV  105 (364)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence            45788899999999999999998 568899999996543344457899999999999999999999998754     358


Q ss_pred             eEEeecccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      ++||||++ |+|.+++.....        ..+++.||+|||+.||
T Consensus       106 ~iv~e~~~-~~L~~~l~~~~~~~~~~~~i~~qi~~aL~~LH~~~i  149 (364)
T 3qyz_A          106 YIVQDLME-TDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANV  149 (364)
T ss_dssp             EEEEECCS-EEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEEEcccC-cCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            99999997 599999875422        2458999999999875

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.46  E-value=1e-13  Score=135.77  Aligned_cols=108  Identities=22%  Similarity=0.244  Sum_probs=58.4

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++..|..|+++++|++|+|++|.+++..|..++++++|++|+|++|++++..|..|..+++|+.|||+
T Consensus       300 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  379 (455)
T 3v47_A          300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD  379 (455)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECC
Confidence            45555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCcccccCcccc---ccccccccCCCccccC
Q 016905          157 SNNLTGRIPMQL---FSVATFNFTGTHLICG  184 (380)
Q Consensus       157 ~N~l~g~~p~~~---~~~~~~~~~gN~~lc~  184 (380)
                      +|++++..+..+   .++..+++.+|+..|.
T Consensus       380 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          380 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCccccCCHhHhccCCcccEEEccCCCcccC
Confidence            555554333222   2334455555555544

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.46  E-value=1.1e-14  Score=135.93  Aligned_cols=114  Identities=20%  Similarity=0.378  Sum_probs=94.0

Q ss_pred             HHHHHhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCce
Q 016905          265 ELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSER  343 (380)
Q Consensus       265 ~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~  343 (380)
                      +.....++|+..+.||+|+||.||+|....  .+|+|.+.... .....+.|.+|+.++.+++||||+++++++...+..
T Consensus        27 ~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  104 (319)
T 2y4i_B           27 EWDIPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHL  104 (319)
T ss_dssp             GSSSCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCE
T ss_pred             cccCCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCce
Confidence            333456778889999999999999999743  49999986322 233456788999999999999999999999999999


Q ss_pred             eEEeecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      ++||||+++|+|.++++.....          .+++.||+|||+.+|
T Consensus       105 ~iv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i  151 (319)
T 2y4i_B          105 AIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGI  151 (319)
T ss_dssp             EEECBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEeecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9999999999999999865421          348999999999875

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.46  E-value=2.6e-14  Score=137.37  Aligned_cols=108  Identities=19%  Similarity=0.344  Sum_probs=83.6

Q ss_pred             HHHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCC-----
Q 016905          267 QLATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS-----  340 (380)
Q Consensus       267 ~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~-----  340 (380)
                      +...++|+..+.||+|+||.||+|.. .+|+.||||++....     +.+.+|++++..++|||||++++++...     
T Consensus         3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~-----~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~   77 (383)
T 3eb0_A            3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDP-----RYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEP   77 (383)
T ss_dssp             ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCT-----TSCCHHHHHHTTCCCTTBCCEEEEEEEC-----
T ss_pred             ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCc-----chHHHHHHHHHHcCCCCccchhheeeecCcccc
Confidence            34567899999999999999999998 679999999985432     1234799999999999999999998442     


Q ss_pred             ---------------------------------CceeEEeecccCCChhhhccc----ccc---------cceeeeeecc
Q 016905          341 ---------------------------------SERILVYPFMQNLSVAYRLRV----SHK---------IYTKIISLSS  374 (380)
Q Consensus       341 ---------------------------------~~~~lV~Ey~~~GsL~~~L~~----~~~---------~~~~~~aL~y  374 (380)
                                                       ...++||||++ |+|.+.++.    ...         ..+++.||+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~  156 (383)
T 3eb0_A           78 KPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGF  156 (383)
T ss_dssp             --------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence                                             23789999998 588877753    111         2358999999


Q ss_pred             eeeecC
Q 016905          375 LHCFSL  380 (380)
Q Consensus       375 LH~~~i  380 (380)
                      ||+.||
T Consensus       157 LH~~gi  162 (383)
T 3eb0_A          157 IHSLGI  162 (383)
T ss_dssp             HHTTTE
T ss_pred             HHHCcC
Confidence            999875

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.45  E-value=2.9e-14  Score=140.60  Aligned_cols=110  Identities=21%  Similarity=0.336  Sum_probs=88.8

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCC------C
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS------S  341 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~------~  341 (380)
                      .++|+..+.||+|+||.||+|.. .+++.||||++.... .....+.+.+|+.++..++|||||++++++...      .
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  140 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ  140 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence            46788899999999999999997 568999999996432 233467789999999999999999999999654      3


Q ss_pred             ceeEEeecccCCChhhhccccc-------ccceeeeeecceeeecC
Q 016905          342 ERILVYPFMQNLSVAYRLRVSH-------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       342 ~~~lV~Ey~~~GsL~~~L~~~~-------~~~~~~~aL~yLH~~~i  380 (380)
                      ..++|||||++ +|.+.++..-       ...+++.||+|||++||
T Consensus       141 ~~~lv~E~~~~-~l~~~~~~~l~~~~~~~~~~qil~aL~~lH~~~i  185 (464)
T 3ttj_A          141 DVYLVMELMDA-NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGI  185 (464)
T ss_dssp             EEEEEEECCSE-EHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eEEEEEeCCCC-CHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            46999999986 4666665321       23459999999999886

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.45  E-value=4.5e-14  Score=130.82  Aligned_cols=110  Identities=24%  Similarity=0.332  Sum_probs=87.0

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC---CCchHHHHHHHHHHHhcCcCCCCccceeeee--CCCce
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY---SPGGEAAFQREVHLISVAIHKNLLQLIGYCT--TSSER  343 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~---~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~--~~~~~  343 (380)
                      .++|+..+.||+|+||.||++.. .+++.||+|++....   .....+.+.+|++++.+++||||+++++++.  ..+..
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM   83 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred             ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence            46788899999999999999998 568899999996321   1234678999999999999999999999984  44578


Q ss_pred             eEEeecccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      ++||||+++| |.+++.....           ..+++.||+|||+.+|
T Consensus        84 ~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i  130 (305)
T 2wtk_C           84 YMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQGI  130 (305)
T ss_dssp             EEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999999876 7777654221           1348999999999874

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.45  E-value=4.1e-14  Score=134.13  Aligned_cols=110  Identities=25%  Similarity=0.373  Sum_probs=88.6

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeC--------
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTT--------  339 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~--------  339 (380)
                      .++|+..+.||+|+||.||+|.. .+|+.||||++.... .......+.+|++++.+++||||+++++++..        
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   95 (351)
T 3mi9_A           16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   95 (351)
T ss_dssp             GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred             ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence            35688899999999999999998 678999999986332 23345678899999999999999999999876        


Q ss_pred             CCceeEEeecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          340 SSERILVYPFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       340 ~~~~~lV~Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      .+..++||||+++ +|.+.+.....          ..+++.||+|||+.||
T Consensus        96 ~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i  145 (351)
T 3mi9_A           96 KGSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKI  145 (351)
T ss_dssp             -CEEEEEEECCSE-EHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             CceEEEEEeccCC-CHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            3458999999985 77777764322          2348999999999875

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.45  E-value=1e-14  Score=148.70  Aligned_cols=110  Identities=17%  Similarity=0.242  Sum_probs=91.5

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeC------CCce
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT------SSER  343 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~------~~~~  343 (380)
                      ++|+..+.||+|+||.||+|.. .+|+.||||++.........+.|.+|++++.+++||||+++++++..      .+..
T Consensus        14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~   93 (676)
T 3qa8_A           14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLP   93 (676)
T ss_dssp             ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSC
T ss_pred             CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeE
Confidence            6788899999999999999998 56899999998754444556789999999999999999999998765      5678


Q ss_pred             eEEeecccCCChhhhcccccc---c---------ceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHK---I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~---~---------~~~~~aL~yLH~~~i  380 (380)
                      ++||||+++|+|.+++.....   .         .+++.||+|||+.||
T Consensus        94 ~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~gI  142 (676)
T 3qa8_A           94 LLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENRI  142 (676)
T ss_dssp             CCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHTTB
T ss_pred             EEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence            999999999999999976432   1         338899999999875

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.45  E-value=2.2e-13  Score=124.44  Aligned_cols=89  Identities=27%  Similarity=0.318  Sum_probs=50.4

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++..+..|.++++|++|+|++|++++..|..|+.+++|++|+|++|++++..+..|..+++|+.|+|+
T Consensus        86 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  165 (270)
T 2o6q_A           86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY  165 (270)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence            45666666666665444455556666666666666655555555555666666666665554333445555555555555


Q ss_pred             CCcccccCc
Q 016905          157 SNNLTGRIP  165 (380)
Q Consensus       157 ~N~l~g~~p  165 (380)
                      +|++++..|
T Consensus       166 ~n~l~~~~~  174 (270)
T 2o6q_A          166 NNQLKRVPE  174 (270)
T ss_dssp             SSCCSCCCT
T ss_pred             CCcCcEeCh
Confidence            555554333

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.45  E-value=6.3e-14  Score=116.14  Aligned_cols=84  Identities=26%  Similarity=0.383  Sum_probs=49.1

Q ss_pred             CEEEEEeCCCCCc-cccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEEC
Q 016905           77 NVISLTLGSNGFS-GKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~l~-g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~l  155 (380)
                      +++.|+|++|.++ |.+|..+..+++|+.|+|++|.+++.  ..++.+++|++|+|++|++++.+|..+..+++|+.|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            4555666666665 55555555566666666666665544  44555666666666666666555555555566666666


Q ss_pred             cCCcccc
Q 016905          156 SSNNLTG  162 (380)
Q Consensus       156 s~N~l~g  162 (380)
                      ++|++++
T Consensus        96 s~N~i~~  102 (149)
T 2je0_A           96 SGNKIKD  102 (149)
T ss_dssp             TTSCCCS
T ss_pred             CCCcCCC
Confidence            6666554

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.45  E-value=4e-14  Score=135.40  Aligned_cols=110  Identities=22%  Similarity=0.353  Sum_probs=82.9

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCC------C
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS------S  341 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~------~  341 (380)
                      .++|+..+.||+|+||.||+|.. .+|+.||||++.... .....+.+.+|++++..++||||+++++++...      .
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~  107 (367)
T 2fst_X           28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN  107 (367)
T ss_dssp             ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred             CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence            46788899999999999999997 678999999996432 233467789999999999999999999998754      5


Q ss_pred             ceeEEeecccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          342 ERILVYPFMQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       342 ~~~lV~Ey~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      ..++|+||+ +++|.++++....        ..+++.||+|||+.||
T Consensus       108 ~~~lv~e~~-~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~gi  153 (367)
T 2fst_X          108 DVYLVTHLM-GADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADI  153 (367)
T ss_dssp             CCEEEEECC-CEECC-----CCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eEEEEeccc-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            579999999 6899999875322        2359999999999876

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.45  E-value=6.8e-15  Score=141.13  Aligned_cols=110  Identities=15%  Similarity=0.140  Sum_probs=86.7

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc--CCCchHHHHHHHH---HHHhcCcCCCCccce-------ee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY--YSPGGEAAFQREV---HLISVAIHKNLLQLI-------GY  336 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~--~~~~~~~~f~~e~---~~l~~l~H~Niv~l~-------g~  336 (380)
                      .++|+..+.||+|+||.||+|+. .+|+.||||++...  ......+.|.+|+   +.+++++|||||+++       ++
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~  151 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  151 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence            46688889999999999999997 67999999999632  2334567899999   566667899999998       55


Q ss_pred             eeCCC-----------------ceeEEeecccCCChhhhccccc----------------ccceeeeeecceeeecC
Q 016905          337 CTTSS-----------------ERILVYPFMQNLSVAYRLRVSH----------------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       337 ~~~~~-----------------~~~lV~Ey~~~GsL~~~L~~~~----------------~~~~~~~aL~yLH~~~i  380 (380)
                      +..++                 ..++||||+ +|+|.++++...                ...+++.||+|||+.||
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i  227 (377)
T 3byv_A          152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGL  227 (377)
T ss_dssp             EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCCe
Confidence            54443                 278999999 689999997421                22459999999999875

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.44  E-value=5.1e-14  Score=134.77  Aligned_cols=110  Identities=20%  Similarity=0.320  Sum_probs=89.8

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCC------
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS------  341 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~------  341 (380)
                      .++|+..+.||+|+||.||+|.. .+++.||||++.... .....+.+.+|+.++..++||||+++++++...+      
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~  103 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ  103 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred             hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence            45788899999999999999997 568999999996432 2334567899999999999999999999997654      


Q ss_pred             ceeEEeecccCCChhhhccccc-------ccceeeeeecceeeecC
Q 016905          342 ERILVYPFMQNLSVAYRLRVSH-------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       342 ~~~lV~Ey~~~GsL~~~L~~~~-------~~~~~~~aL~yLH~~~i  380 (380)
                      ..++||||++ |+|.+++...-       ...+++.||+|||+.||
T Consensus       104 ~~~lv~e~~~-~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i  148 (371)
T 2xrw_A          104 DVYIVMELMD-ANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGI  148 (371)
T ss_dssp             EEEEEEECCS-EEHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ceEEEEEcCC-CCHHHHHhhccCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            6799999997 57888876321       12458999999999876

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.44  E-value=7.5e-14  Score=145.02  Aligned_cols=101  Identities=28%  Similarity=0.402  Sum_probs=78.7

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      .|+.|+|++|.+. .+|..+.++++|++|+|++|.|+ .+|..|++|++|++|||++|+|+ .||..|+.|++|+.|+|+
T Consensus       225 ~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~  301 (727)
T 4b8c_D          225 LWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFF  301 (727)
T ss_dssp             CCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECC
T ss_pred             CCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECC
Confidence            4667888888887 77777778888888888888888 78888888888888888888888 778888888888888888


Q ss_pred             CCcccccCcccccc---ccccccCCCcc
Q 016905          157 SNNLTGRIPMQLFS---VATFNFTGTHL  181 (380)
Q Consensus       157 ~N~l~g~~p~~~~~---~~~~~~~gN~~  181 (380)
                      +|.|+ .+|..+..   +..+++.+|+.
T Consensus       302 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          302 DNMVT-TLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             SSCCC-CCCSSTTSCTTCCCEECTTSCC
T ss_pred             CCCCC-ccChhhhcCCCccEEeCCCCcc
Confidence            88886 77766554   34556666654

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.44  E-value=3.5e-14  Score=130.58  Aligned_cols=110  Identities=25%  Similarity=0.307  Sum_probs=82.9

Q ss_pred             hcCcccccccccCCCeeEEEEEe--CCCc--EEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCce
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL--SDNT--KVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSER  343 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~--~~g~--~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~  343 (380)
                      .++|+..+.||+|+||.||+|.+  .+++  .||||++....  .....+.|.+|++++.+++||||+++++++..++ .
T Consensus        17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~   95 (291)
T 1u46_A           17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-M   95 (291)
T ss_dssp             GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-C
T ss_pred             hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-c
Confidence            35688889999999999999986  2333  68999986432  2335678999999999999999999999998754 8


Q ss_pred             eEEeecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      ++||||+++|+|.+++.....          ..+++.||+|||+.+|
T Consensus        96 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  142 (291)
T 1u46_A           96 KMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRF  142 (291)
T ss_dssp             EEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             eeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            899999999999999975422          1348999999998874

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.44  E-value=5.9e-14  Score=133.18  Aligned_cols=110  Identities=25%  Similarity=0.394  Sum_probs=89.8

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCc-----
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSE-----  342 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~-----  342 (380)
                      .++|...+.||+|+||.||+|.. .+|+.||||++.... .....+.+.+|+.++.+++||||+++++++...+.     
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~  102 (353)
T 3coi_A           23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  102 (353)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred             CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence            35688889999999999999998 568999999996432 22335778999999999999999999999987654     


Q ss_pred             -eeEEeecccCCChhhhcccccc-------cceeeeeecceeeecC
Q 016905          343 -RILVYPFMQNLSVAYRLRVSHK-------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       343 -~~lV~Ey~~~GsL~~~L~~~~~-------~~~~~~aL~yLH~~~i  380 (380)
                       .++||||++ |+|.+++...-.       ..+++.||+|||+.||
T Consensus       103 ~~~lv~e~~~-~~l~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~i  147 (353)
T 3coi_A          103 DFYLVMPFMQ-TDLQKIMGLKFSEEKIQYLVYQMLKGLKYIHSAGV  147 (353)
T ss_dssp             CCEEEEECCS-EEGGGTTTSCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eEEEEecccc-CCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence             499999997 699998864311       2458999999999875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.44  E-value=7.8e-14  Score=139.98  Aligned_cols=115  Identities=23%  Similarity=0.256  Sum_probs=96.4

Q ss_pred             CCCCceeeEecCC-------------CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeee
Q 016905           64 PCFSWSHVTCRNG-------------NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLN  130 (380)
Q Consensus        64 ~c~~w~gv~c~~~-------------~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~  130 (380)
                      .| .|.|+ |+..             +++.|+|++|.+++..|..|.++++|++|+|++|++++..|..|+++++|++||
T Consensus         3 ~C-~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   80 (549)
T 2z81_A            3 SC-DASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD   80 (549)
T ss_dssp             EE-CTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             cC-CCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence            46 88887 7632             799999999999999899999999999999999999998889999999999999


Q ss_pred             ccCccccccCCccccCCCCCCEEECcCCcccc-cCcccccc---ccccccCCCc
Q 016905          131 LANNKFSGSIPATWSQLSNLKHLDLSSNNLTG-RIPMQLFS---VATFNFTGTH  180 (380)
Q Consensus       131 Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g-~~p~~~~~---~~~~~~~gN~  180 (380)
                      |++|++++..|..|+++++|++||+++|++++ .+|..+..   +..+++.+|.
T Consensus        81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~  134 (549)
T 2z81_A           81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE  134 (549)
T ss_dssp             CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCc
Confidence            99999998877789999999999999999986 45555443   3445555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.44  E-value=1.8e-13  Score=121.26  Aligned_cols=109  Identities=23%  Similarity=0.286  Sum_probs=98.6

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++..|..|.++++|++|+|++|+|+...+..|..+++|+.|+|++|++++..|..|..+++|+.|+|+
T Consensus        57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  136 (220)
T 2v9t_B           57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY  136 (220)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence            79999999999999999999999999999999999996655668999999999999999999999999999999999999


Q ss_pred             CCcccccCccccc---cccccccCCCccccCC
Q 016905          157 SNNLTGRIPMQLF---SVATFNFTGTHLICGS  185 (380)
Q Consensus       157 ~N~l~g~~p~~~~---~~~~~~~~gN~~lc~~  185 (380)
                      +|+|++..|..+.   ++..+.+.+|++.|.+
T Consensus       137 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  168 (220)
T 2v9t_B          137 DNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC  168 (220)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             CCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence            9999987776554   4567889999998853

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.44  E-value=4.5e-14  Score=129.79  Aligned_cols=110  Identities=15%  Similarity=0.154  Sum_probs=85.8

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchH-HHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGE-AAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~-~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      .++|+..+.||+|+||.||++.. .+|+.||||++......... +.+..+...+..++||||+++++++..++..++||
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~   85 (290)
T 3fme_A            6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM   85 (290)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred             HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence            46788899999999999999998 67899999999643333333 33445555688889999999999999999999999


Q ss_pred             ecccCCChhhhcccc----cc---------cceeeeeecceeee-cC
Q 016905          348 PFMQNLSVAYRLRVS----HK---------IYTKIISLSSLHCF-SL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~----~~---------~~~~~~aL~yLH~~-~i  380 (380)
                      ||++ |+|.++++..    ..         ..+++.||+|||+. ||
T Consensus        86 e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i  131 (290)
T 3fme_A           86 ELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSV  131 (290)
T ss_dssp             ECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             ehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCCe
Confidence            9997 5888887531    11         23489999999987 65

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.44  E-value=6.6e-14  Score=130.14  Aligned_cols=111  Identities=26%  Similarity=0.341  Sum_probs=87.0

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC----CCchHHHHHHHHHHHhcCc---CCCCccceeeeeCC
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY----SPGGEAAFQREVHLISVAI---HKNLLQLIGYCTTS  340 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~----~~~~~~~f~~e~~~l~~l~---H~Niv~l~g~~~~~  340 (380)
                      ..++|+..+.||+|+||.||+|.. .+++.||||++....    .......+.+|++++.+++   ||||+++++++...
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~   86 (308)
T 3g33_A            7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS   86 (308)
T ss_dssp             ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred             cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence            467899999999999999999997 678999999986321    1122456778888877775   99999999999765


Q ss_pred             C-----ceeEEeecccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          341 S-----ERILVYPFMQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       341 ~-----~~~lV~Ey~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      .     ..++||||++ |+|.+++.....           ..+++.||+|||+.+|
T Consensus        87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i  141 (308)
T 3g33_A           87 RTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANCI  141 (308)
T ss_dssp             CSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            4     4789999997 699999876543           1348999999999875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.44  E-value=1.4e-13  Score=127.96  Aligned_cols=105  Identities=22%  Similarity=0.348  Sum_probs=69.3

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcc-cCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEEC
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSG-TLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g-~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~l  155 (380)
                      +|+.|+|++|.+++..|..+.++++|++|+|++|.+++ .+|..+..+++|++|+|++|++++..|..|..+++|+.|+|
T Consensus       127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  206 (306)
T 2z66_A          127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM  206 (306)
T ss_dssp             TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence            56677777777776666667777777777777777765 46666777777777777777777666666777777777777


Q ss_pred             cCCcccccCccccc---cccccccCCCcc
Q 016905          156 SSNNLTGRIPMQLF---SVATFNFTGTHL  181 (380)
Q Consensus       156 s~N~l~g~~p~~~~---~~~~~~~~gN~~  181 (380)
                      ++|++++..+..+.   ++..+++.+|..
T Consensus       207 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             TTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred             CCCccCccChhhccCcccCCEeECCCCCC
Confidence            77777655443332   344555555543

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.44  E-value=6e-14  Score=134.24  Aligned_cols=110  Identities=25%  Similarity=0.397  Sum_probs=90.5

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCce----
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSER----  343 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~----  343 (380)
                      .++|...+.||+|+||.||+|.. .+|+.||||++.... .....+.+.+|+.++.+++||||+++++++...+..    
T Consensus        41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~  120 (371)
T 4exu_A           41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  120 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred             cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence            45788889999999999999998 568999999996432 223367889999999999999999999999876654    


Q ss_pred             --eEEeecccCCChhhhcccccc-------cceeeeeecceeeecC
Q 016905          344 --ILVYPFMQNLSVAYRLRVSHK-------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       344 --~lV~Ey~~~GsL~~~L~~~~~-------~~~~~~aL~yLH~~~i  380 (380)
                        ++||||++ |+|.+++...-.       ..+++.||+|||+.||
T Consensus       121 ~~~lv~e~~~-~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i  165 (371)
T 4exu_A          121 DFYLVMPFMQ-TDLQKIMGMEFSEEKIQYLVYQMLKGLKYIHSAGV  165 (371)
T ss_dssp             CCEEEEECCC-EEHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eEEEEEcccc-ccHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence              99999997 689988754311       2358999999999876

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.44  E-value=1.1e-13  Score=135.60  Aligned_cols=117  Identities=22%  Similarity=0.292  Sum_probs=89.1

Q ss_pred             CCCCCcee--eEecCC----------CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCC-hhhhCCcccCee
Q 016905           63 SPCFSWSH--VTCRNG----------NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLP-DFLGSMTHLQSL  129 (380)
Q Consensus        63 ~~c~~w~g--v~c~~~----------~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~l  129 (380)
                      ..| .|.+  +.|++.          +++.|+|++|.+++..|..|+++++|++|+|++|.+.+.+| ..|.++++|++|
T Consensus         6 ~~c-~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L   84 (455)
T 3v47_A            6 SEC-SVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL   84 (455)
T ss_dssp             -CC-EEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEE
T ss_pred             cee-EEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEE
Confidence            455 5555  778754          58889999999988888888888888888888888887664 568888888888


Q ss_pred             eccCccccccCCccccCCCCCCEEECcCCcccccCccc--c---ccccccccCCCc
Q 016905          130 NLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQ--L---FSVATFNFTGTH  180 (380)
Q Consensus       130 ~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~~p~~--~---~~~~~~~~~gN~  180 (380)
                      +|++|++++.+|..|+++++|++|+|++|++++.+|..  +   .++..+++.+|.
T Consensus        85 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~  140 (455)
T 3v47_A           85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN  140 (455)
T ss_dssp             ECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB
T ss_pred             eCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc
Confidence            88888888888888888888888888888888755543  3   334445555554

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.44  E-value=7.7e-14  Score=131.42  Aligned_cols=105  Identities=24%  Similarity=0.325  Sum_probs=88.7

Q ss_pred             HHHhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhc--CcCCCCccceeeeeCCC---
Q 016905          267 QLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISV--AIHKNLLQLIGYCTTSS---  341 (380)
Q Consensus       267 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~--l~H~Niv~l~g~~~~~~---  341 (380)
                      ....++|+..+.||+|+||.||+|+. +++.||||++..    ...+.+.+|.+++..  ++||||+++++++...+   
T Consensus        38 ~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~----~~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~  112 (342)
T 1b6c_B           38 RTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSS----REERSWFREAEIYQTVMLRHENILGFIAADNKDNGTW  112 (342)
T ss_dssp             HHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECG----GGHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSC
T ss_pred             ccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCc----hhHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCcc
Confidence            34556799999999999999999998 689999999853    235678889999887  79999999999998765   


Q ss_pred             -ceeEEeecccCCChhhhcccccc--------cceeeeeeccee
Q 016905          342 -ERILVYPFMQNLSVAYRLRVSHK--------IYTKIISLSSLH  376 (380)
Q Consensus       342 -~~~lV~Ey~~~GsL~~~L~~~~~--------~~~~~~aL~yLH  376 (380)
                       ..++||||+++|+|.++++....        ..+++.||+|||
T Consensus       113 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH  156 (342)
T 1b6c_B          113 TQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLH  156 (342)
T ss_dssp             CCEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeEEEEeecCCCcHHHHHhccCccHHHHHHHHHHHHHHHHHHH
Confidence             78999999999999999975432        234899999999

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.44  E-value=1.4e-13  Score=126.61  Aligned_cols=104  Identities=23%  Similarity=0.241  Sum_probs=67.6

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++..|..+.++++|++|+|++|.+++..+..++.+++|++|+|++|++++..+..|..+++|+.|+++
T Consensus       106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  185 (285)
T 1ozn_A          106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH  185 (285)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECC
Confidence            56777777777776666667777777777777777765555556677777777777777775444556667777777777


Q ss_pred             CCcccccCcccccc---ccccccCCCc
Q 016905          157 SNNLTGRIPMQLFS---VATFNFTGTH  180 (380)
Q Consensus       157 ~N~l~g~~p~~~~~---~~~~~~~gN~  180 (380)
                      +|.+++..|..+..   +..+++.+|.
T Consensus       186 ~n~l~~~~~~~~~~l~~L~~L~l~~n~  212 (285)
T 1ozn_A          186 QNRVAHVHPHAFRDLGRLMTLYLFANN  212 (285)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCcccccCHhHccCcccccEeeCCCCc
Confidence            77776666655433   3444455543

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.44  E-value=3.7e-14  Score=137.26  Aligned_cols=104  Identities=19%  Similarity=0.249  Sum_probs=83.5

Q ss_pred             cCcccc-cccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhc-CcCCCCccceeeeeC----CCce
Q 016905          271 DNFSES-NIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISV-AIHKNLLQLIGYCTT----SSER  343 (380)
Q Consensus       271 ~~~~~~-~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~-l~H~Niv~l~g~~~~----~~~~  343 (380)
                      ++|... ++||+|+||.||++.. .+++.||||++..      ...+.+|++++.+ .+||||+++++++..    .+..
T Consensus        61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~------~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~  134 (400)
T 1nxk_A           61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD------CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL  134 (400)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred             ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc------chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEE
Confidence            455554 6899999999999998 5689999999852      2457788888754 589999999998864    5568


Q ss_pred             eEEeecccCCChhhhcccccc--c---------ceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHK--I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~--~---------~~~~~aL~yLH~~~i  380 (380)
                      ++|||||++|+|.++++....  .         .+++.||+|||+.+|
T Consensus       135 ~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i  182 (400)
T 1nxk_A          135 LIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINI  182 (400)
T ss_dssp             EEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            999999999999999976432  1         348899999998875

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.43  E-value=1.5e-13  Score=125.51  Aligned_cols=104  Identities=25%  Similarity=0.295  Sum_probs=80.0

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      .++.|+|++|.+++..+..|.++++|++|+|++|.++...+..|..+++|++|+|++|++++..|..|..+++|+.|+++
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            57788888888887766778888888888888888885555556788888888888888886666677888888888888


Q ss_pred             CCcccccCcccc---ccccccccCCCc
Q 016905          157 SNNLTGRIPMQL---FSVATFNFTGTH  180 (380)
Q Consensus       157 ~N~l~g~~p~~~---~~~~~~~~~gN~  180 (380)
                      +|++++..|..+   .++..+.+.+|.
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~  144 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYNE  144 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCCc
Confidence            888887666544   344556666664

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.43  E-value=5.8e-14  Score=130.85  Aligned_cols=113  Identities=16%  Similarity=0.229  Sum_probs=94.6

Q ss_pred             HHHhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCc--CCCCccceeeeeCCCce
Q 016905          267 QLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAI--HKNLLQLIGYCTTSSER  343 (380)
Q Consensus       267 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~--H~Niv~l~g~~~~~~~~  343 (380)
                      ....+.|+..+.||+|+||.||++...+++.||||++.... .....+.|.+|++++.+++  ||||+++++++..++..
T Consensus        24 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~  103 (313)
T 3cek_A           24 SVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYI  103 (313)
T ss_dssp             EETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEE
T ss_pred             eeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEE
Confidence            33456788899999999999999999889999999996322 2334678999999999997  59999999999999999


Q ss_pred             eEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ++||| +.+|+|.+++......         .+++.||+|||+.+|
T Consensus       104 ~lv~e-~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i  148 (313)
T 3cek_A          104 YMVME-CGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGI  148 (313)
T ss_dssp             EEEEC-CCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEe-cCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            99999 5688999999765433         348999999999875

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.43  E-value=1.7e-14  Score=134.38  Aligned_cols=115  Identities=17%  Similarity=0.270  Sum_probs=84.7

Q ss_pred             HHHHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCC-----chHHHHHHHHHHHhcC----cCCCCcccee
Q 016905          266 LQLATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSP-----GGEAAFQREVHLISVA----IHKNLLQLIG  335 (380)
Q Consensus       266 l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-----~~~~~f~~e~~~l~~l----~H~Niv~l~g  335 (380)
                      .....++|+..+.||+|+||.||+|.. .+++.||||++......     .....+.+|+.++.++    +||||+++++
T Consensus        26 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~  105 (312)
T 2iwi_A           26 REAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLD  105 (312)
T ss_dssp             -------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEE
T ss_pred             hhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEE
Confidence            344567799999999999999999988 57899999999633211     1234466899999888    8999999999


Q ss_pred             eeeCCCceeEEeec-ccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          336 YCTTSSERILVYPF-MQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       336 ~~~~~~~~~lV~Ey-~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ++...+..++|||| +++|+|.+++......         .+++.||+|||+.+|
T Consensus       106 ~~~~~~~~~~v~e~~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  160 (312)
T 2iwi_A          106 WFETQEGFMLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCHSRGV  160 (312)
T ss_dssp             EC-----CEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHTE
T ss_pred             EEecCCeEEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            99998999999999 8999999999765432         348999999998874

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.42  E-value=6.3e-14  Score=129.85  Aligned_cols=105  Identities=19%  Similarity=0.262  Sum_probs=85.8

Q ss_pred             hcCcccc-cccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHH-hcCcCCCCccceeeeeC----CCc
Q 016905          270 TDNFSES-NIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLI-SVAIHKNLLQLIGYCTT----SSE  342 (380)
Q Consensus       270 ~~~~~~~-~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l-~~l~H~Niv~l~g~~~~----~~~  342 (380)
                      .++|... ++||+|+||.||++.. .+++.||+|++..      ...+.+|++++ ...+||||+++++++..    .+.
T Consensus        16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~------~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~   89 (299)
T 3m2w_A           16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD------CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKC   89 (299)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEE
T ss_pred             ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc------cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCce
Confidence            3456555 7799999999999998 6789999999843      34677899888 55699999999999876    567


Q ss_pred             eeEEeecccCCChhhhcccccc--c---------ceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHK--I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~--~---------~~~~~aL~yLH~~~i  380 (380)
                      .++||||+++|+|.+++.....  .         .+++.||+|||+.+|
T Consensus        90 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i  138 (299)
T 3m2w_A           90 LLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINI  138 (299)
T ss_dssp             EEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            8999999999999999976532  1         338899999998874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.42  E-value=2.5e-13  Score=137.12  Aligned_cols=100  Identities=25%  Similarity=0.400  Sum_probs=80.8

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      .++.|+|++|.|++ +|. |+.+++|+.|+|++|+|+ .+|..++++++|+.|+|++|+|++ +| .|+.+++|+.|+|+
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            47778888888886 565 888888888888888888 788888888888888888888885 77 78888888888888


Q ss_pred             CCcccccC-cccccc---ccccccCCCcc
Q 016905          157 SNNLTGRI-PMQLFS---VATFNFTGTHL  181 (380)
Q Consensus       157 ~N~l~g~~-p~~~~~---~~~~~~~gN~~  181 (380)
                      +|+|++.+ |..+..   +..+++.+|+.
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l  545 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSL  545 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence            88888776 776654   45667777764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.42  E-value=2e-13  Score=130.12  Aligned_cols=115  Identities=19%  Similarity=0.188  Sum_probs=95.0

Q ss_pred             CceeeEecCC-----------CEEEEEeCCCCCccccchhHh-CCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCc
Q 016905           67 SWSHVTCRNG-----------NVISLTLGSNGFSGKISPSIT-KLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANN  134 (380)
Q Consensus        67 ~w~gv~c~~~-----------~l~~l~L~~n~l~g~~p~~~~-~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N  134 (380)
                      .|..+.|++.           .++.|+|++|.|++..+..+. ++++|+.|+|++|+|++..|..|..+++|+.|+|++|
T Consensus        19 ~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           19 ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             ETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            6778888754           578899999999988777787 8999999999999999887888999999999999999


Q ss_pred             cccccCCccccCCCCCCEEECcCCcccccCcccccc---ccccccCCCcc
Q 016905          135 KFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS---VATFNFTGTHL  181 (380)
Q Consensus       135 ~l~g~iP~~~~~l~~L~~L~ls~N~l~g~~p~~~~~---~~~~~~~gN~~  181 (380)
                      +|++..|..|..+++|+.|+|++|++++..|..+..   +..+.+.+|..
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l  148 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI  148 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC
Confidence            999777778899999999999999998777765543   45556666653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.42  E-value=2.1e-14  Score=151.88  Aligned_cols=108  Identities=26%  Similarity=0.350  Sum_probs=89.3

Q ss_pred             CEEEEEeCCCCCc-----cccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCC
Q 016905           77 NVISLTLGSNGFS-----GKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLK  151 (380)
Q Consensus        77 ~l~~l~L~~n~l~-----g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~  151 (380)
                      +|+.|+|++|.++     +..|..|.++++|+.|+|++|+|++..|..+..+++|+.|+|++|+|++..|..+.  ++|+
T Consensus       452 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~  529 (844)
T 3j0a_A          452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLE  529 (844)
T ss_dssp             TCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCC
T ss_pred             ccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--cccc
Confidence            5666666666665     34455678888999999999999988888889999999999999999976666665  7899


Q ss_pred             EEECcCCcccccCccccccccccccCCCccccCCC
Q 016905          152 HLDLSSNNLTGRIPMQLFSVATFNFTGTHLICGSS  186 (380)
Q Consensus       152 ~L~ls~N~l~g~~p~~~~~~~~~~~~gN~~lc~~~  186 (380)
                      .|||++|+|++.+|..+.++..+++.|||+.|+++
T Consensus       530 ~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          530 ILDISRNQLLAPNPDVFVSLSVLDITHNKFICECE  564 (844)
T ss_dssp             EEEEEEECCCCCCSCCCSSCCEEEEEEECCCCSSS
T ss_pred             EEECCCCcCCCCChhHhCCcCEEEecCCCcccccc
Confidence            99999999999999888888999999999999654

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.42  E-value=7.1e-14  Score=128.96  Aligned_cols=107  Identities=18%  Similarity=0.247  Sum_probs=90.9

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeEEe
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      .++|+..+.||+|+||.||+|.. .+++.||||++....   ..+.+.+|++.+.++ +|+|++++++++......++||
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~   85 (298)
T 1csn_A            9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS---DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVI   85 (298)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT---TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEE
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC---ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEE
Confidence            35688899999999999999997 679999999985322   235688999999999 8999999999999999999999


Q ss_pred             ecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      ||+ +|+|.++++....          ..+++.||+|||+.+|
T Consensus        86 e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i  127 (298)
T 1csn_A           86 DLL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSL  127 (298)
T ss_dssp             ECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred             Eec-CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            999 9999999985432          1348999999999875

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.42  E-value=1.5e-13  Score=139.74  Aligned_cols=109  Identities=24%  Similarity=0.298  Sum_probs=69.6

Q ss_pred             CEEEEEeCCCCCccc-cchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEEC
Q 016905           77 NVISLTLGSNGFSGK-ISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~-~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~l  155 (380)
                      +|+.|+|++|.+++. +|..++.+++|+.|+|++|++++..|..++++++|++|+|++|++++.+|..|.++++|+.||+
T Consensus       449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  528 (606)
T 3vq2_A          449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC  528 (606)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence            566666666666663 5556666666666666666666666666666666666666666666666666666666666666


Q ss_pred             cCCcccccCcccccc----ccccccCCCccccCCC
Q 016905          156 SSNNLTGRIPMQLFS----VATFNFTGTHLICGSS  186 (380)
Q Consensus       156 s~N~l~g~~p~~~~~----~~~~~~~gN~~lc~~~  186 (380)
                      ++|+++ .+|..+..    +..+++.+|++.|+++
T Consensus       529 ~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          529 SFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             TTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             CCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            666666 45554432    3445667777766543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.41  E-value=1.2e-13  Score=116.79  Aligned_cols=84  Identities=31%  Similarity=0.379  Sum_probs=39.9

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCcccccc-CCccccCCCCCCEEEC
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS-IPATWSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~-iP~~~~~l~~L~~L~l  155 (380)
                      +|+.|+|++|.+++.  ..+..+++|++|+|++|.+++.+|..+..+++|++|+|++|++++. .+..+..+++|+.|++
T Consensus        50 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l  127 (168)
T 2ell_A           50 NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL  127 (168)
T ss_dssp             GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred             CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence            444455555554443  3444445555555555555444444444455555555555555431 1134444555555555


Q ss_pred             cCCcccc
Q 016905          156 SSNNLTG  162 (380)
Q Consensus       156 s~N~l~g  162 (380)
                      ++|.+++
T Consensus       128 ~~N~l~~  134 (168)
T 2ell_A          128 FNCEVTN  134 (168)
T ss_dssp             CSSGGGT
T ss_pred             eCCcCcc
Confidence            5555443

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.41  E-value=9.2e-14  Score=130.50  Aligned_cols=106  Identities=25%  Similarity=0.360  Sum_probs=86.2

Q ss_pred             HHhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcC--cCCCCccceeeeeCC----C
Q 016905          268 LATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA--IHKNLLQLIGYCTTS----S  341 (380)
Q Consensus       268 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l--~H~Niv~l~g~~~~~----~  341 (380)
                      ...++|+..+.||+|+||.||+|+. +++.||||++...    ....+..|.+++...  +||||+++++++...    +
T Consensus        34 ~~~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~----~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~  108 (337)
T 3mdy_A           34 TIAKQIQMVKQIGKGRYGEVWMGKW-RGEKVAVKVFFTT----EEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWT  108 (337)
T ss_dssp             THHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEEEGG----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGC
T ss_pred             ccccceEEEeEeecCCCeEEEEEEE-CCceEEEEEEecc----ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCC
Confidence            3456789999999999999999998 5899999998532    244556666666654  899999999999876    6


Q ss_pred             ceeEEeecccCCChhhhcccccc--------cceeeeeecceeee
Q 016905          342 ERILVYPFMQNLSVAYRLRVSHK--------IYTKIISLSSLHCF  378 (380)
Q Consensus       342 ~~~lV~Ey~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~  378 (380)
                      ..++||||+++|+|.++++....        ..+++.||+|||+.
T Consensus       109 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~  153 (337)
T 3mdy_A          109 QLYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTE  153 (337)
T ss_dssp             EEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHSC
T ss_pred             ceEEEEeccCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            78999999999999999975432        23488999999987

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.41  E-value=3.9e-13  Score=136.58  Aligned_cols=92  Identities=20%  Similarity=0.223  Sum_probs=66.0

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +++.|+|++|.+++..+..|.++++|++|+|++|++++..|..|+++++|++|+|++|++++..|.+|+++++|++|+++
T Consensus        33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  112 (606)
T 3vq2_A           33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV  112 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred             CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence            56777777777777766677777777777777777776667777777777777777777776667777777777777777


Q ss_pred             CCcccccCcccc
Q 016905          157 SNNLTGRIPMQL  168 (380)
Q Consensus       157 ~N~l~g~~p~~~  168 (380)
                      +|.+++..|..+
T Consensus       113 ~n~l~~~~~~~~  124 (606)
T 3vq2_A          113 ETKLASLESFPI  124 (606)
T ss_dssp             TSCCCCSSSSCC
T ss_pred             CCcccccccccc
Confidence            777765544443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.41  E-value=4.3e-13  Score=116.45  Aligned_cols=89  Identities=25%  Similarity=0.297  Sum_probs=82.6

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++..+..|.++++|+.|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|+.|+|+
T Consensus        55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (193)
T 2wfh_A           55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG  134 (193)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence            89999999999999888899999999999999999999888899999999999999999996666679999999999999


Q ss_pred             CCcccccCc
Q 016905          157 SNNLTGRIP  165 (380)
Q Consensus       157 ~N~l~g~~p  165 (380)
                      +|.+.+.-.
T Consensus       135 ~N~~~C~c~  143 (193)
T 2wfh_A          135 ANPLYCDCN  143 (193)
T ss_dssp             SSCEECSGG
T ss_pred             CCCeecCCc
Confidence            999986543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.40  E-value=3.4e-13  Score=115.12  Aligned_cols=89  Identities=22%  Similarity=0.318  Sum_probs=81.6

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++..+..|.++++|++|+|++|+|++..|..++.+++|++|+|++|++++..|..+..+++|+.|+++
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A           53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence            79999999999998777778999999999999999998877788999999999999999996655567899999999999


Q ss_pred             CCcccccCc
Q 016905          157 SNNLTGRIP  165 (380)
Q Consensus       157 ~N~l~g~~p  165 (380)
                      +|.+++..|
T Consensus       133 ~N~~~~~~~  141 (177)
T 2o6r_A          133 TNPWDCSCP  141 (177)
T ss_dssp             SSCBCCCHH
T ss_pred             CCCeeccCc
Confidence            999998776

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.40  E-value=8.5e-14  Score=130.21  Aligned_cols=111  Identities=24%  Similarity=0.378  Sum_probs=88.0

Q ss_pred             HhcCcccccccccCCCeeEEEEEe--CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcC---cCCCCccceeeee----
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL--SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVA---IHKNLLQLIGYCT----  338 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l---~H~Niv~l~g~~~----  338 (380)
                      +.++|+..+.||+|+||.||+|..  .+|+.||+|++.... .......+.+|+.++..+   +||||+++++++.    
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~   88 (326)
T 1blx_A            9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   88 (326)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred             chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence            457889999999999999999998  468899999986322 222234567788777766   8999999999987    


Q ss_pred             -CCCceeEEeecccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          339 -TSSERILVYPFMQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       339 -~~~~~~lV~Ey~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                       .....++||||++ |+|.+++.....           ..+++.||+|||+.||
T Consensus        89 ~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~gi  141 (326)
T 1blx_A           89 DRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRV  141 (326)
T ss_dssp             SSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence             4567899999998 699999875432           1348999999999875

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.40  E-value=1.8e-13  Score=128.33  Aligned_cols=110  Identities=15%  Similarity=0.243  Sum_probs=87.2

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHH-HHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVH-LISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~-~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      .++|+..+.||+|+||.||+|.. .+|+.||||++...........+..|+. ++..++||||+++++++..++..++||
T Consensus        21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~  100 (327)
T 3aln_A           21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICM  100 (327)
T ss_dssp             SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEE
Confidence            46788889999999999999998 5789999999965433334556667766 677889999999999999999999999


Q ss_pred             ecccCCChhhhccc-----ccc---------cceeeeeecceeee-cC
Q 016905          348 PFMQNLSVAYRLRV-----SHK---------IYTKIISLSSLHCF-SL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~-----~~~---------~~~~~~aL~yLH~~-~i  380 (380)
                      ||+++ +|.+++..     ...         ..+++.||.|||+. +|
T Consensus       101 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~i  147 (327)
T 3aln_A          101 ELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKI  147 (327)
T ss_dssp             CCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             eecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCCE
Confidence            99985 88877752     111         13488999999987 64

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.40  E-value=8.1e-14  Score=134.88  Aligned_cols=101  Identities=20%  Similarity=0.337  Sum_probs=77.3

Q ss_pred             ccccccCCCeeEEEEEeC---CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeee--CCCceeEEeecc
Q 016905          276 SNIIGQGGFGKVYKGVLS---DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCT--TSSERILVYPFM  350 (380)
Q Consensus       276 ~~~lg~G~~g~Vy~~~~~---~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~--~~~~~~lV~Ey~  350 (380)
                      .++||+|+||.||+|...   +++.||||++...   ...+.+.+|++++.+++|||||++++++.  .....++||||+
T Consensus        26 g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e~~  102 (405)
T 3rgf_A           26 GCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGT---GISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYA  102 (405)
T ss_dssp             SCCCC-----EEEEEEESSSSCCCCEEEEECSSS---SCCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEECC
T ss_pred             CcEeeecCCeEEEEEEEccCCCCeEEEEEEECCC---CCCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEeCC
Confidence            568999999999999974   5789999999532   23457889999999999999999999995  466789999999


Q ss_pred             cCCChhhhccccc------------------ccceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSH------------------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~------------------~~~~~~~aL~yLH~~~i  380 (380)
                      + |+|.+++....                  ...+++.||+|||+.+|
T Consensus       103 ~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~i  149 (405)
T 3rgf_A          103 E-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWV  149 (405)
T ss_dssp             S-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             C-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            7 58888875321                  12358999999999876

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.40  E-value=1.1e-13  Score=129.88  Aligned_cols=108  Identities=19%  Similarity=0.259  Sum_probs=87.4

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCc-CCCCccceeeee--------C
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI-HKNLLQLIGYCT--------T  339 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~-H~Niv~l~g~~~--------~  339 (380)
                      ..+|+..++||+|+||.||+|.. .+++.||||++... .....+.+.+|+.++.++. ||||+++++++.        .
T Consensus        27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~  105 (337)
T 3ll6_A           27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSN-EEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTG  105 (337)
T ss_dssp             TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEES-SHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTS
T ss_pred             CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCC-chHHHHHHHHHHHHHHHhccCCChhhccccccccccccccC
Confidence            45688899999999999999998 57899999998532 3344677899999999996 999999999984        3


Q ss_pred             CCceeEEeecccCCChhhhcccc---cc---------cceeeeeecceeeec
Q 016905          340 SSERILVYPFMQNLSVAYRLRVS---HK---------IYTKIISLSSLHCFS  379 (380)
Q Consensus       340 ~~~~~lV~Ey~~~GsL~~~L~~~---~~---------~~~~~~aL~yLH~~~  379 (380)
                      ....++||||+. |+|.++++..   ..         ..+++.||+|||+.+
T Consensus       106 ~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~  156 (337)
T 3ll6_A          106 QAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQK  156 (337)
T ss_dssp             SEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             CceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            344789999996 7999988641   11         134899999999987

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.40  E-value=8.8e-14  Score=136.02  Aligned_cols=103  Identities=18%  Similarity=0.158  Sum_probs=84.7

Q ss_pred             cccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeEEeeccc
Q 016905          273 FSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERILVYPFMQ  351 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~lV~Ey~~  351 (380)
                      |...++||+|+||+||.+...+|+.||||++...    ..+.+.+|++++.++ +|||||++++++..++..++||||++
T Consensus        17 ~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~----~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~   92 (434)
T 2rio_A           17 VVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID----FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN   92 (434)
T ss_dssp             EEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG----GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS
T ss_pred             eeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH----HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC
Confidence            4446789999999998766668999999998532    345678999999886 89999999999999999999999995


Q ss_pred             CCChhhhcccccc----------------cceeeeeecceeeecC
Q 016905          352 NLSVAYRLRVSHK----------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       352 ~GsL~~~L~~~~~----------------~~~~~~aL~yLH~~~i  380 (380)
                       |+|.+++.....                ..+++.||+|||+.+|
T Consensus        93 -gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i  136 (434)
T 2rio_A           93 -LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLKI  136 (434)
T ss_dssp             -EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTTE
T ss_pred             -CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCCc
Confidence             799999975421                2458899999999875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.40  E-value=3.1e-13  Score=128.83  Aligned_cols=86  Identities=24%  Similarity=0.250  Sum_probs=58.4

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++..|..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|++++..|..|..+++|+.|+|+
T Consensus        65 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~  144 (361)
T 2xot_A           65 NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS  144 (361)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             ccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECC
Confidence            56667777777776666666777777777777777766555566666777777777777766666666666666666666


Q ss_pred             CCcccc
Q 016905          157 SNNLTG  162 (380)
Q Consensus       157 ~N~l~g  162 (380)
                      +|+|++
T Consensus       145 ~N~l~~  150 (361)
T 2xot_A          145 QNQISR  150 (361)
T ss_dssp             SSCCCS
T ss_pred             CCcCCe
Confidence            666664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.39  E-value=2e-13  Score=113.15  Aligned_cols=88  Identities=31%  Similarity=0.347  Sum_probs=81.1

Q ss_pred             CCEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCcccccc-CCccccCCCCCCEEE
Q 016905           76 GNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS-IPATWSQLSNLKHLD  154 (380)
Q Consensus        76 ~~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~-iP~~~~~l~~L~~L~  154 (380)
                      .+++.|+|++|.+++.  ..++.+++|++|+|++|.+++.+|..++.+++|++|+|++|++++. .|..+..+++|+.|+
T Consensus        42 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~  119 (149)
T 2je0_A           42 EELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD  119 (149)
T ss_dssp             TTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEE
T ss_pred             CCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEe
Confidence            3899999999999987  7899999999999999999998999999999999999999999973 558899999999999


Q ss_pred             CcCCcccccCc
Q 016905          155 LSSNNLTGRIP  165 (380)
Q Consensus       155 ls~N~l~g~~p  165 (380)
                      +++|++++..+
T Consensus       120 l~~N~l~~~~~  130 (149)
T 2je0_A          120 LFNCEVTNLND  130 (149)
T ss_dssp             CTTCGGGGSTT
T ss_pred             CcCCcccchHH
Confidence            99999997655

