Citrus Sinensis ID: 016909
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 380 | 2.2.26 [Sep-21-2011] | |||||||
| Q54M22 | 441 | 2-oxoisovalerate dehydrog | yes | no | 0.955 | 0.823 | 0.502 | 1e-111 | |
| O45924 | 431 | 2-oxoisovalerate dehydrog | yes | no | 0.955 | 0.842 | 0.509 | 1e-109 | |
| A5A6H9 | 445 | 2-oxoisovalerate dehydrog | yes | no | 0.986 | 0.842 | 0.485 | 1e-107 | |
| Q8HXY4 | 445 | 2-oxoisovalerate dehydrog | N/A | no | 0.986 | 0.842 | 0.482 | 1e-107 | |
| P12694 | 445 | 2-oxoisovalerate dehydrog | yes | no | 0.986 | 0.842 | 0.48 | 1e-106 | |
| P11960 | 441 | 2-oxoisovalerate dehydrog | yes | no | 0.986 | 0.850 | 0.48 | 1e-106 | |
| P50136 | 442 | 2-oxoisovalerate dehydrog | yes | no | 0.986 | 0.848 | 0.477 | 1e-106 | |
| P11178 | 455 | 2-oxoisovalerate dehydrog | yes | no | 0.986 | 0.824 | 0.48 | 1e-105 | |
| Q72GU1 | 367 | 2-oxoisovalerate dehydrog | yes | no | 0.857 | 0.888 | 0.415 | 2e-64 | |
| Q5SLR4 | 367 | 2-oxoisovalerate dehydrog | yes | no | 0.857 | 0.888 | 0.415 | 1e-63 |
| >sp|Q54M22|ODBA_DICDI 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 402 bits (1032), Expect = e-111, Method: Compositional matrix adjust.
Identities = 186/370 (50%), Positives = 255/370 (68%), Gaps = 7/370 (1%)
Query: 12 IPCYRVLDDDG---QPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYL 68
IPCY ++D +G +P D +F S+ IKMY M+TL MD+I Y+ QRQGRISFY+
Sbjct: 64 IPCYTIMDQEGVVSKPDQDPNF---SKEEVIKMYTTMLTLNVMDSILYDVQRQGRISFYM 120
Query: 69 TTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMP 128
T+ GEEAI+I SAAA++ D + QYRE GV +WRGF++ + NQC N+ D GKGRQMP
Sbjct: 121 TSFGEEAIHIGSAAALEMSDTIFAQYRETGVFMWRGFTINDIINQCCTNEHDLGKGRQMP 180
Query: 129 IHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNF 188
+H+GS K N T+SS + TQLP AVG++YA K+ + C + YFG+G SEGDFHAA+NF
Sbjct: 181 MHFGSRKINLQTISSPLTTQLPQAVGSSYAQKLAGEKNCTIVYFGEGAASEGDFHAAMNF 240
Query: 189 SAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKG-RAYGVRSIRVDGNDALAIYSAVH 247
+A P IF CRNN WAISTP +Q++ DG +G YG+++IRVDGND A+Y+
Sbjct: 241 AAALSTPTIFFCRNNKWAISTPSKEQYKGDGIAGRGPNGYGMKTIRVDGNDIWAVYNVTK 300
Query: 248 AAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESN 307
AR++A+ E P+LIEA+TYRVGHH+TSDDS++YR V+EI W+ ++P++R R ++
Sbjct: 301 LARKIAVEEQVPVLIEAMTYRVGHHSTSDDSSRYRTVEEINAWKEGKNPISRLRNYMNHK 360
Query: 308 GWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETI 367
GWW+ E E ++ R + +L AEK KP I+++FTDVYD NL EQ+ L E +
Sbjct: 361 GWWSDAQEKETIANARTTVRESLVNAEKQYKPSINEIFTDVYDKPTPNLIEQQKELIEHL 420
Query: 368 KKHPQDYPSN 377
K +P +YP N
Sbjct: 421 KLYPDEYPLN 430
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Dictyostelium discoideum (taxid: 44689) EC: 1EC: .EC: 2EC: .EC: 4EC: .EC: 4 |
| >sp|O45924|ODBA_CAEEL 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=Y39E4A.3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 395 bits (1015), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/365 (50%), Positives = 244/365 (66%), Gaps = 2/365 (0%)
Query: 12 IPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTS 71
+P YRV + G S E ++KMY M L MD I Y++QRQGRISFY+T+
Sbjct: 59 LPIYRVTNAVGDVIDKSQDPNFDEQTSLKMYKTMTQLNIMDRILYDSQRQGRISFYMTSF 118
Query: 72 GEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHY 131
GEE ++ SAAA++ D + QYRE GVLLWRG++M+ F NQC+GN D GKGRQMP+H+
Sbjct: 119 GEEGNHVGSAAALEPQDLIYGQYREAGVLLWRGYTMENFMNQCYGNADDLGKGRQMPMHF 178
Query: 132 GSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-KDACAVTYFGDGGTSEGDFHAALNFSA 190
G+ + N+ T+SS + TQLP AVG+AYA K + + AV YFGDG SEGD HAA NF+A
Sbjct: 179 GTKERNFVTISSPLTTQLPQAVGSAYAFKQQKDNNRIAVVYFGDGAASEGDAHAAFNFAA 238
Query: 191 VTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAR 250
+ P+IF CRNNG+AISTP S+Q+ DG KG AYG+ +IRVDGND LA+Y+A AR
Sbjct: 239 TLKCPIIFFCRNNGYAISTPTSEQYGGDGIAGKGPAYGLHTIRVDGNDLLAVYNATKEAR 298
Query: 251 EMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWW 310
+A+ RP+LIEA+TYR+GHH+TSDDST YR DE++ W P+TRF+K+I GWW
Sbjct: 299 RVAL-TNRPVLIEAMTYRLGHHSTSDDSTAYRSSDEVQTWGDKDHPITRFKKYITERGWW 357
Query: 311 NGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKH 370
N + E E + V+K++L AEK +K DLF DVYD P LR Q L + ++
Sbjct: 358 NEEKEMEWQKEVKKRVLTEFAAAEKRKKAHYHDLFEDVYDELPLRLRRQRDELDAHVAEY 417
Query: 371 PQDYP 375
+ YP
Sbjct: 418 KEHYP 422
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity). Required for the production of the monomethyl branched-chain fatty acids (mmBCFAs) isopentadecanoate (C15iso) and isoheptadecanoate (C17iso). Caenorhabditis elegans (taxid: 6239) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|A5A6H9|ODBA_PANTR 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Pan troglodytes GN=BCKDHA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust.
Identities = 182/375 (48%), Positives = 248/375 (66%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 65 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 124
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE ++ SAAA+ N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 125 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 184
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 185 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 244
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 245 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 304
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W PV+R
Sbjct: 305 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPVSRL 364
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R RK+++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 365 RHYLLSQGWWDEEQEKAWRKQSRKKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 424
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 425 ESLARHLQTYGEHYP 439
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Pan troglodytes (taxid: 9598) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|Q8HXY4|ODBA_MACFA 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Macaca fascicularis GN=BCKDHA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 387 bits (994), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/375 (48%), Positives = 248/375 (66%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 65 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 124
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE ++ SAAA+ N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 125 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 184
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 185 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 244
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 245 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 304
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W P++R
Sbjct: 305 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRL 364
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R RK+++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 365 RHYLLSQGWWDEEQEKAWRKQSRKKVMKAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 424
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 425 ESLARHLQTYGEHYP 439
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Macaca fascicularis (taxid: 9541) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|P12694|ODBA_HUMAN 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Homo sapiens GN=BCKDHA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/375 (48%), Positives = 248/375 (66%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 65 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 124
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE ++ SAAA+ N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 125 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 184
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 185 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 244
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 245 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 304
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W P++R
Sbjct: 305 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRL 364
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R R++++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 365 RHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 424
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 425 ESLARHLQTYGEHYP 439
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|P11960|ODBA_RAT 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial (Fragment) OS=Rattus norvegicus GN=Bckdha PE=1 SV=1 | Back alignment and function description |
|---|
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/375 (48%), Positives = 248/375 (66%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 61 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEEVLKLYRSMTLLNTMDRILYESQR 120
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE ++ SAAA++ D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 121 QGRISFYMTNYGEEGTHVGSAAALERTDLVFGQYREAGVLMYRDYPLELFMAQCYGNVSD 180
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 181 PGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANQIVICYFGEGAASEG 240
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 241 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 300
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W P++R
Sbjct: 301 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRL 360
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R+++ + GWW+ + E R RK+++ A ++AE+ KP S LF+DVY P+ LR Q+
Sbjct: 361 RQYLLNQGWWDEEQEKAWRKQSRKKVMEAFEQAERKLKPNPSLLFSDVYQEMPAQLRRQQ 420
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 421 ESLARHLQTYGEHYP 435
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|P50136|ODBA_MOUSE 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Mus musculus GN=Bckdha PE=1 SV=1 | Back alignment and function description |
|---|
Score = 384 bits (985), Expect = e-106, Method: Compositional matrix adjust.
Identities = 179/375 (47%), Positives = 248/375 (66%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K Y M L TMD I YE+QR
Sbjct: 62 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEEVLKFYRSMTLLNTMDRILYESQR 121
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
+GRISFY+T GEE ++ SAAA++ D V QYRE GVL++R + ++ F +QC+GN D
Sbjct: 122 EGRISFYMTNYGEEGTHVGSAAALERTDLVFGQYREAGVLMYRDYPLELFMSQCYGNVND 181
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 182 PGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRIVICYFGEGAASEG 241
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG++SIRVDGND
Sbjct: 242 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIKSIRVDGNDVF 301
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W P++R
Sbjct: 302 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRL 361
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R+++ + GWW+ + E R RK+++ A ++AE+ KP S LF+DVY P+ LR Q+
Sbjct: 362 RQYLLNQGWWDEEQEKAWRKQSRKKVMEAFEQAERKLKPNPSLLFSDVYQEMPAQLRRQQ 421
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 422 ESLARHLQTYGEHYP 436
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Mus musculus (taxid: 10090) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|P11178|ODBA_BOVIN 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Bos taurus GN=BCKDHA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/375 (48%), Positives = 247/375 (65%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K Y M L TMD I YE+QR
Sbjct: 75 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEKVLKFYKSMTLLNTMDRILYESQR 134
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE ++ SAAA+ + D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 135 QGRISFYMTNYGEEGTHVGSAAALDDTDLVFGQYREAGVLMYRDYPLELFMAQCYGNVSD 194
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 195 LGKGRQMPVHYGCRERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 254
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 255 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGILSIRVDGNDVF 314
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W P++R
Sbjct: 315 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRL 374
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++S GWW+ + E R RK+++ A ++AE+ KP S +F+DVY P+ LR+Q+
Sbjct: 375 RHHLQSRGWWDDEQEKAWRKQSRKKVMEAFEQAERKLKPNPSLIFSDVYQEMPAQLRKQQ 434
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 435 ESLARHLQTYGEHYP 449
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Bos taurus (taxid: 9913) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|Q72GU1|ODBA_THET2 2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1757 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 137/330 (41%), Positives = 196/330 (59%), Gaps = 4/330 (1%)
Query: 40 KMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKND-DFVVPQYREPG 98
++Y DM+ + +D + R G+ SF +G EA +A A AI+ D+V P YR+ G
Sbjct: 40 RLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHG 99
Query: 99 VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYA 158
+ L G ++E Q KAD KGRQMP H GS N+FTV+S IA+ +P A GAA +
Sbjct: 100 LALALGIPLKELFGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAIS 159
Query: 159 LKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSD 218
+K+ R AV FGDG TSEGD++A +NF+AV AP +F+C NN +AIS Q S
Sbjct: 160 MKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFVCENNFYAISVDYRHQTHSP 219
Query: 219 GAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMA-IGEGRPILIEALTYRVGHHTTSDD 277
K A+G+ VDG D LA Y V A E A GEG P L+E YR G H+++DD
Sbjct: 220 TIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEG-PSLVELRVYRYGPHSSADD 278
Query: 278 STKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAE 337
++YRP +E+ +WR +DP+ RFR+++E+ G WN + E ++R +R ++ L+EAE+A
Sbjct: 279 DSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAG 337
Query: 338 KPPISDLFTDVYDVSPSNLREQEHSLRETI 367
P +F DV+ P +L QE L+E +
Sbjct: 338 PVPPEWMFADVFAEKPWHLLRQEALLKEEL 367
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (taxid: 262724) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|Q5SLR4|ODBA_THET8 2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0229 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (621), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 137/330 (41%), Positives = 195/330 (59%), Gaps = 4/330 (1%)
Query: 40 KMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKND-DFVVPQYREPG 98
++Y DM+ + +D + R G+ SF +G EA +A A AI+ D+V P YR+ G
Sbjct: 40 RLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHG 99
Query: 99 VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYA 158
+ L G ++E Q KAD KGRQMP H GS N+FTV+S IA+ +P A GAA +
Sbjct: 100 LALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAIS 159
Query: 159 LKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSD 218
+K+ R AV FGDG TSEGD++A +NF+AV AP +FI NN +AIS Q S
Sbjct: 160 MKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSP 219
Query: 219 GAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMA-IGEGRPILIEALTYRVGHHTTSDD 277
K A+G+ VDG D LA Y V A E A GEG P L+E YR G H+++DD
Sbjct: 220 TIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEG-PSLVELRVYRYGPHSSADD 278
Query: 278 STKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAE 337
++YRP +E+ +WR +DP+ RFR+++E+ G WN + E ++R +R ++ L+EAE+A
Sbjct: 279 DSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAG 337
Query: 338 KPPISDLFTDVYDVSPSNLREQEHSLRETI 367
P +F DV+ P +L QE L+E +
Sbjct: 338 PVPPEWMFEDVFAEKPWHLLRQEALLKEEL 367
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (taxid: 300852) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 380 | ||||||
| 449461865 | 481 | PREDICTED: 2-oxoisovalerate dehydrogenas | 1.0 | 0.790 | 0.765 | 0.0 | |
| 449507480 | 481 | PREDICTED: 2-oxoisovalerate dehydrogenas | 1.0 | 0.790 | 0.763 | 0.0 | |
| 356508967 | 474 | PREDICTED: 2-oxoisovalerate dehydrogenas | 1.0 | 0.801 | 0.773 | 0.0 | |
| 357464693 | 449 | 2-oxoisovalerate dehydrogenase subunit a | 1.0 | 0.846 | 0.763 | 1e-180 | |
| 224083452 | 378 | predicted protein [Populus trichocarpa] | 0.994 | 1.0 | 0.789 | 1e-180 | |
| 297811017 | 472 | hypothetical protein ARALYDRAFT_350155 [ | 1.0 | 0.805 | 0.765 | 1e-179 | |
| 255558474 | 380 | 2-oxoisovalerate dehydrogenase, putative | 0.997 | 0.997 | 0.757 | 1e-179 | |
| 218186540 | 479 | hypothetical protein OsI_37710 [Oryza sa | 1.0 | 0.793 | 0.768 | 1e-179 | |
| 222616745 | 512 | hypothetical protein OsJ_35450 [Oryza sa | 1.0 | 0.742 | 0.765 | 1e-179 | |
| 108862263 | 487 | 2-oxoisovalerate dehydrogenase alpha sub | 1.0 | 0.780 | 0.765 | 1e-179 |
| >gi|449461865|ref|XP_004148662.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 291/380 (76%), Positives = 340/380 (89%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + EERIPC+RVLDD+G+P S+F +VS+ VA+K+Y+DMVTLQTMDTIFYEAQR
Sbjct: 102 LSFIPDREEERIPCFRVLDDNGRPCMYSNFTQVSKEVAMKIYHDMVTLQTMDTIFYEAQR 161
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T+ GEEAIN+ASAAA+ DD +VPQYRE GVL+WRGF+++EFA+QCFGNK D
Sbjct: 162 QGRISFYVTSLGEEAINVASAAALSLDDLIVPQYREAGVLIWRGFTLKEFASQCFGNKYD 221
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
Y KGRQMP+HYGS +HNYFTV+STIA+Q+PHAVGAAY++KMD+KDACAVTYFGDGGTSEG
Sbjct: 222 YCKGRQMPVHYGSKRHNYFTVASTIASQIPHAVGAAYSMKMDKKDACAVTYFGDGGTSEG 281
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
DFHAALNF+AV EAPVIFICRNNGWAISTPISDQFRSDG VVKG+AYGVRSIRVDGNDAL
Sbjct: 282 DFHAALNFAAVLEAPVIFICRNNGWAISTPISDQFRSDGVVVKGQAYGVRSIRVDGNDAL 341
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+AV AAREMAI E RPILIEALTYR GHHTTSDDST+YRP E+EWWR DPV+RF
Sbjct: 342 AVYNAVRAAREMAIQEQRPILIEALTYRAGHHTTSDDSTRYRPAQEMEWWRVAMDPVSRF 401
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
RKWIESNGWW+ + E+ELRS +RKQ+L +Q AE++EKPP++D FTDVYDV PSNL+EQE
Sbjct: 402 RKWIESNGWWSNEAEAELRSRLRKQLLEEIQLAERSEKPPVADAFTDVYDVPPSNLQEQE 461
Query: 361 HSLRETIKKHPQDYPSNVPI 380
LR+TIK HPQDYPSN P+
Sbjct: 462 KWLRKTIKTHPQDYPSNFPL 481
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449507480|ref|XP_004163044.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 290/380 (76%), Positives = 341/380 (89%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + EERIPC+RVLDD+G+P ++F +VS+ VA+K+Y+DMVTLQTMDTIFYEAQR
Sbjct: 102 LSFIPDREEERIPCFRVLDDNGRPCMYNNFTQVSKEVAMKIYHDMVTLQTMDTIFYEAQR 161
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T+ GEEAIN+ASAAA+ DD +VPQYRE GVL+WRGF+++EFA+QCFGNK D
Sbjct: 162 QGRISFYVTSLGEEAINVASAAALSLDDLIVPQYREAGVLIWRGFTLKEFASQCFGNKYD 221
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
Y KGRQMP+HYGS +HNYFTV+STIA+Q+PHAVGAAY++KMD+KDACAVTYFGDGGTSEG
Sbjct: 222 YCKGRQMPVHYGSKRHNYFTVASTIASQIPHAVGAAYSMKMDKKDACAVTYFGDGGTSEG 281
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
DFHAALNF+AV EAPVIFICRNNGWAISTPISDQFRSDG VVKG+AYGVRSIRVDGNDAL
Sbjct: 282 DFHAALNFAAVLEAPVIFICRNNGWAISTPISDQFRSDGVVVKGQAYGVRSIRVDGNDAL 341
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+AV AAREMAI E RPILIEALTYR GHHTTSDDST+YRP +E+EWWR DPV+RF
Sbjct: 342 AVYNAVRAAREMAIQEQRPILIEALTYRAGHHTTSDDSTRYRPAEEMEWWRVAMDPVSRF 401
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
RKWIESNGWW+ + E+ELRS +RKQ+L +Q AE++EKPP++D FTDVYDV PSNL+EQE
Sbjct: 402 RKWIESNGWWSNEAEAELRSRLRKQLLEEIQLAERSEKPPVADAFTDVYDVPPSNLQEQE 461
Query: 361 HSLRETIKKHPQDYPSNVPI 380
LR+TIK HPQDYPSN P+
Sbjct: 462 KWLRKTIKTHPQDYPSNFPL 481
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508967|ref|XP_003523224.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 294/380 (77%), Positives = 336/380 (88%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
MRFISES +ERIPCYRVLDD+GQP +FV+VS+ VA+KMY DMVTL++MDTIFYEAQR
Sbjct: 95 MRFISESPKERIPCYRVLDDNGQPILGHNFVQVSKEVAVKMYTDMVTLRSMDTIFYEAQR 154
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEEAIN+ASAAA+ DD V PQYRE GVLLWRGF++QEFANQ F N D
Sbjct: 155 QGRISFYVTAIGEEAINVASAAALAMDDVVFPQYREAGVLLWRGFTLQEFANQLFSNIYD 214
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
YGKGRQMP HYGS KHNYFTV+STIATQ+ HAVGAAY+LKMD+KDACAVTYFGDGG+SEG
Sbjct: 215 YGKGRQMPAHYGSKKHNYFTVASTIATQISHAVGAAYSLKMDKKDACAVTYFGDGGSSEG 274
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
DFHAALNF+AV EAPVIFICRNNGWAISTPISDQFRSDG VVKG+AYGVRSIRVDGNDAL
Sbjct: 275 DFHAALNFAAVLEAPVIFICRNNGWAISTPISDQFRSDGVVVKGQAYGVRSIRVDGNDAL 334
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
AIYSA+ AAR+MAI E RPILIEALTYRVGHHTTSDDSTKYRP +EIEWWR +DPV RF
Sbjct: 335 AIYSAIQAARQMAITEERPILIEALTYRVGHHTTSDDSTKYRPANEIEWWRVARDPVVRF 394
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
RKWIE +GWWN ESEL +++R+Q+LH +QEAE EKPP++D F+DVYDV+PSNLREQE
Sbjct: 395 RKWIEKHGWWNDMAESELINNLRQQLLHTIQEAEGVEKPPLADSFSDVYDVAPSNLREQE 454
Query: 361 HSLRETIKKHPQDYPSNVPI 380
L+E ++K PQ+YP+N+ +
Sbjct: 455 QWLKEIVRKQPQEYPTNISV 474
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357464693|ref|XP_003602628.1| 2-oxoisovalerate dehydrogenase subunit alpha [Medicago truncatula] gi|355491676|gb|AES72879.1| 2-oxoisovalerate dehydrogenase subunit alpha [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust.
Identities = 290/380 (76%), Positives = 333/380 (87%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
M F+SES + R+PCYRVLDD+G+P + FV+VSE A+KMYN+MV LQTMDTIFYEAQR
Sbjct: 70 MTFLSESQQHRVPCYRVLDDNGEPIFGTDFVQVSEDFAVKMYNNMVALQTMDTIFYEAQR 129
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+TT+GEEAINIASAAA+ +D + PQYRE GVLLWRGF++QEFANQCF NK D
Sbjct: 130 QGRISFYVTTNGEEAINIASAAALSMNDVIFPQYREQGVLLWRGFTLQEFANQCFSNKFD 189
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP HYGSNKHNY V+ST+ATQ+PHAVGAAY+LKMD+KDACAVTYFGDGG+SEG
Sbjct: 190 NGKGRQMPAHYGSNKHNYMNVASTVATQIPHAVGAAYSLKMDKKDACAVTYFGDGGSSEG 249
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
DFHA LNF+AV EAPVIFICRNNGWAISTP SDQFRSDG VVKG+AYGVRSIRVDGNDAL
Sbjct: 250 DFHAGLNFAAVMEAPVIFICRNNGWAISTPTSDQFRSDGIVVKGQAYGVRSIRVDGNDAL 309
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
AIYSAV AAR+MA+ E RPILIEALTYRVGHH+TSDDSTKYRP +EIEWWR ++DPV RF
Sbjct: 310 AIYSAVQAARQMAVSEERPILIEALTYRVGHHSTSDDSTKYRPANEIEWWRLSRDPVARF 369
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
RKWIE NGWWN ESELR+S+R+Q+L +Q AE EKPP++D+F+DVYDV PSNL EQE
Sbjct: 370 RKWIERNGWWNDMAESELRNSLRQQLLQTIQVAESVEKPPLADMFSDVYDVPPSNLHEQE 429
Query: 361 HSLRETIKKHPQDYPSNVPI 380
L+ET+KKHP YP+N+ I
Sbjct: 430 KRLKETVKKHPHVYPTNISI 449
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224083452|ref|XP_002307033.1| predicted protein [Populus trichocarpa] gi|222856482|gb|EEE94029.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 300/380 (78%), Positives = 335/380 (88%), Gaps = 2/380 (0%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
MRF+SES +ERIPCYRVLDDDGQ S + VS+ +A+KMY+DM TLQ MDTIFYEAQR
Sbjct: 1 MRFLSESPKERIPCYRVLDDDGQLIQGS--IDVSKEIAVKMYSDMATLQIMDTIFYEAQR 58
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFYLTT GEEAINIASAAA+ DDFVVPQYREPGVLLWRGF++Q+FANQCF NK D
Sbjct: 59 QGRISFYLTTIGEEAINIASAAALTIDDFVVPQYREPGVLLWRGFTLQQFANQCFSNKDD 118
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
+GRQMPIHYGS K NYFTV+STIA+QLPHAVG AY+LKMD KDACAVTYFGDGG+SEG
Sbjct: 119 DCRGRQMPIHYGSKKLNYFTVASTIASQLPHAVGVAYSLKMDGKDACAVTYFGDGGSSEG 178
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
DFHAALNF+AVTEAPV+FICRNNGWAISTP SDQFRSDG VV+G AYGVRSIRVDGND L
Sbjct: 179 DFHAALNFAAVTEAPVLFICRNNGWAISTPTSDQFRSDGIVVRGEAYGVRSIRVDGNDTL 238
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+YS V AAREMAI E RPIL+EALTYRVGHH+TSDDSTKYRPVDEIE WR+ +DP+ RF
Sbjct: 239 ALYSTVRAAREMAIREQRPILVEALTYRVGHHSTSDDSTKYRPVDEIELWRSARDPIARF 298
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
RKWIESNGWW+G+ ESELRS+VRKQ+L A+Q AE+ EKPP+ D+FTDVYDV PSNL EQE
Sbjct: 299 RKWIESNGWWSGEAESELRSNVRKQLLDAIQVAERTEKPPLVDIFTDVYDVPPSNLSEQE 358
Query: 361 HSLRETIKKHPQDYPSNVPI 380
LRETIK HPQDYPS+ +
Sbjct: 359 KWLRETIKIHPQDYPSDFTL 378
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811017|ref|XP_002873392.1| hypothetical protein ARALYDRAFT_350155 [Arabidopsis lyrata subsp. lyrata] gi|297319229|gb|EFH49651.1| hypothetical protein ARALYDRAFT_350155 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust.
Identities = 291/380 (76%), Positives = 335/380 (88%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+RFISES ER+PCYRVLDD+GQ +S FV+VSE VA+K+Y+DMVTLQ MD IFYEAQR
Sbjct: 93 IRFISESDSERVPCYRVLDDNGQLITNSQFVQVSEEVAVKIYSDMVTLQIMDNIFYEAQR 152
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGR+SFY T GEEAINIASAAA+ D + PQYREPGVLLWRGF++QEFANQCFGNK+D
Sbjct: 153 QGRLSFYATAIGEEAINIASAAALTPQDVIFPQYREPGVLLWRGFTLQEFANQCFGNKSD 212
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
YGKGRQMP+HYGSNK NYFTVS+TIATQLP+AVGAAY+LKMDRKDACAVTYFGDGGTSEG
Sbjct: 213 YGKGRQMPVHYGSNKLNYFTVSATIATQLPNAVGAAYSLKMDRKDACAVTYFGDGGTSEG 272
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
DFHAALNF+AV EAPVIFICRNNGWAISTP SDQFRSDG VVKGRAYG+RSIRVDGNDAL
Sbjct: 273 DFHAALNFAAVMEAPVIFICRNNGWAISTPTSDQFRSDGVVVKGRAYGIRSIRVDGNDAL 332
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+YSAVH AR MAI E RPILIEALTYRVGHH+TSDDST+YR DEIEWW ++P++RF
Sbjct: 333 AMYSAVHTARGMAISEQRPILIEALTYRVGHHSTSDDSTRYRSADEIEWWNKARNPLSRF 392
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R WIESNGWW+ + ES+LRS ++K++L AL+ AEK EKP + ++F+DVYDV PSNL EQE
Sbjct: 393 RTWIESNGWWSDEAESDLRSRIKKEMLEALRVAEKTEKPNLKNMFSDVYDVPPSNLMEQE 452
Query: 361 HSLRETIKKHPQDYPSNVPI 380
+R+TI HPQDYP++VP+
Sbjct: 453 LLVRQTIDSHPQDYPTDVPL 472
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558474|ref|XP_002520262.1| 2-oxoisovalerate dehydrogenase, putative [Ricinus communis] gi|223540481|gb|EEF42048.1| 2-oxoisovalerate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 287/379 (75%), Positives = 335/379 (88%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
M+FIS SS++R+PCYR+LD++G +S F +VS+ +A+KMYN+MVTLQ MDTIFYEAQR
Sbjct: 1 MKFISGSSQKRVPCYRILDENGDLIENSDFDEVSKEIAVKMYNEMVTLQMMDTIFYEAQR 60
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T+ GEE+INIASAAA+ DD V+PQYREPGVLLWRGF++QEFANQCFGNKAD
Sbjct: 61 QGRISFYVTSIGEESINIASAAALTKDDVVLPQYREPGVLLWRGFTLQEFANQCFGNKAD 120
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
YG+GRQMPIHYGSNKHNYFTVSS IATQLP AVG AY+LKM++KDAC VTY GDGGTSEG
Sbjct: 121 YGRGRQMPIHYGSNKHNYFTVSSPIATQLPQAVGVAYSLKMEKKDACVVTYIGDGGTSEG 180
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
DFHAALNF+AVTEAPVIFICRNNGWAIST IS+QFRSDG VVKG+AYG++SIRVDGNDAL
Sbjct: 181 DFHAALNFAAVTEAPVIFICRNNGWAISTHISEQFRSDGIVVKGKAYGIQSIRVDGNDAL 240
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y + AAR++A+ E RP+L+EALTYRVGHH+TSDDSTKYRP DEIE+W+ ++PV RF
Sbjct: 241 AVYRTIRAARQIAVSEQRPVLVEALTYRVGHHSTSDDSTKYRPADEIEYWKMARNPVNRF 300
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
RKW+E NGWW+ ESELRSSVRKQ+L A+Q AEK EKPP+ D+FTDVYD+ SNLREQE
Sbjct: 301 RKWVERNGWWSDKEESELRSSVRKQLLQAIQVAEKTEKPPLGDMFTDVYDIPSSNLREQE 360
Query: 361 HSLRETIKKHPQDYPSNVP 379
LRETI HPQDYPS VP
Sbjct: 361 KQLRETISAHPQDYPSVVP 379
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218186540|gb|EEC68967.1| hypothetical protein OsI_37710 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 292/380 (76%), Positives = 339/380 (89%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
M F+ ES ERI CYRVLDDDG+ S F +VS+ +A+KMY++MVTLQ MDTIF+EAQR
Sbjct: 100 MNFLPESQRERINCYRVLDDDGRTISGSRFQEVSKELALKMYSEMVTLQVMDTIFFEAQR 159
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFYLT+ GEEAINIASAAA+ DD V+PQYREPGVLLWRGF++QEFANQCFGNK D
Sbjct: 160 QGRISFYLTSHGEEAINIASAAALTIDDIVLPQYREPGVLLWRGFTLQEFANQCFGNKLD 219
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
YGKGRQMPIHYGSN+ NYFTVSS IATQLPHAVGAAY+LKMD+KDACA+TYFGDGGTSEG
Sbjct: 220 YGKGRQMPIHYGSNRLNYFTVSSPIATQLPHAVGAAYSLKMDKKDACAITYFGDGGTSEG 279
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
DFHAALNF+AV EAPVIF CRNNGWAISTP S+QFRSDGAV++G+AYG+RSIRVDGNDAL
Sbjct: 280 DFHAALNFAAVMEAPVIFFCRNNGWAISTPTSEQFRSDGAVIRGQAYGMRSIRVDGNDAL 339
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+YSAVH AREMAI EGRPIL+EALTYRVGHH+TSDDSTKYRPVDEIE WRT +DP++R+
Sbjct: 340 AVYSAVHTAREMAIKEGRPILVEALTYRVGHHSTSDDSTKYRPVDEIEHWRTARDPISRY 399
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
RKW++ NGWW + ESELR++VR+++L A+Q AE+ KPP+++LFTDVYD PSNLREQE
Sbjct: 400 RKWVQGNGWWCDEDESELRNNVRQELLKAIQVAERMPKPPLAELFTDVYDEVPSNLREQE 459
Query: 361 HSLRETIKKHPQDYPSNVPI 380
LR+TIKKHP DYP++V I
Sbjct: 460 RLLRDTIKKHPADYPADVHI 479
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222616745|gb|EEE52877.1| hypothetical protein OsJ_35450 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust.
Identities = 291/380 (76%), Positives = 338/380 (88%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
M F+ ES +RI CYRVLDDDG+ S F +VS+ +A+KMYN+M TLQ MDTIF+EAQR
Sbjct: 133 MNFLPESQRDRINCYRVLDDDGRTISGSRFQEVSKELALKMYNEMATLQVMDTIFFEAQR 192
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFYLT+ GEEAINIASAAA+ DD V+PQYREPGVLLWRGF++QEFANQCFGNK D
Sbjct: 193 QGRISFYLTSHGEEAINIASAAALTIDDIVLPQYREPGVLLWRGFTLQEFANQCFGNKLD 252
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
YGKGRQMPIHYGSN+ NYFTVSS IATQLPHAVGAAY+LKMD+KDACA+TYFGDGGTSEG
Sbjct: 253 YGKGRQMPIHYGSNRLNYFTVSSPIATQLPHAVGAAYSLKMDKKDACAITYFGDGGTSEG 312
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
DFHAALNF+AV EAPVIF CRNNGWAISTP S+QFRSDGAV++G+AYG+RSIRVDGNDAL
Sbjct: 313 DFHAALNFAAVMEAPVIFFCRNNGWAISTPTSEQFRSDGAVIRGQAYGMRSIRVDGNDAL 372
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+YSAVH AREMAI EGRPIL+EALTYRVGHH+TSDDSTKYRPVDEIE WRT +DP++R+
Sbjct: 373 AVYSAVHTAREMAIKEGRPILVEALTYRVGHHSTSDDSTKYRPVDEIEHWRTARDPISRY 432
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
RKW++ NGWW + ESELR++VR+++L A+Q AE+ KPP+++LFTDVYD PSNLREQE
Sbjct: 433 RKWVQGNGWWCDEDESELRNNVRQELLKAIQVAERMPKPPLAELFTDVYDEVPSNLREQE 492
Query: 361 HSLRETIKKHPQDYPSNVPI 380
LR+TIKKHP DYP++V I
Sbjct: 493 RLLRDTIKKHPADYPADVHI 512
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|108862263|gb|ABA95968.2| 2-oxoisovalerate dehydrogenase alpha subunit, mitochondrial precursor, putative, expressed [Oryza sativa Japonica Group] gi|108862264|gb|ABA95969.2| 2-oxoisovalerate dehydrogenase alpha subunit, mitochondrial precursor, putative, expressed [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust.