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.39  E-value=1.5e-13  Score=129.14  Aligned_cols=104  Identities=29%  Similarity=0.371  Sum_probs=81.7

Q ss_pred             hcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHH--HhcCcCCCCccceeeeeC-----CCc
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHL--ISVAIHKNLLQLIGYCTT-----SSE  342 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~--l~~l~H~Niv~l~g~~~~-----~~~  342 (380)
                      .++|+..+.||+|+||.||+|+. +++.||||++...    ..+.+..|.++  +..++||||+++++++..     ...
T Consensus        12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~----~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~   86 (336)
T 3g2f_A           12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFA----NRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRME   86 (336)
T ss_dssp             TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGG----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEE
T ss_pred             hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeecc----chhhHHHHHHHHHHHhccCcchhhheecccccccCCCce
Confidence            46788899999999999999987 7899999998532    24455555555  445899999999985532     235


Q ss_pred             eeEEeecccCCChhhhcccccc--------cceeeeeecceeee
Q 016905          343 RILVYPFMQNLSVAYRLRVSHK--------IYTKIISLSSLHCF  378 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~  378 (380)
                      .++||||+++|+|.++++....        ..+++.||+|||+.
T Consensus        87 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~~L~~LH~~  130 (336)
T 3g2f_A           87 YLLVMEYYPNGSLXKYLSLHTSDWVSSCRLAHSVTRGLAYLHTE  130 (336)
T ss_dssp             EEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCC
T ss_pred             EEEEEecCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHHhh
Confidence            6899999999999999975433        23589999999987

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.39  E-value=9.2e-13  Score=120.54  Aligned_cols=105  Identities=21%  Similarity=0.198  Sum_probs=88.8

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +++.|+|++|.+++..+..|.++++|++|+|++|++++..|..+.++++|++|+|++|++++..|..|.++++|+.|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            58899999999998887789999999999999999998777789999999999999999998888889999999999999


Q ss_pred             CCcccccCccccc---cccccccCCCcc
Q 016905          157 SNNLTGRIPMQLF---SVATFNFTGTHL  181 (380)
Q Consensus       157 ~N~l~g~~p~~~~---~~~~~~~~gN~~  181 (380)
                      +|++++..+..+.   ++..+++.+|..
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l  136 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLI  136 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred             CCCccccCchhcccCCCCCEEECcCCcc
Confidence            9999876654443   345566666653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.38  E-value=7.7e-13  Score=130.55  Aligned_cols=113  Identities=22%  Similarity=0.308  Sum_probs=90.4

Q ss_pred             CceeeEecCC-----------CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCcc
Q 016905           67 SWSHVTCRNG-----------NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK  135 (380)
Q Consensus        67 ~w~gv~c~~~-----------~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~  135 (380)
                      .|..|.|++.           .++.|+|++|++++..|..|.++++|++|+|++|.+++..|..|+++++|++|+|++|+
T Consensus        12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            4778888754           67889999999998888889999999999999999998888889999999999999999


Q ss_pred             ccccCCccccCCCCCCEEECcCCcccccCcccccc---ccccccCCC
Q 016905          136 FSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS---VATFNFTGT  179 (380)
Q Consensus       136 l~g~iP~~~~~l~~L~~L~ls~N~l~g~~p~~~~~---~~~~~~~gN  179 (380)
                      +++..+..|.++++|+.|||++|++++..|..+..   +..+.+.+|
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n  138 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN  138 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT
T ss_pred             CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC
Confidence            88555556788889999999999888777765543   333444444

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.38  E-value=6.1e-14  Score=132.77  Aligned_cols=110  Identities=15%  Similarity=0.136  Sum_probs=83.0

Q ss_pred             hcCcccccccccCCCeeEEEEEeC----CCcEEEEEEecccCCC----------chHHHHHHHHHHHhcCcCCCCcccee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLS----DNTKVAVKRLQDYYSP----------GGEAAFQREVHLISVAIHKNLLQLIG  335 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~----~g~~vavK~l~~~~~~----------~~~~~f~~e~~~l~~l~H~Niv~l~g  335 (380)
                      .++|+..+.||+|+||.||+|...    ++..+|||++......          ...+.+.+|+..+..++||||+++++
T Consensus        36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~  115 (345)
T 2v62_A           36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG  115 (345)
T ss_dssp             SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred             CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence            356888899999999999999984    5789999998643211          01234678889999999999999999


Q ss_pred             eeeC----CCceeEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          336 YCTT----SSERILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       336 ~~~~----~~~~~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ++..    .+..++||||+ +|+|.+++......         .+++.||+|||+.+|
T Consensus       116 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i  172 (345)
T 2v62_A          116 SGLTEFKGRSYRFMVMERL-GIDLQKISGQNGTFKKSTVLQLGIRMLDVLEYIHENEY  172 (345)
T ss_dssp             EEEEESSSCEEEEEEEECE-EEEHHHHCBGGGBCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             ccccccCCCcEEEEEEecc-CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9987    67789999999 99999999865432         348999999999875

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.38  E-value=1e-12  Score=120.18  Aligned_cols=102  Identities=24%  Similarity=0.327  Sum_probs=63.0

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++.  +.+..+++|++|+|++|.+++..|..++.+++|++|+|++|++++..|..|..+++|+.|+++
T Consensus        64 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  141 (272)
T 3rfs_A           64 NVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA  141 (272)
T ss_dssp             TCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECC
Confidence            566666666666652  356666666666666666666555556666666666666666665555556666666666666


Q ss_pred             CCcccccCcccc---ccccccccCCCc
Q 016905          157 SNNLTGRIPMQL---FSVATFNFTGTH  180 (380)
Q Consensus       157 ~N~l~g~~p~~~---~~~~~~~~~gN~  180 (380)
                      +|++++..|..+   .++..+++.+|.
T Consensus       142 ~n~l~~~~~~~~~~l~~L~~L~l~~n~  168 (272)
T 3rfs_A          142 HNQLQSLPKGVFDKLTNLTELDLSYNQ  168 (272)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCccCHHHhccCccCCEEECCCCC
Confidence            666665444333   233444555553

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.38  E-value=8.1e-13  Score=117.82  Aligned_cols=108  Identities=26%  Similarity=0.340  Sum_probs=95.8

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++..+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++|+|+ .+|..+..+++|+.|+|+
T Consensus        65 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~  143 (229)
T 3e6j_A           65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD  143 (229)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECC
T ss_pred             CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECC
Confidence            7999999999998666677899999999999999999877778899999999999999999 999999999999999999


Q ss_pred             CCcccccCcccc---ccccccccCCCccccCC
Q 016905          157 SNNLTGRIPMQL---FSVATFNFTGTHLICGS  185 (380)
Q Consensus       157 ~N~l~g~~p~~~---~~~~~~~~~gN~~lc~~  185 (380)
                      +|+|++..+..+   .++..+.+.+|++.|.+
T Consensus       144 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          144 QNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             CCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            999996655444   45577889999988753

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.38  E-value=4.6e-14  Score=133.91  Aligned_cols=103  Identities=18%  Similarity=0.223  Sum_probs=84.1

Q ss_pred             cCcccccccccCCCeeEEEEEeC---------CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCcc---------
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLS---------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQ---------  332 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~---------~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~---------  332 (380)
                      ++|+..+.||+|+||.||+|...         +++.||||++...      +.+.+|++++.+++||||++         
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~------~~~~~E~~~l~~l~h~niv~~~~~~~~~~  115 (352)
T 2jii_A           42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD------GRLFNEQNFFQRAAKPLQVNKWKKLYSTP  115 (352)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT------STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred             CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc------chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence            56888999999999999999984         3789999998532      46889999999999999987         


Q ss_pred             ------ceeeeeC-CCceeEEeecccCCChhhhcccc--ccc---------ceeeeeecceeeecC
Q 016905          333 ------LIGYCTT-SSERILVYPFMQNLSVAYRLRVS--HKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       333 ------l~g~~~~-~~~~~lV~Ey~~~GsL~~~L~~~--~~~---------~~~~~aL~yLH~~~i  380 (380)
                            +++++.. ++..++||||+ +|+|.+++...  ...         .+++.||+|||+.+|
T Consensus       116 ~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~i  180 (352)
T 2jii_A          116 LLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENEY  180 (352)
T ss_dssp             TCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence                  5677765 67789999999 99999999864  222         349999999999875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.38  E-value=9.9e-13  Score=133.70  Aligned_cols=104  Identities=16%  Similarity=0.154  Sum_probs=73.5

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|+|++|+|++..|..|+++++|+.|+|+
T Consensus        76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls  155 (597)
T 3oja_B           76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS  155 (597)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence            46677777777777777777777778888888877777777777777778888888777774444446777778888888


Q ss_pred             CCcccccCcccccc---ccccccCCCc
Q 016905          157 SNNLTGRIPMQLFS---VATFNFTGTH  180 (380)
Q Consensus       157 ~N~l~g~~p~~~~~---~~~~~~~gN~  180 (380)
                      +|.+++..|..+..   +..+++.+|.
T Consensus       156 ~N~l~~~~~~~~~~l~~L~~L~L~~N~  182 (597)
T 3oja_B          156 NNNLERIEDDTFQATTSLQNLQLSSNR  182 (597)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred             CCcCCCCChhhhhcCCcCcEEECcCCC
Confidence            88777766655443   3444455553

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.37  E-value=8e-14  Score=132.93  Aligned_cols=111  Identities=16%  Similarity=0.159  Sum_probs=83.8

Q ss_pred             HhcCcccccccccCCCeeEEEEEeCC------CcEEEEEEecccCCC----------chHHHHHHHHHHHhcCcCCCCcc
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVLSD------NTKVAVKRLQDYYSP----------GGEAAFQREVHLISVAIHKNLLQ  332 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~~~------g~~vavK~l~~~~~~----------~~~~~f~~e~~~l~~l~H~Niv~  332 (380)
                      ..++|+..+.||+|+||.||+|.+..      ++.||||++......          .....+..|+..+..++||||++
T Consensus        33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~  112 (364)
T 3op5_A           33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK  112 (364)
T ss_dssp             TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred             CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence            34578889999999999999999844      478999998532110          01123445666778889999999


Q ss_pred             ceeeeeCC----CceeEEeecccCCChhhhcccccc-c---------ceeeeeecceeeecC
Q 016905          333 LIGYCTTS----SERILVYPFMQNLSVAYRLRVSHK-I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       333 l~g~~~~~----~~~~lV~Ey~~~GsL~~~L~~~~~-~---------~~~~~aL~yLH~~~i  380 (380)
                      +++++...    ...++||||+ +|+|.+++..... .         .+++.||+|||+.+|
T Consensus       113 ~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~i  173 (364)
T 3op5_A          113 YWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEY  173 (364)
T ss_dssp             EEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            99998764    3479999999 9999999976422 1         348999999999875

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.37  E-value=5.4e-13  Score=134.28  Aligned_cols=92  Identities=21%  Similarity=0.353  Sum_probs=48.0

Q ss_pred             CEEEEEeCCCCCccccc-hhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCcccc-ccCCccccCCCCCCEEE
Q 016905           77 NVISLTLGSNGFSGKIS-PSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFS-GSIPATWSQLSNLKHLD  154 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p-~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~-g~iP~~~~~l~~L~~L~  154 (380)
                      +++.|+|++|.+++..| ..+.++++|++|+|++|.+++.+|..+..+++|++|+|++|+++ +.+|..+..+++|+.||
T Consensus       397 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~  476 (570)
T 2z63_A          397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD  476 (570)
T ss_dssp             TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEE
Confidence            45555555555555444 23455555555555555555555555555555555555555554 34555555555555555


Q ss_pred             CcCCcccccCcccc
Q 016905          155 LSSNNLTGRIPMQL  168 (380)
Q Consensus       155 ls~N~l~g~~p~~~  168 (380)
                      +++|++++..|..+
T Consensus       477 l~~n~l~~~~~~~~  490 (570)
T 2z63_A          477 LSQCQLEQLSPTAF  490 (570)
T ss_dssp             CTTSCCCEECTTTT
T ss_pred             CCCCccccCChhhh
Confidence            55555554444433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.37  E-value=6.7e-13  Score=133.93  Aligned_cols=86  Identities=27%  Similarity=0.353  Sum_probs=82.3

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccC-CccccCCCCCCEEEC
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSI-PATWSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~i-P~~~~~l~~L~~L~l  155 (380)
                      +|+.|+|++|.|+ .+|..|+++++|+.|+|++|+|++ +| .++.+++|+.|+|++|+|++.+ |..|+.+++|+.|+|
T Consensus       464 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L  540 (567)
T 1dce_A          464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL  540 (567)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred             cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence            8999999999999 899999999999999999999997 78 8999999999999999999887 999999999999999


Q ss_pred             cCCcccccCc
Q 016905          156 SSNNLTGRIP  165 (380)
Q Consensus       156 s~N~l~g~~p  165 (380)
                      ++|+|++.+|
T Consensus       541 ~~N~l~~~~~  550 (567)
T 1dce_A          541 QGNSLCQEEG  550 (567)
T ss_dssp             TTSGGGGSSS
T ss_pred             cCCcCCCCcc
Confidence            9999998766

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.37  E-value=7.5e-13  Score=129.93  Aligned_cols=108  Identities=21%  Similarity=0.270  Sum_probs=80.8

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|++++. | .+..+++|+.|+|++|.|++..|..|.++++|+.|+|++|++++..|..|..+++|+.|||+
T Consensus       197 ~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  274 (452)
T 3zyi_A          197 NLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA  274 (452)
T ss_dssp             TCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECC
Confidence            456666666666643 2 46667777778888888887778888888888888888888888888888888888888888


Q ss_pred             CCcccccCcccc---ccccccccCCCccccCCC
Q 016905          157 SNNLTGRIPMQL---FSVATFNFTGTHLICGSS  186 (380)
Q Consensus       157 ~N~l~g~~p~~~---~~~~~~~~~gN~~lc~~~  186 (380)
                      +|+|++..+..+   .++..+++.+|++.|++.
T Consensus       275 ~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          275 HNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             SSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             CCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            888886555443   345677888888888754

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.37  E-value=9.1e-13  Score=128.90  Aligned_cols=108  Identities=23%  Similarity=0.303  Sum_probs=78.2

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.++ .+| .+..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..|..|.++++|+.|||+
T Consensus       186 ~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  263 (440)
T 3zyj_A          186 NLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA  263 (440)
T ss_dssp             SCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECT
T ss_pred             ccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECC
Confidence            4555555555555 333 35666777777777777777777788888888888888888887777788888888888888


Q ss_pred             CCcccccCcccc---ccccccccCCCccccCCC
Q 016905          157 SNNLTGRIPMQL---FSVATFNFTGTHLICGSS  186 (380)
Q Consensus       157 ~N~l~g~~p~~~---~~~~~~~~~gN~~lc~~~  186 (380)
                      +|+|++..+..+   .++..+++.+||+.|++.
T Consensus       264 ~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          264 HNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             TSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred             CCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence            888886555443   345677888899888753

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.37  E-value=6.8e-13  Score=115.37  Aligned_cols=87  Identities=23%  Similarity=0.276  Sum_probs=55.3

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.++  .++.+..+++|++|+|++|.+++..|..++.+++|++|+|++|++++.+|..++.+++|+.|+++
T Consensus        67 ~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~  144 (197)
T 4ezg_A           67 NIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS  144 (197)
T ss_dssp             TCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECC
T ss_pred             CCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEcc
Confidence            5666666666443  33456666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCcccccCc
Q 016905          157 SNNLTGRIP  165 (380)
Q Consensus       157 ~N~l~g~~p  165 (380)
                      +|++.+.+|
T Consensus       145 ~n~~i~~~~  153 (197)
T 4ezg_A          145 YNGAITDIM  153 (197)
T ss_dssp             SCTBCCCCG
T ss_pred             CCCCccccH
Confidence            666333444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.36  E-value=1.4e-12  Score=128.08  Aligned_cols=102  Identities=22%  Similarity=0.270  Sum_probs=91.3

Q ss_pred             CceeeEecCC-----------CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCcc
Q 016905           67 SWSHVTCRNG-----------NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK  135 (380)
Q Consensus        67 ~w~gv~c~~~-----------~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~  135 (380)
                      .|..+.|++.           +++.|+|++|++++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|+
T Consensus        55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW  134 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence            4778999864           68999999999999999999999999999999999999989999999999999999999


Q ss_pred             ccccCCccccCCCCCCEEECcCCcccccCcccc
Q 016905          136 FSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQL  168 (380)
Q Consensus       136 l~g~iP~~~~~l~~L~~L~ls~N~l~g~~p~~~  168 (380)
                      +++..|..|..+++|+.|+|++|+++...+..+
T Consensus       135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  167 (452)
T 3zyi_A          135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF  167 (452)
T ss_dssp             CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTT
T ss_pred             CCccChhhhcccCCCCEEECCCCCcceeCHhHH
Confidence            997777779999999999999999985544333

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.36  E-value=5.7e-13  Score=126.39  Aligned_cols=115  Identities=22%  Similarity=0.310  Sum_probs=94.0

Q ss_pred             CCCCCceeeEecC--C-----------CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCee
Q 016905           63 SPCFSWSHVTCRN--G-----------NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSL  129 (380)
Q Consensus        63 ~~c~~w~gv~c~~--~-----------~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l  129 (380)
                      .+| .|.|+ |+.  .           +++.|+|++|.+++..+..|.++++|++|+|++|++++..|..|+++++|++|
T Consensus        28 ~~C-~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           28 LSC-DRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             CEE-CTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCC-CCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            566 88887 542  1           78999999999998777789999999999999999998888899999999999


Q ss_pred             eccCccccccCCccccCCCCCCEEECcCCcccccCcc--cc---ccccccccCCCc
Q 016905          130 NLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPM--QL---FSVATFNFTGTH  180 (380)
Q Consensus       130 ~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~~p~--~~---~~~~~~~~~gN~  180 (380)
                      +|++|++++..|..|.++++|++|++++|++++ +|.  .+   .++..+++.+|.
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~  160 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMD  160 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESS
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCc
Confidence            999999995444458999999999999999984 544  33   344555666653

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.36  E-value=1.1e-13  Score=129.57  Aligned_cols=113  Identities=18%  Similarity=0.311  Sum_probs=92.7

Q ss_pred             HHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCC-----chHHHHHHHHHHHhcCc--CCCCccceeeeeC
Q 016905          268 LATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSP-----GGEAAFQREVHLISVAI--HKNLLQLIGYCTT  339 (380)
Q Consensus       268 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-----~~~~~f~~e~~~l~~l~--H~Niv~l~g~~~~  339 (380)
                      ...++|+..+.||+|+||.||+|+. .+++.||||++......     ...+.+.+|++++.+++  |+||+++++++..
T Consensus        40 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~  119 (320)
T 3a99_A           40 PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER  119 (320)
T ss_dssp             CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEEC
T ss_pred             CccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEec
Confidence            3456788899999999999999997 67899999999643221     12356778999999996  5999999999999


Q ss_pred             CCceeEEeecccC-CChhhhccccccc---------ceeeeeecceeeecC
Q 016905          340 SSERILVYPFMQN-LSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       340 ~~~~~lV~Ey~~~-GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ++..++|+||+.. |+|.+++......         .+++.||+|||+.+|
T Consensus       120 ~~~~~lv~e~~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~~i  170 (320)
T 3a99_A          120 PDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGV  170 (320)
T ss_dssp             SSEEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             CCcEEEEEEcCCCCccHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            9999999999976 8999998764432         348999999998875

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.36  E-value=7.1e-13  Score=112.06  Aligned_cols=103  Identities=25%  Similarity=0.306  Sum_probs=89.4

Q ss_pred             CEEEEEeCCCCCc-cccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEEC
Q 016905           77 NVISLTLGSNGFS-GKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~l~-g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~l  155 (380)
                      +++.|+|++|.++ |.+|..+..+++|++|+|++|.+++.  ..++.+++|++|+|++|++++.+|..+..+++|+.|++
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            7899999999998 89999999999999999999999976  77999999999999999999889998888999999999


Q ss_pred             cCCcccccC-cccc---ccccccccCCCcc
Q 016905          156 SSNNLTGRI-PMQL---FSVATFNFTGTHL  181 (380)
Q Consensus       156 s~N~l~g~~-p~~~---~~~~~~~~~gN~~  181 (380)
                      ++|++++.. +..+   .++..+++.+|+.
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l  132 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNCEV  132 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSSGG
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCCcC
Confidence            999998632 2344   3456677788865

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.36  E-value=1.4e-13  Score=134.49  Aligned_cols=106  Identities=19%  Similarity=0.255  Sum_probs=86.4

Q ss_pred             hcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      ..+|+..++||+|+||+||.....+++.||||++...    ....+.+|++++.++ +|||||++++++...+..++|||
T Consensus        23 ~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~----~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E   98 (432)
T 3p23_A           23 KISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPE----CFSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIE   98 (432)
T ss_dssp             TEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTT----TEEECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHH----HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEE
Confidence            4467888999999999965544468999999999532    123467899999999 79999999999999999999999


Q ss_pred             cccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      |++ |+|.+++.....          ..+++.||+|||+.+|
T Consensus        99 ~~~-g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i  139 (432)
T 3p23_A           99 LCA-ATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHSLNI  139 (432)
T ss_dssp             CCS-EEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCC-CCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHCcC
Confidence            996 699999975432          1348899999999876

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.36  E-value=3.8e-13  Score=127.65  Aligned_cols=114  Identities=25%  Similarity=0.329  Sum_probs=78.2

Q ss_pred             HHHHHHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCc
Q 016905          264 RELQLATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSE  342 (380)
Q Consensus       264 ~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~  342 (380)
                      .+.....++|+..+.||+|+||.||+|.. .+|+.||||++...  ......+.+|++.+..++||||+++++++...+.
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~   93 (360)
T 3e3p_A           16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQD--PRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGE   93 (360)
T ss_dssp             HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECC--TTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECS
T ss_pred             hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecC--ccccHHHHHHHHHHHhcCCCCcccHHHhhhcccc
Confidence            45567788999999999999999999998 56899999998542  2234567788888999999999999999865333


Q ss_pred             -------eeEEeecccCCChhhhcc----cccc---------cceeeeeeccee--eecC
Q 016905          343 -------RILVYPFMQNLSVAYRLR----VSHK---------IYTKIISLSSLH--CFSL  380 (380)
Q Consensus       343 -------~~lV~Ey~~~GsL~~~L~----~~~~---------~~~~~~aL~yLH--~~~i  380 (380)
                             .++||||+++ +|.+.+.    ....         ..+++.||.|||  +.+|
T Consensus        94 ~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~i  152 (360)
T 3e3p_A           94 RDRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVNV  152 (360)
T ss_dssp             SCTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTCC
T ss_pred             ccccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCCe
Confidence                   7899999986 5554433    2211         234889999999  7765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.36  E-value=2.6e-13  Score=126.73  Aligned_cols=86  Identities=22%  Similarity=0.250  Sum_probs=69.6

Q ss_pred             CEEEEEeCCCCCccccchhH--hCCccCCeEEcCCCcCcccCChhhhCC-----cccCeeeccCccccccCCccccCCCC
Q 016905           77 NVISLTLGSNGFSGKISPSI--TKLKFLASLELQDNDLSGTLPDFLGSM-----THLQSLNLANNKFSGSIPATWSQLSN  149 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~--~~l~~L~~L~Ls~N~l~g~~p~~~~~l-----~~L~~l~Ls~N~l~g~iP~~~~~l~~  149 (380)
                      +|+.|+|++|.++|.+|..+  +.+++|++|+|++|++++. |..++.+     ++|++|+|++|++++..|..|+.+++
T Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~  174 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA  174 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred             CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence            67888888888888888776  7888888888888888876 7777777     78888888888888777788888888


Q ss_pred             CCEEECcCCccccc
Q 016905          150 LKHLDLSSNNLTGR  163 (380)
Q Consensus       150 L~~L~ls~N~l~g~  163 (380)
                      |+.||+++|++.|.
T Consensus       175 L~~L~Ls~N~l~~~  188 (312)
T 1wwl_A          175 LSTLDLSDNPELGE  188 (312)
T ss_dssp             CCEEECCSCTTCHH
T ss_pred             CCEEECCCCCcCcc
Confidence            88888888887765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.35  E-value=1.6e-12  Score=113.89  Aligned_cols=109  Identities=23%  Similarity=0.285  Sum_probs=94.7

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++..+..|.++++|++|+|++|++++..|..++.+++|++|+|++|++++..|..|..+++|+.|+++
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  132 (208)
T 2o6s_A           53 SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY  132 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECC
Confidence            79999999999997777778999999999999999997777778999999999999999997777778999999999999


Q ss_pred             CCcccccCcccc---ccccccccCCCccccCC
Q 016905          157 SNNLTGRIPMQL---FSVATFNFTGTHLICGS  185 (380)
Q Consensus       157 ~N~l~g~~p~~~---~~~~~~~~~gN~~lc~~  185 (380)
                      +|++++..+..+   .++..+.+.+|+..|..
T Consensus       133 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  164 (208)
T 2o6s_A          133 QNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC  164 (208)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred             CCccceeCHHHhccCCCccEEEecCCCeecCC
Confidence            999997665444   45677889999887754

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.35  E-value=3.5e-13  Score=127.10  Aligned_cols=107  Identities=19%  Similarity=0.210  Sum_probs=81.4

Q ss_pred             HhcCcccc-cccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeC----CCc
Q 016905          269 ATDNFSES-NIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT----SSE  342 (380)
Q Consensus       269 ~~~~~~~~-~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~----~~~  342 (380)
                      ..++|... ++||+|+||.||+|.. .+++.||||++...     .+........+..++||||+++++++..    ++.
T Consensus        26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~  100 (336)
T 3fhr_A           26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS-----PKARQEVDHHWQASGGPHIVCILDVYENMHHGKRC  100 (336)
T ss_dssp             GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEE
T ss_pred             ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc-----HHHHHHHHHHHHhcCCCChHHHHHHHhhccCCCce
Confidence            35677774 5799999999999998 46999999998531     1222222334566789999999999875    345


Q ss_pred             eeEEeecccCCChhhhcccccc--c---------ceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHK--I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~--~---------~~~~~aL~yLH~~~i  380 (380)
                      .++||||+++|+|.+++.....  .         .+++.||+|||+.+|
T Consensus       101 ~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~~i  149 (336)
T 3fhr_A          101 LLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNI  149 (336)
T ss_dssp             EEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            7999999999999999976532  1         348999999999874

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.35  E-value=1.4e-12  Score=132.46  Aligned_cols=114  Identities=18%  Similarity=0.181  Sum_probs=94.1

Q ss_pred             ceeeEecCC-----------CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccc
Q 016905           68 WSHVTCRNG-----------NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKF  136 (380)
Q Consensus        68 w~gv~c~~~-----------~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l  136 (380)
                      +..+.|++.           .++.|+|++|.+++..|..|+++++|++|+|++|++++..|..|+++++|++|+|++|++
T Consensus        14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   93 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL   93 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence            445778653           688999999999988888999999999999999999988899999999999999999999


Q ss_pred             cccCCccccCCCCCCEEECcCCcccccCccccc---cccccccCCCcc
Q 016905          137 SGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLF---SVATFNFTGTHL  181 (380)
Q Consensus       137 ~g~iP~~~~~l~~L~~L~ls~N~l~g~~p~~~~---~~~~~~~~gN~~  181 (380)
                      ++..|..|+++++|++|++++|.+++..|..+.   ++..+.+.+|..
T Consensus        94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l  141 (606)
T 3t6q_A           94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI  141 (606)
T ss_dssp             SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCC
T ss_pred             cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcc
Confidence            988899999999999999999999875454443   344555555543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.35  E-value=2.8e-13  Score=140.72  Aligned_cols=91  Identities=27%  Similarity=0.416  Sum_probs=86.9

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.|+ .+|..|++|++|++|+|++|.|+ .+|..|++|++|++|+|++|+|+ .||..|++|++|+.|+|+
T Consensus       248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred             CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence            7999999999999 99999999999999999999999 89999999999999999999998 999999999999999999


Q ss_pred             CCcccccCcccccc
Q 016905          157 SNNLTGRIPMQLFS  170 (380)
Q Consensus       157 ~N~l~g~~p~~~~~  170 (380)
                      +|+|+|.+|..+..
T Consensus       325 ~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          325 GNPLEKQFLKILTE  338 (727)
T ss_dssp             TSCCCSHHHHHHHH
T ss_pred             CCccCCCChHHHhh
Confidence            99999999977644

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.35  E-value=9.8e-13  Score=133.62  Aligned_cols=94  Identities=23%  Similarity=0.217  Sum_probs=55.7

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcc---cCChhhhCCcccCeeeccCccccccCCccccCCCCCCEE
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSG---TLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHL  153 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g---~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L  153 (380)
                      +++.|+|++|.+++..|..++++++|++|+|++|.+++   ..+..++.+++|+.|+|++|++++.+|..|..+++|+.|
T Consensus       426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  505 (606)
T 3t6q_A          426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV  505 (606)
T ss_dssp             TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence            56666666666666666666666666666666666655   222445566666666666666665555566666666666


Q ss_pred             ECcCCcccccCcccccc
Q 016905          154 DLSSNNLTGRIPMQLFS  170 (380)
Q Consensus       154 ~ls~N~l~g~~p~~~~~  170 (380)
                      ||++|++++.+|..+..
T Consensus       506 ~Ls~N~l~~~~~~~l~~  522 (606)
T 3t6q_A          506 DLSHNRLTSSSIEALSH  522 (606)
T ss_dssp             ECCSSCCCGGGGGGGTT
T ss_pred             ECCCCccCcCChhHhCc
Confidence            66666666555544443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.35  E-value=1.3e-12  Score=123.68  Aligned_cols=87  Identities=25%  Similarity=0.203  Sum_probs=78.7

Q ss_pred             CEEEEEeCC-CCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEEC
Q 016905           77 NVISLTLGS-NGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~-n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~l  155 (380)
                      +|+.|+|++ |.|++..|..|++|++|+.|+|++|+|+|..|..|++|++|+.|||++|+|++..|..|..+. |+.|+|
T Consensus        32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l  110 (347)
T 2ifg_A           32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL  110 (347)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred             CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence            799999996 999999889999999999999999999999999999999999999999999965555566555 999999


Q ss_pred             cCCcccccC
Q 016905          156 SSNNLTGRI  164 (380)
Q Consensus       156 s~N~l~g~~  164 (380)
                      ++|.|...-
T Consensus       111 ~~N~~~c~c  119 (347)
T 2ifg_A          111 SGNPLHCSC  119 (347)
T ss_dssp             CSSCCCCCG
T ss_pred             eCCCccCCC
Confidence            999998653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.34  E-value=4.8e-13  Score=137.06  Aligned_cols=102  Identities=19%  Similarity=0.315  Sum_probs=87.8

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCc-Ccc-cCChhhhCC------cccCeeeccCccccccCCc--cccC
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDND-LSG-TLPDFLGSM------THLQSLNLANNKFSGSIPA--TWSQ  146 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~-l~g-~~p~~~~~l------~~L~~l~Ls~N~l~g~iP~--~~~~  146 (380)
                      +|+.|+|++|.+.|.+|..|+++++|++|+|++|+ ++| .+|..++++      ++|++|+|++|+++ .||.  .+++
T Consensus       250 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~  328 (636)
T 4eco_A          250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQK  328 (636)
T ss_dssp             TCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTT
T ss_pred             CCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhcc
Confidence            78999999999999999999999999999999998 998 899988887      89999999999999 8998  8999


Q ss_pred             CCCCCEEECcCCcccccCcccccc---ccccccCCCc
Q 016905          147 LSNLKHLDLSSNNLTGRIPMQLFS---VATFNFTGTH  180 (380)
Q Consensus       147 l~~L~~L~ls~N~l~g~~p~~~~~---~~~~~~~gN~  180 (380)
                      +++|+.|++++|+++|.+| .+..   +..+.+.+|.
T Consensus       329 l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~  364 (636)
T 4eco_A          329 MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ  364 (636)
T ss_dssp             CTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE
T ss_pred             CCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc
Confidence            9999999999999999998 5543   3445555554

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.34  E-value=3.4e-13  Score=135.34  Aligned_cols=105  Identities=10%  Similarity=0.087  Sum_probs=79.4

Q ss_pred             cccccccCCCeeEEEEEeCCCcEEEEEEecccCCC-c------hHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          275 ESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSP-G------GEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       275 ~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~-~------~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ..++||+|+||.||+|.. .+..+++|+....... .      ..+.|.+|++++.+++||||+++..++...+..++||
T Consensus       340 ~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVm  418 (540)
T 3en9_A          340 PEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMM  418 (540)
T ss_dssp             --------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEE
T ss_pred             CCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEE
Confidence            367899999999999965 6788999987532211 1      1355899999999999999998888888888889999


Q ss_pred             ecccCCChhhhcccc-cccceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVS-HKIYTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~-~~~~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.++++.. ....+++.||+|||+.+|
T Consensus       419 E~~~ggsL~~~l~~~~~i~~qi~~aL~~LH~~gI  452 (540)
T 3en9_A          419 SYINGKLAKDVIEDNLDIAYKIGEIVGKLHKNDV  452 (540)
T ss_dssp             ECCCSEEHHHHSTTCTHHHHHHHHHHHHHHHTTE
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence            999999999999862 334679999999999875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.34  E-value=1.9e-12  Score=121.49  Aligned_cols=106  Identities=23%  Similarity=0.273  Sum_probs=88.9

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++..|..+.++++|+.|+|++|.+++..|..+..+++|+.|+|++|+++ .+|..+..+++|+.|+++
T Consensus       193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~  271 (330)
T 1xku_A          193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH  271 (330)
T ss_dssp             TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred             cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECC
Confidence            6888999999999888888999999999999999999888888999999999999999999 889889999999999999


Q ss_pred             CCcccccCccccc---------cccccccCCCcccc
Q 016905          157 SNNLTGRIPMQLF---------SVATFNFTGTHLIC  183 (380)
Q Consensus       157 ~N~l~g~~p~~~~---------~~~~~~~~gN~~lc  183 (380)
                      +|++++..+..+.         .+..+++.+|+..+
T Consensus       272 ~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             CCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence            9999865554442         23456677787654

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.34  E-value=1.8e-13  Score=130.81  Aligned_cols=109  Identities=9%  Similarity=-0.007  Sum_probs=73.9

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC--CchHHHHHHHH---HHHhcCcCCCCccce-------ee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS--PGGEAAFQREV---HLISVAIHKNLLQLI-------GY  336 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~f~~e~---~~l~~l~H~Niv~l~-------g~  336 (380)
                      ...|+..+.||+|+||.||+|.. .+|+.||||++.....  ....+.+.+|+   ..+.. +||||++++       ++
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~  139 (371)
T 3q60_A           61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDA  139 (371)
T ss_dssp             EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCEE
T ss_pred             ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehh
Confidence            34578889999999999999998 5789999999974332  22356677885   45555 699988755       33


Q ss_pred             eeCC-----------------CceeEEeecccCCChhhhcccc---------------ccc-ceeeeeecceeeecC
Q 016905          337 CTTS-----------------SERILVYPFMQNLSVAYRLRVS---------------HKI-YTKIISLSSLHCFSL  380 (380)
Q Consensus       337 ~~~~-----------------~~~~lV~Ey~~~GsL~~~L~~~---------------~~~-~~~~~aL~yLH~~~i  380 (380)
                      +..+                 ...++|||||+ |+|.++++..               ... .+++.||+|||+++|
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~i  215 (371)
T 3q60_A          140 VAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKGL  215 (371)
T ss_dssp             EEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             eecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHHCCC
Confidence            3222                 23799999999 8999999752               111 568999999999875

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.34  E-value=3.3e-13  Score=131.38  Aligned_cols=103  Identities=25%  Similarity=0.430  Sum_probs=80.3

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCC----C--cee
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS----S--ERI  344 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~----~--~~~  344 (380)
                      .|+..++||+|+||.||+|+. .+|+.||||++....     +.+.+|++++.+++|||||++++++...    +  ..+
T Consensus        55 ~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~-----~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~  129 (420)
T 1j1b_A           55 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK-----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN  129 (420)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT-----TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred             eEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc-----hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence            577789999999999999998 569999999985421     2234799999999999999999988532    2  257


Q ss_pred             EEeecccCCChhhhccc----ccc---------cceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRV----SHK---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~----~~~---------~~~~~~aL~yLH~~~i  380 (380)
                      +||||+++ ++.+.++.    ...         ..+++.||+|||+++|
T Consensus       130 lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~i  177 (420)
T 1j1b_A          130 LVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGI  177 (420)
T ss_dssp             EEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred             eehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            89999986 67666542    111         2458999999999875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.34  E-value=2.5e-12  Score=120.72  Aligned_cols=112  Identities=21%  Similarity=0.294  Sum_probs=94.9

Q ss_pred             CceeeEecCC-----------CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCcc
Q 016905           67 SWSHVTCRNG-----------NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK  135 (380)
Q Consensus        67 ~w~gv~c~~~-----------~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~  135 (380)
                      .|..+.|++.           .++.|+|++|.+++..+..|+++++|++|+|++|++++..|..++++++|++|+|++|+
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  111 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ  111 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred             CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence            7899999853           68899999999998888899999999999999999999889999999999999999999


Q ss_pred             ccccCCccccCCCCCCEEECcCCcccccCccccc---cccccccCCCcc
Q 016905          136 FSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLF---SVATFNFTGTHL  181 (380)
Q Consensus       136 l~g~iP~~~~~l~~L~~L~ls~N~l~g~~p~~~~---~~~~~~~~gN~~  181 (380)
                      ++ .+|..+.  ++|+.|++++|.+++..|..+.   ++..+.+.+|..
T Consensus       112 l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  157 (330)
T 1xku_A          112 LK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL  157 (330)
T ss_dssp             CS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCC
T ss_pred             CC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcC
Confidence            99 7887765  7899999999999876665443   345555666543

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.34  E-value=3.4e-13  Score=126.41  Aligned_cols=108  Identities=19%  Similarity=0.293  Sum_probs=90.1

Q ss_pred             hcCcccccccccCCCeeEEEEEe--CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCC------CccceeeeeCCC
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL--SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKN------LLQLIGYCTTSS  341 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~--~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~N------iv~l~g~~~~~~  341 (380)
                      .++|+..+.||+|+||.||+|..  .+++.||||++...  ....+.+.+|++++..++|+|      ++++++++...+
T Consensus        13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~   90 (339)
T 1z57_A           13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV--DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHG   90 (339)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS--HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETT
T ss_pred             cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC--CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCC
Confidence            35788899999999999999987  46889999999532  234577899999999887765      999999999999


Q ss_pred             ceeEEeecccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          342 ERILVYPFMQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       342 ~~~lV~Ey~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      ..++||||+ +|+|.+++.....           ..+++.||+|||+.+|
T Consensus        91 ~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  139 (339)
T 1z57_A           91 HICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKL  139 (339)
T ss_dssp             EEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             cEEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHCCC
Confidence            999999999 8899999976542           1348999999999875

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.33  E-value=2.7e-12  Score=120.66  Aligned_cols=112  Identities=21%  Similarity=0.288  Sum_probs=96.3

Q ss_pred             CceeeEecCC-----------CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCcc
Q 016905           67 SWSHVTCRNG-----------NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK  135 (380)
Q Consensus        67 ~w~gv~c~~~-----------~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~  135 (380)
                      .|..+.|++.           +++.|+|++|.+++..|..|.++++|++|+|++|++++..|..++++++|++|+|++|+
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  113 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH  113 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred             cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence            7999999853           68999999999998888899999999999999999999889999999999999999999


Q ss_pred             ccccCCccccCCCCCCEEECcCCcccccCccccc---cccccccCCCcc
Q 016905          136 FSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLF---SVATFNFTGTHL  181 (380)
Q Consensus       136 l~g~iP~~~~~l~~L~~L~ls~N~l~g~~p~~~~---~~~~~~~~gN~~  181 (380)
                      ++ .+|..+.  ++|+.|++++|++++..+..+.   ++..+.+.+|..
T Consensus       114 l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  159 (332)
T 2ft3_A          114 LV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL  159 (332)
T ss_dssp             CC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred             CC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence            99 8888766  7999999999999865554443   445666777654

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.33  E-value=6.1e-13  Score=129.84  Aligned_cols=108  Identities=15%  Similarity=0.242  Sum_probs=89.0

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC------cCCCCccceeeeeCCCc
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA------IHKNLLQLIGYCTTSSE  342 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l------~H~Niv~l~g~~~~~~~  342 (380)
                      ...|+..++||+|+||.||+|.. .+++.||||++...  ....+.+.+|++++..+      .|+||+++++++...+.
T Consensus        96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~  173 (429)
T 3kvw_A           96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE--KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNH  173 (429)
T ss_dssp             TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC--HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTE
T ss_pred             cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc--cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCe
Confidence            34688899999999999999988 56899999999532  23356788898888877      56799999999999999


Q ss_pred             eeEEeecccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      .++||||+. |+|.+++.....           ..+++.||+|||+.+|
T Consensus       174 ~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i  221 (429)
T 3kvw_A          174 ICMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNRI  221 (429)
T ss_dssp             EEEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHTE
T ss_pred             EEEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            999999996 699999875432           2348999999999875

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.33  E-value=4.9e-13  Score=123.20  Aligned_cols=107  Identities=16%  Similarity=0.257  Sum_probs=87.3

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeee-eCCCceeEEe
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYC-TTSSERILVY  347 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~-~~~~~~~lV~  347 (380)
                      .++|+..+.||+|+||.||+|.. .+++.||||++....   ..+.+.+|++++.+++|++++..++++ ...+..++||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~   84 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT---KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM   84 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCS---SCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCc---chhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEE
Confidence            46788899999999999999997 679999999985422   235689999999999999988777766 4566779999


Q ss_pred             ecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      ||+ +|+|.++++....          ..+++.||+|||+.+|
T Consensus        85 e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i  126 (296)
T 3uzp_A           85 ELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNF  126 (296)
T ss_dssp             ECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             Eec-CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            999 8999999973322          1348999999999874

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.33  E-value=2.4e-12  Score=118.24  Aligned_cols=105  Identities=22%  Similarity=0.257  Sum_probs=84.8

Q ss_pred             CEEEEEeCCCC-CccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEEC
Q 016905           77 NVISLTLGSNG-FSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~-l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~l  155 (380)
                      +|+.|+|++|. +++..|..+..+++|++|+|++|.+++..|..+..+++|++|+|++|++++..|..|+.+++|+.|++
T Consensus        81 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  160 (285)
T 1ozn_A           81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL  160 (285)
T ss_dssp             TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence            78889999997 77666788888999999999999998888888888999999999999998666667888999999999


Q ss_pred             cCCcccccCccccc---cccccccCCCcc
Q 016905          156 SSNNLTGRIPMQLF---SVATFNFTGTHL  181 (380)
Q Consensus       156 s~N~l~g~~p~~~~---~~~~~~~~gN~~  181 (380)
                      ++|++++..+..+.   ++..+++.+|..
T Consensus       161 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          161 HGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCcccccCHHHhcCccccCEEECCCCcc
Confidence            99988865554443   445666777653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.33  E-value=2.1e-12  Score=127.49  Aligned_cols=109  Identities=22%  Similarity=0.294  Sum_probs=96.3

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++..+..+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|++++..|..|..+++|+.|||+
T Consensus       225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  304 (477)
T 2id5_A          225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS  304 (477)
T ss_dssp             CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred             cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECC
Confidence            68889999999986555789999999999999999998888889999999999999999999999999999999999999


Q ss_pred             CCcccccCcccc---ccccccccCCCccccCC
Q 016905          157 SNNLTGRIPMQL---FSVATFNFTGTHLICGS  185 (380)
Q Consensus       157 ~N~l~g~~p~~~---~~~~~~~~~gN~~lc~~  185 (380)
                      +|++++..+..+   .++..+.+.+|++.|.+
T Consensus       305 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c  336 (477)
T 2id5_A          305 GNQLTTLEESVFHSVGNLETLILDSNPLACDC  336 (477)
T ss_dssp             SSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred             CCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence            999997666544   45677889999998864

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.32  E-value=9.1e-13  Score=122.63  Aligned_cols=110  Identities=13%  Similarity=0.143  Sum_probs=77.5

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchH-HHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGE-AAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~-~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      .++|+..+.||+|+||.||+|.. .+|+.||||++......... +.+..+..++..++||||+++++++..++..++||
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~  103 (318)
T 2dyl_A           24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM  103 (318)
T ss_dssp             GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence            45788889999999999999998 47899999999643333233 33445556788889999999999999999999999


Q ss_pred             ecccCCChhhhccccc-c---------cceeeeeecceeee-cC
Q 016905          348 PFMQNLSVAYRLRVSH-K---------IYTKIISLSSLHCF-SL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~-~---------~~~~~~aL~yLH~~-~i  380 (380)
                      ||+ ++.+..+..... .         ..+++.||+|||+. +|
T Consensus       104 e~~-~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i  146 (318)
T 2dyl_A          104 ELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKHGV  146 (318)
T ss_dssp             CCC-SEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             ecc-CCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhCCE
Confidence            999 445554443211 1         23488999999985 64

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.32  E-value=5.4e-13  Score=122.79  Aligned_cols=108  Identities=16%  Similarity=0.261  Sum_probs=84.4

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeee-eCCCceeEE
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYC-TTSSERILV  346 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~-~~~~~~~lV  346 (380)
                      ..++|+..+.||+|+||.||+|.. .+++.||||++....   ..+.+.+|++++.+++|++++..++++ ...+..++|
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv   83 (296)
T 4hgt_A            7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT---KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMV   83 (296)
T ss_dssp             ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC------CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEE
T ss_pred             cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc---cchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEE
Confidence            456789999999999999999997 678999999875322   234588999999999999888887776 456678999


Q ss_pred             eecccCCChhhhcccccc-c---------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHK-I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~-~---------~~~~~aL~yLH~~~i  380 (380)
                      |||+ +|+|.+++..... .         .+++.||+|||+.+|
T Consensus        84 ~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i  126 (296)
T 4hgt_A           84 MELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNF  126 (296)
T ss_dssp             EECC-CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEcc-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999 9999999874322 1         348999999999875

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.32  E-value=3.2e-12  Score=118.09  Aligned_cols=106  Identities=26%  Similarity=0.356  Sum_probs=55.1

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +++.|+|++|.+++..|..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|+
T Consensus       101 ~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  180 (290)
T 1p9a_G          101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ  180 (290)
T ss_dssp             TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECC
Confidence            45555555555555444555555555555555555554444445555555555555555553333334555555555555


Q ss_pred             CCcccccCcccccc---ccccccCCCcccc
Q 016905          157 SNNLTGRIPMQLFS---VATFNFTGTHLIC  183 (380)
Q Consensus       157 ~N~l~g~~p~~~~~---~~~~~~~gN~~lc  183 (380)
                      +|+|+ .+|..+..   +..+.+.|||+.|
T Consensus       181 ~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          181 ENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             SSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            55555 44443332   2334455555544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.31  E-value=2.7e-12  Score=119.13  Aligned_cols=110  Identities=25%  Similarity=0.360  Sum_probs=99.8

Q ss_pred             CEEEEEeCCCCCcc-ccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEEC
Q 016905           77 NVISLTLGSNGFSG-KISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~l~g-~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~l  155 (380)
                      +|+.|+|++|.+++ .+|..+..+++|++|+|++|++++..|..+..+++|++|+|++|++++..+..+..+++|+.||+
T Consensus       151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  230 (306)
T 2z66_A          151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY  230 (306)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred             CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence            89999999999998 68889999999999999999999988999999999999999999999877778999999999999


Q ss_pred             cCCcccccCcccccc----ccccccCCCccccCCC
Q 016905          156 SSNNLTGRIPMQLFS----VATFNFTGTHLICGSS  186 (380)
Q Consensus       156 s~N~l~g~~p~~~~~----~~~~~~~gN~~lc~~~  186 (380)
                      ++|++++..|..+..    +..+++.+|+..|.+.
T Consensus       231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             TTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             CCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            999999998877654    4677899999988653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.31  E-value=4.1e-12  Score=116.15  Aligned_cols=104  Identities=15%  Similarity=0.235  Sum_probs=80.5

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++..+..|.++++|++|+|++|.+++..|..+.++++|++|+|++|++++..+..++.+++|+.|+++
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  132 (276)
T 2z62_A           53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA  132 (276)
T ss_dssp             TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred             CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECc
Confidence            68888888888887777778888888888888888887777888888888888888888887666678888888888888


Q ss_pred             CCcccc-cCccccccc---cccccCCCc
Q 016905          157 SNNLTG-RIPMQLFSV---ATFNFTGTH  180 (380)
Q Consensus       157 ~N~l~g-~~p~~~~~~---~~~~~~gN~  180 (380)
                      +|++++ .+|..+..+   ..+++.+|.
T Consensus       133 ~n~l~~~~l~~~~~~l~~L~~L~Ls~N~  160 (276)
T 2z62_A          133 HNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (276)
T ss_dssp             SSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             CCccceecCchhhccCCCCCEEECCCCC
Confidence            888876 457665443   444555553

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.31  E-value=5.1e-13  Score=128.92  Aligned_cols=105  Identities=20%  Similarity=0.408  Sum_probs=79.2

Q ss_pred             cCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCc------ee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSE------RI  344 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~------~~  344 (380)
                      ..|+..++||+|+||.||+|....+..+|+|++.....     ...+|++++..++||||+++++++...+.      .+
T Consensus        40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~-----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~  114 (394)
T 4e7w_A           40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR-----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLN  114 (394)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT-----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEE
T ss_pred             ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc-----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEE
Confidence            45778899999999999999997766799998853221     22379999999999999999999864332      78


Q ss_pred             EEeecccCCChhhhccc---cc---------ccceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRV---SH---------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~---~~---------~~~~~~~aL~yLH~~~i  380 (380)
                      +||||++++.+....+.   ..         ...+++.||+|||+.||
T Consensus       115 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i  162 (394)
T 4e7w_A          115 LVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIGI  162 (394)
T ss_dssp             EEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            99999987544333221   11         12458999999999875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.30  E-value=4.9e-12  Score=121.55  Aligned_cols=87  Identities=22%  Similarity=0.215  Sum_probs=41.6

Q ss_pred             EEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCcc-ccCCCCCCEEECc
Q 016905           78 VISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPAT-WSQLSNLKHLDLS  156 (380)
Q Consensus        78 l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~-~~~l~~L~~L~ls  156 (380)
                      |+.|+|++|.+++..+..|..+++|++|+|++|.+++..|..++++++|++|+|++|+++ .+|.. |.++++|+.|+++
T Consensus        71 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~  149 (390)
T 3o6n_A           71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMS  149 (390)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECC
Confidence            444444444444444444455555555555555555444444455555555555555554 23322 3445555555555


Q ss_pred             CCcccccCc
Q 016905          157 SNNLTGRIP  165 (380)
Q Consensus       157 ~N~l~g~~p  165 (380)
                      +|++++..|
T Consensus       150 ~n~l~~~~~  158 (390)
T 3o6n_A          150 NNNLERIED  158 (390)
T ss_dssp             SSCCCBCCT
T ss_pred             CCccCccCh
Confidence            555544433

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.30  E-value=6.7e-13  Score=127.41  Aligned_cols=108  Identities=16%  Similarity=0.198  Sum_probs=86.6

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCc--------CCCCccceeeee--
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI--------HKNLLQLIGYCT--  338 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~--------H~Niv~l~g~~~--  338 (380)
                      .++|+..+.||+|+||.||+|.. .+++.||||++..  .....+.+.+|++++.+++        |+||+++++++.  
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~--~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~  113 (397)
T 1wak_A           36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKS--AEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKIS  113 (397)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS--CHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEE
T ss_pred             CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEec--CCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeec
Confidence            36788899999999999999987 5688999999953  2334677899999999986        788999999987  


Q ss_pred             --CCCceeEEeecccCCChhhhccccc--c---------cceeeeeecceeee-cC
Q 016905          339 --TSSERILVYPFMQNLSVAYRLRVSH--K---------IYTKIISLSSLHCF-SL  380 (380)
Q Consensus       339 --~~~~~~lV~Ey~~~GsL~~~L~~~~--~---------~~~~~~aL~yLH~~-~i  380 (380)
                        .....++||||+ +|+|.+++....  .         ..+++.||+|||++ ||
T Consensus       114 ~~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~gi  168 (397)
T 1wak_A          114 GVNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRI  168 (397)
T ss_dssp             ETTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             CCCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhCCE
Confidence              556789999999 567776665432  1         13489999999987 64

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.30  E-value=2.2e-12  Score=136.41  Aligned_cols=99  Identities=21%  Similarity=0.169  Sum_probs=48.9

Q ss_pred             CceeeEecCCCEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccC-ChhhhCCcccCeeeccCccccccCCcccc
Q 016905           67 SWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTL-PDFLGSMTHLQSLNLANNKFSGSIPATWS  145 (380)
Q Consensus        67 ~w~gv~c~~~~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~-p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~  145 (380)
                      +|..|.+-..+++.|+|++|.+++..|..|.++++|++|+|++|.+.+.+ |..|+++++|++|+|++|++++..|..|+
T Consensus        15 ~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~   94 (844)
T 3j0a_A           15 NLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ   94 (844)
T ss_dssp             CSSCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred             CCCCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence            34444432235555555555555555555555555555555555444444 34445555555555555555544454555


Q ss_pred             CCCCCCEEECcCCcccccCc
Q 016905          146 QLSNLKHLDLSSNNLTGRIP  165 (380)
Q Consensus       146 ~l~~L~~L~ls~N~l~g~~p  165 (380)
                      ++++|+.|||++|.+++.+|
T Consensus        95 ~l~~L~~L~Ls~n~l~~~~~  114 (844)
T 3j0a_A           95 GLFHLFELRLYFCGLSDAVL  114 (844)
T ss_dssp             SCSSCCCEECTTCCCSSCCS
T ss_pred             CCcccCEeeCcCCCCCcccc
Confidence            55555555555555544433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.30  E-value=6.1e-12  Score=122.98  Aligned_cols=102  Identities=24%  Similarity=0.286  Sum_probs=89.0

Q ss_pred             CceeeEecCC-----------CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCcc
Q 016905           67 SWSHVTCRNG-----------NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK  135 (380)
Q Consensus        67 ~w~gv~c~~~-----------~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~  135 (380)
                      .|..|.|.+.           +++.|+|++|++++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|+
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~  123 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR  123 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence            4778999864           67899999999999988999999999999999999998888899999999999999999


Q ss_pred             ccccCCccccCCCCCCEEECcCCcccccCcccc
Q 016905          136 FSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQL  168 (380)
Q Consensus       136 l~g~iP~~~~~l~~L~~L~ls~N~l~g~~p~~~  168 (380)
                      |++..|..|..+++|+.|+|++|+++...+..+
T Consensus       124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~  156 (440)
T 3zyj_A          124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF  156 (440)
T ss_dssp             CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT
T ss_pred             CCeeCHhHhhccccCceeeCCCCcccccCHHHh
Confidence            996666689999999999999999986555443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.29  E-value=3.2e-12  Score=114.36  Aligned_cols=103  Identities=15%  Similarity=0.191  Sum_probs=88.1

Q ss_pred             CCEEEEEeCCCCCccccchhHhCCccCCeEEcCCCc-CcccCChhhhCCcccCeeeccC-ccccccCCccccCCCCCCEE
Q 016905           76 GNVISLTLGSNGFSGKISPSITKLKFLASLELQDND-LSGTLPDFLGSMTHLQSLNLAN-NKFSGSIPATWSQLSNLKHL  153 (380)
Q Consensus        76 ~~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~-l~g~~p~~~~~l~~L~~l~Ls~-N~l~g~iP~~~~~l~~L~~L  153 (380)
                      .+++.|+|++|++++..+..|.++++|++|+|++|+ +++..|..|.++++|++|+|++ |++++..|..|.++++|+.|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            479999999999998888899999999999999997 8866667899999999999999 99997777889999999999


Q ss_pred             ECcCCcccccCcc--cccccc---ccccCCC
Q 016905          154 DLSSNNLTGRIPM--QLFSVA---TFNFTGT  179 (380)
Q Consensus       154 ~ls~N~l~g~~p~--~~~~~~---~~~~~gN  179 (380)
                      ++++|++++ +|.  .+.++.   .+++.+|
T Consensus       111 ~l~~n~l~~-lp~~~~l~~L~~L~~L~l~~N  140 (239)
T 2xwt_C          111 GIFNTGLKM-FPDLTKVYSTDIFFILEITDN  140 (239)
T ss_dssp             EEEEECCCS-CCCCTTCCBCCSEEEEEEESC
T ss_pred             eCCCCCCcc-ccccccccccccccEEECCCC
Confidence            999999997 775  222333   5566666

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.29  E-value=5.6e-12  Score=129.85  Aligned_cols=88  Identities=27%  Similarity=0.330  Sum_probs=43.8

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +++.|+|++|.+++..+..|+++++|++|+|++|.+++..|..++++++|++|+|++|++++..|.+|+++++|++|+++
T Consensus        26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  105 (680)
T 1ziw_A           26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM  105 (680)
T ss_dssp             TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECC
Confidence            45555555555555444445555555555555555555555555555555555555555552222234555555555555


Q ss_pred             CCcccccC
Q 016905          157 SNNLTGRI  164 (380)
Q Consensus       157 ~N~l~g~~  164 (380)
                      +|++++..
T Consensus       106 ~n~l~~~~  113 (680)
T 1ziw_A          106 SNSIQKIK  113 (680)
T ss_dssp             SSCCCCCC
T ss_pred             CCccCccC
Confidence            55544333

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.29  E-value=2.6e-12  Score=128.09  Aligned_cols=105  Identities=24%  Similarity=0.271  Sum_probs=89.4

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcc--cCChhhhCCcccCeeeccCccccccCCcc-ccCCCCCCEE
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSG--TLPDFLGSMTHLQSLNLANNKFSGSIPAT-WSQLSNLKHL  153 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~-~~~l~~L~~L  153 (380)
                      +++.|+|++|.+++.+|..++.+++|++|+|++|++++  .+|..++.+++|++|+|++|++++.+|.. +..+++|+.|
T Consensus       325 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L  404 (520)
T 2z7x_B          325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL  404 (520)
T ss_dssp             CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEE
T ss_pred             cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEE
Confidence            78899999999999889999999999999999999987  67788999999999999999999878864 7888899999


Q ss_pred             ECcCCcccccCcccc-ccccccccCCCcc
Q 016905          154 DLSSNNLTGRIPMQL-FSVATFNFTGTHL  181 (380)
Q Consensus       154 ~ls~N~l~g~~p~~~-~~~~~~~~~gN~~  181 (380)
                      ++++|++++.+|..+ .++..+++.+|..
T Consensus       405 ~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l  433 (520)
T 2z7x_B          405 NMSSNILTDTIFRCLPPRIKVLDLHSNKI  433 (520)
T ss_dssp             ECCSSCCCGGGGGSCCTTCCEEECCSSCC
T ss_pred             ECcCCCCCcchhhhhcccCCEEECCCCcc
Confidence            999999988888776 3666667777653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.29  E-value=7.7e-13  Score=139.31  Aligned_cols=103  Identities=26%  Similarity=0.425  Sum_probs=78.3

Q ss_pred             CEEEEEeCCCCCcc-----------------ccchhHh--CCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCcc-c
Q 016905           77 NVISLTLGSNGFSG-----------------KISPSIT--KLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK-F  136 (380)
Q Consensus        77 ~l~~l~L~~n~l~g-----------------~~p~~~~--~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~-l  136 (380)
                      +|+.|+|++|.|+|                 .+|+.++  ++++|++|+|++|++.|.+|..|+++++|+.|+|++|+ |
T Consensus       449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l  528 (876)
T 4ecn_A          449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI  528 (876)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS
T ss_pred             CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc
Confidence            78888888888888                 4888877  88888888888888888888888888888888888887 8


Q ss_pred             cc-cCCccccCCC-------CCCEEECcCCcccccCcc--cccc---ccccccCCCc
Q 016905          137 SG-SIPATWSQLS-------NLKHLDLSSNNLTGRIPM--QLFS---VATFNFTGTH  180 (380)
Q Consensus       137 ~g-~iP~~~~~l~-------~L~~L~ls~N~l~g~~p~--~~~~---~~~~~~~gN~  180 (380)
                      +| .+|..+++++       +|+.|+|++|+++ .+|.  .+..   +..+.+.+|.
T Consensus       529 sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~  584 (876)
T 4ecn_A          529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK  584 (876)
T ss_dssp             CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC
T ss_pred             ccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC
Confidence            88 7777665554       7888888888877 7776  4443   3444455554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.29  E-value=1.7e-12  Score=121.02  Aligned_cols=103  Identities=21%  Similarity=0.334  Sum_probs=79.7

Q ss_pred             CEEEEEeCCCCCccc--cchh--HhCCccCCeEEcCCCcCcccCCh----hhhCCcccCeeeccCccccccCCccccCC-
Q 016905           77 NVISLTLGSNGFSGK--ISPS--ITKLKFLASLELQDNDLSGTLPD----FLGSMTHLQSLNLANNKFSGSIPATWSQL-  147 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~--~p~~--~~~l~~L~~L~Ls~N~l~g~~p~----~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l-  147 (380)
                      +|+.|+|++|.+.+.  ++..  ++.+++|++|+|++|+++ .+|.    .++.+++|++|||++|++++.+|..+..+ 
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  248 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM  248 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence            799999999998774  3322  368889999999999987 3333    35788899999999999998888888777 


Q ss_pred             --CCCCEEECcCCcccccCccccc-cccccccCCCcc
Q 016905          148 --SNLKHLDLSSNNLTGRIPMQLF-SVATFNFTGTHL  181 (380)
Q Consensus       148 --~~L~~L~ls~N~l~g~~p~~~~-~~~~~~~~gN~~  181 (380)
                        ++|+.|+|++|+|+ .+|..+. ++..+++++|..
T Consensus       249 ~~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~l  284 (310)
T 4glp_A          249 WSSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNRL  284 (310)
T ss_dssp             CCTTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCCC
T ss_pred             CcCcCCEEECCCCCCC-chhhhhcCCCCEEECCCCcC
Confidence              58999999999998 6776553 556667777754

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.28  E-value=6.2e-12  Score=126.75  Aligned_cols=101  Identities=22%  Similarity=0.298  Sum_probs=85.9

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +++.|+|++|.+++..|..|.++++|++|+|++|++++..|..|+++++|++|||++|+++ .+|..  .+++|++|||+
T Consensus        53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls  129 (562)
T 3a79_B           53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLS  129 (562)
T ss_dssp             TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECC
T ss_pred             CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECC
Confidence            7899999999999888889999999999999999999888999999999999999999999 78877  88999999999


Q ss_pred             CCcccc-cCccccccc---cccccCCCc
Q 016905          157 SNNLTG-RIPMQLFSV---ATFNFTGTH  180 (380)
Q Consensus       157 ~N~l~g-~~p~~~~~~---~~~~~~gN~  180 (380)
                      +|++++ .+|..+..+   ..+++.+|.
T Consensus       130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~  157 (562)
T 3a79_B          130 FNDFDVLPVCKEFGNLTKLTFLGLSAAK  157 (562)
T ss_dssp             SSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred             CCCccccCchHhhcccCcccEEecCCCc
Confidence            999987 566666543   444555554

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.28  E-value=3.1e-12  Score=126.56  Aligned_cols=107  Identities=18%  Similarity=0.236  Sum_probs=85.5

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCC-CCccceeeeeCCCceeEEe
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHK-NLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~-Niv~l~g~~~~~~~~~lV~  347 (380)
                      .++|+..++||+|+||.||+|+. .+++.||||++....   ..+.+..|++++..++|+ ++..+..++...+..++||
T Consensus         6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~---~~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvm   82 (483)
T 3sv0_A            6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKT---KHPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVM   82 (483)
T ss_dssp             TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTC---SSCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEE
T ss_pred             CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEecccc---ccHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEE
Confidence            35788899999999999999997 679999999885322   234588999999999875 5555666667778889999


Q ss_pred             ecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                      ||+ +|+|.++++....          ..+++.||+|||+++|
T Consensus        83 e~~-g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gI  124 (483)
T 3sv0_A           83 DLL-GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSF  124 (483)
T ss_dssp             ECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             ECC-CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            999 9999999974322          1348999999999875

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.27  E-value=3.3e-12  Score=120.08  Aligned_cols=106  Identities=22%  Similarity=0.214  Sum_probs=85.6

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +++.|+|++|.+++..|..+.++++|+.|+|++|.+++..|..++.+++|+.|+|++|+++ .+|..+..+++|+.|+++
T Consensus       194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~  272 (332)
T 2ft3_A          194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH  272 (332)
T ss_dssp             SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred             CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence            6788888888888888888888899999999999998877778888899999999999988 888888888999999999


Q ss_pred             CCcccccCcccccc---------ccccccCCCcccc
Q 016905          157 SNNLTGRIPMQLFS---------VATFNFTGTHLIC  183 (380)
Q Consensus       157 ~N~l~g~~p~~~~~---------~~~~~~~gN~~lc  183 (380)
                      +|++++..+..+..         +..+.+.+|+..+
T Consensus       273 ~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~  308 (332)
T 2ft3_A          273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY  308 (332)
T ss_dssp             SSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred             CCCCCccChhHccccccccccccccceEeecCcccc
Confidence            99888655444332         3456677777653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.27  E-value=7.5e-12  Score=127.22  Aligned_cols=103  Identities=24%  Similarity=0.255  Sum_probs=89.9

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++..|..|+++++|++|+|++|.|++..|..|+++++|++|+|++|++++..|..|+.+++|+.|+|+
T Consensus       100 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  179 (597)
T 3oja_B          100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS  179 (597)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred             CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence            89999999999999888889999999999999999996555667999999999999999999999999999999999999


Q ss_pred             CCcccccCccccccccccccCCC
Q 016905          157 SNNLTGRIPMQLFSVATFNFTGT  179 (380)
Q Consensus       157 ~N~l~g~~p~~~~~~~~~~~~gN  179 (380)
                      +|.+++..+..+.++..+.+.+|
T Consensus       180 ~N~l~~~~~~~l~~L~~L~l~~n  202 (597)
T 3oja_B          180 SNRLTHVDLSLIPSLFHANVSYN  202 (597)
T ss_dssp             TSCCSBCCGGGCTTCSEEECCSS
T ss_pred             CCCCCCcChhhhhhhhhhhcccC
Confidence            99999865555555544444444

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.27  E-value=1.2e-12  Score=124.76  Aligned_cols=108  Identities=16%  Similarity=0.238  Sum_probs=88.6

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCc-----------CCCCccceeee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI-----------HKNLLQLIGYC  337 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~-----------H~Niv~l~g~~  337 (380)
                      .++|+..+.||+|+||.||+|.. .+++.||||++..  .....+.+.+|++++.+++           ||||+++++++
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~--~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~   95 (373)
T 1q8y_A           18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRG--DKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHF   95 (373)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS--CHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEE
T ss_pred             CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecC--CccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHh
Confidence            35688899999999999999997 6789999999953  2234577889999999886           89999999998


Q ss_pred             eCCC----ceeEEeecccCCChhhhcccccc-----------cceeeeeecceeee-cC
Q 016905          338 TTSS----ERILVYPFMQNLSVAYRLRVSHK-----------IYTKIISLSSLHCF-SL  380 (380)
Q Consensus       338 ~~~~----~~~lV~Ey~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~-~i  380 (380)
                      ...+    ..++||||+ +|+|.+++.....           ..+++.||+|||+. ||
T Consensus        96 ~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~i  153 (373)
T 1q8y_A           96 NHKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGI  153 (373)
T ss_dssp             EEEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             hccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCCE
Confidence            7643    689999999 8999999875322           13489999999987 64

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.27  E-value=4.1e-12  Score=108.31  Aligned_cols=100  Identities=18%  Similarity=0.189  Sum_probs=56.4

Q ss_pred             CEEEEEeCCCCCccccchhHhCCc-cCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEEC
Q 016905           77 NVISLTLGSNGFSGKISPSITKLK-FLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~-~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~l  155 (380)
                      +++.|+|++|.++. +|. +..+. +|++|+|++|.|++.  +.++.+++|++|+|++|++++..|..+..+++|+.|++
T Consensus        20 ~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           20 RDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             SCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            56666666666663 333 33333 666666666666653  45666666666666666666433333466666666666


Q ss_pred             cCCcccccCcc--ccc---cccccccCCCcc
Q 016905          156 SSNNLTGRIPM--QLF---SVATFNFTGTHL  181 (380)
Q Consensus       156 s~N~l~g~~p~--~~~---~~~~~~~~gN~~  181 (380)
                      ++|+++ .+|.  .+.   ++..+++.+|+.
T Consensus        96 ~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i  125 (176)
T 1a9n_A           96 TNNSLV-ELGDLDPLASLKSLTYLCILRNPV  125 (176)
T ss_dssp             CSCCCC-CGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             CCCcCC-cchhhHhhhcCCCCCEEEecCCCC
Confidence            666663 3443  222   334455556554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.27  E-value=5.8e-12  Score=125.58  Aligned_cols=91  Identities=26%  Similarity=0.251  Sum_probs=66.6

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +++.|+|++|.+++..|..|.++++|++|+|++|++++..|..|+++++|++|||++|+++ .||..  .+++|++|||+
T Consensus        22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~   98 (520)
T 2z7x_B           22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLS   98 (520)
T ss_dssp             TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECC
T ss_pred             cccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEecc
Confidence            6777777777777777777777777777777777777777777777777777777777777 56665  67777777777


Q ss_pred             CCcccc-cCcccccc
Q 016905          157 SNNLTG-RIPMQLFS  170 (380)
Q Consensus       157 ~N~l~g-~~p~~~~~  170 (380)
                      +|++++ .+|..+..
T Consensus        99 ~N~l~~~~~p~~~~~  113 (520)
T 2z7x_B           99 FNAFDALPICKEFGN  113 (520)
T ss_dssp             SSCCSSCCCCGGGGG
T ss_pred             CCccccccchhhhcc
Confidence            777776 46655543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.26  E-value=5.5e-12  Score=109.58  Aligned_cols=84  Identities=17%  Similarity=0.290  Sum_probs=41.2

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++..|..++.+++|++|+|++|.+++..|..++.+++|+.|+|++|++.+.+| .+..+++|+.|+++
T Consensus        89 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~  167 (197)
T 4ezg_A           89 NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQ  167 (197)
T ss_dssp             TCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECT
T ss_pred             CCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECC
Confidence            44455555555554444445555555555555555554444445555555555555554222444 34445555555555


Q ss_pred             CCccc
Q 016905          157 SNNLT  161 (380)
Q Consensus       157 ~N~l~  161 (380)
                      +|+++
T Consensus       168 ~n~i~  172 (197)
T 4ezg_A          168 FDGVH  172 (197)
T ss_dssp             TBCCC
T ss_pred             CCCCc
Confidence            55544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.26  E-value=6.2e-12  Score=107.19  Aligned_cols=86  Identities=17%  Similarity=0.200  Sum_probs=77.3

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCc--cccCCCCCCEEE
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPA--TWSQLSNLKHLD  154 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~--~~~~l~~L~~L~  154 (380)
                      +++.|+|++|.+++.  +.++.+++|++|+|++|.|++..|..++.+++|++|+|++|+++ .+|.  .+..+++|+.|+
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence            799999999999986  68999999999999999999765565699999999999999996 7887  899999999999


Q ss_pred             CcCCcccccCcc
Q 016905          155 LSSNNLTGRIPM  166 (380)
Q Consensus       155 ls~N~l~g~~p~  166 (380)
                      +++|.++ .+|.
T Consensus       120 l~~N~i~-~~~~  130 (176)
T 1a9n_A          120 ILRNPVT-NKKH  130 (176)
T ss_dssp             CCSSGGG-GSTT
T ss_pred             ecCCCCC-CcHh
Confidence            9999998 4554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.26  E-value=8.2e-12  Score=128.58  Aligned_cols=90  Identities=18%  Similarity=0.290  Sum_probs=61.6

Q ss_pred             HhCCccCCeEEcCCCcCcccCCh-hhhCCcccCeeeccCccccccCCccccCCCCCCEEECcCCcccccCccc----ccc
Q 016905           96 ITKLKFLASLELQDNDLSGTLPD-FLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQ----LFS  170 (380)
Q Consensus        96 ~~~l~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~~p~~----~~~  170 (380)
                      |.++++|+.|+|++|+++ .+|. .|+++++|+.|||++|++++..|..|..+++|+.|||++|++++..|..    +.+
T Consensus       532 ~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~  610 (680)
T 1ziw_A          532 LKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN  610 (680)
T ss_dssp             TTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTT
T ss_pred             hcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccc
Confidence            455555555666666665 3443 4677777777777777777554555677778888888888887766653    345


Q ss_pred             ccccccCCCccccCCC
Q 016905          171 VATFNFTGTHLICGSS  186 (380)
Q Consensus       171 ~~~~~~~gN~~lc~~~  186 (380)
                      +..+++.+||+.|++.
T Consensus       611 L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          611 LTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CSEEECTTCCCCBCCC
T ss_pred             cCEEEccCCCcccCCc
Confidence            6778889999999754

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.26  E-value=2.3e-12  Score=118.70  Aligned_cols=111  Identities=9%  Similarity=0.033  Sum_probs=83.9

Q ss_pred             HHHHHhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCC-----------------chHHHHHHHHHHHhcCcC
Q 016905          265 ELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSP-----------------GGEAAFQREVHLISVAIH  327 (380)
Q Consensus       265 ~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~-----------------~~~~~f~~e~~~l~~l~H  327 (380)
                      .+......|+..+.||+|+||.||+|...+|+.||||.++.....                 .....|.+|++++.+++ 
T Consensus        84 ~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~-  162 (282)
T 1zar_A           84 RLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ-  162 (282)
T ss_dssp             HHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc-
Confidence            344445556677999999999999999977999999999632111                 13567899999999998 


Q ss_pred             CCCccceeeeeCCCceeEEeecccCCChhhhcccc---cccceeeeeecceeeecC
Q 016905          328 KNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVS---HKIYTKIISLSSLHCFSL  380 (380)
Q Consensus       328 ~Niv~l~g~~~~~~~~~lV~Ey~~~GsL~~~L~~~---~~~~~~~~aL~yLH~~~i  380 (380)
                       | +++.+++.. +..++||||+++|+|.+ +...   ....+++.||+|||+.||
T Consensus       163 -~-~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~~~~~~~i~~qi~~~l~~lH~~gi  214 (282)
T 1zar_A          163 -G-LAVPKVYAW-EGNAVLMELIDAKELYR-VRVENPDEVLDMILEEVAKFYHRGI  214 (282)
T ss_dssp             -T-SSSCCEEEE-ETTEEEEECCCCEEGGG-CCCSCHHHHHHHHHHHHHHHHHTTE
T ss_pred             -C-CCcCeEEec-cceEEEEEecCCCcHHH-cchhhHHHHHHHHHHHHHHHHHCCC
Confidence             5 666665543 56799999999999999 5432   223569999999999875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.25  E-value=5.7e-12  Score=127.03  Aligned_cols=105  Identities=24%  Similarity=0.295  Sum_probs=92.1

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcc--cCChhhhCCcccCeeeccCccccccCCcc-ccCCCCCCEE
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSG--TLPDFLGSMTHLQSLNLANNKFSGSIPAT-WSQLSNLKHL  153 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~-~~~l~~L~~L  153 (380)
                      +++.|+|++|.+++.+|..++++++|++|+|++|++++  .+|..++++++|+.|+|++|++++.+|.. +..+++|+.|
T Consensus       354 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L  433 (562)
T 3a79_B          354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL  433 (562)
T ss_dssp             CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEE
T ss_pred             CceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEE
Confidence            79999999999999999999999999999999999997  45677899999999999999999878764 8889999999


Q ss_pred             ECcCCcccccCcccc-ccccccccCCCcc
Q 016905          154 DLSSNNLTGRIPMQL-FSVATFNFTGTHL  181 (380)
Q Consensus       154 ~ls~N~l~g~~p~~~-~~~~~~~~~gN~~  181 (380)
                      ++++|++++.+|..+ .++..+++.+|..
T Consensus       434 ~l~~n~l~~~~~~~l~~~L~~L~L~~N~l  462 (562)
T 3a79_B          434 NLSSNMLTGSVFRCLPPKVKVLDLHNNRI  462 (562)
T ss_dssp             ECCSSCCCGGGGSSCCTTCSEEECCSSCC
T ss_pred             ECCCCCCCcchhhhhcCcCCEEECCCCcC
Confidence            999999999888877 4677777777754

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.24  E-value=8.3e-12  Score=116.26  Aligned_cols=86  Identities=22%  Similarity=0.151  Sum_probs=78.3

Q ss_pred             CEEEEEeCCCCCccccchhH--hCCccCCeEEcCCCcCcccCC----hhhhCCcccCeeeccCccccccCCccccCCCCC
Q 016905           77 NVISLTLGSNGFSGKISPSI--TKLKFLASLELQDNDLSGTLP----DFLGSMTHLQSLNLANNKFSGSIPATWSQLSNL  150 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~--~~l~~L~~L~Ls~N~l~g~~p----~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L  150 (380)
                      +|+.|+|++|.+++.+|..+  ..+++|+.|+|++|.+++..|    ..+..+++|++|+|++|++++..|..|+.+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            59999999999999999988  899999999999999998777    455679999999999999998888999999999


Q ss_pred             CEEECcCCcccc
Q 016905          151 KHLDLSSNNLTG  162 (380)
Q Consensus       151 ~~L~ls~N~l~g  162 (380)
                      ++|||++|++.+
T Consensus       172 ~~L~Ls~N~l~~  183 (310)
T 4glp_A          172 TSLDLSDNPGLG  183 (310)
T ss_dssp             CEEECCSCTTCH
T ss_pred             CEEECCCCCCcc
Confidence            999999999875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.24  E-value=2e-12  Score=120.58  Aligned_cols=104  Identities=14%  Similarity=0.212  Sum_probs=87.8

Q ss_pred             CEEEEEeCCCCCccccchhHhCC-----ccCCeEEcCCCcCcccCChhhhCCcccCeeeccCcccccc--CCccc--cCC
Q 016905           77 NVISLTLGSNGFSGKISPSITKL-----KFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS--IPATW--SQL  147 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l-----~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~--iP~~~--~~l  147 (380)
                      +|+.|+|++|.+++. |..++.+     ++|++|+|++|++++..|..++++++|++|+|++|+++|.  +|..+  ..+
T Consensus       122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l  200 (312)
T 1wwl_A          122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF  200 (312)
T ss_dssp             CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred             CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence            799999999999988 8888887     9999999999999988889999999999999999999887  34455  899


Q ss_pred             CCCCEEECcCCcccc--cCcccc----ccccccccCCCcc
Q 016905          148 SNLKHLDLSSNNLTG--RIPMQL----FSVATFNFTGTHL  181 (380)
Q Consensus       148 ~~L~~L~ls~N~l~g--~~p~~~----~~~~~~~~~gN~~  181 (380)
                      ++|+.|+|++|++++  .+|..+    .++..+++++|..
T Consensus       201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l  240 (312)
T 1wwl_A          201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL  240 (312)
T ss_dssp             TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred             CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC
Confidence            999999999999983  444332    4667777777754

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.24  E-value=2.5e-12  Score=121.35  Aligned_cols=108  Identities=17%  Similarity=0.242  Sum_probs=87.8

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCC-cEEEEEEecccCCCchHHHHHHHHHHHhcCcCCC------CccceeeeeCCC
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDN-TKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKN------LLQLIGYCTTSS  341 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g-~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~N------iv~l~g~~~~~~  341 (380)
                      .++|+..+.||+|+||.||+|.. .++ +.||||++..  .....+.+.+|++++.+++|++      ++.+.+++...+
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~--~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~   95 (355)
T 2eu9_A           18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRN--VGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHG   95 (355)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECS--CHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETT
T ss_pred             cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcc--cccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCC
Confidence            45788899999999999999998 344 7899999953  2234677889999999998877      889999999999


Q ss_pred             ceeEEeecccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          342 ERILVYPFMQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       342 ~~~lV~Ey~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      ..++||||+ +|++.+++.....           ..+++.||+|||+.+|
T Consensus        96 ~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~i  144 (355)
T 2eu9_A           96 HMCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQL  144 (355)
T ss_dssp             EEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred             eEEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCc
Confidence            999999999 6677777765431           1348999999999875

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.24  E-value=3.6e-12  Score=128.38  Aligned_cols=111  Identities=25%  Similarity=0.387  Sum_probs=72.0

Q ss_pred             CCCCCCCCCCC----Cceee-EecCCCEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeee
Q 016905           56 DWNDHFVSPCF----SWSHV-TCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLN  130 (380)
Q Consensus        56 ~w~~~~~~~c~----~w~gv-~c~~~~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~  130 (380)
                      +|.. +.+||.    .|.|+ .|...+++.|+|++|++++ +|..+.  ++|+.|+|++|+|+ .+|   +.+++|++|+
T Consensus        35 ~W~~-~~~~~~~~~~~~~~l~~C~~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~  106 (571)
T 3cvr_A           35 KWEK-QALPGENRNEAVSLLKECLINQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLD  106 (571)
T ss_dssp             HHHT-TCCTTCCHHHHHHHHHHHHHTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEE
T ss_pred             HHhc-cCCccccccchhhhccccccCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEE
Confidence            4543 246664    48888 7877788888888888886 776553  67777777777777 566   3466777777


Q ss_pred             ccCccccccCCccccCCCCCCEEECcCCcccccCccccccccccccCCC
Q 016905          131 LANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGT  179 (380)
Q Consensus       131 Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~gN  179 (380)
                      |++|+|++ ||. +.+  +|+.|+|++|+|++ +|..+.++..+++.+|
T Consensus       107 Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N  150 (571)
T 3cvr_A          107 ACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPELPALLEYINADNN  150 (571)
T ss_dssp             CCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCCCCTTCCEEECCSS
T ss_pred             ccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCCcCccccEEeCCCC
Confidence            77777775 666 544  66666666666665 4443334444444444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.23  E-value=2.1e-11  Score=117.13  Aligned_cols=104  Identities=24%  Similarity=0.247  Sum_probs=90.2

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++..|..|+++++|++|+|++|.++...+..++++++|++|+|++|++++..|..|..+++|+.|+++
T Consensus        94 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  173 (390)
T 3o6n_A           94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS  173 (390)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred             CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence            89999999999999888889999999999999999994444446999999999999999998888899999999999999


Q ss_pred             CCcccccCccccccccccccCCCc
Q 016905          157 SNNLTGRIPMQLFSVATFNFTGTH  180 (380)
Q Consensus       157 ~N~l~g~~p~~~~~~~~~~~~gN~  180 (380)
                      +|++++.-...+.++..+.+.+|.
T Consensus       174 ~n~l~~~~~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          174 SNRLTHVDLSLIPSLFHANVSYNL  197 (390)
T ss_dssp             SSCCSBCCGGGCTTCSEEECCSSC
T ss_pred             CCcCCccccccccccceeeccccc
Confidence            999997655556666666666654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.20  E-value=1.5e-11  Score=114.83  Aligned_cols=102  Identities=24%  Similarity=0.172  Sum_probs=79.7

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhh-CCcccCeeeccCccccccCCccccCCCCCCEEEC
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLG-SMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~-~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~l  155 (380)
                      +++.|+|++|.+++..|..++.+++|++|+|++|.+++..|..+. .+++|++|+|++|++++. |. ...+++|+.|||
T Consensus       121 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~L  198 (317)
T 3o53_A          121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDL  198 (317)
T ss_dssp             SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEEC
T ss_pred             CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEEC
Confidence            688999999999988888888899999999999999987777764 788899999999998855 43 345888899999


Q ss_pred             cCCcccccCccccc---cccccccCCCcc
Q 016905          156 SSNNLTGRIPMQLF---SVATFNFTGTHL  181 (380)
Q Consensus       156 s~N~l~g~~p~~~~---~~~~~~~~gN~~  181 (380)
                      ++|++++..| .+.   ++..+++.+|..
T Consensus       199 s~N~l~~l~~-~~~~l~~L~~L~L~~N~l  226 (317)
T 3o53_A          199 SSNKLAFMGP-EFQSAAGVTWISLRNNKL  226 (317)
T ss_dssp             CSSCCCEECG-GGGGGTTCSEEECTTSCC
T ss_pred             CCCcCCcchh-hhcccCcccEEECcCCcc
Confidence            9998886443 343   345666777654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.20  E-value=3.1e-11  Score=121.43  Aligned_cols=104  Identities=15%  Similarity=0.235  Sum_probs=62.4

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++..|..|+++++|++|+|++|.+++..|..|+.+++|++|+|++|++++..+..++++++|++|+++
T Consensus        53 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  132 (570)
T 2z63_A           53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA  132 (570)
T ss_dssp             SCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECC
T ss_pred             CceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecC
Confidence            56666666666665555556666666666666666665555666666666666666666664433356666666666666


Q ss_pred             CCcccc-cCcccccc---ccccccCCCc
Q 016905          157 SNNLTG-RIPMQLFS---VATFNFTGTH  180 (380)
Q Consensus       157 ~N~l~g-~~p~~~~~---~~~~~~~gN~  180 (380)
                      +|.+++ .+|..+..   +..+++.+|.
T Consensus       133 ~n~l~~~~lp~~~~~l~~L~~L~l~~n~  160 (570)
T 2z63_A          133 HNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (570)
T ss_dssp             SSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred             CCccceecChhhhcccCCCCEEeCcCCc
Confidence            666665 45655443   3444555553

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.20  E-value=1.1e-11  Score=124.17  Aligned_cols=89  Identities=26%  Similarity=0.389  Sum_probs=67.2

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccc-cCCccccCCCCCCEEEC
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSG-SIPATWSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g-~iP~~~~~l~~L~~L~l  155 (380)
                      +|+.|+|++|++++..|..|+++++|++|+|++|.+++..|..|+++++|++|+|++|++++ .+|..++++++|+.|++
T Consensus        51 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L  130 (549)
T 2z81_A           51 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI  130 (549)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEE
T ss_pred             cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEEC
Confidence            67778888888877777777778888888888888877666667778888888888887776 45667777777777777


Q ss_pred             cCCcccccCc
Q 016905          156 SSNNLTGRIP  165 (380)
Q Consensus       156 s~N~l~g~~p  165 (380)
                      ++|.+.+.+|
T Consensus       131 ~~n~~~~~~~  140 (549)
T 2z81_A          131 GNVETFSEIR  140 (549)
T ss_dssp             EESSSCCEEC
T ss_pred             CCCccccccC
Confidence            7777555555

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.17  E-value=4.9e-12  Score=127.70  Aligned_cols=102  Identities=10%  Similarity=-0.013  Sum_probs=76.1

Q ss_pred             cccCCCeeEEEEEe-CCCcEEEEEEecccCC---------CchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeEEe
Q 016905          279 IGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS---------PGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       279 lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---------~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      .+.|..|.++.+.- -.|+.+|||.+.....         +...++|.+|+++|.++ .|+||+++++++.+++..||||
T Consensus       242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM  321 (569)
T 4azs_A          242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM  321 (569)
T ss_dssp             -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred             cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence            45555555554332 2588899999963211         12346799999999999 7999999999999999999999


Q ss_pred             ecccCCChhhhccccccc------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~------~~~~~aL~yLH~~~i  380 (380)
                      ||++||+|.++|......      .+++.||+|+|++||
T Consensus       322 Eyv~G~~L~d~i~~~~~l~~~~I~~QIl~AL~ylH~~GI  360 (569)
T 4azs_A          322 EKLPGRLLSDMLAAGEEIDREKILGSLLRSLAALEKQGF  360 (569)
T ss_dssp             ECCCSEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ecCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHCCc
Confidence            999999999999865443      459999999999987

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.16  E-value=1.3e-11  Score=118.42  Aligned_cols=106  Identities=22%  Similarity=0.251  Sum_probs=86.3

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCc-CC-----CCccceeeeeCCC
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI-HK-----NLLQLIGYCTTSS  341 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~-H~-----Niv~l~g~~~~~~  341 (380)
                      ..++|+..+.||+|+||.||+|.. .+++.||||++..  .....+++..|++++..++ |+     +++++.+++...+
T Consensus        52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~--~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~  129 (382)
T 2vx3_A           52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKN--KKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRN  129 (382)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECS--SHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETT
T ss_pred             eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEec--cHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCC
Confidence            357899999999999999999998 4688999999953  2233567788999988885 55     3999999999999


Q ss_pred             ceeEEeecccCCChhhhcccccc-----------cceeeeeecceee
Q 016905          342 ERILVYPFMQNLSVAYRLRVSHK-----------IYTKIISLSSLHC  377 (380)
Q Consensus       342 ~~~lV~Ey~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~  377 (380)
                      ..++||||++ |+|.+++.....           ..+++.||+|||+
T Consensus       130 ~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~  175 (382)
T 2vx3_A          130 HLCLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLAT  175 (382)
T ss_dssp             EEEEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTS
T ss_pred             ceEEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            9999999996 599999975431           1348899999994

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.14  E-value=2.5e-11  Score=120.28  Aligned_cols=102  Identities=25%  Similarity=0.260  Sum_probs=69.6

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCc--------------
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPA--------------  142 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~--------------  142 (380)
                      +|+.|+|++|.+++..|..|+.+++|++|+|++|.+++.+|  ++.+++|++|||++|+|++..|.              
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~  112 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS  112 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCC
Confidence            68888888888888778888888888888888888887666  78888888888888887743321              


Q ss_pred             --cccCCCCCCEEECcCCcccccCcccccc---ccccccCCCc
Q 016905          143 --TWSQLSNLKHLDLSSNNLTGRIPMQLFS---VATFNFTGTH  180 (380)
Q Consensus       143 --~~~~l~~L~~L~ls~N~l~g~~p~~~~~---~~~~~~~gN~  180 (380)
                        ....+++|+.|+|++|.+++..|..+..   +..+++++|.
T Consensus       113 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  155 (487)
T 3oja_A          113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE  155 (487)
T ss_dssp             CEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC
T ss_pred             CCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC
Confidence              0012355666666666666655544432   3444555553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.14  E-value=4.2e-11  Score=113.47  Aligned_cols=103  Identities=23%  Similarity=0.321  Sum_probs=86.3

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCc--cccCCCCCCEEE
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPA--TWSQLSNLKHLD  154 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~--~~~~l~~L~~L~  154 (380)
                      +|+.|+|++|.+++..|..|.++++|++|+|++|++++..+..++++++|++|+|++|+++ .+|.  .+..+++|+.|+
T Consensus        77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~  155 (353)
T 2z80_A           77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILR  155 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEE
T ss_pred             CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEE
Confidence            8999999999999988899999999999999999999655555999999999999999999 5665  799999999999


Q ss_pred             CcCCc-ccccCccccc---cccccccCCCc
Q 016905          155 LSSNN-LTGRIPMQLF---SVATFNFTGTH  180 (380)
Q Consensus       155 ls~N~-l~g~~p~~~~---~~~~~~~~gN~  180 (380)
                      +++|+ +++..|..+.   ++..+++.+|.
T Consensus       156 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          156 VGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             EEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             CCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            99995 6655455544   34555666664

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.12  E-value=8.5e-11  Score=110.83  Aligned_cols=99  Identities=26%  Similarity=0.379  Sum_probs=65.0

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +++.|+|++|.+++..+  +..+++|++|+|++|.+++ + +.+..+++|+.|+|++|++++ +| .+..+++|+.|+++
T Consensus       222 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~L~  295 (347)
T 4fmz_A          222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-IS-VLNNLSQLNSLFLN  295 (347)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECC
T ss_pred             cCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-Ch-hhcCCCCCCEEECc
Confidence            67777777777775443  6777777777777777765 2 346677777777777777774 33 46667777777777


Q ss_pred             CCcccccCccccc---cccccccCCCcc
Q 016905          157 SNNLTGRIPMQLF---SVATFNFTGTHL  181 (380)
Q Consensus       157 ~N~l~g~~p~~~~---~~~~~~~~gN~~  181 (380)
                      +|++++..|..+.   ++..+++.+|+.
T Consensus       296 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l  323 (347)
T 4fmz_A          296 NNQLGNEDMEVIGGLTNLTTLFLSQNHI  323 (347)
T ss_dssp             SSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred             CCcCCCcChhHhhccccCCEEEccCCcc
Confidence            7777766665443   334555666653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.12  E-value=9.4e-11  Score=104.76  Aligned_cols=102  Identities=20%  Similarity=0.174  Sum_probs=71.7

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCC---eEEcCCC-cCcccCChhhhCCcccC-eeeccCccccccCCccccCCCCCC
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLA---SLELQDN-DLSGTLPDFLGSMTHLQ-SLNLANNKFSGSIPATWSQLSNLK  151 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~---~L~Ls~N-~l~g~~p~~~~~l~~L~-~l~Ls~N~l~g~iP~~~~~l~~L~  151 (380)
                      +|+.|+|++|.+++ +|. +..+++|+   .|+|++| ++++..|..|..+++|+ .|+|++|+++ .+|......++|+
T Consensus       106 ~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~  182 (239)
T 2xwt_C          106 LLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLD  182 (239)
T ss_dssp             TCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEE
T ss_pred             CCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCC
Confidence            67888888888876 665 77777777   8888888 78766666678888888 8888888887 6666544447788


Q ss_pred             EEECcCCc-ccccCcccc----ccccccccCCCcc
Q 016905          152 HLDLSSNN-LTGRIPMQL----FSVATFNFTGTHL  181 (380)
Q Consensus       152 ~L~ls~N~-l~g~~p~~~----~~~~~~~~~gN~~  181 (380)
                      .|++++|+ +++..|..+    .++..+++.+|..
T Consensus       183 ~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l  217 (239)
T 2xwt_C          183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV  217 (239)
T ss_dssp             EEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC
T ss_pred             EEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc
Confidence            88888884 774444433    3344555666553

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.12  E-value=3.7e-11  Score=112.26  Aligned_cols=98  Identities=23%  Similarity=0.247  Sum_probs=77.8

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++..|..|.++++|++|+|++|.+++..|  +..+++|++|+|++|++++. |    ..++|+.|+++
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~----~~~~L~~L~l~  107 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAA  107 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-E----ECTTCCEEECC
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-c----CCCCcCEEECC
Confidence            68889999999998888889999999999999999987665  88899999999999998843 3    23678888888


Q ss_pred             CCcccccCccccccccccccCCCcc
Q 016905          157 SNNLTGRIPMQLFSVATFNFTGTHL  181 (380)
Q Consensus       157 ~N~l~g~~p~~~~~~~~~~~~gN~~  181 (380)
                      +|++++..+..+.++..+++.+|..
T Consensus       108 ~n~l~~~~~~~~~~L~~L~l~~N~l  132 (317)
T 3o53_A          108 NNNISRVSCSRGQGKKNIYLANNKI  132 (317)
T ss_dssp             SSCCSEEEECCCSSCEEEECCSSCC
T ss_pred             CCccCCcCccccCCCCEEECCCCCC
Confidence            8887776666666666666666643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.11  E-value=4.3e-11  Score=113.41  Aligned_cols=101  Identities=17%  Similarity=0.208  Sum_probs=86.6

Q ss_pred             CceeeEecCC-----------CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCCh-hhhCCcccCe-eeccC
Q 016905           67 SWSHVTCRNG-----------NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPD-FLGSMTHLQS-LNLAN  133 (380)
Q Consensus        67 ~w~gv~c~~~-----------~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~-l~Ls~  133 (380)
                      .|..|.|++.           +++.|+|++|+|+..-+..|.++++|++|+|++|++.+.+|. .|.++++|+. ++++.
T Consensus        10 ~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           10 SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             ETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             eCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            7888999853           689999999999965556799999999999999999888875 5788998875 67788


Q ss_pred             ccccccCCccccCCCCCCEEECcCCcccccCccc
Q 016905          134 NKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQ  167 (380)
Q Consensus       134 N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~~p~~  167 (380)
                      |++++..|..|..+++|+.|++++|++++..+..
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~  123 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH  123 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCT
T ss_pred             CcccccCchhhhhccccccccccccccccCCchh
Confidence            9999888889999999999999999998655533

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.09  E-value=1.2e-12  Score=113.98  Aligned_cols=101  Identities=23%  Similarity=0.289  Sum_probs=68.5

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++ +| .+.++++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++ +| .+..+++|+.|+++
T Consensus        49 ~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~  123 (198)
T 1ds9_A           49 ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMS  123 (198)
T ss_dssp             TCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEES
T ss_pred             CCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECC
Confidence            67777777777776 56 7777777777777777777 677777777777777777777774 55 57777777777777


Q ss_pred             CCcccccCc-c---ccccccccccCCCccc
Q 016905          157 SNNLTGRIP-M---QLFSVATFNFTGTHLI  182 (380)
Q Consensus       157 ~N~l~g~~p-~---~~~~~~~~~~~gN~~l  182 (380)
                      +|++++..+ .   .+.++..+.+.+|+..
T Consensus       124 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          124 NNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             CCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            777764221 1   2233455556666543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.05  E-value=2.3e-10  Score=115.17  Aligned_cols=73  Identities=27%  Similarity=0.413  Sum_probs=34.2

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.|+ .+|   ..+++|+.|+|++|+|++ +|. +++  +|+.|+|++|+|++ ||.   .+++|+.|+|+
T Consensus        81 ~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls  148 (571)
T 3cvr_A           81 QITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINAD  148 (571)
T ss_dssp             TCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECC
T ss_pred             CCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCC
Confidence            4555555555555 344   334455555555555554 444 333  44444444444443 443   33444444444


Q ss_pred             CCccc
Q 016905          157 SNNLT  161 (380)
Q Consensus       157 ~N~l~  161 (380)
                      +|+|+
T Consensus       149 ~N~l~  153 (571)
T 3cvr_A          149 NNQLT  153 (571)
T ss_dssp             SSCCS
T ss_pred             CCccC
Confidence            44444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.04  E-value=2.2e-10  Score=106.60  Aligned_cols=99  Identities=24%  Similarity=0.398  Sum_probs=78.5

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++. |+ +..+++|+.|+|++|.+++..|  ++.+++|+.|+|++|++++ +|. +..+++|+.|+++
T Consensus       108 ~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~  181 (308)
T 1h6u_A          108 SIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKAD  181 (308)
T ss_dssp             TCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECC
T ss_pred             CCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECC
Confidence            789999999999874 43 8999999999999999986544  8899999999999999995 444 8899999999999


Q ss_pred             CCcccccCc-cccccccccccCCCcc
Q 016905          157 SNNLTGRIP-MQLFSVATFNFTGTHL  181 (380)
Q Consensus       157 ~N~l~g~~p-~~~~~~~~~~~~gN~~  181 (380)
                      +|++++..| ..+.++..+++.+|..
T Consensus       182 ~n~l~~~~~l~~l~~L~~L~L~~N~l  207 (308)
T 1h6u_A          182 DNKISDISPLASLPNLIEVHLKNNQI  207 (308)
T ss_dssp             SSCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred             CCccCcChhhcCCCCCCEEEccCCcc
Confidence            999986443 1233455666677654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.04  E-value=3.6e-10  Score=104.31  Aligned_cols=98  Identities=31%  Similarity=0.425  Sum_probs=72.4

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++ + +.+..+++|+.|+|++|++++.  +.+..+++|+.|+|++|++++.  ..+..+++|+.|+++
T Consensus        91 ~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~  164 (291)
T 1h6t_A           91 NLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE  164 (291)
T ss_dssp             TCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred             CCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEcc
Confidence            78888888888886 3 3488888888888888888863  4578888888888888888854  567888888888888


Q ss_pred             CCcccccCc-cccccccccccCCCc
Q 016905          157 SNNLTGRIP-MQLFSVATFNFTGTH  180 (380)
Q Consensus       157 ~N~l~g~~p-~~~~~~~~~~~~gN~  180 (380)
                      +|++++..| ..+.++..+++.+|.
T Consensus       165 ~N~l~~~~~l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          165 DNQISDIVPLAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             SSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred             CCccccchhhcCCCccCEEECCCCc
Confidence            888876544 112334455566664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.03  E-value=3.5e-10  Score=111.06  Aligned_cols=95  Identities=20%  Similarity=0.334  Sum_probs=69.2

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +++.|+|++|.+++ +| +|+++++|++|++++|++++ +|..+   ++|++|+|++|++++ +| .++++++|+.|+++
T Consensus       132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD  203 (454)
T ss_dssp             TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred             CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence            67778888888876 66 58888888888888888875 66543   478888888888885 66 58888888888888


Q ss_pred             CCcccccCccccccccccccCCCc
Q 016905          157 SNNLTGRIPMQLFSVATFNFTGTH  180 (380)
Q Consensus       157 ~N~l~g~~p~~~~~~~~~~~~gN~  180 (380)
                      +|++++ +|....++..+.+.+|.
T Consensus       204 ~N~l~~-l~~~~~~L~~L~l~~n~  226 (454)
T 1jl5_A          204 NNSLKK-LPDLPLSLESIVAGNNI  226 (454)
T ss_dssp             SSCCSS-CCCCCTTCCEEECCSSC
T ss_pred             CCcCCc-CCCCcCcccEEECcCCc
Confidence            888886 55444455555555553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.02  E-value=5.5e-11  Score=114.04  Aligned_cols=104  Identities=20%  Similarity=0.356  Sum_probs=68.0

Q ss_pred             CEEEEEeCCCCCc-cccc---hhHhCCccCCeEEcCCCcCc--c---cCChhhhCCcccCeeeccCcccc----ccCCcc
Q 016905           77 NVISLTLGSNGFS-GKIS---PSITKLKFLASLELQDNDLS--G---TLPDFLGSMTHLQSLNLANNKFS----GSIPAT  143 (380)
Q Consensus        77 ~l~~l~L~~n~l~-g~~p---~~~~~l~~L~~L~Ls~N~l~--g---~~p~~~~~l~~L~~l~Ls~N~l~----g~iP~~  143 (380)
                      +|+.|+|++|+++ +.+|   ..+..+++|+.|+|++|+++  |   .+|..+..+++|++|+|++|+++    +.+|..
T Consensus       160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~  239 (386)
T 2ca6_A          160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA  239 (386)
T ss_dssp             CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred             CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence            6777777777776 4455   45666777777777777776  3   34446677777777777777775    567777