Identities = 291/380 (76%), Positives = 338/380 (88%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
M F+ ES +RI CYRVLDDDG+ S F +VS+ +A+KMYN+M TLQ MDTIF+EAQR
Sbjct: 108 MNFLPESQRDRINCYRVLDDDGRTISGSRFQEVSKELALKMYNEMATLQVMDTIFFEAQR 167
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFYLT+ GEEAINIASAAA+ DD V+PQYREPGVLLWRGF++QEFANQCFGNK D
Sbjct: 168 QGRISFYLTSHGEEAINIASAAALTIDDIVLPQYREPGVLLWRGFTLQEFANQCFGNKLD 227
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
YGKGRQMPIHYGSN+ NYFTVSS IATQLPHAVGAAY+LKMD+KDACA+TYFGDGGTSEG
Sbjct: 228 YGKGRQMPIHYGSNRLNYFTVSSPIATQLPHAVGAAYSLKMDKKDACAITYFGDGGTSEG 287
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
DFHAALNF+AV EAPVIF CRNNGWAISTP S+QFRSDGAV++G+AYG+RSIRVDGNDAL
Sbjct: 288 DFHAALNFAAVMEAPVIFFCRNNGWAISTPTSEQFRSDGAVIRGQAYGMRSIRVDGNDAL 347
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+YSAVH AREMAI EGRPIL+EALTYRVGHH+TSDDSTKYRPVDEIE WRT +DP++R+
Sbjct: 348 AVYSAVHTAREMAIKEGRPILVEALTYRVGHHSTSDDSTKYRPVDEIEHWRTARDPISRY 407
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
RKW++ NGWW + ESELR++VR+++L A+Q AE+ KPP+++LFTDVYD PSNLREQE
Sbjct: 408 RKWVQGNGWWCDEDESELRNNVRQELLKAIQVAERMPKPPLAELFTDVYDEVPSNLREQE 467
Query: 361 HSLRETIKKHPQDYPSNVPI 380
LR+TIKKHP DYP++V I
Sbjct: 468 RLLRDTIKKHPADYPADVHI 487
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 380 | ||||||
| TAIR|locus:2184702 | 472 | AT5G09300 "AT5G09300" [Arabido | 1.0 | 0.805 | 0.736 | 1.6e-157 | |
| TAIR|locus:2027072 | 472 | AT1G21400 "AT1G21400" [Arabido | 0.986 | 0.794 | 0.706 | 1.2e-150 | |
| WB|WBGene00012713 | 432 | Y39E4A.3 [Caenorhabditis elega | 0.984 | 0.865 | 0.484 | 3.5e-98 | |
| DICTYBASE|DDB_G0286335 | 441 | bkdA "branched-chain alpha-ket | 0.955 | 0.823 | 0.489 | 9.4e-98 | |
| UNIPROTKB|F1RHA0 | 411 | LOC100738911 "Uncharacterized | 0.986 | 0.912 | 0.472 | 1.2e-97 | |
| UNIPROTKB|I3LNR4 | 447 | LOC100738911 "Uncharacterized | 0.986 | 0.838 | 0.472 | 1.2e-97 | |
| UNIPROTKB|E2RPW4 | 530 | B3GNT8 "Uncharacterized protei | 0.986 | 0.707 | 0.469 | 1.5e-97 | |
| UNIPROTKB|F1PI86 | 480 | B3GNT8 "Uncharacterized protei | 0.986 | 0.781 | 0.469 | 1.5e-97 | |
| UNIPROTKB|F5H5P2 | 479 | BCKDHA "Uncharacterized protei | 0.986 | 0.782 | 0.469 | 2.5e-97 | |
| UNIPROTKB|P12694 | 445 | BCKDHA "2-oxoisovalerate dehyd | 0.986 | 0.842 | 0.469 | 2.5e-97 |
| TAIR|locus:2184702 AT5G09300 "AT5G09300" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1535 (545.4 bits), Expect = 1.6e-157, P = 1.6e-157
Identities = 280/380 (73%), Positives = 325/380 (85%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
++FISES +ER+PCYRVLDD+GQ +S FV+VSE VA+K+Y+DMVTLQ MD IFYEAQR
Sbjct: 93 IQFISESDKERVPCYRVLDDNGQLITNSQFVQVSEEVAVKIYSDMVTLQIMDNIFYEAQR 152
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGR+SFY T GEE D + PQYREPGVLLWRGF++QEFANQCFGNK+D
Sbjct: 153 QGRLSFYATAIGEEAINIASAAALTPQDVIFPQYREPGVLLWRGFTLQEFANQCFGNKSD 212
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
YGKGRQMP+HYGSNK NYFTVS+TIATQLP+AVGAAY+LKMD+KDACAVTYFGDGGTSEG
Sbjct: 213 YGKGRQMPVHYGSNKLNYFTVSATIATQLPNAVGAAYSLKMDKKDACAVTYFGDGGTSEG 272
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
DFHAALN +AV EAPV+FICRNNGWAISTP SDQFRSDG VVKGRAYG+RSIRVDGNDAL
Sbjct: 273 DFHAALNIAAVMEAPVLFICRNNGWAISTPTSDQFRSDGVVVKGRAYGIRSIRVDGNDAL 332
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+YSAVH AREMAI E RPILIEALTYRVGHH+TSDDST+YR EIEWW ++P++RF
Sbjct: 333 AMYSAVHTAREMAIREQRPILIEALTYRVGHHSTSDDSTRYRSAGEIEWWNKARNPLSRF 392
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R WIESNGWW+ ES+LRS ++K++L AL+ AEK EKP + ++F+DVYDV PSNLREQE
Sbjct: 393 RTWIESNGWWSDKTESDLRSRIKKEMLEALRVAEKTEKPNLQNMFSDVYDVPPSNLREQE 452
Query: 361 HSLRETIKKHPQDYPSNVPI 380
+R+TI HPQDYPS+VP+
Sbjct: 453 LLVRQTINSHPQDYPSDVPL 472
|
|
| TAIR|locus:2027072 AT1G21400 "AT1G21400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1470 (522.5 bits), Expect = 1.2e-150, P = 1.2e-150
Identities = 265/375 (70%), Positives = 312/375 (83%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
M+FI ESS RIPCYRVLD+DG+ PDS F+ VSE +A++MY M TLQ MD IFYEAQR
Sbjct: 93 MKFIPESSSRRIPCYRVLDEDGRIIPDSDFIPVSEKLAVRMYEQMATLQVMDHIFYEAQR 152
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFYLT+ GEE DD V+PQYREPGVLLWRGF+++EFANQCFGNKAD
Sbjct: 153 QGRISFYLTSVGEEAINIASAAALSPDDVVLPQYREPGVLLWRGFTLEEFANQCFGNKAD 212
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
YGKGRQMPIHYGSN+ NYFT+SS IATQLP A G Y+LKMD+K+AC VT+ GDGGTSEG
Sbjct: 213 YGKGRQMPIHYGSNRLNYFTISSPIATQLPQAAGVGYSLKMDKKNACTVTFIGDGGTSEG 272
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
DFHA LNF+AV EAPV+FICRNNGWAIST IS+QFRSDG VVKG+AYG+RSIRVDGNDAL
Sbjct: 273 DFHAGLNFAAVMEAPVVFICRNNGWAISTHISEQFRSDGIVVKGQAYGIRSIRVDGNDAL 332
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+YSAV +AREMA+ E RP+LIE +TYRVGHH+TSDDSTKYR DEI++W+ +++PV RF
Sbjct: 333 AVYSAVRSAREMAVTEQRPVLIEMMTYRVGHHSTSDDSTKYRAADEIQYWKMSRNPVNRF 392
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
RKW+E NGWW+ + ES+LRS+ RKQ+L A+Q AEK EK P+++LF DVYDV P NL EQE
Sbjct: 393 RKWVEDNGWWSEEDESKLRSNARKQLLQAIQAAEKWEKQPLTELFNDVYDVKPKNLEEQE 452
Query: 361 HSLRETIKKHPQDYP 375
L+E +KK PQDYP
Sbjct: 453 LGLKELVKKQPQDYP 467
|
|
| WB|WBGene00012713 Y39E4A.3 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
Identities = 182/376 (48%), Positives = 240/376 (63%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ ++ +P YRV + G S E ++KMY M L MD I Y++QR
Sbjct: 49 LEIVNADDTPALPIYRVTNAVGDVIDKSQDPNFDEQTSLKMYKTMTQLNIMDRILYDSQR 108
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T+ GEE + D + QYRE GVLLWRG++M+ F NQC+GN D
Sbjct: 109 QGRISFYMTSFGEEGNHVGSAAALEPQDLIYGQYREAGVLLWRGYTMENFMNQCYGNADD 168
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-KDACAVTYFGDGGTSE 179
GKGRQMP+H+G+ + N+ T+SS + TQLP AVG+AYA K + + AV YFGDG SE
Sbjct: 169 LGKGRQMPMHFGTKERNFVTISSPLTTQLPQAVGSAYAFKQQKDNNRIAVVYFGDGAASE 228
Query: 180 GDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA 239
GD HAA NF+A + P+IF CRNNG+AISTP S+Q+ DG KG AYG+ +IRVDGND
Sbjct: 229 GDAHAAFNFAATLKCPIIFFCRNNGYAISTPTSEQYGGDGIAGKGPAYGLHTIRVDGNDL 288
Query: 240 LAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTR 299
LA+Y+A AR +A+ RP+LIEA+TYR+GHH+TSDDST YR DE++ W P+TR
Sbjct: 289 LAVYNATKEARRVAL-TNRPVLIEAMTYRLGHHSTSDDSTAYRSSDEVQTWGDKDHPITR 347
Query: 300 FRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQ 359
F+K+I GWWN + E E + V+K++L AEK +K DLF DVYD P LR Q
Sbjct: 348 FKKYITERGWWNEEKEMEWQKEVKKRVLTEFAAAEKRKKAHYHDLFEDVYDELPLRLRRQ 407
Query: 360 EHSLRETIKKHPQDYP 375
L + ++ + YP
Sbjct: 408 RDELDAHVAEYKEHYP 423
|
|
| DICTYBASE|DDB_G0286335 bkdA "branched-chain alpha-keto acid dehydrogenase E1 alpha chain" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
Identities = 181/370 (48%), Positives = 247/370 (66%)
Query: 12 IPCYRVLDDDG---QPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYL 68
IPCY ++D +G +P D +F K E V IKMY M+TL MD+I Y+ QRQGRISFY+
Sbjct: 64 IPCYTIMDQEGVVSKPDQDPNFSK--EEV-IKMYTTMLTLNVMDSILYDVQRQGRISFYM 120
Query: 69 TTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMP 128
T+ GEE + D + QYRE GV +WRGF++ + NQC N+ D GKGRQMP
Sbjct: 121 TSFGEEAIHIGSAAALEMSDTIFAQYRETGVFMWRGFTINDIINQCCTNEHDLGKGRQMP 180
Query: 129 IHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNF 188
+H+GS K N T+SS + TQLP AVG++YA K+ + C + YFG+G SEGDFHAA+NF
Sbjct: 181 MHFGSRKINLQTISSPLTTQLPQAVGSSYAQKLAGEKNCTIVYFGEGAASEGDFHAAMNF 240
Query: 189 SAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKG-RAYGVRSIRVDGNDALAIYSAVH 247
+A P IF CRNN WAISTP +Q++ DG +G YG+++IRVDGND A+Y+
Sbjct: 241 AAALSTPTIFFCRNNKWAISTPSKEQYKGDGIAGRGPNGYGMKTIRVDGNDIWAVYNVTK 300
Query: 248 AAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESN 307
AR++A+ E P+LIEA+TYRVGHH+TSDDS++YR V+EI W+ ++P++R R ++
Sbjct: 301 LARKIAVEEQVPVLIEAMTYRVGHHSTSDDSSRYRTVEEINAWKEGKNPISRLRNYMNHK 360
Query: 308 GWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETI 367
GWW+ E E ++ R + +L AEK KP I+++FTDVYD NL EQ+ L E +
Sbjct: 361 GWWSDAQEKETIANARTTVRESLVNAEKQYKPSINEIFTDVYDKPTPNLIEQQKELIEHL 420
Query: 368 KKHPQDYPSN 377
K +P +YP N
Sbjct: 421 KLYPDEYPLN 430
|
|
| UNIPROTKB|F1RHA0 LOC100738911 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
Identities = 177/375 (47%), Positives = 240/375 (64%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K Y M L TMD I YE+QR
Sbjct: 31 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEKVLKFYKSMTLLNTMDRILYESQR 90
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+ N +D
Sbjct: 91 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYSNVSD 150
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 151 LGKGRQMPVHYGCRERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 210
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 211 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGILSIRVDGNDVF 270
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W P++R
Sbjct: 271 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVSYWDKQDHPISRL 330
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R +++S GWW+ + E R RK+++ A Q+AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 331 RHYLQSRGWWDDEQEKAWRKQSRKKVMEAFQQAERKLKPNPNLLFSDVYQEMPAQLRKQQ 390
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 391 ESLARHLQTYGEHYP 405
|
|
| UNIPROTKB|I3LNR4 LOC100738911 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
Identities = 177/375 (47%), Positives = 240/375 (64%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K Y M L TMD I YE+QR
Sbjct: 67 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEKVLKFYKSMTLLNTMDRILYESQR 126
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+ N +D
Sbjct: 127 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYSNVSD 186
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 187 LGKGRQMPVHYGCRERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 246
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 247 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGILSIRVDGNDVF 306
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W P++R
Sbjct: 307 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVSYWDKQDHPISRL 366
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R +++S GWW+ + E R RK+++ A Q+AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 367 RHYLQSRGWWDDEQEKAWRKQSRKKVMEAFQQAERKLKPNPNLLFSDVYQEMPAQLRKQQ 426
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 427 ESLARHLQTYGEHYP 441
|
|
| UNIPROTKB|E2RPW4 B3GNT8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
Identities = 176/375 (46%), Positives = 240/375 (64%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K Y M L TMD I YE+QR
Sbjct: 150 LEFIQPNVISGIPVYRVMDRQGQIINPSEDPHLPQEKVLKFYKSMTLLNTMDRILYESQR 209
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 210 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNVSD 269
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 270 PGKGRQMPVHYGCKDRHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 329
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 330 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 389
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W P++R
Sbjct: 390 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRL 449
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R +++S GWW+ + E R RK+++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 450 RHYLQSRGWWDDEQEKAWRKQSRKKVMEAFEQAERKPKPNPNLLFSDVYQEMPTQLRKQQ 509
Query: 361 HSLRETIKKHPQDYP 375
+L ++ + + YP
Sbjct: 510 EALARHLQTYGEHYP 524
|
|
| UNIPROTKB|F1PI86 B3GNT8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
Identities = 176/375 (46%), Positives = 240/375 (64%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K Y M L TMD I YE+QR
Sbjct: 100 LEFIQPNVISGIPVYRVMDRQGQIINPSEDPHLPQEKVLKFYKSMTLLNTMDRILYESQR 159
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 160 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNVSD 219
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 220 PGKGRQMPVHYGCKDRHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 279
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 280 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 339
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W P++R
Sbjct: 340 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRL 399
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R +++S GWW+ + E R RK+++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 400 RHYLQSRGWWDDEQEKAWRKQSRKKVMEAFEQAERKPKPNPNLLFSDVYQEMPTQLRKQQ 459
Query: 361 HSLRETIKKHPQDYP 375
+L ++ + + YP
Sbjct: 460 EALARHLQTYGEHYP 474
|
|
| UNIPROTKB|F5H5P2 BCKDHA "Uncharacterized protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 176/375 (46%), Positives = 241/375 (64%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 99 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 158
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 159 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 218
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 219 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 278
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 279 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 338
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W P++R
Sbjct: 339 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRL 398
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R R++++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 399 RHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 458
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 459 ESLARHLQTYGEHYP 473
|
|
| UNIPROTKB|P12694 BCKDHA "2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 176/375 (46%), Positives = 241/375 (64%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 65 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 124
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 125 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 184
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 185 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 244
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 245 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 304
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W P++R
Sbjct: 305 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRL 364
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R R++++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 365 RHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 424
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 425 ESLARHLQTYGEHYP 439
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| O45924 | ODBA_CAEEL | 1, ., 2, ., 4, ., 4 | 0.5095 | 0.9552 | 0.8422 | yes | no |
| P11960 | ODBA_RAT | 1, ., 2, ., 4, ., 4 | 0.48 | 0.9868 | 0.8503 | yes | no |
| Q5HQ76 | ODPA_STAEQ | 1, ., 2, ., 4, ., 1 | 0.3626 | 0.9236 | 0.9486 | yes | no |
| Q5SLR4 | ODBA_THET8 | 1, ., 2, ., 4, ., 4 | 0.4151 | 0.8578 | 0.8882 | yes | no |
| Q72GU1 | ODBA_THET2 | 1, ., 2, ., 4, ., 4 | 0.4151 | 0.8578 | 0.8882 | yes | no |
| Q54M22 | ODBA_DICDI | 1, ., 2, ., 4, ., 4 | 0.5027 | 0.9552 | 0.8231 | yes | no |
| P35485 | ODPA_ACHLA | 1, ., 2, ., 4, ., 1 | 0.3314 | 0.8763 | 0.9652 | yes | no |
| P60090 | ODPA_STAAW | 1, ., 2, ., 4, ., 1 | 0.3681 | 0.9236 | 0.9486 | yes | no |
| Q6GAC1 | ODPA_STAAS | 1, ., 2, ., 4, ., 1 | 0.3681 | 0.9236 | 0.9486 | yes | no |
| P12694 | ODBA_HUMAN | 1, ., 2, ., 4, ., 4 | 0.48 | 0.9868 | 0.8426 | yes | no |
| Q5HGZ1 | ODPA_STAAC | 1, ., 2, ., 4, ., 1 | 0.3681 | 0.9236 | 0.9486 | yes | no |
| O06161 | BKDA_MYCTU | 1, ., 2, ., 4, ., 4 | 0.3547 | 0.8973 | 0.9291 | yes | no |
| P11178 | ODBA_BOVIN | 1, ., 2, ., 4, ., 4 | 0.48 | 0.9868 | 0.8241 | yes | no |
| A5A6H9 | ODBA_PANTR | 1, ., 2, ., 4, ., 4 | 0.4853 | 0.9868 | 0.8426 | yes | no |
| Q9I1M2 | ODBA_PSEAE | 1, ., 2, ., 4, ., 4 | 0.3692 | 0.9263 | 0.8585 | yes | no |
| Q6GHZ2 | ODPA_STAAR | 1, ., 2, ., 4, ., 1 | 0.3653 | 0.9236 | 0.9486 | yes | no |
| Q4MTG0 | ODPA_BACCE | 1, ., 2, ., 4, ., 1 | 0.3549 | 0.8947 | 0.9164 | yes | no |
| P60089 | ODPA_STAAM | 1, ., 2, ., 4, ., 1 | 0.3681 | 0.9236 | 0.9486 | yes | no |
| Q8CPN3 | ODPA_STAES | 1, ., 2, ., 4, ., 1 | 0.3626 | 0.9236 | 0.9486 | yes | no |
| P50136 | ODBA_MOUSE | 1, ., 2, ., 4, ., 4 | 0.4773 | 0.9868 | 0.8484 | yes | no |
| P21881 | ODPA_BACSU | 1, ., 2, ., 4, ., 1 | 0.3569 | 0.8947 | 0.9164 | yes | no |
| Q820A6 | ODPA_STAAN | 1, ., 2, ., 4, ., 1 | 0.3681 | 0.9236 | 0.9486 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 380 | |||
| cd02000 | 293 | cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosph | 1e-144 | |
| COG1071 | 358 | COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogena | 1e-128 | |
| TIGR03181 | 341 | TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E | 1e-124 | |
| pfam00676 | 303 | pfam00676, E1_dh, Dehydrogenase E1 component | 1e-111 | |
| TIGR03182 | 315 | TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E | 3e-70 | |
| PLN02269 | 362 | PLN02269, PLN02269, Pyruvate dehydrogenase E1 comp | 6e-44 | |
| CHL00149 | 341 | CHL00149, odpA, pyruvate dehydrogenase E1 componen | 3e-42 | |
| PLN02374 | 433 | PLN02374, PLN02374, pyruvate dehydrogenase (acetyl | 2e-35 | |
| cd00568 | 168 | cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) | 1e-11 | |
| cd02012 | 255 | cd02012, TPP_TK, Thiamine pyrophosphate (TPP) fami | 2e-10 | |
| PRK05899 | 586 | PRK05899, PRK05899, transketolase; Reviewed | 8e-08 | |
| COG3959 | 243 | COG3959, COG3959, Transketolase, N-terminal subuni | 3e-06 | |
| cd02002 | 178 | cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) fa | 5e-05 | |
| COG0021 | 663 | COG0021, TktA, Transketolase [Carbohydrate transpo | 4e-04 | |
| cd02007 | 195 | cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) fam | 0.002 |
| >gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) | Back alignment and domain information |
|---|
Score = 409 bits (1054), Expect = e-144
Identities = 124/294 (42%), Positives = 178/294 (60%), Gaps = 2/294 (0%)
Query: 41 MYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTSGEEAINIASAAAIKNDDFVVPQYREPGV 99
+Y MV ++ D E RQG+I FY + G+EA+ + AAA++ D+V P YR+ G
Sbjct: 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGH 60
Query: 100 LLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYAL 159
L RG ++E + FG + KGR +H G + N+F + + Q+P A GAA AL
Sbjct: 61 ALARGVDLKEMLAELFGKETGPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALAL 120
Query: 160 KMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDG 219
K +D AV +FGDG T+EGDFH ALNF+A+ + PVIF+C NNG+AISTP S Q
Sbjct: 121 KYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAISTPTSRQTAGTS 180
Query: 220 AVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDST 279
+ AYG+ IRVDGND LA+Y A A E A G P LIEA+TYR+G H+TSDD +
Sbjct: 181 IADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPS 240
Query: 280 KYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEA 333
+YR +E+E W+ +DP+ R RK++ G + + + + V+ ++ A++ A
Sbjct: 241 RYRTKEEVEEWK-KRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEFA 293
|
PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). Length = 293 |
| >gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 371 bits (955), Expect = e-128
Identities = 138/356 (38%), Positives = 205/356 (57%), Gaps = 6/356 (1%)
Query: 15 YRVLDDDGQPFPDSSFV--KVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTS 71
RVLD+DG+ + +S+ +++Y M+ ++ D + QRQG+I FY
Sbjct: 4 IRVLDEDGRAVDELPGPNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYI 63
Query: 72 GEEAINIASAAAIKND-DFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIH 130
G+EA+ + +AAA++ D++ P YR+ G LL RG ++E + G KGR +H
Sbjct: 64 GQEAVQVGAAAALRPGEDWIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMH 123
Query: 131 YGSNKHNYFTVSSTIATQLPHAVGAAYALKM-DRKDACAVTYFGDGGTSEGDFHAALNFS 189
Y + + S + TQ+P A GAA ALK KD AV +FGDG T++GDFH ALNF+
Sbjct: 124 YSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFA 183
Query: 190 AVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAA 249
AV + PV+F+ NN +AIS P S Q ++ + AYG+ +RVDGND LA+Y A A
Sbjct: 184 AVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEA 243
Query: 250 REMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGW 309
E A P LIEA+TYR G H+TSDD +KYR +E+E W+ +DP+ R RK++ G
Sbjct: 244 VERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWK-KRDPIVRLRKYLIEAGI 302
Query: 310 WNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRE 365
+ + + + + ++ A++ AE + P +S+LF DVY P +L EQ L E
Sbjct: 303 LSEEELEAIEAEAKAEVDEAVEFAEASPYPDVSELFEDVYAEGPPHLEEQREELEE 358
|
Length = 358 |
| >gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Score = 361 bits (930), Expect = e-124
Identities = 143/352 (40%), Positives = 194/352 (55%), Gaps = 18/352 (5%)
Query: 13 PCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEA---QRQGRISFYLT 69
+VLD+DG +S+ +++Y DMV + DT +A QRQGR+ Y
Sbjct: 1 ELVQVLDEDGNVVDPEPAPDLSDEELVELYRDMVLTRRFDT---KALALQRQGRLGTYAP 57
Query: 70 TSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPI 129
G+EA + SA A++ DD+V P YR+ +L RG + E G++ +G P
Sbjct: 58 NLGQEAAQVGSALALRKDDWVFPSYRDHAAMLARGVPLVEILLYWRGDE----RGSWDP- 112
Query: 130 HYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFS 189
N + I TQ HA G AYALK+ +D AVTYFGDGGTSEGDF+ ALNF+
Sbjct: 113 ----EGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFA 168
Query: 190 AVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAA 249
V +APV+F +NN WAIS P S Q + K AYG+ ++VDGND LA+Y+ A
Sbjct: 169 GVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEA 228
Query: 250 REMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEI-EWWRTTQDPVTRFRKWIESNG 308
E A G P LIEA+TYR+G HTT+DD T+YR +E EW + DP+ R RK++E G
Sbjct: 229 VERARSGGGPTLIEAVTYRLGPHTTADDPTRYRTKEEEEEWRKK--DPILRLRKYLERKG 286
Query: 309 WWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
W+ + E L ++ A+ EA PP+ D+F VY P L EQ
Sbjct: 287 LWDEEQEEALEEEAEAEVAEAVAEALALPPPPVDDIFDHVYAELPPELEEQR 338
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc [Energy metabolism, Pyruvate dehydrogenase]. Length = 341 |
| >gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component | Back alignment and domain information |
|---|
Score = 326 bits (837), Expect = e-111
Identities = 115/302 (38%), Positives = 166/302 (54%), Gaps = 3/302 (0%)
Query: 44 DMVTL-QTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLW 102
M+TL + D QR+G F +G+EA+ + AAA+ D+V+P YR+ G LL
Sbjct: 2 RMMTLRRMEDARDALYQRKGIRGFCHLYAGQEALQVGIAAALNPGDYVIPTYRDHGNLLA 61
Query: 103 RGFSMQEFANQCFGNK--ADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 160
RG S+++ + GN+ GKG M +Y + ++ + + Q+P G A A K
Sbjct: 62 RGVSLEQVMAELTGNEAGCSKGKGGSMHGYYAPKNNRFYGGNGIVGAQVPLGAGIALAAK 121
Query: 161 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 220
K A+T FGDG T++G F ALNF+A+ + PVIF+C NN +AISTP S
Sbjct: 122 YRGKKEVAITLFGDGATNQGQFFEALNFAALWKLPVIFVCENNQYAISTPAERSSASTTY 181
Query: 221 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTK 280
+ R YG+ IRVDG D LA+Y AV A E A P LIE +TYR G H+ SDD +
Sbjct: 182 ADRARGYGIPGIRVDGMDPLAVYQAVKFAAERARTGNGPTLIELVTYRYGGHSMSDDPST 241
Query: 281 YRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPP 340
YR +E+E R +DP+ R +K + S G + + E+ VRK+I A+++AE +P
Sbjct: 242 YRTREEVEEVRKKKDPIKRLKKHLVSRGVVSEEELKEIEKEVRKEIEEAVKKAESDPEPN 301
Query: 341 IS 342
Sbjct: 302 PE 303
|
This family uses thiamine pyrophosphate as a cofactor. This family includes pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate dehydrogenase. Length = 303 |
| >gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Score = 222 bits (569), Expect = 3e-70
Identities = 100/317 (31%), Positives = 166/317 (52%), Gaps = 11/317 (3%)
Query: 38 AIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYRE 96
+++Y DM+ ++ + + G+I F G+EA+ + AA+K DD+V+ YR+
Sbjct: 4 LLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRD 63
Query: 97 PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAA 156
G L RG +E + G + KG+ +H + N++ + Q+P A G A
Sbjct: 64 HGHALARGVPPKEVMAELTGRETGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLA 123
Query: 157 YALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
+A K D +FGDG ++G F+ + N +A+ + PVIF+ NN +A+ T + R
Sbjct: 124 FANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYAMGTAVE---R 180
Query: 217 SDGAV----VKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHH 272
S +V +G ++G+ RVDG D LA+ A A E A PIL+E TYR H
Sbjct: 181 SS-SVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGH 239
Query: 273 TTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQE 332
+ S D KYR +E+E WR +DP+ + + + G + + E+ VR ++ A++
Sbjct: 240 SMS-DPAKYRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEEAVEF 297
Query: 333 AEKAEKPPISDLFTDVY 349
AE + +PP+ +L+TDVY
Sbjct: 298 AENSPEPPVEELYTDVY 314
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc [Energy metabolism, Pyruvate dehydrogenase]. Length = 315 |
| >gnl|CDD|215152 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit alpha | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 6e-44
Identities = 101/336 (30%), Positives = 170/336 (50%), Gaps = 26/336 (7%)
Query: 26 PDSSFVKVSEGVAIKMYNDMVTLQTMDT---IFYEAQR-QGRISFYLTTSGEEAINIASA 81
P S V+ S+ + + DM ++ M+ Y+A+ +G Y G+EA+ +
Sbjct: 20 PPSRTVETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLY---DGQEAVAVGME 76
Query: 82 AAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTV 141
AAI +D ++ YR+ L RG ++ E + G K +G+ +H+ N++
Sbjct: 77 AAITKEDAIITAYRDHCTHLGRGGTVLEVFAELMGRKDGCSRGKGGSMHFYKKDANFYGG 136
Query: 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 201
+ Q+P G A+A K ++++ A +GDG ++G ALN +A+ + PVIF+C
Sbjct: 137 HGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCE 196
Query: 202 NNGWAISTPI-----SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGE 256
NN + + T S + G V G ++VDG D LA+ A A+E A+
Sbjct: 197 NNHYGMGTAEWRAAKSPAYYKRGDYVPG-------LKVDGMDVLAVKQACKFAKEHALSN 249
Query: 257 GRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIES 316
G PI++E TYR H+ SD + YR DEI R +DP+ R RK + ++ E+
Sbjct: 250 G-PIVLEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELAT---EA 305
Query: 317 ELRS---SVRKQILHALQEAEKAEKPPISDLFTDVY 349
EL+ +RK++ A+ +A+++ P S+LFT+VY
Sbjct: 306 ELKDIEKEIRKEVDDAVAKAKESPMPDPSELFTNVY 341
|
Length = 362 |
| >gnl|CDD|177069 CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit; Reviewed | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 3e-42
Identities = 94/344 (27%), Positives = 159/344 (46%), Gaps = 30/344 (8%)
Query: 24 PFPDSSFVKVSEGVAIKMYNDMVTLQTMD----TIFYEAQRQGRISFYLTTSGEEAINIA 79
P +S+ ++ + +Y DM+ + + ++Y + G + Y +G+EA++
Sbjct: 8 PLTNSNENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLY---NGQEAVSTG 64
Query: 80 SAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF 139
+ D+V YR+ L +G + + FG + +GR +H S HN+
Sbjct: 65 VIKLLAETDYVCSTYRDHVHALSKGVPPKNVMAELFGKETGCSRGRGGSMHIFSAPHNFL 124
Query: 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVT--------YFGDGGTSEGDFHAALNFSAV 191
+ I +P A+GAA+ + R+ +FGDG T+ G F LN + +
Sbjct: 125 GGFAFIGEGIPIALGAAFQ-SIYRQQVLKEVQPLRVTACFFGDGTTNNGQFFECLNMAVL 183
Query: 192 TEAPVIFICRNNGWAI------STPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSA 245
+ P+IF+ NN WAI ST I + + K A+G+ I VDG D LA+
Sbjct: 184 WKLPIIFVVENNQWAIGMAHHRSTSIPEIHK------KAEAFGLPGIEVDGMDVLAVREV 237
Query: 246 VHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIE 305
A E A P LIEALTYR H+ +D + R E E W +DP+ + + +I
Sbjct: 238 AKEAVERARQGDGPTLIEALTYRFRGHSLADPD-ELRSKQEKEAW-VARDPIKKLKSYII 295
Query: 306 SNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVY 349
N + ++++ V+ +I A+Q A + +P ISDL ++
Sbjct: 296 DNELASQKELNKIQREVKIEIEQAVQFAISSPEPNISDLKKYLF 339
|
Length = 341 |
| >gnl|CDD|215213 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring) | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 2e-35
Identities = 96/347 (27%), Positives = 165/347 (47%), Gaps = 32/347 (9%)
Query: 22 GQPFPDSSFVKVSEGVAIKMYNDMVTLQTMD----TIFYEAQRQGRISFYLTTSGEEAIN 77
+S + V+ +++Y DMV ++ + ++Y + G + Y +G+EA++
Sbjct: 72 KNSKASASDLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLY---NGQEAVS 128
Query: 78 IASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHN 137
+K DD VV YR+ L +G + ++ FG +G+ +H S +HN
Sbjct: 129 TGFIKLLKKDDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHN 188
Query: 138 YFTVSSTIATQLPHAVGAAYALKMDRK-------DACAVTYFGDGGTSEGDFHAALNFSA 190
+ I +P A GAA++ K R+ D + +FGDG + G F LN +A
Sbjct: 189 LLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAA 248
Query: 191 VTEAPVIFICRNNGWAISTPISDQFR--SDGAV-VKGRAYGVRSIRVDGNDALAIYSAVH 247
+ + P++F+ NN WAI R SD + KG A+G+ + VDG D L +
Sbjct: 249 LWKLPIVFVVENNLWAIGM---SHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAK 305
Query: 248 AAREMA-IGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIES 306
A E A GEG P L+E TYR H+ +D P ++ + +DP+ +K++
Sbjct: 306 EAIERARRGEG-PTLVECETYRFRGHSLADPDELRDPAEKAHY--AARDPIAALKKYLIE 362
Query: 307 NGWWNGDIESELRSSVRKQILHALQE----AEKAEKPPISDLFTDVY 349
NG E+EL+ ++ K+I +++ A+ + PP S L +V+
Sbjct: 363 NGLAT---EAELK-AIEKKIDEVVEDAVEFADASPLPPRSQLLENVF 405
|
Length = 433 |
| >gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-11
Identities = 40/145 (27%), Positives = 52/145 (35%), Gaps = 29/145 (20%)
Query: 136 HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN--FSAVTE 193
T + LP A+GAA A D V GDGG F +AV
Sbjct: 39 FLTSTGFGAMGYGLPAAIGAALA----APDRPVVCIAGDGG-----FMMTGQELATAVRY 89
Query: 194 -APVIFICRNNGWAISTPISDQFRSDGAVVK-----------GRAYGVRSIRVDGNDALA 241
PVI + NNG + + + G V AYG + +RV+ + L
Sbjct: 90 GLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRVEDPEDLE 149
Query: 242 IYSAVHAAREMAIGEGRPILIEALT 266
AA A+ G P LIE T
Sbjct: 150 ------AALAEALAAGGPALIEVKT 168
|
These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. Length = 168 |
| >gnl|CDD|238970 cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 2e-10
Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE-APVIFICRNNGWAI 207
L AVG A A K+ D GDG EG A +F+ + +I I +N I
Sbjct: 111 LSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQI 170
Query: 208 STPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266
P D ++ K A+G I VDG+D I +A+ A++ +G+P LI A T
Sbjct: 171 DGPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKK---SKGKPTLIIAKT 226
|
In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity. Length = 255 |
| >gnl|CDD|235639 PRK05899, PRK05899, transketolase; Reviewed | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 8e-08
Identities = 44/132 (33%), Positives = 57/132 (43%), Gaps = 22/132 (16%)
Query: 149 LPHAVGAAYALKM-----DRKDACAVTYF-----GDGGTSEGDFHAALNFSAVTE--APV 196
L +AVG A A K +R V ++ GDG EG H A + A +
Sbjct: 124 LANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSL-AGHLKLGNL 182
Query: 197 IFICRNNGWAISTPISDQFRSDGAVVKGR--AYGVRSIRVDGNDALAIYSAVHAAREMAI 254
I I +N +I P F D VK R AYG I VDG+D AI +A+ A+
Sbjct: 183 IVIYDDNRISIDGPTEGWFTED---VKKRFEAYGWHVIEVDGHDVEAIDAAIEEAKA--- 236
Query: 255 GEGRPILIEALT 266
+P LI A T
Sbjct: 237 -STKPTLIIAKT 247
|
Length = 586 |
| >gnl|CDD|226468 COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 3e-06
Identities = 32/120 (26%), Positives = 46/120 (38%), Gaps = 6/120 (5%)
Query: 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP--VIFICRNNGWA 206
L AVG A K+ GDG EG A +A + + + RN
Sbjct: 125 LSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIVDRNKL-Q 183
Query: 207 ISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266
+ + + K A+G I VDG+D I A+ A+ +GRP +I A T
Sbjct: 184 LDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGS---KGRPTVIIAKT 240
|
Length = 243 |
| >gnl|CDD|238960 cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 5e-05
Identities = 36/143 (25%), Positives = 50/143 (34%), Gaps = 44/143 (30%)
Query: 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFS---AVTEA----PVIF-IC 200
LP AVGAA A DRK + GDG + ++ T A PV I
Sbjct: 55 LPAAVGAALANP-DRKVVAII---GDG---------SFMYTIQALWTAARYGLPVTVVIL 101
Query: 201 RNNGWAISTPISDQFRSDGAVVKG-----------------RAYGVRSIRVDGNDALAIY 243
N G+ + +G +A+GV + RV+ + L
Sbjct: 102 NNRGYGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERVETPEELD-- 159
Query: 244 SAVHAAREMAIGEGRPILIEALT 266
A A+ EG P LIE +
Sbjct: 160 ----EALREALAEGGPALIEVVV 178
|
P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors. Length = 178 |
| >gnl|CDD|223100 COG0021, TktA, Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 43/132 (32%), Positives = 55/132 (41%), Gaps = 20/132 (15%)
Query: 149 LPHAVGAAYALKM-----DRKDACAV---TY--FGDGGTSEGDFHAALNFSAV-TEAPVI 197
L +AVG A A K +R V TY GDG EG H A + + +I
Sbjct: 122 LANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLI 181
Query: 198 FICRNNGWAISTPISDQFRSDGAVVKGR--AYGVRSIRV-DGNDALAIYSAVHAAREMAI 254
+ +N +I S F D V R AYG IRV DG+D AI A+ A+
Sbjct: 182 VLYDSNDISIDGDTSLSFTED---VAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKA--- 235
Query: 255 GEGRPILIEALT 266
+P LI T
Sbjct: 236 STDKPTLIIVKT 247
|
Length = 663 |
| >gnl|CDD|238965 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.002
Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 16/135 (11%)
Query: 135 KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA 194
+++ F + +T + A+G A A + K + GDG + G ALN + ++
Sbjct: 68 EYDAFGTGHS-STSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKS 126
Query: 195 PVIFICRNNGWAISTPISDQ---FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAARE 251
+I I +N +IS + F G R G VDG++ A+ + ++
Sbjct: 127 NMIVILNDNEMSISPNVGTPGNLFEELGF----RYIGP----VDGHNIEALIKVLKEVKD 178
Query: 252 MAIGEGRPILIEALT 266
+ P+L+ +T
Sbjct: 179 L----KGPVLLHVVT 189
|
Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6). Length = 195 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 380 | |||
| COG1071 | 358 | AcoA Pyruvate/2-oxoglutarate dehydrogenase complex | 100.0 | |
| KOG1182 | 432 | consensus Branched chain alpha-keto acid dehydroge | 100.0 | |
| PLN02269 | 362 | Pyruvate dehydrogenase E1 component subunit alpha | 100.0 | |
| CHL00149 | 341 | odpA pyruvate dehydrogenase E1 component alpha sub | 100.0 | |
| TIGR03181 | 341 | PDH_E1_alph_x pyruvate dehydrogenase E1 component, | 100.0 | |
| TIGR03182 | 315 | PDH_E1_alph_y pyruvate dehydrogenase E1 component, | 100.0 | |
| PLN02374 | 433 | pyruvate dehydrogenase (acetyl-transferring) | 100.0 | |
| KOG0225 | 394 | consensus Pyruvate dehydrogenase E1, alpha subunit | 100.0 | |
| PF00676 | 300 | E1_dh: Dehydrogenase E1 component; InterPro: IPR00 | 100.0 | |
| cd02000 | 293 | TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) | 100.0 | |
| PRK09404 | 924 | sucA 2-oxoglutarate dehydrogenase E1 component; Re | 100.0 | |
| TIGR00239 | 929 | 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon | 100.0 | |
| cd02016 | 265 | TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami | 100.0 | |
| PRK12270 | 1228 | kgd alpha-ketoglutarate decarboxylase; Reviewed | 100.0 | |
| PRK12315 | 581 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 100.0 | |
| COG3959 | 243 | Transketolase, N-terminal subunit [Carbohydrate tr | 100.0 | |
| KOG0450 | 1017 | consensus 2-oxoglutarate dehydrogenase, E1 subunit | 99.97 | |
| KOG0451 | 913 | consensus Predicted 2-oxoglutarate dehydrogenase, | 99.97 | |
| COG0567 | 906 | SucA 2-oxoglutarate dehydrogenase complex, dehydro | 99.97 | |
| PRK12754 | 663 | transketolase; Reviewed | 99.96 | |
| TIGR00232 | 653 | tktlase_bact transketolase, bacterial and yeast. T | 99.96 | |
| PF00456 | 332 | Transketolase_N: Transketolase, thiamine diphospha | 99.96 | |
| PRK12753 | 663 | transketolase; Reviewed | 99.96 | |
| cd02012 | 255 | TPP_TK Thiamine pyrophosphate (TPP) family, Transk | 99.96 | |
| PTZ00089 | 661 | transketolase; Provisional | 99.96 | |
| PRK05899 | 624 | transketolase; Reviewed | 99.96 | |
| cd02007 | 195 | TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s | 99.95 | |
| cd02017 | 386 | TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) fam | 99.95 | |
| PLN02790 | 654 | transketolase | 99.95 | |
| PRK05444 | 580 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 99.94 | |
| COG0021 | 663 | TktA Transketolase [Carbohydrate transport and met | 99.93 | |