Q ss_pred             ccCCCCCCEEECcCCccccc----Cccc-----cccccccccCCCc
Q 016905          144 WSQLSNLKHLDLSSNNLTGR----IPMQ-----LFSVATFNFTGTH  180 (380)
Q Consensus       144 ~~~l~~L~~L~ls~N~l~g~----~p~~-----~~~~~~~~~~gN~  180 (380)
                      +..+++|+.|+|++|.+++.    +|..     ..++..+++.+|.
T Consensus       240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE  285 (386)
T ss_dssp             GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence            77777777777777777654    3433     2334555555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.02  E-value=6.3e-10  Score=102.63  Aligned_cols=98  Identities=29%  Similarity=0.397  Sum_probs=81.3

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++..+  +.++++|+.|+|++|.+++ +| .++.+++|++|+|++|++++ + +.+..+++|+.|+++
T Consensus        69 ~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~  142 (291)
T 1h6t_A           69 NVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLG  142 (291)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECC
T ss_pred             CCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEcc
Confidence            89999999999997655  9999999999999999986 44 49999999999999999996 4 468999999999999


Q ss_pred             CCcccccCcc--ccccccccccCCCcc
Q 016905          157 SNNLTGRIPM--QLFSVATFNFTGTHL  181 (380)
Q Consensus       157 ~N~l~g~~p~--~~~~~~~~~~~gN~~  181 (380)
                      +|++++. +.  .+.++..+++++|..
T Consensus       143 ~n~l~~~-~~l~~l~~L~~L~L~~N~l  168 (291)
T 1h6t_A          143 NNKITDI-TVLSRLTKLDTLSLEDNQI  168 (291)
T ss_dssp             SSCCCCC-GGGGGCTTCSEEECCSSCC
T ss_pred             CCcCCcc-hhhccCCCCCEEEccCCcc
Confidence            9999864 31  233456666777643

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.02  E-value=7.7e-12  Score=108.74  Aligned_cols=99  Identities=20%  Similarity=0.315  Sum_probs=84.1

Q ss_pred             CEEEEEeCCCCCccccch------hHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCC
Q 016905           77 NVISLTLGSNGFSGKISP------SITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNL  150 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~------~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L  150 (380)
                      +++.++|+.+.++|.+|.      .+..+++|++|+|++|.+++ +| .++.+++|+.|+|++|+++ .+|..+..+++|
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L   95 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL   95 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence            566677778888888776      99999999999999999997 88 8999999999999999999 899988888999


Q ss_pred             CEEECcCCcccccCccccc---cccccccCCCc
Q 016905          151 KHLDLSSNNLTGRIPMQLF---SVATFNFTGTH  180 (380)
Q Consensus       151 ~~L~ls~N~l~g~~p~~~~---~~~~~~~~gN~  180 (380)
                      +.|++++|++++ +| .+.   ++..+++.+|.
T Consensus        96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~  126 (198)
T 1ds9_A           96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNK  126 (198)
T ss_dssp             SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEE
T ss_pred             CEEECcCCcCCc-CC-ccccCCCCCEEECCCCc
Confidence            999999999997 55 333   34556666664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.01  E-value=2e-10  Score=112.89  Aligned_cols=98  Identities=17%  Similarity=0.205  Sum_probs=65.9

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCC-------C
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLS-------N  149 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~-------~  149 (380)
                      +++.|+|++|.+++.   .++.+++|+.|+|++|++++ +|  ++.+++|+.|+|++|+++|..+..+.++.       +
T Consensus       192 ~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~  265 (457)
T 3bz5_A          192 LLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTD  265 (457)
T ss_dssp             TCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCC
T ss_pred             CCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCC
Confidence            677788888888765   37777888888888888876 56  77778888888888888766555555544       4


Q ss_pred             CCEEECcCCcccccCccc-cccccccccCCCc
Q 016905          150 LKHLDLSSNNLTGRIPMQ-LFSVATFNFTGTH  180 (380)
Q Consensus       150 L~~L~ls~N~l~g~~p~~-~~~~~~~~~~gN~  180 (380)
                      |+.||+++|.+.|.+|.. +.++..+++.+|+
T Consensus       266 L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~  297 (457)
T 3bz5_A          266 LLEIDLTHNTQLIYFQAEGCRKIKELDVTHNT  297 (457)
T ss_dssp             CSCCCCTTCTTCCEEECTTCTTCCCCCCTTCT
T ss_pred             CCEEECCCCccCCcccccccccCCEEECCCCc
Confidence            556666666666666632 2344555555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.01  E-value=6.2e-10  Score=101.16  Aligned_cols=97  Identities=26%  Similarity=0.351  Sum_probs=70.5

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++..|  +.++++|+.|+|++|++++ +|....  ++|+.|+|++|++++ +| .+..+++|+.|||+
T Consensus        64 ~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~~--~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls  136 (263)
T 1xeu_A           64 NLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIPS--ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIR  136 (263)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCCC--SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECT
T ss_pred             CCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcccc--CcccEEEccCCccCC-Ch-hhcCcccccEEECC
Confidence            78889999998886554  8888899999999998885 554332  788888888888885 44 57888888888888


Q ss_pred             CCcccccCcc--ccccccccccCCCcc
Q 016905          157 SNNLTGRIPM--QLFSVATFNFTGTHL  181 (380)
Q Consensus       157 ~N~l~g~~p~--~~~~~~~~~~~gN~~  181 (380)
                      +|++++. |.  .+.++..+++.+|..
T Consensus       137 ~N~i~~~-~~l~~l~~L~~L~L~~N~i  162 (263)
T 1xeu_A          137 NNKLKSI-VMLGFLSKLEVLDLHGNEI  162 (263)
T ss_dssp             TSCCCBC-GGGGGCTTCCEEECTTSCC
T ss_pred             CCcCCCC-hHHccCCCCCEEECCCCcC
Confidence            8888753 31  223345556666653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.00  E-value=6.5e-10  Score=103.38  Aligned_cols=99  Identities=21%  Similarity=0.393  Sum_probs=81.7

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++.  +.+..+++|+.|+|++|++++ +|. +..+++|+.|+|++|++++..|  +..+++|+.|+++
T Consensus        86 ~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~  159 (308)
T 1h6u_A           86 KITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIG  159 (308)
T ss_dssp             SCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECC
T ss_pred             CCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEcc
Confidence            899999999999974  479999999999999999996 454 9999999999999999996544  8999999999999


Q ss_pred             CCcccccCc-cccccccccccCCCcc
Q 016905          157 SNNLTGRIP-MQLFSVATFNFTGTHL  181 (380)
Q Consensus       157 ~N~l~g~~p-~~~~~~~~~~~~gN~~  181 (380)
                      +|.+++..+ ..+.++..+++.+|..
T Consensus       160 ~n~l~~~~~l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          160 NAQVSDLTPLANLSKLTTLKADDNKI  185 (308)
T ss_dssp             SSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred             CCcCCCChhhcCCCCCCEEECCCCcc
Confidence            999996433 1233455666777643

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.00  E-value=6.5e-10  Score=112.89  Aligned_cols=98  Identities=28%  Similarity=0.416  Sum_probs=57.4

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++.  +.+..+++|+.|+|++|.|++.  ..++.+++|+.|+|++|+|++..|  +..+++|+.|+|+
T Consensus       110 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls  183 (605)
T 1m9s_A          110 KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS  183 (605)
T ss_dssp             TCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             CCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECc
Confidence            455556666655542  3456666666666666666643  456666666677777777665555  6666777777777


Q ss_pred             CCcccccCcc--ccccccccccCCCcc
Q 016905          157 SNNLTGRIPM--QLFSVATFNFTGTHL  181 (380)
Q Consensus       157 ~N~l~g~~p~--~~~~~~~~~~~gN~~  181 (380)
                      +|+|++. |.  .+.++..+.+.+|+.
T Consensus       184 ~N~i~~l-~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          184 KNHISDL-RALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             SSCCCBC-GGGTTCTTCSEEECCSEEE
T ss_pred             CCCCCCC-hHHccCCCCCEEEccCCcC
Confidence            7766652 31  122334455555543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.99  E-value=1.7e-10  Score=109.76  Aligned_cols=86  Identities=26%  Similarity=0.284  Sum_probs=38.8

Q ss_pred             EEEEEeCCCCCccccc----hhHhCCc-cCCeEEcCCCcCcccCChhhhCC-----cccCeeeccCccccccCCccccC-
Q 016905           78 VISLTLGSNGFSGKIS----PSITKLK-FLASLELQDNDLSGTLPDFLGSM-----THLQSLNLANNKFSGSIPATWSQ-  146 (380)
Q Consensus        78 l~~l~L~~n~l~g~~p----~~~~~l~-~L~~L~Ls~N~l~g~~p~~~~~l-----~~L~~l~Ls~N~l~g~iP~~~~~-  146 (380)
                      |+.|+|++|.+++..+    ..+..++ +|++|+|++|.+++..+..+..+     ++|++|+|++|++++..|..+.. 
T Consensus        24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  103 (362)
T 3goz_A           24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT  103 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred             ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence            4444444444444433    3344444 44445554444444444444443     44444444444444444332222 


Q ss_pred             ---C-CCCCEEECcCCccccc
Q 016905          147 ---L-SNLKHLDLSSNNLTGR  163 (380)
Q Consensus       147 ---l-~~L~~L~ls~N~l~g~  163 (380)
                         + ++|+.|||++|++++.
T Consensus       104 l~~~~~~L~~L~Ls~N~l~~~  124 (362)
T 3goz_A          104 LAAIPFTITVLDLGWNDFSSK  124 (362)
T ss_dssp             HHTSCTTCCEEECCSSCGGGS
T ss_pred             HHhCCCCccEEECcCCcCCcH
Confidence               2 4444444444444433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.99  E-value=7.2e-10  Score=108.90  Aligned_cols=86  Identities=23%  Similarity=0.274  Sum_probs=57.4

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +++.|+|++|.+++ +|  ++.+++|+.|+|++|++++.   .++.+++|+.|+|++|++++ +|  ++.+++|+.|+++
T Consensus       171 ~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~  241 (457)
T 3bz5_A          171 QLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCS  241 (457)
T ss_dssp             TCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECC
T ss_pred             cCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEee
Confidence            56666666666665 33  66666677777777776653   26677777777777777775 66  6777777777777


Q ss_pred             CCcccccCccccccc
Q 016905          157 SNNLTGRIPMQLFSV  171 (380)
Q Consensus       157 ~N~l~g~~p~~~~~~  171 (380)
                      +|++++..+..+.++
T Consensus       242 ~N~l~~~~~~~l~~L  256 (457)
T 3bz5_A          242 VNPLTELDVSTLSKL  256 (457)
T ss_dssp             SSCCSCCCCTTCTTC
T ss_pred             CCcCCCcCHHHCCCC
Confidence            777776555444444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.98  E-value=4.3e-10  Score=105.97  Aligned_cols=101  Identities=27%  Similarity=0.366  Sum_probs=88.1

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +++.|+|++|.+++.  +.+..+++|+.|+|++|.+++.  +.+..+++|+.|+|++|++++..|..+..+++|+.|+++
T Consensus       244 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  319 (347)
T 4fmz_A          244 QLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS  319 (347)
T ss_dssp             TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred             CCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence            899999999999974  5799999999999999999964  458999999999999999999999999999999999999


Q ss_pred             CCcccccCc-cccccccccccCCCcc
Q 016905          157 SNNLTGRIP-MQLFSVATFNFTGTHL  181 (380)
Q Consensus       157 ~N~l~g~~p-~~~~~~~~~~~~gN~~  181 (380)
                      +|++++..| ..+.++..+++.+|+.
T Consensus       320 ~n~l~~~~~~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          320 QNHITDIRPLASLSKMDSADFANQVI  345 (347)
T ss_dssp             SSSCCCCGGGGGCTTCSEESSSCC--
T ss_pred             CCccccccChhhhhccceeehhhhcc
Confidence            999998777 3455667778888763

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.98  E-value=7.3e-11  Score=110.68  Aligned_cols=102  Identities=19%  Similarity=0.207  Sum_probs=68.9

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCccc-CChhhhCCcccCeeeccCccccccCCccccCCCCCCEEEC
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGT-LPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~-~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~l  155 (380)
                      +++.|+|++|.+++..+. +..+++|++|+|++|.+++. +|..+..+++|++|+|++|++++.+|..++.+++|+.|++
T Consensus        71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            567777777777766554 45677777777777777765 7777777777777777777777777777777777777777


Q ss_pred             cCC-ccccc-Cccc---cccccccccCCC
Q 016905          156 SSN-NLTGR-IPMQ---LFSVATFNFTGT  179 (380)
Q Consensus       156 s~N-~l~g~-~p~~---~~~~~~~~~~gN  179 (380)
                      ++| .+++. +|..   +.++..+++.+|
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence            777 56642 4432   233445555555

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.98  E-value=8e-10  Score=108.71  Aligned_cols=80  Identities=30%  Similarity=0.441  Sum_probs=44.7

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++..+  +..+++|+.|+|++|++++..|  ++.+++|+.|+|++|++++..|  +..+++|+.|+++
T Consensus       266 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~  339 (466)
T 1o6v_A          266 KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY  339 (466)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECC
T ss_pred             CCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECC
Confidence            56666666666665433  5556666666666666654333  5555556666666665555444  4455555555555


Q ss_pred             CCcccc
Q 016905          157 SNNLTG  162 (380)
Q Consensus       157 ~N~l~g  162 (380)
                      +|++++
T Consensus       340 ~n~l~~  345 (466)
T 1o6v_A          340 NNKVSD  345 (466)
T ss_dssp             SSCCCC
T ss_pred             CCccCC
Confidence            555554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.97  E-value=5.5e-10  Score=113.68  Aligned_cols=87  Identities=23%  Similarity=0.326  Sum_probs=64.6

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++ +|   ..+++|+.|+|++|+|+ .+|.   .+++|+.|+|++|+|+ .||..|.++++|+.|+|+
T Consensus       222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred             CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence            56677777777765 44   45577777777777777 5665   5677888888888888 778888888888888888


Q ss_pred             CCcccccCcccccccc
Q 016905          157 SNNLTGRIPMQLFSVA  172 (380)
Q Consensus       157 ~N~l~g~~p~~~~~~~  172 (380)
                      +|++++.+|..+..+.
T Consensus       293 ~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          293 GNPLSERTLQALREIT  308 (622)
T ss_dssp             SCCCCHHHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHhcc
Confidence            8888887777666553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.96  E-value=3e-10  Score=111.56  Aligned_cols=64  Identities=28%  Similarity=0.406  Sum_probs=51.8

Q ss_pred             ccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECcCCcccc--cCccccccc
Q 016905          100 KFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTG--RIPMQLFSV  171 (380)
Q Consensus       100 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g--~~p~~~~~~  171 (380)
                      ++|+.|+|++|++++ +|..   +++|++|+|++|+++ .+|.   .+++|+.||+++|++++  .+|.++..+
T Consensus       317 ~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L  382 (454)
T 1jl5_A          317 PSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL  382 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred             CcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence            588889999998886 6764   578899999999988 6787   47889999999999988  788776544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.95  E-value=1e-09  Score=99.79  Aligned_cols=101  Identities=27%  Similarity=0.346  Sum_probs=80.5

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++ +|+ +.. ++|+.|+|++|++++ +| .++.+++|+.|+|++|++++ +| .+..+++|+.|+++
T Consensus        86 ~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~  158 (263)
T 1xeu_A           86 KLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLH  158 (263)
T ss_dssp             SCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECT
T ss_pred             CCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECC
Confidence            79999999999987 443 333 999999999999996 44 59999999999999999995 45 68999999999999


Q ss_pred             CCcccccCc-cccccccccccCCCccccC
Q 016905          157 SNNLTGRIP-MQLFSVATFNFTGTHLICG  184 (380)
Q Consensus       157 ~N~l~g~~p-~~~~~~~~~~~~gN~~lc~  184 (380)
                      +|++++.-. ..+.++..+++.+|+..+.
T Consensus       159 ~N~i~~~~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          159 GNEITNTGGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TSCCCBCTTSTTCCCCCEEEEEEEEEECC
T ss_pred             CCcCcchHHhccCCCCCEEeCCCCcccCC
Confidence            999997611 1234456677788876543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.95  E-value=2.1e-10  Score=110.04  Aligned_cols=105  Identities=20%  Similarity=0.288  Sum_probs=91.1

Q ss_pred             CEEEEEeCCCCCc--c---ccchhHhCCccCCeEEcCCCcCc----ccCChhhhCCcccCeeeccCcccccc----CCcc
Q 016905           77 NVISLTLGSNGFS--G---KISPSITKLKFLASLELQDNDLS----GTLPDFLGSMTHLQSLNLANNKFSGS----IPAT  143 (380)
Q Consensus        77 ~l~~l~L~~n~l~--g---~~p~~~~~l~~L~~L~Ls~N~l~----g~~p~~~~~l~~L~~l~Ls~N~l~g~----iP~~  143 (380)
                      +|+.|+|++|+++  |   .+|..+..+++|+.|+|++|.++    +.+|..+..+++|++|+|++|++++.    +|..
T Consensus       188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  267 (386)
T 2ca6_A          188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA  267 (386)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred             CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence            8999999999998  4   34558899999999999999997    78999999999999999999999987    7777


Q ss_pred             c--cCCCCCCEEECcCCcccc----cCcccc----ccccccccCCCcc
Q 016905          144 W--SQLSNLKHLDLSSNNLTG----RIPMQL----FSVATFNFTGTHL  181 (380)
Q Consensus       144 ~--~~l~~L~~L~ls~N~l~g----~~p~~~----~~~~~~~~~gN~~  181 (380)
                      +  +.+++|+.|+|++|.+++    .+|..+    .++..+.+.+|+.
T Consensus       268 l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence            7  449999999999999998    588665    4567778888865

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.94  E-value=1.2e-09  Score=107.45  Aligned_cols=101  Identities=27%  Similarity=0.382  Sum_probs=86.1

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++..|  ++.+++|+.|+|++|++++..|  ++.+++|+.|++++|++++.  ..+..+++|+.|+++
T Consensus       288 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~  361 (466)
T 1o6v_A          288 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAG  361 (466)
T ss_dssp             TCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECC
T ss_pred             ccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCC
Confidence            79999999999998655  8899999999999999998766  78999999999999999975  478999999999999


Q ss_pred             CCcccccCcc-ccccccccccCCCcccc
Q 016905          157 SNNLTGRIPM-QLFSVATFNFTGTHLIC  183 (380)
Q Consensus       157 ~N~l~g~~p~-~~~~~~~~~~~gN~~lc  183 (380)
                      +|++++.+|. .+.++..+.+.+|+...
T Consensus       362 ~n~l~~~~~~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          362 HNQISDLTPLANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             SSCCCBCGGGTTCTTCCEEECCCEEEEC
T ss_pred             CCccCccchhhcCCCCCEEeccCCcccC
Confidence            9999988872 23445667778887654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.92  E-value=1.2e-10  Score=109.14  Aligned_cols=114  Identities=19%  Similarity=0.261  Sum_probs=97.0

Q ss_pred             CCCCCceeeEecCCCEEEEEeCCCCCccccchhHhCC--ccCCeEEcCCCcCcccCChhhhCCcccCeeeccCcccccc-
Q 016905           63 SPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKL--KFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGS-  139 (380)
Q Consensus        63 ~~c~~w~gv~c~~~~l~~l~L~~n~l~g~~p~~~~~l--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~-  139 (380)
                      .-|..|.++.|+...++.|+|++|.+.   |..+..+  ++++.|++++|.+++.+|. +.++++|++|+|++|++++. 
T Consensus        34 ~vc~~W~~~~~~~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~  109 (336)
T 2ast_B           34 GVCKRWYRLASDESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVST  109 (336)
T ss_dssp             SSCHHHHHHHTCSTTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHH
T ss_pred             HHHHHHHHHhcCchhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHH
Confidence            345579998887767899999999987   5667777  8999999999999988776 66899999999999999987 


Q ss_pred             CCccccCCCCCCEEECcCCcccccCccccc---cccccccCCCc
Q 016905          140 IPATWSQLSNLKHLDLSSNNLTGRIPMQLF---SVATFNFTGTH  180 (380)
Q Consensus       140 iP~~~~~l~~L~~L~ls~N~l~g~~p~~~~---~~~~~~~~gN~  180 (380)
                      +|..+..+++|+.|++++|.+++.+|..+.   ++..+++.+|.
T Consensus       110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~  153 (336)
T 2ast_B          110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS  153 (336)
T ss_dssp             HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB
T ss_pred             HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCC
Confidence            999999999999999999999988876654   44566677764

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=98.90  E-value=3.4e-10  Score=102.62  Aligned_cols=106  Identities=15%  Similarity=0.036  Sum_probs=74.2

Q ss_pred             cccccccccCCCeeEEEEEe-CCCcE--EEEEEecccCCC-----------------------chHHHHHHHHHHHhcCc
Q 016905          273 FSESNIIGQGGFGKVYKGVL-SDNTK--VAVKRLQDYYSP-----------------------GGEAAFQREVHLISVAI  326 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~-~~g~~--vavK~l~~~~~~-----------------------~~~~~f~~e~~~l~~l~  326 (380)
                      |+..+.||+|+||.||+|.. .+|+.  ||||+++.....                       .....+.+|++.+.+++
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  128 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK  128 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999998 78988  999987532110                       01236889999999999


Q ss_pred             CCCCccceeeeeCCCceeEEeecccC-C----Chhhhcccc------cccceeeeeeccee-eecC
Q 016905          327 HKNLLQLIGYCTTSSERILVYPFMQN-L----SVAYRLRVS------HKIYTKIISLSSLH-CFSL  380 (380)
Q Consensus       327 H~Niv~l~g~~~~~~~~~lV~Ey~~~-G----sL~~~L~~~------~~~~~~~~aL~yLH-~~~i  380 (380)
                      |+++.....+..  +..+|||||+.+ |    +|.++....      ....+++.+|.||| +.||
T Consensus       129 ~~~i~~p~~~~~--~~~~lVmE~~g~~g~~~~~L~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~gi  192 (258)
T 1zth_A          129 EAGVSVPQPYTY--MKNVLLMEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEAEL  192 (258)
T ss_dssp             HTTCCCCCEEEE--ETTEEEEECCEETTEECCBHHHHGGGGGGSCHHHHHHHHHHHHHHHHHTSCE
T ss_pred             hCCCCCCeEEEc--CCCEEEEEecCCCCCccccHHHHhhccChHHHHHHHHHHHHHHHHHHHHCCE
Confidence            987533222222  357899999952 5    666665431      12245899999999 7764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.90  E-value=2.2e-09  Score=109.04  Aligned_cols=81  Identities=33%  Similarity=0.507  Sum_probs=75.0

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++.  +.+..+++|+.|+|++|.|++..|  +..+++|+.|+|++|+|++ +| .+..+++|+.|+|+
T Consensus       132 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~  205 (605)
T 1m9s_A          132 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  205 (605)
T ss_dssp             TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECC
T ss_pred             ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEcc
Confidence            799999999999986  689999999999999999998766  9999999999999999996 45 69999999999999


Q ss_pred             CCccccc
Q 016905          157 SNNLTGR  163 (380)
Q Consensus       157 ~N~l~g~  163 (380)
                      +|++++.
T Consensus       206 ~N~l~~~  212 (605)
T 1m9s_A          206 SQECLNK  212 (605)
T ss_dssp             SEEEECC
T ss_pred             CCcCcCC
Confidence            9999975

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.88  E-value=1e-09  Score=104.39  Aligned_cols=102  Identities=21%  Similarity=0.231  Sum_probs=87.0

Q ss_pred             EEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCC----hhhhCCc-ccCeeeccCccccccCCccccCC-----CC
Q 016905           80 SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLP----DFLGSMT-HLQSLNLANNKFSGSIPATWSQL-----SN  149 (380)
Q Consensus        80 ~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p----~~~~~l~-~L~~l~Ls~N~l~g~iP~~~~~l-----~~  149 (380)
                      .++|+.|+++|.+|..+...++|++|+|++|.+++..+    ..+.+++ +|++|+|++|++++..|..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            47899999999999988888889999999999998777    7788898 99999999999999888888776     99


Q ss_pred             CCEEECcCCcccccCcccc--------ccccccccCCCcc
Q 016905          150 LKHLDLSSNNLTGRIPMQL--------FSVATFNFTGTHL  181 (380)
Q Consensus       150 L~~L~ls~N~l~g~~p~~~--------~~~~~~~~~gN~~  181 (380)
                      |+.|||++|.+++..+..+        .++..+++.+|..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  121 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF  121 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC
Confidence            9999999999998777533        3455566666653

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=98.87  E-value=2.3e-10  Score=110.91  Aligned_cols=111  Identities=18%  Similarity=0.107  Sum_probs=75.5

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC--CchHHHHHHHHHHHhcCcC-CCCccceee--------
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS--PGGEAAFQREVHLISVAIH-KNLLQLIGY--------  336 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~f~~e~~~l~~l~H-~Niv~l~g~--------  336 (380)
                      .+..|...++||+|+||.||+|.. .+|+.||||++.....  ....+.|.+|+.++..++| +|......+        
T Consensus        76 ~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~  155 (413)
T 3dzo_A           76 RPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFD  155 (413)
T ss_dssp             CCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCE
T ss_pred             CceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchh
Confidence            344577788999999999999997 6799999999863222  2236789999999999987 322211111        


Q ss_pred             -------------eeC-----CCceeEEeecccCCChhhhcccc------c----------ccceeeeeecceeeecC
Q 016905          337 -------------CTT-----SSERILVYPFMQNLSVAYRLRVS------H----------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       337 -------------~~~-----~~~~~lV~Ey~~~GsL~~~L~~~------~----------~~~~~~~aL~yLH~~~i  380 (380)
                                   ...     ....+++|+++ +|+|.+++...      .          ...+++.||+|||+++|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i  232 (413)
T 3dzo_A          156 LVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGL  232 (413)
T ss_dssp             EEECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             hcccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence                         111     12356677765 68999998411      1          11468999999999875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.86  E-value=9.7e-10  Score=99.72  Aligned_cols=69  Identities=23%  Similarity=0.330  Sum_probs=59.2

Q ss_pred             hHhCCccCCeEEcCCCcCcc--cCChhhhCCcccCeeeccCccccccCCccccCCC--CCCEEECcCCcccccCc
Q 016905           95 SITKLKFLASLELQDNDLSG--TLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLS--NLKHLDLSSNNLTGRIP  165 (380)
Q Consensus        95 ~~~~l~~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~--~L~~L~ls~N~l~g~~p  165 (380)
                      ...++++|+.|+||+|+|++  .+|..++.+++|+.|||++|+|++.  ..+..+.  +|+.|+|++|.+++.+|
T Consensus       165 ~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          165 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             HHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            33578999999999999998  7788899999999999999999965  3344444  99999999999998877

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.86  E-value=5e-10  Score=113.95  Aligned_cols=74  Identities=27%  Similarity=0.506  Sum_probs=33.9

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +++.|++++|+++ .+|..+.  ++|+.|+|++|+|+ .+|.   .+++|++|+|++|+|+ .||.   .+++|+.|+|+
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence            4555555555555 4444433  44555555555544 3333   3444444444444444 3443   33444444444


Q ss_pred             CCccc
Q 016905          157 SNNLT  161 (380)
Q Consensus       157 ~N~l~  161 (380)
                      +|+++
T Consensus       110 ~N~l~  114 (622)
T 3g06_A          110 SNPLT  114 (622)
T ss_dssp             SCCCC
T ss_pred             CCcCC
Confidence            44443

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=98.78  E-value=8.8e-10  Score=105.12  Aligned_cols=107  Identities=11%  Similarity=0.056  Sum_probs=71.0

Q ss_pred             CcccccccccCCCeeEEEEEeCCCcEEEEEEecccCC-------------CchHHHH--------HHHHHHHhcCcCCCC
Q 016905          272 NFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYS-------------PGGEAAF--------QREVHLISVAIHKNL  330 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~-------------~~~~~~f--------~~e~~~l~~l~H~Ni  330 (380)
                      -|+....||+|+||.||+|..++|+.||||+++....             .......        .+|...|.++++..+
T Consensus        96 iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv  175 (397)
T 4gyi_A           96 VYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGF  175 (397)
T ss_dssp             CSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3778899999999999999998999999998752110             0011122        245555555554443


Q ss_pred             ccceeeeeCCCceeEEeecccCCChhhhcccc---cccceeeeeecceeeecC
Q 016905          331 LQLIGYCTTSSERILVYPFMQNLSVAYRLRVS---HKIYTKIISLSSLHCFSL  380 (380)
Q Consensus       331 v~l~g~~~~~~~~~lV~Ey~~~GsL~~~L~~~---~~~~~~~~aL~yLH~~~i  380 (380)
                      ....-+...  ..+|||||+++++|.++....   ....+++.++.|||+.||
T Consensus       176 ~vp~p~~~~--~~~LVME~i~G~~L~~l~~~~~~~~l~~qll~~l~~lH~~gI  226 (397)
T 4gyi_A          176 PVPEPIAQS--RHTIVMSLVDALPMRQVSSVPDPASLYADLIALILRLAKHGL  226 (397)
T ss_dssp             SCCCEEEEE--TTEEEEECCSCEEGGGCCCCSCHHHHHHHHHHHHHHHHHTTE
T ss_pred             CCCeeeecc--CceEEEEecCCccHhhhcccHHHHHHHHHHHHHHHHHHHCCC
Confidence            322222221  237999999999998876432   123468999999998875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.78  E-value=4.8e-09  Score=95.17  Aligned_cols=76  Identities=25%  Similarity=0.358  Sum_probs=67.1

Q ss_pred             CEEEEEeCCCCCcc--ccchhHhCCccCCeEEcCCCcCcccCChhhhCCc--ccCeeeccCccccccCCc-------ccc
Q 016905           77 NVISLTLGSNGFSG--KISPSITKLKFLASLELQDNDLSGTLPDFLGSMT--HLQSLNLANNKFSGSIPA-------TWS  145 (380)
Q Consensus        77 ~l~~l~L~~n~l~g--~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~--~L~~l~Ls~N~l~g~iP~-------~~~  145 (380)
                      +|+.|+|++|.|++  .+|..+..+++|+.|+|++|+|++.  .++..+.  +|+.|+|++|.+++.+|.       .+.
T Consensus       171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~  248 (267)
T 3rw6_A          171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE  248 (267)
T ss_dssp             TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred             CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence            79999999999999  6788899999999999999999975  4456666  999999999999998884       377


Q ss_pred             CCCCCCEEE
Q 016905          146 QLSNLKHLD  154 (380)
Q Consensus       146 ~l~~L~~L~  154 (380)
                      .+++|+.||
T Consensus       249 ~~P~L~~LD  257 (267)
T 3rw6_A          249 RFPKLLRLD  257 (267)
T ss_dssp             HCTTCCEES
T ss_pred             HCcccCeEC
Confidence            889999987

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.77  E-value=1.4e-09  Score=106.26  Aligned_cols=105  Identities=18%  Similarity=0.242  Sum_probs=81.5

Q ss_pred             CEEEEEeCCCCCccccchhHhCC-----ccCCeEEcCCCcCccc----CChhhhCCcccCeeeccCccccccCCccccC-
Q 016905           77 NVISLTLGSNGFSGKISPSITKL-----KFLASLELQDNDLSGT----LPDFLGSMTHLQSLNLANNKFSGSIPATWSQ-  146 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l-----~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~-  146 (380)
                      +++.|+|++|.+++..+..+...     ++|+.|+|++|.+++.    +|..+..+++|+.|||++|++++..+..+.. 
T Consensus       285 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~  364 (461)
T 1z7x_W          285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG  364 (461)
T ss_dssp             TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHH
T ss_pred             CcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHH
Confidence            78999999999987766665543     6899999999999875    6777788899999999999988776665543 


Q ss_pred             ----CCCCCEEECcCCcccc----cCcccc---ccccccccCCCcc
Q 016905          147 ----LSNLKHLDLSSNNLTG----RIPMQL---FSVATFNFTGTHL  181 (380)
Q Consensus       147 ----l~~L~~L~ls~N~l~g----~~p~~~---~~~~~~~~~gN~~  181 (380)
                          .++|+.|++++|++++    .+|..+   .++..+++.+|+.
T Consensus       365 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i  410 (461)
T 1z7x_W          365 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL  410 (461)
T ss_dssp             HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred             HcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence                6789999999999886    667654   3456667777754

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.71  E-value=1.8e-09  Score=105.50  Aligned_cols=104  Identities=18%  Similarity=0.180  Sum_probs=71.7

Q ss_pred             CEEEEEeCCCCCccccch-----hHhCCccCCeEEcCCCcCccc----CChhhhCCcccCeeeccCccccccCCccccC-
Q 016905           77 NVISLTLGSNGFSGKISP-----SITKLKFLASLELQDNDLSGT----LPDFLGSMTHLQSLNLANNKFSGSIPATWSQ-  146 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~-----~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~-  146 (380)
                      +++.|+|++|.+++....     .+..+++|++|+|++|.+++.    +|..+.++++|++|+|++|++++..+..+.. 
T Consensus       228 ~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~  307 (461)
T 1z7x_W          228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET  307 (461)
T ss_dssp             TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH
T ss_pred             CccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH
Confidence            788888888888765322     223578888888888888764    6777777888888888888887655544433 


Q ss_pred             ----CCCCCEEECcCCccccc----Ccccc---ccccccccCCCc
Q 016905          147 ----LSNLKHLDLSSNNLTGR----IPMQL---FSVATFNFTGTH  180 (380)
Q Consensus       147 ----l~~L~~L~ls~N~l~g~----~p~~~---~~~~~~~~~gN~  180 (380)
                          .++|+.|++++|.+++.    +|..+   .++..+++++|.
T Consensus       308 l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  352 (461)
T 1z7x_W          308 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR  352 (461)
T ss_dssp             HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB
T ss_pred             hccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc
Confidence                26788888888888765    33332   344555666663

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.57  E-value=1.8e-08  Score=96.24  Aligned_cols=86  Identities=19%  Similarity=0.251  Sum_probs=54.4

Q ss_pred             CEEEEEeCCCCCccccchhHh-----CCccCCeEEcCCCcCcc----cCChhhhCCcccCeeeccCcccccc----CCcc
Q 016905           77 NVISLTLGSNGFSGKISPSIT-----KLKFLASLELQDNDLSG----TLPDFLGSMTHLQSLNLANNKFSGS----IPAT  143 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~-----~l~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~l~Ls~N~l~g~----iP~~  143 (380)
                      +++.|+|++|.++..-...+.     ..++|+.|+|++|.|+.    .++..+..+++|++|||++|+++..    ++..
T Consensus       127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~  206 (372)
T 3un9_A          127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ  206 (372)
T ss_dssp             TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred             hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence            566677777766655444432     34667777777777754    2445556677777777777777642    3455


Q ss_pred             ccCCCCCCEEECcCCcccc
Q 016905          144 WSQLSNLKHLDLSSNNLTG  162 (380)
Q Consensus       144 ~~~l~~L~~L~ls~N~l~g  162 (380)
                      +...++|+.|||++|.++.
T Consensus       207 L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          207 LDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             GGGCSCCCEEECCSSCCCH
T ss_pred             HhcCCCcCeEECCCCCCCH
Confidence            5666677777777777764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.57  E-value=5.6e-08  Score=91.82  Aligned_cols=103  Identities=17%  Similarity=0.184  Sum_probs=80.9

Q ss_pred             EecCCCEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCc-cccCCCCC
Q 016905           72 TCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPA-TWSQLSNL  150 (380)
Q Consensus        72 ~c~~~~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~-~~~~l~~L  150 (380)
                      .|+.   ..++.++++++ .||..+  .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.||. .|.++++|
T Consensus         8 ~C~~---~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l   81 (350)
T 4ay9_X            8 HCSN---RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL   81 (350)
T ss_dssp             EEET---TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTC
T ss_pred             EeeC---CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhh
Confidence            6764   35788999999 788766  46899999999999954446799999999999999999888885 67899988


Q ss_pred             CE-EECcCCcccccCccccccc---cccccCCCc
Q 016905          151 KH-LDLSSNNLTGRIPMQLFSV---ATFNFTGTH  180 (380)
Q Consensus       151 ~~-L~ls~N~l~g~~p~~~~~~---~~~~~~gN~  180 (380)
                      .. +++++|+++...|..+..+   ..+.+.+|.
T Consensus        82 ~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~  115 (350)
T 4ay9_X           82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG  115 (350)
T ss_dssp             CEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC
T ss_pred             hhhhcccCCcccccCchhhhhccccccccccccc
Confidence            75 6777899997777665543   444555553

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.53  E-value=2.2e-08  Score=95.65  Aligned_cols=89  Identities=21%  Similarity=0.255  Sum_probs=74.2

Q ss_pred             CEEEEEeCCCCCccc----cchhHhCCccCCeEEcCCCcCcc----cCChhhhCCcccCeeeccCcccccc----CCccc
Q 016905           77 NVISLTLGSNGFSGK----ISPSITKLKFLASLELQDNDLSG----TLPDFLGSMTHLQSLNLANNKFSGS----IPATW  144 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~----~p~~~~~l~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~l~Ls~N~l~g~----iP~~~  144 (380)
                      +|+.|+|++|.++..    ++..+..+++|++|+|++|.|+.    .++..+...++|+.|||++|+++..    ++..+
T Consensus       156 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L  235 (372)
T 3un9_A          156 QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAA  235 (372)
T ss_dssp             CCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHH
T ss_pred             ccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHH
Confidence            799999999999763    55666889999999999999985    3467778889999999999999863    45556


Q ss_pred             cCCCCCCEEECcCCcccccCc
Q 016905          145 SQLSNLKHLDLSSNNLTGRIP  165 (380)
Q Consensus       145 ~~l~~L~~L~ls~N~l~g~~p  165 (380)
                      ...++|+.|||++|.|+..-.
T Consensus       236 ~~~~~L~~L~Ls~N~i~~~g~  256 (372)
T 3un9_A          236 REHPSLELLHLYFNELSSEGR  256 (372)
T ss_dssp             HHCSSCCEEECTTSSCCHHHH
T ss_pred             HhCCCCCEEeccCCCCCHHHH
Confidence            677999999999999875433

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.29  E-value=3.6e-07  Score=78.23  Aligned_cols=87  Identities=17%  Similarity=0.267  Sum_probs=68.3

Q ss_pred             CEEEEEeCCC-CCccc----cchhHhCCccCCeEEcCCCcCcc----cCChhhhCCcccCeeeccCcccccc----CCcc
Q 016905           77 NVISLTLGSN-GFSGK----ISPSITKLKFLASLELQDNDLSG----TLPDFLGSMTHLQSLNLANNKFSGS----IPAT  143 (380)
Q Consensus        77 ~l~~l~L~~n-~l~g~----~p~~~~~l~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~l~Ls~N~l~g~----iP~~  143 (380)
                      .|+.|+|++| .++..    +...+...++|++|+|++|.|+.    .+...+...+.|++|+|++|+++..    +...
T Consensus        37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~  116 (185)
T 1io0_A           37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA  116 (185)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred             CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence            7889999998 88754    44556667899999999999864    2455566678899999999998854    5667


Q ss_pred             ccCCCCCCEEEC--cCCccccc
Q 016905          144 WSQLSNLKHLDL--SSNNLTGR  163 (380)
Q Consensus       144 ~~~l~~L~~L~l--s~N~l~g~  163 (380)
                      +...++|+.|+|  ++|.+...
T Consensus       117 L~~n~~L~~L~L~~~~N~i~~~  138 (185)
T 1io0_A          117 LQSNTSLIELRIDNQSQPLGNN  138 (185)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHH
T ss_pred             HHhCCCceEEEecCCCCCCCHH
Confidence            777889999999  78888743

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.29  E-value=1.8e-07  Score=94.22  Aligned_cols=104  Identities=14%  Similarity=0.132  Sum_probs=70.1

Q ss_pred             CEEEEEeC----CCCCccc-----cchhHhCCccCCeEEcCCC--cCcccCChhhhC-CcccCeeeccCccccc-cCCcc
Q 016905           77 NVISLTLG----SNGFSGK-----ISPSITKLKFLASLELQDN--DLSGTLPDFLGS-MTHLQSLNLANNKFSG-SIPAT  143 (380)
Q Consensus        77 ~l~~l~L~----~n~l~g~-----~p~~~~~l~~L~~L~Ls~N--~l~g~~p~~~~~-l~~L~~l~Ls~N~l~g-~iP~~  143 (380)
                      +|+.|+|+    .|.+++.     ++..+.++++|+.|+|+++  .+++..+..++. +++|+.|+|++|++++ .+|..
T Consensus       404 ~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  483 (592)
T 3ogk_B          404 NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF  483 (592)
T ss_dssp             SCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHH
T ss_pred             CCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHH
Confidence            68888885    6777763     5556777888888888743  366666655554 7778888888888876 45555


Q ss_pred             ccCCCCCCEEECcCCcccccCcc----ccccccccccCCCc
Q 016905          144 WSQLSNLKHLDLSSNNLTGRIPM----QLFSVATFNFTGTH  180 (380)
Q Consensus       144 ~~~l~~L~~L~ls~N~l~g~~p~----~~~~~~~~~~~gN~  180 (380)
                      +..+++|+.|++++|.+++..+.    .+.++..+++.+|.
T Consensus       484 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          484 SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             HTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             HhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence            67778888888888887654322    23345556666665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.25  E-value=3e-07  Score=78.77  Aligned_cols=86  Identities=17%  Similarity=0.198  Sum_probs=71.0

Q ss_pred             CCEEEEEeCCCCCccc----cchhHhCCccCCeEEcCCCcCccc----CChhhhCCcccCeeec--cCcccccc----CC
Q 016905           76 GNVISLTLGSNGFSGK----ISPSITKLKFLASLELQDNDLSGT----LPDFLGSMTHLQSLNL--ANNKFSGS----IP  141 (380)
Q Consensus        76 ~~l~~l~L~~n~l~g~----~p~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~l~L--s~N~l~g~----iP  141 (380)
                      ..|+.|+|++|.++..    +...+...++|++|+|++|.|+..    +...+...++|++|+|  ++|.++..    +.
T Consensus        65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~  144 (185)
T 1io0_A           65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA  144 (185)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred             CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence            3799999999999864    345566678999999999999863    5677788899999999  88999865    34


Q ss_pred             ccccCCCCCCEEECcCCccc
Q 016905          142 ATWSQLSNLKHLDLSSNNLT  161 (380)
Q Consensus       142 ~~~~~l~~L~~L~ls~N~l~  161 (380)
                      ..+...++|+.|||++|.+.
T Consensus       145 ~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          145 NMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCcCEEeccCCCCC
Confidence            45666789999999999886

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.12  E-value=3.3e-06  Score=78.80  Aligned_cols=84  Identities=17%  Similarity=0.231  Sum_probs=72.3

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccC-eeeccCccccccCCccccCCCCCCEEEC
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQ-SLNLANNKFSGSIPATWSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~-~l~Ls~N~l~g~iP~~~~~l~~L~~L~l  155 (380)
                      +|+.|+|++|+++..-+..|.++++|+.|+|++| ++..-+..|.+|++|+ .|+|++ +++..-+.+|.++++|+.|++
T Consensus       227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l  304 (329)
T 3sb4_A          227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA  304 (329)
T ss_dssp             TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred             CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence            8999999999999666677999999999999998 7755567799999999 999998 787444578999999999999


Q ss_pred             cCCcccc
Q 016905          156 SSNNLTG  162 (380)
Q Consensus       156 s~N~l~g  162 (380)
                      ++|+++.
T Consensus       305 ~~n~i~~  311 (329)
T 3sb4_A          305 TGDKITT  311 (329)
T ss_dssp             CSSCCCE
T ss_pred             CCCccCc
Confidence            9998873

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.03  E-value=8.6e-07  Score=89.24  Aligned_cols=103  Identities=15%  Similarity=0.177  Sum_probs=77.3

Q ss_pred             CEEEEEeC--C----CCCcc-----ccchhHhCCccCCeEEcCCCcCcccCChhhhC-CcccCeeeccCccccccCCccc
Q 016905           77 NVISLTLG--S----NGFSG-----KISPSITKLKFLASLELQDNDLSGTLPDFLGS-MTHLQSLNLANNKFSGSIPATW  144 (380)
Q Consensus        77 ~l~~l~L~--~----n~l~g-----~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~-l~~L~~l~Ls~N~l~g~iP~~~  144 (380)
                      +|+.|+|+  +    |.+++     .++..+..+++|+.|+|++ ++++..+..++. +++|+.|+|++|.+++..+..+
T Consensus       398 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l  476 (594)
T 2p1m_B          398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV  476 (594)
T ss_dssp             TCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHH
T ss_pred             CcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHH
Confidence            79999998  4    56662     3444577889999999987 777777777776 8999999999999987766655


Q ss_pred             -cCCCCCCEEECcCCcccccCcc----ccccccccccCCCc
Q 016905          145 -SQLSNLKHLDLSSNNLTGRIPM----QLFSVATFNFTGTH  180 (380)
Q Consensus       145 -~~l~~L~~L~ls~N~l~g~~p~----~~~~~~~~~~~gN~  180 (380)
                       ..+++|+.|+|++|.+++..+.    .+.++..+++.+|+
T Consensus       477 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~  517 (594)
T 2p1m_B          477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS  517 (594)
T ss_dssp             HHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred             HhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence             6689999999999998654332    23455666666654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.02  E-value=1.7e-06  Score=87.02  Aligned_cols=64  Identities=14%  Similarity=0.237  Sum_probs=31.6

Q ss_pred             CCccCCeEEcCCCcCccc----CChhhhCCcccCeeeccCcccc----ccCCccccCCCCCCEEECcCCccc
Q 016905           98 KLKFLASLELQDNDLSGT----LPDFLGSMTHLQSLNLANNKFS----GSIPATWSQLSNLKHLDLSSNNLT  161 (380)
Q Consensus        98 ~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~l~Ls~N~l~----g~iP~~~~~l~~L~~L~ls~N~l~  161 (380)
                      ++++|++|+|++|.+++.    ++..+.++++|++|+|++|+++    +.+|..+.++++|+.|++++|.+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~  233 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL  233 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence            455555555555555443    3334444555555555555554    333334444555555555555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.01  E-value=1.5e-06  Score=87.56  Aligned_cols=83  Identities=17%  Similarity=0.151  Sum_probs=68.5

Q ss_pred             CEEEEEeCCCCCccccchhHh-CCccCCeEEcCCC-cCccc-CChhhhCCcccCeeeccCccccccCCcccc----CCCC
Q 016905           77 NVISLTLGSNGFSGKISPSIT-KLKFLASLELQDN-DLSGT-LPDFLGSMTHLQSLNLANNKFSGSIPATWS----QLSN  149 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~-~l~~L~~L~Ls~N-~l~g~-~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~----~l~~  149 (380)
                      +|+.|+|++|.+++..+..+. .+++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+.    .+++
T Consensus       106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~  185 (594)
T 2p1m_B          106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS  185 (594)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred             CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence            799999999999998888886 7899999999999 55543 566666899999999999998876655444    5678


Q ss_pred             CCEEECcCCc
Q 016905          150 LKHLDLSSNN  159 (380)
Q Consensus       150 L~~L~ls~N~  159 (380)
                      |+.|++++|.
T Consensus       186 L~~L~l~~~~  195 (594)
T 2p1m_B          186 LVSLNISCLA  195 (594)
T ss_dssp             CCEEECTTCC
T ss_pred             CcEEEecccC
Confidence            9999999886

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=97.91  E-value=7.9e-06  Score=73.42  Aligned_cols=110  Identities=14%  Similarity=0.089  Sum_probs=82.6

Q ss_pred             HHHHhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCc-CCCCccceeeeeCCCcee
Q 016905          266 LQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI-HKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       266 l~~~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~-H~Niv~l~g~~~~~~~~~  344 (380)
                      +.....+|+....++.|+.+.||+... .+..+++|....... .....+.+|.+++..++ |..+.++++++...+..+
T Consensus         9 l~~~l~~~~~~~~~~g~s~~~v~~~~~-~~~~~vlK~~~~~~~-~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~   86 (263)
T 3tm0_A            9 LKKLIEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYK-GTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSN   86 (263)
T ss_dssp             HHHHHTTSEEEECCSCCSSSEEEEEEC-SSCEEEEEEECGGGT-TSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEE
T ss_pred             HHHHhccceeEeeccCCCCCeEEEEEC-CCCcEEEEeCCcccC-CCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceE
Confidence            344456787778888888999999985 478999999853211 22346889999999884 677889999998888899


Q ss_pred             EEeecccCCChhhhcccc----cccceeeeeecceee
Q 016905          345 LVYPFMQNLSVAYRLRVS----HKIYTKIISLSSLHC  377 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~----~~~~~~~~aL~yLH~  377 (380)
                      +||||+++.+|.+.+...    ....++..+++.||+
T Consensus        87 lv~e~i~G~~l~~~~~~~~~~~~~~~~l~~~l~~LH~  123 (263)
T 3tm0_A           87 LLMSEADGVLCSEEYEDEQSPEKIIELYAECIRLFHS  123 (263)
T ss_dssp             EEEECCSSEEHHHHCCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCeehhhccCCcccHHHHHHHHHHHHHHHhC
Confidence            999999999998864211    122447778888886

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.72  E-value=1.7e-05  Score=66.89  Aligned_cols=83  Identities=11%  Similarity=0.115  Sum_probs=66.6

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCc-CcccCChhhhCC----cccCeeeccCcc-ccccCCccccCCCCC
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDND-LSGTLPDFLGSM----THLQSLNLANNK-FSGSIPATWSQLSNL  150 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~-l~g~~p~~~~~l----~~L~~l~Ls~N~-l~g~iP~~~~~l~~L  150 (380)
                      +|+.|||+++.++..--..+.++++|+.|+|+++. ++..-=..++.+    ++|+.|||+++. +|..==..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            79999999999987766778899999999999985 775434456664    479999999974 774333457889999


Q ss_pred             CEEECcCCc
Q 016905          151 KHLDLSSNN  159 (380)
Q Consensus       151 ~~L~ls~N~  159 (380)
                      +.|+|++..
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            999999874

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=97.72  E-value=1.4e-05  Score=71.25  Aligned_cols=101  Identities=11%  Similarity=0.028  Sum_probs=70.7

Q ss_pred             CcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCC--ccceeeeeCCCceeEEeec
Q 016905          272 NFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNL--LQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Ni--v~l~g~~~~~~~~~lV~Ey  349 (380)
                      ++....+.+.|..+.||+....+|..+++|.....    ....+.+|++++..+++.++  .+++++...++..++||||
T Consensus        21 ~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~----~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~   96 (264)
T 1nd4_A           21 GYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG----ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGE   96 (264)
T ss_dssp             TCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC----TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEEC
T ss_pred             CCceEecccCCCCceEEEEecCCCCeEEEEeCCcc----cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEe
Confidence            34433333456679999998777888999987532    23457889999998865554  4688888877788999999


Q ss_pred             ccCCChhhhcccc---cccceeeeeecceeee
Q 016905          350 MQNLSVAYRLRVS---HKIYTKIISLSSLHCF  378 (380)
Q Consensus       350 ~~~GsL~~~L~~~---~~~~~~~~aL~yLH~~  378 (380)
                      +++.+|.  ....   ....++...+..||+.
T Consensus        97 i~G~~l~--~~~~~~~~~~~~l~~~l~~lh~~  126 (264)
T 1nd4_A           97 VPGQDLL--SSHLAPAEKVSIMADAMRRLHTL  126 (264)
T ss_dssp             CSSEETT--TSCCCHHHHHHHHHHHHHHHTTS
T ss_pred             cCCcccC--cCcCCHhHHHHHHHHHHHHHhCC
Confidence            9999985  2211   1223466677777764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.56  E-value=2.2e-05  Score=74.39  Aligned_cols=103  Identities=19%  Similarity=0.249  Sum_probs=70.1

Q ss_pred             CEEEEEeCCCCCccccchhHh--CCccCCeEEcCC--CcCccc-----CChhh--hCCcccCeeeccCccccccCCcccc
Q 016905           77 NVISLTLGSNGFSGKISPSIT--KLKFLASLELQD--NDLSGT-----LPDFL--GSMTHLQSLNLANNKFSGSIPATWS  145 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~--~l~~L~~L~Ls~--N~l~g~-----~p~~~--~~l~~L~~l~Ls~N~l~g~iP~~~~  145 (380)
                      +|+.|+|..+.++...-..+.  .+++|+.|+|+.  |...|.     +...+  ..+++|++|+|++|++++..+..+.
T Consensus       194 ~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la  273 (362)
T 2ra8_A          194 NLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL  273 (362)
T ss_dssp             TCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHH
T ss_pred             CCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHH
Confidence            799999998888766655665  789999999864  332222     11122  3578999999999998876554443


Q ss_pred             ---CCCCCCEEECcCCccccc----Cccc---cccccccccCCC
Q 016905          146 ---QLSNLKHLDLSSNNLTGR----IPMQ---LFSVATFNFTGT  179 (380)
Q Consensus       146 ---~l~~L~~L~ls~N~l~g~----~p~~---~~~~~~~~~~gN  179 (380)
                         .+++|+.||||.|.+++.    ++..   +.++..+.+..|
T Consensus       274 ~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          274 ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence               578899999999998863    3322   234455555555

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.54  E-value=0.0001  Score=59.01  Aligned_cols=56  Identities=20%  Similarity=0.299  Sum_probs=31.8

Q ss_pred             eEEcCCCcCc-ccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECcCCccc
Q 016905          104 SLELQDNDLS-GTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLT  161 (380)
Q Consensus       104 ~L~Ls~N~l~-g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~  161 (380)
                      .++.++++|+ ..+|..+  -++|++|||++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4555555554 2344322  134667777777777333345666777777777766554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.49  E-value=0.00012  Score=67.97  Aligned_cols=77  Identities=13%  Similarity=0.052  Sum_probs=67.8

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCC-eEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEEC
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLA-SLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~-~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~l  155 (380)
                      +|+.|+|++| ++..-+..|.++++|+ .|+|.+ +++-.-+..|.+|++|+.|+|++|+++..-+..|.++++|+.++.
T Consensus       251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            8999999998 8766677899999999 999999 787566788999999999999999999555568999999999874

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.37  E-value=6.3e-05  Score=71.19  Aligned_cols=100  Identities=15%  Similarity=0.175  Sum_probs=66.7

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhh--CCcccCeeeccC--cccccc--C---Cccc--c
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLG--SMTHLQSLNLAN--NKFSGS--I---PATW--S  145 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~l~~L~~l~Ls~--N~l~g~--i---P~~~--~  145 (380)
                      +|+.|+|++|.- -.+++ + .+++|+.|+|+.+.++...-..++  .+++|++|+|+.  |...|.  +   ...+  .
T Consensus       173 ~L~~L~L~g~~~-l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~  249 (362)
T 2ra8_A          173 LLNNLKIKGTNN-LSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD  249 (362)
T ss_dssp             TCCEEEEECCBT-CBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTT
T ss_pred             CCcEEEEeCCCC-ceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcC
Confidence            899999988731 13444 3 489999999999888755445555  789999999964  333222  1   1122  3


Q ss_pred             CCCCCCEEECcCCcccccCcccc------ccccccccCCC
Q 016905          146 QLSNLKHLDLSSNNLTGRIPMQL------FSVATFNFTGT  179 (380)
Q Consensus       146 ~l~~L~~L~ls~N~l~g~~p~~~------~~~~~~~~~gN  179 (380)
                      .+++|+.|+|++|.+....+..+      .++..++++.|
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n  289 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG  289 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence            57999999999999886443322      34455555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.36  E-value=0.00021  Score=57.18  Aligned_cols=56  Identities=20%  Similarity=0.381  Sum_probs=45.7

Q ss_pred             EEEeCCCCCc-cccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCcccc
Q 016905           80 SLTLGSNGFS-GKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFS  137 (380)
Q Consensus        80 ~l~L~~n~l~-g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~  137 (380)
                      .++.++++|+ ..+|..+.  ++|+.|+|++|+|+..-+..|..+++|++|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            6778888887 46675432  47999999999999666677899999999999999775

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=97.01  E-value=0.00038  Score=65.47  Aligned_cols=102  Identities=10%  Similarity=0.103  Sum_probs=68.4

Q ss_pred             ccccccCCCeeEEEEEeCCCcEEEEEEec--ccCCCchHHHHHHHHHHHhcCc--CCCCccceeeeeCC---CceeEEee
Q 016905          276 SNIIGQGGFGKVYKGVLSDNTKVAVKRLQ--DYYSPGGEAAFQREVHLISVAI--HKNLLQLIGYCTTS---SERILVYP  348 (380)
Q Consensus       276 ~~~lg~G~~g~Vy~~~~~~g~~vavK~l~--~~~~~~~~~~f~~e~~~l~~l~--H~Niv~l~g~~~~~---~~~~lV~E  348 (380)
                      .+.++.|.++.||+.... +..+++|+..  ..........+.+|.+++..++  +..+.++++++...   +..++|||
T Consensus        43 ~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme  121 (359)
T 3dxp_A           43 VEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIME  121 (359)
T ss_dssp             EEECCC-CCSCEEEEECS-SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEE
T ss_pred             EEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEE
Confidence            566899999999998874 4678888775  3221223456888999999886  45678899988766   44899999


Q ss_pred             cccCCChhhh-cccc------cccceeeeeecceeee
Q 016905          349 FMQNLSVAYR-LRVS------HKIYTKIISLSSLHCF  378 (380)
Q Consensus       349 y~~~GsL~~~-L~~~------~~~~~~~~aL~yLH~~  378 (380)
                      |+++..+.+. +...      ....++...|+.||+.
T Consensus       122 ~v~G~~l~~~~~~~l~~~~~~~~~~~l~~~La~LH~~  158 (359)
T 3dxp_A          122 FVSGRVLWDQSLPGMSPAERTAIYDEMNRVIAAMHTV  158 (359)
T ss_dssp             CCCCBCCCCTTCTTCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ecCCeecCCCccccCCHHHHHHHHHHHHHHHHHHhCC
Confidence            9999888542 2211      1134477788888864

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.98  E-value=0.00061  Score=58.39  Aligned_cols=83  Identities=11%  Similarity=0.197  Sum_probs=62.7

Q ss_pred             CCEEEEEeCCC-CCccc----cchhHhCCccCCeEEcCCCcCcc----cCChhhhCCcccCeeeccCcccccc----CCc
Q 016905           76 GNVISLTLGSN-GFSGK----ISPSITKLKFLASLELQDNDLSG----TLPDFLGSMTHLQSLNLANNKFSGS----IPA  142 (380)
Q Consensus        76 ~~l~~l~L~~n-~l~g~----~p~~~~~l~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~l~Ls~N~l~g~----iP~  142 (380)
                      ..|+.|+|++| .+...    +-..+..-+.|+.|+|++|.|..    .|-..+..=+.|++|+|++|+++..    |-.
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            37999999986 77653    44556677899999999999974    2445555668899999999999854    223


Q ss_pred             cccCCCCCCEEECcCC
Q 016905          143 TWSQLSNLKHLDLSSN  158 (380)
Q Consensus       143 ~~~~l~~L~~L~ls~N  158 (380)
                      .+..-..|+.|+|++|
T Consensus       121 aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HTTTTCCCSEEECCCC
T ss_pred             HHhhCCceeEEECCCC
Confidence            4555678999999876

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.73  E-value=0.0026  Score=60.92  Aligned_cols=80  Identities=14%  Similarity=0.148  Sum_probs=62.0

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCc-----ccCChhhhCCcccCeeeccCccccccCCccccCCCCCC
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLS-----GTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLK  151 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~-----g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~  151 (380)
                      +|+.++| .++++..-+..|.++++|+.+++.+|.+.     -.-+..|.+|++|+.++|. |+++-.-..+|.++.+|+
T Consensus       249 ~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~  326 (401)
T 4fdw_A          249 GITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVT  326 (401)
T ss_dssp             CCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCC
T ss_pred             CccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCcc
Confidence            6888888 45577566778999999999999988775     2345678899999999998 557733345788899999


Q ss_pred             EEECcCC
Q 016905          152 HLDLSSN  158 (380)
Q Consensus       152 ~L~ls~N  158 (380)
                      .++|.+|
T Consensus       327 ~l~lp~~  333 (401)
T 4fdw_A          327 QLTIPAN  333 (401)
T ss_dssp             EEEECTT
T ss_pred             EEEECcc
Confidence            9998655

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.23  E-value=0.0065  Score=58.10  Aligned_cols=77  Identities=13%  Similarity=0.126  Sum_probs=36.9

Q ss_pred             EEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECcC
Q 016905           78 VISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSS  157 (380)
Q Consensus        78 l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls~  157 (380)
                      |+.++|.. .++..-+..|.++++|+.++|++|+++ .||.....+.+|+.+.|.+| ++-.-+.+|.++.+|+.+++.+
T Consensus       159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred             ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence            44555543 444333444555555555555555555 33332222455555555532 4422223455555555555544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.20  E-value=0.0019  Score=55.25  Aligned_cols=86  Identities=13%  Similarity=0.124  Sum_probs=62.8

Q ss_pred             CCCEEEEEeCCCCCccccc----hhHhCCccCCeEEcCCCcCccc----CChhhhCCcccCeeeccCc---ccccc----
Q 016905           75 NGNVISLTLGSNGFSGKIS----PSITKLKFLASLELQDNDLSGT----LPDFLGSMTHLQSLNLANN---KFSGS----  139 (380)
Q Consensus        75 ~~~l~~l~L~~n~l~g~~p----~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~l~Ls~N---~l~g~----  139 (380)
                      +..|+.|+|++|.++..--    ..+..-+.|+.|+|++|.|+..    +-..+..=+.|+.|+|++|   ++...    
T Consensus        69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~  148 (197)
T 1pgv_A           69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  148 (197)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence            3489999999999986543    4445668999999999999853    3344555577999999975   33422    


Q ss_pred             CCccccCCCCCCEEECcCCcc
Q 016905          140 IPATWSQLSNLKHLDLSSNNL  160 (380)
Q Consensus       140 iP~~~~~l~~L~~L~ls~N~l  160 (380)
                      |-..+..-++|+.|+++.|..
T Consensus       149 ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          149 MMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhCCCcCeEeccCCCc
Confidence            334455668899999987754

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=95.74  E-value=0.01  Score=54.69  Aligned_cols=93  Identities=12%  Similarity=0.103  Sum_probs=68.0

Q ss_pred             ccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCc---CCCCccceeeeeCCCceeEEeecccC
Q 016905          276 SNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI---HKNLLQLIGYCTTSSERILVYPFMQN  352 (380)
Q Consensus       276 ~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~---H~Niv~l~g~~~~~~~~~lV~Ey~~~  352 (380)
                      .+.++.|....+|+... ++..+++|+-...    ....|..|.+.|..+.   ...+.++++++...+..++||||+++
T Consensus        41 ~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~----~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G  115 (312)
T 3jr1_A           41 KEKLYSGEMNEIWLIND-EVQTVFVKINERS----YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNK  115 (312)
T ss_dssp             EEEECCSSSSEEEEEES-SSCEEEEEEEEGG----GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCC
T ss_pred             eEEeCCccceeeeEEEE-CCCeEEEEeCCcc----cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccC
Confidence            45688999999999886 5678888976431    3567899999988874   25678889988877889999999998


Q ss_pred             CChhhhcccccccceeeeeecceeee
Q 016905          353 LSVAYRLRVSHKIYTKIISLSSLHCF  378 (380)
Q Consensus       353 GsL~~~L~~~~~~~~~~~aL~yLH~~  378 (380)
                      ..+..     ....++...|+-||+.
T Consensus       116 ~~~~~-----~~~~~lG~~LA~LH~~  136 (312)
T 3jr1_A          116 SKNKQ-----SSFTIFAEKIAQLHQI  136 (312)
T ss_dssp             CCCCT-----THHHHHHHHHHHHHHC
T ss_pred             CCCCc-----hhHHHHHHHHHHHHcC
Confidence            87532     1223355556666653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=95.57  E-value=0.0029  Score=53.17  Aligned_cols=70  Identities=11%  Similarity=0.167  Sum_probs=51.1

Q ss_pred             cchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCcc-ccccCCccccCC----CCCCEEECcCCc-cc
Q 016905           92 ISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK-FSGSIPATWSQL----SNLKHLDLSSNN-LT  161 (380)
Q Consensus        92 ~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~-l~g~iP~~~~~l----~~L~~L~ls~N~-l~  161 (380)
                      +|.....--+|+.||||++.++..--..+.++++|++|+|+++. +|..-=..++.+    ++|++|||+++. +|
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            34433233579999999999876544567899999999999985 764433345554    379999999974 65

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=94.76  E-value=0.057  Score=48.71  Aligned_cols=79  Identities=20%  Similarity=0.259  Sum_probs=55.8

Q ss_pred             cccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCC---CCccceeeeeCCCceeEEeec
Q 016905          273 FSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHK---NLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       273 ~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~---Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      ....+.+|.|..+.||+.++.||+.+.||+-... .......|..|.+.|..+.-.   -+.+++++    +..++||||
T Consensus        17 v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~-~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~----~~~~lv~e~   91 (288)
T 3f7w_A           17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDD-APALDGLFRAEALGLDWLGRSFGSPVPQVAGW----DDRTLAMEW   91 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTT-CCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE----ETTEEEEEC
T ss_pred             eEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCC-CcchhhHHHHHHHHHHHHHhhCCCCcceEEec----cCceEEEEe
Confidence            3445678999999999999999999999987432 222345688999988877422   23444544    235789999


Q ss_pred             ccCCChh
Q 016905          350 MQNLSVA  356 (380)
Q Consensus       350 ~~~GsL~  356 (380)
                      ++.+...
T Consensus        92 l~~~~~~   98 (288)
T 3f7w_A           92 VDERPPT   98 (288)
T ss_dssp             CCCCCCC
T ss_pred             ecccCCC
Confidence            9876543

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=94.60  E-value=0.042  Score=48.84  Aligned_cols=103  Identities=12%  Similarity=0.074  Sum_probs=67.5

Q ss_pred             hcCcccccccccCCCe-eEEEEEeC-CCcEEEEEEecccCCCchHHHHHHHHHHHhcCc-CCCCccceeeeeCCCceeEE
Q 016905          270 TDNFSESNIIGQGGFG-KVYKGVLS-DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI-HKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g-~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~-H~Niv~l~g~~~~~~~~~lV  346 (380)
                      ..+++.. .+..|..+ .||+.... ++..+.+|+-..    ....++.+|.+.|..+. +--+.++++++..++..++|
T Consensus        24 l~g~~~~-~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~----~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lv   98 (272)
T 4gkh_A           24 LYGYRWA-RDNVGQSGATIYRLYGKPNAPELFLKHGKG----SVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLL   98 (272)
T ss_dssp             HTTCEEE-EEECSSSSCEEEEEECCTTCCCEEEEEEET----HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEE
T ss_pred             ccCCeEE-EccCCCcCCeEEEEEecCCCeEEEEEECCC----CCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEE
Confidence            3344432 34455555 68987764 466788997632    23567889999988774 33466888999888889999


Q ss_pred             eecccCCChhhhcccccc-----cceeeeeecceee
Q 016905          347 YPFMQNLSVAYRLRVSHK-----IYTKIISLSSLHC  377 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~-----~~~~~~aL~yLH~  377 (380)
                      |||+++.++.+.......     ..++...|+-||+
T Consensus        99 me~l~G~~~~~~~~~~~~~~~~~~~~l~~~L~~Lh~  134 (272)
T 4gkh_A           99 TTAIPGKTAFQVLEEYPDSGENIVDALAVFLRRLHS  134 (272)
T ss_dssp             EECCCSEEHHHHHHHCGGGHHHHHHHHHHHHHHHHT
T ss_pred             EEeeCCccccccccCCHHHHHHHHHHHHHHHHHhcC
Confidence            999999888766432211     1224455555664

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.48  E-value=0.05  Score=51.51  Aligned_cols=76  Identities=16%  Similarity=0.146  Sum_probs=36.9

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCC-ccccCCCCCCEEEC
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIP-ATWSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP-~~~~~l~~L~~L~l  155 (380)
                      +|+.+.+..+ ++..-...|.++++|+.++|..+ ++-.-...|.+|.+|+.++|..| ++ .|+ .+|.++.+|+.+++
T Consensus       298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVEL  373 (394)
T ss_dssp             TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEE
T ss_pred             cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEE
Confidence            3444444432 33233344555556666655433 43222344555566666665544 44 332 35555566666555


Q ss_pred             c
Q 016905          156 S  156 (380)
Q Consensus       156 s  156 (380)
                      .
T Consensus       374 p  374 (394)
T 4fs7_A          374 P  374 (394)
T ss_dssp             E
T ss_pred             C
Confidence            3

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=94.31  E-value=0.083  Score=49.51  Aligned_cols=79  Identities=10%  Similarity=0.132  Sum_probs=52.5

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCC-ccccCCCCCCEEEC
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIP-ATWSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP-~~~~~l~~L~~L~l  155 (380)
                      .|..+.+..+ ++..-...|.++.+|+.+.+..+ +.-.-...|..+++|+.+++.+|.++ .|+ .+|.++.+|+.++|
T Consensus       241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~l  317 (379)
T 4h09_A          241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTL  317 (379)
T ss_dssp             SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEEC
T ss_pred             cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCCCCCEEEc
Confidence            5777777654 55444556777778888877644 44233345677788888888777777 443 46777788888877


Q ss_pred             cCC
Q 016905          156 SSN  158 (380)
Q Consensus       156 s~N  158 (380)
                      .+|
T Consensus       318 p~~  320 (379)
T 4h09_A          318 PTA  320 (379)
T ss_dssp             CTT
T ss_pred             Ccc
Confidence            543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=93.77  E-value=0.12  Score=48.91  Aligned_cols=76  Identities=9%  Similarity=0.203  Sum_probs=35.3

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCC-ccccCCCCCCEEEC
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIP-ATWSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP-~~~~~l~~L~~L~l  155 (380)
                      .++.+.+..+-. -.-...|.+++.|+.+.+. +.++-.-...|.+|.+|+.++|..| ++ .|+ .+|.++.+|+.+.+
T Consensus       266 ~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~i  341 (394)
T 4gt6_A          266 YLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAI  341 (394)
T ss_dssp             SCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEE
T ss_pred             cccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEE
Confidence            455555543322 1223345555555555554 2333222234555555555555433 33 232 34555555555555


Q ss_pred             c
Q 016905          156 S  156 (380)
Q Consensus       156 s  156 (380)
                      .
T Consensus       342 p  342 (394)
T 4gt6_A          342 P  342 (394)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=93.31  E-value=0.091  Score=49.67  Aligned_cols=81  Identities=12%  Similarity=0.296  Sum_probs=63.8

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCC-ccccCCCCCCEEEC
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIP-ATWSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP-~~~~~l~~L~~L~l  155 (380)
                      .|+.+.+. +.++..-...|.++++|+.++|..| ++-.-...|.+|.+|+.+.|..+ ++ .|+ .+|.++.+|+.+++
T Consensus       289 ~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~  364 (394)
T 4gt6_A          289 ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEY  364 (394)
T ss_dssp             TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEE
T ss_pred             ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEE
Confidence            68888886 4566555667999999999999865 65344567899999999999755 76 565 57999999999999


Q ss_pred             cCCccc
Q 016905          156 SSNNLT  161 (380)
Q Consensus       156 s~N~l~  161 (380)
                      .+|...
T Consensus       365 ~~~~~~  370 (394)
T 4gt6_A          365 SGSRSQ  370 (394)
T ss_dssp             SSCHHH
T ss_pred             CCceee
Confidence            988643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=93.25  E-value=0.23  Score=46.41  Aligned_cols=64  Identities=20%  Similarity=0.298  Sum_probs=27.9

Q ss_pred             hhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCC-ccccCCCCCCEEECcCCcc
Q 016905           94 PSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIP-ATWSQLSNLKHLDLSSNNL  160 (380)
Q Consensus        94 ~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP-~~~~~l~~L~~L~ls~N~l  160 (380)
                      ..+.++..|+.+.+..+ ++-.-...+.++.+|+.+++..+ ++ .|+ ..|.++.+|+.+++.+|.+
T Consensus       234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i  298 (379)
T 4h09_A          234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAI  298 (379)
T ss_dssp             TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTC
T ss_pred             ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccccccccccccccccccccc
Confidence            34444555555555443 33222233444555555555332 33 222 2344555555555544433

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=93.18  E-value=0.14  Score=48.31  Aligned_cols=77  Identities=13%  Similarity=0.118  Sum_probs=49.8

Q ss_pred             ccccccCCCeeEEEEEeC-CCcEEEEEEecccCC------CchHHHHHHHHHHHhcCcC--CC-CccceeeeeCCCceeE
Q 016905          276 SNIIGQGGFGKVYKGVLS-DNTKVAVKRLQDYYS------PGGEAAFQREVHLISVAIH--KN-LLQLIGYCTTSSERIL  345 (380)
Q Consensus       276 ~~~lg~G~~g~Vy~~~~~-~g~~vavK~l~~~~~------~~~~~~f~~e~~~l~~l~H--~N-iv~l~g~~~~~~~~~l  345 (380)
                      .+.+|.|.++.||++... +++.++||.......      ....+.+..|.+++..+..  +. +.+++.+  ..+..++
T Consensus        35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l  112 (397)
T 2olc_A           35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT  112 (397)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred             EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence            457899999999999763 468899998643211      1123456788888887642  33 3355544  3445689


Q ss_pred             EeecccCCC
Q 016905          346 VYPFMQNLS  354 (380)
Q Consensus       346 V~Ey~~~Gs  354 (380)
                      ||||+++..
T Consensus       113 vmE~l~g~~  121 (397)
T 2olc_A          113 VMEDLSHLK  121 (397)
T ss_dssp             EECCCTTSE
T ss_pred             EEEeCCCcc
Confidence            999998643

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=91.78  E-value=0.022  Score=55.55  Aligned_cols=61  Identities=8%  Similarity=0.026  Sum_probs=17.6

Q ss_pred             ccccccCCCeeEEEEEeCC-CcEEEE------EEecc-cCCCchHHHHHHHHHHHhcCcCCCCccceeeeeC
Q 016905          276 SNIIGQGGFGKVYKGVLSD-NTKVAV------KRLQD-YYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT  339 (380)
Q Consensus       276 ~~~lg~G~~g~Vy~~~~~~-g~~vav------K~l~~-~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~  339 (380)
                      .+.+|   ||.||+|.+.. ..+|||      |...+ ..+....++|.+|..++...+|||+++.+++...
T Consensus       147 ~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~  215 (463)
T 3cxl_A          147 YEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVH  215 (463)
T ss_dssp             TTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEEE
T ss_pred             cccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEEe
Confidence            34565   99999999943 468899      77653 2233345678999999999999999999887653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=91.56  E-value=0.13  Score=48.56  Aligned_cols=73  Identities=11%  Similarity=0.142  Sum_probs=57.2

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEE
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHL  153 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L  153 (380)
                      +|+.++|..+ ++-.-..+|.++++|+.++|..| ++-.-...|.+|++|+.++|..| ++ .+..+|.++++|+.+
T Consensus       321 ~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          321 SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            7899999754 66555678999999999999877 66444567999999999999865 44 456678888887764

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=89.62  E-value=0.25  Score=45.75  Aligned_cols=83  Identities=6%  Similarity=-0.048  Sum_probs=56.9

Q ss_pred             cccc-ccCCCeeEEEEEeC-------CCcEEEEEEecccC--CCchHHHHHHHHHHHhcCc-C--CCCccceeeeeCC--
Q 016905          276 SNII-GQGGFGKVYKGVLS-------DNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAI-H--KNLLQLIGYCTTS--  340 (380)
Q Consensus       276 ~~~l-g~G~~g~Vy~~~~~-------~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~-H--~Niv~l~g~~~~~--  340 (380)
                      .+.| +.|....+|+....       ++..+++|......  .......+.+|.+++..++ +  -.+.++++++...  
T Consensus        25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~  104 (357)
T 3ats_A           25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV  104 (357)
T ss_dssp             EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred             EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence            3556 78888999988764       26678888764321  0101245778888888774 3  3466788887654  


Q ss_pred             -CceeEEeecccCCChhhh
Q 016905          341 -SERILVYPFMQNLSVAYR  358 (380)
Q Consensus       341 -~~~~lV~Ey~~~GsL~~~  358 (380)
                       +..++||||+++..+.+.
T Consensus       105 ~g~~~~v~e~l~G~~l~~~  123 (357)
T 3ats_A          105 LGTPFFLMDYVEGVVPPDV  123 (357)
T ss_dssp             TSSCEEEEECCCCBCCCBT
T ss_pred             cCCceEEEEecCCCChhhc
Confidence             356899999999887754

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=89.31  E-value=0.097  Score=47.51  Aligned_cols=96  Identities=15%  Similarity=0.106  Sum_probs=61.1

Q ss_pred             ccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCc-CCC--CccceeeeeCCC---ceeEEeec
Q 016905          276 SNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI-HKN--LLQLIGYCTTSS---ERILVYPF  349 (380)
Q Consensus       276 ~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~-H~N--iv~l~g~~~~~~---~~~lV~Ey  349 (380)
                      .+.++.|....||+..    ..+++|....   ......+.+|.+++..+. +..  +.+++++....+   ..|+||||
T Consensus        25 i~~~~~G~~n~v~~v~----~~~vlR~~~~---~~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~   97 (304)
T 3sg8_A           25 IEISGEGNDCIAYEIN----RDFIFKFPKH---SRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTK   97 (304)
T ss_dssp             CCEEEECSSEEEEEST----TSEEEEEESS---HHHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEEC
T ss_pred             eEecCCCCcceEEEEC----CEEEEEecCC---cchHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEcc
Confidence            3558899999999753    4588887632   123567899999998873 333  334555443333   35889999


Q ss_pred             ccCCChhhhcccc-------cccceeeeeecceeee
Q 016905          350 MQNLSVAYRLRVS-------HKIYTKIISLSSLHCF  378 (380)
Q Consensus       350 ~~~GsL~~~L~~~-------~~~~~~~~aL~yLH~~  378 (380)
                      +++.++.+.....       ....++...++.||+.
T Consensus        98 i~G~~l~~~~~~~l~~~~~~~~~~~l~~~la~LH~~  133 (304)
T 3sg8_A           98 IKGVPLTPLLLNNLPKQSQNQAAKDLARFLSELHSI  133 (304)
T ss_dssp             CCCEECCHHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cCCeECCccccccCCHHHHHHHHHHHHHHHHHHHcC
Confidence            9998887532211       1223466666777653

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=88.28  E-value=0.8  Score=41.50  Aligned_cols=96  Identities=14%  Similarity=0.124  Sum_probs=63.8

Q ss_pred             ccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCC---CCccceeeee-CCCceeEEeeccc
Q 016905          276 SNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHK---NLLQLIGYCT-TSSERILVYPFMQ  351 (380)
Q Consensus       276 ~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~---Niv~l~g~~~-~~~~~~lV~Ey~~  351 (380)
                      .+.++.|....||+.    |..+++|.-.   .......+.+|.++|..+++.   .+.++++++. ..+..++||||++
T Consensus        24 v~~l~~G~~n~v~~v----g~~~VlR~~~---~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~   96 (306)
T 3tdw_A           24 VESLGEGFRNYAILV----NGDWVFRFPK---SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQ   96 (306)
T ss_dssp             EEEEEECSSEEEEEE----TTTEEEEEES---SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCC
T ss_pred             eeecCCCcceeEEEE----CCEEEEEecC---CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccC
Confidence            345788888899987    5667888742   122356789999999998753   2556777774 4456789999999


Q ss_pred             CCChhhhccc-------ccccceeeeeecceeee
Q 016905          352 NLSVAYRLRV-------SHKIYTKIISLSSLHCF  378 (380)
Q Consensus       352 ~GsL~~~L~~-------~~~~~~~~~aL~yLH~~  378 (380)
                      +..+.+....       .....++...|+.||+.
T Consensus        97 G~~l~~~~~~~l~~~~~~~~~~~lg~~La~LH~~  130 (306)
T 3tdw_A           97 GQILGEDGMAVLPDDAKDRLALQLAEFMNELSAF  130 (306)
T ss_dssp             SEECHHHHHTTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CeECchhhhhhCCHHHHHHHHHHHHHHHHHHhcC
Confidence            9888763211       01123355666666653

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=87.73  E-value=0.3  Score=44.63  Aligned_cols=74  Identities=16%  Similarity=0.237  Sum_probs=41.3

Q ss_pred             cccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcC--CCCcccee------eeeCCCceeEEee
Q 016905          277 NIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIH--KNLLQLIG------YCTTSSERILVYP  348 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H--~Niv~l~g------~~~~~~~~~lV~E  348 (380)
                      +.++.|..+.||+....+| .+++|+...  .   ...+..|.+++..++.  -.+.+++.      +....+..++|||
T Consensus        38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~--~---~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~  111 (346)
T 2q83_A           38 DVIQGNQMALVWKVHTDSG-AVCLKRIHR--P---EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYD  111 (346)
T ss_dssp             EECC----CEEEEEEETTE-EEEEEEECS--C---HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEE
T ss_pred             eeccccccCcEEEEEeCCC-CEEEEecCC--C---HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEE
Confidence            3455567889999987555 488998853  1   2333445555544431  12333332      1123456789999


Q ss_pred             cccCCChh
Q 016905          349 FMQNLSVA  356 (380)
Q Consensus       349 y~~~GsL~  356 (380)
                      |+++.++.
T Consensus       112 ~i~G~~~~  119 (346)
T 2q83_A          112 WIEGRPFE  119 (346)
T ss_dssp             CCCCBCCC
T ss_pred             eecCccCC
Confidence            99987664

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=87.29  E-value=0.22  Score=31.10  Aligned_cols=27  Identities=7%  Similarity=0.082  Sum_probs=12.2

Q ss_pred             EEeechhhHHHHHHHHHHHHHHHHHhh
Q 016905          209 VVASASCGAFVLLSLGALFACRYQKLR  235 (380)
Q Consensus       209 ii~~i~~~~~~ll~~~~~~~~~~~r~k  235 (380)
                      ++++++.++++++++++.++++.|||+
T Consensus        13 IA~gVVgGv~~~~ii~~~~~~~~RRr~   39 (44)
T 2ks1_B           13 IATGMVGALLLLLVVALGIGLFMRRRH   39 (44)
T ss_dssp             STHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             EEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence            444444444444444444444444433

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=84.37  E-value=0.65  Score=44.49  Aligned_cols=95  Identities=14%  Similarity=0.175  Sum_probs=61.0

Q ss_pred             cccccCCCeeEEEEEeCC--------CcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCC-ccceeeeeCCCceeEEe
Q 016905          277 NIIGQGGFGKVYKGVLSD--------NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNL-LQLIGYCTTSSERILVY  347 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~~~--------g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Ni-v~l~g~~~~~~~~~lV~  347 (380)
                      +.|+.|-...+|+...++        +..+.+|+....   .....+.+|..++..+...++ .++++.+..    .+||
T Consensus        79 ~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~---~~~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v~  151 (429)
T 1nw1_A           79 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP---ETESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLE  151 (429)
T ss_dssp             EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC---CCHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEE
T ss_pred             EEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC---CcHHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEEE
Confidence            457778889999998753        478889887321   112456689999888864455 466665532    3899


Q ss_pred             ecccCCChhhh-cccccccceeeeeecceeee
Q 016905          348 PFMQNLSVAYR-LRVSHKIYTKIISLSSLHCF  378 (380)
Q Consensus       348 Ey~~~GsL~~~-L~~~~~~~~~~~aL~yLH~~  378 (380)
                      ||+++.++... +.......++...|+-||+.
T Consensus       152 e~l~G~~l~~~~l~~~~~~~~ia~~La~LH~~  183 (429)
T 1nw1_A          152 EYIPSRPLSCHEISLAHMSTKIAKRVAKVHQL  183 (429)
T ss_dssp             CCCCEEECCTTGGGSHHHHHHHHHHHHHHTTC
T ss_pred             EEeCCcccChhhcCCHHHHHHHHHHHHHHhCC
Confidence            99986565432 22222234566777777764

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=82.98  E-value=0.37  Score=30.00  Aligned_cols=27  Identities=26%  Similarity=0.447  Sum_probs=12.0

Q ss_pred             EEeechhhHHHHHHHHHHHHHHHHHhh
Q 016905          209 VVASASCGAFVLLSLGALFACRYQKLR  235 (380)
Q Consensus       209 ii~~i~~~~~~ll~~~~~~~~~~~r~k  235 (380)
                      ++++++.+++++++++..++++.|||+
T Consensus        12 IA~gVVgGv~~v~ii~~~~~~~~RRRr   38 (44)
T 2l2t_A           12 IAAGVIGGLFILVIVGLTFAVYVRRKS   38 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEeehHHHHHHHHHHHHHHHHhhhhh
Confidence            444444444444444444444444433

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=81.32  E-value=0.87  Score=42.87  Aligned_cols=96  Identities=13%  Similarity=0.150  Sum_probs=56.7

Q ss_pred             cccccCCCeeEEEEEeC--------CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCC-ccceeeeeCCCceeEEe
Q 016905          277 NIIGQGGFGKVYKGVLS--------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNL-LQLIGYCTTSSERILVY  347 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~~--------~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Ni-v~l~g~~~~~~~~~lV~  347 (380)
                      +.+..|-...+|+...+        ++..+.+|+....  ......+.+|.+++..+.-..+ .++++++..    -+||
T Consensus        56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~--~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v~  129 (379)
T 3feg_A           56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI--LQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRLE  129 (379)
T ss_dssp             EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC-----CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEEE
T ss_pred             EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc--cchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccEE
Confidence            34556777788998874        2468888876321  2235667789999887753333 466666543    2899


Q ss_pred             ecccCCChhh-hcccccccceeeeeecceeee
Q 016905          348 PFMQNLSVAY-RLRVSHKIYTKIISLSSLHCF  378 (380)
Q Consensus       348 Ey~~~GsL~~-~L~~~~~~~~~~~aL~yLH~~  378 (380)
                      ||+++..|.. -+........++..|+-||+.
T Consensus       130 e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~  161 (379)
T 3feg_A          130 QYIPSRPLKTQELREPVLSAAIATKMAQFHGM  161 (379)
T ss_dssp             ECCSEEECCGGGGGCHHHHHHHHHHHHHHHTC
T ss_pred             EEecCccCChhHhCCHHHHHHHHHHHHHHhCC
Confidence            9999876642 122222234577788888865

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=81.20  E-value=1  Score=40.84  Aligned_cols=76  Identities=11%  Similarity=0.079  Sum_probs=49.0

Q ss_pred             ccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCC--Cccceee-----eeCCCceeEEeecc
Q 016905          278 IIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKN--LLQLIGY-----CTTSSERILVYPFM  350 (380)
Q Consensus       278 ~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~N--iv~l~g~-----~~~~~~~~lV~Ey~  350 (380)
                      .++ |....||+...++|+.+++|......  .....+..|.+++..++...  +++++..     ....+..+++|||+
T Consensus        33 ~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~--~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i  109 (328)
T 1zyl_A           33 PLN-SYENRVYQFQDEDRRRFVVKFYRPER--WTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSV  109 (328)
T ss_dssp             EEC-CSSSEEEEECCTTCCCEEEEEECTTT--SCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECC
T ss_pred             eec-CcccceEEEEcCCCCEEEEEEcCCCC--CCHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEec
Confidence            355 77789999877778789999885321  13456677888877764322  3444443     11134567899999


Q ss_pred             cCCChh
Q 016905          351 QNLSVA  356 (380)
Q Consensus       351 ~~GsL~  356 (380)
                      ++..+.
T Consensus       110 ~G~~~~  115 (328)
T 1zyl_A          110 GGRQFE  115 (328)
T ss_dssp             CCEECC
T ss_pred             CCCCCC
Confidence            886654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	380
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	6e-21
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	7e-20
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	7e-19
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	2e-18
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	3e-18
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	1e-17
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	2e-17
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	2e-17
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	3e-17
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	3e-17
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	3e-17
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	2e-16
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	3e-16
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	3e-16
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	4e-16
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	5e-16
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	6e-16
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	7e-16
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	7e-16
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	1e-15
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	3e-15
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	5e-15
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	2e-14
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	2e-14
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	3e-14
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	4e-14
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	5e-14
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	6e-14
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	8e-14
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	1e-13
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	1e-13
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	1e-13
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	2e-13
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-13
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	3e-13
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	3e-13
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	3e-13
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	4e-13
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	4e-13
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	4e-13
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	5e-13
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	5e-13
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	1e-12
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	2e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-06
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	2e-11
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	3e-11
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	5e-11
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	7e-11
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	8e-11
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	1e-10
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	1e-10
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	1e-10
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	1e-10
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	3e-10
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	4e-10
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	5e-10
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	2e-09
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	3e-09
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	8e-09
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	1e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-04
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	3e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.004

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.8 bits (222), Expect = 6e-21
 Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 13/120 (10%)

Query: 261 FSCRELQLATDNFSES---------NIIGQGGFGKVYKGVLSDNTK----VAVKRLQDYY 307
           F+  +   A   F++           +IG G FG+V  G L    K    VA+K L+  Y
Sbjct: 7   FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY 66

Query: 308 SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYT 367
           +      F  E  ++    H N++ L G  T S+  +++  FM+N S+   LR +   +T
Sbjct: 67  TEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFT 126

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.0 bits (215), Expect = 7e-20
 Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 1/96 (1%)

Query: 266 LQLATDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVHLISV 324
           ++L  D+F + + +G G  G V+K         +A K +     P       RE+ ++  
Sbjct: 1   MELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHE 60

Query: 325 AIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
                ++   G   +  E  +    M   S+   L+
Sbjct: 61  CNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK 96

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.2 bits (205), Expect = 7e-19
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 2/97 (2%)

Query: 271 DNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNL 330
              +    IG G FG V+ G   +  KVA+K +++      E  F  E  ++    H  L
Sbjct: 5   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIRE--GAMSEEDFIEEAEVMMKLSHPKL 62

Query: 331 LQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYT 367
           +QL G C   +   LV+ FM++  ++  LR    ++ 
Sbjct: 63  VQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFA 99

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.1 bits (202), Expect = 2e-18
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 264 RELQLATDNFSESNI-IGQGGFGKVYKGVL---SDNTKVAVKRLQDYYSPGGEAAFQREV 319
           ++L L  DN   ++I +G G FG V +GV         VA+K L+            RE 
Sbjct: 1   KKLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREA 60

Query: 320 HLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
            ++    +  +++LIG C      +LV        +   L 
Sbjct: 61  QIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGPLHKFLV 100

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.3 bits (200), Expect = 3e-18
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 2/97 (2%)

Query: 271 DNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNL 330
            + +    +G G FG V  G       VA+K +++      E  F  E  ++    H+ L
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKE--GSMSEDEFIEEAKVMMNLSHEKL 61

Query: 331 LQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYT 367
           +QL G CT      ++  +M N  +   LR     + 
Sbjct: 62  VQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQ 98

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.1 bits (197), Expect = 1e-17
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 271 DNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNL 330
           +       +G G FG+V+ G  + +TKVAVK L+         AF  E +L+    H+ L
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQ--GSMSPDAFLAEANLMKQLQHQRL 70

Query: 331 LQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKI 365
           ++L     T     ++  +M+N S+   L+    I
Sbjct: 71  VRLYAVV-TQEPIYIITEYMENGSLVDFLKTPSGI 104

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (195), Expect = 2e-17
 Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 5/106 (4%)

Query: 267 QLATDNFSESNIIGQGGFGKVYKGVLSDNT-----KVAVKRLQDYYSPGGEAAFQREVHL 321
           ++     +   +IG G FG+VYKG+L  ++      VA+K L+  Y+      F  E  +
Sbjct: 3   EIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGI 62

Query: 322 ISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYT 367
           +    H N+++L G  +     +++  +M+N ++   LR     ++
Sbjct: 63  MGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFS 108

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.8 bits (196), Expect = 2e-17
 Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 4/102 (3%)

Query: 271 DNFSESNIIGQGGFGKVYKGVLSDN---TKVAVKRLQDYYSPGGEAAFQREVHLIS-VAI 326
           ++    ++IG+G FG+V K  +  +      A+KR+++Y S      F  E+ ++  +  
Sbjct: 10  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 69

Query: 327 HKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTK 368
           H N++ L+G C       L   +  + ++   LR S  + T 
Sbjct: 70  HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETD 111

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (194), Expect = 3e-17
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 6/118 (5%)

Query: 265 ELQLATDNFSESNIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQRE 318
           E ++A +  + S  +GQG FG VY+GV          T+VA+K + +  S      F  E
Sbjct: 14  EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNE 73

Query: 319 VHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKIISLSSLH 376
             ++      ++++L+G  +     +++   M    +   LR           L+   
Sbjct: 74  ASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPS 131

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 79.1 bits (194), Expect = 3e-17
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 6/102 (5%)

Query: 265 ELQLATDNFSESNIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQRE 318
            L+   +N      IG+G FG+V++            T VAVK L++  S   +A FQRE
Sbjct: 7   SLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQRE 66

Query: 319 VHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
             L++   + N+++L+G C       L++ +M    +   LR
Sbjct: 67  AALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLR 108

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (194), Expect = 3e-17
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 7/97 (7%)

Query: 271 DNFSESNIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQREVHLIS- 323
           +  S    +G G FGKV +              VAVK L+         A   E+ ++S 
Sbjct: 23  NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSY 82

Query: 324 VAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
           +  H N++ L+G CT     +++  +     +   LR
Sbjct: 83  LGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLR 119

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.3 bits (187), Expect = 2e-16
 Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 3/107 (2%)

Query: 259 RRFSCRELQLATDNFSESNIIGQGGFGKVYKGVLSD-NTKVAVKRLQDYYSPGGEAAFQR 317
              +  + ++   + +  + +G G +G+VY+GV    +  VAVK L++         F +
Sbjct: 5   SSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE--DTMEVEEFLK 62

Query: 318 EVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHK 364
           E  ++    H NL+QL+G CT      ++  FM   ++   LR  ++
Sbjct: 63  EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNR 109

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.7 bits (188), Expect = 3e-16
 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 271 DNFSESNIIGQGGFGKVYKGVLSDNTK------VAVKRLQDYYSPGGEAAFQREVHLIS- 323
           +N     ++G G FGKV        +K      VAVK L++        A   E+ +++ 
Sbjct: 37  ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQ 96

Query: 324 VAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYT 367
           +  H+N++ L+G CT S    L++ +     +   LR   + ++
Sbjct: 97  LGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFS 140

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (185), Expect = 3e-16
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 271 DNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNL 330
                   IG+G FG V  G      KVAVK +++        AF  E  +++   H NL
Sbjct: 7   KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKN---DATAQAFLAEASVMTQLRHSNL 62

Query: 331 LQLIGYCTTSSERI-LVYPFMQNLSVAYRLR 360
           +QL+G        + +V  +M   S+   LR
Sbjct: 63  VQLLGVIVEEKGGLYIVTEYMAKGSLVDYLR 93

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.8 bits (186), Expect = 4e-16
 Identities = 16/98 (16%), Positives = 38/98 (38%), Gaps = 1/98 (1%)

Query: 264 RELQLATDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVHLI 322
           ++ +   D +   +++G G F +V           VA+K +      G E + + E+ ++
Sbjct: 2   KQAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVL 61

Query: 323 SVAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
               H N++ L     +     L+   +    +  R+ 
Sbjct: 62  HKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIV 99

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.0 bits (186), Expect = 5e-16
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 7/88 (7%)

Query: 272 NFSESNIIGQGGFGKVYKGVLSDNTK----VAVKRLQDYYSPGGEAAFQREVHLISVAIH 327
           +F+E  +IG+G FG VY G L DN       AVK L      G  + F  E  ++    H
Sbjct: 30  HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSH 87

Query: 328 KNLLQLIGYCT-TSSERILVYPFMQNLS 354
            N+L L+G C  +    ++V P+M++  
Sbjct: 88  PNVLSLLGICLRSEGSPLVVLPYMKHGD 115

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.1 bits (184), Expect = 6e-16
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 271 DNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNL 330
           ++      +GQG FG+V+ G  +  T+VA+K L+         AF +E  ++    H+ L
Sbjct: 17  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKP--GTMSPEAFLQEAQVMKKLRHEKL 74

Query: 331 LQLIGYCTTSSERILVYPFMQN 352
           +QL    +      +V  +M  
Sbjct: 75  VQLYAVVSE-EPIYIVTEYMSK 95

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.7 bits (183), Expect = 7e-16
 Identities = 15/91 (16%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 271 DNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKN 329
           +++     +G+G +G+V   V       VAVK +    +       ++E+ +  +  H+N
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 64

Query: 330 LLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
           +++  G+    + + L   +     +  R+ 
Sbjct: 65  VVKFYGHRREGNIQYLFLEYCSGGELFDRIE 95

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (183), Expect = 7e-16
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 4/98 (4%)

Query: 271 DNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQ-DYYSPGGEAAFQREVHLISVAIHKN 329
              +    IG G FG VYKG       VAVK L     +P    AF+ EV ++    H N
Sbjct: 8   GQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN 65

Query: 330 LLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYT 367
           +L  +GY  T+ +  +V  + +  S+ + L +    + 
Sbjct: 66  ILLFMGYS-TAPQLAIVTQWCEGSSLYHHLHIIETKFE 102

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 74.3 bits (182), Expect = 1e-15
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 3/94 (3%)

Query: 270 TDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRL--QDYYSPGGEAAFQREVHLISVAI 326
              FS+   IG G FG VY    + ++  VA+K++      S        +EV  +    
Sbjct: 14  EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLR 73

Query: 327 HKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
           H N +Q  G         LV  +    +      
Sbjct: 74  HPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEV 107

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (180), Expect = 3e-15
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 271 DNFSESNIIGQGGFGKVYKGVLSDN-----TKVAVKRLQDYYSPGGEAAFQREVHLISVA 325
             F +  ++G G FG VYKG+           VA+K L++  SP        E ++++  
Sbjct: 9   TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 68

Query: 326 IHKNLLQLIGYCTTSSERILVYPFM 350
            + ++ +L+G C TS+ +++     
Sbjct: 69  DNPHVCRLLGICLTSTVQLITQLMP 93

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.2 bits (179), Expect = 5e-15
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 271 DNFSESNIIGQGGFGKVYKGVLSD-NTKVAVKRL--QDYYSPGGEAAFQREVHLISV--- 324
           ++FS   IIG+GGFG+VY    +D     A+K L  +      GE     E  ++S+   
Sbjct: 4   NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 63

Query: 325 AIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
                ++ +     T  +   +   M    + Y L 
Sbjct: 64  GDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLS 99

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 71.1 bits (173), Expect = 2e-14
 Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 1/101 (0%)

Query: 271 DNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQ-DYYSPGGEAAFQREVHLISVAIHKN 329
           + +     IG+G +G VYK   +     A+K+++ +    G  +   RE+ ++    H N
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSN 61

Query: 330 LLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYTKII 370
           +++L     T    +LV+  +              + +   
Sbjct: 62  IVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTA 102

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 71.6 bits (175), Expect = 2e-14
 Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 271 DNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKN 329
           D++     +G G FG V++    +     A K +        +   ++E+  +SV  H  
Sbjct: 26  DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTP-HESDKETVRKEIQTMSVLRHPT 84

Query: 330 LLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYT 367
           L+ L       +E +++Y FM    +  ++   H   +
Sbjct: 85  LVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMS 122

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (171), Expect = 3e-14
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 3/98 (3%)

Query: 271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRL--QDYYSPGGEAAFQREVHLISVAIH 327
           ++F     +G+G FG VY          +A+K L        G E   +REV + S   H
Sbjct: 6   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 65

Query: 328 KNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKI 365
            N+L+L GY   ++   L+  +    +V   L+   K 
Sbjct: 66  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF 103

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.7 bits (170), Expect = 4e-14
 Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 3/92 (3%)

Query: 271 DNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRL--QDYYSPGGEAAFQREVHLISVAIH 327
           ++F    I+G+G F  V     L+ + + A+K L  +            RE  ++S   H
Sbjct: 8   EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 67

Query: 328 KNLLQLIGYCTTSSERILVYPFMQNLSVAYRL 359
              ++L        +      + +N  +   +
Sbjct: 68  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYI 99

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (171), Expect = 5e-14
 Identities = 12/82 (14%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 270 TDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHK 328
              ++  + IG+G +G V       +  +VA+K++  +          RE+ ++    H+
Sbjct: 7   GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHE 66

Query: 329 NLLQLIGYCTTSSERILVYPFM 350
           N++ +       +   +   ++
Sbjct: 67  NIIGINDIIRAPTIEQMKDVYL 88

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 70.1 bits (171), Expect = 6e-14
 Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 2/91 (2%)

Query: 271 DNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKN 329
           D +     +G G FG V++ V  +       K +     P  +   + E+ +++   H  
Sbjct: 29  DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINT-PYPLDKYTVKNEISIMNQLHHPK 87

Query: 330 LLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
           L+ L        E +L+  F+    +  R+ 
Sbjct: 88  LINLHDAFEDKYEMVLILEFLSGGELFDRIA 118

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.0 bits (168), Expect = 8e-14
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 275 ESNIIGQGGFGKVYKGVLSD---NTKVAVKRLQ-DYYSPGGEAAFQREVHLISVAIHKNL 330
           E   +G G FG V KG          VAVK L+ +   P  +     E +++    +  +
Sbjct: 11  EDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYI 70

Query: 331 LQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKI 365
           +++IG C   S  +LV    +   +   L+ +  +
Sbjct: 71  VRMIGICEAES-WMLVMEMAELGPLNKYLQQNRHV 104