| TIGR00759 | 885 | aceE pyruvate dehydrogenase E1 component, homodime | 99.93 | |
| cd02011 | 227 | TPP_PK Thiamine pyrophosphate (TPP) family, Phosph | 99.93 | |
| TIGR00204 | 617 | dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s | 99.93 | |
| TIGR03186 | 889 | AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S | 99.92 | |
| PRK12571 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 99.91 | |
| PLN02234 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase | 99.91 | |
| PRK13012 | 896 | 2-oxoacid dehydrogenase subunit E1; Provisional | 99.91 | |
| KOG0523 | 632 | consensus Transketolase [Carbohydrate transport an | 99.9 | |
| PRK09405 | 891 | aceE pyruvate dehydrogenase subunit E1; Reviewed | 99.9 | |
| PLN02582 | 677 | 1-deoxy-D-xylulose-5-phosphate synthase | 99.88 | |
| PRK05261 | 785 | putative phosphoketolase; Provisional | 99.82 | |
| PRK11864 | 300 | 2-ketoisovalerate ferredoxin oxidoreductase subuni | 99.8 | |
| cd02004 | 172 | TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam | 99.77 | |
| cd00568 | 168 | TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa | 99.76 | |
| cd02013 | 196 | TPP_Xsc_like Thiamine pyrophosphate (TPP) family, | 99.76 | |
| PF13292 | 270 | DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate syn | 99.75 | |
| cd02006 | 202 | TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s | 99.74 | |
| cd02002 | 178 | TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC | 99.73 | |
| COG1154 | 627 | Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m | 99.72 | |
| cd02014 | 178 | TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv | 99.72 | |
| PRK06163 | 202 | hypothetical protein; Provisional | 99.71 | |
| cd02015 | 186 | TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet | 99.7 | |
| cd03372 | 179 | TPP_ComE Thiamine pyrophosphate (TPP) family, ComE | 99.7 | |
| cd02003 | 205 | TPP_IolD Thiamine pyrophosphate (TPP) family, IolD | 99.69 | |
| cd02008 | 178 | TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, | 99.69 | |
| TIGR03846 | 181 | sulfopy_beta sulfopyruvate decarboxylase, beta sub | 99.69 | |
| cd03371 | 188 | TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp | 99.69 | |
| cd02001 | 157 | TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil | 99.69 | |
| cd02010 | 177 | TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto | 99.69 | |
| PLN02225 | 701 | 1-deoxy-D-xylulose-5-phosphate synthase | 99.67 | |
| cd02005 | 183 | TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, | 99.66 | |
| PRK07524 | 535 | hypothetical protein; Provisional | 99.64 | |
| PF02775 | 153 | TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter | 99.64 | |
| PRK08327 | 569 | acetolactate synthase catalytic subunit; Validated | 99.63 | |
| cd02009 | 175 | TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa | 99.63 | |
| TIGR01504 | 588 | glyox_carbo_lig glyoxylate carboligase. Glyoxylate | 99.61 | |
| PRK07092 | 530 | benzoylformate decarboxylase; Reviewed | 99.6 | |
| PRK06154 | 565 | hypothetical protein; Provisional | 99.6 | |
| PRK08266 | 542 | hypothetical protein; Provisional | 99.59 | |
| PRK12474 | 518 | hypothetical protein; Provisional | 99.59 | |
| COG0028 | 550 | IlvB Thiamine pyrophosphate-requiring enzymes [ace | 99.59 | |
| cd03375 | 193 | TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o | 99.58 | |
| PRK06725 | 570 | acetolactate synthase 3 catalytic subunit; Validat | 99.58 | |
| PRK06546 | 578 | pyruvate dehydrogenase; Provisional | 99.58 | |
| PRK09107 | 595 | acetolactate synthase 3 catalytic subunit; Validat | 99.57 | |
| cd03376 | 235 | TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam | 99.57 | |
| PRK11269 | 591 | glyoxylate carboligase; Provisional | 99.57 | |
| PRK07586 | 514 | hypothetical protein; Validated | 99.57 | |
| PRK05858 | 542 | hypothetical protein; Provisional | 99.56 | |
| PRK06882 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 99.56 | |
| PRK07064 | 544 | hypothetical protein; Provisional | 99.56 | |
| PRK07979 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 99.56 | |
| TIGR03297 | 361 | Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi | 99.56 | |
| TIGR02418 | 539 | acolac_catab acetolactate synthase, catabolic. Ace | 99.55 | |
| PRK08199 | 557 | thiamine pyrophosphate protein; Validated | 99.55 | |
| PRK09124 | 574 | pyruvate dehydrogenase; Provisional | 99.55 | |
| PRK06112 | 578 | acetolactate synthase catalytic subunit; Validated | 99.55 | |
| PRK07418 | 616 | acetolactate synthase 3 catalytic subunit; Reviewe | 99.55 | |
| PLN02573 | 578 | pyruvate decarboxylase | 99.55 | |
| PRK07710 | 571 | acetolactate synthase catalytic subunit; Reviewed | 99.54 | |
| PRK06965 | 587 | acetolactate synthase 3 catalytic subunit; Validat | 99.54 | |
| PRK08979 | 572 | acetolactate synthase 3 catalytic subunit; Validat | 99.54 | |
| TIGR02720 | 575 | pyruv_oxi_spxB pyruvate oxidase. Members of this f | 99.53 | |
| PRK06457 | 549 | pyruvate dehydrogenase; Provisional | 99.53 | |
| TIGR03393 | 539 | indolpyr_decarb indolepyruvate decarboxylase, Erwi | 99.53 | |
| PRK06466 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 99.52 | |
| PRK08617 | 552 | acetolactate synthase; Reviewed | 99.52 | |
| TIGR03254 | 554 | oxalate_oxc oxalyl-CoA decarboxylase. In a number | 99.52 | |
| PRK07525 | 588 | sulfoacetaldehyde acetyltransferase; Validated | 99.52 | |
| PRK08155 | 564 | acetolactate synthase catalytic subunit; Validated | 99.52 | |
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase | 99.52 | |
| cd02018 | 237 | TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru | 99.52 | |
| PRK08527 | 563 | acetolactate synthase 3 catalytic subunit; Validat | 99.52 | |
| PRK08273 | 597 | thiamine pyrophosphate protein; Provisional | 99.52 | |
| PRK08322 | 547 | acetolactate synthase; Reviewed | 99.51 | |
| CHL00099 | 585 | ilvB acetohydroxyacid synthase large subunit | 99.51 | |
| PRK05778 | 301 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 99.51 | |
| PRK09628 | 277 | oorB 2-oxoglutarate-acceptor oxidoreductase subuni | 99.51 | |
| TIGR00118 | 558 | acolac_lg acetolactate synthase, large subunit, bi | 99.51 | |
| PRK06048 | 561 | acetolactate synthase 3 catalytic subunit; Reviewe | 99.5 | |
| PRK08611 | 576 | pyruvate oxidase; Provisional | 99.5 | |
| PLN02470 | 585 | acetolactate synthase | 99.5 | |
| TIGR03394 | 535 | indol_phenyl_DC indolepyruvate/phenylpyruvate deca | 99.5 | |
| PRK06456 | 572 | acetolactate synthase catalytic subunit; Reviewed | 99.49 | |
| PRK09259 | 569 | putative oxalyl-CoA decarboxylase; Validated | 99.49 | |
| PRK08978 | 548 | acetolactate synthase 2 catalytic subunit; Reviewe | 99.49 | |
| COG2609 | 887 | AceE Pyruvate dehydrogenase complex, dehydrogenase | 99.49 | |
| PRK11869 | 280 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 99.46 | |
| PRK06276 | 586 | acetolactate synthase catalytic subunit; Reviewed | 99.46 | |
| PRK07282 | 566 | acetolactate synthase catalytic subunit; Reviewed | 99.46 | |
| PRK07789 | 612 | acetolactate synthase 1 catalytic subunit; Validat | 99.45 | |
| TIGR02177 | 287 | PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta | 99.44 | |
| PRK07449 | 568 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 | 99.43 | |
| PRK11866 | 279 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 99.42 | |
| PRK11867 | 286 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 99.41 | |
| TIGR03336 | 595 | IOR_alpha indolepyruvate ferredoxin oxidoreductase | 99.33 | |
| COG3961 | 557 | Pyruvate decarboxylase and related thiamine pyroph | 99.32 | |
| PRK11865 | 299 | pyruvate ferredoxin oxidoreductase subunit beta; P | 99.29 | |
| PF09364 | 379 | XFP_N: XFP N-terminal domain; InterPro: IPR018970 | 99.2 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 99.2 | |
| KOG1185 | 571 | consensus Thiamine pyrophosphate-requiring enzyme | 99.17 | |
| KOG4166 | 675 | consensus Thiamine pyrophosphate-requiring enzyme | 98.95 | |
| COG3960 | 592 | Glyoxylate carboligase [General function predictio | 98.93 | |
| KOG1184 | 561 | consensus Thiamine pyrophosphate-requiring enzyme | 98.93 | |
| COG3962 | 617 | Acetolactate synthase [Amino acid transport and me | 98.7 | |
| COG3957 | 793 | Phosphoketolase [Carbohydrate transport and metabo | 98.5 | |
| COG1013 | 294 | PorB Pyruvate:ferredoxin oxidoreductase and relate | 98.46 | |
| COG4231 | 640 | Indolepyruvate ferredoxin oxidoreductase, alpha an | 97.99 | |
| COG1165 | 566 | MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-car | 97.7 | |
| cd03377 | 365 | TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), | 97.33 | |
| cd06586 | 154 | TPP_enzyme_PYR Pyrimidine (PYR) binding domain of | 96.94 | |
| cd07039 | 164 | TPP_PYR_POX Pyrimidine (PYR) binding domain of POX | 96.92 | |
| cd07035 | 155 | TPP_PYR_POX_like Pyrimidine (PYR) binding domain o | 96.85 | |
| PRK13030 | 1159 | 2-oxoacid ferredoxin oxidoreductase; Provisional | 96.78 | |
| TIGR03845 | 157 | sulfopyru_alph sulfopyruvate decarboxylase, alpha | 96.69 | |
| TIGR02176 | 1165 | pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid | 96.66 | |
| cd07034 | 160 | TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi | 96.55 | |
| PF02776 | 172 | TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter | 96.52 | |
| PRK09193 | 1165 | indolepyruvate ferredoxin oxidoreductase; Validate | 96.49 | |
| cd07038 | 162 | TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom | 96.47 | |
| PRK13029 | 1186 | 2-oxoacid ferredoxin oxidoreductase; Provisional | 95.83 | |
| cd07037 | 162 | TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2- | 95.6 | |
| PRK08611 | 576 | pyruvate oxidase; Provisional | 94.82 | |
| TIGR03254 | 554 | oxalate_oxc oxalyl-CoA decarboxylase. In a number | 94.79 | |
| cd07033 | 156 | TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai | 94.74 | |
| PRK08659 | 376 | 2-oxoglutarate ferredoxin oxidoreductase subunit a | 94.67 | |
| COG0028 | 550 | IlvB Thiamine pyrophosphate-requiring enzymes [ace | 94.66 | |
| PRK07119 | 352 | 2-ketoisovalerate ferredoxin reductase; Validated | 94.59 | |
| TIGR03297 | 361 | Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi | 94.59 | |
| PRK07525 | 588 | sulfoacetaldehyde acetyltransferase; Validated | 94.57 | |
| PRK07524 | 535 | hypothetical protein; Provisional | 94.25 | |
| PRK09259 | 569 | putative oxalyl-CoA decarboxylase; Validated | 94.14 | |
| PRK06457 | 549 | pyruvate dehydrogenase; Provisional | 94.12 | |
| PRK07064 | 544 | hypothetical protein; Provisional | 94.01 | |
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase | 94.0 | |
| PRK06112 | 578 | acetolactate synthase catalytic subunit; Validated | 93.92 | |
| PRK07979 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 93.86 | |
| PRK06456 | 572 | acetolactate synthase catalytic subunit; Reviewed | 93.79 | |
| PRK08266 | 542 | hypothetical protein; Provisional | 93.79 | |
| PRK08366 | 390 | vorA 2-ketoisovalerate ferredoxin oxidoreductase s | 93.78 | |
| PRK06276 | 586 | acetolactate synthase catalytic subunit; Reviewed | 93.68 | |
| PRK07418 | 616 | acetolactate synthase 3 catalytic subunit; Reviewe | 93.66 | |
| PRK08322 | 547 | acetolactate synthase; Reviewed | 93.64 | |
| PRK11269 | 591 | glyoxylate carboligase; Provisional | 93.64 | |
| PRK08273 | 597 | thiamine pyrophosphate protein; Provisional | 93.63 | |
| PF01855 | 230 | POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta | 93.6 | |
| PRK06725 | 570 | acetolactate synthase 3 catalytic subunit; Validat | 93.52 | |
| PRK06466 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 93.49 | |
| PRK07586 | 514 | hypothetical protein; Validated | 93.48 | |
| PRK07789 | 612 | acetolactate synthase 1 catalytic subunit; Validat | 93.45 | |
| PLN02470 | 585 | acetolactate synthase | 93.43 | |
| TIGR01504 | 588 | glyox_carbo_lig glyoxylate carboligase. Glyoxylate | 93.4 | |
| PRK07710 | 571 | acetolactate synthase catalytic subunit; Reviewed | 93.3 | |
| PRK08978 | 548 | acetolactate synthase 2 catalytic subunit; Reviewe | 93.22 | |
| TIGR00118 | 558 | acolac_lg acetolactate synthase, large subunit, bi | 93.19 | |
| PRK12474 | 518 | hypothetical protein; Provisional | 92.97 | |
| PRK09107 | 595 | acetolactate synthase 3 catalytic subunit; Validat | 92.92 | |
| cd07036 | 167 | TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding | 92.86 | |
| TIGR03394 | 535 | indol_phenyl_DC indolepyruvate/phenylpyruvate deca | 92.82 | |
| PRK08155 | 564 | acetolactate synthase catalytic subunit; Validated | 92.82 | |
| PRK06965 | 587 | acetolactate synthase 3 catalytic subunit; Validat | 92.78 | |
| PRK08979 | 572 | acetolactate synthase 3 catalytic subunit; Validat | 92.72 | |
| PF02779 | 178 | Transket_pyr: Transketolase, pyrimidine binding do | 92.69 | |
| TIGR02720 | 575 | pyruv_oxi_spxB pyruvate oxidase. Members of this f | 92.69 | |
| PRK08199 | 557 | thiamine pyrophosphate protein; Validated | 92.62 | |
| PRK06882 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 92.6 | |
| TIGR00204 | 617 | dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s | 92.44 | |
| PRK06048 | 561 | acetolactate synthase 3 catalytic subunit; Reviewe | 92.38 | |
| PRK09627 | 375 | oorA 2-oxoglutarate-acceptor oxidoreductase subuni | 92.36 | |
| PRK07282 | 566 | acetolactate synthase catalytic subunit; Reviewed | 92.11 | |
| PRK08367 | 394 | porA pyruvate ferredoxin oxidoreductase subunit al | 92.07 | |
| PRK05858 | 542 | hypothetical protein; Provisional | 92.01 | |
| PRK08327 | 569 | acetolactate synthase catalytic subunit; Validated | 91.92 | |
| TIGR02418 | 539 | acolac_catab acetolactate synthase, catabolic. Ace | 91.89 | |
| PRK08527 | 563 | acetolactate synthase 3 catalytic subunit; Validat | 91.81 | |
| TIGR03710 | 562 | OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s | 91.78 | |
| PRK08617 | 552 | acetolactate synthase; Reviewed | 91.57 | |
| PRK09622 | 407 | porA pyruvate flavodoxin oxidoreductase subunit al | 91.51 | |
| CHL00099 | 585 | ilvB acetohydroxyacid synthase large subunit | 91.24 | |
| KOG4166 | 675 | consensus Thiamine pyrophosphate-requiring enzyme | 91.16 | |
| PLN02683 | 356 | pyruvate dehydrogenase E1 component subunit beta | 90.75 | |
| PRK09124 | 574 | pyruvate dehydrogenase; Provisional | 90.6 | |
| PLN02573 | 578 | pyruvate decarboxylase | 90.39 | |
| PRK12571 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 90.36 | |
| TIGR00232 | 653 | tktlase_bact transketolase, bacterial and yeast. T | 90.3 | |
| PRK06154 | 565 | hypothetical protein; Provisional | 90.23 | |
| PRK06546 | 578 | pyruvate dehydrogenase; Provisional | 90.09 | |
| PRK05444 | 580 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 90.07 | |
| PRK11892 | 464 | pyruvate dehydrogenase subunit beta; Provisional | 90.03 | |
| PRK07092 | 530 | benzoylformate decarboxylase; Reviewed | 89.85 | |
| PLN02234 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase | 89.84 | |
| PRK05899 | 624 | transketolase; Reviewed | 89.82 | |
| PTZ00089 | 661 | transketolase; Provisional | 89.29 | |
| PLN02582 | 677 | 1-deoxy-D-xylulose-5-phosphate synthase | 89.22 | |
| TIGR00173 | 432 | menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex | 89.17 | |
| PRK12315 | 581 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 88.56 | |
| PLN02225 | 701 | 1-deoxy-D-xylulose-5-phosphate synthase | 88.35 | |
| cd01460 | 266 | vWA_midasin VWA_Midasin: Midasin is a member of th | 88.17 | |
| TIGR03336 | 595 | IOR_alpha indolepyruvate ferredoxin oxidoreductase | 87.62 | |
| COG4032 | 172 | Predicted thiamine-pyrophosphate-binding protein [ | 87.57 | |
| PTZ00182 | 355 | 3-methyl-2-oxobutanate dehydrogenase; Provisional | 87.03 | |
| PRK12754 | 663 | transketolase; Reviewed | 86.74 | |
| COG0021 | 663 | TktA Transketolase [Carbohydrate transport and met | 86.36 | |
| PRK09212 | 327 | pyruvate dehydrogenase subunit beta; Validated | 86.21 | |
| PLN02790 | 654 | transketolase | 85.7 | |
| PRK12753 | 663 | transketolase; Reviewed | 85.52 | |
| COG0674 | 365 | PorA Pyruvate:ferredoxin oxidoreductase and relate | 85.18 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 84.1 | |
| CHL00144 | 327 | odpB pyruvate dehydrogenase E1 component beta subu | 81.54 |
| >COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-93 Score=691.09 Aligned_cols=351 Identities=38% Similarity=0.656 Sum_probs=336.7
Q ss_pred CeeEeeCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cccccchhHHHHHHHHhcCCCC-c
Q 016909 13 PCYRVLDDDGQPFPDSSFV--KVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTSGEEAINIASAAAIKND-D 88 (380)
Q Consensus 13 ~~~~~~~~~g~~~~~~~~~--~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~-~~~~~~GqEa~~~~~~~~l~~~-D 88 (380)
+.+++++.+|..+.+.... .+++++++++|++|+++|.||+++..++++|+++ |+|+++||||+++|++.+|+++ |
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D 81 (358)
T COG1071 2 SLIRVLDEDGRAVDELPGPNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGED 81 (358)
T ss_pred CceeccCcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCC
Confidence 5689999999988886444 7999999999999999999999999999999996 9999999999999999999965 9
Q ss_pred EEEccccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCc-e
Q 016909 89 FVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDA-C 167 (380)
Q Consensus 89 ~v~~~yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~-~ 167 (380)
|++++||+|+++|++|+++.++|++++|+.+|+|+|+++++|++++..++++.++++|+|+|+|+|+|+|.|+++.+. +
T Consensus 82 ~i~~~YR~h~~~l~~G~~~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~V 161 (358)
T COG1071 82 WIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGV 161 (358)
T ss_pred EeecccCccccceecCCCHHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999555 9
Q ss_pred eEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHH
Q 016909 168 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVH 247 (380)
Q Consensus 168 vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~ 247 (380)
++|++|||+++||.|||+||||+.|+|||||+|+||+|+||++...++..+.++.++.+||+|+++|||||+.+|+++++
T Consensus 162 a~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~ 241 (358)
T COG1071 162 AVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAK 241 (358)
T ss_pred EEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888877777777789999999999999999999999999
Q ss_pred HHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q 016909 248 AAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQIL 327 (380)
Q Consensus 248 ~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~ 327 (380)
+|++++|+++||+|||+.|||++|||++|||..||+++|+++|+ ++|||.+++++|++.|+||++++++|+++++++|+
T Consensus 242 ~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~-~~DPi~r~~~~L~~~g~~see~~~~i~~e~~~~V~ 320 (358)
T COG1071 242 EAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWK-KRDPIVRLRKYLIEAGILSEEELEAIEAEAKAEVD 320 (358)
T ss_pred HHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccCCHHHHHHHh-ccChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 59999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCccccccccCCCccHHHHHHHHH
Q 016909 328 HALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLR 364 (380)
Q Consensus 328 ~a~~~a~~~~~p~~~~~~~~vy~~~~~~~~~~~~~l~ 364 (380)
+|+++|+++|.|+++++|++||++.++.+.+|++.+.
T Consensus 321 ea~e~a~~~p~P~~~~~~~~Vy~~~~~~l~~q~~~~~ 357 (358)
T COG1071 321 EAVEFAEASPYPDVSELFEDVYAEGPPHLEEQREELE 357 (358)
T ss_pred HHHHHHHhCCCCChhHhhhcccccCChhHHHHHHhhc
Confidence 9999999999999999999999999999999987664
|
|
| >KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-84 Score=602.19 Aligned_cols=379 Identities=64% Similarity=1.081 Sum_probs=370.2
Q ss_pred CccccCCCCCCCCeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHH
Q 016909 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIAS 80 (380)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~ 80 (380)
|+||.+++...+|.|||+|.||.+++++..+.++.+..++||+.|++...+|..+.+.+|||+|+||+++.|+||+-+|.
T Consensus 51 l~fI~~~d~~~iPiYRV~d~~G~ii~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRiSFYmT~~GEEa~higS 130 (432)
T KOG1182|consen 51 LEFIQPSDTPRIPIYRVMDADGQIIDKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRISFYMTNFGEEAIHIGS 130 (432)
T ss_pred eeecCcccCCCCceEEEecCCCcccCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEEEeccchhhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcEEEccccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhh
Q 016909 81 AAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 81 ~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k 160 (380)
++||.+.|+|++.||..|+++.||+++++++.+++|+..+..+|++||+|+++++.+++..++++..++|.|+|+|+|.|
T Consensus 131 AAAL~p~Dli~gQYREaGVLlwRgftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tissplatqlpqAvGaaYa~k 210 (432)
T KOG1182|consen 131 AAALEPQDLIYGQYREAGVLLWRGFTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLATQLPQAVGAAYALK 210 (432)
T ss_pred hhhCCcccccccccccCceEEEcCccHHHHHHHhcCCccccccccccccccCccccceEEecchhhhccchhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCC-ceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCH
Q 016909 161 MDRKD-ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA 239 (380)
Q Consensus 161 ~~~~~-~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~ 239 (380)
++.++ ..+||++|||+.+||.+|.++|+|+..+.|+||+|-||+|+||||++++...+.++-+..+||+..++|||||+
T Consensus 211 ~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRVDGnD~ 290 (432)
T KOG1182|consen 211 MRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRVDGNDA 290 (432)
T ss_pred hcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCCceEEeccccceEEEEecCcch
Confidence 77655 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHH
Q 016909 240 LAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELR 319 (380)
Q Consensus 240 ~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~ 319 (380)
.+||.|+++|.+.+-...+|+|||+.|||.++||+|||.+.||+.+|++.|.+.++||.+||+|+.++|+|+|+...+++
T Consensus 291 lAvYnA~k~ARe~av~e~rPvliEamtYRvGHHSTSDDSt~YRsadEiq~W~~~~~pisrfr~~i~~~GWw~ee~E~~~r 370 (432)
T KOG1182|consen 291 LAVYNAVKEAREMAVTEQRPVLIEAMTYRVGHHSTSDDSTAYRSADEIQYWNKSRHPISRFRKYIESNGWWSEEDESELR 370 (432)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhhhhhhhccccCCCccccccchhhhhhhhcccCcHHHHHHHHHhcCCcChhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999987899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCccccccccCCCccHHHHHHHHHHHHHhCCCCCCCCCC
Q 016909 320 SSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSNVP 379 (380)
Q Consensus 320 ~~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~ 379 (380)
++++++|.++++.|++-++|++.+||+|||.++|.++++|...|++.++++|++||+..|
T Consensus 371 k~~rk~vl~a~~~aEk~~K~~~~~lF~dVYd~~P~~L~eq~~~l~~~i~~~~e~Yp~~~~ 430 (432)
T KOG1182|consen 371 KNIRKKVLEAIAAAEKKEKPNLTELFEDVYDEMPKNLREQELELKEHIEKHPEHYPLKDF 430 (432)
T ss_pred HHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhhhHhHHHHHHHHHHHHHhCcccCchhhc
Confidence 999999999999999999999999999999999999999999999999999999997644
|
|
| >PLN02269 Pyruvate dehydrogenase E1 component subunit alpha | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-81 Score=616.45 Aligned_cols=319 Identities=29% Similarity=0.477 Sum_probs=308.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhHHHHHHHHhcCCCCcEEEccccchHHHHHcCCCHHH
Q 016909 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQE 109 (380)
Q Consensus 31 ~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~~ 109 (380)
..+++++++++|+.|+++|.||+++.+++++|++ +|+|+++||||+++|++.+|+++||++++||+|+++|++|+++.+
T Consensus 25 ~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~~~~~ 104 (362)
T PLN02269 25 VETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGGTVLE 104 (362)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCCCHHH
Confidence 4789999999999999999999999999999999 699999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHH
Q 016909 110 FANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFS 189 (380)
Q Consensus 110 ~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A 189 (380)
+|++++|+.+|+|+|+++++|+.+++.|+++.++++|+++|+|+|+|+|.|+++.+.+++|++|||+++||.|||+||+|
T Consensus 105 ~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A 184 (362)
T PLN02269 105 VFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIA 184 (362)
T ss_pred HHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016909 190 AVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 190 ~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 269 (380)
+.|+||+||||+||+|+++++...+....++++++ +++|+++|||||+.+|+++++.|++++|+ +||+|||++|||+
T Consensus 185 ~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~--~~~p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR~ 261 (362)
T PLN02269 185 ALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRG--DYVPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRY 261 (362)
T ss_pred hccCcCEEEEEeCCCEeccCchhhhccchHHHHhh--cCCCeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCcC
Confidence 99999999999999999999988887777777655 68999999999999999999999999999 9999999999999
Q ss_pred CCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccccc
Q 016909 270 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVY 349 (380)
Q Consensus 270 ~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~vy 349 (380)
+|||++|++..||+++|++.|++++|||.+|+++|+++|+||++++++|+++++++|++++++|+++|.|+++++|+|||
T Consensus 262 ~gHs~~D~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te~e~~~i~~e~~~~v~~a~~~A~~~p~P~~~~~~~~vy 341 (362)
T PLN02269 262 HGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKEIRKEVDDAVAKAKESPMPDPSELFTNVY 341 (362)
T ss_pred CCcCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcc
Confidence 99999998789999999999974699999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 016909 350 DVS 352 (380)
Q Consensus 350 ~~~ 352 (380)
+++
T Consensus 342 ~~~ 344 (362)
T PLN02269 342 VKG 344 (362)
T ss_pred cCC
Confidence 965
|
|
| >CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-80 Score=604.69 Aligned_cols=320 Identities=27% Similarity=0.436 Sum_probs=309.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhHHHHHHHHhcCCCCcEEEccccchHHHHHcCCCHH
Q 016909 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQ 108 (380)
Q Consensus 30 ~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~ 108 (380)
.+.+|+++++++|+.|+++|.||+++.+++++|++ +|+|+++||||+++|++.+|+++|+++++||+|++++++|+++.
T Consensus 14 ~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~ 93 (341)
T CHL00149 14 ENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVPPK 93 (341)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCCCHH
Confidence 45799999999999999999999999999999999 69999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcC-------CCceeEEEeCccccCcch
Q 016909 109 EFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-------KDACAVTYFGDGGTSEGD 181 (380)
Q Consensus 109 ~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~-------~~~~vv~~~GDG~~~eG~ 181 (380)
++|++++|+.+|+|+|+++++|+.+++.++++.+|+||.++|+|+|+|+|.|+++ ++++|+|++|||++++|.
T Consensus 94 ~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G~ 173 (341)
T CHL00149 94 NVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQ 173 (341)
T ss_pred HHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhcH
Confidence 9999999999999999999999998888999999999999999999999999887 589999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEE
Q 016909 182 FHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPIL 261 (380)
Q Consensus 182 ~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~l 261 (380)
+||+||+|++|+||+||||+||+|+++++...++...++++++++||+++++|||+|+.+|++++++|++++|++++|+|
T Consensus 174 ~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~l 253 (341)
T CHL00149 174 FFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPTL 253 (341)
T ss_pred HHHHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEE
Confidence 99999999999999999999999999998877777789999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 016909 262 IEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPI 341 (380)
Q Consensus 262 Ie~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~ 341 (380)
||+.|||++|||++|+ ..||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++++|++++++|+++|.|++
T Consensus 254 Iev~tyR~~gHs~~D~-~~YR~~~e~~~~~-~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~ 331 (341)
T CHL00149 254 IEALTYRFRGHSLADP-DELRSKQEKEAWV-ARDPIKKLKSYIIDNELASQKELNKIQREVKIEIEQAVQFAISSPEPNI 331 (341)
T ss_pred EEEEEecCCCcCCCCC-ccCCCHHHHHHHh-cCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 9999999999999975 5799999999998 6999999999999999999999999999999999999999999999999
Q ss_pred CccccccccC
Q 016909 342 SDLFTDVYDV 351 (380)
Q Consensus 342 ~~~~~~vy~~ 351 (380)
+++|+|||++
T Consensus 332 ~~~~~~vy~~ 341 (341)
T CHL00149 332 SDLKKYLFAD 341 (341)
T ss_pred HHHHhhcccC
Confidence 9999999974
|
|
| >TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-79 Score=603.35 Aligned_cols=341 Identities=42% Similarity=0.679 Sum_probs=323.1
Q ss_pred CeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCCCCcEEEc
Q 016909 13 PCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVP 92 (380)
Q Consensus 13 ~~~~~~~~~g~~~~~~~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~~~D~v~~ 92 (380)
|.|||++.+|.+.++...+.+++++++++|++|+++|.||+++..++++|+++|+|+++||||+++|++.+|+++|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~vg~~~al~~~D~~~~ 80 (341)
T TIGR03181 1 ELVQVLDEDGNVVDPEPAPDLSDEELVELYRDMVLTRRFDTKALALQRQGRLGTYAPNLGQEAAQVGSALALRKDDWVFP 80 (341)
T ss_pred CceEEECCCCCcCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecccCCCChHHHHHHHHHHcCCCCEEEc
Confidence 67999999998766543457999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEe
Q 016909 93 QYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYF 172 (380)
Q Consensus 93 ~yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~ 172 (380)
+||+|++++++|+++.++|++++|+.+|. + .++..++++.++++|.++|.|+|+|+|.|+.+++++|+|++
T Consensus 81 ~yR~h~~~l~~G~~~~~~~ae~~g~~~g~--------~-~~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~ 151 (341)
T TIGR03181 81 SYRDHAAMLARGVPLVEILLYWRGDERGS--------W-DPEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYF 151 (341)
T ss_pred chhhHHHHHHcCCCHHHHHHHhcCcCcCC--------C-CchhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEe
Confidence 99999999999999999999999986542 1 13568999999999999999999999999999999999999
Q ss_pred CccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHH
Q 016909 173 GDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREM 252 (380)
Q Consensus 173 GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ 252 (380)
|||++++|.++|+||+|++|+||+||||+||+|+++++...+....++++++++||+++++|||+|+.+|+++++.|+++
T Consensus 152 GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ 231 (341)
T TIGR03181 152 GDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVER 231 (341)
T ss_pred cCCccccChHHHHHHHHhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988777767789999999999999999999999999999999999
Q ss_pred hhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 016909 253 AIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQE 332 (380)
Q Consensus 253 ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~~ 332 (380)
+|++++|+|||++|||++||+++|++..||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++++|++++++
T Consensus 232 a~~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~-~~Dpi~~~~~~L~~~g~~~~~e~~~i~~~~~~~v~~a~~~ 310 (341)
T TIGR03181 232 ARSGGGPTLIEAVTYRLGPHTTADDPTRYRTKEEEEEWR-KKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAE 310 (341)
T ss_pred HHcCCCCEEEEEEeecCCCCCCCCCCccCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998999999999998 5999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCccccccccCCCccHHHHHHHH
Q 016909 333 AEKAEKPPISDLFTDVYDVSPSNLREQEHSL 363 (380)
Q Consensus 333 a~~~~~p~~~~~~~~vy~~~~~~~~~~~~~l 363 (380)
|+++|.|+++++|+|||++.||++++|++.|
T Consensus 311 a~~~p~P~~~~~~~~vy~~~~~~~~~~~~~~ 341 (341)
T TIGR03181 311 ALALPPPPVDDIFDHVYAELPPELEEQRAEL 341 (341)
T ss_pred HHhCCCCCHHHHHhhcccCCCHHHHHHHHhC
Confidence 9999999999999999999999999998754
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. |
| >TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-79 Score=594.29 Aligned_cols=314 Identities=31% Similarity=0.541 Sum_probs=305.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhHHHHHHHHhcCCCCcEEEccccchHHHHHcCCCHHHHHHH
Q 016909 35 EGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQ 113 (380)
Q Consensus 35 ~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~l~e 113 (380)
+++++++|++|+++|.||+++.+++++|++ +|+|+++||||+++|++.+|+++||++++||+|+++|++|++++++|++
T Consensus 1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~ 80 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAE 80 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHH
Confidence 478999999999999999999999999999 5899999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcC
Q 016909 114 CFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE 193 (380)
Q Consensus 114 ~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~ 193 (380)
++|+++|+|+|+++++|+.++..++++.+|+||.++|+|+|+|+|.|+.+++++|+|++|||++++|.+||+||+|++++
T Consensus 81 ~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~ 160 (315)
T TIGR03182 81 LTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWK 160 (315)
T ss_pred HcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCC
Q 016909 194 APVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 273 (380)
Q Consensus 194 Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 273 (380)
||+||||.||+|+++++...+.+.+++++++++||+++++|||+|+.+|++++++|++++|++++|+|||+.|||++|||
T Consensus 161 lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 240 (315)
T TIGR03182 161 LPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHS 240 (315)
T ss_pred cCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCC
Confidence 99999999999999999887777889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccccc
Q 016909 274 TSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYD 350 (380)
Q Consensus 274 ~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~ 350 (380)
++|++ .||+++|++.|+ ++|||.+|+++|+++|+||++++++|+++++++|+++++.|++.|.|+++++|+|||+
T Consensus 241 ~~D~~-~Yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~ 315 (315)
T TIGR03182 241 MSDPA-KYRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEEAVEFAENSPEPPVEELYTDVYA 315 (315)
T ss_pred CCCcc-ccCCHHHHHHHH-hcCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhccC
Confidence 99876 799999999998 6999999999999999999999999999999999999999999999999999999995
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. |
| >PLN02374 pyruvate dehydrogenase (acetyl-transferring) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-77 Score=601.68 Aligned_cols=322 Identities=26% Similarity=0.439 Sum_probs=310.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhHHHHHHHHhcCCCCcEEEccccchHHHHHcCCCHH
Q 016909 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQ 108 (380)
Q Consensus 30 ~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~ 108 (380)
.+.+++++++++|++|+++|.||+++.+++++|++ +|+|+++||||+++|++.+|+++||++++||+|+++|++|++++
T Consensus 80 ~~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~~~~ 159 (433)
T PLN02374 80 DLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPAR 159 (433)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCCCHH
Confidence 45899999999999999999999999999999999 79999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcC-------CCceeEEEeCccccCcch
Q 016909 109 EFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-------KDACAVTYFGDGGTSEGD 181 (380)
Q Consensus 109 ~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~-------~~~~vv~~~GDG~~~eG~ 181 (380)
++|+|++|+.+|+|+|+++++|+.+++.++.+.+++||.++|+|+|+|+|.|+++ ++++|+|++|||++++|.