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (166), Expect = 1e-13
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 271 DNFSESNIIGQGGFGKVYKGVLSDN----TKVAVKRLQDYYSPGGEAAFQREVHLISVAI 326
           +       IG+G FG V++G+          VA+K  ++  S      F +E   +    
Sbjct: 7   ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 66

Query: 327 HKNLLQLIGYCTTSSERILVYPFMQN 352
           H ++++LIG   T +   ++      
Sbjct: 67  HPHIVKLIGVI-TENPVWIIMELCTL 91

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (166), Expect = 1e-13
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 271 DNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQ-DYYSPGGEAAFQREVHLISVAIHK 328
           +NF +   IG+G +G VYK         VA+K+++ D  + G  +   RE+ L+    H 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61

Query: 329 NLLQLIGYCTTSSERILVYPFM 350
           N+++L+    T ++  LV+ F+
Sbjct: 62  NIVKLLDVIHTENKLYLVFEFL 83

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.5 bits (167), Expect = 1e-13
 Identities = 13/84 (15%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 270 TDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHK 328
              ++    IGQG  G VY  + ++   +VA++++ +      +     E+ ++    + 
Sbjct: 19  KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQM-NLQQQPKKELIINEILVMRENKNP 77

Query: 329 NLLQLIGYCTTSSERILVYPFMQN 352
           N++  +       E  +V  ++  
Sbjct: 78  NIVNYLDSYLVGDELWVVMEYLAG 101

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (166), Expect = 2e-13
 Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 9/103 (8%)

Query: 271 DNFSESNIIGQGGFGKVYKGVL--------SDNTKVAVKRLQDYYSPGGEAAFQREVHLI 322
           D       +G+G FG+V             +  TKVAVK L+   +    +    E+ ++
Sbjct: 13  DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMM 72

Query: 323 S-VAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHK 364
             +  HKN++ L+G CT      ++  +    ++   L+    
Sbjct: 73  KMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRP 115

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (165), Expect = 2e-13
 Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 271 DNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQ-DYYSPGGEAAFQREVHLISVAIHK 328
           +++     IG G +G+  K    SD   +  K L     +   +     EV+L+    H 
Sbjct: 4   EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHP 63

Query: 329 NLLQLIGYCTTSSERI--LVYPFMQNLSVAYRLRVSHK 364
           N+++        +     +V  + +   +A  +    K
Sbjct: 64  NIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTK 101

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (163), Expect = 3e-13
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 271 DNFSESNIIGQGGFGKVYKGVLSDNTK----VAVKRL--QDYYSPGGEAAFQREVHLISV 324
            +      +G G FG V +G     +     VAVK L       P     F REV+ +  
Sbjct: 8   KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 67

Query: 325 AIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYR 358
             H+NL++L G   T   ++ V       S+  R
Sbjct: 68  LDHRNLIRLYGVVLTPPMKM-VTELAPLGSLLDR 100

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 67.1 bits (163), Expect = 3e-13
 Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 7/103 (6%)

Query: 270 TDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRL--QDYYSPGGEAAFQREVHLISVAI 326
           +D +    I+G GG  +V+    L  +  VAVK L       P     F+RE    +   
Sbjct: 6   SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 65

Query: 327 HKNLLQLIGYCTTSSERI----LVYPFMQNLSVAYRLRVSHKI 365
           H  ++ +       +       +V  ++  +++   +     +
Sbjct: 66  HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPM 108

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (163), Expect = 3e-13
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 277 NIIGQGGFGKVYKGVLSD-NTKVAVKRLQD-YYSPGGEAAFQREVHLISVAIHKNLLQLI 334
             IG+G F  VYKG+ ++   +VA   LQD   +      F+ E  ++    H N+++  
Sbjct: 15  IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFY 74

Query: 335 GYCTTSSER----ILVYPFMQNLSVAYRLR 360
               ++ +     +LV   M + ++   L+
Sbjct: 75  DSWESTVKGKKCIVLVTELMTSGTLKTYLK 104

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 4e-13
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 277 NIIGQGGFGKVYKGV-LSDNTKVAVKRL----QDYYSPGGEAAFQREVHLISVAIHKNLL 331
           + +G+G F  VYK    + N  VA+K++    +     G      RE+ L+    H N++
Sbjct: 4   DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII 63

Query: 332 QLIGYCTTSSERILVYPFMQN 352
            L+      S   LV+ FM+ 
Sbjct: 64  GLLDAFGHKSNISLVFDFMET 84

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (163), Expect = 4e-13
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 4/99 (4%)

Query: 271 DNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRL--QDYYSPGGEAAFQREVHLISVAI- 326
           ++F    ++G+G FGKV+       N   A+K L                E  ++S+A  
Sbjct: 2   EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWE 61

Query: 327 HKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKI 365
           H  L  +     T      V  ++    + Y ++  HK 
Sbjct: 62  HPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKF 100

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.0 bits (163), Expect = 4e-13
 Identities = 18/91 (19%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 271 DNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKN 329
           + +  +  +G+G FG V++ V  S       K ++       +   ++E+ ++++A H+N
Sbjct: 5   EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVK--VKGTDQVLVKKEISILNIARHRN 62

Query: 330 LLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
           +L L     +  E ++++ F+  L +  R+ 
Sbjct: 63  ILHLHESFESMEELVMIFEFISGLDIFERIN 93

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (162), Expect = 5e-13
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 2/99 (2%)

Query: 270 TDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHK 328
            D +     +G G FGKVYK      +   A K + D  S      +  E+ +++   H 
Sbjct: 11  EDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVI-DTKSEEELEDYMVEIDILASCDHP 69

Query: 329 NLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYT 367
           N+++L+      +   ++  F    +V   +    +  T
Sbjct: 70  NIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLT 108

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 5e-13
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 7/86 (8%)

Query: 279 IGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCT 338
           IG+G FG+V++G      +VAVK              + E++   +  H+N+L  I    
Sbjct: 11  IGKGRFGEVWRGKW-RGEEVAVKIFSS--REERSWFREAEIYQTVMLRHENILGFIAADN 67

Query: 339 ----TSSERILVYPFMQNLSVAYRLR 360
               T ++  LV  + ++ S+   L 
Sbjct: 68  KDNGTWTQLWLVSDYHEHGSLFDYLN 93

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 1e-12
 Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKN 329
            +++++ +IG G FG VY+  L      VA+K++        +    RE+ ++    H N
Sbjct: 20  VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQ-----DKRFKNRELQIMRKLDHCN 74

Query: 330 LLQLIGYCTTSSER------ILVYPFMQNLSVAYRLRVSHK 364
           +++L  +  +S E+       LV  ++           S  
Sbjct: 75  IVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRA 115

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (157), Expect = 2e-12
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 6/88 (6%)

Query: 271 DNFSESNIIGQGGFGKVYKGV-LSDNTKVAVK-----RLQDYYSPGGEAAFQREVHLISV 324
           D +     +G G F  V K    S   + A K     R +           +REV ++  
Sbjct: 10  DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKE 69

Query: 325 AIHKNLLQLIGYCTTSSERILVYPFMQN 352
             H N++ L       ++ IL+   +  
Sbjct: 70  IQHPNVITLHEVYENKTDVILILELVAG 97

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.8 bits (159), Expect = 2e-12
 Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 6/115 (5%)

Query: 44  LKALNDTHGQFTDWNDHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLA 103
           +  ++   G     N                  N+  LTL  N  S      ++ L  L 
Sbjct: 275 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 332

Query: 104 SLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSN 158
            L   +N +S      L ++T++  L+  +N+ S   P   + L+ +  L L+  
Sbjct: 333 RLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.8 bits (146), Expect = 6e-11
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 99  LKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSN 158
           LK L  L L  N++S   P  + S+T LQ L  ANNK S    ++ + L+N+  L    N
Sbjct: 306 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHN 361

Query: 159 NLTGRIPMQ 167
            ++   P+ 
Sbjct: 362 QISDLTPLA 370

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.2 bits (116), Expect = 4e-07
 Identities = 34/136 (25%), Positives = 49/136 (36%), Gaps = 6/136 (4%)

Query: 57  WNDHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTL 116
                 S   S   V  +  N+ SL   +N  S      I     L  L L  N L    
Sbjct: 178 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD-- 233

Query: 117 PDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNF 176
              L S+T+L  L+LANN+ S   P   S L+ L  L L +N ++   P+   +  T   
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLE 291

Query: 177 TGTHLICGSSLEQPCM 192
              + +   S      
Sbjct: 292 LNENQLEDISPISNLK 307

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.2 bits (103), Expect = 2e-05
 Identities = 28/118 (23%), Positives = 43/118 (36%), Gaps = 24/118 (20%)

Query: 73  CRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLA 132
               N+  L+L  N        ++  L  L  L+L +N +S   P  L  +T L  L L 
Sbjct: 216 GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 271

Query: 133 NNKFSGSIP--------------------ATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
            N+ S   P                    +  S L NL +L L  NN++   P+   +
Sbjct: 272 ANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLT 329

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 99  LKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSN 158
           L       L   +++ T+      +  + +L         SI      L+NL  ++ S+N
Sbjct: 21  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDGV-EYLNNLTQINFSNN 76

Query: 159 NLTGRIPMQ 167
            LT   P++
Sbjct: 77  QLTDITPLK 85

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.7 bits (157), Expect = 2e-12
 Identities = 13/85 (15%), Positives = 34/85 (40%), Gaps = 3/85 (3%)

Query: 271 DNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRL--QDYYSPGGEAAFQREVHLISVAIH 327
            +F     +G G FG+V+      +    A+K L  +             E  ++S+  H
Sbjct: 4   QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTH 63

Query: 328 KNLLQLIGYCTTSSERILVYPFMQN 352
             ++++ G    + +  ++  +++ 
Sbjct: 64  PFIIRMWGTFQDAQQIFMIMDYIEG 88

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.0 bits (154), Expect = 5e-12
 Identities = 23/115 (20%), Positives = 38/115 (33%), Gaps = 1/115 (0%)

Query: 51  HGQFTDWNDHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDN 110
                 + D   +     + V   +         +          +   K L  L+L++N
Sbjct: 195 ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN 254

Query: 111 DLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIP 165
            + GTLP  L  +  L SLN++ N   G IP     L        ++N      P
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.9 bits (146), Expect = 5e-11
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 123 MTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIP--MQLFSVATFNFTGTH 180
             +L  L+L NN+  G++P   +QL  L  L++S NNL G IP    L       +    
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302

Query: 181 LICGSSLEQPC 191
            +CGS L   C
Sbjct: 303 CLCGSPLP-AC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 24/128 (18%), Positives = 48/128 (37%), Gaps = 26/128 (20%)

Query: 36  EGEALIEVLKALNDTHGQFTDWNDHFVSPC-FSWSHVTCRNGNVISLTLGSNGFSGKISP 94
           + +AL+++ K L +     + W       C  +W  V C                     
Sbjct: 7   DKQALLQIKKDLGN-PTTLSSWLPT-TDCCNRTWLGVLCDTD------------------ 46

Query: 95  SITKLKFLASLELQDNDLSG--TLPDFLGSMTHLQSLNLANN-KFSGSIPATWSQLSNLK 151
             T+   + +L+L   +L     +P  L ++ +L  L +       G IP   ++L+ L 
Sbjct: 47  --TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 152 HLDLSSNN 159
           +L ++  N
Sbjct: 105 YLYITHTN 112

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (150), Expect = 2e-11
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 271 DNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRL-QDYYSPGGEAAFQREVHLISVAIHK 328
             + +   +G G +G V   V      KVA+K+L + + S        RE+ L+    H+
Sbjct: 18  AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHE 77

Query: 329 NLLQLIGYCTTSS------ERILVYPFMQNL 353
           N++ L+   T         +  LV PFM   
Sbjct: 78  NVIGLLDVFTPDETLDDFTDFYLVMPFMGTD 108

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 60.9 bits (147), Expect = 3e-11
 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 10/100 (10%)

Query: 271 DNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRL--------QDYYSPGGEAAFQREVHL 321
           +N+    I+G+G    V + +      + AVK +                  A  +EV +
Sbjct: 3   ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDI 62

Query: 322 IS-VAIHKNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
           +  V+ H N++QL     T++   LV+  M+   +   L 
Sbjct: 63  LRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLT 102

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (147), Expect = 5e-11
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 270 TDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRL-QDYYSPGGEAAFQREVHLISVAIH 327
            + +   + +G G +G V          +VAVK+L + + S        RE+ L+    H
Sbjct: 17  PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKH 76

Query: 328 KNLLQLIGYCTTS 340
           +N++ L+   T +
Sbjct: 77  ENVIGLLDVFTPA 89

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 7e-11
 Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 14/118 (11%)

Query: 263 CRELQLATDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRL-QDYYSPGGEAAFQREVH 320
           C E+      + +   IGQG FG+V+K        KVA+K++  +    G      RE+ 
Sbjct: 6   CDEV----SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIK 61

Query: 321 LISVAIHKNLLQLIGYCTTSSERI--------LVYPFMQNLSVAYRLRVSHKIYTKII 370
           ++ +  H+N++ LI  C T +           LV+ F ++        V  K     I
Sbjct: 62  ILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEI 119

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (144), Expect = 8e-11
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 8/98 (8%)

Query: 278 IIGQGGFGKVYKGV-LSDNTKVAVKRL-----QDYYSPGGEAAFQREVHLIS--VAIHKN 329
           ++G GGFG VY G+ +SDN  VA+K +      D+           EV L+    +    
Sbjct: 11  LLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG 70

Query: 330 LLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKIYT 367
           +++L+ +       +L+    + +   +          
Sbjct: 71  VIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQ 108

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 60.2 bits (145), Expect = 1e-10
 Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 8/94 (8%)

Query: 271 DNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVHLIS-VAIHK 328
           D++     +G+G + +V++ + +++N KV VK L     P  +   +RE+ ++  +    
Sbjct: 35  DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKIL----KPVKKKKIKREIKILENLRGGP 90

Query: 329 NLLQLIGYCTTSSER--ILVYPFMQNLSVAYRLR 360
           N++ L         R   LV+  + N       +
Sbjct: 91  NIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQ 124

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (144), Expect = 1e-10
 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 8/98 (8%)

Query: 271 DNFSESNIIGQGGFGKVYKGV------LSDNTKVAVKRLQDYYSPGGEAAFQREVHLISV 324
           D       +G+G FG+V +         +    VAVK L++  +     A   E+ ++  
Sbjct: 13  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 72

Query: 325 AIH-KNLLQLIGYCTTSSERI-LVYPFMQNLSVAYRLR 360
             H  N++ L+G CT     + ++  F +  +++  LR
Sbjct: 73  IGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLR 110

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 1e-10
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 2/84 (2%)

Query: 271 DNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQ-DYYSPGGEAAFQREVHLISVAIHK 328
             + +   IG+G +G V+K      +  VA+KR++ D    G  ++  RE+ L+    HK
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHK 61

Query: 329 NLLQLIGYCTTSSERILVYPFMQN 352
           N+++L     +  +  LV+ F   
Sbjct: 62  NIVRLHDVLHSDKKLTLVFEFCDQ 85

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 1e-10
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 10/95 (10%)

Query: 262 SCRELQLATDNFSESNIIGQGGFGKVYKG--VLSDNTKVAVKRL-QDYYSPGGEAAFQRE 318
            CR    A   +     IG+G +GKV+K   + +    VA+KR+       G   +  RE
Sbjct: 2   LCR----ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIRE 57

Query: 319 VHL---ISVAIHKNLLQLIGYCTTSSERILVYPFM 350
           V +   +    H N+++L   CT S         +
Sbjct: 58  VAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTL 92

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (141), Expect = 3e-10
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 12/89 (13%)

Query: 278 IIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI-HKNLLQLIG 335
           ++G G  GKV +        K A+K LQD          +REV L   A    ++++++ 
Sbjct: 19  VLGLGINGKVLQIFNKRTQEKFALKMLQD------CPKARREVELHWRASQCPHIVRIVD 72

Query: 336 YCTTSSER----ILVYPFMQNLSVAYRLR 360
                       ++V   +    +  R++
Sbjct: 73  VYENLYAGRKCLLIVMECLDGGELFSRIQ 101

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 4e-10
 Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 3/93 (3%)

Query: 271 DNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRL--QDYYSPGGEAAFQREVHLISVAIH 327
           ++F    ++G+G FGKV      +     A+K L  +   +    A    E  ++    H
Sbjct: 5   NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRH 64

Query: 328 KNLLQLIGYCTTSSERILVYPFMQNLSVAYRLR 360
             L  L     T      V  +     + + L 
Sbjct: 65  PFLTALKYAFQTHDRLCFVMEYANGGELFFHLS 97

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.5 bits (138), Expect = 5e-10
 Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 6/108 (5%)

Query: 265 ELQLATDNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVHLIS 323
           EL++  + +     IG G FG +Y G  ++   +VA+K                E  +  
Sbjct: 2   ELRVG-NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLEC---VKTKHPQLHIESKIYK 57

Query: 324 VAIHKNLLQLIGYCTTSSER-ILVYPFMQNLSVAYRLRVSHKIYTKII 370
           +      +  I +C    +  ++V   +           S K   K +
Sbjct: 58  MMQGGVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTV 105

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.0 bits (134), Expect = 2e-09
 Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 3/92 (3%)

Query: 271 DNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRL--QDYYSPGGEAAFQREVHLISVAIH 327
           D F     +G G FG+V            A+K L  Q             E  ++     
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100

Query: 328 KNLLQLIGYCTTSSERILVYPFMQNLSVAYRL 359
             L++L      +S   +V  ++    +   L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL 132

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 3e-09
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 271 DNFSESNIIGQGGFGKVYKGV-LSDNTKVAVKRL-QDYYSPGGEAAFQREVHLISVAIHK 328
             +     IG G  G V        +  VA+K+L + + +        RE+ L+    HK
Sbjct: 17  KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHK 76

Query: 329 NLLQLIGYCTT 339
           N++ L+   T 
Sbjct: 77  NIISLLNVFTP 87

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 52.5 bits (125), Expect = 8e-09
 Identities = 11/119 (9%), Positives = 31/119 (26%), Gaps = 15/119 (12%)

Query: 277 NIIGQGGFGKVYKGVLSDNTKVAVK---------RLQDYYSPGGEAAFQREVHLISVAIH 327
            ++G+G    V+        +  VK         +        G+  F       +    
Sbjct: 6   KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEF 65

Query: 328 KNLLQLIGYCTT----SSERILVYPFMQNLSVAYRLRVSHKIYTKII--SLSSLHCFSL 380
           + L +L G             ++   +    +      +      +I   ++  +   +
Sbjct: 66  RALQKLQGLAVPKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHRGI 124

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 53.7 bits (128), Expect = 1e-08
 Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 4/90 (4%)

Query: 279 IGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYC 337
           IG+G FG +++G  L +N +VA+K              + E     +      +  + Y 
Sbjct: 13  IGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD---APQLRDEYRTYKLLAGCTGIPNVYYF 69

Query: 338 TTSSERILVYPFMQNLSVAYRLRVSHKIYT 367
                  ++   +   S+   L +  + ++
Sbjct: 70  GQEGLHNVLVIDLLGPSLEDLLDLCGRKFS 99

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.3 bits (124), Expect = 3e-08
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 13/96 (13%)

Query: 67  SWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHL 126
               V C +  +  +          + P          L+LQ+N ++        ++ +L
Sbjct: 11  HLRVVQCSDLGLEKVPKD-------LPPDTA------LLDLQNNKITEIKDGDFKNLKNL 57

Query: 127 QSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTG 162
            +L L NNK S   P  ++ L  L+ L LS N L  
Sbjct: 58  HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 93

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 34/182 (18%), Positives = 59/182 (32%), Gaps = 12/182 (6%)

Query: 10  PPSLMTKWLILVIFLNFGHSSREPDVEGEALIEVLKALNDTHGQFTDWNDHFVSPCFSWS 69
           P  +      L +  N     R+    G   + V++   +        N  F        
Sbjct: 95  PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 154

Query: 70  HVTCRNG----------NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDF 119
                            ++  L L  N  +   + S+  L  LA L L  N +S      
Sbjct: 155 IRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 214

Query: 120 LGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGT 179
           L +  HL+ L+L NNK    +P   +    ++ + L +NN++  I    F    +N    
Sbjct: 215 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA-IGSNDFCPPGYNTKKA 272

Query: 180 HL 181
             
Sbjct: 273 SY 274

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 3/122 (2%)

Query: 41  IEVLKALNDTHGQFTDWNDHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLK 100
           ++ L        Q    +++ ++              V+ L       SG  + +   +K
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 101 FLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNL 160
            L+ + + D +++ T+P   G    L  L+L  NK +    A+   L+NL  L LS N++
Sbjct: 151 KLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 161 TG 162
           + 
Sbjct: 208 SA 209

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.3 bits (90), Expect = 5e-04
 Identities = 12/45 (26%), Positives = 18/45 (40%)

Query: 124 THLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQL 168
                L+L NNK +      +  L NL  L L +N ++   P   
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 75

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (124), Expect = 4e-08
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 5/74 (6%)

Query: 102 LASLELQDNDLSGT-LPDFLGSMTHLQSLNLANNKFSG----SIPATWSQLSNLKHLDLS 156
           + SL++Q  +LS     + L  +   Q + L +   +      I +       L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 157 SNNLTGRIPMQLFS 170
           SN L       +  
Sbjct: 64  SNELGDVGVHCVLQ 77

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (111), Expect = 1e-06
 Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 14/135 (10%)

Query: 48  NDTHGQFTDWNDHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKF-----L 102
                 +        + C  +S V  +N  ++ L + +N         + +        L
Sbjct: 312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVL 371

Query: 103 ASLELQDNDLSGT----LPDFLGSMTHLQSLNLANNKFSGSIPATWSQ-----LSNLKHL 153
             L L D D+S +    L   L +   L+ L+L+NN    +      +        L+ L
Sbjct: 372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 431

Query: 154 DLSSNNLTGRIPMQL 168
            L     +  +  +L
Sbjct: 432 VLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 5e-06
 Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 10/93 (10%)

Query: 77  NVISLTLGSNGFSGK-ISPSITKLKFLASLELQDNDLSG----TLPDFLGSMTHLQSLNL 131
           ++ SL +     S    +  +  L+    + L D  L+      +   L     L  LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 132 ANNKFSGSIP-----ATWSQLSNLKHLDLSSNN 159
            +N+              +    ++ L L +  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 1e-04
 Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 4/125 (3%)

Query: 57  WNDHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTL 116
                +                 +    S+  S            +++  L+D  +    
Sbjct: 302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 361

Query: 117 PDFLGSMTHLQSLNLANNKFSG----SIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVA 172
                  + L+ L LA+   S     S+ AT     +L+ LDLS+N L     +QL    
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 173 TFNFT 177
                
Sbjct: 422 RQPGC 426

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 7e-04
 Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 1/57 (1%)

Query: 126 LQSLNLANNKFSGS-IPATWSQLSNLKHLDLSSNNLTGRIPMQLFSVATFNFTGTHL 181
           +QSL++   + S +        L   + + L    LT      + S    N     L
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 1e-07
 Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 8/103 (7%)

Query: 271 DNFSESNIIGQGGFGKVYKGVL----SDNTKVAVKRL---QDYYSPGGEAAFQREVHLIS 323
           +NF    ++G G +GKV+              A+K L               + E  ++ 
Sbjct: 24  ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE 83

Query: 324 VAIHK-NLLQLIGYCTTSSERILVYPFMQNLSVAYRLRVSHKI 365
                  L+ L     T ++  L+  ++    +   L    + 
Sbjct: 84  HIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRERF 126

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 20/115 (17%), Positives = 34/115 (29%), Gaps = 8/115 (6%)

Query: 48  NDTHGQFTDWNDHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLEL 107
            D +          ++      ++      +       N  S +I         L  L +
Sbjct: 232 RDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNV 291

Query: 108 QDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTG 162
            +N L   LP        L+ L  + N  +  +P       NLK L +  N L  
Sbjct: 292 SNNKLI-ELPALPPR---LERLIASFNHLA-EVP---ELPQNLKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 6e-04
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 8/61 (13%)

Query: 102 LASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLT 161
              LEL +  LS +LP+      HL+SL  + N  +  +P       +LK L + +NNL 
Sbjct: 40  AHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELP---ELPQSLKSLLVDNNNLK 91

Query: 162 G 162
            
Sbjct: 92  A 92

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.3 bits (116), Expect = 3e-07
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 279 IGQGGFGKVYKGV-LSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYC 337
           +G G F  V+    + +NT VA+K ++         A + E+ L+      +  +     
Sbjct: 21  LGWGHFSTVWLAKDMVNNTHVAMKIVRG--DKVYTEAAEDEIKLLQRVNDADNTKEDSMG 78

Query: 338 TTSSERILVY 347
                ++L +
Sbjct: 79  ANHILKLLDH 88

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.8 bits (104), Expect = 4e-06
 Identities = 28/144 (19%), Positives = 46/144 (31%), Gaps = 1/144 (0%)

Query: 48  NDTHGQFTDWNDHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLEL 107
                                 +      ++  L LG N      +     L  L +L L
Sbjct: 50  FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109

Query: 108 QDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQ 167
            DN +S  +P     +  L SLNLA+N F+ +    W     L+   L+        P +
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSK 168

Query: 168 LFSVATFNFTGTHLICGSSLEQPC 191
           +  V   +   +   C S   + C
Sbjct: 169 VRDVQIKDLPHSEFKCSSENSEGC 192

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 9e-06
 Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 24/104 (23%)

Query: 81  LTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLG------------------- 121
           L L     +  +   + +L  +  L+L  N L    P                       
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 122 --SMTHLQSLNLANNKF-SGSIPATWSQLSNLKHLDLSSNNLTG 162
             ++  LQ L L NN+    +          L  L+L  N+L  
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 15/133 (11%), Positives = 33/133 (24%), Gaps = 2/133 (1%)

Query: 111 DLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS 170
           +L      +  +    + L+L   K    I    + L     +D S N +       L  
Sbjct: 6   ELIEQAAQYT-NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPLLR 63

Query: 171 VATFNFTGTHLICGSSLEQPCMSRPSPPVSTSRTKLRIVVASASCGAFVLLSLGALFACR 230
                    + IC               +  +   L  +       +   L+   +    
Sbjct: 64  RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP 123

Query: 231 YQKLRKLKHDVFF 243
               +  +  V +
Sbjct: 124 VTNKKHYRLYVIY 136

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 109 DNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS 156
           DN +S   P  L S+ +L  ++L NN+ S   P   +  SNL  + L+
Sbjct: 182 DNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 117 PDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQ 167
              L +++ L +L   +NK S   P   + L NL  + L +N ++   P+ 
Sbjct: 166 LTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA 214

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 4/83 (4%)

Query: 51  HGQFTDWNDHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDN 110
            G          +   S          + +L    N  S      +  L  L  + L++N
Sbjct: 148 AGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNN 205

Query: 111 DLSGTLPDFLGSMTHLQSLNLAN 133
            +S   P  L + ++L  + L N
Sbjct: 206 QISDVSP--LANTSNLFIVTLTN 226

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 95  SITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLD 154
            ++K+     +     +L+  LP  L        L+L+ N       AT    + L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 155 LSSNN 159
           L    
Sbjct: 62  LDRAE 66

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 4e-05
 Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 2/123 (1%)

Query: 65  CFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMT 124
                      GN+  L L  N  S     +   L  L  L L  N ++   P     + 
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 125 HLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFS--VATFNFTGTHLI 182
            L +L L  N  S       + L  L++L L+ N        +     +  F  + + + 
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVP 261

Query: 183 CGS 185
           C  
Sbjct: 262 CSL 264

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 6e-04
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 86  NGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWS 145
           N  S   + ++  L+ L  L L DN               LQ    ++++   S+P    
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCD-CRARPLWAWLQKFRGSSSEVPCSLPQ--- 266

Query: 146 QLSNLKHLDLSSNNLTG 162
           +L+      L++N+L G
Sbjct: 267 RLAGRDLKRLAANDLQG 283

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 11/66 (16%)

Query: 107 LQDNDLSGTLPDFLGSM------THLQSLNLANNKFSGSIP-----ATWSQLSNLKHLDL 155
           L D  LS      +           LQ+L L  N+               ++ +L  L+L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 156 SSNNLT 161
           + N  +
Sbjct: 310 NGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 6e-04
 Identities = 10/93 (10%), Positives = 28/93 (30%), Gaps = 11/93 (11%)

Query: 102 LASLELQDNDLSG----TLPDFLGSMTHLQSLNLANNKFSG----SIPATWSQLSNLKHL 153
           +    L+ + ++     ++   L     ++ + L+ N         +    +   +L+  
Sbjct: 5   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 154 DLSSN---NLTGRIPMQLFSVATFNFTGTHLIC 183
           + S      +   IP  L  +         L  
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 97

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 5e-04
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 120 LGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSS 157
           L  +T LQ+L L+ N  S  + A  + L NL  L+L S
Sbjct: 174 LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 11/87 (12%), Positives = 25/87 (28%), Gaps = 4/87 (4%)

Query: 97  TKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS 156
                     L+   ++  +      +  +  +   N+            L N+  L L+
Sbjct: 21  DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLN 76

Query: 157 SNNLTGRIPMQLFSVATFNFTGTHLIC 183
            N LT   P+       + F   + + 
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVK 103

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 75  NGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGT--LPDFLGSMTHLQSLNLA 132
               + L   S+  +  +      +  L SL L +N L     +   +    +L+ LNL+
Sbjct: 41  QNIDVVLNRRSS-MAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLS 99

Query: 133 NNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIP 165
            N+          +   L+ L L  N+L+    
Sbjct: 100 GNELKSERELDKIKGLKLEELWLDGNSLSDTFR 132

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 14/111 (12%), Positives = 29/111 (26%), Gaps = 2/111 (1%)

Query: 51  HGQFTDWNDHFVSPCFSWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDN 110
                D  D+        +     +   + L L  NG     + +    +        +N
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187

Query: 111 DLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLT 161
           +L     D     +    L+++  +           L  L+       NL 
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK 236

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 9/56 (16%)

Query: 115 TLPDFLGS---MTHLQSLNLANNKFSGSIP------ATWSQLSNLKHLDLSSNNLT 161
           T+ D +        + +      +  G IP      AT S L   KHL LS+NN+ 
Sbjct: 6   TIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	380
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.91
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.82
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.82
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.82
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.81
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.81
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.8
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.8
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.8
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.8
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.79
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.79
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.79
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.77
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.77
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.77
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.77
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.77
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.77
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.77
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.77
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.76
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.75
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.75
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.75
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.75
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.75
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.75
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.74
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.74
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.74
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.74
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.74
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.73
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.73
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.72
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.7
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.7
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.7
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.7
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.69
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.69
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.69
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.68
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.67
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.64
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.64
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.63
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.62
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.62
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.61
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.61
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.61
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.61
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.6
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.58
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.55
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.48
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.43
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.41
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.4
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.36
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.36
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.34
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.26
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.22
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.17
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.15
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.13
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.07
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.04
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.93
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.84
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.83
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.8
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.8
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.69
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.65
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.59
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.45
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.34
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.29
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.23
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.12
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.05
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.03
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.01
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.9
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.85
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.66
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.59
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.05
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.18
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.04
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	95.46
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	92.06
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	80.52

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.91  E-value=1.7e-24  Score=200.69  Aligned_cols=149  Identities=28%  Similarity=0.504  Sum_probs=133.2

Q ss_pred             CCCchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC-CceeeEecCC----CEEEEEeCCCCCcc--ccchhHhCCccCC
Q 016905           31 REPDVEGEALIEVLKALNDTHGQFTDWNDHFVSPCF-SWSHVTCRNG----NVISLTLGSNGFSG--KISPSITKLKFLA  103 (380)
Q Consensus        31 ~~~~~~~~~l~~~~~~~~~~~~~l~~w~~~~~~~c~-~w~gv~c~~~----~l~~l~L~~n~l~g--~~p~~~~~l~~L~  103 (380)
                      .|.+.|++||++||+++.+|. .+++|..+ .|||. .|.||+|+..    +|+.|+|++|+++|  .+|+++++|++|+
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~~~-~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~   79 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN   79 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTT-SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCCCC-CCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCcccc
Confidence            467899999999999999875 68999854 58884 5999999864    79999999999998  5899999999999


Q ss_pred             eEEcCC-CcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECcCCcccccCccccccc---cccccCCC
Q 016905          104 SLELQD-NDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLFSV---ATFNFTGT  179 (380)
Q Consensus       104 ~L~Ls~-N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~---~~~~~~gN  179 (380)
                      +|+|++ |+|+|.+|++|+++++|++|||++|+++|.+|..+..+.+|+.+++++|.+.+.+|..+.++   ..+.+.+|
T Consensus        80 ~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n  159 (313)
T d1ogqa_          80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN  159 (313)
T ss_dssp             EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccc
Confidence            999997 89999999999999999999999999999999999999999999999999999999888765   44556666


Q ss_pred             cc
Q 016905          180 HL  181 (380)
Q Consensus       180 ~~  181 (380)
                      ..
T Consensus       160 ~l  161 (313)
T d1ogqa_         160 RI  161 (313)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.8e-21  Score=176.53  Aligned_cols=110  Identities=15%  Similarity=0.248  Sum_probs=93.0

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++.........+.|.+|++++++++|||||++++++.+++..++||||
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmEy   84 (271)
T d1nvra_           5 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY   84 (271)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEec
Confidence            5688899999999999999998 579999999996443334456799999999999999999999999999999999999


Q ss_pred             ccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +++|+|.++|+.....         .+++.||+|||++||
T Consensus        85 ~~gg~L~~~l~~~~~l~e~~~~~i~~qi~~al~ylH~~~I  124 (271)
T d1nvra_          85 CSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGI  124 (271)
T ss_dssp             CTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             cCCCcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999865443         349999999999875

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=1.7e-21  Score=179.36  Aligned_cols=109  Identities=26%  Similarity=0.339  Sum_probs=91.7

Q ss_pred             CcccccccccCCCeeEEEEEeC-CC---cEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          272 NFSESNIIGQGGFGKVYKGVLS-DN---TKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~~-~g---~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      +|+..++||+|+||+||+|.+. ++   ..||||++.........+.|.+|+++|++++|||||+++|+|..++..++||
T Consensus        27 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~iv~  106 (299)
T d1jpaa_          27 CVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIIT  106 (299)
T ss_dssp             GEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             hcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEEE
Confidence            4555689999999999999983 33   3699999875555556778999999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      |||++|+|.++++.....          .+++.||+|||+++|
T Consensus       107 Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~i  149 (299)
T d1jpaa_         107 EFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNY  149 (299)
T ss_dssp             ECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EecCCCcceeeeccccCCCCHHHHHHHHHHHHHHHHHHhhCCC
Confidence            999999999988764332          349999999999876

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.2e-21  Score=172.81  Aligned_cols=108  Identities=25%  Similarity=0.363  Sum_probs=94.8

Q ss_pred             cCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      ++|+..+.||+|+||+||+|.+.+++.||||+++..  ....++|.+|++++++++|||||+++|+|..++..++|||||
T Consensus         5 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~--~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~   82 (263)
T d1sm2a_           5 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG--AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFM   82 (263)
T ss_dssp             SCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSS--SSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECC
T ss_pred             HHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCC--cCcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEec
Confidence            467788999999999999999988889999999642  334678999999999999999999999999999999999999


Q ss_pred             cCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      ++|+|.++++.....          .+++.||+|||+.+|
T Consensus        83 ~~g~L~~~l~~~~~~~~~~~~~~i~~qia~gl~~lH~~~i  122 (263)
T d1sm2a_          83 EHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACV  122 (263)
T ss_dssp             TTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHhhhccce
Confidence            999999998754332          348999999999876

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=1.6e-21  Score=178.54  Aligned_cols=113  Identities=24%  Similarity=0.366  Sum_probs=96.7

Q ss_pred             HHHHhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCcee
Q 016905          266 LQLATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       266 l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~  344 (380)
                      ++...++|+..+.||+|+||+||+|++ .+++.||||+++..  ....++|.+|+++|++++|||||+++|+|.+++..+
T Consensus        12 wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~--~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~   89 (287)
T d1opja_          12 WEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED--TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFY   89 (287)
T ss_dssp             TBCCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTT--CSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred             cEecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCc--cchHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeE
Confidence            344566788889999999999999998 46889999999643  334678999999999999999999999999999999


Q ss_pred             EEeecccCCChhhhccccccc-----------ceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHKI-----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~~-----------~~~~~aL~yLH~~~i  380 (380)
                      +|||||++|+|.++|+.....           .+++.||+|||+++|
T Consensus        90 iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~~i  136 (287)
T d1opja_          90 IITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNF  136 (287)
T ss_dssp             EEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCCc
Confidence            999999999999999753221           348999999999886

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=6.9e-21  Score=171.45  Aligned_cols=108  Identities=22%  Similarity=0.306  Sum_probs=94.8

Q ss_pred             cCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      ++|+..+.||+|+||+||+|++++++.||||+++..  ....++|.+|+.++++++|||||+++|+|.+++..++||||+
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~--~~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~   81 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG--SMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYM   81 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESS--SSCHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECC
T ss_pred             HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcC--cCCHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEcc
Confidence            578889999999999999999988889999999643  334678999999999999999999999999999999999999


Q ss_pred             cCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      ++|+|.+++......          .+++.||+|||+.+|
T Consensus        82 ~~g~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH~~~i  121 (258)
T d1k2pa_          82 ANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQF  121 (258)
T ss_dssp             TTEEHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred             CCCcHHHhhhccccCCcHHHHHHHHHHHHHHHHHHhhcCc
Confidence            999999997654332          348899999999876

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.8e-21  Score=178.82  Aligned_cols=112  Identities=19%  Similarity=0.213  Sum_probs=98.0

Q ss_pred             HhcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ..++|+..+.||+|+||+||+|+. .+|+.||+|+++........+.+.+|+.+|++++|||||++++++.+++..++||
T Consensus         4 ~~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVm   83 (322)
T d1s9ja_           4 KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICM   83 (322)
T ss_dssp             CGGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            356899999999999999999998 5789999999975445555778999999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeee-cC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCF-SL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~-~i  380 (380)
                      |||++|+|.+++++....         .+++.||+|||++ +|
T Consensus        84 Ey~~gg~L~~~l~~~~~l~~~~~~~~~~qil~aL~yLH~~~~I  126 (322)
T d1s9ja_          84 EHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKI  126 (322)
T ss_dssp             ECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             EcCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhCCE
Confidence            999999999999765443         3499999999974 65

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=1.1e-20  Score=174.49  Aligned_cols=111  Identities=16%  Similarity=0.251  Sum_probs=91.4

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .+.|+..+.||+|+||+||+|.. .+|+.||||++.........+.|.+|+++|++++|||||++++++..++..++|||
T Consensus         8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE   87 (307)
T d1a06a_           8 RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQ   87 (307)
T ss_dssp             GGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             ccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence            45688899999999999999998 56899999999644333445678899999999999999999999999999999999


Q ss_pred             cccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||++|+|.++|......         .+++.||+|||+++|
T Consensus        88 ~~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~i  128 (307)
T d1a06a_          88 LVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLGI  128 (307)
T ss_dssp             CCCSCBHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccCCCcHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhhcee
Confidence            99999999999765444         349999999999886

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.8e-20  Score=171.86  Aligned_cols=111  Identities=18%  Similarity=0.230  Sum_probs=95.8

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-----CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCce
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-----SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSER  343 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-----~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~  343 (380)
                      .+.|+..+.||+|+||+||+|.. .+|+.||||++....     .....+.|.+|+++|.+++|||||++++++.+++..
T Consensus         9 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~   88 (293)
T d1jksa_           9 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV   88 (293)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             ccCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEE
Confidence            35688899999999999999998 679999999986321     122367899999999999999999999999999999


Q ss_pred             eEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          344 ILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ++|||||++|+|.++|......         .+++.||+|||+.+|
T Consensus        89 ~iv~E~~~gg~L~~~i~~~~~l~~~~~~~~~~qi~~al~yLH~~~i  134 (293)
T d1jksa_          89 ILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQI  134 (293)
T ss_dssp             EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEEEEcCCCccccchhccccccchhHHHHHHHHHHHHHHhhhhcce
Confidence            9999999999999999765443         348999999999875

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.4e-20  Score=171.83  Aligned_cols=110  Identities=23%  Similarity=0.328  Sum_probs=90.3

Q ss_pred             hcCcccccc-cccCCCeeEEEEEeC---CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeE
Q 016905          270 TDNFSESNI-IGQGGFGKVYKGVLS---DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       270 ~~~~~~~~~-lg~G~~g~Vy~~~~~---~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~l  345 (380)
                      .++|...++ ||+|+||.||+|++.   ++..||||+++........++|.+|+++|++++|||||+++|+|.. +..++
T Consensus         7 ~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~~~l   85 (285)
T d1u59a_           7 RDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALML   85 (285)
T ss_dssp             GGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEE
T ss_pred             ccCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-CeEEE
Confidence            345555664 999999999999873   3558999999755455567889999999999999999999999865 46899


Q ss_pred             EeecccCCChhhhcccccc-c---------ceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHK-I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~-~---------~~~~~aL~yLH~~~i  380 (380)
                      |||||++|+|.++++..+. .         .+++.||+|||+++|
T Consensus        86 vmE~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~gL~ylH~~~i  130 (285)
T d1u59a_          86 VMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNF  130 (285)
T ss_dssp             EEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEEeCCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999999999999865432 2         349999999999875

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.5e-20  Score=169.76  Aligned_cols=110  Identities=26%  Similarity=0.333  Sum_probs=95.5

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc--CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY--YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~--~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|+..+.||+|+||+||+|+. .+++.||+|++...  ......+.+.+|++++++++|||||++++++.+++..++||
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivm   85 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLIL   85 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEE
Confidence            5688899999999999999998 56899999998532  12334678999999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.++++.....         .+++.||+|||++||
T Consensus        86 Ey~~~g~L~~~l~~~~~l~e~~~~~i~~qi~~al~~lH~~~i  127 (263)
T d2j4za1          86 EYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRV  127 (263)
T ss_dssp             ECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eecCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            999999999999865443         349999999999886

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.7e-20  Score=171.55  Aligned_cols=110  Identities=19%  Similarity=0.259  Sum_probs=95.1

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .+.|+..+.||+|+||.||+|.. .+|+.||||++... .....+.|.+|+++|++++|||||++++++.+++..++|||
T Consensus        11 ~d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~-~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmE   89 (288)
T d2jfla1          11 EDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTK-SEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIE   89 (288)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-SSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ccCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcC-CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEe
Confidence            35688889999999999999998 57899999999643 34456789999999999999999999999999999999999


Q ss_pred             cccCCChhhhcccccc-c---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK-I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~-~---------~~~~~aL~yLH~~~i  380 (380)
                      ||++|+|.+++..... .         .+++.||+|||++||
T Consensus        90 y~~~g~L~~~~~~~~~~l~e~~~~~i~~qi~~gL~ylH~~~i  131 (288)
T d2jfla1          90 FCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKI  131 (288)
T ss_dssp             CCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             cCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            9999999999865332 2         349999999999875

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=8.3e-21  Score=172.30  Aligned_cols=109  Identities=23%  Similarity=0.307  Sum_probs=92.3

Q ss_pred             HhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      ..++|+..+.||+|+||.||+|.+++++.||||+++..  ....+.|.+|++++++++|||||+++|+|.+ +..++|||
T Consensus        11 ~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~--~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~-~~~~iv~E   87 (272)
T d1qpca_          11 PRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG--SMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITE   87 (272)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTT--SSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred             CHHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccC--cCCHHHHHHHHHHHHhCCCCCEeEEEeeecc-CCeEEEEE
Confidence            45678888999999999999999988889999999643  3346789999999999999999999998865 56799999


Q ss_pred             cccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.++++....           ..+++.||+|||+.+|
T Consensus        88 y~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~~i  130 (272)
T d1qpca_          88 YMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNY  130 (272)
T ss_dssp             CCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             eCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9999999998864322           2348899999999875

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.1e-20  Score=171.69  Aligned_cols=109  Identities=28%  Similarity=0.412  Sum_probs=91.0

Q ss_pred             HhcCcccccccccCCCeeEEEEEeCCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ..++|+..+.||+|+||+||+|++.  ..||||+++.. .+....+.|.+|+++|.+++|||||+++|++.+ +..++||
T Consensus         6 ~~~~~~~~~~lG~G~fg~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~-~~~~lv~   82 (276)
T d1uwha_           6 PDGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA-PQLAIVT   82 (276)
T ss_dssp             CTTCCCCCSEEEECSSCEEEEEESS--SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEE
T ss_pred             ccccEEEEEEEeeCCCcEEEEEEEC--CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEec-cEEEEEE
Confidence            3567888899999999999999863  36999999633 234567889999999999999999999999865 5689999


Q ss_pred             ecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      |||++|+|.++|+..+..          .+++.||+|||+++|
T Consensus        83 Ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~i  125 (276)
T d1uwha_          83 QWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSI  125 (276)
T ss_dssp             ECCCEEEHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ecCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhcCCE
Confidence            999999999999754332          348999999999886

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.1e-20  Score=169.34  Aligned_cols=109  Identities=16%  Similarity=0.232  Sum_probs=94.2

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      +.|+..+.||+|+||+||+|.. .+|+.||||++... .....+.+.+|++++++++|||||++++++..++..++||||
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~-~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy   98 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQ-QQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY   98 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGG-GCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecc-cChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEe
Confidence            4688889999999999999998 67999999999633 233467899999999999999999999999999999999999


Q ss_pred             ccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      +++|+|.++++....        ..+++.||+|||++||
T Consensus        99 ~~gg~L~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~~i  137 (293)
T d1yhwa1          99 LAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQV  137 (293)
T ss_dssp             CTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             cCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence            999999998865422        1359999999999885

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5e-20  Score=167.50  Aligned_cols=103  Identities=20%  Similarity=0.307  Sum_probs=84.6

Q ss_pred             cccccCCCeeEEEEEeC---CCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecccC
Q 016905          277 NIIGQGGFGKVYKGVLS---DNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFMQN  352 (380)
Q Consensus       277 ~~lg~G~~g~Vy~~~~~---~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~~~  352 (380)
                      +.||+|+||+||+|.+.   .++.||||+++... +....++|.+|+++|++++|||||+++|+|.. +..+||||||++
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~-~~~~lvmE~~~~   91 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL   91 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEecc-CCEEEEEEcCCC
Confidence            46999999999999873   35689999996432 33346789999999999999999999999965 467899999999


Q ss_pred             CChhhhccccccc---------ceeeeeecceeeecC
Q 016905          353 LSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       353 GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+|.++++.....         .+++.||+|||+.+|
T Consensus        92 g~L~~~l~~~~~l~~~~~~~i~~qi~~gl~ylH~~~i  128 (277)
T d1xbba_          92 GPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNF  128 (277)
T ss_dssp             EEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             CcHHHHHhhccCCCHHHHHHHHHHHHHHHhhHHhCCc
Confidence            9999999865543         348999999999875

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.8e-20  Score=169.20  Aligned_cols=110  Identities=17%  Similarity=0.194  Sum_probs=95.3

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc--CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY--YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~--~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++...  ......+.|.+|+++|++++|||||++++++.+++..++||
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivm   87 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL   87 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEE
Confidence            5688899999999999999998 57999999998632  12334678999999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.+++...+..         .+++.||+|||+.+|
T Consensus        88 Ey~~gg~L~~~~~~~~~l~e~~~~~~~~qi~~al~ylH~~~i  129 (288)
T d1uu3a_          88 SYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGI  129 (288)
T ss_dssp             CCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EccCCCCHHHhhhccCCCCHHHHHHHHHHHHHHHHhhccccE
Confidence            999999999998865544         348999999999875

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.1e-19  Score=168.58  Aligned_cols=109  Identities=20%  Similarity=0.350  Sum_probs=94.4

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .+.|+..+.||+|+||+||+|.. .+|+.||||.++..  ......+.+|+++|.+++|||||++++++.+++..++|||
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~--~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE   81 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK--GTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFE   81 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC--THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCC--cccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEe
Confidence            35688899999999999999998 57899999999642  2345668899999999999999999999999999999999


Q ss_pred             cccCCChhhhcccccc-c---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK-I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~-~---------~~~~~aL~yLH~~~i  380 (380)
                      ||++|+|.++|+.... .         .+++.||+|||++||
T Consensus        82 ~~~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~al~yLH~~~i  123 (321)
T d1tkia_          82 FISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNI  123 (321)
T ss_dssp             CCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             cCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999976542 2         349999999999885

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=4.7e-20  Score=169.74  Aligned_cols=118  Identities=25%  Similarity=0.342  Sum_probs=100.5

Q ss_pred             HHHHHHHhcCcccccccccCCCeeEEEEEeC------CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceee
Q 016905          263 CRELQLATDNFSESNIIGQGGFGKVYKGVLS------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGY  336 (380)
Q Consensus       263 ~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~  336 (380)
                      +.+++.++++|+..+.||+|+||+||+|++.      +++.||||++.........++|.+|++++++++||||++++++
T Consensus         5 ~~~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~   84 (301)
T d1lufa_           5 LLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGV   84 (301)
T ss_dssp             HHHTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             hhhccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceee
Confidence            3456667889999999999999999999862      4578999999755555557889999999999999999999999


Q ss_pred             eeCCCceeEEeecccCCChhhhcccccc---------------------------------cceeeeeecceeeecC
Q 016905          337 CTTSSERILVYPFMQNLSVAYRLRVSHK---------------------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       337 ~~~~~~~~lV~Ey~~~GsL~~~L~~~~~---------------------------------~~~~~~aL~yLH~~~i  380 (380)
                      |...+..++||||+++|+|.++|+....                                 ..+++.||+|||+++|
T Consensus        85 ~~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~i  161 (301)
T d1lufa_          85 CAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKF  161 (301)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eccCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCCe
Confidence            9999999999999999999999964321                                 2348999999999875

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.77  E-value=9.6e-20  Score=171.01  Aligned_cols=110  Identities=19%  Similarity=0.301  Sum_probs=95.2

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .++|+..+.||+|+||.||+|+. .+|+.||||++... .....+.+.+|+.+|.+++|||||++++++.+++..++|||
T Consensus        25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~-~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE  103 (350)
T d1koaa2          25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTP-HESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYE  103 (350)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCC-SHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             ccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEccc-chhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEE
Confidence            45788899999999999999998 57999999999542 23346789999999999999999999999999999999999


Q ss_pred             cccCCChhhhcccccc-c---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK-I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~-~---------~~~~~aL~yLH~~~i  380 (380)
                      ||++|+|.+++..... .         .+++.||+|||++||
T Consensus       104 ~~~gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~i  145 (350)
T d1koaa2         104 FMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNY  145 (350)
T ss_dssp             CCCSCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             cCCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999964432 2         349999999999875

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5.7e-20  Score=166.41  Aligned_cols=109  Identities=17%  Similarity=0.214  Sum_probs=90.0

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeC--CCceeEE
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTT--SSERILV  346 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~--~~~~~lV  346 (380)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++.... +....+.|.+|++++.+++|||||++++++.+  .+..++|
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~iv   83 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIV   83 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEE
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEE
Confidence            5788899999999999999998 679999999996432 33346779999999999999999999999865  4557999


Q ss_pred             eecccCCChhhhccccc----c---------cceeeeeecceeeec
Q 016905          347 YPFMQNLSVAYRLRVSH----K---------IYTKIISLSSLHCFS  379 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~----~---------~~~~~~aL~yLH~~~  379 (380)
                      |||+++|+|.++++...    .         ..+++.||+|||+.+
T Consensus        84 mEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~  129 (269)
T d2java1          84 MEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRS  129 (269)
T ss_dssp             EECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999986421    1         134899999999865

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=5.2e-20  Score=169.97  Aligned_cols=110  Identities=21%  Similarity=0.243  Sum_probs=93.2

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC--CchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS--PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      +.|+..+.||+|+||.||+|+. .+|+.||||++.....  ....+.|.+|+++|.+++|||||++++++.+++..++||
T Consensus        15 ~~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~   94 (309)
T d1u5ra_          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM   94 (309)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             HhcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEE
Confidence            3488889999999999999997 6789999999964322  223567999999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |||++|+|..++..+...         .+++.||+|||++||
T Consensus        95 E~~~~g~l~~~~~~~~~l~e~~~~~i~~qi~~aL~yLH~~~i  136 (309)
T d1u5ra_          95 EYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNM  136 (309)
T ss_dssp             ECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EecCCCchHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            999999998776544433         349999999999886

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.1e-19  Score=164.47  Aligned_cols=106  Identities=23%  Similarity=0.283  Sum_probs=88.4

Q ss_pred             ccccccccCCCeeEEEEEe-CCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcCcCCCCccceeeeeC----CCceeEEe
Q 016905          274 SESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT----SSERILVY  347 (380)
Q Consensus       274 ~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~----~~~~~lV~  347 (380)
                      +..++||+|+||+||+|+. .+++.||+|++... ......+.|.+|+++|++++|||||++++++..    ++..++||
T Consensus        12 ~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivm   91 (270)
T d1t4ha_          12 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT   91 (270)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEE
Confidence            4456799999999999998 56889999999643 233456789999999999999999999999864    34578999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeec
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFS  379 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~  379 (380)
                      ||+++|+|.++++.....         .+++.||+|||+.+
T Consensus        92 E~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~gl~yLH~~~  132 (270)
T d1t4ha_          92 ELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRT  132 (270)
T ss_dssp             ECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             eCCCCCcHHHHHhccccccHHHHHHHHHHHHHHHHHHHHCC
Confidence            999999999999765433         34999999999987

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.76  E-value=2.3e-19  Score=168.45  Aligned_cols=110  Identities=18%  Similarity=0.258  Sum_probs=94.7

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      .+.|+..+.||+|+||.||+|+. .+|+.||||++... .....+.+.+|+++|.+++|||||++++++.+++..++|||
T Consensus        28 ~d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~-~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE  106 (352)
T d1koba_          28 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTP-YPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILE  106 (352)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-SHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEE
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCc-chhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEE
Confidence            35688899999999999999998 67999999998642 23345678999999999999999999999999999999999


Q ss_pred             cccCCChhhhcccccc-c---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK-I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~-~---------~~~~~aL~yLH~~~i  380 (380)
                      ||++|+|.+++..... .         .+++.||+|||++||
T Consensus       107 ~~~gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~i  148 (352)
T d1koba_         107 FLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSI  148 (352)
T ss_dssp             CCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             cCCCChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            9999999998765432 2         349999999999875

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.75  E-value=1.7e-19  Score=163.85  Aligned_cols=110  Identities=20%  Similarity=0.236  Sum_probs=94.1

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCC--------chHHHHHHHHHHHhcCc-CCCCccceeeeeCC
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSP--------GGEAAFQREVHLISVAI-HKNLLQLIGYCTTS  340 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--------~~~~~f~~e~~~l~~l~-H~Niv~l~g~~~~~  340 (380)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++......        ...+.+.+|+.++.+++ |||||++++++.++
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~   82 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN   82 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence            5788899999999999999998 67999999999632211        12346889999999997 99999999999999


Q ss_pred             CceeEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          341 SERILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       341 ~~~~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +..++|||||++|||.++|+.+...         .+++.||+|||++||
T Consensus        83 ~~~~ivmE~~~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~~lH~~~i  131 (277)
T d1phka_          83 TFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNI  131 (277)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             cceEEEEEcCCCchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999865554         349999999999875

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.1e-19  Score=163.84  Aligned_cols=111  Identities=23%  Similarity=0.381  Sum_probs=93.7

Q ss_pred             hcCcccccccccCCCeeEEEEEeCC-C----cEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCcee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLSD-N----TKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~~-g----~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~  344 (380)
                      .+.|+..++||+|+||.||+|.+.. +    ..||||++.........++|.+|++++.+++|||||+++|+|.+.+..+
T Consensus         6 ~~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~   85 (283)
T d1mqba_           6 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM   85 (283)
T ss_dssp             TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred             HHHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceE
Confidence            3567888999999999999999833 2    4799999975545555678999999999999999999999999999999


Q ss_pred             EEeecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      +|||||++|++.+++......          .+++.||+|||+.+|
T Consensus        86 ~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~~lH~~~i  131 (283)
T d1mqba_          86 IITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNY  131 (283)
T ss_dssp             EEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEecccCcchhhhhcccccccHHHHHHHHHHHHHhhhhcccccc
Confidence            999999999999988654332          348999999999876

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1e-19  Score=163.97  Aligned_cols=107  Identities=25%  Similarity=0.333  Sum_probs=88.6

Q ss_pred             hcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeC-CCceeEEee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT-SSERILVYP  348 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~-~~~~~lV~E  348 (380)
                      .++|+..+.||+|+||.||+|.+ .|+.||||+++.   ....++|.+|++++++++|||||+++|+|.+ ++..++|||
T Consensus         6 ~~~~~~~~~lG~G~fg~Vy~~~~-~~~~vAvK~i~~---~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~e   81 (262)
T d1byga_           6 MKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKN---DATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTE   81 (262)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCC---CC--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEEC
T ss_pred             HHHeEEeEEEecCCCeEEEEEEE-CCeEEEEEEECc---HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEe
Confidence            34677789999999999999998 678999999954   2345789999999999999999999999965 456899999


Q ss_pred             cccCCChhhhcccccc-----------cceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK-----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~-----------~~~~~~aL~yLH~~~i  380 (380)
                      |+++|+|.++|+.+..           ..+++.||+|||+.+|
T Consensus        82 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~~i  124 (262)
T d1byga_          82 YMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNF  124 (262)
T ss_dssp             CCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccCce
Confidence            9999999999975432           1349999999999875

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2e-19  Score=167.88  Aligned_cols=110  Identities=19%  Similarity=0.194  Sum_probs=96.3

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|+..++||+|+||.||+|+. .+|+.||||++....  .....+.+.+|+.+|++++|||||++++++.+++..++||
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv~   84 (337)
T d1o6la_           5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM   84 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccce
Confidence            5788899999999999999998 679999999996321  2334677899999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |||++|+|.++++..+..         .+++.||+|||++||
T Consensus        85 ey~~gg~L~~~~~~~~~~~e~~~~~~~~qil~al~ylH~~~i  126 (337)
T d1o6la_          85 EYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDV  126 (337)
T ss_dssp             ECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eccCCCchhhhhhcccCCcHHHHHHHHHHHhhhhhhhhhcCc
Confidence            999999999999865544         349999999999986

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.7e-19  Score=163.19  Aligned_cols=108  Identities=21%  Similarity=0.300  Sum_probs=92.1

Q ss_pred             hcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      .++|+..+.||+|+||+||+|++++++.||||++...  ....+.|.+|+.++.+++|||||+++|+|.+ ++.++||||
T Consensus        16 ~~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~--~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~-~~~~lv~Ey   92 (285)
T d1fmka3          16 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG--TMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEY   92 (285)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTT--SSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECC
T ss_pred             HHHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcc--cCCHHHHHHHHHHHHhcccCCEeEEEEEEec-CCeEEEEEe
Confidence            4678889999999999999999988889999999643  3346789999999999999999999999854 568999999


Q ss_pred             ccCCChhhhccccc--cc---------ceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSH--KI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~--~~---------~~~~~aL~yLH~~~i  380 (380)
                      |++|+|.++++...  ..         .+++.||+|||+.+|
T Consensus        93 ~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~~i  134 (285)
T d1fmka3          93 MSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNY  134 (285)
T ss_dssp             CTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhhhe
Confidence            99999999987532  11         349999999999876

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.5e-19  Score=166.90  Aligned_cols=110  Identities=23%  Similarity=0.385  Sum_probs=89.8

Q ss_pred             cCcccccccccCCCeeEEEEEeC-CCc--EEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCCCceeEE
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLS-DNT--KVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~-~g~--~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      ++|+..++||+|+||.||+|++. +|.  .||||++.........++|.+|+++|.++ +|||||+++|+|..++..++|
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV   89 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   89 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEE
Confidence            56777899999999999999983 444  58889886544455677899999999998 799999999999999999999


Q ss_pred             eecccCCChhhhcccccc-------------------------cceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHK-------------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~-------------------------~~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.++|+....                         ..+++.||.|||+.+|
T Consensus        90 ~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~i  148 (309)
T d1fvra_          90 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQF  148 (309)
T ss_dssp             ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCCc
Confidence            999999999999975421                         2459999999999875

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2e-19  Score=167.28  Aligned_cols=113  Identities=24%  Similarity=0.395  Sum_probs=92.3

Q ss_pred             HHhcCcccccccccCCCeeEEEEEeCC-C-----cEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCC
Q 016905          268 LATDNFSESNIIGQGGFGKVYKGVLSD-N-----TKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTS  340 (380)
Q Consensus       268 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~-g-----~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~  340 (380)
                      ...++|+..++||+|+||+||+|+... +     ..||||++.........+.|.+|+.+|.++ +|||||+++|++...
T Consensus        34 i~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~  113 (325)
T d1rjba_          34 FPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLS  113 (325)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             CCHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeC
Confidence            345788889999999999999998722 2     379999997544555567899999999998 899999999999999


Q ss_pred             CceeEEeecccCCChhhhcccccc--------------------------------cceeeeeecceeeecC
Q 016905          341 SERILVYPFMQNLSVAYRLRVSHK--------------------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       341 ~~~~lV~Ey~~~GsL~~~L~~~~~--------------------------------~~~~~~aL~yLH~~~i  380 (380)
                      +..++|||||++|+|.++|+.++.                                ..+++.||+|||+++|
T Consensus       114 ~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~I  185 (325)
T d1rjba_         114 GPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSC  185 (325)
T ss_dssp             SSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             CeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            999999999999999999976532                                1358999999999875

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=7.2e-20  Score=169.05  Aligned_cols=115  Identities=21%  Similarity=0.322  Sum_probs=96.7

Q ss_pred             HHHHhcCcccccccccCCCeeEEEEEeC------CCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeC
Q 016905          266 LQLATDNFSESNIIGQGGFGKVYKGVLS------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT  339 (380)
Q Consensus       266 l~~~~~~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~  339 (380)
                      ++...++|+..+.||+|+||+||+|.+.      +++.||||+++..........|.+|+.++.+++|||||+++|+|..
T Consensus        15 ~ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~   94 (308)
T d1p4oa_          15 WEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQ   94 (308)
T ss_dssp             TBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECS
T ss_pred             eeecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEec
Confidence            3344577888899999999999999872      3578999999755455556779999999999999999999999999


Q ss_pred             CCceeEEeecccCCChhhhccccc-------------------ccceeeeeecceeeecC
Q 016905          340 SSERILVYPFMQNLSVAYRLRVSH-------------------KIYTKIISLSSLHCFSL  380 (380)
Q Consensus       340 ~~~~~lV~Ey~~~GsL~~~L~~~~-------------------~~~~~~~aL~yLH~~~i  380 (380)
                      ++..++|||||++|+|.++++..+                   ...+++.||.|||+.+|
T Consensus        95 ~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~i  154 (308)
T d1p4oa_          95 GQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKF  154 (308)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCCe
Confidence            999999999999999999987432                   12348899999999875

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.5e-19  Score=165.17  Aligned_cols=110  Identities=22%  Similarity=0.342  Sum_probs=93.1

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHHHHHHHHh-cCcCCCCccceeeeeCCCceeEE
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQREVHLIS-VAIHKNLLQLIGYCTTSSERILV  346 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~~e~~~l~-~l~H~Niv~l~g~~~~~~~~~lV  346 (380)
                      ++|+..++||+|+||+||+|+. .+|+.||||+++...  .....+.+..|..++. .++|||||++++++.+++..++|
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yiv   81 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV   81 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEE
Confidence            5788899999999999999998 579999999996321  2234566778887766 68999999999999999999999


Q ss_pred             eecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||||++|+|.++++.....         .+++.||+|||+++|
T Consensus        82 mEy~~~g~L~~~i~~~~~~~e~~~~~~~~qi~~al~ylH~~~i  124 (320)
T d1xjda_          82 MEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKGI  124 (320)
T ss_dssp             EECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EeecCCCcHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            9999999999999865544         349999999999886

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=3.7e-19  Score=164.68  Aligned_cols=110  Identities=17%  Similarity=0.253  Sum_probs=95.3

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc--CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY--YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~--~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++...  ......+.+.+|+.++++++|||||++++++.+++..++||
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivm   83 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM   83 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEe
Confidence            5688899999999999999998 66999999999632  12334678999999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |||++|+|.+++......         .+++.||+|||++||
T Consensus        84 E~~~gg~l~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i  125 (316)
T d1fota_          84 DYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKDI  125 (316)
T ss_dssp             CCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred             eecCCccccccccccccccccHHHHHHHHHHHhhhhhccCcE
Confidence            999999999998765443         459999999999885

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.9e-19  Score=165.16  Aligned_cols=113  Identities=22%  Similarity=0.313  Sum_probs=96.7

Q ss_pred             HHhcCcccccccccCCCeeEEEEEe------CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeCC
Q 016905          268 LATDNFSESNIIGQGGFGKVYKGVL------SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTTS  340 (380)
Q Consensus       268 ~~~~~~~~~~~lg~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~~  340 (380)
                      ...++|+..++||+|+||.||+|++      .+++.||||+++..........|.+|+.++.++ +|||||+++|+|..+
T Consensus        20 ~~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~   99 (311)
T d1t46a_          20 FPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIG   99 (311)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             CCHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeC
Confidence            3457788899999999999999986      346799999997554455677899999999999 699999999999999


Q ss_pred             CceeEEeecccCCChhhhcccccc---------------------------cceeeeeecceeeecC
Q 016905          341 SERILVYPFMQNLSVAYRLRVSHK---------------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       341 ~~~~lV~Ey~~~GsL~~~L~~~~~---------------------------~~~~~~aL~yLH~~~i  380 (380)
                      +..++|||||++|+|.++|+....                           ..+++.|++|||+++|
T Consensus       100 ~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~i  166 (311)
T d1t46a_         100 GPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNC  166 (311)
T ss_dssp             SSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            999999999999999999975432                           2449999999999876

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.2e-19  Score=162.81  Aligned_cols=111  Identities=21%  Similarity=0.272  Sum_probs=92.3

Q ss_pred             HhcCcccccccccCCCeeEEEEEeCC----CcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCcee
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVLSD----NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~~~----g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~  344 (380)
                      ..++|+..+.||+|+||.||+|++..    +..||||+++........+.|.+|++++++++|||||+++|++. ++..+
T Consensus         5 ~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~   83 (273)
T d1mp8a_           5 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVW   83 (273)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCE
T ss_pred             CHHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCeEE
Confidence            35678889999999999999999732    35799999865444555678999999999999999999999986 46789


Q ss_pred             EEeecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      +||||+++|+|.+++......          .+++.||+|||+.+|
T Consensus        84 iv~E~~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~i  129 (273)
T d1mp8a_          84 IIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRF  129 (273)
T ss_dssp             EEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEeccCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhhhhcccCe
Confidence            999999999999987654322          349999999999876

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.2e-18  Score=160.91  Aligned_cols=105  Identities=27%  Similarity=0.423  Sum_probs=87.9

Q ss_pred             ccccccCCCeeEEEEEeCC----CcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeC-CCceeEEeecc
Q 016905          276 SNIIGQGGFGKVYKGVLSD----NTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTT-SSERILVYPFM  350 (380)
Q Consensus       276 ~~~lg~G~~g~Vy~~~~~~----g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~-~~~~~lV~Ey~  350 (380)
                      .++||+|+||+||+|++.+    ...||||+++........++|.+|+++|++++|||||+++|+|.. ++..++|||||
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~  111 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM  111 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECC
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEe
Confidence            4689999999999999833    236999999754455567889999999999999999999999875 56789999999


Q ss_pred             cCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      ++|+|.++++.....          .+++.||.|||+.+|
T Consensus       112 ~~g~l~~~~~~~~~~~~~~~~~~i~~qia~gL~~lH~~~i  151 (311)
T d1r0pa_         112 KHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKF  151 (311)
T ss_dssp             TTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ecCchhhhhccccccchHHHHHHHHHHHHHhhhhhcccCc
Confidence            999999998855432          348999999999876

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.73  E-value=6.7e-19  Score=159.94  Aligned_cols=111  Identities=17%  Similarity=0.217  Sum_probs=93.0

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCC--CchHHHHHHHHHHHhcCcCCCCccceeeeeCCC----c
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYS--PGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS----E  342 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~----~  342 (380)
                      .++|+..+.||+|+||.||+|+. .+|+.||||+++....  ....+.|.+|++++++++|||||++++++...+    .
T Consensus         6 ~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~   85 (277)
T d1o6ya_           6 SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   85 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEE
T ss_pred             cceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCce
Confidence            35688899999999999999997 6799999999964322  233567999999999999999999999987643    3


Q ss_pred             eeEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      .++||||+++|+|.+++...+..         .+++.||+|||+.||
T Consensus        86 ~~lvmE~~~g~~L~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~i  132 (277)
T d1o6ya_          86 PYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGI  132 (277)
T ss_dssp             EEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEEEEECCCCCEehhhhcccCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            78999999999999998765443         349999999999875

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.9e-18  Score=159.98  Aligned_cols=109  Identities=24%  Similarity=0.373  Sum_probs=88.1

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCc----EEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeE
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNT----KVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~----~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~l  345 (380)
                      ++|+..++||+|+||+||+|.+ .+|+    .||||++....+....++|.+|++++++++|||||+++|+|.++ ..++
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-~~~~   87 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQL   87 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-SEEE
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-CeeE
Confidence            4688899999999999999998 3444    68999987555555678999999999999999999999999864 5678


Q ss_pred             EeecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          346 VYPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       346 V~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      ++||+.+|+|.+++......          .+++.||+|||+++|
T Consensus        88 v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~i  132 (317)
T d1xkka_          88 ITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL  132 (317)
T ss_dssp             EEECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEeccCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHcCc
Confidence            89999999999988754332          349999999999876

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.70  E-value=2.3e-18  Score=157.05  Aligned_cols=110  Identities=17%  Similarity=0.241  Sum_probs=94.2

Q ss_pred             cCcccccccccCCCeeEEEEEeCCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeec
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPF  349 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey  349 (380)
                      ++|+..++||+|+||+||+|+..+|+.||||++.... .....+.|.+|+.+|++++|||||++++++..++..++++||
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~   81 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEe
Confidence            5788899999999999999999889999999996322 233467899999999999999999999999999999999999


Q ss_pred             ccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          350 MQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       350 ~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +.++.+..+.+.....         .+++.||+|||+++|
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~I  121 (286)
T d1ob3a_          82 LDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRV  121 (286)
T ss_dssp             CSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ehhhhHHHHHhhcCCcchhhhHHHHHHHHHHHHHhccCcE
Confidence            9988777776654433         348999999999886

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.4e-18  Score=156.88  Aligned_cols=109  Identities=24%  Similarity=0.385  Sum_probs=88.0

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++.... .....+.+.+|+++|++++|||||++++++..++..++|||
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e   81 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   81 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEe
Confidence            5788999999999999999998 679999999996322 22346789999999999999999999999999999999999


Q ss_pred             cccCCChhhhcccc-cc----------cceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVS-HK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~-~~----------~~~~~~aL~yLH~~~i  380 (380)
                      |+.++ +.+++... ..          ..+++.||+|||+.||
T Consensus        82 ~~~~~-~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~I  123 (298)
T d1gz8a_          82 FLHQD-LKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRV  123 (298)
T ss_dssp             CCSEE-HHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ecCCc-hhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCCE
Confidence            99765 44444322 11          1349999999999886

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.8e-18  Score=157.53  Aligned_cols=105  Identities=25%  Similarity=0.305  Sum_probs=85.6

Q ss_pred             ccccccCCCeeEEEEEe-CCCcEEEEEEecccCCC----chHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEeecc
Q 016905          276 SNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSP----GGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYPFM  350 (380)
Q Consensus       276 ~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~Ey~  350 (380)
                      .++||+|+||+||+|+. .+|+.||||+++.....    ...+.+.+|+.++.+++|||||++++++..++..++||||+
T Consensus         3 l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~~   82 (299)
T d1ua2a_           3 LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFM   82 (299)
T ss_dssp             EEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECC
T ss_pred             ceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhhh
Confidence            57899999999999998 56999999999632211    12457899999999999999999999999999999999999


Q ss_pred             cCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          351 QNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       351 ~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ++|++..+.......         .+++.||+|||++||
T Consensus        83 ~~~~~~~~~~~~~~l~~~~~~~~~~qil~aL~~lH~~~i  121 (299)
T d1ua2a_          83 ETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWI  121 (299)
T ss_dssp             SEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cchHHhhhhhcccCCCHHHHHHHHHHHHHHHHHhhccce
Confidence            998888776644333         349999999999886

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.70  E-value=3.3e-18  Score=161.29  Aligned_cols=110  Identities=23%  Similarity=0.272  Sum_probs=90.1

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC--CCchHHHHH---HHHHHHhcCcCCCCccceeeeeCCCcee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY--SPGGEAAFQ---REVHLISVAIHKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~--~~~~~~~f~---~e~~~l~~l~H~Niv~l~g~~~~~~~~~  344 (380)
                      ++|+..++||+|+||.||+|+. .+|+.||||++....  .......+.   .|+.+++.++|||||++++++..++..+
T Consensus         4 ddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~~   83 (364)
T d1omwa3           4 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS   83 (364)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred             HhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEEE
Confidence            5788899999999999999998 579999999985211  111233344   4477788889999999999999999999


Q ss_pred             EEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      +|||||++|+|.++|......         .+++.||+|||+++|
T Consensus        84 ivmE~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~ylH~~~i  128 (364)
T d1omwa3          84 FILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFV  128 (364)
T ss_dssp             EEECCCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEEEecCCCcHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHCCc
Confidence            999999999999999765443         349999999999875

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=3e-18  Score=160.74  Aligned_cols=110  Identities=18%  Similarity=0.223  Sum_probs=95.1

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc--CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEe
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY--YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVY  347 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~--~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~  347 (380)
                      ++|+..+.||+|+||.||+|+. .+|+.||||++...  ......+.+.+|+++|..++|||||++++++...+..++||
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~  120 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccccccccccc
Confidence            4688899999999999999998 57999999998522  12334677999999999999999999999999999999999


Q ss_pred             ecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          348 PFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       348 Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      ||+++|+|.+++......         .+++.||+|||+++|
T Consensus       121 e~~~~g~l~~~l~~~~~l~e~~~~~i~~qi~~aL~yLH~~~i  162 (350)
T d1rdqe_         121 EYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDL  162 (350)
T ss_dssp             ECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             ccccccchhhhHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            999999999999765443         349999999999875

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.6e-18  Score=155.67  Aligned_cols=109  Identities=26%  Similarity=0.303  Sum_probs=82.2

Q ss_pred             cCcccccccccCCCeeEEEEEe--CCC--cEEEEEEecccC--CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCcee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL--SDN--TKVAVKRLQDYY--SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERI  344 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~--~~g--~~vavK~l~~~~--~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~  344 (380)
                      ++|+..+.||+|+||.||+|++  +++  ..||||++....  .....++|.+|+.+|.+++|||||+++|+|.+ +..+
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-~~~~   86 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-PPMK   86 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCE
T ss_pred             HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-cchh
Confidence            4578889999999999999987  333  378999986432  23346789999999999999999999999976 4678


Q ss_pred             EEeecccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      +||||+++|++.+++..+...          .+++.||.|||+++|
T Consensus        87 lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~i  132 (273)
T d1u46a_          87 MVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRF  132 (273)
T ss_dssp             EEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             eeeeeecCcchhhhhhcccCCCCHHHHHHHHHHHHHHHHHhhhCCE
Confidence            999999999999988654321          349999999999875

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.8e-18  Score=156.62  Aligned_cols=112  Identities=21%  Similarity=0.314  Sum_probs=89.6

Q ss_pred             HhcCcccccccccCCCeeEEEEEeC--------CCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeC
Q 016905          269 ATDNFSESNIIGQGGFGKVYKGVLS--------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTT  339 (380)
Q Consensus       269 ~~~~~~~~~~lg~G~~g~Vy~~~~~--------~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~  339 (380)
                      ..++|...+.||+|+||.||+|+..        ++..||||+++.........+|.+|...+.++ +|||||+++|+|.+
T Consensus        11 ~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~   90 (299)
T d1fgka_          11 PRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ   90 (299)
T ss_dssp             CGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             cHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEeccccccc
Confidence            4567788899999999999999862        23579999997655555678899999999988 89999999999999


Q ss_pred             CCceeEEeecccCCChhhhcccccc-------------------------cceeeeeecceeeecC
Q 016905          340 SSERILVYPFMQNLSVAYRLRVSHK-------------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       340 ~~~~~lV~Ey~~~GsL~~~L~~~~~-------------------------~~~~~~aL~yLH~~~i  380 (380)
                      ++..++|||||++|+|.++|+.+..                         ..+++.||+|||+.+|
T Consensus        91 ~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~i  156 (299)
T d1fgka_          91 DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKC  156 (299)
T ss_dssp             SSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCCE
Confidence            9999999999999999999975532                         1249999999999876

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.2e-18  Score=156.29  Aligned_cols=118  Identities=19%  Similarity=0.299  Sum_probs=93.2

Q ss_pred             HHHHHHHhcCcccccccccCCCeeEEEEEeC------CCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCcccee
Q 016905          263 CRELQLATDNFSESNIIGQGGFGKVYKGVLS------DNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIG  335 (380)
Q Consensus       263 ~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g  335 (380)
                      ..+++...++|+..+.||+|+||.||+|...      +++.||||++.........+.|.+|...+.++ +|+|||.+++
T Consensus         5 ~~~wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~   84 (299)
T d1ywna1           5 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG   84 (299)
T ss_dssp             HHHHBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             CccccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeee
Confidence            3445555678999999999999999999862      34689999997555555577888999888877 7999999999


Q ss_pred             eeeCC-CceeEEeecccCCChhhhcccccc-------------------------cceeeeeecceeeecC
Q 016905          336 YCTTS-SERILVYPFMQNLSVAYRLRVSHK-------------------------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       336 ~~~~~-~~~~lV~Ey~~~GsL~~~L~~~~~-------------------------~~~~~~aL~yLH~~~i  380 (380)
                      ++..+ +..++|||||++|+|.++|+.++.                         ..+++.||+|||+++|
T Consensus        85 ~~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~i  155 (299)
T d1ywna1          85 ACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKC  155 (299)
T ss_dssp             EECSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eeccCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            98765 468999999999999999975432                         1348999999999886

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.4e-17  Score=151.94  Aligned_cols=110  Identities=22%  Similarity=0.324  Sum_probs=95.2

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCCceeEEee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      +.|+..+.||+|+||+||+|+. .+++.||||+++.. ......+.+.+|+.+++.++|||||++++++...+..++|+|
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~   81 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEee
Confidence            4688889999999999999998 67899999999633 233456889999999999999999999999999999999999


Q ss_pred             cccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      |+.+++|..+++..+..         .+++.||+|||+++|
T Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~q~~~aL~~lH~~~I  122 (292)
T d1unla_          82 FCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNV  122 (292)
T ss_dssp             CCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             eccccccccccccccccchhHHHHHHHHHHHHHHHhhcCCE
Confidence            99999999888755443         348999999999875

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=8.2e-18  Score=156.78  Aligned_cols=105  Identities=20%  Similarity=0.246  Sum_probs=86.0

Q ss_pred             hcCcccc-cccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcC-cCCCCccceeeeeC----CCc
Q 016905          270 TDNFSES-NIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVA-IHKNLLQLIGYCTT----SSE  342 (380)
Q Consensus       270 ~~~~~~~-~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l-~H~Niv~l~g~~~~----~~~  342 (380)
                      .++|... ++||+|+||.||+|+. .+++.||||+++.      .+.+.+|++++.++ +|||||++++++..    ...
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~------~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~   83 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD------CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKC   83 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEC------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEE
T ss_pred             ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECC------cHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCE
Confidence            4577765 4699999999999998 6799999999853      34678899987655 89999999998864    356


Q ss_pred             eeEEeecccCCChhhhccccc--cc---------ceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSH--KI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~--~~---------~~~~~aL~yLH~~~i  380 (380)
                      .++|||||++|+|.++|+.+.  ..         .+++.||+|||+.||
T Consensus        84 ~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~i  132 (335)
T d2ozaa1          84 LLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINI  132 (335)
T ss_dssp             EEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence            899999999999999997643  22         239999999999875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=6.9e-17  Score=138.34  Aligned_cols=118  Identities=25%  Similarity=0.405  Sum_probs=104.5

Q ss_pred             CceeeEecCC-----------CEEEEEeCCCCCcccc-chhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCc
Q 016905           67 SWSHVTCRNG-----------NVISLTLGSNGFSGKI-SPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANN  134 (380)
Q Consensus        67 ~w~gv~c~~~-----------~l~~l~L~~n~l~g~~-p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N  134 (380)
                      .|..|.|++.           .++.|+|++|.|++.+ +..|.++++|+.|+|++|++++..|..+..+++|++|+|++|
T Consensus         9 ~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             ETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             cCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            6888999854           6899999999999866 566899999999999999999999999999999999999999


Q ss_pred             cccccCCccccCCCCCCEEECcCCcccccCccccc---cccccccCCCccccC
Q 016905          135 KFSGSIPATWSQLSNLKHLDLSSNNLTGRIPMQLF---SVATFNFTGTHLICG  184 (380)
Q Consensus       135 ~l~g~iP~~~~~l~~L~~L~ls~N~l~g~~p~~~~---~~~~~~~~gN~~lc~  184 (380)
                      +|++..|..|.++++|+.|+|++|+|++..|..+.   ++..+.+.+|++.|.
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccc
Confidence            99987788999999999999999999987776554   456778889988765

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.5e-17  Score=150.37  Aligned_cols=103  Identities=24%  Similarity=0.303  Sum_probs=81.1

Q ss_pred             cCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHH--HHHHHhcCcCCCCccceeeeeCCC----cee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQR--EVHLISVAIHKNLLQLIGYCTTSS----ERI  344 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~--e~~~l~~l~H~Niv~l~g~~~~~~----~~~  344 (380)
                      +.|...+.||+|+||.||+|++ +|+.||||+++..    ..+++..  |+..+..++|||||+++|+|..++    ..+
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~----~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~   77 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR----EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW   77 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEEECGG----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECcc----chhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEE
Confidence            3456678899999999999998 7899999999532    2334444  445556789999999999998643    578


Q ss_pred             EEeecccCCChhhhccccccc--------ceeeeeecceeee
Q 016905          345 LVYPFMQNLSVAYRLRVSHKI--------YTKIISLSSLHCF  378 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~~--------~~~~~aL~yLH~~  378 (380)
                      +|||||++|+|.++|++....        .+++.||+|||+.
T Consensus        78 lv~Ey~~~g~L~~~l~~~~l~~~~~~~~~~~ia~gl~~lH~~  119 (303)
T d1vjya_          78 LVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHME  119 (303)
T ss_dssp             EEEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCC
T ss_pred             EEEecccCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999864332        2388999999964

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.64  E-value=5.7e-17  Score=150.54  Aligned_cols=106  Identities=19%  Similarity=0.360  Sum_probs=89.2

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCc-CCCCccceeeeeCC--CceeEE
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI-HKNLLQLIGYCTTS--SERILV  346 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~-H~Niv~l~g~~~~~--~~~~lV  346 (380)
                      ++|+..++||+|+||+||+|+. .+|+.||||+++.    ...+.+.+|+++|.+++ ||||+++++++...  ...++|
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~----~~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v  110 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP----VKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV  110 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS----SCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEE
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECH----HHHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEE
Confidence            5788999999999999999998 6799999999853    23577899999999995 99999999998743  458999


Q ss_pred             eecccCCChhhhcccc------cccceeeeeecceeeecC
Q 016905          347 YPFMQNLSVAYRLRVS------HKIYTKIISLSSLHCFSL  380 (380)
Q Consensus       347 ~Ey~~~GsL~~~L~~~------~~~~~~~~aL~yLH~~~i  380 (380)
                      |||+++|+|.++.+.-      ....+++.||+|||++||
T Consensus       111 ~e~~~~~~L~~~~~~l~e~~i~~i~~qil~aL~~LH~~gI  150 (328)
T d3bqca1         111 FEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGI  150 (328)
T ss_dssp             EECCCSCBGGGTTTSCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EeecCCCcHHHHhcCCCHHHHHHHHHHHHHHHHHHhhccc
Confidence            9999999998876532      123559999999999886

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.63  E-value=1.5e-16  Score=146.39  Aligned_cols=113  Identities=31%  Similarity=0.457  Sum_probs=101.2

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      ....++++.+.+.|.+|..++.+++|+.|++++|.++|.+| .++.+++|+.|||++|+|+|.+|.+|+++++|+.|||+
T Consensus       198 ~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls  276 (313)
T d1ogqa_         198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS  276 (313)
T ss_dssp             CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECc
Confidence            44568888888999999999999999999999999998766 58999999999999999999999999999999999999


Q ss_pred             CCcccccCccc--cccccccccCCCccccCCCCCCCC
Q 016905          157 SNNLTGRIPMQ--LFSVATFNFTGTHLICGSSLEQPC  191 (380)
Q Consensus       157 ~N~l~g~~p~~--~~~~~~~~~~gN~~lc~~~~~~~c  191 (380)
                      +|+|+|.+|..  +.++..+++.||+.+||.|.+ +|
T Consensus       277 ~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         277 FNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             SSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             CCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            99999999963  567788899999999998753 55

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6.8e-17  Score=151.15  Aligned_cols=111  Identities=15%  Similarity=0.306  Sum_probs=87.2

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCCC----cee
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS----ERI  344 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~----~~~  344 (380)
                      ++.|+..+.||+|+||+||+|+. .+|+.||||++.........+.+.+|+++|.+++||||+++++++....    ..+
T Consensus         7 ~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~   86 (345)
T d1pmea_           7 GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV   86 (345)
T ss_dssp             CTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             CCCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceE
Confidence            35688899999999999999997 6799999999965434445678999999999999999999999987643    235


Q ss_pred             EEeecccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      +++||+.+|+|.+++....-        ..+++.||+|||++||
T Consensus        87 ~l~~~~~~g~L~~~l~~~~l~~~~i~~i~~qil~al~yLH~~~i  130 (345)
T d1pmea_          87 YLVTHLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANV  130 (345)
T ss_dssp             EEEEECCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEEEeecCCchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence            55667779999999965322        2349999999999875

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=8.4e-17  Score=150.58  Aligned_cols=111  Identities=19%  Similarity=0.325  Sum_probs=90.8

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCC-----Cc
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS-----SE  342 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~-----~~  342 (380)
                      .+.|+..+.||+|+||+||+|+. .+|+.||||++.... +....+.+.+|+++|.+++|||+|++++++...     ..
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~   96 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN   96 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCC
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCc
Confidence            45788899999999999999997 679999999996432 233456789999999999999999999998643     34


Q ss_pred             eeEEeecccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      .++++||+.+|+|.++++.++-        ..+++.||+|||++||
T Consensus        97 ~~~i~~~~~gg~L~~~~~~~~l~e~~~~~i~~qil~aL~~LH~~gi  142 (348)
T d2gfsa1          97 DVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADI  142 (348)
T ss_dssp             CCEEEEECCSEEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eEEEEEeecCCchhhhcccccccHHHHHHHHHHHHHHHHHHHhCCC
Confidence            5677888899999999975432        2349999999999886

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=9.3e-17  Score=150.24  Aligned_cols=110  Identities=24%  Similarity=0.379  Sum_probs=83.4

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCCC------
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTSS------  341 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~~------  341 (380)
                      .+.|+..+.||+|+||+||+|.. .+|+.||||++.... .....+.+.+|+++|++++|||||++++++...+      
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~   96 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT   96 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccc
Confidence            45788899999999999999998 569999999996432 2334677899999999999999999999997654      


Q ss_pred             ceeEEeecccCCChhhhcccccc--------cceeeeeecceeeecC
Q 016905          342 ERILVYPFMQNLSVAYRLRVSHK--------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       342 ~~~lV~Ey~~~GsL~~~L~~~~~--------~~~~~~aL~yLH~~~i  380 (380)
                      ..++||||+ +++|.++++...-        ..+++.||+|||++||
T Consensus        97 ~~~lv~e~~-~~~l~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~I  142 (346)
T d1cm8a_          97 DFYLVMPFM-GTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGI  142 (346)
T ss_dssp             CCEEEEECC-SEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             eEEEEEecc-cccHHHHHHhccccHHHHHHHHHHHHHHHHHHHhCCC
Confidence            469999999 5578777653321        2449999999999875

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.5e-17  Score=151.65  Aligned_cols=110  Identities=17%  Similarity=0.239  Sum_probs=93.1

Q ss_pred             cCcccccccccCCCeeEEEEEe----CCCcEEEEEEecccC---CCchHHHHHHHHHHHhcCcC-CCCccceeeeeCCCc
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL----SDNTKVAVKRLQDYY---SPGGEAAFQREVHLISVAIH-KNLLQLIGYCTTSSE  342 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~----~~g~~vavK~l~~~~---~~~~~~~f~~e~~~l~~l~H-~Niv~l~g~~~~~~~  342 (380)
                      ++|+..+.||+|+||+||+|..    .+|+.||||++....   .....+.+.+|++++.+++| |||+++++++.....
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~  103 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  103 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCc
Confidence            5688999999999999999986    358899999986321   12235678899999999976 899999999999999


Q ss_pred             eeEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      .++|||||.+|+|.++++..+..         .+++.||+|||+++|
T Consensus       104 ~~~v~e~~~~~~L~~~i~~~~~~~e~~~~~~~~Qi~~al~~lH~~~i  150 (322)
T d1vzoa_         104 LHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLGI  150 (322)
T ss_dssp             EEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eeeeeecccccHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcCCE
Confidence            99999999999999999765443         349999999999886

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.9e-17  Score=147.85  Aligned_cols=110  Identities=18%  Similarity=0.330  Sum_probs=90.0

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCC-----chHHHHHHHHHHHhcCc--CCCCccceeeeeCCCc
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSP-----GGEAAFQREVHLISVAI--HKNLLQLIGYCTTSSE  342 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-----~~~~~f~~e~~~l~~l~--H~Niv~l~g~~~~~~~  342 (380)
                      +.|+..++||+|+||+||+|+. .+|+.||||++......     ...+.+.+|+.++.+++  |||||++++++..++.
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~   83 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS   83 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCe
Confidence            4688889999999999999998 67999999998632111     12344778999999986  9999999999999999


Q ss_pred             eeEEeecccC-CChhhhccccccc---------ceeeeeecceeeecC
Q 016905          343 RILVYPFMQN-LSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~-GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                      .++||||+.+ +++.+++......         .+++.||+|||+.+|
T Consensus        84 ~~lv~e~~~~~~~l~~~~~~~~~l~e~~~~~~~~qi~~al~~lH~~~i  131 (273)
T d1xwsa_          84 FVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGV  131 (273)
T ss_dssp             EEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EEEEEEeccCcchHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence            9999999975 6888888654433         349999999999875

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.5e-16  Score=147.05  Aligned_cols=111  Identities=25%  Similarity=0.354  Sum_probs=88.4

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CCCcEEEEEEeccc-CCCchHHHHHHHHHHHhcCcCCCCccceeeeeCC-------
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDY-YSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS-------  340 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~-~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~-------  340 (380)
                      .++|+..+.||+|+||+||+|+. .+|+.||||++... ......+++.+|+++|.+++|||++++++++...       
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~   88 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   88 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--------
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccccc
Confidence            46788899999999999999998 67999999998632 2334467789999999999999999999988653       


Q ss_pred             -CceeEEeecccCCChhhhccccccc---------ceeeeeecceeeecC
Q 016905          341 -SERILVYPFMQNLSVAYRLRVSHKI---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       341 -~~~~lV~Ey~~~GsL~~~L~~~~~~---------~~~~~aL~yLH~~~i  380 (380)
                       +..++||||++++.+..+.......         .+++.||.|||+.+|
T Consensus        89 ~~~~~iv~e~~~~~~~~~~~~~~~~~~~~~~~~i~~qil~~l~~lH~~~i  138 (318)
T d3blha1          89 KGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKI  138 (318)
T ss_dssp             --CEEEEEECCCEEHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             CceEEEEEeccCCCccchhhhcccccccHHHHHHHHHHHHHHHHhccCCE
Confidence             4578999999988777665543332         348999999999875

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.4e-16  Score=149.50  Aligned_cols=109  Identities=21%  Similarity=0.327  Sum_probs=85.7

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccC-CCchHHHHHHHHHHHhcCcCCCCccceeeeeCC------Cc
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYY-SPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS------SE  342 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~------~~  342 (380)
                      +.|+..++||+|+||+||+|+. .+|+.||||++.... .....+.+.+|+.++.+++|||||++++++...      +.
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~   96 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQD   96 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCE
T ss_pred             CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCce
Confidence            5688899999999999999998 579999999996432 233456789999999999999999999998643      56


Q ss_pred             eeEEeecccCCChhhhcccccc-------cceeeeeecceeeecC
Q 016905          343 RILVYPFMQNLSVAYRLRVSHK-------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       343 ~~lV~Ey~~~GsL~~~L~~~~~-------~~~~~~aL~yLH~~~i  380 (380)
                      .++||||+.+|. .+.++....       ..+++.||+|||++||
T Consensus        97 ~~iv~Ey~~~~l-~~~~~~~~~~~~i~~~~~qil~gl~~LH~~gi  140 (355)
T d2b1pa1          97 VYLVMELMDANL-CQVIQMELDHERMSYLLYQMLCGIKHLHSAGI  140 (355)
T ss_dssp             EEEEEECCSEEH-HHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eEEEEeccchHH-HHhhhcCCCHHHHHHHHHHHHHHHHHhhhccc
Confidence            899999997654 444443222       2459999999999986

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.8e-16  Score=147.18  Aligned_cols=104  Identities=23%  Similarity=0.397  Sum_probs=80.5

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeeeeCC------Ccee
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYCTTS------SERI  344 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~~~~------~~~~  344 (380)
                      .|+..++||+|+||+||+|+. .+|+.||||++....     +.+.+|+++|++++|||||++++++...      ...+
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~-----~~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~   95 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK-----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN   95 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-----SSCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccc-----hHHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEE
Confidence            467788999999999999998 579999999996432     1234799999999999999999998542      2468


Q ss_pred             EEeecccCCChhhhcc---cccc---------cceeeeeecceeeecC
Q 016905          345 LVYPFMQNLSVAYRLR---VSHK---------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       345 lV~Ey~~~GsL~~~L~---~~~~---------~~~~~~aL~yLH~~~i  380 (380)
                      +|||||++|.+..+.+   ....         ..+++.||+|||++||
T Consensus        96 lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~I  143 (350)
T d1q5ka_          96 LVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGI  143 (350)
T ss_dssp             EEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred             EEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999998764444332   1111         2459999999999886

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.2e-16  Score=142.41  Aligned_cols=111  Identities=24%  Similarity=0.388  Sum_probs=83.6

Q ss_pred             hcCcccccccccCCCeeEEEEEe-CC-CcEEEEEEecccC-CCchHHHHHHHHHHHhcC---cCCCCccceeeeeC----
Q 016905          270 TDNFSESNIIGQGGFGKVYKGVL-SD-NTKVAVKRLQDYY-SPGGEAAFQREVHLISVA---IHKNLLQLIGYCTT----  339 (380)
Q Consensus       270 ~~~~~~~~~lg~G~~g~Vy~~~~-~~-g~~vavK~l~~~~-~~~~~~~f~~e~~~l~~l---~H~Niv~l~g~~~~----  339 (380)
                      .++|+..+.||+|+||+||+|+. .+ ++.||||++.... .......+.+|+.++..+   +||||+++++++..    
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~   85 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD   85 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECS
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccc
Confidence            46788999999999999999997 34 6789999996322 222344567787776655   79999999999853    


Q ss_pred             -CCceeEEeecccCCChhhhcccccc----------cceeeeeecceeeecC
Q 016905          340 -SSERILVYPFMQNLSVAYRLRVSHK----------IYTKIISLSSLHCFSL  380 (380)
Q Consensus       340 -~~~~~lV~Ey~~~GsL~~~L~~~~~----------~~~~~~aL~yLH~~~i  380 (380)
                       ....+++|||+++|++.........          ..+++.||+|||+++|
T Consensus        86 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~i  137 (305)
T d1blxa_          86 RETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRV  137 (305)
T ss_dssp             SEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence             3457899999998877644432221          2458999999999886

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.48  E-value=4.9e-14  Score=120.18  Aligned_cols=109  Identities=21%  Similarity=0.379  Sum_probs=92.7

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+.+..+..+..+++|++|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|+|+
T Consensus        55 ~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~  134 (192)
T d1w8aa_          55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             eEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccc
Confidence            89999999999999999999999999999999999998888889999999999999999998888899999999999999


Q ss_pred             CCcccccCcccc--ccccccccCCCccccCC
Q 016905          157 SNNLTGRIPMQL--FSVATFNFTGTHLICGS  185 (380)
Q Consensus       157 ~N~l~g~~p~~~--~~~~~~~~~gN~~lc~~  185 (380)
                      +|.+.+..+...  ..+....+.+|...|..
T Consensus       135 ~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~  165 (192)
T d1w8aa_         135 SNPFNCNCHLAWFAEWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             TCCBCCSGGGHHHHHHHHHHCCSGGGCBBCS
T ss_pred             ccccccccchHHHhhhhhhhcccCCCeEeCC
Confidence            999987554322  12333444555555544

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.48  E-value=6.9e-15  Score=134.16  Aligned_cols=106  Identities=18%  Similarity=0.260  Sum_probs=87.7

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcC-CCCccceeeeeCCCceeEEee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIH-KNLLQLIGYCTTSSERILVYP  348 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H-~Niv~l~g~~~~~~~~~lV~E  348 (380)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++....   ....+.+|++.+..++| +|++.+++++..+...++|||
T Consensus         5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~---~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme   81 (293)
T d1csna_           5 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS---DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID   81 (293)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT---TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred             CceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcccc---CcHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEE
Confidence            4688899999999999999998 578999999885432   23457788888888865 899999999999999999999


Q ss_pred             cccCCChhhhccccccc----------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHKI----------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~~----------~~~~~aL~yLH~~~i  380 (380)
                      |+ +|+|.++++.....          .+++.||+|||++||
T Consensus        82 ~~-~~~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH~~gi  122 (293)
T d1csna_          82 LL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSL  122 (293)
T ss_dssp             CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred             ec-CCCHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCCc
Confidence            99 68999998754332          338899999999885

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=1.1e-13  Score=109.51  Aligned_cols=97  Identities=24%  Similarity=0.400  Sum_probs=74.7

Q ss_pred             EEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECcCCc
Q 016905           80 SLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNN  159 (380)
Q Consensus        80 ~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~  159 (380)
                      .|+|++|+++ .++ .++.+++|++|+|++|.|+ .+|+.++.+++|++|++++|+++ .+| .+.++++|+.|++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCc
Confidence            5888888888 444 4888888999999999887 67888888889999999999888 565 48888889999999998


Q ss_pred             ccccCc-ccc---ccccccccCCCcc
Q 016905          160 LTGRIP-MQL---FSVATFNFTGTHL  181 (380)
Q Consensus       160 l~g~~p-~~~---~~~~~~~~~gN~~  181 (380)
                      ++...+ ..+   .++..+++.||+.
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcC
Confidence            874321 233   3446677788875

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=3.4e-14  Score=129.71  Aligned_cols=106  Identities=16%  Similarity=0.264  Sum_probs=82.0

Q ss_pred             cCcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCCCCccceeee-eCCCceeEEee
Q 016905          271 DNFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHKNLLQLIGYC-TTSSERILVYP  348 (380)
Q Consensus       271 ~~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~Niv~l~g~~-~~~~~~~lV~E  348 (380)
                      +.|+..+.||+|+||.||+|+. .+|+.||||++....   ..+++..|++++.+++|+|++..++.+ ...+..++|||
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~---~~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme   83 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT---KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME   83 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCT---TSCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhc---cCHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEE
Confidence            3588889999999999999998 668999999885422   234588999999999888766665554 56778889999


Q ss_pred             cccCCChhhhcccccc-c---------ceeeeeecceeeecC
Q 016905          349 FMQNLSVAYRLRVSHK-I---------YTKIISLSSLHCFSL  380 (380)
Q Consensus       349 y~~~GsL~~~L~~~~~-~---------~~~~~aL~yLH~~~i  380 (380)
                      |+. |++.+.+..... .         .+++.||+|||++||
T Consensus        84 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i  124 (299)
T d1ckia_          84 LLG-PSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNF  124 (299)
T ss_dssp             CCC-CBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             EcC-CchhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHCCe
Confidence            995 567666543322 1         349999999999875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.8e-13  Score=111.54  Aligned_cols=106  Identities=19%  Similarity=0.283  Sum_probs=52.1

Q ss_pred             CceeeEecCCCEEEEEeCCCCCccccchhHhCCccCCeEEcCCCc-CcccCChhhhCCcccCeeeccCccccccCCcccc
Q 016905           67 SWSHVTCRNGNVISLTLGSNGFSGKISPSITKLKFLASLELQDND-LSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWS  145 (380)
Q Consensus        67 ~w~gv~c~~~~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~-l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~  145 (380)
                      .++++.|++          +++. .+|..+.++++|++|++++|+ |+..-+..|.++++|+.|+|++|+|+..-|.+|.
T Consensus         9 ~~~~l~c~~----------~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~   77 (156)
T d2ifga3           9 GSSGLRCTR----------DGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH   77 (156)
T ss_dssp             SSSCEECCS----------SCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGG
T ss_pred             CCCeEEecC----------CCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccc
Confidence            577777764          2222 234444555555555554432 4433334455555555555555555544444555


Q ss_pred             CCCCCCEEECcCCcccccCccc-cc--cccccccCCCccccC
Q 016905          146 QLSNLKHLDLSSNNLTGRIPMQ-LF--SVATFNFTGTHLICG  184 (380)
Q Consensus       146 ~l~~L~~L~ls~N~l~g~~p~~-~~--~~~~~~~~gN~~lc~  184 (380)
                      .+++|+.|||++|+|+ .+|.. +.  .+..+.+.+|++.|.
T Consensus        78 ~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~C~  118 (156)
T d2ifga3          78 FTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCS  118 (156)
T ss_dssp             SCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred             ccccccceeccCCCCc-ccChhhhccccccccccCCCcccCC
Confidence            5555555555555555 23322 11  223445555555443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.7e-13  Score=123.91  Aligned_cols=109  Identities=21%  Similarity=0.267  Sum_probs=96.7