T Consensus 160 ~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~ 239 (433)
T PLN02374 160 AVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQ 239 (433)
T ss_pred HHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccCh
Confidence 9999999999999999999999999899999999999999999999999999875 488999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEE
Q 016909 182 FHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPIL 261 (380)
Q Consensus 182 ~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~l 261 (380)
|||+||+|++|+|||||||+||+|+++++...++..+++++++++||+++++|||+|+.+|++++++|++++|++++|+|
T Consensus 240 f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~L 319 (433)
T PLN02374 240 FFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTL 319 (433)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999998888777789999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 016909 262 IEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPI 341 (380)
Q Consensus 262 Ie~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~ 341 (380)
||+.|||++|||++|++ .||+++|++.|+ ++|||.+++++|+++|++|++++++|+++++++|++++++|+++|.|++
T Consensus 320 Ie~~tyR~~GHs~~D~~-~YR~~~e~~~~~-~~DPi~~~~~~L~~~gi~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~ 397 (433)
T PLN02374 320 VECETYRFRGHSLADPD-ELRDPAEKAHYA-ARDPIAALKKYLIENGLATEAELKAIEKKIDEVVEDAVEFADASPLPPR 397 (433)
T ss_pred EEEEEEecCCcCCCCcc-ccCCHHHHHHHH-cCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999865 699999999998 6999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCC
Q 016909 342 SDLFTDVYDVSP 353 (380)
Q Consensus 342 ~~~~~~vy~~~~ 353 (380)
+++|++||+++.
T Consensus 398 ~~~~~~vy~~~~ 409 (433)
T PLN02374 398 SQLLENVFADPK 409 (433)
T ss_pred HHHHhccccCCc
Confidence 999999999763
|
|
| >KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-78 Score=567.64 Aligned_cols=320 Identities=31% Similarity=0.505 Sum_probs=310.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhHHHHHHHHhcCCCCcEEEccccchHHHHHcCCCHH
Q 016909 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQ 108 (380)
Q Consensus 30 ~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~ 108 (380)
...+++++++++|++|+++|.+|..+-.+|++++| +|+|++.||||+++|+-.+|.+.|.++++||+|++.+.+|.++.
T Consensus 53 s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~~ 132 (394)
T KOG0225|consen 53 SVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSVR 132 (394)
T ss_pred eEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHHHHHHhccCCCceEEEeeeeeEEeecCccHH
Confidence 45689999999999999999999999999999999 79999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHH
Q 016909 109 EFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNF 188 (380)
Q Consensus 109 ~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~ 188 (380)
++|+|++|+.+|+|+|.+++||+..+ +|++.+|++|.|+|.++|+|+|.|+++.+.+++++.|||+.+||.++|++|+
T Consensus 133 ~v~aEL~Gr~~Gc~kGKGGSMHmy~k--~FyGGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NM 210 (394)
T KOG0225|consen 133 EVLAELMGRQAGCSKGKGGSMHMYAK--NFYGGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNM 210 (394)
T ss_pred HHHHHHhccccccccCCCcceeeecc--cccCccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhH
Confidence 99999999999999999999999864 5999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 189 SAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 189 A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
|++|+||+||||+||.|++.|+..+....+++.+|. .| +|++.|||+|+.+|.+|.+.|++++++++||+++|+.|||
T Consensus 211 A~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYR 288 (394)
T KOG0225|consen 211 AALWKLPVIFVCENNHYGMGTSAERASASTEYYKRG-DY-IPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYR 288 (394)
T ss_pred HHHhCCCEEEEEccCCCccCcchhhhhcChHHHhcc-CC-CCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeee
Confidence 999999999999999999999999999899999999 45 9999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccc
Q 016909 269 VGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDV 348 (380)
Q Consensus 269 ~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~v 348 (380)
++|||.+|+.+.||+.||++..+.++|||..++++|++.++.|++|+++|+++++++|++++++|+++|.|++++|+.||
T Consensus 289 y~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~~late~ELKai~k~irkeVdeav~~A~~~p~p~~~eL~~dv 368 (394)
T KOG0225|consen 289 YHGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIELGLATEEELKAIDKEIRKEVDEAVAFATASPEPEPSELFTDV 368 (394)
T ss_pred ecccccCCCCcccchHHHHHHHHhccChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHh
Confidence 99999999879999999999998789999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 016909 349 YDVSP 353 (380)
Q Consensus 349 y~~~~ 353 (380)
|...+
T Consensus 369 y~~~~ 373 (394)
T KOG0225|consen 369 YVKGT 373 (394)
T ss_pred hccCC
Confidence 99764
|
|
| >PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-74 Score=555.32 Aligned_cols=300 Identities=39% Similarity=0.654 Sum_probs=274.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCCCCcEEEccccchHHHHHcCCCHHHHHHHhhcCCCCC
Q 016909 42 YNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADY 121 (380)
Q Consensus 42 y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~l~e~~g~~~~~ 121 (380)
|+.|+..|..|.++..+.++|+.+|+|++.||||++++++.+|+++||++++||+|+++|++|+++.++|++++|+..+.
T Consensus 1 y~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~ 80 (300)
T PF00676_consen 1 YRMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKGH 80 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTST
T ss_pred CchHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccCC
Confidence 67777777777777777788888999999999999999999999999999999999999999999999999999999776
Q ss_pred CCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEE
Q 016909 122 GKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 201 (380)
Q Consensus 122 ~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~ 201 (380)
+.|+. +.|+..+..++++.++++|.++|+|+|+|+|.|+++.+.+++|++|||+++||.|||+||+|++|+|||||||+
T Consensus 81 ~g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvve 159 (300)
T PF00676_consen 81 GGGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVE 159 (300)
T ss_dssp TTTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CCCcc-ccccccccceeeeccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEe
Confidence 66666 68887777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCC
Q 016909 202 NNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKY 281 (380)
Q Consensus 202 NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Y 281 (380)
||+|+|+|+...+++..+++++|++||+|+++|||+|+.+|++++++|++++|+++||+|||++|||++|||++|||..|
T Consensus 160 NN~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~y 239 (300)
T PF00676_consen 160 NNQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSESDDPTFY 239 (300)
T ss_dssp EESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSCGGGT
T ss_pred cCCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 016909 282 RPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPIS 342 (380)
Q Consensus 282 r~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~ 342 (380)
|+++|++.|++.+|||.+++++|+++|++|++++++|+++++++|++++++|+++|.|+||
T Consensus 240 r~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~e 300 (300)
T PF00676_consen 240 RSPEEYEEWWKKRDPIKRFRRYLIEEGVLTEEELDAIEAEIKAEVEEAVEFAEASPEPDPE 300 (300)
T ss_dssp SHHHHHHHHHHCT-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHSHBC-G-
T ss_pred CCHHHHHHHHhcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 9999998887667999999999999999999999999999999999999999999999986
|
Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A .... |
| >cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-72 Score=542.69 Aligned_cols=292 Identities=42% Similarity=0.733 Sum_probs=284.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcc-cccccchhHHHHHHHHhcCCCCcEEEccccchHHHHHcCCCHHHHHHHhhcCCC
Q 016909 41 MYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKA 119 (380)
Q Consensus 41 ~y~~M~~~R~~e~~~~~~~~~g~i~-~~~~~~GqEa~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~l~e~~g~~~ 119 (380)
+|++|+++|.||+++.++++||++. |+|++.||||+++|++.+|+++|+++++||+|++++++|+++.++|++++|+.+
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~ 80 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET 80 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCC
Confidence 5999999999999999999999997 599999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEE
Q 016909 120 DYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI 199 (380)
Q Consensus 120 ~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~v 199 (380)
|+++|+++++|+.++..++++.+|+||+++|+|+|+|+|.|+.+++++|||++|||++++|.++|+||+|++++||+|||
T Consensus 81 g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~v 160 (293)
T cd02000 81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFV 160 (293)
T ss_pred CCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCC
Q 016909 200 CRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDST 279 (380)
Q Consensus 200 v~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~ 279 (380)
|+||+|+++++...+.+.+++++++++||+++++|||+|++++++++++|++++|++++|+|||+.|||.+|||++|||.
T Consensus 161 v~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~~dd~~ 240 (293)
T cd02000 161 CENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPS 240 (293)
T ss_pred EeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCCCCCCCcc
Confidence 99999999998877777789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016909 280 KYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEA 333 (380)
Q Consensus 280 ~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~~a 333 (380)
.||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++++|++++++|
T Consensus 241 ~Yr~~~e~~~~~-~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a 293 (293)
T cd02000 241 RYRTKEEVEEWK-KRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEFA 293 (293)
T ss_pred cCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999998 69999999999999999999999999999999999998864
|
PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). |
| >PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-60 Score=511.72 Aligned_cols=340 Identities=14% Similarity=0.151 Sum_probs=296.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHh------cCCCCcEEEc-cccchHHHHH--
Q 016909 32 KVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAA------AIKNDDFVVP-QYREPGVLLW-- 102 (380)
Q Consensus 32 ~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~------~l~~~D~v~~-~yR~~~~~l~-- 102 (380)
.+++++++++|+.|+++|.||+++.++|..+|. | ++.|||++.+++.. +++++|++++ +||||+++|+
T Consensus 185 ~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Kr-f--~~eG~Ea~i~gl~~li~~a~~lg~~D~vigmaHRgrlnvLa~v 261 (924)
T PRK09404 185 SFSAEEKKAILERLTAAEGFERFLHTKFVGQKR-F--SLEGGESLIPMLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVNV 261 (924)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-c--cccchhhHHHHHHHHHHHHHhCCCCCEEEecCcCchHHHHHHh
Confidence 789999999999999999999999999988874 3 68999999999988 6668999999 5999999999
Q ss_pred cCCCHHHHHHHhhcCC--CCCCCCCCCccccCCCC-----C-----CcccccccccCccHHHHHHHHHhhhcCCC-----
Q 016909 103 RGFSMQEFANQCFGNK--ADYGKGRQMPIHYGSNK-----H-----NYFTVSSTIATQLPHAVGAAYALKMDRKD----- 165 (380)
Q Consensus 103 ~G~~~~~~l~e~~g~~--~~~~~G~~~~~H~~~~~-----~-----~~~~~~g~lG~~~p~AvG~A~A~k~~~~~----- 165 (380)
+|++++++|+|++|+. ++.+.++...+|++... - ....+.+++|.+.|+|+|+|+|.|+++.+
T Consensus 262 ~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~npShleav~Pva~G~A~A~q~~~~~~~~~~ 341 (924)
T PRK09404 262 LGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDGQDRK 341 (924)
T ss_pred cCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccCCccccccccCeehhHHHHHHHhcCCccccc
Confidence 5999999999999987 33222333444444321 0 11224689999999999999999998877
Q ss_pred -ceeEEEeCcccc-CcchHHHHHHHHHHcCCC---EEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHH
Q 016909 166 -ACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240 (380)
Q Consensus 166 -~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lp---vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~ 240 (380)
.++||++|||++ +||.|||+||+|++|++| +||||+||+|+++|+...+.+...++++|++||+|+++|||+|++
T Consensus 342 ~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s~~~~sd~Ak~~giP~~~VDG~D~~ 421 (924)
T PRK09404 342 KVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAKMVQAPIFHVNGDDPE 421 (924)
T ss_pred ceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhccchhHHHHHeecCCcEEEEcCCCHH
Confidence 799999999998 799999999999999997 999999999999999988887888999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHH
Q 016909 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRS 320 (380)
Q Consensus 241 av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~ 320 (380)
+|+.+++.|++++|+++||+|||++|||++|||++|+| .||+++|++.|++.+||+.+|+++|+++|++|++++++|++
T Consensus 422 AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p-~yr~p~ey~~~~~~~dpi~~~~~~Li~~G~lt~~e~~~i~~ 500 (924)
T PRK09404 422 AVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEP-SFTQPLMYKKIKKHPTTRELYADKLVAEGVITEEEADEMVN 500 (924)
T ss_pred HHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCC-cCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999987 49999999999766899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccccccccCC----------CccHHHHHHHHHHHHHhCCCCCCCCC
Q 016909 321 SVRKQILHALQEAEKAEKPPISDLFTDVYDVS----------PSNLREQEHSLRETIKKHPQDYPSNV 378 (380)
Q Consensus 321 ~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~~----------~~~~~~~~~~l~~~~~~~p~~~~~~~ 378 (380)
+++++|++|+++|++. .+.+.+..+|... +....+.++.+.+.+..-|++|++|.
T Consensus 501 ~~~~~v~~a~~~A~~~---~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~~~~~~~~~P~~f~~h~ 565 (924)
T PRK09404 501 EYRDALDAGFEVVKEW---RPADWLAGDWSPYLGHEWDDPVDTGVPLERLKELAEKLTTVPEGFKVHP 565 (924)
T ss_pred HHHHHHHHHHHHHHhc---CcccccccccccccccccccccCCCCCHHHHHHHHHHhccCCCCCcccH
Confidence 9999999999999986 3556666666511 11233457778888899999999875
|
|
| >TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-55 Score=466.70 Aligned_cols=344 Identities=15% Similarity=0.134 Sum_probs=297.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhc------CCCCcEEEcc-ccchHHHHH-
Q 016909 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAA------IKNDDFVVPQ-YREPGVLLW- 102 (380)
Q Consensus 31 ~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~------l~~~D~v~~~-yR~~~~~l~- 102 (380)
..+++++.+++++.|+++..||+++.++|..-| +| +..|-|++..++-.. .+.+|+++++ |||+.+.|+
T Consensus 184 ~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~K-RF--slEG~eslip~l~~~i~~~~~~gv~d~v~gmaHRGRlnvL~n 260 (929)
T TIGR00239 184 AQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAK-RF--SLEGLDALVPMLKEIIRHSVNSGTRDVVLGMAHRGRLNVLVN 260 (929)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-ee--ecccHHHHHHHHHHHHHHHHHcCCCeEEeccccCCcHHHHHH
Confidence 478999999999999999999999999885322 33 557888887765543 4578999998 999999999
Q ss_pred -cCCCHHHHHHHhhcCCCC-CCCCCCCc-cccCC-----------CCCCcccccccccCccHHHHHHHHHhhhcCC----
Q 016909 103 -RGFSMQEFANQCFGNKAD-YGKGRQMP-IHYGS-----------NKHNYFTVSSTIATQLPHAVGAAYALKMDRK---- 164 (380)
Q Consensus 103 -~G~~~~~~l~e~~g~~~~-~~~G~~~~-~H~~~-----------~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~---- 164 (380)
+|.+++++|+++.|+..+ .+.|++.. +|++. ....+.+++++|+.+.|+|+|.|+|.|+++.
T Consensus 261 v~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~~l~~npSHLeav~Pva~G~ArA~q~~~~~~~~ 340 (929)
T TIGR00239 261 VLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSPVVIGSTRARLDRLNDSPE 340 (929)
T ss_pred HhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCcceeeecCCCcccccccchhhhHHHHHHHhcCCccc
Confidence 999999999999998766 34467655 88884 2356788999999999999999999998765
Q ss_pred --CceeEEEeCcccc-CcchHHHHHHHHHHcCCCE---EEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCC
Q 016909 165 --DACAVTYFGDGGT-SEGDFHAALNFSAVTEAPV---IFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGND 238 (380)
Q Consensus 165 --~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpv---i~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D 238 (380)
+.++||++|||++ +||.|||+||+|+.|++|+ ||||+||+|+++|+...+.+...++++|++||+|+++|||+|
T Consensus 341 ~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~~sd~Ak~ygiP~~~VDG~D 420 (929)
T TIGR00239 341 STKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLAKMIQAPIFHVNADD 420 (929)
T ss_pred ccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccCHHHHheecCCCEEEECCCC
Confidence 5789999999997 8999999999999999996 999999999999988888777789999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHH
Q 016909 239 ALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESEL 318 (380)
Q Consensus 239 ~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i 318 (380)
+++|+.+++.|++++|+++||+|||++|||++|||++|+|..||+ ++++.|++.+||+.+|+++|+++|++|++++++|
T Consensus 421 ~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp-~~~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~~i 499 (929)
T TIGR00239 421 PEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQP-LMYQKIKKHPTPRKVYADKLVSEGVATEEDVTEM 499 (929)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCH-HHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999988998 7788887568999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCC--c---cccccccC--CCccHHHHHHHHHHHHHhCCCCCCCCC
Q 016909 319 RSSVRKQILHALQEAEKAEKPPIS--D---LFTDVYDV--SPSNLREQEHSLRETIKKHPQDYPSNV 378 (380)
Q Consensus 319 ~~~~~~~v~~a~~~a~~~~~p~~~--~---~~~~vy~~--~~~~~~~~~~~l~~~~~~~p~~~~~~~ 378 (380)
+++++++|++|++.++..+.|.+. . +..+.+.. .+....+.+..|.+.+...|+.|++|.
T Consensus 500 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~l~~~~~~~P~~f~~h~ 566 (929)
T TIGR00239 500 VNLYRDALEAADCVVPSWREMNTASFTWSPELNHEWDEEYPNKVEMKRLQELAKRISEVPEGVEMHS 566 (929)
T ss_pred HHHHHHHHHHHHHhhhccCCccccccccccccccccccCCCCCCCHHHHHHHHHHhccCCCCccccH
Confidence 999999999999999886655433 1 22221111 233445778899999999999998874
|
The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase. |
| >cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=372.72 Aligned_cols=230 Identities=19% Similarity=0.223 Sum_probs=208.9
Q ss_pred HHHHHHHHHhcCCcccccccchhHHHHHHHHhcCCC------CcEEEcc-ccchHHHHH--cCCCHHHHHHHhhcCCC--
Q 016909 51 MDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKN------DDFVVPQ-YREPGVLLW--RGFSMQEFANQCFGNKA-- 119 (380)
Q Consensus 51 ~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~~------~D~v~~~-yR~~~~~l~--~G~~~~~~l~e~~g~~~-- 119 (380)
||+++.++|..-+ +| +..|+|++++++...+++ +|+++++ |||+.++|+ +|++++++|+|+.|+.+
T Consensus 1 ~e~f~~~~f~~~k-rf--s~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~ 77 (265)
T cd02016 1 FEQFLATKFPGQK-RF--GLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFP 77 (265)
T ss_pred ChhhHHHhcCCCe-EE--EecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCC
Confidence 5778887775322 23 589999999999999986 7999998 999999999 99999999999999887
Q ss_pred -CCCCCCCCccccCCCC-----------CCcccccccccCccHHHHHHHHHhhhcC-----CCceeEEEeCcccc-Ccch
Q 016909 120 -DYGKGRQMPIHYGSNK-----------HNYFTVSSTIATQLPHAVGAAYALKMDR-----KDACAVTYFGDGGT-SEGD 181 (380)
Q Consensus 120 -~~~~G~~~~~H~~~~~-----------~~~~~~~g~lG~~~p~AvG~A~A~k~~~-----~~~~vv~~~GDG~~-~eG~ 181 (380)
+.+.|+++++|++... ..+.+++++||.++|+|+|+|+|.|+++ .+.++||++|||++ +||.
T Consensus 78 ~~~~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~ 157 (265)
T cd02016 78 EDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGV 157 (265)
T ss_pred CCCCCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCCh
Confidence 5556888999998654 5678899999999999999999999987 47899999999996 7999
Q ss_pred HHHHHHHHHHcCCC---EEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCC
Q 016909 182 FHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGR 258 (380)
Q Consensus 182 ~~Eal~~A~~~~Lp---vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~g 258 (380)
|||+||+|++|++| +||||+||+|+++|+.+.+++..+++++|++||+|+++|||+|+++|+++++.|++++|+++|
T Consensus 158 ~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~g 237 (265)
T cd02016 158 VYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKK 237 (265)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999998 999999999999999998888889999999999999999999999999999999999999999
Q ss_pred cEEEEEEeecCCCCCCCCCCCCCCCh
Q 016909 259 PILIEALTYRVGHHTTSDDSTKYRPV 284 (380)
Q Consensus 259 P~lIe~~t~R~~gHs~~Dd~~~Yr~~ 284 (380)
|+|||++|||++|||++|+| .|+++
T Consensus 238 p~lIe~~tYR~~GHse~D~p-~~t~p 262 (265)
T cd02016 238 DVVIDLVCYRRHGHNELDEP-SFTQP 262 (265)
T ss_pred CEEEEEEEecCCCCCCcCCc-cccCC
Confidence 99999999999999999987 45554
|
OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle. |
| >PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=311.20 Aligned_cols=344 Identities=17% Similarity=0.166 Sum_probs=279.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcccccccchhHHHHHHHHhcCC------CCcEEEcc-ccchHHHH
Q 016909 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR-QGRISFYLTTSGEEAINIASAAAIK------NDDFVVPQ-YREPGVLL 101 (380)
Q Consensus 30 ~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~-~g~i~~~~~~~GqEa~~~~~~~~l~------~~D~v~~~-yR~~~~~l 101 (380)
..+++.++.+.+++.+-.+..||.++..+|- |++ | +..|-|.+...+-..|. -+.+++++ |||+.+.|
T Consensus 487 ~~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqkR--F--slEG~Es~iplld~~~~~aa~~~l~evvigm~HRGRLNVL 562 (1228)
T PRK12270 487 HEKPTREEQKRILSKLNAAEAFETFLQTKYVGQKR--F--SLEGGESLIPLLDAVLDQAAEHGLDEVVIGMAHRGRLNVL 562 (1228)
T ss_pred CCCCCHHHHHHHHHHhhhHHHHHHHHhhhccccee--e--eecchhhHHHHHHHHHHHHHhcCCceEEecccccchHHHH
Confidence 4678999999999999999999999988773 443 3 45777887766655553 36888886 99999998
Q ss_pred H--cCCCHHHHHHHhhcCCCCC-CCCCC-CccccCCC-----------CCCcccccccccCccHHHHHHHHHhhhcC---
Q 016909 102 W--RGFSMQEFANQCFGNKADY-GKGRQ-MPIHYGSN-----------KHNYFTVSSTIATQLPHAVGAAYALKMDR--- 163 (380)
Q Consensus 102 ~--~G~~~~~~l~e~~g~~~~~-~~G~~-~~~H~~~~-----------~~~~~~~~g~lG~~~p~AvG~A~A~k~~~--- 163 (380)
+ .|.+..++|.||-|+.+.. ..|+| ..+|++.. +..+..+.++|...-|+.-|++.|.+..-
T Consensus 563 ani~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPSHLEavdpVleGivRakQd~l~~g 642 (1228)
T PRK12270 563 ANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSHLEAVDPVLEGIVRAKQDRLDKG 642 (1228)
T ss_pred HHHhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeeccCCCeeEEEEecCchhhhhcchHhhhhhhhhhhhhccc
Confidence 7 7999999999999987643 35655 67777642 12345678999999999999999987532
Q ss_pred C---CceeEEEeCcccc-CcchHHHHHHHHHHcCCC---EEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeC
Q 016909 164 K---DACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 236 (380)
Q Consensus 164 ~---~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lp---vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG 236 (380)
. ....|+++||++| +||.++|+||+|..+++| +||||.||+++++|......+.....++++++++|+++|||
T Consensus 643 ~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~~Rss~y~td~ak~~~~PifhVNG 722 (1228)
T PRK12270 643 EEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVAKMIQAPIFHVNG 722 (1228)
T ss_pred ccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccccccchhhHHHHhhcCCCEEeECC
Confidence 1 3478999999997 899999999999999998 99999999999999988777777778999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHH
Q 016909 237 NDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIES 316 (380)
Q Consensus 237 ~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~ 316 (380)
+|+++|..+.+.|+++++++++|++|++.|||.+||+++|||+ +.++..++...+++..-+.|.+.|+.+|.+|++|.+
T Consensus 723 dDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPS-mtqP~mY~~i~~~~svrk~yte~Ligrgdit~ee~e 801 (1228)
T PRK12270 723 DDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPS-MTQPLMYDLIDAKRSVRKLYTEALIGRGDITVEEAE 801 (1228)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcc-cCCchhhhhhhhcchHHHHHHHHHhhcCCCCHHHHH
Confidence 9999999999999999999999999999999999999999986 455556665554445556899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCC---ccc-cccccC--CCccHHHHHHHHHHHHHhCCCCCCCCC
Q 016909 317 ELRSSVRKQILHALQEAEKAEKPPIS---DLF-TDVYDV--SPSNLREQEHSLRETIKKHPQDYPSNV 378 (380)
Q Consensus 317 ~i~~~~~~~v~~a~~~a~~~~~p~~~---~~~-~~vy~~--~~~~~~~~~~~l~~~~~~~p~~~~~~~ 378 (380)
++..+++++++.++...++....+++ ... +..... .+....+.++.+.+.....||.|.+|.
T Consensus 802 ~~l~dy~~~Le~~f~e~re~~~~~~~~~~~~~~~~~~~~~~~Tav~~~~l~~i~da~~~~PegFt~Hp 869 (1228)
T PRK12270 802 QALRDYQGQLERVFNEVREAEKKPPEPPESVESDQGPPAGVDTAVSAEVLERIGDAHVNLPEGFTVHP 869 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCCccccccCCCCCCCCCCHHHHHHHHHHhccCCCCCccCh
Confidence 99999999999999988765433222 111 111110 123346788999999999999999884
|
|
| >PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=297.27 Aligned_cols=223 Identities=17% Similarity=0.166 Sum_probs=185.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhHHHHHHHHhcCC---CCcEEE--ccccchHHHHH
Q 016909 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIK---NDDFVV--PQYREPGVLLW 102 (380)
Q Consensus 29 ~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~~~~~~~l~---~~D~v~--~~yR~~~~~l~ 102 (380)
+.+.|+.++|..+-..+ |.+ ..+..+++ +++++++|+ +.++++.++. +.|+++ +.||+|++.++
T Consensus 11 d~~~l~~~~l~~l~~~i---r~~-----~~~~~~~~~Gh~~~~lg~--vel~~al~~~f~~~~D~ii~d~ghr~~~~~l~ 80 (581)
T PRK12315 11 DLKKLSLDELEQLASEI---RTA-----LLEKDSAHGGHVGPNLGV--VELTIALHYVFNSPKDKIVWDVSHQSYPHKML 80 (581)
T ss_pred HHhhCCHHHHHHHHHHH---HHH-----HHHHHHhcCCCcCcchhH--HHHHHHHHhhcCCCCCcEEEecCCchHHHHHH
Confidence 45677777665554332 333 22334555 599999999 5566666776 899999 89999999999
Q ss_pred cCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchH
Q 016909 103 RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF 182 (380)
Q Consensus 103 ~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~ 182 (380)
+|.++..++.+++|+.+|++++.+ +.|.. ..+|+.|+++|+|+|+|+|.|+++.+.+|||++|||++++|.+
T Consensus 81 ~G~~~~~~~~~~~g~~~G~~~~~~-s~~~~-------~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~ 152 (581)
T PRK12315 81 TGRKEAFLDPDHYDDVTGYTNPEE-SEHDF-------FTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLA 152 (581)
T ss_pred cCCccchhhHHHcCCCCCCCCCCC-CCCCC-------cCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchH
Confidence 999999999999999999888766 22321 3568899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEEcCCcceeeeccc---------ccCCcCHHHHHhhcCeeEEEE-eCCCHHHHHHHHHHHHHH
Q 016909 183 HAALNFSAVTEAPVIFICRNNGWAISTPISD---------QFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREM 252 (380)
Q Consensus 183 ~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~---------~~~~~~~~~~a~a~G~~~~~V-dG~D~~av~~a~~~A~~~ 252 (380)
||+||+|+.|++|+||||+||+|++++++.. .....++.+++++|||+++.| ||||+.++++++++|.
T Consensus 153 ~EAln~A~~~k~~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~-- 230 (581)
T PRK12315 153 LEGLNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVK-- 230 (581)
T ss_pred HHHHHHHHhhCCCEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHH--
Confidence 9999999999999999999999999987742 223445678999999999998 9999999999999865
Q ss_pred hhccCCcEEEEEEeecCCCCC
Q 016909 253 AIGEGRPILIEALTYRVGHHT 273 (380)
Q Consensus 253 ar~~~gP~lIe~~t~R~~gHs 273 (380)
++++|++|+++|+|..|..
T Consensus 231 --~~~gP~~i~~~T~kG~G~~ 249 (581)
T PRK12315 231 --DIDHPIVLHIHTLKGKGYQ 249 (581)
T ss_pred --hCCCCEEEEEEeecCCCCC
Confidence 3689999999999999853
|
|
| >COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=242.27 Aligned_cols=218 Identities=19% Similarity=0.213 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchh-HHHHHHHHhcCC---------CCcEEEccccch------HHHH
Q 016909 38 AIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGE-EAINIASAAAIK---------NDDFVVPQYREP------GVLL 101 (380)
Q Consensus 38 l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~Gq-Ea~~~~~~~~l~---------~~D~v~~~yR~~------~~~l 101 (380)
..++-+....+|.---++.....+|.++ .+... |..++.....|+ ..|+++.+ .|| +.+.
T Consensus 7 ~~~L~~~A~~iRr~~v~m~~~~~~GH~G---~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLS-KGHaa~AlYa~La 82 (243)
T COG3959 7 VDELERIAREIRRNIVRMLANAGSGHVG---GSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILS-KGHAAPALYATLA 82 (243)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCcC---ccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEe-cccchHHHHHHHH
Confidence 3444555566676655555444555432 23322 444444444443 34777776 455 2445
Q ss_pred HcCCCHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcc
Q 016909 102 WRGFSMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180 (380)
Q Consensus 102 ~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG 180 (380)
.+|+.+++-+..+.. .|+.+++|+.. ..+++..++|+||+|+++|+|+|++.|+++.+..|++++|||+++||
T Consensus 83 e~G~~p~eeL~~~~~------~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG 156 (243)
T COG3959 83 EKGYFPEEELETFRR------IGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEG 156 (243)
T ss_pred HcCCCCHHHHHHhcc------CCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccc
Confidence 689988888886653 48889999987 56789999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCc
Q 016909 181 DFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRP 259 (380)
Q Consensus 181 ~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP 259 (380)
.+|||+.+|++|+| ++|.||+-|..++++.+++..+..++.+++++|||++++|||||++++.+|+.++... .++|
T Consensus 157 ~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~---~~rP 233 (243)
T COG3959 157 QVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGS---KGRP 233 (243)
T ss_pred cHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhcc---CCCC
Confidence 99999999999999 8999999999999999999999999999999999999999999999999999887642 4499
Q ss_pred EEEEEEeec
Q 016909 260 ILIEALTYR 268 (380)
Q Consensus 260 ~lIe~~t~R 268 (380)
.+|.++|.+
T Consensus 234 ~~IIa~Tvk 242 (243)
T COG3959 234 TVIIAKTVK 242 (243)
T ss_pred eEEEEeccc
Confidence 999999865
|
|
| >KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=254.59 Aligned_cols=345 Identities=13% Similarity=0.134 Sum_probs=282.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcC------CCCcEEEcc-ccchHHHH
Q 016909 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAI------KNDDFVVPQ-YREPGVLL 101 (380)
Q Consensus 29 ~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l------~~~D~v~~~-yR~~~~~l 101 (380)
....++.|+.+-+|..++++-.||+++...+..-| +| ...|.|++..|+-..+ +.+++|+++ |||+...|
T Consensus 242 ~~~q~s~e~k~~il~RL~~st~FE~FLa~Kw~seK-RF--GLEGcE~lIP~mK~iiDrS~elGVe~iviGMpHRGRLNvL 318 (1017)
T KOG0450|consen 242 GPMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEK-RF--GLEGCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRLNVL 318 (1017)
T ss_pred CccccCHHHHHHHHHHHHHhhHHHHHHhhhCCccc-cc--cccchhhhhhHHHHHhhhhhhcCchheEecCCccchhHHH
Confidence 35678999999999999999999999998886443 23 3478898888876544 568999996 99999888
Q ss_pred H--cCCCHHHHHHHhhcCCCCCCCCCC-CccccCCC----C--------CCcccccccccCccHHHHHHHHHhhhcC---
Q 016909 102 W--RGFSMQEFANQCFGNKADYGKGRQ-MPIHYGSN----K--------HNYFTVSSTIATQLPHAVGAAYALKMDR--- 163 (380)
Q Consensus 102 ~--~G~~~~~~l~e~~g~~~~~~~G~~-~~~H~~~~----~--------~~~~~~~g~lG~~~p~AvG~A~A~k~~~--- 163 (380)
+ .-.+++++|++|.|. .....|+| ..+|++.. . ..+..+.++|.+.-|+.+|...|.++..
T Consensus 319 ~NVvRKpl~qIfseF~g~-~~~DeGSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~GKtrA~q~y~~D~ 397 (1017)
T KOG0450|consen 319 ANVVRKPLEQIFSEFSGL-EAADEGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMGKTRAEQFYTGDE 397 (1017)
T ss_pred HHHHhhHHHHHHHhccCC-CCCcCCCCceeeeeccccccccccCCceeEEEEecCchhhcccCceeechHHHHHHhcccc
Confidence 7 347899999999984 33333554 66776641 1 2356788999999999999999988753
Q ss_pred --CCceeEEEeCcccc-CcchHHHHHHHHHHcCC---CEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCC
Q 016909 164 --KDACAVTYFGDGGT-SEGDFHAALNFSAVTEA---PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 237 (380)
Q Consensus 164 --~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~L---pvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~ 237 (380)
.+...|.++||++| .||.++|.+.+...-+. ..|+||.|||++++|...-..+.+...+.|++.+.|.++|+++
T Consensus 398 ~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDvar~v~aPIFHVNaD 477 (1017)
T KOG0450|consen 398 EGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVARVVNAPIFHVNAD 477 (1017)
T ss_pred ccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcccccCCCCchhHHHHhCCCeEeecCC
Confidence 34578999999999 79999999998776443 5999999999999988777777777789999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHH
Q 016909 238 DALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESE 317 (380)
Q Consensus 238 D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~ 317 (380)
|+++|.-+++-|.+.....++.++|+++|||.+||++.|.| .+..+-.++.+++.+..+..|.+.|+++|.+|++++++
T Consensus 478 D~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP-~FTQPlMYk~I~k~~~~l~~Y~ekLl~egtvs~~evd~ 556 (1017)
T KOG0450|consen 478 DPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEP-MFTQPLMYKQIRKHKPVLQKYAEKLLSEGTVSQQEVDE 556 (1017)
T ss_pred ChHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcccCc-cccchHHHHHHHcCCcHHHHHHHHHHhcCcccHHHHHH
Confidence 99999999999999988999999999999999999999987 57888899999877788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCcccccc----ccC----------CCccHHHHHHHHHHHHHhCCCCCCCCC
Q 016909 318 LRSSVRKQILHALQEAEKAEKPPISDLFTDV----YDV----------SPSNLREQEHSLRETIKKHPQDYPSNV 378 (380)
Q Consensus 318 i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~v----y~~----------~~~~~~~~~~~l~~~~~~~p~~~~~~~ 378 (380)
+.+.+..-+++|++.++++..-...+-++.- +.+ .+....+.+..+...+-..|++|++|.
T Consensus 557 ~~~k~~~I~eeafe~sKd~~~~~~rdWL~spW~gF~spd~~~~i~~~~~Tgv~~e~L~~ig~~~ss~PE~F~~Hr 631 (1017)
T KOG0450|consen 557 EIKKYDNILEEAFERSKDYKPLHIRDWLDSPWPGFFSPDGQPKILPCPSTGVKEEILKHIGKVASSVPEGFKIHR 631 (1017)
T ss_pred HHHHHHHHHHHHHHhhccccchhhhhhhcCCCccccCccCCCccccCCCCCCCHHHHHHHHHhhccCCcccchhh
Confidence 9999999999999999876432212222222 221 122345678889999999999999875
|
|
| >KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-30 Score=252.64 Aligned_cols=341 Identities=16% Similarity=0.157 Sum_probs=265.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcC------CCCcEEEcc-ccchHHHHH-
Q 016909 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAI------KNDDFVVPQ-YREPGVLLW- 102 (380)
Q Consensus 31 ~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l------~~~D~v~~~-yR~~~~~l~- 102 (380)
..+.++++.++-+.|+++..||.++...|.+-| .| .+.|-|.+.+=....| +.+|+|+++ |||+..++.
T Consensus 152 e~l~keEr~~i~~Lmlksq~fD~FlatKFpTvK--RY-GgEGAESM~aFF~eLl~~sa~~~ie~viigmpHRGRlnLlt~ 228 (913)
T KOG0451|consen 152 EQLGKEERCEIAELMLKSQAFDNFLATKFPTVK--RY-GGEGAESMLAFFWELLRDSAQANIEHVIIGMPHRGRLNLLTA 228 (913)
T ss_pred HHhhHHHHHHHHHHHHhhhhHHHHHHhccchhh--hh-ccccHHHHHHHHHHHHHHHHhcCcceEEEeccccCcchHHHH
Confidence 358899999999999999999999988876432 11 2445555433222222 367999995 999988875
Q ss_pred -cCCCHHHHHHHhhcCCCCCCC---CCCCccccCCC--------C--CCcccccccccCccHHHHHHHHHhhhcC-----
Q 016909 103 -RGFSMQEFANQCFGNKADYGK---GRQMPIHYGSN--------K--HNYFTVSSTIATQLPHAVGAAYALKMDR----- 163 (380)
Q Consensus 103 -~G~~~~~~l~e~~g~~~~~~~---G~~~~~H~~~~--------~--~~~~~~~g~lG~~~p~AvG~A~A~k~~~----- 163 (380)
..+++..||..+.|.+..+.. -+..-+|+.+. + .-+.++.+++.+..|+|+|.+.+.+...
T Consensus 229 Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lhvtMlpNPSHLEAvNPVAmGKtR~rqqsr~~Gdy 308 (913)
T KOG0451|consen 229 LLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHVTMLPNPSHLEAVNPVAMGKTRSRQQSRGEGDY 308 (913)
T ss_pred HhcCCHHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhhcccCCceEEEecCChhhhhccCchhhcchhHHHHhhcCCCC
Confidence 789999999999998775421 12222343321 1 2356788999999999999999876431
Q ss_pred -C--------CceeEEEeCcccc-CcchHHHHHHHHHH--cCC-CEEEEEEcCCcceeeecccccCCcCHHHHHhhcCee
Q 016909 164 -K--------DACAVTYFGDGGT-SEGDFHAALNFSAV--TEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (380)
Q Consensus 164 -~--------~~~vv~~~GDG~~-~eG~~~Eal~~A~~--~~L-pvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~ 230 (380)
+ .-..+.++|||+| .||.++|+++++-. +++ ..|++|.||+.+.+++.+...+...-++++++++++
T Consensus 309 spd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rGRSs~ycsDiaK~~~~p 388 (913)
T KOG0451|consen 309 SPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRGRSSAYCSDIAKSIQAP 388 (913)
T ss_pred CCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccCcccccccchhhhHHHHHhCCC
Confidence 1 1256788999998 79999999999864 567 699999999999999999888777788999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHH-HHHHHHHHCCC
Q 016909 231 SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVT-RFRKWIESNGW 309 (380)
Q Consensus 231 ~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~-~~~~~L~~~g~ 309 (380)
+++|+|.|+++|.++.+-|+++.|+.++.++|++.|||.+||++.||| .|.++-.++..+ ++..++ .|.+.|+++|+
T Consensus 389 viHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp-~ftspvmyk~v~-aReSvPdlya~~L~~eg~ 466 (913)
T KOG0451|consen 389 VIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDP-TFTSPVMYKEVE-ARESVPDLYAQQLAKEGV 466 (913)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhccccccCc-cccChhHHHHHH-hhhcccHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999998 589999888886 466665 57999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccccccCC---C-----cc---HHHHHHHHHHHHHhCCCCCCCCC
Q 016909 310 WNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVS---P-----SN---LREQEHSLRETIKKHPQDYPSNV 378 (380)
Q Consensus 310 ~t~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~~---~-----~~---~~~~~~~l~~~~~~~p~~~~~~~ 378 (380)
+|++++++++++..+.+.+.++.+..+.+|+. -++.-|... | |. ...-+..+...-...|++|+.|+
T Consensus 467 ~tee~vkE~~~~y~~~Ln~eL~~~~~y~Pp~~--~~~~~W~gf~qapk~it~WdTGv~~dLLrfiG~~SV~vPedf~~H~ 544 (913)
T KOG0451|consen 467 LTEEKVKEMRDEYMKYLNEELALAPAYQPPPS--YFEKQWTGFQQAPKEITYWDTGVDYDLLRFIGQQSVTVPEDFNIHP 544 (913)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCCccCCCch--hhHHhhhhhccChhhhcccccCcchHHHHHhccCceecchhccccH
Confidence 99999999999999999999988887654432 233333221 1 11 11234455555577888888764
|
|
| >COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=258.42 Aligned_cols=342 Identities=14% Similarity=0.138 Sum_probs=278.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcccccccchhHHHHHHHHhcC------CCCcEEEcc-ccchHHHH
Q 016909 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR-QGRISFYLTTSGEEAINIASAAAI------KNDDFVVPQ-YREPGVLL 101 (380)
Q Consensus 30 ~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~-~g~i~~~~~~~GqEa~~~~~~~~l------~~~D~v~~~-yR~~~~~l 101 (380)
.+.++.|+.+.+|+.+..+..||+++...|. ++| | +..|-|+...++-..+ +..++|+++ |||+.+.|
T Consensus 169 ~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KR--F--slEG~eslip~l~~~i~~~~~~G~~~vviGMaHRGRLNvL 244 (906)
T COG0567 169 KPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKR--F--SLEGGESLIPMLDELIDRAGKQGVKEVVIGMAHRGRLNVL 244 (906)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCcc--c--cccchhhHHHHHHHHHHHHHhcCcceEEecccccchHHHH
Confidence 4578999999999999999999999988875 443 3 4578888877765544 467999996 99999888
Q ss_pred H--cCCCHHHHHHHhhcCCCCCCCCCCCccccCCC----------CCCcccccccccCccHHHHHHHHHhhhcCCC----
Q 016909 102 W--RGFSMQEFANQCFGNKADYGKGRQMPIHYGSN----------KHNYFTVSSTIATQLPHAVGAAYALKMDRKD---- 165 (380)
Q Consensus 102 ~--~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~----------~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~---- 165 (380)
. .|.+++.+|+||.|+......-+...+|++.. ...+..++++|....|+..|.+.|.+....+
T Consensus 245 ~nvlgKp~~~if~eF~g~~~~~~~sGDVKYH~G~~~~~~~~~~~v~l~La~NPSHLE~v~PVV~G~vRa~Qd~~~d~~~~ 324 (906)
T COG0567 245 VNVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVVEGSVRAKQDRLGDTERD 324 (906)
T ss_pred HHHhCCCHHHHHHHhCCCCCCCCcccccccccccccccccCCCeeEEEecCCcchhhhhchhhhcchHhhhhhhccCccc
Confidence 6 89999999999999754332233456665531 1234667899999999999999998765322
Q ss_pred -ceeEEEeCcccc-CcchHHHHHHHHHHc--CC-CEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHH
Q 016909 166 -ACAVTYFGDGGT-SEGDFHAALNFSAVT--EA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240 (380)
Q Consensus 166 -~~vv~~~GDG~~-~eG~~~Eal~~A~~~--~L-pvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~ 240 (380)
...+.++||.++ +||.+.|.||+...- .. +.|+||.||+.+.+|......+.+...+.|+.++.|+++|+|.||+
T Consensus 325 k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTsp~~sRSt~Y~TDvAKm~~aPifHVN~DDPE 404 (906)
T COG0567 325 KVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTDVAKMIEAPIFHVNADDPE 404 (906)
T ss_pred eeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCCcccccCCCCCCChhhccCCceeecccCCch
Confidence 456799999999 799999999999874 45 8999999999999998666666676779999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHH
Q 016909 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRS 320 (380)
Q Consensus 241 av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~ 320 (380)
++..+.+.|++++..++++++|++.|||.+||+++|+|. +..+..++.+++...+...|.+.|+++|++|+++++.+.+
T Consensus 405 Av~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs-~TqP~mY~~I~~h~t~r~~ya~~Lv~~gvis~~~~~~~~~ 483 (906)
T COG0567 405 AVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPS-VTQPLMYQKIKKHPTVRKLYADKLIAEGVISEEEADELVN 483 (906)
T ss_pred hhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCcccccc-ccCHHHHHHHhcCCChhhhHHHHHHhhccccHHHHHHHHH
Confidence 999999999999999999999999999999999999985 5677888999877888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccccccccC---------CCccHHHHHHHHHHHHHhCCCCCCCCCC
Q 016909 321 SVRKQILHALQEAEKAEKPPISDLFTDVYDV---------SPSNLREQEHSLRETIKKHPQDYPSNVP 379 (380)
Q Consensus 321 ~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~---------~~~~~~~~~~~l~~~~~~~p~~~~~~~~ 379 (380)
+++..++..+...+... .-+-+...+.. .+....+.++.|...+...|+.|..|+.
T Consensus 484 ~~r~~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~t~v~~~~L~~L~~kl~~~Pe~f~~h~~ 548 (906)
T COG0567 484 DYRDALDQGFEVVKEYK---EMDWLEGDWSGYLNAGLRHVDTGVPKKTLKELGKKLCTIPEGFEVHPR 548 (906)
T ss_pred HHHHHhhhhhhHHhHHH---hhhccccccccccCCcccccccccCHHHHHHHHHHhhcCCcceehhHH
Confidence 99999999887766543 11111111111 1122346688899999999999998853
|
|
| >PRK12754 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-28 Score=255.36 Aligned_cols=175 Identities=26% Similarity=0.310 Sum_probs=149.7
Q ss_pred cEEEccccchH------HHHHcCC--CHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCcccccccccCccHHHHHHHHH
Q 016909 88 DFVVPQYREPG------VLLWRGF--SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYA 158 (380)
Q Consensus 88 D~v~~~yR~~~------~~l~~G~--~~~~~l~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~~p~AvG~A~A 158 (380)
|.++.+ .||+ .+...|+ +.+ -+.+|+. .|+.+++|+.. ..+++..++|++|+|+++|+|+|+|
T Consensus 58 DRfvlS-~GH~~~~lYa~l~~~G~~~~~e-~L~~fr~------~gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA 129 (663)
T PRK12754 58 DRFVLS-NGHGSMLIYSLLHLTGYDLPME-ELKNFRQ------LHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIA 129 (663)
T ss_pred CeEEEe-CccHHHHHHHHHHHcCCCCCHH-HHHHhcc------CCCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHH
Confidence 776654 4443 2345786 554 4555654 37778999876 3678999999999999999999999
Q ss_pred hhhcC----------CCceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhc
Q 016909 159 LKMDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 159 ~k~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~ 227 (380)
.|+.+ .+.+|+|++|||+++||.+|||+++|+.++|| +|+||+||++++++++.... .+++.+++++|
T Consensus 130 ~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~~idg~~~~~~-~~~~~~r~~a~ 208 (663)
T PRK12754 130 EKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAY 208 (663)
T ss_pred HHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCCccCcchhhcc-CccHHHHHHhc
Confidence 99875 37899999999999999999999999999996 89999999999999998876 58999999999
Q ss_pred CeeEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 016909 228 GVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 274 (380)
Q Consensus 228 G~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~ 274 (380)
||++++ |||||+++|.+|+++|... .++|++|+++|++.+|.+.
T Consensus 209 Gw~vi~vvDG~D~~ai~~A~~~a~~~---~~~Pt~I~~~T~~g~G~~~ 253 (663)
T PRK12754 209 GWHVIRGIDGHDADSIKRAVEEARAV---TDKPSLLMCKTIIGFGSPN 253 (663)
T ss_pred CCeEEeeECCCCHHHHHHHHHHHHhc---CCCCEEEEEEeeeccCccc
Confidence 999999 8999999999999887653 5799999999999999874
|
|
| >TIGR00232 tktlase_bact transketolase, bacterial and yeast | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-28 Score=255.17 Aligned_cols=179 Identities=22% Similarity=0.237 Sum_probs=148.7
Q ss_pred cEEEcc--ccchH---HHHHcCCC-HHHHHHHhhcCCCCCCCCCCCccccCC-CCCCcccccccccCccHHHHHHHHHhh
Q 016909 88 DFVVPQ--YREPG---VLLWRGFS-MQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 88 D~v~~~--yR~~~---~~l~~G~~-~~~~l~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~~p~AvG~A~A~k 160 (380)
|.++.+ |...+ .+...|+. ..+-+..|+. .|+.+++|+.. ..+++..++|++|+|+++|+|+|+|.|
T Consensus 54 DrfvlS~GH~~~~lYa~l~~~G~~~~~e~L~~fr~------~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k 127 (653)
T TIGR00232 54 DRFVLSNGHGSMLLYSLLHLTGYDLSIEDLKQFRQ------LHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQK 127 (653)
T ss_pred CeEEEECccHHHHHHHHHHHcCCCCCHHHHHhccc------CCCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHH
Confidence 775554 43322 34457864 4444556654 37778999976 467888899999999999999999999
Q ss_pred hcC----------CCceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 161 MDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 161 ~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
+.+ .+.+|+|++|||+++||.+|||+++|+.++|| +|+||+||+|++++++.... .+++.+++++|||
T Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~~~a~Gw 206 (653)
T TIGR00232 128 TLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNRISIDGAVDGSF-TEDVAKRFEAYGW 206 (653)
T ss_pred HHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCCeeecccccccc-CccHHHHHHhcCC
Confidence 863 37789999999999999999999999999996 99999999999999998876 5889999999999
Q ss_pred eEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCC
Q 016909 230 RSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276 (380)
Q Consensus 230 ~~~~V-dG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D 276 (380)
++++| ||||+.++.+|+++|.+ ..++|++|+++|+|.+|.+...
T Consensus 207 ~~~~v~DG~D~~ai~~A~~~a~~---~~~~P~~I~~~T~~g~G~~~~e 251 (653)
T TIGR00232 207 EVLEVEDGHDLAAIDAAIEEAKA---SKDKPTLIEVTTTIGFGSPNKA 251 (653)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHh---CCCCCEEEEEEeeecccCcccC
Confidence 99999 99999999988887653 1248999999999999986443
|
This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. |
| >PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=239.17 Aligned_cols=179 Identities=28% Similarity=0.345 Sum_probs=141.1
Q ss_pred CcEEEccccchH------HHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccC-CCCCCcccccccccCccHHHHHHHHH
Q 016909 87 DDFVVPQYREPG------VLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYG-SNKHNYFTVSSTIATQLPHAVGAAYA 158 (380)
Q Consensus 87 ~D~v~~~yR~~~------~~l~~G~-~~~~~l~e~~g~~~~~~~G~~~~~H~~-~~~~~~~~~~g~lG~~~p~AvG~A~A 158 (380)
.|.++.+ .||+ .+...|+ ...+-+..++. .|+.+++|+. ...+++..++|+||+|+++|+|+|+|
T Consensus 54 rDrfvlS-kGH~~~~lYa~l~~~G~~~~~~~L~~fr~------~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala 126 (332)
T PF00456_consen 54 RDRFVLS-KGHASPALYAILALRGYDLSEEDLKTFRQ------LGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALA 126 (332)
T ss_dssp S-EEEES-SGGGHHHHHHHHHHTTSSS-HHHHTTTTS------TTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHH
T ss_pred CCcEEEe-ccchhHHHHHHHHHhcCCCCHHHHHHhcc------CCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHH
Confidence 4776665 5553 3334787 55555666654 4788999998 45788999999999999999999999
Q ss_pred hhhcC----------CCceeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccCCcCHHHHHhhc
Q 016909 159 LKMDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 159 ~k~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~ 227 (380)
.|+.+ -+.+|+|++|||+++||.+|||+.+|+.++| ++|+|+++|+.++++++.... ..++.+++++|
T Consensus 127 ~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~q~dg~~~~~~-~~~~~~k~~a~ 205 (332)
T PF00456_consen 127 EKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNGIQIDGPTDIVF-SEDIAKKFEAF 205 (332)
T ss_dssp HHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEESEETTEEGGGTH-HSHHHHHHHHT
T ss_pred HHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCCcccCCCccccc-chHHHHHHHHh
Confidence 98742 2578999999999999999999999999999 799999999999999987654 46899999999
Q ss_pred CeeEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCC
Q 016909 228 GVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276 (380)
Q Consensus 228 G~~~~~V-dG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D 276 (380)
||.+++| ||||+++|.+|+.+|... .++|++|.++|...+|.+...
T Consensus 206 Gw~v~~v~dGhd~~~i~~A~~~a~~~---~~kP~~Ii~~TvkG~G~~~~e 252 (332)
T PF00456_consen 206 GWNVIEVCDGHDVEAIYAAIEEAKAS---KGKPTVIIARTVKGKGVPFME 252 (332)
T ss_dssp T-EEEEEEETTBHHHHHHHHHHHHHS---TSS-EEEEEEE-TTTTSTTTT
T ss_pred hhhhcccccCcHHHHHHHHHHHHHhc---CCCCceeecceEEecCchhhc
Confidence 9999998 999999999999998652 479999999999999986543
|
2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A .... |
| >PRK12753 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=253.56 Aligned_cols=180 Identities=22% Similarity=0.214 Sum_probs=151.4
Q ss_pred CcEEEcc--ccc---hHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCcccccccccCccHHHHHHHHHh
Q 016909 87 DDFVVPQ--YRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYAL 159 (380)
Q Consensus 87 ~D~v~~~--yR~---~~~~l~~G~-~~~~~l~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~~p~AvG~A~A~ 159 (380)
.|.++.+ |.. .+++...|+ ...+-|..|+. .|+.+++|+.. ..+++..++|++|+|+++|+|+|+|.
T Consensus 57 rDrfvls~GH~~~~lYa~l~~~G~~~~~e~L~~fr~------~~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~ 130 (663)
T PRK12753 57 RDRFILSNGHASMLLYSLLHLTGYDLPIEELKNFRQ------LHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAE 130 (663)
T ss_pred CCcEEEecccHHHHHHHHHHHhCCCCCHHHHHHhcc------CCCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHH
Confidence 3665543 554 234556785 44455666664 36778899876 46788999999999999999999999
Q ss_pred hhcCC----------CceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 160 KMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 160 k~~~~----------~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
|+.+. +.+|+|++|||+++||.+|||+++|+.++|| +|+||+||++++++++.... .+++.+++++||
T Consensus 131 k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~f~a~G 209 (663)
T PRK12753 131 RTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWF-TDDTAKRFEAYH 209 (663)
T ss_pred HHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCCcCCCChhhhc-ChhHHHHHHHcC
Confidence 98752 6899999999999999999999999999995 99999999999999998765 578999999999
Q ss_pred eeEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCC
Q 016909 229 VRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276 (380)
Q Consensus 229 ~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D 276 (380)
|+++. |||||+.++++|+++|.+. .++|++|+++|++.+|++...
T Consensus 210 w~~~~~vDGhD~~~i~~a~~~a~~~---~~~P~~I~~~T~kG~G~~~~e 255 (663)
T PRK12753 210 WHVIHEIDGHDPQAIKEAILEAQSV---KDKPSLIICRTIIGFGSPNKA 255 (663)
T ss_pred CeEEceeCCCCHHHHHHHHHHHHHC---CCCeEEEEEEEeecCCCCccc
Confidence 99995 9999999999999998753 579999999999999998543
|
|
| >cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=226.51 Aligned_cols=181 Identities=27% Similarity=0.301 Sum_probs=152.9
Q ss_pred CcEEE-c-cccchH---HHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCcccccccccCccHHHHHHHHHhh
Q 016909 87 DDFVV-P-QYREPG---VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 87 ~D~v~-~-~yR~~~---~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~lG~~~p~AvG~A~A~k 160 (380)
.|.++ + .|...+ .+...|+..++-+..+.. .|+.+++|+.... +++...+|++|+++|+|+|+|+|.|
T Consensus 49 rd~~v~s~gH~~~~~ya~l~~~g~~~~~~l~~~~~------~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~ 122 (255)
T cd02012 49 RDRFVLSKGHASPALYAVLALAGYLPEEDLKTFRQ------LGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEK 122 (255)
T ss_pred CCeEEEcCCcHHHHHHHHHHHcCCCCHHHHHHhcc------cCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHH
Confidence 36543 3 255444 455688766666666654 3667888987644 4778889999999999999999999
Q ss_pred hcCCCceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCH
Q 016909 161 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA 239 (380)
Q Consensus 161 ~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~ 239 (380)
+.+++++|+|++|||++++|.+||++++|+.++|| +++|++||+|++++++.......++++++++|||+++.|||||+
T Consensus 123 ~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~ 202 (255)
T cd02012 123 LLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEVDGHDV 202 (255)
T ss_pred HhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhccCchhHHHHHHHcCCeEEEECCCCH
Confidence 99999999999999999999999999999999995 99999999999998876666778999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCC
Q 016909 240 LAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276 (380)
Q Consensus 240 ~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D 276 (380)
+++.+++++|.+. .++|++|+++|.+..||+..+
T Consensus 203 ~~l~~al~~a~~~---~~~P~~I~~~t~kg~g~~~~e 236 (255)
T cd02012 203 EEILAALEEAKKS---KGKPTLIIAKTIKGKGVPFME 236 (255)
T ss_pred HHHHHHHHHHHHc---CCCCEEEEEEeecccccCccC
Confidence 9999999988753 278999999999999998554
|
In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity. |
| >PTZ00089 transketolase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=252.21 Aligned_cols=195 Identities=22% Similarity=0.206 Sum_probs=160.8
Q ss_pred CcEEEcc--ccc---hHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCcccccccccCccHHHHHHHHHh
Q 016909 87 DDFVVPQ--YRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYAL 159 (380)
Q Consensus 87 ~D~v~~~--yR~---~~~~l~~G~-~~~~~l~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~~p~AvG~A~A~ 159 (380)
.|.++.+ |.. .+++...|+ ...+-+..+++ .|+..++|+.. ..+++..++|++|+++++|+|+|+|.
T Consensus 59 rDr~vls~GH~~~~lYa~l~l~G~~~~~~~l~~fr~------~~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~ 132 (661)
T PTZ00089 59 RDRFVLSNGHASALLYSMLHLTGYDLSMEDLKNFRQ------LGSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAE 132 (661)
T ss_pred CCEEEEeCcchHHHHHHHHHHcCCCCCHHHHHhcCC------CCCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHH
Confidence 4775543 666 455667886 44455666665 35667888875 35788889999999999999999999
Q ss_pred hhcCC----------CceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 160 KMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 160 k~~~~----------~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
|+.+. +.+|+|++|||+++||.+|||+|+|+.++|| +|+||+||++++++++.... .+++.+++++||
T Consensus 133 k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~~~~~~-~~~~~~~f~a~G 211 (661)
T PTZ00089 133 KHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKITIDGNTDLSF-TEDVEKKYEAYG 211 (661)
T ss_pred HHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCcccccCccccc-CccHHHHHHhcC
Confidence 98653 7899999999999999999999999999995 99999999999999987654 578999999999
Q ss_pred eeEEEE-eCC-CHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCC---CCCChhHHHHHH
Q 016909 229 VRSIRV-DGN-DALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDST---KYRPVDEIEWWR 291 (380)
Q Consensus 229 ~~~~~V-dG~-D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~---~Yr~~~e~~~~~ 291 (380)
|+++.| ||| |+.++++++++|.+. .++|++|+++|+|..||...+... .+.+++|++.++
T Consensus 212 ~~~i~v~dG~~D~~~l~~a~~~a~~~---~~~P~~I~~~T~kG~G~~~e~~~~~H~~~~~~~~~~~~~ 276 (661)
T PTZ00089 212 WHVIEVDNGNTDFDGLRKAIEEAKKS---KGKPKLIIVKTTIGYGSSKAGTEKVHGAPLGDEDIAQVK 276 (661)
T ss_pred CcEEEeCCCCCCHHHHHHHHHHHHhc---CCCcEEEEEEeeecCCCCcCCCCCccCCCCCHHHHHHHH
Confidence 999999 999 999999999988753 368999999999999986655322 356777877775
|
|
| >PRK05899 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-27 Score=246.33 Aligned_cols=185 Identities=25% Similarity=0.248 Sum_probs=153.6
Q ss_pred CcEEEcc--ccc---hHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCcccccccccCccHHHHHHHHHh
Q 016909 87 DDFVVPQ--YRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYAL 159 (380)
Q Consensus 87 ~D~v~~~--yR~---~~~~l~~G~-~~~~~l~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~~p~AvG~A~A~ 159 (380)
.|.++.+ |-. .+++...|+ ..++-+..+... |+.++.|+... .+++...+|++|+++|+|+|+|+|.
T Consensus 61 ~Dr~i~s~GH~~~~~Ya~l~~~G~~~~~~~l~~~~~~------~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~ 134 (624)
T PRK05899 61 RDRFVLSAGHGSMLLYSLLHLAGYDLSIDDLKNFRQL------GSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAE 134 (624)
T ss_pred CCEEEEEChhHHHHHHHHHHHcCCCCCHHHHHHhcCC------CCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHH
Confidence 4777654 444 245667897 555556666432 45567887753 4677778999999999999999999
Q ss_pred hhcCC----------CceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 160 KMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 160 k~~~~----------~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
++.+. +++|+|++|||++++|.+||+|++|+.++|| +|+|++||+|+++++.... ...++.+++++||
T Consensus 135 ~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~~~~~-~~~~~~~~~~a~G 213 (624)
T PRK05899 135 KYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGPTEGW-FTEDVKKRFEAYG 213 (624)
T ss_pred HHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCccccccccc-ccccHHHHhccCC
Confidence 98776 7899999999999999999999999999996 9999999999999877643 3578999999999
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCC
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYR 282 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr 282 (380)
|++++|||||+.++.+++++|.+ .++|++|+++|.|..||+..+++..|+
T Consensus 214 ~~~~~VdG~d~~~l~~al~~a~~----~~~P~vI~v~t~kg~g~~~~e~~~~~H 263 (624)
T PRK05899 214 WHVIEVDGHDVEAIDAAIEEAKA----STKPTLIIAKTIIGKGAPNKEGTHKVH 263 (624)
T ss_pred CeEEEECCCCHHHHHHHHHHHHh----cCCCEEEEEEeEeccCCccccCCCccc
Confidence 99999999999999999998875 368999999999999998776654555
|
|
| >cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=217.74 Aligned_cols=167 Identities=19% Similarity=0.193 Sum_probs=137.4
Q ss_pred CCcEEEcc--ccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCcccccccccCccHHHHHHHHHhhhc
Q 016909 86 NDDFVVPQ--YREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMD 162 (380)
Q Consensus 86 ~~D~v~~~--yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~lG~~~p~AvG~A~A~k~~ 162 (380)
+.|.++.+ |...+++...|. ++-|.++.. .|+ +++|+.... +++..++|++|+++|+|+|+|+|.|++
T Consensus 24 ~rDr~ils~gH~~~~~~~~~g~--~~~l~~~~~------~~~-~~g~p~~~~~~~~~~~~G~lG~gl~~A~G~Ala~k~~ 94 (195)
T cd02007 24 PKDKIIWDVGHQAYPHKILTGR--RDQFHTLRQ------YGG-LSGFTKRSESEYDAFGTGHSSTSISAALGMAVARDLK 94 (195)
T ss_pred CCCeEEEecccHHHHHHHHHCC--HHHHhhhhc------CCC-CCCCCcCCCCCCceECCCchhhhHHHHHHHHHHHHHh
Confidence 35665554 444444555665 334555654 244 888876543 566778999999999999999999999
Q ss_pred CCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEE-EeCCCHHH
Q 016909 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR-VDGNDALA 241 (380)
Q Consensus 163 ~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~-VdG~D~~a 241 (380)
+.+++|+|++|||+++||++||++++|+.+++|+|+||+||+|++++++. +..++++++||.... |||+|+++
T Consensus 95 ~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~~~------~~~~~~~a~G~~~~~~vdG~d~~~ 168 (195)
T cd02007 95 GKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVG------TPGNLFEELGFRYIGPVDGHNIEA 168 (195)
T ss_pred CCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCCCC------CHHHHHHhcCCCccceECCCCHHH
Confidence 99999999999999999999999999999988999999999999987765 477889999999996 99999999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeecCCC
Q 016909 242 IYSAVHAAREMAIGEGRPILIEALTYRVGH 271 (380)
Q Consensus 242 v~~a~~~A~~~ar~~~gP~lIe~~t~R~~g 271 (380)
+.+++++|.+ .++|++|+++|.+..|
T Consensus 169 l~~a~~~a~~----~~~P~~I~~~T~kg~g 194 (195)
T cd02007 169 LIKVLKEVKD----LKGPVLLHVVTKKGKG 194 (195)
T ss_pred HHHHHHHHHh----CCCCEEEEEEEecccC
Confidence 9999988754 5799999999988765
|
Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6). |
| >cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=226.70 Aligned_cols=183 Identities=18% Similarity=0.123 Sum_probs=152.1
Q ss_pred hcCCC------CcEEEc-cccc---hHHHHHcCCCHHHHHHHhhcCCCCCCCCC--CCccccCCC-CC-CcccccccccC
Q 016909 82 AAIKN------DDFVVP-QYRE---PGVLLWRGFSMQEFANQCFGNKADYGKGR--QMPIHYGSN-KH-NYFTVSSTIAT 147 (380)
Q Consensus 82 ~~l~~------~D~v~~-~yR~---~~~~l~~G~~~~~~l~e~~g~~~~~~~G~--~~~~H~~~~-~~-~~~~~~g~lG~ 147 (380)
..|+. .|.|++ .|-. .+++...|+...+-|..|+.. |+ +++.|+... .+ ++..++|++|+
T Consensus 49 ~~l~~~p~~~~RDRvlSkGHas~~lYA~L~l~G~~~~edL~~fr~~------gs~p~l~g~p~~~~~~~gve~sTGSLGq 122 (386)
T cd02017 49 HFFRARGEGGGGDLVYFQGHASPGIYARAFLEGRLTEEQLDNFRQE------VGGGGLSSYPHPWLMPDFWEFPTVSMGL 122 (386)
T ss_pred HhcCCCCCCCCCCEEEeCCcccHHHHHHHHHcCCCCHHHHHhhccC------CCCCCCCCCCCCCCCCCCeeeCCchHHH
Confidence 45664 688665 2444 234556896555667777653 44 577777542 23 48889999999
Q ss_pred ccHHHHHHHHHhhh-------cCCCceeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccc-cCCc
Q 016909 148 QLPHAVGAAYALKM-------DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQ-FRSD 218 (380)
Q Consensus 148 ~~p~AvG~A~A~k~-------~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~-~~~~ 218 (380)
|+++|+|+|+|.|+ .+.+.+|+|++|||+++||.+||++++|+.++| ++|+|+++|++++++++... ...+
T Consensus 123 GLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qidG~t~~v~~~~e 202 (386)
T cd02017 123 GPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLDGPVRGNGKIIQ 202 (386)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccCCcccccccCch
Confidence 99999999999998 556789999999999999999999999999999 89999999999999998875 3668
Q ss_pred CHHHHHhhcCeeEEEEe---------------------------------------------------------------
Q 016909 219 GAVVKGRAYGVRSIRVD--------------------------------------------------------------- 235 (380)
Q Consensus 219 ~~~~~a~a~G~~~~~Vd--------------------------------------------------------------- 235 (380)
++.+++++|||.+++||
T Consensus 203 ~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~~~~~~~~d~~~ 282 (386)
T cd02017 203 ELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELKALVTDLSDEDL 282 (386)
T ss_pred hHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhh
Confidence 99999999999999998
Q ss_pred ------CCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCC
Q 016909 236 ------GNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 273 (380)
Q Consensus 236 ------G~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 273 (380)
|||+.+|.+|+.++.+. .++|++|.++|...+|.+
T Consensus 283 ~~~~~gGhD~~~i~~A~~~a~~~---~~kPt~Iia~TikG~G~~ 323 (386)
T cd02017 283 WALNRGGHDPRKVYAAYKKAVEH---KGKPTVILAKTIKGYGLG 323 (386)
T ss_pred hhhccCCCCHHHHHHHHHHHHhC---CCCCeEEEEeCeecCCCC
Confidence 99999999999988753 468999999999999976
|
coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme. |
| >PLN02790 transketolase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=244.45 Aligned_cols=183 Identities=22% Similarity=0.214 Sum_probs=151.9
Q ss_pred CCcEEEcc--ccc---hHHHHHcCC--CHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCcccccccccCccHHHHHHHH
Q 016909 86 NDDFVVPQ--YRE---PGVLLWRGF--SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAY 157 (380)
Q Consensus 86 ~~D~v~~~--yR~---~~~~l~~G~--~~~~~l~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~~p~AvG~A~ 157 (380)
+.|.++.+ |-. .+++...|+ ...+-|..++. .|+..++|+.. ..+++..++|++|+++++|+|+|+
T Consensus 46 ~rDrfvls~GH~~~~lYa~l~~~G~~~~~~~~l~~~r~------~~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~ 119 (654)
T PLN02790 46 NRDRFVLSAGHGCMLQYALLHLAGYDSVQMEDLKQFRQ------WGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLAL 119 (654)
T ss_pred CCCEEEEeCcchHHHHHHHHHHcCCCCCCHHHHHHhcc------CCCCCCCCCCCCCCCCccccCCchhchHHHHHHHHH
Confidence 45877764 555 345667887 23444666664 36677889875 467899999999999999999999
Q ss_pred Hhhh-----cCC-----CceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhh
Q 016909 158 ALKM-----DRK-----DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 158 A~k~-----~~~-----~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a 226 (380)
|.|+ +++ +.+|+|++|||++++|.+|||+|+|+.++|| +|+||+||+|+|++++.... ..++.+++++
T Consensus 120 A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~~i~~~~~~~~-~~~~~~~f~a 198 (654)
T PLN02790 120 AEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISIDGDTEIAF-TEDVDKRYEA 198 (654)
T ss_pred HHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCccccCCccccc-chhHHHHHHH
Confidence 9995 342 6899999999999999999999999999995 99999999999999988654 5788999999
Q ss_pred cCeeEEEEeC--CCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCC
Q 016909 227 YGVRSIRVDG--NDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDS 278 (380)
Q Consensus 227 ~G~~~~~VdG--~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~ 278 (380)
|||+++.||| ||++++++|+++|.+. .++|++|+++|++.+|.+...++
T Consensus 199 ~G~~~~~vdgg~hd~~~l~~a~~~a~~~---~~~P~lI~~~T~kG~G~~~~e~~ 249 (654)
T PLN02790 199 LGWHTIWVKNGNTDYDEIRAAIKEAKAV---TDKPTLIKVTTTIGYGSPNKANS 249 (654)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHhc---CCCeEEEEEEEeecCCCccccCC
Confidence 9999999988 8999999999888653 57999999999999998754433
|
|
| >PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-26 Score=238.64 Aligned_cols=240 Identities=19% Similarity=0.195 Sum_probs=174.6
Q ss_pred CeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCC-CCcEEE
Q 016909 13 PCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVV 91 (380)
Q Consensus 13 ~~~~~~~~~g~~~~~~~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~-~~D~v~ 91 (380)
+++.+|+.=. .+.+.++++.++|.++- .-+|.+.++.. .. ..|.++--.++. |... .+-..++ +.|.++
T Consensus 2 ~~~~~~~~~~---~~~~~~~~~~~~l~~~a-~~iR~~~~~~~--~~-~~gH~g~~ls~~--~i~~-~L~~~~~~~rDr~i 71 (580)
T PRK05444 2 PKYPLLDTIN---SPADLKKLSEEELPQLA-DEIREFLIDVV--SK-TGGHLGSNLGVV--ELTV-ALHYVFDTPKDRII 71 (580)
T ss_pred CCCchhhccC---CHHHHhcCCHHHHHHHH-HHHHHHHHHHH--Hh-cCCCcCCCccHH--HHHH-HHHHhcCCCCccEE
Confidence 4556665332 23456778877766552 23344444333 32 356554322221 3332 3333443 457766
Q ss_pred cc--ccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCcccccccccCccHHHHHHHHHhhhc-CCCce
Q 016909 92 PQ--YREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMD-RKDAC 167 (380)
Q Consensus 92 ~~--yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~~p~AvG~A~A~k~~-~~~~~ 167 (380)
.+ |...+++...|. .+-|..++. .|+ +++|+... .+++..++|++|+++|+|+|+|+|.|++ +++++
T Consensus 72 ls~GH~~y~~~~~~g~--~~~l~~~~~------~~s-~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~ 142 (580)
T PRK05444 72 WDVGHQAYPHKILTGR--RDRFDTLRQ------KGG-LSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRK 142 (580)
T ss_pred EeccHHHHHHHHHhCc--HHHhcCccc------CCC-CCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCe
Confidence 54 555556667786 233444543 244 67888764 4788889999999999999999999998 58899
Q ss_pred eEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccc---cCCcCHHHHHhhcCeeEE-EEeCCCHHHHH
Q 016909 168 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ---FRSDGAVVKGRAYGVRSI-RVDGNDALAIY 243 (380)
Q Consensus 168 vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~---~~~~~~~~~a~a~G~~~~-~VdG~D~~av~ 243 (380)
|+|++|||+++||++||++++|+.+++|+|+|++||+|++++++... ....++.+++++|||+++ .|||||+++++
T Consensus 143 v~~i~GDG~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~ 222 (580)
T PRK05444 143 VVAVIGDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALI 222 (580)
T ss_pred EEEEEcccccccCHHHHHHHHHHhhCCCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHH
Confidence 99999999999999999999999999999999999999998877543 233567789999999999 59999999999
Q ss_pred HHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016909 244 SAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 244 ~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
++++++.+ .++|++|+++|.|..|.+..
T Consensus 223 ~al~~a~~----~~~P~lI~~~T~kg~G~~~~ 250 (580)
T PRK05444 223 ETLKNAKD----LKGPVLLHVVTKKGKGYAPA 250 (580)
T ss_pred HHHHHHHh----CCCCEEEEEEecCCcCCChh
Confidence 99987664 47999999999999997644
|
|
| >COG0021 TktA Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=222.33 Aligned_cols=176 Identities=25% Similarity=0.299 Sum_probs=148.0
Q ss_pred CcEEEccccchHHHH------HcCC--CHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCcccccccccCccHHHHHHHH
Q 016909 87 DDFVVPQYREPGVLL------WRGF--SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAY 157 (380)
Q Consensus 87 ~D~v~~~yR~~~~~l------~~G~--~~~~~l~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~~p~AvG~A~ 157 (380)
.|-++.+ -||+.++ ..|+ +++++ .+|+. .|+..|+||.- ..+++..++|+||+|++.|||+|+
T Consensus 59 RDRFVLS-aGHgSmllYsllhl~Gy~ls~edL-k~FRQ------~~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAl 130 (663)
T COG0021 59 RDRFVLS-AGHGSMLLYSLLHLTGYDLSLEDL-KNFRQ------LGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMAL 130 (663)
T ss_pred CccEEec-CCchhHHHHHHHHHccCCCCHHHH-Hhhcc------CCCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHH
Confidence 4666555 4565333 2454 55554 44655 37888999984 478899999999999999999999
Q ss_pred HhhhcC-----C-----CceeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccCCcCHHHHHhh
Q 016909 158 ALKMDR-----K-----DACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 158 A~k~~~-----~-----~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a 226 (380)
|.|+.. + |..++|++|||+++||..+|+..+|+.++| ++|++.++|+++|++.+...+ .+|+.+|+++
T Consensus 131 Ae~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f-~ed~~~RfeA 209 (663)
T COG0021 131 AEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSF-TEDVAKRFEA 209 (663)
T ss_pred HHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCceeccCccccc-chhHHHHHHh
Confidence 988642 2 458999999999999999999999999999 799999999999999988876 6899999999
Q ss_pred cCeeEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 016909 227 YGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 274 (380)
Q Consensus 227 ~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~ 274 (380)
|||+++ .+||||+++|.+|+++|... .++|++|+|+|.-.+|-..