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      ++..+++++|.+++..+..|..+++|+.|+|++|+|++..|..|..+++|+.+++++|++++..|..|..+++|+.||++
T Consensus       130 ~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~  209 (284)
T d1ozna_         130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF  209 (284)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             ccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccc
Confidence            78899999999998777889999999999999999998888899999999999999999999889999999999999999


Q ss_pred             CCcccccCcccccc---ccccccCCCccccCC
Q 016905          157 SNNLTGRIPMQLFS---VATFNFTGTHLICGS  185 (380)
Q Consensus       157 ~N~l~g~~p~~~~~---~~~~~~~gN~~lc~~  185 (380)
                      +|++++..|..+..   +..+++.||++.|.+
T Consensus       210 ~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             SSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             ccccccccccccccccccCEEEecCCCCCCCc
Confidence            99999877766544   567788999998853

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6.8e-13  Score=118.83  Aligned_cols=108  Identities=26%  Similarity=0.351  Sum_probs=85.2

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +++.|+|++|.+.+..+..+..+.+++.|++++|.++...|..+..+++|+.|++++|+|++..|..|..+++|+.|||+
T Consensus       101 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls  180 (266)
T d1p9ag_         101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ  180 (266)
T ss_dssp             TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             ccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecc
Confidence            45566666666665555666666777777777777776666677888999999999999998878889999999999999


Q ss_pred             CCcccccCcccccc---ccccccCCCccccCC
Q 016905          157 SNNLTGRIPMQLFS---VATFNFTGTHLICGS  185 (380)
Q Consensus       157 ~N~l~g~~p~~~~~---~~~~~~~gN~~lc~~  185 (380)
                      +|+|+ .+|..+..   +..+.+.|||+.|++
T Consensus       181 ~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         181 ENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             SSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             cCCCc-ccChhHCCCCCCCEEEecCCCCCCCc
Confidence            99999 88877654   466789999998864

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=8.2e-13  Score=104.30  Aligned_cols=82  Identities=27%  Similarity=0.389  Sum_probs=74.4

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCC--ccccCCCCCCEEE
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIP--ATWSQLSNLKHLD  154 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP--~~~~~l~~L~~L~  154 (380)
                      +|+.|+|++|.++ .+|+.++.+++|+.|++++|.|+. +| .++++++|+.|++++|+++ .+|  ..+..+++|+.||
T Consensus        21 ~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~~~~L~~L~   96 (124)
T d1dcea3          21 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLN   96 (124)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCC-SSSTTGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccC-CCCCchhhcCCCCCCEEE
Confidence            7999999999998 678899999999999999999994 56 4999999999999999999 444  5789999999999


Q ss_pred             CcCCcccc
Q 016905          155 LSSNNLTG  162 (380)
Q Consensus       155 ls~N~l~g  162 (380)
                      +++|+++.
T Consensus        97 l~~N~i~~  104 (124)
T d1dcea3          97 LQGNSLCQ  104 (124)
T ss_dssp             CTTSGGGG
T ss_pred             CCCCcCCc
Confidence            99999984

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=8.8e-13  Score=108.45  Aligned_cols=85  Identities=25%  Similarity=0.207  Sum_probs=75.9

Q ss_pred             CEEEEEeCCCC-CccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEEC
Q 016905           77 NVISLTLGSNG-FSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDL  155 (380)
Q Consensus        77 ~l~~l~L~~n~-l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~l  155 (380)
                      ++++|+|++|+ ++..-+..|.++++|+.|+|++|+|+...|..|..+++|++|||++|+|+ .+|.......+|+.|+|
T Consensus        32 ~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L  110 (156)
T d2ifga3          32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVL  110 (156)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEEC
T ss_pred             ccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhcccccccccc
Confidence            78999998775 88766778999999999999999999888889999999999999999999 77776666668999999


Q ss_pred             cCCcccc
Q 016905          156 SSNNLTG  162 (380)
Q Consensus       156 s~N~l~g  162 (380)
                      ++|.+..
T Consensus       111 ~~Np~~C  117 (156)
T d2ifga3         111 SGNPLHC  117 (156)
T ss_dssp             CSSCCCC
T ss_pred             CCCcccC
Confidence            9999863

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=3e-12  Score=105.88  Aligned_cols=101  Identities=19%  Similarity=0.187  Sum_probs=81.5

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      ++.+|+|++|.++. +|..+..+++|+.|+||+|.++ .++ .+..+++|++|+|++|+++...|..+..+++|+.|+++
T Consensus        19 ~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          19 RDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             SCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             cCcEEECCCCCCCc-cCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccceec
Confidence            78999999999985 5777788999999999999998 565 48899999999999999995444556789999999999


Q ss_pred             CCcccccCc--c---ccccccccccCCCcc
Q 016905          157 SNNLTGRIP--M---QLFSVATFNFTGTHL  181 (380)
Q Consensus       157 ~N~l~g~~p--~---~~~~~~~~~~~gN~~  181 (380)
                      +|+++. ++  .   .+.++..+.+.+|+.
T Consensus        96 ~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          96 NNSLVE-LGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             SCCCCC-GGGGGGGGGCTTCCEEECCSSGG
T ss_pred             cccccc-cccccccccccccchhhcCCCcc
Confidence            999974 22  1   233456667777764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.22  E-value=1.2e-11  Score=112.41  Aligned_cols=105  Identities=24%  Similarity=0.288  Sum_probs=93.0

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +++.|++++|..++..+..|.+++.+++|++++|.+++..|..+.++++|++|+|++|+|+ .||.+|.++++|+.|+|+
T Consensus       172 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls  250 (305)
T d1xkua_         172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH  250 (305)
T ss_dssp             TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred             ccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECC
Confidence            7899999999999999999999999999999999999988999999999999999999999 889999999999999999


Q ss_pred             CCcccccCccc----------cccccccccCCCcccc
Q 016905          157 SNNLTGRIPMQ----------LFSVATFNFTGTHLIC  183 (380)
Q Consensus       157 ~N~l~g~~p~~----------~~~~~~~~~~gN~~lc  183 (380)
                      +|+|+. ++..          ..++..+++.||+.-+
T Consensus       251 ~N~i~~-i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         251 NNNISA-IGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             SSCCCC-CCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             CCccCc-cChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            999984 4322          1334667788888654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.1e-11  Score=111.67  Aligned_cols=89  Identities=24%  Similarity=0.244  Sum_probs=85.0

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +++.|+|++|++++..+..|.++++|+.|++++|++++..|..|..+++|++||+++|++++..|..|+.+++|+.|+++
T Consensus       154 ~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~  233 (284)
T d1ozna_         154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN  233 (284)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred             chhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEec
Confidence            79999999999999889999999999999999999999999999999999999999999998888899999999999999


Q ss_pred             CCcccccCc
Q 016905          157 SNNLTGRIP  165 (380)
Q Consensus       157 ~N~l~g~~p  165 (380)
                      +|.+.+.-+
T Consensus       234 ~N~l~C~C~  242 (284)
T d1ozna_         234 DNPWVCDCR  242 (284)
T ss_dssp             SSCEECSGG
T ss_pred             CCCCCCCcc
Confidence            999998655

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.15  E-value=8.9e-12  Score=105.75  Aligned_cols=102  Identities=6%  Similarity=-0.000  Sum_probs=75.8

Q ss_pred             cccccccCCCeeEEEEEeCCCcEEEEEEecccCCC-----------------chHHHHHHHHHHHhcCcCCCCccceeee
Q 016905          275 ESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSP-----------------GGEAAFQREVHLISVAIHKNLLQLIGYC  337 (380)
Q Consensus       275 ~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~-----------------~~~~~f~~e~~~l~~l~H~Niv~l~g~~  337 (380)
                      ..+.||+|+||+||+|+..+|+.||||+++.....                 .....+..|...+.+++|.+++..+++.
T Consensus         4 vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~~   83 (191)
T d1zara2           4 IGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWE   83 (191)
T ss_dssp             EEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEEE
T ss_pred             hCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEec
Confidence            46889999999999999988999999987521110                 0123456788899999999999887653


Q ss_pred             eCCCceeEEeecccCCChhhhcccc--cccceeeeeecceeeecC
Q 016905          338 TTSSERILVYPFMQNLSVAYRLRVS--HKIYTKIISLSSLHCFSL  380 (380)
Q Consensus       338 ~~~~~~~lV~Ey~~~GsL~~~L~~~--~~~~~~~~aL~yLH~~~i  380 (380)
                          ..+++|||++++.+.++-...  ....+++.+++|||++||
T Consensus        84 ----~~~lvme~~~~~~~~~l~~~~~~~i~~ql~~~l~~lH~~gi  124 (191)
T d1zara2          84 ----GNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHRGI  124 (191)
T ss_dssp             ----TTEEEEECCCCEEGGGCCCSCHHHHHHHHHHHHHHHHHTTE
T ss_pred             ----CCEEEEEeeccccccchhhHHHHHHHHHHHHHHHHHhhCCE
Confidence                247999999987776543221  233569999999999875

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=4.8e-11  Score=106.48  Aligned_cols=85  Identities=22%  Similarity=0.226  Sum_probs=80.6

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      ++..|++++|.+++..+..+..+++|+.|++++|+|++..|..|+.+++|++|||++|+|+ .||.++..+++|+.|+|+
T Consensus       125 ~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~  203 (266)
T d1p9ag_         125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLH  203 (266)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECC
T ss_pred             ccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEec
Confidence            7899999999999887888899999999999999999888888999999999999999999 999999999999999999


Q ss_pred             CCcccc
Q 016905          157 SNNLTG  162 (380)
Q Consensus       157 ~N~l~g  162 (380)
                      +|.+..
T Consensus       204 ~Np~~C  209 (266)
T d1p9ag_         204 GNPWLC  209 (266)
T ss_dssp             SCCBCC
T ss_pred             CCCCCC
Confidence            999875

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=5.6e-11  Score=98.04  Aligned_cols=85  Identities=18%  Similarity=0.231  Sum_probs=73.9

Q ss_pred             CCCEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCC--ccccCCCCCCE
Q 016905           75 NGNVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIP--ATWSQLSNLKH  152 (380)
Q Consensus        75 ~~~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP--~~~~~l~~L~~  152 (380)
                      -.+|+.|+|++|.++. ++ .|..+++|+.|+|++|+++...|..+..+++|+.|+|++|+++ .++  ..+..+++|+.
T Consensus        40 l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~-~~~~l~~l~~l~~L~~  116 (162)
T d1a9na_          40 LDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTY  116 (162)
T ss_dssp             TTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCE
T ss_pred             cccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCccccccccccccceecccccc-ccccccccccccccch
Confidence            3489999999999994 44 5899999999999999999666666788999999999999998 555  36889999999


Q ss_pred             EECcCCcccc
Q 016905          153 LDLSSNNLTG  162 (380)
Q Consensus       153 L~ls~N~l~g  162 (380)
                      |++++|.++.
T Consensus       117 L~l~~N~i~~  126 (162)
T d1a9na_         117 LCILRNPVTN  126 (162)
T ss_dssp             EECCSSGGGG
T ss_pred             hhcCCCcccc
Confidence            9999999873

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=3.7e-11  Score=111.98  Aligned_cols=107  Identities=18%  Similarity=0.163  Sum_probs=77.4

Q ss_pred             CcccccccccCCCeeEEEEEe-CCCcEEEEEEecccCCCchHHHHHHHHHHHhcCc-----------CCCCccceeeeeC
Q 016905          272 NFSESNIIGQGGFGKVYKGVL-SDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI-----------HKNLLQLIGYCTT  339 (380)
Q Consensus       272 ~~~~~~~lg~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~-----------H~Niv~l~g~~~~  339 (380)
                      .|+..++||+|+||+||+|+. .+|+.||||+++..  ....+.+.+|+.++.+++           |+|||++++++..
T Consensus        14 rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~--~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~   91 (362)
T d1q8ya_          14 RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD--KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH   91 (362)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC--HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred             cEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEecc--ccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeee
Confidence            378899999999999999998 67999999999632  223567889999888775           5789999988764


Q ss_pred             --CCceeEEeecccCCChhhhccc-c-----------cccceeeeeecceee-ecC
Q 016905          340 --SSERILVYPFMQNLSVAYRLRV-S-----------HKIYTKIISLSSLHC-FSL  380 (380)
Q Consensus       340 --~~~~~lV~Ey~~~GsL~~~L~~-~-----------~~~~~~~~aL~yLH~-~~i  380 (380)
                        ....+++|+++..+........ .           ....+++.||+|||+ +||
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~I  147 (362)
T d1q8ya_          92 KGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGI  147 (362)
T ss_dssp             EETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             ccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcCc
Confidence              3455667776655443322211 1           112459999999997 654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.97  E-value=4e-10  Score=102.15  Aligned_cols=96  Identities=23%  Similarity=0.339  Sum_probs=77.0

Q ss_pred             CceeeEecCC-----------CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCcc
Q 016905           67 SWSHVTCRNG-----------NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNK  135 (380)
Q Consensus        67 ~w~gv~c~~~-----------~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~  135 (380)
                      .|.+|.|++.           .++.|+|++|+++...+.+|.++++|++|++++|.+....|..|.++++|++|+|++|+
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~   90 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ   90 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred             cCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc
Confidence            7999999863           57788888888886655678888888888888888887778888888888888888888


Q ss_pred             ccccCCccccCCCCCCEEECcCCcccccCc
Q 016905          136 FSGSIPATWSQLSNLKHLDLSSNNLTGRIP  165 (380)
Q Consensus       136 l~g~iP~~~~~l~~L~~L~ls~N~l~g~~p  165 (380)
                      ++ .+|..+.  ..|..|++++|.+.+..+
T Consensus        91 l~-~l~~~~~--~~l~~L~~~~n~l~~l~~  117 (305)
T d1xkua_          91 LK-ELPEKMP--KTLQELRVHENEITKVRK  117 (305)
T ss_dssp             CS-BCCSSCC--TTCCEEECCSSCCCBBCH
T ss_pred             cC-cCccchh--hhhhhhhccccchhhhhh
Confidence            88 6776543  578888888888876443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.93  E-value=6.1e-10  Score=103.64  Aligned_cols=97  Identities=29%  Similarity=0.435  Sum_probs=66.8

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      .+..++++.|.+++.  ..+..+++++.|+|++|++++..|  +..+++|++|+|++|+++ .+| .|+++++|+.||++
T Consensus       286 ~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~  359 (384)
T d2omza2         286 ALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAG  359 (384)
T ss_dssp             TCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECC
T ss_pred             ccccccccccccccc--cccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECC
Confidence            466777777877753  347777888888888888876432  777888888888888887 355 57778888888888


Q ss_pred             CCcccccCc-cccccccccccCCC
Q 016905          157 SNNLTGRIP-MQLFSVATFNFTGT  179 (380)
Q Consensus       157 ~N~l~g~~p-~~~~~~~~~~~~gN  179 (380)
                      +|++++.+| ..+.++..+++++|
T Consensus       360 ~N~l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         360 HNQISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             SSCCCBCGGGTTCTTCSEEECCCE
T ss_pred             CCcCCCChhhccCCCCCEeeCCCC
Confidence            888876554 12334444555544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.84  E-value=2.8e-11  Score=103.35  Aligned_cols=101  Identities=25%  Similarity=0.316  Sum_probs=81.2

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|+++ .++ .+.++++|+.|+|++|.++ .+|..+..+++|+.|++++|+++ .++ .+..+++|+.||++
T Consensus        49 ~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~L~  123 (198)
T d1m9la_          49 ACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMS  123 (198)
T ss_dssp             TCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHHHHHHSSEEEES
T ss_pred             ccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccc-ccc-cccccccccccccc
Confidence            7899999999998 455 5899999999999999998 67877777889999999999999 454 47888999999999


Q ss_pred             CCcccccCc----cccccccccccCCCccc
Q 016905          157 SNNLTGRIP----MQLFSVATFNFTGTHLI  182 (380)
Q Consensus       157 ~N~l~g~~p----~~~~~~~~~~~~gN~~l  182 (380)
                      +|+++..-.    ..+.++..+.+.||+..
T Consensus       124 ~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         124 NNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cchhccccccccccCCCccceeecCCCccc
Confidence            999874211    23345567778888753

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.83  E-value=2.3e-09  Score=99.56  Aligned_cols=96  Identities=25%  Similarity=0.359  Sum_probs=59.1

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +++.|++++|.+++..  .+..++.++.++++.|.+++  +..+..+++++.|+|++|++++..|  +..+++|+.|+++
T Consensus       264 ~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~  337 (384)
T d2omza2         264 KLTELKLGANQISNIS--PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFA  337 (384)
T ss_dssp             TCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECC
T ss_pred             cCCEeeccCcccCCCC--cccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECC
Confidence            5667777777776543  26666777777777777764  2346667777777777777775322  6667777777777


Q ss_pred             CCcccccCccccc---cccccccCCCc
Q 016905          157 SNNLTGRIPMQLF---SVATFNFTGTH  180 (380)
Q Consensus       157 ~N~l~g~~p~~~~---~~~~~~~~gN~  180 (380)
                      +|++++ +| .+.   ++..+++.+|.
T Consensus       338 ~n~l~~-l~-~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         338 NNKVSD-VS-SLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             SSCCCC-CG-GGGGCTTCCEEECCSSC
T ss_pred             CCCCCC-Ch-hHcCCCCCCEEECCCCc
Confidence            777663 33 233   33445555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=2.3e-09  Score=93.56  Aligned_cols=96  Identities=19%  Similarity=0.298  Sum_probs=78.5

Q ss_pred             CceeeEecCC-----------CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCC-hhhhCCcccCeeeccC-
Q 016905           67 SWSHVTCRNG-----------NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLP-DFLGSMTHLQSLNLAN-  133 (380)
Q Consensus        67 ~w~gv~c~~~-----------~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~l~Ls~-  133 (380)
                      .+..|.|++.           ++++|+|++|.++...+..|.++++|++|+|++|.+...+| ..|..+++++.++++. 
T Consensus         9 ~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1           9 SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             CSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             cCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            5677888743           68899999999986555678999999999999999887665 4578899999988764 


Q ss_pred             ccccccCCccccCCCCCCEEECcCCcccc
Q 016905          134 NKFSGSIPATWSQLSNLKHLDLSSNNLTG  162 (380)
Q Consensus       134 N~l~g~iP~~~~~l~~L~~L~ls~N~l~g  162 (380)
                      |+++...|..|.++++|+.|++++|.+..
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCCS
T ss_pred             ccccccccccccccccccccccchhhhcc
Confidence            78887777888999999999999998874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.80  E-value=5.7e-09  Score=88.51  Aligned_cols=79  Identities=28%  Similarity=0.461  Sum_probs=35.2

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +++.|++++|+++. ++ .+..+++|++|+|++|++++..|  ++++++|++|++++|.+. .+| .+..+++|+.|+++
T Consensus        41 ~l~~L~l~~~~i~~-l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~  114 (199)
T d2omxa2          41 QVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLF  114 (199)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECC
T ss_pred             CCCEEECCCCCCCC-cc-ccccCCCcCcCccccccccCccc--ccCCcccccccccccccc-ccc-cccccccccccccc
Confidence            34444444444442 21 24444455555555554443221  444444555555544444 233 14444444444444


Q ss_pred             CCccc
Q 016905          157 SNNLT  161 (380)
Q Consensus       157 ~N~l~  161 (380)
                      +|.+.
T Consensus       115 ~~~~~  119 (199)
T d2omxa2         115 NNQIT  119 (199)
T ss_dssp             SSCCC
T ss_pred             ccccc
Confidence            44443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.71  E-value=7.2e-09  Score=89.62  Aligned_cols=80  Identities=25%  Similarity=0.352  Sum_probs=62.0

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      .+..+.++.+.+....  .+.+.++|+.|++++|.+++..  .++++++|+.|||++|++++ +|. ++++++|++|+|+
T Consensus       130 ~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls  203 (227)
T d1h6ua2         130 NLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLK  203 (227)
T ss_dssp             TCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECT
T ss_pred             chhhhhchhhhhchhh--hhccccccccccccccccccch--hhcccccceecccCCCccCC-Chh-hcCCCCCCEEECc
Confidence            5677888888776544  3677888888888888887533  37888888888888888884 554 7888888888888


Q ss_pred             CCcccc
Q 016905          157 SNNLTG  162 (380)
Q Consensus       157 ~N~l~g  162 (380)
                      +|++++
T Consensus       204 ~N~lt~  209 (227)
T d1h6ua2         204 NNQISD  209 (227)
T ss_dssp             TSCCCB
T ss_pred             CCcCCC
Confidence            888884

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.69  E-value=1.4e-08  Score=86.84  Aligned_cols=79  Identities=23%  Similarity=0.332  Sum_probs=44.5

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      .++.|++++|.++.. + .+..+++|++|+|++|++++ +| .++.+++|+.|++++|+++ .+| .+..+++|+.|+++
T Consensus        47 ~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-cccccccccccccc
Confidence            455566666665532 2 25556666666666666654 33 2455666666666666665 344 35556666666666


Q ss_pred             CCccc
Q 016905          157 SNNLT  161 (380)
Q Consensus       157 ~N~l~  161 (380)
                      +|.+.
T Consensus       121 ~~~~~  125 (210)
T d1h6ta2         121 HNGIS  125 (210)
T ss_dssp             TSCCC
T ss_pred             ccccc
Confidence            66554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.69  E-value=2.2e-08  Score=84.74  Aligned_cols=80  Identities=25%  Similarity=0.441  Sum_probs=66.4

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++..|  ++++++|+.|++++|.+. .+| .+.++++|+.|++++|++....  .+..+++|+.|+++
T Consensus        63 nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~  136 (199)
T d2omxa2          63 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELS  136 (199)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECC
T ss_pred             CcCcCccccccccCccc--ccCCcccccccccccccc-ccc-cccccccccccccccccccccc--ccchhhhhHHhhhh
Confidence            89999999999987543  899999999999999987 455 3788899999999998888532  47788899999999


Q ss_pred             CCcccc
Q 016905          157 SNNLTG  162 (380)
Q Consensus       157 ~N~l~g  162 (380)
                      +|++..
T Consensus       137 ~n~l~~  142 (199)
T d2omxa2         137 SNTISD  142 (199)
T ss_dssp             SSCCCC
T ss_pred             hhhhcc
Confidence            988863

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.68  E-value=4.6e-10  Score=95.57  Aligned_cols=85  Identities=26%  Similarity=0.295  Sum_probs=73.3

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCC--ccccCCCCCCEEE
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIP--ATWSQLSNLKHLD  154 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP--~~~~~l~~L~~L~  154 (380)
                      +|+.|+|++|.++ .+|..+..+++|+.|++++|+++. ++ .+..+++|++|+|++|+++ .++  ..+..+++|+.|+
T Consensus        71 ~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~  146 (198)
T d1m9la_          71 NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLL  146 (198)
T ss_dssp             TCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH-HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEE
T ss_pred             cccChhhcccccc-cccccccccccccccccccccccc-cc-cccccccccccccccchhc-cccccccccCCCccceee
Confidence            8999999999997 577777777899999999999984 44 5889999999999999998 444  4689999999999


Q ss_pred             CcCCcccccCc
Q 016905          155 LSSNNLTGRIP  165 (380)
Q Consensus       155 ls~N~l~g~~p  165 (380)
                      |++|++....+
T Consensus       147 L~~N~l~~~~~  157 (198)
T d1m9la_         147 LAGNPLYNDYK  157 (198)
T ss_dssp             ECSSHHHHHHC
T ss_pred             cCCCccccCcc
Confidence            99999875443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.65  E-value=2.9e-08  Score=84.76  Aligned_cols=97  Identities=29%  Similarity=0.368  Sum_probs=70.7

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +|+.|+|++|.+++..  .++.+++|+.|++++|++++ +| .+..+++|+.|++++|.++ .++ .+..+++|+.++++
T Consensus        69 ~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~-~~~-~l~~l~~l~~l~~~  142 (210)
T d1h6ta2          69 NVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLG  142 (210)
T ss_dssp             TCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC-CCG-GGGGCTTCCEEECC
T ss_pred             CCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-ccccccccccccccccccc-ccc-cccccccccccccc
Confidence            7899999999998743  36889999999999999984 55 4888899999999998886 443 46777777788877


Q ss_pred             CCcccccCc-cccccccccccCCC
Q 016905          157 SNNLTGRIP-MQLFSVATFNFTGT  179 (380)
Q Consensus       157 ~N~l~g~~p-~~~~~~~~~~~~gN  179 (380)
                      +|.+++..+ ..+.++..+.+.+|
T Consensus       143 ~n~l~~~~~~~~l~~L~~l~l~~n  166 (210)
T d1h6ta2         143 NNKITDITVLSRLTKLDTLSLEDN  166 (210)
T ss_dssp             SSCCCCCGGGGGCTTCSEEECCSS
T ss_pred             cccccccccccccccccccccccc
Confidence            777764322 12334444455554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.59  E-value=3.7e-08  Score=84.95  Aligned_cols=97  Identities=24%  Similarity=0.343  Sum_probs=61.7

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +++.++++++...+..  .+...+.++.+.++.+.+....+  +..+++|+.|++++|++++..  .++++++|+.|||+
T Consensus       108 ~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls  181 (227)
T d1h6ua2         108 SIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKAD  181 (227)
T ss_dssp             TCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECC
T ss_pred             cccccccccccccccc--hhccccchhhhhchhhhhchhhh--hccccccccccccccccccch--hhcccccceecccC
Confidence            5677777777666543  35566777777777777764332  566777777777777776432  26777777777777


Q ss_pred             CCcccccCcc--ccccccccccCCCc
Q 016905          157 SNNLTGRIPM--QLFSVATFNFTGTH  180 (380)
Q Consensus       157 ~N~l~g~~p~--~~~~~~~~~~~gN~  180 (380)
                      +|++++ +|.  .+.++..+.+.+|.
T Consensus       182 ~n~l~~-l~~l~~l~~L~~L~Ls~N~  206 (227)
T d1h6ua2         182 DNKISD-ISPLASLPNLIEVHLKNNQ  206 (227)
T ss_dssp             SSCCCC-CGGGGGCTTCCEEECTTSC
T ss_pred             CCccCC-ChhhcCCCCCCEEECcCCc
Confidence            777764 332  23344555555553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.45  E-value=8.5e-08  Score=87.33  Aligned_cols=76  Identities=28%  Similarity=0.416  Sum_probs=48.0

Q ss_pred             CEEEEEeCCCCCccccchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECc
Q 016905           77 NVISLTLGSNGFSGKISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLS  156 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls  156 (380)
                      +++.|+|++|+|+ .+|..   +.+|+.|++++|+++ .++.-   .+.|++|||++|+++ .+|. ++.+++|+.|+++
T Consensus        59 ~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~  128 (353)
T d1jl5a_          59 HLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVD  128 (353)
T ss_dssp             TCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECC
T ss_pred             CCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---ccccccccccccccc-cccc-hhhhccceeeccc
Confidence            5666777777666 55543   345666666666665 33321   134777777777777 5664 5677777777777


Q ss_pred             CCcccc
Q 016905          157 SNNLTG  162 (380)
Q Consensus       157 ~N~l~g  162 (380)
                      +|.++.
T Consensus       129 ~~~~~~  134 (353)
T d1jl5a_         129 NNSLKK  134 (353)
T ss_dssp             SSCCSC
T ss_pred             cccccc
Confidence            777663

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=7.1e-08  Score=78.85  Aligned_cols=77  Identities=22%  Similarity=0.245  Sum_probs=58.5

Q ss_pred             CccccchhHhCCccCCeEEcCCCcCccc--CChhhhCCcccCeeeccCccccccCCc-cccCCCCCCEEECcCCcccccC
Q 016905           88 FSGKISPSITKLKFLASLELQDNDLSGT--LPDFLGSMTHLQSLNLANNKFSGSIPA-TWSQLSNLKHLDLSSNNLTGRI  164 (380)
Q Consensus        88 l~g~~p~~~~~l~~L~~L~Ls~N~l~g~--~p~~~~~l~~L~~l~Ls~N~l~g~iP~-~~~~l~~L~~L~ls~N~l~g~~  164 (380)
                      +...++..+..+++|++|+||+|+|+..  ++..+..+++|+.||||+|+++ .+++ .+....+|+.|++++|.++...
T Consensus        53 ~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          53 MAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             HHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSS
T ss_pred             HhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCc
Confidence            3445555667789999999999999853  4566788999999999999998 4544 4445567899999999988654


Q ss_pred             c
Q 016905          165 P  165 (380)
Q Consensus       165 p  165 (380)
                      .
T Consensus       132 ~  132 (162)
T d1koha1         132 R  132 (162)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=4.1e-08  Score=80.34  Aligned_cols=78  Identities=24%  Similarity=0.243  Sum_probs=53.3

Q ss_pred             CEEEEEeCCCCCccc--cchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCcc-------ccCC
Q 016905           77 NVISLTLGSNGFSGK--ISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPAT-------WSQL  147 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~--~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~-------~~~l  147 (380)
                      .|+.|+|++|+++..  ++..+..+++|+.|+|++|.++..-+-......+|+.|+|++|.++......       +..+
T Consensus        66 ~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~  145 (162)
T d1koha1          66 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERF  145 (162)
T ss_dssp             TCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTS
T ss_pred             CCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHC
Confidence            677888888888753  3455777888888888888887433323334456788888888887655532       5567


Q ss_pred             CCCCEEE
Q 016905          148 SNLKHLD  154 (380)
Q Consensus       148 ~~L~~L~  154 (380)
                      ++|+.||
T Consensus       146 P~L~~LD  152 (162)
T d1koha1         146 PKLLRLD  152 (162)
T ss_dssp             TTCCEET
T ss_pred             CCCCEEC
Confidence            7888776

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.23  E-value=1.3e-06  Score=79.07  Aligned_cols=60  Identities=28%  Similarity=0.398  Sum_probs=48.7

Q ss_pred             CCccCCeEEcCCCcCcccCChhhhCCcccCeeeccCccccccCCccccCCCCCCEEECcCCcccccCcc
Q 016905           98 KLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLANNKFSGSIPATWSQLSNLKHLDLSSNNLTGRIPM  166 (380)
Q Consensus        98 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~~p~  166 (380)
                      .+++|++|+|++|+|+ .+|..   +++|+.|+|++|+|+ .+|..   +.+|+.|++++|+++ .+|.
T Consensus       282 ~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         282 LPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred             cCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCc
Confidence            4578999999999998 67853   678899999999998 78864   467899999999987 5554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=5.1e-07  Score=84.87  Aligned_cols=86  Identities=28%  Similarity=0.376  Sum_probs=52.8

Q ss_pred             CEEEEEeCCCCCcc----ccchhHhCCccCCeEEcCCCcCccc----CChhhh-CCcccCeeeccCcccccc----CCcc
Q 016905           77 NVISLTLGSNGFSG----KISPSITKLKFLASLELQDNDLSGT----LPDFLG-SMTHLQSLNLANNKFSGS----IPAT  143 (380)
Q Consensus        77 ~l~~l~L~~n~l~g----~~p~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~-~l~~L~~l~Ls~N~l~g~----iP~~  143 (380)
                      +++.|+|++|+++.    .++..+..+++|++|||++|.|+..    +...+. ...+|++|+|++|+++..    ++..
T Consensus        28 ~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~  107 (460)
T d1z7xw1          28 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST  107 (460)
T ss_dssp             TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             CCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccch
Confidence            45667777777663    3445566677777777777776521    112221 124577777777777643    4556


Q ss_pred             ccCCCCCCEEECcCCcccc
Q 016905          144 WSQLSNLKHLDLSSNNLTG  162 (380)
Q Consensus       144 ~~~l~~L~~L~ls~N~l~g  162 (380)
                      +..+++|+.|+|++|.++.
T Consensus       108 l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1         108 LRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TTSCTTCCEEECCSSBCHH
T ss_pred             hhccccccccccccccchh
Confidence            6677777777777777653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=6.1e-07  Score=80.00  Aligned_cols=85  Identities=25%  Similarity=0.292  Sum_probs=70.0

Q ss_pred             CEEEEEeCCCCCccc-cchhHhCCccCCeEEcCCCcCcccCChhhhCCcccCeeeccC-cccccc-CCccccCCCCCCEE
Q 016905           77 NVISLTLGSNGFSGK-ISPSITKLKFLASLELQDNDLSGTLPDFLGSMTHLQSLNLAN-NKFSGS-IPATWSQLSNLKHL  153 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~-~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l~Ls~-N~l~g~-iP~~~~~l~~L~~L  153 (380)
                      +++.|||+++.+++. ++..+.++++|++|+|+++.+++..+..++++++|++|+|++ +.++.. +..-+..+++|++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            799999999998865 455678899999999999999999999999999999999999 466632 33334578999999


Q ss_pred             ECcCC-ccc
Q 016905          154 DLSSN-NLT  161 (380)
Q Consensus       154 ~ls~N-~l~  161 (380)
                      +++++ +++
T Consensus       127 ~ls~c~~~~  135 (284)
T d2astb2         127 NLSWCFDFT  135 (284)
T ss_dssp             ECCCCTTCC
T ss_pred             ccccccccc
Confidence            99984 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=7.8e-07  Score=83.52  Aligned_cols=104  Identities=18%  Similarity=0.265  Sum_probs=77.9

Q ss_pred             CEEEEEeCCCCCcccc-chhHhCCccCCeEEcCCCcCcc----cCChhhhCCcccCeeeccCcccccc----CCccccC-
Q 016905           77 NVISLTLGSNGFSGKI-SPSITKLKFLASLELQDNDLSG----TLPDFLGSMTHLQSLNLANNKFSGS----IPATWSQ-  146 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~~-p~~~~~l~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~l~Ls~N~l~g~----iP~~~~~-  146 (380)
                      +|+.||+++|++++.. ..-+..+++|+.|+|++|.++-    .++..+..+++|+.|||++|+++..    +...+.. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            5899999999999853 5557788999999999999973    4667788999999999999999632    2333332 


Q ss_pred             CCCCCEEECcCCccccc----Ccccc---ccccccccCCCc
Q 016905          147 LSNLKHLDLSSNNLTGR----IPMQL---FSVATFNFTGTH  180 (380)
Q Consensus       147 l~~L~~L~ls~N~l~g~----~p~~~---~~~~~~~~~gN~  180 (380)
                      ..+|+.|+|++|+++..    ++..+   .++..+.+.+|.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             CCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence            35799999999999753    23222   334556666665

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=6.4e-06  Score=70.89  Aligned_cols=91  Identities=19%  Similarity=0.169  Sum_probs=59.3

Q ss_pred             EEeCCCCCccccchhHhCCc-cCCeEEcCCCcCcccCChhhhCCcccCee-eccCccccccCCc-cccCCCCCCEEECcC
Q 016905           81 LTLGSNGFSGKISPSITKLK-FLASLELQDNDLSGTLPDFLGSMTHLQSL-NLANNKFSGSIPA-TWSQLSNLKHLDLSS  157 (380)
Q Consensus        81 l~L~~n~l~g~~p~~~~~l~-~L~~L~Ls~N~l~g~~p~~~~~l~~L~~l-~Ls~N~l~g~iP~-~~~~l~~L~~L~ls~  157 (380)
                      +..+++.+...-+..+.+++ .++.|++++|+++ .++....+.++++.+ ++++|+++ .||. .|.++++|+.|||++
T Consensus       133 ~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-~i~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~  210 (242)
T d1xwdc1         133 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISR  210 (242)
T ss_dssp             EEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTT
T ss_pred             ccccccccccccccccccccccceeeeccccccc-ccccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCC
Confidence            33344444433334444444 6777899999998 455555566666555 57888888 5654 588899999999999


Q ss_pred             CcccccCcc-cccccccc
Q 016905          158 NNLTGRIPM-QLFSVATF  174 (380)
Q Consensus       158 N~l~g~~p~-~~~~~~~~  174 (380)
                      |+|+ .+|. .+.++..+
T Consensus       211 N~l~-~l~~~~~~~l~~L  227 (242)
T d1xwdc1         211 TRIH-SLPSYGLENLKKL  227 (242)
T ss_dssp             SCCC-CCCSSSCTTCCEE
T ss_pred             CcCC-ccCHHHHcCCccc
Confidence            9998 4543 34444433

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=5e-06  Score=73.83  Aligned_cols=61  Identities=20%  Similarity=0.178  Sum_probs=26.7

Q ss_pred             CCccCCeEEcCCC-cCcccCChhhhCCcccCeeeccC-ccccccCCccccCCCCCCEEECcCC
Q 016905           98 KLKFLASLELQDN-DLSGTLPDFLGSMTHLQSLNLAN-NKFSGSIPATWSQLSNLKHLDLSSN  158 (380)
Q Consensus        98 ~l~~L~~L~Ls~N-~l~g~~p~~~~~l~~L~~l~Ls~-N~l~g~iP~~~~~l~~L~~L~ls~N  158 (380)
                      ++++|++|+|++| .+++..+..++++++|++|+|++ +++++..+..++++++|+.|+++++
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            3444444444442 24444444444444444444444 2344433344444444444444443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.85  E-value=3.1e-06  Score=77.14  Aligned_cols=85  Identities=20%  Similarity=0.319  Sum_probs=41.3

Q ss_pred             CEEEEEeCCCCCccc----cchhHhCCccCCeEEcCCCcCccc-----CChhhhCCcccCeeeccCcccccc----CCcc
Q 016905           77 NVISLTLGSNGFSGK----ISPSITKLKFLASLELQDNDLSGT-----LPDFLGSMTHLQSLNLANNKFSGS----IPAT  143 (380)
Q Consensus        77 ~l~~l~L~~n~l~g~----~p~~~~~l~~L~~L~Ls~N~l~g~-----~p~~~~~l~~L~~l~Ls~N~l~g~----iP~~  143 (380)
                      .+..+++++|.++..    +...+...+.|+.|+|++|.++..     +...+..+++|+.|+|++|+++..    +...
T Consensus       159 ~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~  238 (344)
T d2ca6a1         159 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA  238 (344)
T ss_dssp             CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred             ccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccc
Confidence            455555555555422    223334455555555555555421     222344455555555555555422    2333


Q ss_pred             ccCCCCCCEEECcCCccc
Q 016905          144 WSQLSNLKHLDLSSNNLT  161 (380)
Q Consensus       144 ~~~l~~L~~L~ls~N~l~  161 (380)
                      +...++|+.|+|++|.++
T Consensus       239 l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         239 LKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             GGGCTTCCEEECTTCCCC
T ss_pred             ccccccchhhhhhcCccC
Confidence            445555555555555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.66  E-value=8.4e-06  Score=74.17  Aligned_cols=86  Identities=23%  Similarity=0.259  Sum_probs=57.1

Q ss_pred             CEEEEEeCCCCCc----ccc---------chhHhCCccCCeEEcCCCcCcc----cCChhhhCCcccCeeeccCcccccc
Q 016905           77 NVISLTLGSNGFS----GKI---------SPSITKLKFLASLELQDNDLSG----TLPDFLGSMTHLQSLNLANNKFSGS  139 (380)
Q Consensus        77 ~l~~l~L~~n~l~----g~~---------p~~~~~l~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~l~Ls~N~l~g~  139 (380)
                      +++.|+|++|.++    ..+         .......+.|+.|++++|.++.    .+...+...+.|+.|+|++|+++..
T Consensus       122 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  201 (344)
T d2ca6a1         122 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE  201 (344)
T ss_dssp             TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH
T ss_pred             cchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhccccccccccccc
Confidence            7888888888752    111         1122456778888888887753    2444556677888888888887632


Q ss_pred             -----CCccccCCCCCCEEECcCCcccc
Q 016905          140 -----IPATWSQLSNLKHLDLSSNNLTG  162 (380)
Q Consensus       140 -----iP~~~~~l~~L~~L~ls~N~l~g  162 (380)
                           +...+..+++|+.|||++|.++.
T Consensus       202 g~~~~l~~~l~~~~~L~~L~Ls~N~i~~  229 (344)
T d2ca6a1         202 GIEHLLLEGLAYCQELKVLDLQDNTFTH  229 (344)
T ss_dssp             HHHHHHHTTGGGCTTCCEEECCSSCCHH
T ss_pred             ccccchhhhhcchhhhcccccccccccc
Confidence                 33456677888888888888753

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.59  E-value=2.6e-05  Score=63.39  Aligned_cols=85  Identities=11%  Similarity=0.198  Sum_probs=64.8

Q ss_pred             CEEEEEeCCC-CCccc----cchhHhCCccCCeEEcCCCcCcc----cCChhhhCCcccCeeeccCccccccC----Ccc
Q 016905           77 NVISLTLGSN-GFSGK----ISPSITKLKFLASLELQDNDLSG----TLPDFLGSMTHLQSLNLANNKFSGSI----PAT  143 (380)
Q Consensus        77 ~l~~l~L~~n-~l~g~----~p~~~~~l~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~l~Ls~N~l~g~i----P~~  143 (380)
                      .|++|+|+++ .++..    +-..+...+.|+.|+|++|.++.    .+...+...+.|+.|+|++|+++..-    =..
T Consensus        16 ~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~a   95 (167)
T d1pgva_          16 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS   95 (167)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHH
Confidence            7899999974 56543    33456677899999999999974    23345667789999999999998542    234


Q ss_pred             ccCCCCCCEEECcCCccc
Q 016905          144 WSQLSNLKHLDLSSNNLT  161 (380)
Q Consensus       144 ~~~l~~L~~L~ls~N~l~  161 (380)
                      +..-++|+.|++++|.+.
T Consensus        96 L~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          96 TLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             TTTTCCCSEEECCCCSSC
T ss_pred             HHhCCcCCEEECCCCcCC
Confidence            667789999999999765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.05  E-value=0.00013  Score=58.93  Aligned_cols=85  Identities=14%  Similarity=0.103  Sum_probs=64.1

Q ss_pred             CCEEEEEeCCCCCcccc----chhHhCCccCCeEEcCCCcCccc----CChhhhCCcccCeeeccCccccc-------cC
Q 016905           76 GNVISLTLGSNGFSGKI----SPSITKLKFLASLELQDNDLSGT----LPDFLGSMTHLQSLNLANNKFSG-------SI  140 (380)
Q Consensus        76 ~~l~~l~L~~n~l~g~~----p~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~l~Ls~N~l~g-------~i  140 (380)
                      ..|+.|+|++|.++..-    ...+...+.|+.|+|++|.++..    +-..+...+.|++|+|++|++..       .+
T Consensus        44 ~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l  123 (167)
T d1pgva_          44 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM  123 (167)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred             CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHH
Confidence            37999999999997543    34455678999999999999853    23456677889999999997652       13


Q ss_pred             CccccCCCCCCEEECcCCcc
Q 016905          141 PATWSQLSNLKHLDLSSNNL  160 (380)
Q Consensus       141 P~~~~~l~~L~~L~ls~N~l  160 (380)
                      ...+..-++|+.|+++.+..
T Consensus       124 ~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         124 MMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhCCCccEeeCcCCCc
Confidence            44556678999999977653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.18  E-value=0.0012  Score=52.79  Aligned_cols=85  Identities=18%  Similarity=0.273  Sum_probs=55.2

Q ss_pred             CEEEEEeCC-CCCcccc----chhHhCCccCCeEEcCCCcCccc----CChhhhCCcccCeeeccCcccccc----CCcc
Q 016905           77 NVISLTLGS-NGFSGKI----SPSITKLKFLASLELQDNDLSGT----LPDFLGSMTHLQSLNLANNKFSGS----IPAT  143 (380)
Q Consensus        77 ~l~~l~L~~-n~l~g~~----p~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~l~Ls~N~l~g~----iP~~  143 (380)
                      .|+.|+|++ +.++...    -..+...++|++|+|++|.++..    +-..+...++|+.+++++|.++..    +-..
T Consensus        18 ~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~   97 (166)
T d1io0a_          18 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA   97 (166)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred             CCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHH
Confidence            677888886 4565432    33455678888888888887643    223455667888888888887643    2245


Q ss_pred             ccCCCCCCEEEC--cCCccc
Q 016905          144 WSQLSNLKHLDL--SSNNLT  161 (380)
Q Consensus       144 ~~~l~~L~~L~l--s~N~l~  161 (380)
                      +...++|+.++|  ++|.+.
T Consensus        98 l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          98 LQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             GGGCSSCCEEECCCCSSCCC
T ss_pred             HHhCccccEEeeccCCCcCc
Confidence            666777876555  455554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.04  E-value=0.0011  Score=53.11  Aligned_cols=86  Identities=17%  Similarity=0.181  Sum_probs=65.3

Q ss_pred             CCEEEEEeCCCCCccccc----hhHhCCccCCeEEcCCCcCccc----CChhhhCCcccCee--eccCccccc----cCC
Q 016905           76 GNVISLTLGSNGFSGKIS----PSITKLKFLASLELQDNDLSGT----LPDFLGSMTHLQSL--NLANNKFSG----SIP  141 (380)
Q Consensus        76 ~~l~~l~L~~n~l~g~~p----~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~l--~Ls~N~l~g----~iP  141 (380)
                      ..|+.|+|++|.++..--    ..+...+.++.|++++|.++..    +-..+...++|+.+  ++++|++..    .|-
T Consensus        46 ~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La  125 (166)
T d1io0a_          46 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA  125 (166)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred             CccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHH
Confidence            379999999999976533    4456679999999999998743    33566778889864  556788754    355


Q ss_pred             ccccCCCCCCEEECcCCccc
Q 016905          142 ATWSQLSNLKHLDLSSNNLT  161 (380)
Q Consensus       142 ~~~~~l~~L~~L~ls~N~l~  161 (380)
                      ..+...++|+.|+++.|...
T Consensus       126 ~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_         126 NMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCcCEEeCcCCCCc
Confidence            56778899999999877643

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.46  E-value=0.0092  Score=50.75  Aligned_cols=112  Identities=14%  Similarity=0.107  Sum_probs=69.9

Q ss_pred             HHHHHhcCcccccccccCCCeeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCc-CCCCccceeeeeCCCce
Q 016905          265 ELQLATDNFSESNIIGQGGFGKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAI-HKNLLQLIGYCTTSSER  343 (380)
Q Consensus       265 ~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~-H~Niv~l~g~~~~~~~~  343 (380)
                      ++....+.|+.....+-++.+.||+... ++..+.+|+..... ......+.+|...+..++ +--+.+++++...++..
T Consensus         8 ~l~~~~~~~~~~~~~~G~s~~~v~rv~~-~~~~~vlk~~~~~~-~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~   85 (263)
T d1j7la_           8 ELKKLIEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRY-KGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWS   85 (263)
T ss_dssp             HHHHHHTTSEEEECSCCCSSSEEEEEEC-SSCEEEEEEECGGG-TTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEE
T ss_pred             HHHHhhhceEEEEcCCCCCCCcEEEEEe-CCCeEEEEEcCCCc-ccchhhHHHHHHHHHHHhccCCCCcEEEEEecCCce
Confidence            4555555665554433344468998875 56667888875321 222345677888776653 33356778888888889


Q ss_pred             eEEeecccCCChhhhcccccc----cceeeeeecceeee
Q 016905          344 ILVYPFMQNLSVAYRLRVSHK----IYTKIISLSSLHCF  378 (380)
Q Consensus       344 ~lV~Ey~~~GsL~~~L~~~~~----~~~~~~aL~yLH~~  378 (380)
                      ++||||+++.++.+.......    ..++...++.||+.
T Consensus        86 ~lv~~~l~G~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~  124 (263)
T d1j7la_          86 NLLMSEADGVLCSEEYEDEQSPEKIIELYAECIRLFHSI  124 (263)
T ss_dssp             EEEEECCSSEEHHHHTTTCSCHHHHHHHHHHHHHHHHTS
T ss_pred             EEEEEecccccccccccccccHHHHHHHHHHHHHHHhcc
Confidence            999999999888765433221    12244556666653

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=92.06  E-value=0.083  Score=44.17  Aligned_cols=76  Identities=12%  Similarity=0.010  Sum_probs=53.6

Q ss_pred             cccCCC-eeEEEEEeCCCcEEEEEEecccCCCchHHHHHHHHHHHhcCcCC--CCccceeeeeCCCceeEEeecccCCCh
Q 016905          279 IGQGGF-GKVYKGVLSDNTKVAVKRLQDYYSPGGEAAFQREVHLISVAIHK--NLLQLIGYCTTSSERILVYPFMQNLSV  355 (380)
Q Consensus       279 lg~G~~-g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~f~~e~~~l~~l~H~--Niv~l~g~~~~~~~~~lV~Ey~~~GsL  355 (380)
                      +..|.. +.||+...+++..+.+|.-...    ....+..|.+.+..+...  .+.++++++..++..++||||+++-++
T Consensus        18 ~~~G~s~~~v~r~~~~~~~~~vlK~~~~~----~~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G~~~   93 (255)
T d1nd4a_          18 QTIGCSDAAVFRLSAQGRPVLFVKTDLSG----ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDL   93 (255)
T ss_dssp             CSCTTSSCEEEEEECTTSCCEEEEEECSC----TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEET
T ss_pred             cCCcccCCeEEEEEeCCCCEEEEEeCCcc----CHhHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeecccc
Confidence            344443 6799998877888889976432    223466777777766433  356778888888888999999998777


Q ss_pred             hhh
Q 016905          356 AYR  358 (380)
Q Consensus       356 ~~~  358 (380)
                      .+.
T Consensus        94 ~~~   96 (255)
T d1nd4a_          94 LSS   96 (255)
T ss_dssp             TTS
T ss_pred             ccc
Confidence            653

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=80.52  E-value=1.2  Score=39.58  Aligned_cols=78  Identities=14%  Similarity=0.136  Sum_probs=47.6

Q ss_pred             ccccccCCCeeEEEEEeCC-CcEEEEEEecccC------CCchHHHHHHHHHHHhcCc-C--CCCccceeeeeCCCceeE
Q 016905          276 SNIIGQGGFGKVYKGVLSD-NTKVAVKRLQDYY------SPGGEAAFQREVHLISVAI-H--KNLLQLIGYCTTSSERIL  345 (380)
Q Consensus       276 ~~~lg~G~~g~Vy~~~~~~-g~~vavK~l~~~~------~~~~~~~f~~e~~~l~~l~-H--~Niv~l~g~~~~~~~~~l  345 (380)
                      .+.||.|....||+...++ ++.+.||.-....      -.........|.+.|..+. +  ..+.+++++  +++..++
T Consensus        31 ~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~--d~~~~~l  108 (392)
T d2pula1          31 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT  108 (392)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred             EEEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEE--cCCCCEE
Confidence            3458999999999998744 6789999653210      1112233456777776552 2  335555554  3456789


Q ss_pred             EeecccCCCh
Q 016905          346 VYPFMQNLSV  355 (380)
Q Consensus       346 V~Ey~~~GsL  355 (380)
                      ||||+++..+
T Consensus       109 vmE~L~~~~~  118 (392)
T d2pula1         109 VMEDLSHLKI  118 (392)
T ss_dssp             EECCCTTSEE
T ss_pred             EEeccCCccc
Confidence            9999986553