T Consensus 210 yGW~vi~~~DG~D~e~I~~Ai~~Ak~~---~dkPtlI~~kTiIG~Gsp~ 255 (663)
T COG0021 210 YGWNVIRVIDGHDLEAIDKAIEEAKAS---TDKPTLIIVKTIIGKGSPN 255 (663)
T ss_pred cCCeEEEecCCCCHHHHHHHHHHHHhc---CCCCeEEEEEeeeecCCCC
Confidence 999999 68999999999999999863 6899999999999888665
|
|
| >TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-24 Score=225.58 Aligned_cols=228 Identities=18% Similarity=0.206 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cCCcccccccchhHHHHHHHHhcCCC------CcEEEccccchH------
Q 016909 35 EGVAIKMYNDMVTLQTMDTIFYEAQR----QGRISFYLTTSGEEAINIASAAAIKN------DDFVVPQYREPG------ 98 (380)
Q Consensus 35 ~~~l~~~y~~M~~~R~~e~~~~~~~~----~g~i~~~~~~~GqEa~~~~~~~~l~~------~D~v~~~yR~~~------ 98 (380)
+.++.+..+..+|-..++........ .|.++...++. +...+.....|+. .|.|++ .||+
T Consensus 71 d~~~e~~i~~~iR~~ai~MV~~A~~~~~~vgGHigsslS~a--dIl~vLy~~~lr~~~~~~~rD~VlS--KGHasp~lYA 146 (885)
T TIGR00759 71 DLELERRIRSIIRWNAIAMVLRANKKDLGLGGHISTYASAA--TLYEVGFNHFFRGHSEGGGGDLVFF--QGHAAPGIYA 146 (885)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcCCcHHHH--HHHHHHHHHhcCCCCCCCCCCEEEE--CCcHHHHHHH
Confidence 44455555555554444433221101 23333222221 3344444456663 687665 4553
Q ss_pred HHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CC-cccccccccCccHHHHHHHHHhhh-------cCCCceeE
Q 016909 99 VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HN-YFTVSSTIATQLPHAVGAAYALKM-------DRKDACAV 169 (380)
Q Consensus 99 ~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~-~~-~~~~~g~lG~~~p~AvG~A~A~k~-------~~~~~~vv 169 (380)
.+...|+..++-|..|+... .|+++++|+.... ++ +..++|+||+|+++|+|+|++.|+ +..+.+|+
T Consensus 147 ~L~l~G~ls~e~L~~FRq~~----~g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVy 222 (885)
T TIGR00759 147 RAFLEGRLTEEQLDNFRQEV----QGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVW 222 (885)
T ss_pred HHHHcCCCCHHHHHHhcCCC----CCCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEE
Confidence 34458977777777776421 1567778776432 43 777899999999999999999996 56788999
Q ss_pred EEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccC-CcCHHHHHhhcCeeEEEE-------------
Q 016909 170 TYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRV------------- 234 (380)
Q Consensus 170 ~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~~-~~~~~~~a~a~G~~~~~V------------- 234 (380)
|++|||+++||.+|||+.+|++++| ++|+||++|..++++++..... ..++.++++++||++++|
T Consensus 223 vllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d 302 (885)
T TIGR00759 223 AFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARD 302 (885)
T ss_pred EEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCC
Confidence 9999999999999999999999999 8999999999999999887544 568999999999999999
Q ss_pred --------------------------------------------------------eCCCHHHHHHHHHHHHHHhhccCC
Q 016909 235 --------------------------------------------------------DGNDALAIYSAVHAAREMAIGEGR 258 (380)
Q Consensus 235 --------------------------------------------------------dG~D~~av~~a~~~A~~~ar~~~g 258 (380)
+|||+.+|++|++.|.+. .++
T Consensus 303 ~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~---~gr 379 (885)
T TIGR00759 303 TSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQEH---KGQ 379 (885)
T ss_pred CccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHhC---CCC
Confidence 599999999999988764 468
Q ss_pred cEEEEEEeecCCCCC
Q 016909 259 PILIEALTYRVGHHT 273 (380)
Q Consensus 259 P~lIe~~t~R~~gHs 273 (380)
|++|.++|...+|.+
T Consensus 380 PTvIlA~TvKG~G~~ 394 (885)
T TIGR00759 380 PTVILAKTIKGYGMG 394 (885)
T ss_pred CEEEEEeeeecCCCC
Confidence 999999999999976
|
WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity. |
| >cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-25 Score=205.06 Aligned_cols=167 Identities=22% Similarity=0.311 Sum_probs=144.6
Q ss_pred chhHHHHHHHHhcCCC-CcEEEccccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCcc
Q 016909 71 SGEEAINIASAAAIKN-DDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 149 (380)
Q Consensus 71 ~GqEa~~~~~~~~l~~-~D~v~~~yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~ 149 (380)
.||++.++.++..|.. .|.+++.||.+.. | ++++|.+|. . .|+ +++|+....+++...+|+||+++
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~~----g--l~~lf~qfs-~-----~gg-~psH~~~~tpGi~~~~G~LG~gL 68 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDEE----G--MRKLFKQFS-F-----PGG-IPSHAAPETPGSIHEGGELGYSL 68 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccHH----H--HHHHHHhcC-C-----CCC-CCCCCcccCCCeeecccchhhHH
Confidence 5899999988888886 5999999997751 2 256777763 1 233 89999888899999999999999
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchH---HHHHHHHHHcCC-CEEEEEEcCCcceeeecccc-cCCcCHHHHH
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF---HAALNFSAVTEA-PVIFICRNNGWAISTPISDQ-FRSDGAVVKG 224 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~---~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~-~~~~~~~~~a 224 (380)
++|+|+|+ ++++.+|+|++|||++++|.+ |++.+++..+++ +|+.|++||+|+|++++... .+.+++.+++
T Consensus 69 s~A~G~a~----d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~ 144 (227)
T cd02011 69 SHAYGAVF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALF 144 (227)
T ss_pred HHHHHhhh----cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHH
Confidence 99999974 578899999999999999996 999999999999 79999999999999999865 5578899999
Q ss_pred hhcCeeEEEEeCCCHHHHHHHHHHHHHHhh
Q 016909 225 RAYGVRSIRVDGNDALAIYSAVHAAREMAI 254 (380)
Q Consensus 225 ~a~G~~~~~VdG~D~~av~~a~~~A~~~ar 254 (380)
++|||+++.|||||++++++++++|++++|
T Consensus 145 ~~yG~~~~~VDG~D~~av~~~~a~a~~~~~ 174 (227)
T cd02011 145 RGYGYEPYFVEGDDPETMHQAMAATLDWAI 174 (227)
T ss_pred HhCCCceEEECCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998886543
|
This enzyme requires divalent magnesium ions and TPP for activity. |
| >TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=228.68 Aligned_cols=226 Identities=17% Similarity=0.182 Sum_probs=167.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCC-CCcEEEcc--ccchHHHHHcCC
Q 016909 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQ--YREPGVLLWRGF 105 (380)
Q Consensus 29 ~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~-~~D~v~~~--yR~~~~~l~~G~ 105 (380)
+.++++.++|.++-.. +|.+.++.. . ...|.++ +++|-=-+.+++-..++ +.|.++.+ |...++++..|+
T Consensus 9 dl~~l~~~~l~~la~~-iR~~~i~~~--~-~~~GH~g---~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y~~~~~~G~ 81 (617)
T TIGR00204 9 ELRLLSIDELEKLCDE-LRRYLLESV--S-ASGGHLA---SGLGTVELTVALHYVFNTPKDQFIWDVGHQAYPHKLLTGR 81 (617)
T ss_pred HHhhCCHHHHHHHHHH-HHHHHHHHH--h-ccCCCcC---cchhHHHHHHHHHhhCCCCCCcEEEecchHHHHHHHHhCc
Confidence 4567787776655433 344444432 2 2344443 33333223344444566 56877653 777778888997
Q ss_pred CHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcc-cccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHH
Q 016909 106 SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF-TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHA 184 (380)
Q Consensus 106 ~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~-~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~E 184 (380)
.+-|..++.. |+ +++|+....+++. ..+|++|+++++|+|+|+|.|+++.+.+|+|++|||++++|.+||
T Consensus 82 --~~~l~~~r~~------g~-l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~E 152 (617)
T TIGR00204 82 --REKFSTLRQK------KG-LHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFE 152 (617)
T ss_pred --HHHhcchhhc------CC-cCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHH
Confidence 3445666542 44 8888876555555 479999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEEEEcCCcceeeecccccC------------------------Cc---C-HHHH-------------
Q 016909 185 ALNFSAVTEAPVIFICRNNGWAISTPISDQFR------------------------SD---G-AVVK------------- 223 (380)
Q Consensus 185 al~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~------------------------~~---~-~~~~------------- 223 (380)
|+|+|+.++||+|+||+||++++++++..... .+ + +.++
T Consensus 153 a~~~a~~~~l~~i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 232 (617)
T TIGR00204 153 ALNHAGDLKTDMIVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVPGT 232 (617)
T ss_pred HHHHHHhcCCCEEEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCccc
Confidence 99999999999999999999999988752210 01 1 3344
Q ss_pred -HhhcCeeEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 016909 224 -GRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 274 (380)
Q Consensus 224 -a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~ 274 (380)
+++|||.++ .|||||+.++.++++.+.. .++|++|.++|.+..|-+.
T Consensus 233 ~f~~~G~~~~~~vDGhd~~~l~~al~~ak~----~~~P~~i~~~T~KGkG~~~ 281 (617)
T TIGR00204 233 FFEELGFNYIGPVDGHDLLELIETLKNAKK----LKGPVFLHIQTKKGKGYKP 281 (617)
T ss_pred hHHHcCCcEEcccCCCCHHHHHHHHHHHhc----CCCCEEEEEEecCCCCCch
Confidence 899999999 7999999999999986653 5789999999999988543
|
DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP). |
| >TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-23 Score=222.30 Aligned_cols=231 Identities=18% Similarity=0.191 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cCCcccccccchhHHHHHHHHhcCCC------CcEEEcc-ccchH---HH
Q 016909 35 EGVAIKMYNDMVTLQTMDTIFYEAQR----QGRISFYLTTSGEEAINIASAAAIKN------DDFVVPQ-YREPG---VL 100 (380)
Q Consensus 35 ~~~l~~~y~~M~~~R~~e~~~~~~~~----~g~i~~~~~~~GqEa~~~~~~~~l~~------~D~v~~~-yR~~~---~~ 100 (380)
+.++.+-....+|...++........ .|.++...++ -+...+.....|+. .|+|++. |-..+ .+
T Consensus 71 d~~~~~~~a~~iR~~a~~mv~~A~~~~~~~gGH~gs~lS~--a~i~~vLy~~~lr~~~~~~~rD~VlskGHasp~lYA~l 148 (889)
T TIGR03186 71 DLQLEERLAAILRWNALAMVVRANRAYGELGGHIASYASA--ADLFEVGFNHFFRAAGDASGGDLVYFQPHSAPGVYARA 148 (889)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcCcHHH--HHHHHHHHHHhCCCCCCCCCCCEEEECCchHHHHHHHH
Confidence 44555555556655555444322211 2343332222 24444445556663 6876663 44443 33
Q ss_pred HHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCC-CC-CcccccccccCccHHHHHHHHHhhhc-------CCCceeEEE
Q 016909 101 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSN-KH-NYFTVSSTIATQLPHAVGAAYALKMD-------RKDACAVTY 171 (380)
Q Consensus 101 l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~-~~-~~~~~~g~lG~~~p~AvG~A~A~k~~-------~~~~~vv~~ 171 (380)
...|+..++-|.+|+... .|+++++|+... .+ ++..++|+||+|+++|+|+|++.|+. ..+.+|+|+
T Consensus 149 ~l~G~l~~e~L~~fRq~~----~~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~l 224 (889)
T TIGR03186 149 FLEGFLSDAQLAHYRQEI----AGPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGF 224 (889)
T ss_pred HHcCCCCHHHHHHhcCCC----CCCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEE
Confidence 457976666677776531 144555544322 24 47778999999999999999998843 236899999
Q ss_pred eCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccC-CcCHHHHHhhcCeeEEEE---------------
Q 016909 172 FGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRV--------------- 234 (380)
Q Consensus 172 ~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~~-~~~~~~~a~a~G~~~~~V--------------- 234 (380)
+|||+++||.+|||+.+|++++| ++|+||++|..++++++..... ..++.+++++|||++++|
T Consensus 225 lGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~ 304 (889)
T TIGR03186 225 FGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDAT 304 (889)
T ss_pred EcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccc
Confidence 99999999999999999999999 8999999999999999887433 578999999999999999
Q ss_pred ------------------------------------------------------eCCCHHHHHHHHHHHHHHhhccCCcE
Q 016909 235 ------------------------------------------------------DGNDALAIYSAVHAAREMAIGEGRPI 260 (380)
Q Consensus 235 ------------------------------------------------------dG~D~~av~~a~~~A~~~ar~~~gP~ 260 (380)
+|||+.+|++|+++|.+. .++|+
T Consensus 305 ~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~---~~~PT 381 (889)
T TIGR03186 305 GALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRH---EGRPT 381 (889)
T ss_pred hHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC---CCCCE
Confidence 599999999999999864 46999
Q ss_pred EEEEEeecCCCCCC
Q 016909 261 LIEALTYRVGHHTT 274 (380)
Q Consensus 261 lIe~~t~R~~gHs~ 274 (380)
+|.++|...+|-+.
T Consensus 382 vIla~TvkG~G~~~ 395 (889)
T TIGR03186 382 VILAKTMKGFGMGA 395 (889)
T ss_pred EEEEEeeecCCCCc
Confidence 99999999988644
|
Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component. |
| >PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-23 Score=220.41 Aligned_cols=231 Identities=18% Similarity=0.210 Sum_probs=164.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCC-CCcEEEc--cccchHHHHHc
Q 016909 27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLWR 103 (380)
Q Consensus 27 ~~~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~-~~D~v~~--~yR~~~~~l~~ 103 (380)
+.+.++|+.++|.++-.. +|.+.++.. ... .|.++. ++|-=-+.+++-..++ +.|.++. .|-..++++..
T Consensus 15 p~dl~~l~~~~l~~~a~~-iR~~ii~~~--~~~-~GH~g~---~ls~vel~~aL~~~~~~prDr~i~s~GH~~Y~~~~l~ 87 (641)
T PRK12571 15 PADLRALSDAELEQLADE-LRAEVISAV--SET-GGHLGS---SLGVVELTVALHAVFNTPKDKLVWDVGHQCYPHKILT 87 (641)
T ss_pred HHHHHhCCHHHHHHHHHH-HHHHHHHHH--HHh-CCCcCC---CchHHHHHHHHHHhcCCCCCcEEEECchHHHHHHHHh
Confidence 345677887777655333 344444433 222 355432 3332223334444444 5687765 36666777778
Q ss_pred CCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchH
Q 016909 104 GFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF 182 (380)
Q Consensus 104 G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~ 182 (380)
|. .+-|..++.. |+ +++|+...+ ++.....|+-++++++|+|+|+|.|+.+++++|+|++|||++++|.+
T Consensus 88 g~--~~~l~~~r~~------~~-l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~ 158 (641)
T PRK12571 88 GR--RDRFRTLRQK------GG-LSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAGMA 158 (641)
T ss_pred CC--HHHHhhhhhC------CC-cCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeEEEEEeCchhhcchH
Confidence 86 4556666642 43 667776533 22223344446678999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEEcCCcceeeecc-------cccCCcCH-----------------------------------
Q 016909 183 HAALNFSAVTEAPVIFICRNNGWAISTPIS-------DQFRSDGA----------------------------------- 220 (380)
Q Consensus 183 ~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~-------~~~~~~~~----------------------------------- 220 (380)
||++++|+.+++|+++|++||++++++++. +......+
T Consensus 159 ~Eal~~a~~~~~~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (641)
T PRK12571 159 YEALNNAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGG 238 (641)
T ss_pred HHHHHHHHHhCCCEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhccch
Confidence 999999999999999999999999998874 21112111
Q ss_pred HHHHhhcCeeEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCC
Q 016909 221 VVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276 (380)
Q Consensus 221 ~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D 276 (380)
.+++++|||.++ .|||||+.++.++++++.+. .++|++|.++|.+..|.+...
T Consensus 239 ~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~---~~~P~~I~~~T~kGkG~~~~e 292 (641)
T PRK12571 239 GTLFEELGFTYVGPIDGHDMEALLSVLRAARAR---ADGPVLVHVVTEKGRGYAPAE 292 (641)
T ss_pred hhHHHHcCCEEECccCCCCHHHHHHHHHHHHhC---CCCCEEEEEEecCccCcchhh
Confidence 479999999999 79999999999999887642 378999999999999976443
|
|
| >PLN02234 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=211.49 Aligned_cols=198 Identities=14% Similarity=0.127 Sum_probs=152.0
Q ss_pred ccchhHHHHHHHHhcCC-CCcEEEcc--ccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCccccccc
Q 016909 69 TTSGEEAINIASAAAIK-NDDFVVPQ--YREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSST 144 (380)
Q Consensus 69 ~~~GqEa~~~~~~~~l~-~~D~v~~~--yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~ 144 (380)
++.|-=-+.+++-..|+ |.|.++.. |-..++.+..|.. +-|..++.. |+ +++|+... .++....+|+
T Consensus 108 ssLs~vEl~~aL~~vf~~p~DriI~s~GHqaya~~~ltgr~--~~l~t~r~~------gg-l~G~p~~~es~~d~~~tGs 178 (641)
T PLN02234 108 SNLGVVELTVALHYIFNTPHDKILWDVGHQSYPHKILTGRR--GKMKTIRQT------NG-LSGYTKRRESEHDSFGTGH 178 (641)
T ss_pred ccchHHHHHHHHHHhcCCCCCeEEEecchhHHHHHHHHhhh--hhhcccccC------CC-cCCCCCCCCCCCcEECCCc
Confidence 34443333344444554 67887764 6666777777752 234455432 33 77887654 4678888999
Q ss_pred ccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcc------eeeecccccCC-
Q 016909 145 IATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA------ISTPISDQFRS- 217 (380)
Q Consensus 145 lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~------i~~~~~~~~~~- 217 (380)
+|+++++|+|+|+|.++++.+..|||++|||++++|++|||+|.|+..+-|+|+|+++|+.+ .++++......
T Consensus 179 lg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~ 258 (641)
T PLN02234 179 SSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALS 258 (641)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHH
Confidence 99999999999999999999999999999999999999999999996666999999999983 44444322111
Q ss_pred --------------cCHHHHHhhcCeeEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCC
Q 016909 218 --------------DGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDD 277 (380)
Q Consensus 218 --------------~~~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd 277 (380)
++..+++++|||.++ .|||||++++.++++++... ..++|++|.++|.+..|.+....
T Consensus 259 ~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~~--~~~~P~vI~~~T~KGkGv~~~E~ 331 (641)
T PLN02234 259 CALSRLQSNCGMIRETSSTLFEELGFHYVGPVDGHNIDDLVSILETLKST--KTIGPVLIHVVTEKGRGYPYAER 331 (641)
T ss_pred HHHHHhhcccccccCCHHHHHHHcCCEEEeeECCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEecCCCcchhhc
Confidence 356789999999999 99999999999999887542 23589999999999999887654
|
|
| >PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=216.90 Aligned_cols=230 Identities=19% Similarity=0.203 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----CCcccccccchhHHHHHHHHhcCC------CCcEEEcc-ccchH---HH
Q 016909 35 EGVAIKMYNDMVTLQTMDTIFYEAQRQ----GRISFYLTTSGEEAINIASAAAIK------NDDFVVPQ-YREPG---VL 100 (380)
Q Consensus 35 ~~~l~~~y~~M~~~R~~e~~~~~~~~~----g~i~~~~~~~GqEa~~~~~~~~l~------~~D~v~~~-yR~~~---~~ 100 (380)
+.++.+-.+..+|-..++......... |.++.+.++. +...++....|+ ..|.|++. |-..+ .+
T Consensus 85 d~~~e~~i~~~iR~~a~~mv~~A~~~~~~~GGH~~s~~S~a--~i~~vl~~~~~r~~~~~~~~D~V~skGHasp~lYA~~ 162 (896)
T PRK13012 85 DLALEERLAAIIRWNALAMVVRANRAYGELGGHIASYASAA--DLFEVGFNHFFRGRDDAGGGDLVYFQPHSAPGIYARA 162 (896)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccHHHH--HHHHHHHHhhcCCCCCCCCCCEEEECcchHHHHHHHH
Confidence 444555455555555554433222112 3333322221 444445555666 56876652 33332 34
Q ss_pred HHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-C-CcccccccccCccHHHHHHHHHhhh-------cCCCceeEEE
Q 016909 101 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-H-NYFTVSSTIATQLPHAVGAAYALKM-------DRKDACAVTY 171 (380)
Q Consensus 101 l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~-~-~~~~~~g~lG~~~p~AvG~A~A~k~-------~~~~~~vv~~ 171 (380)
...|...++-|..|+... .|.++++|+.... + ++..++|+||.|+++|+|.|++.|+ +..+++|+|+
T Consensus 163 ~l~G~l~~e~L~~fR~~~----~~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~ 238 (896)
T PRK13012 163 FLEGRLSEEQLDHFRQEI----GGPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGF 238 (896)
T ss_pred HHcCCCCHHHHHHhcCCC----CCCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEE
Confidence 457876666777776431 1566788876543 3 3677899999999999999999993 4567899999
Q ss_pred eCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccC-CcCHHHHHhhcCeeEEEE---------------
Q 016909 172 FGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRV--------------- 234 (380)
Q Consensus 172 ~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~~-~~~~~~~a~a~G~~~~~V--------------- 234 (380)
+|||+++||.+|||+.+|++++| ++||||++|..++++++..... ..++.++++++||.+++|
T Consensus 239 lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~ 318 (896)
T PRK13012 239 FGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTT 318 (896)
T ss_pred EchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccCccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCc
Confidence 99999999999999999999999 8999999999999999887544 468999999999999999
Q ss_pred -----------e-------------------------------------------CCCHHHHHHHHHHHHHHhhccCCcE
Q 016909 235 -----------D-------------------------------------------GNDALAIYSAVHAAREMAIGEGRPI 260 (380)
Q Consensus 235 -----------d-------------------------------------------G~D~~av~~a~~~A~~~ar~~~gP~ 260 (380)
| |||+.+|++|++.|.+. .++|+
T Consensus 319 ~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~---~~~Pt 395 (896)
T PRK13012 319 GALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRH---KGQPT 395 (896)
T ss_pred cHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC---CCCCE
Confidence 8 99999999999988764 46899
Q ss_pred EEEEEeecCCCCC
Q 016909 261 LIEALTYRVGHHT 273 (380)
Q Consensus 261 lIe~~t~R~~gHs 273 (380)
+|.++|...+|-+
T Consensus 396 vIla~TvkG~G~~ 408 (896)
T PRK13012 396 VILAKTKKGYGMG 408 (896)
T ss_pred EEEEEeeecCCCC
Confidence 9999999999865
|
|
| >KOG0523 consensus Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=205.08 Aligned_cols=218 Identities=22% Similarity=0.227 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCC---------CCcEEEcc--ccc---hHHHHHcCCCHHH
Q 016909 44 DMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQ--YRE---PGVLLWRGFSMQE 109 (380)
Q Consensus 44 ~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~---------~~D~v~~~--yR~---~~~~l~~G~~~~~ 109 (380)
.|-.+|..+-.+...-..|..++..+.. +...+-.-..|+ ..|.++.+ |-+ .++....|....+
T Consensus 13 ~~n~lri~si~~~~~a~sghp~s~~s~A--~~~~vlf~~~mr~~~~~p~~~n~Drfvls~GHa~~llYa~~~l~G~~~~e 90 (632)
T KOG0523|consen 13 AVNNLRILSIDATSAAKSGHPGSPLSLA--PIMHVLFFEVMRYNPADPYWFNRDRFVLSNGHACPLLYAHWHLAGYDREE 90 (632)
T ss_pred HhhhhhhhhHHHHHhhhcCCCCCccccc--hhhhhhhhhheecccCCcCCCCCceEEEeccccchHHHHHHHHhccCcHH
Confidence 4566677777776666677654432211 222222222232 24766665 333 2445567877777
Q ss_pred HHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCC-CceeEEEeCccccCcchHHHHHHH
Q 016909 110 FANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRK-DACAVTYFGDGGTSEGDFHAALNF 188 (380)
Q Consensus 110 ~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~-~~~vv~~~GDG~~~eG~~~Eal~~ 188 (380)
-|.+|+.. |+..++|+..+.+++...+|++|+|++.|+|+|++.|+.+. +..|+|++|||+++||..|||+++
T Consensus 91 dl~~~Rq~------~s~t~ghp~~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~ 164 (632)
T KOG0523|consen 91 DLKNFRQI------GSDTPGHPEPELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSL 164 (632)
T ss_pred HHHHHHhh------CCCCCCCCcccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhh
Confidence 77778764 77788999877778888899999999999999999999887 899999999999999999999999
Q ss_pred HHHcCC-CEEEEEEcCCcceeeecccccCCcCHHH-HHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 189 SAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVV-KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 189 A~~~~L-pvi~vv~NN~~~i~~~~~~~~~~~~~~~-~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
|+.|+| ++|+|.+||+.+++++++..+. .++.+ ++++|||++..|||+|++++.+++.+|.. ..++|++|-++|
T Consensus 165 Ag~l~ldnLVai~D~n~is~~g~t~~~~~-~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~---~k~kpt~i~~~t 240 (632)
T KOG0523|consen 165 AGHLKLDNLVAIYDNNKISIDGATSLGFD-EDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKS---VKGKPTAIKATT 240 (632)
T ss_pred hhhcccCCEEEEEccccccCCCCCccccc-ccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhh---ccCCceeeeeee
Confidence 999999 8999999999999999887764 56776 99999999999999999999999999874 368999999999
Q ss_pred ecCCCCC
Q 016909 267 YRVGHHT 273 (380)
Q Consensus 267 ~R~~gHs 273 (380)
+..+|-.
T Consensus 241 ~~g~G~~ 247 (632)
T KOG0523|consen 241 FIGRGSP 247 (632)
T ss_pred eeecCcc
Confidence 9988743
|
|
| >PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=7e-22 Score=211.78 Aligned_cols=228 Identities=18% Similarity=0.193 Sum_probs=172.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCcccccccchhHHHHHHHHhcCCC------CcEEEccccchH-----
Q 016909 34 SEGVAIKMYNDMVTLQTMDTIFYEAQRQ----GRISFYLTTSGEEAINIASAAAIKN------DDFVVPQYREPG----- 98 (380)
Q Consensus 34 ~~~~l~~~y~~M~~~R~~e~~~~~~~~~----g~i~~~~~~~GqEa~~~~~~~~l~~------~D~v~~~yR~~~----- 98 (380)
.+.++.+.....+|...++......... |.++.+.++ -+...++....|+. +|+|++ .+|+
T Consensus 76 g~~~~e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~--a~i~~vl~~~~~r~~~~~~~~D~V~s--kGHasp~lY 151 (891)
T PRK09405 76 GDLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASS--ATLYEVGFNHFFRAPNEPHGGDLVFF--QGHASPGIY 151 (891)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHH--HHHHHHHHHhhCCCCCCCCCCCEEEE--CchHHHHHH
Confidence 4556666667777766665554332211 333222221 23344455556764 687774 4553
Q ss_pred -HHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CC-cccccccccCccHHHHHHHHHhhh-------cCCCcee
Q 016909 99 -VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HN-YFTVSSTIATQLPHAVGAAYALKM-------DRKDACA 168 (380)
Q Consensus 99 -~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~-~~-~~~~~g~lG~~~p~AvG~A~A~k~-------~~~~~~v 168 (380)
.+...|...++-|..|+.. +.|+++++|+.... ++ ....++++|.|+++|+|.|++.|+ ++.+++|
T Consensus 152 A~~~l~G~l~~e~L~~fR~~----~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv 227 (891)
T PRK09405 152 ARAFLEGRLTEEQLDNFRQE----VDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKV 227 (891)
T ss_pred HHHHHcCCCCHHHHHHhcCC----CCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCceE
Confidence 3445787667777777653 24677888876533 33 566789999999999999999993 5567899
Q ss_pred EEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccC-CcCHHHHHhhcCeeEEEE------------
Q 016909 169 VTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRV------------ 234 (380)
Q Consensus 169 v~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~~-~~~~~~~a~a~G~~~~~V------------ 234 (380)
+|++|||+++||.+|||+.+|++++| ++||||++|..++++++..... ..++.++++++||.++.|
T Consensus 228 ~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~ 307 (891)
T PRK09405 228 WAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAK 307 (891)
T ss_pred EEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchhhhcc
Confidence 99999999999999999999999999 8999999999999999886433 578999999999999999
Q ss_pred --------------e-------------------------------------------CCCHHHHHHHHHHHHHHhhccC
Q 016909 235 --------------D-------------------------------------------GNDALAIYSAVHAAREMAIGEG 257 (380)
Q Consensus 235 --------------d-------------------------------------------G~D~~av~~a~~~A~~~ar~~~ 257 (380)
| |||+.+|++|++.|.+. .+
T Consensus 308 d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~---~~ 384 (891)
T PRK09405 308 DTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEH---KG 384 (891)
T ss_pred CCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhC---CC
Confidence 4 99999999999988864 47
Q ss_pred CcEEEEEEeecCCCC
Q 016909 258 RPILIEALTYRVGHH 272 (380)
Q Consensus 258 gP~lIe~~t~R~~gH 272 (380)
+|++|.++|...+|.
T Consensus 385 ~PtvIia~TvkG~G~ 399 (891)
T PRK09405 385 QPTVILAKTIKGYGM 399 (891)
T ss_pred CCEEEEEeceecCCC
Confidence 899999999999997
|
|
| >PLN02582 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=207.17 Aligned_cols=229 Identities=14% Similarity=0.157 Sum_probs=161.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCC-CCcEEEcc--ccchHHHHHcCC
Q 016909 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQ--YREPGVLLWRGF 105 (380)
Q Consensus 29 ~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~-~~D~v~~~--yR~~~~~l~~G~ 105 (380)
+...++.++|.++-.. +|-+.++. ... ..|.++ +++|-=-+.+++-..|+ +.|.++.. |-..++.+..|.
T Consensus 42 dlk~l~~~~l~~la~~-iR~~ii~~--~~~-~~GH~g---~~Ls~vel~~aL~~~~~~p~Dr~i~s~GH~ay~~~~l~gr 114 (677)
T PLN02582 42 HMKNLSVKELKQLADE-LRSDVIFN--VSK-TGGHLG---SSLGVVELTVALHYVFNAPQDKILWDVGHQSYPHKILTGR 114 (677)
T ss_pred HHhhCCHHHHHHHHHH-HHHHHHHH--HHh-cCCCcC---ccccHHHHHHHHHHhhCCCCCeEEEECcchHHHHHHHHcc
Confidence 4566777877655433 23333333 221 134443 33443323334444454 67988864 666778888886
Q ss_pred CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHH
Q 016909 106 SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHA 184 (380)
Q Consensus 106 ~~~~~l~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~E 184 (380)
.+-|..++. .|+ +++|+... .++....+|++|+++++|+|+|+|.|+++.+..|+|++|||++++|.+||
T Consensus 115 --~~~l~~~r~------~g~-l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~~E 185 (677)
T PLN02582 115 --RDKMHTMRQ------TNG-LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQAYE 185 (677)
T ss_pred --HHHhccccc------CCC-cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhhHHH
Confidence 233555543 244 88888654 36777889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEEEEcCCc-ce--------eeecccc-------cCC---------------------cCHH------
Q 016909 185 ALNFSAVTEAPVIFICRNNGW-AI--------STPISDQ-------FRS---------------------DGAV------ 221 (380)
Q Consensus 185 al~~A~~~~Lpvi~vv~NN~~-~i--------~~~~~~~-------~~~---------------------~~~~------ 221 (380)
|+|.|+.+++|+|+||+||+. ++ +...... ... ..+.
T Consensus 186 aln~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (677)
T PLN02582 186 AMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVDEY 265 (677)
T ss_pred HHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHHHH
Confidence 999999999999999999996 33 1111000 000 0111
Q ss_pred ----------HHHhhcCeeEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016909 222 ----------VKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 222 ----------~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
.++++|||..+ .|||||++++.++++.+.+. ..++|++|.++|-+..|...+
T Consensus 266 ~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~--~~~~P~vihv~T~KGkG~~~a 328 (677)
T PLN02582 266 ARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKST--KTTGPVLIHVVTEKGRGYPYA 328 (677)
T ss_pred hhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEecCCCCCChh
Confidence 24899999966 79999999999999988753 116999999999999887655
|
|
| >PRK05261 putative phosphoketolase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=191.95 Aligned_cols=201 Identities=21% Similarity=0.234 Sum_probs=158.0
Q ss_pred cccccccchhHHHHHHHHhcCCCC--cEEEccccchHH------HHHcC--------CCHHHH-HHHhhcCCCCCCCCCC
Q 016909 64 ISFYLTTSGEEAINIASAAAIKND--DFVVPQYREPGV------LLWRG--------FSMQEF-ANQCFGNKADYGKGRQ 126 (380)
Q Consensus 64 i~~~~~~~GqEa~~~~~~~~l~~~--D~v~~~yR~~~~------~l~~G--------~~~~~~-l~e~~g~~~~~~~G~~ 126 (380)
+|.|-++.|+..+.+++...++.. |.++..--||+. +...| ++.++. |..++-+- +.-.+
T Consensus 49 ~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqf---s~pgg 125 (785)
T PRK05261 49 LGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQF---SFPGG 125 (785)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhc---cCCCC
Confidence 467888999999999999988864 755555556642 22356 333331 33222221 11236
Q ss_pred CccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchH---HHHHHHHHHcCC-CEEEEEEc
Q 016909 127 MPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF---HAALNFSAVTEA-PVIFICRN 202 (380)
Q Consensus 127 ~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~---~Eal~~A~~~~L-pvi~vv~N 202 (380)
+++|+....+|+...+|+||+++++|+|+|+. +++.+|+|++|||++++|.+ |++.+++..+++ +|+.|+++
T Consensus 126 ~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~ 201 (785)
T PRK05261 126 IPSHAAPETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHL 201 (785)
T ss_pred cCCCCCCCCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEe
Confidence 88999877899999999999999999999975 56889999999999999984 888888888888 79999999
Q ss_pred CCcceeeecccc-cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHH-----------Hhhcc---CCcE--EEEEE
Q 016909 203 NGWAISTPISDQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAARE-----------MAIGE---GRPI--LIEAL 265 (380)
Q Consensus 203 N~~~i~~~~~~~-~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~-----------~ar~~---~gP~--lIe~~ 265 (380)
|+|+|++++... .+.+++.+++++|||+++.|||+|+.+++.++++|++ .||.+ .+|+ +|.++
T Consensus 202 Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~r 281 (785)
T PRK05261 202 NGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLR 281 (785)
T ss_pred cCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEE
Confidence 999999999865 3457899999999999999999999999988776654 44445 5899 99999
Q ss_pred eecCCC
Q 016909 266 TYRVGH 271 (380)
Q Consensus 266 t~R~~g 271 (380)
|...+|
T Consensus 282 T~kG~g 287 (785)
T PRK05261 282 TPKGWT 287 (785)
T ss_pred CCccCC
Confidence 988666
|
|
| >PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=167.24 Aligned_cols=173 Identities=18% Similarity=0.108 Sum_probs=139.6
Q ss_pred cccchHHHHHcCCCHH-HHHHHhhcCCC------CCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCC
Q 016909 93 QYREPGVLLWRGFSMQ-EFANQCFGNKA------DYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKD 165 (380)
Q Consensus 93 ~yR~~~~~l~~G~~~~-~~l~e~~g~~~------~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~ 165 (380)
.||||+.+..+|.++. .++.+.+|+.+ ||+.+.++.+|+.. .++...++++|.++++|.|+++|.+..+.+
T Consensus 14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~--~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~ 91 (300)
T PRK11864 14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSP--LTVPVLHTAFAATAAVASGIEEALKARGEK 91 (300)
T ss_pred ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCccc--ccccceeehhhChHHHHHHHHHHHHhhCCC
Confidence 5799999999998887 88888888776 77777666666554 366667899999999999999999887665
Q ss_pred c-eeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccc-----------------cCCcCHHHHHhhc
Q 016909 166 A-CAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ-----------------FRSDGAVVKGRAY 227 (380)
Q Consensus 166 ~-~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~-----------------~~~~~~~~~a~a~ 227 (380)
. .|++++|||++.++.+ |+|+.|+.+++|++|||.||++.+.|-.+.. ....|+.+++.++
T Consensus 92 ~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~ 170 (300)
T PRK11864 92 GVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAH 170 (300)
T ss_pred CcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHc
Confidence 4 4555999999988886 9999999999999999999998665432211 1234788999999
Q ss_pred CeeEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCC
Q 016909 228 GVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHH 272 (380)
Q Consensus 228 G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gH 272 (380)
|.+.+ +++-.|+.++.+++++|++ .+||.+|++.+--..++
T Consensus 171 g~~yVA~~~~~~~~~~~~~i~~A~~----~~Gps~I~~~spC~~~~ 212 (300)
T PRK11864 171 KVPYVATASIAYPEDFIRKLKKAKE----IRGFKFIHLLAPCPPGW 212 (300)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCC
Confidence 99655 6888899999999999987 48999999987544443
|
|
| >cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) | Back alignment and domain information |
|---|
Probab=99.77 E-value=4e-18 Score=152.32 Aligned_cols=114 Identities=22% Similarity=0.273 Sum_probs=93.3
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEc-CCcceeeeccc------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN-NGWAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~N-N~~~i~~~~~~------ 213 (380)
..|+||.++|.|+|+++|. ++++|+|++|||++++. .++|++|++++||+++||.| |+|++......
T Consensus 46 ~~g~mG~~lp~AiGa~la~----~~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~ 119 (172)
T cd02004 46 TFGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFGFS--GMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLG 119 (172)
T ss_pred CCCcccchHHHHHHHHHhC----CCCeEEEEEcchhhcCC--HHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCC
Confidence 4588999999999998884 57899999999999864 47799999999997776655 56877653322
Q ss_pred -----ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 214 -----QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 -----~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
.....++.+++++||+++.+|+ +++++.++++++.+ .++|+|||+++
T Consensus 120 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i 171 (172)
T cd02004 120 LPVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRALA----SGKPALINVII 171 (172)
T ss_pred CceeccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHH----cCCCEEEEEEc
Confidence 1245689999999999999999 78998888888765 47999999976
|
Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity. |
| >cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-18 Score=151.20 Aligned_cols=116 Identities=30% Similarity=0.350 Sum_probs=95.4
Q ss_pred ccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecc------
Q 016909 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS------ 212 (380)
Q Consensus 139 ~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~------ 212 (380)
....|+||+++|.|+|++++. ++++|+|++|||++++ .+++|++|..+++|+++||.||++...+...
T Consensus 42 ~~~~g~~G~~~~~a~Gaa~a~----~~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~ 115 (168)
T cd00568 42 STGFGAMGYGLPAAIGAALAA----PDRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYG 115 (168)
T ss_pred CCCchhhhhhHHHHHHHHHhC----CCCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcC
Confidence 445799999999999999986 4789999999999987 5699999999999999988888754443321
Q ss_pred -----cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 213 -----DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 213 -----~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
......++.+++++||+++++|+ +++++.++++++.+ .++|++||++|
T Consensus 116 ~~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~a~~~a~~----~~~p~~i~v~~ 168 (168)
T cd00568 116 GRVSGTDLSNPDFAALAEAYGAKGVRVE--DPEDLEAALAEALA----AGGPALIEVKT 168 (168)
T ss_pred CCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 22345689999999999999998 68888888877763 68999999975
|
These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. |
| >cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-18 Score=155.43 Aligned_cols=120 Identities=23% Similarity=0.280 Sum_probs=96.9
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeeccc------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|+++++|+++|| +|++|++......
T Consensus 51 ~~g~mG~~lpaaiGa~la~----p~r~vv~i~GDG~f~m~--~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~ 124 (196)
T cd02013 51 SFGNCGYALPAIIGAKAAA----PDRPVVAIAGDGAWGMS--MMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNR 124 (196)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCC
Confidence 3588999999999998884 68899999999999874 456899999999987777 5566776432110
Q ss_pred ----ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016909 214 ----QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 214 ----~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 269 (380)
.....|+++.|++||+++++|+ ++.++.+++++|++.+|. ++|+|||+.+.+.
T Consensus 125 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~-~~p~liev~v~~~ 181 (196)
T cd02013 125 FVGTELESESFAKIAEACGAKGITVD--KPEDVGPALQKAIAMMAE-GKTTVIEIVCDQE 181 (196)
T ss_pred cccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhcCCC-CCeEEEEEEeCcc
Confidence 1234789999999999999999 899999999999875443 7899999998653
|
Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity. |
| >PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=156.07 Aligned_cols=217 Identities=18% Similarity=0.175 Sum_probs=144.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcccccccchhHHHHHHHHhcCC-CCcEEEc--cccchHHHHHcC
Q 016909 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEA-QRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLWRG 104 (380)
Q Consensus 29 ~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~-~~~g~i~~~~~~~GqEa~~~~~~~~l~-~~D~v~~--~yR~~~~~l~~G 104 (380)
+...++.++|..+-..+ |.+ +... .+.| +.+.++.|---..+++-..++ |.|.++. .|....|-+..|
T Consensus 9 dlk~ls~~eL~~La~ei---R~~---ii~~vs~~G--GHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLTG 80 (270)
T PF13292_consen 9 DLKKLSIEELEQLAQEI---REF---IIETVSKTG--GHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILTG 80 (270)
T ss_dssp HHTTS-GGGHHHHHHHH---HHH---HHHHCTCCC--STHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCTT
T ss_pred HHHcCCHHHHHHHHHHH---HHH---HHHHHhhcC--CCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccchhhhccC
Confidence 45677888887765544 433 2222 1222 566778887777788888887 7898886 699999999888
Q ss_pred CCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHH
Q 016909 105 FSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFH 183 (380)
Q Consensus 105 ~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~ 183 (380)
.. +.|..++.. .|+++.+...+ +.-....|+-+.++++|+|+|.|.++.+.+..||+++|||++.-|+.+
T Consensus 81 R~--~~f~TlRq~-------gGlSGF~~r~ES~~D~f~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~ 151 (270)
T PF13292_consen 81 RR--DRFHTLRQY-------GGLSGFPKRSESEYDAFGAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMAF 151 (270)
T ss_dssp TC--CCGGGTTST-------TS--SS--TTT-TT--S--SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHHH
T ss_pred cH--HHhchhhhc-------CCcCCCCCcccCCCCcccCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHHH
Confidence 63 345555542 33444443322 333456899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEEEEcCCcceeeecccc-------cC--------------------C-------cC-H----HHHH
Q 016909 184 AALNFSAVTEAPVIFICRNNGWAISTPISDQ-------FR--------------------S-------DG-A----VVKG 224 (380)
Q Consensus 184 Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~-------~~--------------------~-------~~-~----~~~a 224 (380)
||||-|+..+-++|+|+++|+.+|+...... .. . .+ + ...+
T Consensus 152 EALN~~g~~~~~liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~s~K~~~~~lF 231 (270)
T PF13292_consen 152 EALNNAGHLKSNLIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKESLKGFSPNLF 231 (270)
T ss_dssp HHHHHHHHHT-SEEEEEEE-SBSSSB--SSHCCC-------------------------------------------CCC
T ss_pred HHHHHHHhcCCCEEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhHHHH
Confidence 9999999999999999999999887543200 00 0 00 0 1236
Q ss_pred hhcCeeEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 225 RAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 225 ~a~G~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
+.+|+..+- |||||..++.++++.+.+ -+||+||.++|
T Consensus 232 e~LG~~Y~GPiDGHdl~~Li~~l~~~K~----~~gPvllHV~T 270 (270)
T PF13292_consen 232 EELGFDYIGPIDGHDLEELIEVLENAKD----IDGPVLLHVIT 270 (270)
T ss_dssp HHCT-EEEEEEETT-HHHHHHHHHHHCC----SSSEEEEEEE-
T ss_pred HHcCCeEEeccCCCCHHHHHHHHHHHhc----CCCCEEEEEeC
Confidence 777998886 899999999999988765 58999999987
|
|
| >cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.9e-18 Score=153.77 Aligned_cols=121 Identities=22% Similarity=0.239 Sum_probs=96.9
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. +++.|||++|||+|+.. ..+|.+|++++||+++||.||+ |++......
T Consensus 55 ~~GsmG~~lpaaiGa~la~----p~~~vv~i~GDG~f~m~--~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~ 128 (202)
T cd02006 55 QAGPLGWTVPAALGVAAAD----PDRQVVALSGDYDFQFM--IEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDY 128 (202)
T ss_pred CccchhhhhHHHHhHHhhC----CCCeEEEEEeChHhhcc--HHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCcc
Confidence 4589999999999999884 68899999999999865 3669999999999888777665 665321100
Q ss_pred --------------ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016909 214 --------------QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 214 --------------~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 269 (380)
.....|+++.|++||+++.+|+ ++.++.+++++|++.+++.++|+|||+.+.+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~~p~liev~i~~~ 196 (202)
T cd02006 129 QVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAILERV 196 (202)
T ss_pred ccccccccccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHhcccCCCcEEEEEEeccc
Confidence 0013689999999999999998 89999999999987544457999999998543
|
E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors. |
| >cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-17 Score=149.59 Aligned_cols=112 Identities=29% Similarity=0.305 Sum_probs=93.3
Q ss_pred ccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc--------
Q 016909 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD-------- 213 (380)
Q Consensus 143 g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~-------- 213 (380)
|+||.++|.|+|+++|. ++++|+|++|||+++++. ++|.+|.++++|+++||.||+ |++......
T Consensus 49 g~mG~~lp~aiGaala~----~~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~ 122 (178)
T cd02002 49 GGLGWGLPAAVGAALAN----PDRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPG 122 (178)
T ss_pred ccccchHHHHHHHHhcC----CCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCcc
Confidence 89999999999999985 578999999999998774 679999999999988888875 877542111
Q ss_pred ---------ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 214 ---------QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 ---------~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
.....++.+++++||+++++|+ +++++.+++++|++ .++|++||+++
T Consensus 123 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~vi~v~v 178 (178)
T cd02002 123 ENAPDGLDLLDPGIDFAAIAKAFGVEAERVE--TPEELDEALREALA----EGGPALIEVVV 178 (178)
T ss_pred cccccccccCCCCCCHHHHHHHcCCceEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 1134689999999999999999 58999888888875 57999999864
|
P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors. |
| >COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=162.84 Aligned_cols=226 Identities=16% Similarity=0.171 Sum_probs=166.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCcccccccchhHHHHHHHHhcCC-CCcEEEc--cccchHHHHH
Q 016909 27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQ-RQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLW 102 (380)
Q Consensus 27 ~~~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~-~~g~i~~~~~~~GqEa~~~~~~~~l~-~~D~v~~--~yR~~~~~l~ 102 (380)
+.+...+|.++|..+-+.+ |.+ +.... ..| |...++.|---..+++-..++ |.|.++. .|....|-+.
T Consensus 11 P~dLk~ls~~eL~~La~Ei---R~~---li~~vS~~G--GHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKiL 82 (627)
T COG1154 11 PADLKKLSIEELPQLADEI---REF---LLEVVSATG--GHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKIL 82 (627)
T ss_pred HHHHhhCCHHHHHHHHHHH---HHH---HHHHhccCC--CccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccchhHHh
Confidence 3456678888887765543 322 22222 233 455677787667778877776 7888875 6999999999
Q ss_pred cCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcch
Q 016909 103 RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD 181 (380)
Q Consensus 103 ~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~ 181 (380)
.|.. +-|..++.+ .++++.+...+ ..-+..+|+-+++++.|+|+|.|..+++.++.||+++|||++.-|+
T Consensus 83 TGR~--e~f~tlRq~-------~GlsGf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~Gm 153 (627)
T COG1154 83 TGRR--EQFDTLRQK-------DGLSGFPKREESEHDWFGVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGM 153 (627)
T ss_pred cCch--hhcchhhhc-------CCCCCCCCcccCCCcccccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchH
Confidence 8864 566666643 23333333222 2345568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HcCCCEEEEEEcCCcceeeecccc-------cC----------C------------------cC------
Q 016909 182 FHAALNFSA-VTEAPVIFICRNNGWAISTPISDQ-------FR----------S------------------DG------ 219 (380)
Q Consensus 182 ~~Eal~~A~-~~~Lpvi~vv~NN~~~i~~~~~~~-------~~----------~------------------~~------ 219 (380)
.+||||-|+ ..+-|+|+|+++|+.+|+.+.... .. . .+
T Consensus 154 A~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~ 233 (627)
T COG1154 154 AFEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLL 233 (627)
T ss_pred HHHHHhhhhhccCCCEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhccc
Confidence 999999998 445689999999999998654210 00 0 00
Q ss_pred -HHHHHhhcCeeEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCC
Q 016909 220 -AVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 273 (380)
Q Consensus 220 -~~~~a~a~G~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 273 (380)
..-.++.+|+..+- +||||.+++..+++.+.+ .++|+||.+.|-...|=.
T Consensus 234 ~~~~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd----~~gPvllHv~T~KGKGY~ 285 (627)
T COG1154 234 VPGTLFEELGFNYIGPIDGHNLEELIPTLKNAKD----LKGPVLLHVVTKKGKGYK 285 (627)
T ss_pred CchhhHHHhCCeeECCcCCCCHHHHHHHHHHHhc----CCCCEEEEEEecCCCCCC
Confidence 01267889999886 899999999999988776 589999999998776643
|
|
| >cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.6e-17 Score=145.85 Aligned_cols=116 Identities=24% Similarity=0.308 Sum_probs=93.2
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec--------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~-------- 211 (380)
..|+||+++|.|+|+++|. ++++|+|++|||+++.+ +.| |.+|.++++|+++||.||+ |++....
T Consensus 49 ~~g~mG~~~~~aiGa~~a~----~~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~ 122 (178)
T cd02014 49 LLATMGNGLPGAIAAKLAY----PDRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPE 122 (178)
T ss_pred CCchhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCc
Confidence 4589999999999998874 67899999999999877 455 8889999999888887775 7763211
Q ss_pred -ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 -SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 -~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.......|+.+.+++||+++++|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 123 ~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~~l~~a~~----~~~p~liev~~~~ 174 (178)
T cd02014 123 FGVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEALA----ADGPVVIDVVTDP 174 (178)
T ss_pred eeccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 111234689999999999999998 88888888887765 5799999999854
|
POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors. |
| >PRK06163 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-16 Score=146.13 Aligned_cols=130 Identities=20% Similarity=0.166 Sum_probs=100.4
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHc-CCCEEEEEEcC-Ccceeeeccc-ccCCc
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-EAPVIFICRNN-GWAISTPISD-QFRSD 218 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~-~Lpvi~vv~NN-~~~i~~~~~~-~~~~~ 218 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|+++ ++|+++||.|| +|++...... .....
T Consensus 56 ~GsMG~glpaAiGaalA~----p~r~Vv~i~GDG~f~m~--~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~~ 129 (202)
T PRK06163 56 LGSMGLAFPIALGVALAQ----PKRRVIALEGDGSLLMQ--LGALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQTV 129 (202)
T ss_pred ecccccHHHHHHHHHHhC----CCCeEEEEEcchHHHHH--HHHHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCCC
Confidence 689999999999999984 67899999999999753 4679999877 68988777777 5776432211 12346
Q ss_pred CHHHHHhhcCee-EEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHH
Q 016909 219 GAVVKGRAYGVR-SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIE 288 (380)
Q Consensus 219 ~~~~~a~a~G~~-~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~ 288 (380)
|+.+.|++||++ +++|+ +..++..+++++++ .++|+|||+++.+.. +-|..+|++.|.+
T Consensus 130 Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~~~-----~~~~~~~~~~~~~ 189 (202)
T PRK06163 130 DVVAIARGAGLENSHWAA--DEAHFEALVDQALS----GPGPSFIAVRIDDKP-----GVGTTERDPAQIR 189 (202)
T ss_pred CHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCC-----CCCCCCCCHHHHH
Confidence 899999999998 67888 99999999999875 489999999986432 2244557776654
|
|
| >cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-16 Score=143.61 Aligned_cols=116 Identities=25% Similarity=0.326 Sum_probs=91.7
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec--------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~-------- 211 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|+.. ..+|.+|+++++|+++||.||+ |++....
T Consensus 48 ~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~ 121 (186)
T cd02015 48 GLGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQMN--IQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGR 121 (186)
T ss_pred CccchhchHHHHHHHHHhC----CCCeEEEEEcccHHhcc--HHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCc
Confidence 3589999999999999884 57899999999999853 4669999999999888776666 4432210
Q ss_pred ---ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 ---SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ---~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.......|+++.|++||+++++|+ +.+++.+++++|++ .++|+|||+.+.+
T Consensus 122 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~ 175 (186)
T cd02015 122 YSHTTLDSNPDFVKLAEAYGIKGLRVE--KPEELEAALKEALA----SDGPVLLDVLVDP 175 (186)
T ss_pred eeeccCCCCCCHHHHHHHCCCceEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 011234689999999999999999 68888888877764 5899999999954
|
AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD. |
| >cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE) | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.5e-16 Score=141.88 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=92.2
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCC-CEEE-EEEcCCcceeeeccccc-CCc
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIF-ICRNNGWAISTPISDQF-RSD 218 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~-vv~NN~~~i~~~~~~~~-~~~ 218 (380)
.|+||+++|.|+|+++|.+ ++|+|++|||+++++ ..++.+|.++++ |+++ |++||+|++........ ...
T Consensus 41 ~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~m~--~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~~~ 113 (179)
T cd03372 41 LGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLLMN--LGALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGKKT 113 (179)
T ss_pred ccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHHhC--HHHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCCCC
Confidence 7999999999999999853 789999999999754 357888999996 6555 56777788764332222 256
Q ss_pred CHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016909 219 GAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 219 ~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 270 (380)
++.++|++||+++.+|+| +++++.+++++++ ++|++||+.|.+..
T Consensus 114 d~~~lA~a~G~~~~~v~~-~~~el~~al~~a~------~gp~lIev~~~~~~ 158 (179)
T cd03372 114 DLEAVAKACGLDNVATVA-SEEAFEKAVEQAL------DGPSFIHVKIKPGN 158 (179)
T ss_pred CHHHHHHHcCCCeEEecC-CHHHHHHHHHHhc------CCCEEEEEEEcCCC
Confidence 899999999999999987 7888888887775 58999999996543
|
M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors. |
| >cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-16 Score=146.01 Aligned_cols=117 Identities=17% Similarity=0.202 Sum_probs=92.7
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeeccc------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|+++. .+|.+|++++||+++|| +||+|++......
T Consensus 46 ~~gsmG~~lpaAiGa~la~----p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~ 119 (205)
T cd02003 46 GYSCMGYEIAAGLGAKLAK----PDREVYVLVGDGSYLMLH--SEIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSGS 119 (205)
T ss_pred CcchhhhHHHHHHHHHHhC----CCCeEEEEEccchhhccH--HHHHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCcc
Confidence 4588999999999999884 688999999999998753 56999999999965555 5555765321100
Q ss_pred -----------------ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016909 214 -----------------QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 214 -----------------~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 269 (380)
.....|+.++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIeV~v~~~ 186 (205)
T cd02003 120 FGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAKA----SDRTTVIVIKTDPK 186 (205)
T ss_pred ccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeecc
Confidence 0124689999999999999997 99999999998875 48999999999653
|
viciae IolD. IolD plays an important role in myo-inositol catabolism. |
| >cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-16 Score=141.28 Aligned_cols=117 Identities=21% Similarity=0.139 Sum_probs=92.0
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeeccc------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. +++.||+++|||++++.. +++|.+|+++++|+++||.|| .|++......
T Consensus 49 ~~g~mG~gl~~AiGa~la~----p~~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~ 123 (178)
T cd02008 49 TCTCMGASIGVAIGMAKAS----EDKKVVAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKT 123 (178)
T ss_pred ccccCccHHHHHhhHHhhC----CCCCEEEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCccc
Confidence 5789999999999999985 578999999999996432 578999999999977666555 4655432211
Q ss_pred ---ccCCcCHHHHHhhcCeeEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 214 ---QFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 ---~~~~~~~~~~a~a~G~~~~~V-dG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
.....|+.+++++||+++++| ++++..++.+++++|++ .++|+||+++.
T Consensus 124 ~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~----~~gp~lI~v~~ 176 (178)
T cd02008 124 LTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALA----VPGVSVIIAKR 176 (178)
T ss_pred ccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 112468999999999999998 67888887788888875 47999999864
|
IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA. |
| >TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.6e-16 Score=141.15 Aligned_cols=113 Identities=19% Similarity=0.236 Sum_probs=90.8
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCC-cceeeeccccc-CCc
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNG-WAISTPISDQF-RSD 218 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~-~~i~~~~~~~~-~~~ 218 (380)
.|++|.++|.|+|+++|. +++|||++|||+|+++. ++|.+|+++++ |+++||.||+ |++........ ...
T Consensus 41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~m~~--~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~ 113 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLLMNL--GVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRT 113 (181)
T ss_pred ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHHhhh--hHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCC
Confidence 789999999999999984 67899999999998653 67999999995 9888876665 77654221111 256
Q ss_pred CHHHHHhhcCeeEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 219 GAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 219 ~~~~~a~a~G~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
|+++.|++||+++.+ |+ ++.++.++++ +++ .++|+||++.+.+
T Consensus 114 d~~~lA~a~G~~~~~~v~--~~~~l~~al~-a~~----~~~p~li~v~~~~ 157 (181)
T TIGR03846 114 DLELVAKAAGIRNVEKVA--DEEELRDALK-ALA----MKGPTFIHVKVKP 157 (181)
T ss_pred CHHHHHHHCCCCeEEEeC--CHHHHHHHHH-HHc----CCCCEEEEEEeCC
Confidence 899999999999998 76 8999988885 553 5799999999854
|
Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363). |
| >cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.8e-16 Score=140.65 Aligned_cols=118 Identities=20% Similarity=0.137 Sum_probs=93.3
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCC-cceeeecccccCCc
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNG-WAISTPISDQFRSD 218 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~-~~i~~~~~~~~~~~ 218 (380)
++|+||+++|.|+|+++|. +++.|||++|||+|+. ..++|.+++++++ |+++||.||+ |++...........
T Consensus 46 ~~g~mG~~lpaAiGaala~----p~~~Vv~i~GDG~f~m--~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~ 119 (188)
T cd03371 46 TVGSMGHASQIALGIALAR----PDRKVVCIDGDGAALM--HMGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDV 119 (188)
T ss_pred ecCccccHHHHHHHHHHhC----CCCcEEEEeCCcHHHh--hccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCC
Confidence 3499999999999999985 5789999999999974 3467999999997 6666665554 66543222222346
Q ss_pred CHHHHHhhcCeeE-EEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016909 219 GAVVKGRAYGVRS-IRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 219 ~~~~~a~a~G~~~-~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 270 (380)
++++.|++||+++ .+|+ ++.++.++++++++ .++|+|||+.+-+..
T Consensus 120 d~~~~A~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~~~~~~ 166 (188)
T cd03371 120 SLPAIAKACGYRAVYEVP--SLEELVAALAKALA----ADGPAFIEVKVRPGS 166 (188)
T ss_pred CHHHHHHHcCCceEEecC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCC
Confidence 8999999999997 5788 89999999998875 479999999996654
|
PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors. |
| >cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-16 Score=140.61 Aligned_cols=113 Identities=13% Similarity=0.057 Sum_probs=91.6
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHc-CCCEEEEE-EcCCcceeeecccccCCcC
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-EAPVIFIC-RNNGWAISTPISDQFRSDG 219 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~-~Lpvi~vv-~NN~~~i~~~~~~~~~~~~ 219 (380)
.|+||.++|.|+|+++|. +++|||++|||+|+.. ..+|.+++++ ++|+++|| +|+.|++...........|
T Consensus 41 ~gsmG~~lp~AiGa~~a~-----~~~Vv~i~GDG~f~m~--~~el~t~~~~~~~~i~~vV~nN~~~g~~~~~~~~~~~~d 113 (157)
T cd02001 41 LGSMGLAGSIGLGLALGL-----SRKVIVVDGDGSLLMN--PGVLLTAGEFTPLNLILVVLDNRAYGSTGGQPTPSSNVN 113 (157)
T ss_pred ecchhhHHHHHHHHHhcC-----CCcEEEEECchHHHhc--ccHHHHHHHhcCCCEEEEEEeCccccccCCcCCCCCCCC
Confidence 799999999999999985 2789999999999643 3558899998 59987777 5555776542222223579
Q ss_pred HHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 220 AVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 220 ~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
+.+.|++||+++++|+ +++++.++++++++ .++|++|++.+.
T Consensus 114 ~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~vi~v~i~ 155 (157)
T cd02001 114 LEAWAAACGYLVLSAP--LLGGLGSEFAGLLA----TTGPTLLHAPIA 155 (157)
T ss_pred HHHHHHHCCCceEEcC--CHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence 9999999999999997 89999999999886 479999999873
|
Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors. |
| >cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-16 Score=142.14 Aligned_cols=116 Identities=20% Similarity=0.288 Sum_probs=93.6
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec--------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~-------- 211 (380)
..|+||+++|.|+|+++|. +++.|||++|||+|+.. ..+|.+|+++++|+++||.|| +|++....
T Consensus 46 ~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~m~--~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~ 119 (177)
T cd02010 46 GLATMGVALPGAIGAKLVY----PDRKVVAVSGDGGFMMN--SQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRD 119 (177)
T ss_pred CChhhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhH--HHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCc
Confidence 4589999999999999984 67899999999999754 467999999999977766555 57654211
Q ss_pred -ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 -SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 -~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.......|+++.+++||+++++|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 120 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~ 171 (177)
T cd02010 120 SGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERALA----ADGVHVIDCPVDY 171 (177)
T ss_pred ccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecc
Confidence 111134689999999999999998 99999999999876 4899999999854
|
ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity. |
| >PLN02225 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-15 Score=161.32 Aligned_cols=223 Identities=10% Similarity=0.044 Sum_probs=162.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcccccccchhHHHHHHHHhcCC-CCcEEEc--cccchHHHHHcC
Q 016909 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEA-QRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLWRG 104 (380)
Q Consensus 29 ~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~-~~~g~i~~~~~~~GqEa~~~~~~~~l~-~~D~v~~--~yR~~~~~l~~G 104 (380)
+.++|+.++|..+-..+ |.+ .+... .+.| |...+++|---..+++-..++ |.|.++. .|....|-+..|
T Consensus 87 dlk~L~~~eL~~La~Ei---R~~--li~~v~s~~G--GHl~snLGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~HKiLTG 159 (701)
T PLN02225 87 QLKNLSVKELKLLADEI---RTE--LHSVLWKKTQ--KSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQTYAHKVLTR 159 (701)
T ss_pred HHhhCCHHHHHHHHHHH---HHH--HHHHhhcccC--CCcCCCccHHHHHHHHHHHhCCCCCceeeccccccchhhHhcC
Confidence 45667777776665543 433 22222 1333 456678887777788888887 7898886 699999999988
Q ss_pred CCHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHH
Q 016909 105 FSMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFH 183 (380)
Q Consensus 105 ~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~ 183 (380)
.. +-|.. +. -.++++.+... +..-....|+-+.+++.|+|+|.|..+++.+..||+++|||++.-|+.+
T Consensus 160 R~--~~f~~-Rq-------~~GlsGf~~r~ES~~D~f~~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGaltgGma~ 229 (701)
T PLN02225 160 RW--SAIPS-RQ-------KNGISGVTSQLESEYDSFGTGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATITAGQAY 229 (701)
T ss_pred Ch--hhcCc-cc-------cCCcCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhhhHH
Confidence 63 22331 21 12333333322 2334556899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEEEEcCCcceeee--------ccc--------------------------ccC--CcCH-------
Q 016909 184 AALNFSAVTEAPVIFICRNNGWAISTP--------ISD--------------------------QFR--SDGA------- 220 (380)
Q Consensus 184 Eal~~A~~~~Lpvi~vv~NN~~~i~~~--------~~~--------------------------~~~--~~~~------- 220 (380)
||||-|+..+-|+|+|+++|+.+|+.+ ... ..+ ...+
T Consensus 230 EaLN~~g~~~~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (701)
T PLN02225 230 EAMSNAGYLDSNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAKVDEY 309 (701)
T ss_pred HHHhhhhccCCCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999999999999877 110 000 0000
Q ss_pred --------H-HHHhhcCeeEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016909 221 --------V-VKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 221 --------~-~~a~a~G~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 270 (380)
. .+++.+|+..+- |||||++++..+++.+.+. ..++|+||.++|-...
T Consensus 310 ~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~--~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 310 ARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSL--DSMGPVLVHVITEENR 367 (701)
T ss_pred hhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcC--CCCCCEEEEEEecCCC
Confidence 1 367889998886 8999999999999988764 1249999999997665
|
|
| >cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.4e-16 Score=138.96 Aligned_cols=117 Identities=23% Similarity=0.276 Sum_probs=92.9
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeeccc------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. +++.|+|++|||+|+.. ++| |.+|+++++| +++|++||+|++......
T Consensus 48 ~~g~mG~~l~~aiGaala~----~~~~vv~i~GDG~f~~~-~~e-l~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~~ 121 (183)
T cd02005 48 LWGSIGYSVPAALGAALAA----PDRRVILLVGDGSFQMT-VQE-LSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYN 121 (183)
T ss_pred chhhHhhhHHHHHHHHHhC----CCCeEEEEECCchhhcc-HHH-HHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCcc
Confidence 4589999999999999985 56899999999999763 556 8899999997 555666777886542211
Q ss_pred ccCCcCHHHHHhhcC----eeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 214 QFRSDGAVVKGRAYG----VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ~~~~~~~~~~a~a~G----~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.....++.+.|++|| +++.+|+ ++.++.++++++++. .++|+|||+.+.|
T Consensus 122 ~~~~~d~~~ia~a~G~~~~~~~~~v~--~~~el~~al~~a~~~---~~~p~liev~~~~ 175 (183)
T cd02005 122 DIANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALFN---RDKLSLIEVILPK 175 (183)
T ss_pred cCCCCCHHHHHHHhCCCccccEEEec--CHHHHHHHHHHHHhc---CCCcEEEEEEcCc
Confidence 122468999999999 6888887 899999999988861 4799999999855
|
PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors. |
| >PRK07524 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-15 Score=159.82 Aligned_cols=118 Identities=27% Similarity=0.332 Sum_probs=97.7
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceee---------ec
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIST---------PI 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~---------~~ 211 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|+++ . .+|.+|++++||+++||.|| +|++.. +.
T Consensus 406 ~g~mG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~-~el~ta~~~~lpi~~vV~NN~~~g~i~~~~~~~~~~~~ 479 (535)
T PRK07524 406 YGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQFT-L-PELASAVEADLPLIVLLWNNDGYGEIRRYMVARDIEPV 479 (535)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-H-HHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhcCCcc
Confidence 589999999999999984 78899999999999754 3 45999999999988877777 676432 11
Q ss_pred ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCC
Q 016909 212 SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 271 (380)
Q Consensus 212 ~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~g 271 (380)
.......|+.+.|++||+++++|+ +++++.++++++++ .++|+|||++++|+.+
T Consensus 480 ~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~~~ 533 (535)
T PRK07524 480 GVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAFA----RPGPTLIEVDQACWFA 533 (535)
T ss_pred ccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEECCcccc
Confidence 112235689999999999999998 99999999998875 5899999999999875
|
|
| >PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.5e-16 Score=134.98 Aligned_cols=114 Identities=28% Similarity=0.394 Sum_probs=92.1
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecc-------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~------- 212 (380)
..++||.++|.|+|+++| .++++||+++|||+|... ..+|.+|.++++|+++||.||+ |++.....
T Consensus 26 ~~g~mG~~~~~aiGa~~a----~p~~~vv~i~GDG~f~~~--~~el~ta~~~~~~v~~vv~nN~~~~~~~~~~~~~~~~~ 99 (153)
T PF02775_consen 26 GFGSMGYALPAAIGAALA----RPDRPVVAITGDGSFLMS--LQELATAVRYGLPVVIVVLNNGGYGMTGGQQTPFGGGR 99 (153)
T ss_dssp TTT-TTTHHHHHHHHHHH----STTSEEEEEEEHHHHHHH--GGGHHHHHHTTSSEEEEEEESSBSHHHHHHHHHTTSTC
T ss_pred CccccCCHHHhhhHHHhh----cCcceeEEecCCcceeec--cchhHHHhhccceEEEEEEeCCcceEeccccccCcCcc
Confidence 578999999999999997 478999999999999754 4669999999999777776665 55432211
Q ss_pred ---cc---cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 213 ---DQ---FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 213 ---~~---~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
.. ....++.+.+++||+++.+|+..|++++.+++++|++ .++|+|||+
T Consensus 100 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~----~~gp~vIeV 153 (153)
T PF02775_consen 100 FSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREALE----SGGPAVIEV 153 (153)
T ss_dssp HHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHH----SSSEEEEEE
T ss_pred cccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHh----CCCcEEEEc
Confidence 11 4456899999999999999996666999999999985 589999996
|
It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A .... |
| >PRK08327 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=159.40 Aligned_cols=119 Identities=23% Similarity=0.285 Sum_probs=99.7
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeee----------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTP---------- 210 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~---------- 210 (380)
.|+||+++|.|+|+++| .++++|||++|||+|+++...+++++|+++++|+++||.|| +|++...
T Consensus 429 ~gsmG~~lp~aiGa~la----~p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~ 504 (569)
T PRK08327 429 AGGLGWALGAALGAKLA----TPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGY 504 (569)
T ss_pred CCCCCcchHHHHHHhhc----CCCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCcccc
Confidence 58999999999999887 47899999999999998765567999999999988888777 5765321
Q ss_pred ------c-cccc-CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 211 ------I-SDQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 211 ------~-~~~~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
. .... +..|+++.+++||+++++|+ +++++..++++|++.+++++||+|||+.+
T Consensus 505 ~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v 566 (569)
T PRK08327 505 AARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIV 566 (569)
T ss_pred cccccccccccCCCCCCHHHHHHhCCCCceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 0 1111 45689999999999999998 99999999999998777778999999986
|
|
| >cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-15 Score=136.41 Aligned_cols=112 Identities=24% Similarity=0.227 Sum_probs=89.7
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc-------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------- 213 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~------- 213 (380)
.+.+|+++|.|+|+++|. +++|||++|||+|+.. ..+|.+|.++++|+++||.||+ |++......
T Consensus 50 ~g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~m~--~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~~ 122 (175)
T cd02009 50 ASGIDGTLSTALGIALAT-----DKPTVLLTGDLSFLHD--LNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDEF 122 (175)
T ss_pred ccchhhHHHHHHHHHhcC-----CCCEEEEEehHHHHHh--HHHHHhccccCCCeEEEEEECCCCchheeccCCcccchh
Confidence 378999999999999984 6789999999999754 4679999999999777666665 664321110
Q ss_pred --cc---CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 214 --QF---RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 --~~---~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
.. ...|+.+.|++||+++.+|+ +++++.++++++++ .++|+|||+.+
T Consensus 123 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~v 174 (175)
T cd02009 123 ERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALA----QDGPHVIEVKT 174 (175)
T ss_pred hhhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 11 24689999999999999998 89999999998875 47999999976
|
SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity. |
| >TIGR01504 glyox_carbo_lig glyoxylate carboligase | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-15 Score=159.36 Aligned_cols=119 Identities=21% Similarity=0.242 Sum_probs=95.4
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc-------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------- 213 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~------- 213 (380)
.|+||+++|.|+|+++|. ++++||+++|||+|++. ..+|.+|.+|+||+++||.||+ |++......
T Consensus 417 ~gsmG~glpaaiGa~lA~----pdr~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~iV~NN~~yg~i~~~q~~~~~~~~ 490 (588)
T TIGR01504 417 AGPLGWTIPAALGVCAAD----PKRNVVALSGDYDFQFM--IEELAVGAQHNIPYIHVLVNNAYLGLIRQAQRAFDMDYC 490 (588)
T ss_pred cccccchHhHHHhhhhhC----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhccccc
Confidence 588999999999999884 68899999999999865 4679999999999777666665 764321100
Q ss_pred ---cc----------CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 214 ---QF----------RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ---~~----------~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.. ...|+.+.|++||+++.+|+ +++++.+++++|++.+++.++|+|||+.+.+
T Consensus 491 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~ 556 (588)
T TIGR01504 491 VQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEEIAPAFEQAKALMAEHRVPVVVEVILER 556 (588)
T ss_pred ceeeccccccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 00 13689999999999999998 9999999999998644345899999999844
|
Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. |
| >PRK07092 benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=6e-15 Score=153.92 Aligned_cols=113 Identities=29% Similarity=0.372 Sum_probs=93.6
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec---------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~--------- 211 (380)
.|+||+++|.|+|+++|. ++++|+|++|||+|+++ .++|++|.+++||+++||.||+ |++....
T Consensus 406 ~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~~~ 479 (530)
T PRK07092 406 SGGLGYGLPAAVGVALAQ----PGRRVIGLIGDGSAMYS--IQALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVRDV 479 (530)
T ss_pred CCcccchHHHHHHHHHhC----CCCeEEEEEeCchHhhh--HHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCCCC
Confidence 689999999999999984 57899999999999976 3789999999999888887777 8763211
Q ss_pred -ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 212 -SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 212 -~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
.......++.+++++||+++++|+ ++.++.++++++++ .++|+|||+.|
T Consensus 480 ~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~~ 529 (530)
T PRK07092 480 PGLDLPGLDFVALARGYGCEAVRVS--DAAELADALARALA----ADGPVLVEVEV 529 (530)
T ss_pred CCCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEc
Confidence 111235689999999999999998 78888888877764 68999999986
|
|
| >PRK06154 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.4e-15 Score=154.83 Aligned_cols=119 Identities=24% Similarity=0.231 Sum_probs=95.4
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|++++||+++||.||+ |++......
T Consensus 429 ~~gsmG~glpaaiGa~la~----p~r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~ 502 (565)
T PRK06154 429 KTTQLGYGLGLAMGAKLAR----PDALVINLWGDAAFGMT--GMDFETAVRERIPILTILLNNFSMGGYDKVMPVSTTKY 502 (565)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECCccceeehhhhhhcCcc
Confidence 3589999999999999984 68899999999999864 4679999999999888776665 764322110
Q ss_pred --ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 214 --QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 --~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.....|++++|++||+++.+|+ +++++.+++++|+++.+ .++|+|||+.+.+
T Consensus 503 ~~~~~~~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~~-~~~p~lIev~v~~ 556 (565)
T PRK06154 503 RATDISGDYAAIARALGGYGERVE--DPEMLVPALLRALRKVK-EGTPALLEVITSE 556 (565)
T ss_pred cccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcc-CCCeEEEEEEeCh
Confidence 1113589999999999999999 99999999999986432 3689999999844
|
|
| >PRK08266 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.4e-15 Score=152.81 Aligned_cols=118 Identities=27% Similarity=0.345 Sum_probs=96.1
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc--------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~-------- 212 (380)
.|+||+++|.|+|++++ .+++.|||++|||+|+++ .++|.+|.+++||+++||.|| +|++.....
T Consensus 401 ~GsmG~~lp~aiGa~la----~p~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~~ 474 (542)
T PRK08266 401 QGTLGYGFPTALGAKVA----NPDRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGRV 474 (542)
T ss_pred CcccccHHHHHHHHHHh----CCCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCc
Confidence 58999999999999887 468899999999999976 477999999999988877766 587532111
Q ss_pred --cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCC
Q 016909 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 271 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~g 271 (380)
......|+.++|++||+++.+|+ +++++.++++++++ .++|+|||+.|+|...
T Consensus 475 ~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i~~~~~ 529 (542)
T PRK08266 475 VASDLVNPDFVKLAESFGVAAFRVD--SPEELRAALEAALA----HGGPVLIEVPVPRGSE 529 (542)
T ss_pred ccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEecCCCC
Confidence 01124689999999999999998 78899888888875 5789999999987654
|
|
| >PRK12474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.2e-15 Score=154.01 Aligned_cols=113 Identities=28% Similarity=0.232 Sum_probs=91.7
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec---------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ |++....
T Consensus 388 ~gsmG~glpaAiGa~lA~----p~r~vv~i~GDG~f~m~--~qEL~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~~~ 461 (518)
T PRK12474 388 GGSIGQGLPLAAGAAVAA----PDRKVVCPQGDGGAAYT--MQALWTMARENLDVTVVIFANRSYAILNGELQRVGAQGA 461 (518)
T ss_pred CCccCccHHHHHHHHHHC----CCCcEEEEEcCchhcch--HHHHHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCCCC
Confidence 599999999999999984 68899999999999864 4679999999998777776665 7653210
Q ss_pred c------c--ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 212 S------D--QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 212 ~------~--~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
. . ..+..|++++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+
T Consensus 462 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~--~~~eL~~al~~a~~----~~~p~liev~~ 518 (518)
T PRK12474 462 GRNALSMLDLHNPELNWMKIAEGLGVEASRAT--TAEEFSAQYAAAMA----QRGPRLIEAMI 518 (518)
T ss_pred CccccccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 0 0 0112589999999999999999 89999999999875 47999999964
|
|
| >COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.6e-15 Score=153.64 Aligned_cols=118 Identities=27% Similarity=0.365 Sum_probs=96.8
Q ss_pred cccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecccccC--
Q 016909 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQFR-- 216 (380)
Q Consensus 140 ~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~~~~-- 216 (380)
+..|+||.++|.|+|+++|. +++.|||++|||+|++. .++|.+|.+|++|+++||.||+ |++.........
T Consensus 405 ~~~GtMG~glPaAIGAkla~----P~r~Vv~i~GDG~F~m~--~qEL~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~ 478 (550)
T COG0028 405 GGLGTMGFGLPAAIGAKLAA----PDRKVVAIAGDGGFMMN--GQELETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGG 478 (550)
T ss_pred CCCccccchHHHHHHHHhhC----CCCcEEEEEcccHHhcc--HHHHHHHHHhCCCEEEEEEECCccccchHHHHHhcCC
Confidence 45689999999999998884 68999999999999854 5779999999999999888887 555432221111
Q ss_pred -------CcC-HHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016909 217 -------SDG-AVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 217 -------~~~-~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 269 (380)
... +.+.|++||+++++|+ +++++.+++++|++ .++|+||++.+.+-
T Consensus 479 ~~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~al~~al~----~~~p~lidv~id~~ 533 (550)
T COG0028 479 RYSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEALA----SDGPVLIDVVVDPE 533 (550)
T ss_pred CcceeecCCccHHHHHHHcCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCc
Confidence 122 9999999999999999 99999999999987 58999999999765
|
|
| >cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=132.83 Aligned_cols=116 Identities=17% Similarity=0.164 Sum_probs=89.2
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCcccc-CcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc-c----
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD-Q---- 214 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~-~---- 214 (380)
.++||.++|.|+|+++|. ++++||++.|||++ +.+ ..+|.+|.++++|+++||.||+ |++...... .
T Consensus 50 ~g~mG~glpaAiGa~la~----p~r~Vv~i~GDGs~f~m~--~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~ 123 (193)
T cd03375 50 HTLHGRALAVATGVKLAN----PDLTVIVVSGDGDLAAIG--GNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEG 123 (193)
T ss_pred hhhhccHHHHHHHHHHhC----CCCeEEEEeccchHhhcc--HHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCC
Confidence 378999999999999884 78999999999994 543 4669999999999887776665 665432110 0
Q ss_pred -----------cCCcCHHHHHhhcCeeEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 215 -----------FRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 215 -----------~~~~~~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
....|+.+.+++||++++ ++.-.++.++.+++++|++ .++|++||+.+.
T Consensus 124 ~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~----~~gp~vIev~~~ 184 (193)
T cd03375 124 FKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ----HKGFSFVEVLSP 184 (193)
T ss_pred CcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh----cCCCEEEEEECC
Confidence 113589999999999985 2233489999999999986 489999999864
|
In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity. |
| >PRK06725 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.8e-15 Score=154.35 Aligned_cols=115 Identities=20% Similarity=0.258 Sum_probs=93.4
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecc--------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~-------- 212 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|+.. ..+|.+|.+++||+++||.||+ |++.....
T Consensus 421 ~gsmG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~--~~el~Ta~~~~lpi~~vV~NN~~~~~~~~~q~~~~~~~~ 494 (570)
T PRK06725 421 LGTMGFGFPAAIGAQLAK----EEELVICIAGDASFQMN--IQELQTIAENNIPVKVFIINNKFLGMVRQWQEMFYENRL 494 (570)
T ss_pred cccccchhhHHHhhHhhc----CCCeEEEEEecchhhcc--HHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHhcCCcc
Confidence 489999999999999884 67899999999999754 3559999999999888888776 55432110
Q ss_pred --cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
......|+++++++||+++.+|+ +++++.++++.+++ .++|+|||+.+.+
T Consensus 495 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~id~ 546 (570)
T PRK06725 495 SESKIGSPDFVKVAEAYGVKGLRAT--NSTEAKQVMLEAFA----HEGPVVVDFCVEE 546 (570)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 11234689999999999999997 99999888888875 5899999999854
|
|
| >PRK06546 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-14 Score=152.36 Aligned_cols=116 Identities=25% Similarity=0.328 Sum_probs=94.6
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceee--------ec
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST--------PI 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~--------~~ 211 (380)
..|+||+++|.|+|+++|. +++.|||++|||+|+.+ ..+|.+|++++||+++||.||+ |++.. +.
T Consensus 406 ~~gsmG~~~paAiGa~la~----p~~~vv~i~GDGsf~~~--~~el~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~~~ 479 (578)
T PRK06546 406 RHGSMANALPHAIGAQLAD----PGRQVISMSGDGGLSML--LGELLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGLPD 479 (578)
T ss_pred CcccccchhHHHHHHHHhC----CCCcEEEEEcCchHhhh--HHHHHHHHHhCCCeEEEEEECCccccHHHHHHhcCCCc
Confidence 3589999999999999984 67899999999999864 3569999999999888777776 55431 10
Q ss_pred c-cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 S-DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~-~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
. ......|++++|++||+++.+|+ +++++.++++++++ .++|+|||+.+-+
T Consensus 480 ~~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~ 531 (578)
T PRK06546 480 FGTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREAFA----HPGPALVDVVTDP 531 (578)
T ss_pred ccccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 0 11235689999999999999998 99999999998876 5899999999854
|
|
| >PRK09107 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-14 Score=154.12 Aligned_cols=115 Identities=20% Similarity=0.243 Sum_probs=93.9
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec---------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.||+++|||+|+.. ..+|.+|++|+||+++||.||+ |++....
T Consensus 429 ~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~~~~~~~ 502 (595)
T PRK09107 429 LGTMGYGLPAALGVQIAH----PDALVIDIAGDASIQMC--IQEMSTAVQYNLPVKIFILNNQYMGMVRQWQQLLHGNRL 502 (595)
T ss_pred chhhhhhHHHHHHHHHhC----CCCeEEEEEcCchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 489999999999999984 78899999999999864 3669999999999888777776 6543210
Q ss_pred ccc--cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~--~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
... ....|+++.|++||+++.+|+ +++++.+++++|.+ .++|+|||+.+.+
T Consensus 503 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 555 (595)
T PRK09107 503 SHSYTEAMPDFVKLAEAYGAVGIRCE--KPGDLDDAIQEMID----VDKPVIFDCRVAN 555 (595)
T ss_pred ccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 111 123689999999999999998 99999999999886 4799999999965
|
|
| >cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=136.04 Aligned_cols=122 Identities=21% Similarity=0.247 Sum_probs=93.4
Q ss_pred ccccccccCccHHHHHHHHHhhhcCCCceeEEEeCcccc-CcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc---
Q 016909 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD--- 213 (380)
Q Consensus 139 ~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~--- 213 (380)
+...++||.++|.|+|++++ .++++|||+.|||++ +.| .++|.+|+++++|+++||.||+ |++......
T Consensus 58 ~~~~gsmG~GlpaAiGa~~a----~p~r~VV~i~GDG~~~~m~--~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~ 131 (235)
T cd03376 58 FENAAAVASGIEAALKALGR----GKDITVVAFAGDGGTADIG--FQALSGAAERGHDILYICYDNEAYMNTGIQRSGST 131 (235)
T ss_pred hcCHHHHHHHHHHHHHHhcc----CCCCeEEEEEcCchHHhhH--HHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCC
Confidence 33457999999999998655 478899999999995 554 4669999999999998888886 553111000
Q ss_pred ------------------ccCCcCHHHHHhhcCeeEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016909 214 ------------------QFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 214 ------------------~~~~~~~~~~a~a~G~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 270 (380)
.....|+.++|+++|++++. +...+++++.+++++|++ .++|+|||+.+--.-
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~----~~gP~lIev~~~C~~ 203 (235)
T cd03376 132 PYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALS----IEGPAYIHILSPCPT 203 (235)
T ss_pred CCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEECCCCC
Confidence 11336899999999999874 555699999999999886 479999999874433
|
PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity. |
| >PRK11269 glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7e-15 Score=155.34 Aligned_cols=120 Identities=23% Similarity=0.215 Sum_probs=96.4
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecc-----c-
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-----D- 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~-----~- 213 (380)
..|+||+++|.|+|+++|. +++.|||++|||+|+.. ..+|.+|.+++||+++||.||+ |++..... .
T Consensus 417 ~~G~mG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~~~ 490 (591)
T PRK11269 417 QAGPLGWTIPAALGVRAAD----PDRNVVALSGDYDFQFL--IEELAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMDY 490 (591)
T ss_pred ccccccchhhhHHhhhhhC----CCCcEEEEEccchhhcC--HHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHhccCc
Confidence 3589999999999999884 67899999999999864 3569999999999888887776 65432110 0
Q ss_pred --c------------cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 214 --Q------------FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 --~------------~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
. ....|+++.|++||+++.+|. +++++..++++|++.+.+.++|+|||+.+.+
T Consensus 491 ~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~~~gp~lieV~v~~ 557 (591)
T PRK11269 491 CVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPALEQAKALMAEFRVPVVVEVILER 557 (591)
T ss_pred cceeeccccccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 0 023689999999999999998 9999999999998644446899999999854
|
|
| >PRK07586 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=150.69 Aligned_cols=113 Identities=31% Similarity=0.257 Sum_probs=90.5
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec---------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.|| +|++....
T Consensus 384 ~g~mG~~lpaaiGa~lA~----p~r~Vv~i~GDGsf~m~--~~EL~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~ 457 (514)
T PRK07586 384 GGAIGQGLPLATGAAVAC----PDRKVLALQGDGSAMYT--IQALWTQARENLDVTTVIFANRAYAILRGELARVGAGNP 457 (514)
T ss_pred CcccccHHHHHHHHHHhC----CCCeEEEEEechHHHhH--HHHHHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcCCCC
Confidence 489999999999999984 68899999999999854 577999999999976666555 57753210
Q ss_pred -c------c-ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 212 -S------D-QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 212 -~------~-~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
. . ..+..|+.+.|++||+++.+|+ ++.++.+++++|++ .++|+|||+.+
T Consensus 458 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~el~~al~~a~~----~~~p~liev~~ 514 (514)
T PRK07586 458 GPRALDMLDLDDPDLDWVALAEGMGVPARRVT--TAEEFADALAAALA----EPGPHLIEAVV 514 (514)
T ss_pred CccccccccCCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 0 0 1123689999999999999998 89999999988875 47999999964
|
|
| >PRK05858 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-14 Score=151.55 Aligned_cols=115 Identities=22% Similarity=0.153 Sum_probs=93.7
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc--------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~-------- 212 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.|| .|++.....
T Consensus 406 ~gsmG~~lp~aiGa~la~----p~r~vv~i~GDG~f~~~--~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~ 479 (542)
T PRK05858 406 FGCLGTGPGYALAARLAR----PSRQVVLLQGDGAFGFS--LMDVDTLVRHNLPVVSVIGNNGIWGLEKHPMEALYGYDV 479 (542)
T ss_pred ccccccchhHHHHHHHhC----CCCcEEEEEcCchhcCc--HHHHHHHHHcCCCEEEEEEeCCchhhHHHHHHHhcCCcc
Confidence 589999999999999884 68899999999999864 356999999999977777666 465432110
Q ss_pred --cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
......|+.+.|++||+++.+|+ +++++.+++++|++ .++|+|||+.|.+
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~~~~ 531 (542)
T PRK05858 480 AADLRPGTRYDEVVRALGGHGELVT--VPAELGPALERAFA----SGVPYLVNVLTDP 531 (542)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEECC
Confidence 11135789999999999999999 99999999999886 5799999999944
|
|
| >PRK06882 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-14 Score=150.69 Aligned_cols=117 Identities=20% Similarity=0.266 Sum_probs=94.5
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceee---------e
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST---------P 210 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~---------~ 210 (380)
..|++|+++|.|+|+++|. ++++|||++|||+|++. .++|.+|.+++||+++||.||+ |++.. .
T Consensus 419 ~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~~~ 492 (574)
T PRK06882 419 GAGTMGFGLPAAIGVKFAH----PEATVVCVTGDGSIQMN--IQELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSGR 492 (574)
T ss_pred CcccccchhHHHHHHHhhc----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHhcCCc
Confidence 3588999999999999984 57899999999999865 4779999999999888887776 44321 0
Q ss_pred cccc--cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 211 ISDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 211 ~~~~--~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.... ....++.++|++||+++++|+ +.+++..+++++++. .++|+|||+.+.+
T Consensus 493 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~liev~i~~ 547 (574)
T PRK06882 493 HSQVYMNSLPDFAKLAEAYGHVGIQID--TPDELEEKLTQAFSI---KDKLVFVDVNVDE 547 (574)
T ss_pred ccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEecC
Confidence 0111 124689999999999999998 899999999988863 3789999999965
|
|
| >PRK07064 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-14 Score=150.52 Aligned_cols=114 Identities=22% Similarity=0.289 Sum_probs=92.5
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec---------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.||+++|||+|+.. ..+|.+|.+++||+++||.|| +|++....
T Consensus 404 ~g~mG~~lpaAiGa~lA~----p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~~~~~~ 477 (544)
T PRK07064 404 GGGIGQGLAMAIGAALAG----PGRKTVGLVGDGGLMLN--LGELATAVQENANMVIVLMNDGGYGVIRNIQDAQYGGRR 477 (544)
T ss_pred CCccccccchhhhhhhhC----cCCcEEEEEcchHhhhh--HHHHHHHHHhCCCeEEEEEeCChhHHHHHHHHHhcCCcc
Confidence 478999999999999984 67899999999999864 367999999999977766555 47653211
Q ss_pred -ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 212 -SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 212 -~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
.......|+.+.|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.
T Consensus 478 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~ 528 (544)
T PRK07064 478 YYVELHTPDFALLAASLGLPHWRVT--SADDFEAVLREALA----KEGPVLVEVDML 528 (544)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEcc
Confidence 111234689999999999999998 89999999998875 479999999985
|
|
| >PRK07979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-14 Score=150.55 Aligned_cols=119 Identities=23% Similarity=0.250 Sum_probs=95.4
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec--------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~-------- 211 (380)
..|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ |++....
T Consensus 419 ~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~--~~eL~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~~~~ 492 (574)
T PRK07979 419 GLGTMGFGLPAALGVKMAL----PEETVVCVTGDGSIQMN--IQELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGR 492 (574)
T ss_pred CccchhhHHHHHHHHHHhC----CCCeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCchhhHHHHHHHHhcCCc
Confidence 3489999999999999984 67899999999999854 4679999999999888777665 5542210
Q ss_pred -ccc--cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 -SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 -~~~--~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
... ....|+.+.|++||+++.+|+ +++++.+++++|++.++ .++|+|||+.+.+
T Consensus 493 ~~~~~~~~~~d~~~iA~a~G~~g~~v~--~~~eL~~al~~a~~~~~-~~~p~lIeV~i~~ 549 (574)
T PRK07979 493 HSQSYMQSLPDFVRLAEAYGHVGIQIS--HPDELESKLSEALEQVR-NNRLVFVDVTVDG 549 (574)
T ss_pred cccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhccC-CCCcEEEEEEECC
Confidence 111 124689999999999999998 99999999999987543 3789999999954
|
|
| >TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.2e-14 Score=139.20 Aligned_cols=118 Identities=20% Similarity=0.148 Sum_probs=93.2
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCC-cceeeecccccCCc
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNG-WAISTPISDQFRSD 218 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~-~~i~~~~~~~~~~~ 218 (380)
+.|+||+++|+|+|+|+|. +++.|||+.|||++.+. ..+|.+++++++ |+++||.||+ |+............
T Consensus 219 ~~GsMG~a~p~AlG~ala~----p~r~Vv~i~GDGsflm~--~~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~~ 292 (361)
T TIGR03297 219 TVGSMGHASQIALGLALAR----PDQRVVCLDGDGAALMH--MGGLATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQHL 292 (361)
T ss_pred eechhhhHHHHHHHHHHHC----CCCCEEEEEChHHHHHH--HHHHHHHHHhCCCCeEEEEEcCccccccCCcCCCCCCC
Confidence 3599999999999999984 57899999999999643 457899999997 8888777776 55433222222357
Q ss_pred CHHHHHhhcCe-eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016909 219 GAVVKGRAYGV-RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 219 ~~~~~a~a~G~-~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 270 (380)
|+.+.|++||+ .+++|+ +.+++.++++++.+ .++|+|||+++-...
T Consensus 293 d~~~iA~a~G~~~~~~v~--~~~eL~~al~~a~~----~~gp~lIeV~v~~g~ 339 (361)
T TIGR03297 293 DFAQIAKACGYAKVYEVS--TLEELETALTAASS----ANGPRLIEVKVRPGS 339 (361)
T ss_pred CHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEecCCC
Confidence 89999999997 567775 99999999998864 479999999985543
|
This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A |
| >TIGR02418 acolac_catab acetolactate synthase, catabolic | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-14 Score=150.09 Aligned_cols=117 Identities=21% Similarity=0.289 Sum_probs=94.0
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec-----c--
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI-----S-- 212 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~-----~-- 212 (380)
..|+||+++|.|+|+++|. +++.||+++|||+|++. ..+|.+|.+++||+++||.|| +|++.... .
T Consensus 406 ~~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~ 479 (539)
T TIGR02418 406 GMQTLGVALPWAIGAALVR----PNTKVVSVSGDGGFLFS--SMELETAVRLKLNIVHIIWNDNGYNMVEFQEEMKYQRS 479 (539)
T ss_pred CccccccHHHHHHHHHHhC----CCCcEEEEEcchhhhch--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCc
Confidence 3579999999999999984 67899999999999864 466999999999977766655 46653211 0
Q ss_pred --cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016909 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 269 (380)
......|+.+.|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+.
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~----~~~p~lIev~v~~~ 532 (539)
T TIGR02418 480 SGVDFGPIDFVKYAESFGAKGLRVE--SPDQLEPTLRQAME----VEGPVVVDIPVDYS 532 (539)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecCc
Confidence 01234689999999999999999 99999999999875 47999999999553
|
Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family. |
| >PRK08199 thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-14 Score=149.47 Aligned_cols=116 Identities=24% Similarity=0.295 Sum_probs=93.8
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec-c------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-S------ 212 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~-~------ 212 (380)
..|+||+++|.|+|++++ .++++|||++|||+|+.. .++|.+|++++||+++||.||+ |++.... .
T Consensus 413 ~~g~mG~glpaaiGa~la----~p~~~vv~i~GDGsf~~~--~~el~ta~~~~l~i~~vv~nN~~~~~~~~~~~~~~~~~ 486 (557)
T PRK08199 413 TSGSMGYGLPAAIAAKLL----FPERTVVAFAGDGCFLMN--GQELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPGR 486 (557)
T ss_pred CCccccchHHHHHHHHHh----CCCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCc
Confidence 358999999999998887 468899999999999853 4779999999999999888887 6643211 0
Q ss_pred ---cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 213 ---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 ---~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
......|+++.+++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 487 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~li~v~~~~ 539 (557)
T PRK08199 487 VSGTDLTNPDFAALARAYGGHGETVE--RTEDFAPAFERALA----SGKPALIEIRIDP 539 (557)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCH
Confidence 11123689999999999999999 88898888888765 5899999999854
|
|
| >PRK09124 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.4e-14 Score=149.64 Aligned_cols=116 Identities=23% Similarity=0.287 Sum_probs=93.3
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeee---------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP--------- 210 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~--------- 210 (380)
..|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ |++...
T Consensus 406 ~~G~mG~~lpaAiGa~la~----p~r~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~~ 479 (574)
T PRK09124 406 NHGSMANAMPQALGAQAAH----PGRQVVALSGDGGFSML--MGDFLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYLT 479 (574)
T ss_pred CcccccchHHHHHHHHHhC----CCCeEEEEecCcHHhcc--HHHHHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCcc
Confidence 4589999999999999884 67899999999999864 3569999999999777666554 765311
Q ss_pred cccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 211 ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 211 ~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
........|+++.|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~i~~ 531 (574)
T PRK09124 480 DGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAFA----HDGPALVDVVTAK 531 (574)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 0011234689999999999999998 99999999998875 4799999999854
|
|
| >PRK06112 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-14 Score=149.91 Aligned_cols=115 Identities=29% Similarity=0.400 Sum_probs=92.9
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc-------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------- 213 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~------- 213 (380)
.|+||+++|.|+|+++| .++++|||++|||+|+ +..++|++|+++++|+++||.||+ |++......
T Consensus 436 ~gsmG~~l~~aiGa~la----~~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~~~~ 509 (578)
T PRK06112 436 LAGLGWGVPMAIGAKVA----RPGAPVICLVGDGGFA--HVWAELETARRMGVPVTIVVLNNGILGFQKHAETVKFGTHT 509 (578)
T ss_pred ccccccHHHHHHHHHhh----CCCCcEEEEEcchHHH--hHHHHHHHHHHhCCCeEEEEEeCCccCCEEeccccccCCcc
Confidence 47899999999999887 4678999999999997 456889999999999888888886 343221110
Q ss_pred ---ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 214 ---QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ---~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.....++.++|++||+++++|+ +++++.++++++++ .++|+|||+++.+
T Consensus 510 ~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~ 561 (578)
T PRK06112 510 DACHFAAVDHAAIARACGCDGVRVE--DPAELAQALAAAMA----APGPTLIEVITDP 561 (578)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEcCc
Confidence 1124689999999999999998 89999888888875 5799999999854
|
|
| >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-14 Score=152.40 Aligned_cols=116 Identities=22% Similarity=0.239 Sum_probs=93.8
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecc-------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~------- 212 (380)
..|+||.++|.|+|+++|. +++.||+++|||+|++. ..+|.+|++|+||+++||.||+ |++.....
T Consensus 432 ~~g~mG~glpaAiGA~lA~----p~r~Vv~i~GDG~f~m~--~~eL~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~~~ 505 (616)
T PRK07418 432 GLGTMGFGMPAAMGVKVAL----PDEEVICIAGDASFLMN--IQELGTLAQYGINVKTVIINNGWQGMVRQWQESFYGER 505 (616)
T ss_pred CccccccHHHHHHHHHHhC----CCCcEEEEEcchHhhhh--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCC
Confidence 3589999999999999884 68899999999999854 4569999999999888887776 55422100
Q ss_pred ---ccc--CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 213 ---DQF--RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 ---~~~--~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
... ...|+++.|++||+++++|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 506 ~~~~~~~~~~~d~~~~A~a~G~~g~~V~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 560 (616)
T PRK07418 506 YSASNMEPGMPDFVKLAEAFGVKGMVIS--ERDQLKDAIAEALA----HDGPVLIDVHVRR 560 (616)
T ss_pred ceeecCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 001 24689999999999999998 99999999988875 4789999999854
|
|
| >PLN02573 pyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.2e-14 Score=149.96 Aligned_cols=116 Identities=17% Similarity=0.152 Sum_probs=93.1
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc----ccc
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS----DQF 215 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~----~~~ 215 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|++ ...+|.+|++++||+++||.|| +|++..... ...
T Consensus 426 ~~gsmG~glpaaiGa~lA~----p~r~vv~i~GDG~f~m--~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~~~~~ 499 (578)
T PLN02573 426 QYGSIGWSVGATLGYAQAA----PDKRVIACIGDGSFQV--TAQDVSTMIRCGQKSIIFLINNGGYTIEVEIHDGPYNVI 499 (578)
T ss_pred chhhhhhhhhHHHHHHHhC----CCCceEEEEeccHHHh--HHHHHHHHHHcCCCCEEEEEeCCceeEEEeecccCcccc
Confidence 3689999999999999985 6789999999999985 4467999999999977766555 577643221 112
Q ss_pred CCcCHHHHHhhcC-----eeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 216 RSDGAVVKGRAYG-----VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 216 ~~~~~~~~a~a~G-----~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
...++.+.|++|| +++.+|+ +++++.+++++|++. +.++|+|||+.+
T Consensus 500 ~~~d~~~lA~a~G~~~g~~~~~~V~--~~~eL~~al~~a~~~--~~~~p~lieV~v 551 (578)
T PLN02573 500 KNWNYTGLVDAIHNGEGKCWTAKVR--TEEELIEAIATATGE--KKDCLCFIEVIV 551 (578)
T ss_pred CCCCHHHHHHHhcCcCCceeEEEec--CHHHHHHHHHHHHhh--CCCCcEEEEEEc
Confidence 3468999999995 8999999 899999999998742 247899999988
|
|
| >PRK07710 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.4e-14 Score=148.03 Aligned_cols=115 Identities=27% Similarity=0.357 Sum_probs=92.1
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec---------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.||+++|||+|+.. + .+|++|.++++|+++||.||+ |++....
T Consensus 423 ~g~mG~glpaAiGaala~----p~~~vv~i~GDGsf~m~-~-~eL~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~~~ 496 (571)
T PRK07710 423 LGTMGFGLPAAIGAQLAK----PDETVVAIVGDGGFQMT-L-QELSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQRY 496 (571)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-H-HHHHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCCcc
Confidence 489999999999999984 67899999999999864 3 459999999999777666665 6653210
Q ss_pred --ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 --SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 --~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.......++++.|++||+++.+|+ +.+++..++++|++ .++|+|||+.+.+
T Consensus 497 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~vd~ 549 (571)
T PRK07710 497 SHSLLSCQPDFVKLAEAYGIKGVRID--DELEAKEQLQHAIE----LQEPVVIDCRVLQ 549 (571)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 011134689999999999999998 88888888888775 5799999999965
|
|
| >PRK06965 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.2e-14 Score=149.35 Aligned_cols=117 Identities=22% Similarity=0.269 Sum_probs=94.1
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeee---------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP--------- 210 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~--------- 210 (380)
..|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ |++...
T Consensus 435 ~~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDGsf~m~--~~eL~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~~ 508 (587)
T PRK06965 435 GLGTMGVGLPYAMGIKMAH----PDDDVVCITGEGSIQMC--IQELSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSKR 508 (587)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchhhhcC--HHHHHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCCC
Confidence 3589999999999999984 67899999999999864 4679999999999888777776 543211
Q ss_pred cccc-c-CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 211 ISDQ-F-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 211 ~~~~-~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.... . ...|+++.|++||+++.+|+ +..++.+++++|+++ .++|+|||+.+.+
T Consensus 509 ~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lieV~i~~ 563 (587)
T PRK06965 509 YSHSYMDALPDFVKLAEAYGHVGMRIE--KTSDVEPALREALRL---KDRTVFLDFQTDP 563 (587)
T ss_pred ccccCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEecc
Confidence 1111 1 24689999999999999998 999999999998863 3689999999854
|
|
| >PRK08979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.7e-14 Score=148.51 Aligned_cols=116 Identities=24% Similarity=0.311 Sum_probs=93.2
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec---------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ |++....
T Consensus 420 ~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~--~~EL~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~~~~ 493 (572)
T PRK08979 420 LGTMGFGLPAAMGVKFAM----PDETVVCVTGDGSIQMN--IQELSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQGRH 493 (572)
T ss_pred cccccchhhHHHhhhhhC----CCCeEEEEEcchHhhcc--HHHHHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 579999999999999984 67899999999999864 4669999999999777776665 5543210
Q ss_pred ccc-c-CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 SDQ-F-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~-~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
... . ...|+++.|++||+++.+|+ ++.++..++++|++. .++|+|||+.+.+
T Consensus 494 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lIev~i~~ 547 (572)
T PRK08979 494 SHSYMDSVPDFAKIAEAYGHVGIRIS--DPDELESGLEKALAM---KDRLVFVDINVDE 547 (572)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 011 1 24689999999999999999 999999999988752 3789999999854
|
|
| >TIGR02720 pyruv_oxi_spxB pyruvate oxidase | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.9e-14 Score=147.88 Aligned_cols=117 Identities=21% Similarity=0.261 Sum_probs=93.3
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeec----c----
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPI----S---- 212 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~----~---- 212 (380)
.|+||+++|.|+|+++|. ++++||+++|||+|++. ..+|.+|++++||+++|| +||+|++.... .
T Consensus 407 ~gsmG~glpaAiGa~la~----p~r~Vv~i~GDGsf~m~--~~eL~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~~ 480 (575)
T TIGR02720 407 FATMGVGVPGAIAAKLNY----PDRQVFNLAGDGAFSMT--MQDLLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPLI 480 (575)
T ss_pred cchhhchHHHHHHHHHhC----CCCcEEEEEcccHHHhh--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCcc
Confidence 589999999999998874 68899999999999864 466999999999977765 55558753210 0
Q ss_pred -cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 213 -DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 -~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
......|++++|++||+++.+|+ +.+++.++++++++ + +.++|+|||+++..
T Consensus 481 ~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~-~-~~~~p~liev~i~~ 533 (575)
T TIGR02720 481 GVDFNDADFAKIAEGVGAVGFRVN--KIEQLPAVFEQAKA-I-KQGKPVLIDAKITG 533 (575)
T ss_pred cccCCCCCHHHHHHHCCCEEEEeC--CHHHHHHHHHHHHh-h-CCCCcEEEEEEeCC
Confidence 11234689999999999999998 89999999999885 2 35799999999854
|
Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name. |
| >PRK06457 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.7e-14 Score=146.71 Aligned_cols=116 Identities=16% Similarity=0.264 Sum_probs=93.1
Q ss_pred ccccccCccHHHHHHHHHhhhcCC-CceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec-------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRK-DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI------- 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~-~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~------- 211 (380)
..|+||+++|.|+|+++|. + +++|||++|||+|+.. ..+|.+|.+++||+++||.|| +|++....
T Consensus 394 ~~g~mG~glpaaiGa~la~----p~~~~Vv~i~GDGsf~~~--~~eL~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~ 467 (549)
T PRK06457 394 WLGSMGIGVPGSVGASFAV----ENKRQVISFVGDGGFTMT--MMELITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGYP 467 (549)
T ss_pred CcchhhhhHHHHHHHHhcC----CCCCeEEEEEcccHHhhh--HHHHHHHHHHCCCeEEEEEECCccchHHHHHHHhcCC
Confidence 3699999999999999884 4 7899999999999854 467999999999977766555 56643210
Q ss_pred --ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 --SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 --~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.......|+.+.|++||+++.+|+ +++++..+++++++ .++|+|||+++.+
T Consensus 468 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 520 (549)
T PRK06457 468 EWGVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEFLN----TKGPAVLDAIVDP 520 (549)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCc
Confidence 011224689999999999999998 99999999999875 4799999999954
|
|
| >TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.2e-14 Score=147.90 Aligned_cols=114 Identities=20% Similarity=0.231 Sum_probs=91.6
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEc-CCcceeeecc------c
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN-NGWAISTPIS------D 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~N-N~~~i~~~~~------~ 213 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|++ ...+|.+|++++||+++||.| ++|++..... .
T Consensus 402 ~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m--~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~ 475 (539)
T TIGR03393 402 LWGSIGYTLPAAFGAQTAC----PNRRVILLIGDGSAQL--TIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYN 475 (539)
T ss_pred hhhhhhhHHHHHHHHHhcC----CCCCeEEEEcCcHHHh--HHHHHHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcC
Confidence 3589999999999999884 7889999999999985 457799999999996665555 5577543211 1
Q ss_pred ccCCcCHHHHHhhcCee----EEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 214 QFRSDGAVVKGRAYGVR----SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 ~~~~~~~~~~a~a~G~~----~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
.....++.+.+++||++ +.+|+ +..++.++++++++ .++|+|||+.+
T Consensus 476 ~~~~~df~~la~a~G~~~~~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i 526 (539)
T TIGR03393 476 DIALWNWTHLPQALSLDPQSECWRVS--EAEQLADVLEKVAA----HERLSLIEVVL 526 (539)
T ss_pred cCCCCCHHHHHHHcCCCCccceEEec--cHHHHHHHHHHHhc----cCCeEEEEEEc
Confidence 22346899999999985 88998 89999999988875 48999999987
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria. |
| >PRK06466 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.8e-14 Score=146.94 Aligned_cols=117 Identities=25% Similarity=0.271 Sum_probs=93.9
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec--------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~-------- 211 (380)
..|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ |++....
T Consensus 421 ~~gsmG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~--~~eL~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~~ 494 (574)
T PRK06466 421 GLGTMGFGLPAAMGVKLAF----PDQDVACVTGEGSIQMN--IQELSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEGR 494 (574)
T ss_pred CcchhhchHHHHHHHHHhC----CCCeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCCc
Confidence 3589999999999999984 67899999999999864 4679999999999777776664 6643210
Q ss_pred -ccc--cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 -SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 -~~~--~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
... ....|+.+.|++||+++.+|+ ++.++.+++++|++. .++|+|||+.+.+
T Consensus 495 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~~~p~lIev~i~~ 549 (574)
T PRK06466 495 HSHSYMESLPDFVKLAEAYGHVGIRIT--DLKDLKPKLEEAFAM---KDRLVFIDIYVDR 549 (574)
T ss_pred eeecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 111 123689999999999999998 999999999988752 3799999999954
|
|
| >PRK08617 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.3e-14 Score=148.23 Aligned_cols=116 Identities=19% Similarity=0.253 Sum_probs=92.9
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeeccc------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.|| .|++......
T Consensus 412 ~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~~~~~~~~~~~~~~~~~ 485 (552)
T PRK08617 412 GMQTLGVALPWAIAAALVR----PGKKVVSVSGDGGFLFS--AMELETAVRLKLNIVHIIWNDGHYNMVEFQEEMKYGRS 485 (552)
T ss_pred ccccccccccHHHhhHhhc----CCCcEEEEEechHHhhh--HHHHHHHHHhCCCeEEEEEECCccchHHHHHHhhcCCc
Confidence 3579999999999999884 67899999999999854 466999999999987766555 4654321100
Q ss_pred ---ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 214 ---QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ---~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.....|+.+.|++||+++.+|. +++++.+++++|++ .++|+|||+.+.+
T Consensus 486 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~liev~~~~ 537 (552)
T PRK08617 486 SGVDFGPVDFVKYAESFGAKGLRVT--SPDELEPVLREALA----TDGPVVIDIPVDY 537 (552)
T ss_pred ccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCcEEEEEEecc
Confidence 1124689999999999999998 99999999998875 4789999999865
|
|
| >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.6e-14 Score=146.41 Aligned_cols=114 Identities=19% Similarity=0.170 Sum_probs=92.1
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccee------e--ecc
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIS------T--PIS 212 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~------~--~~~ 212 (380)
.|+||+++|.|+|+++| +++.||+++|||+|++. ..+|.+|++++||+++||.||+ |... . +..
T Consensus 416 ~gsmG~~lpaaiGaala-----~~~~vv~i~GDGsf~m~--~~EL~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~ 488 (554)
T TIGR03254 416 WGVMGIGMGYAIAAAVE-----TGKPVVALEGDSAFGFS--GMEVETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPAP 488 (554)
T ss_pred CCcCCchHHHHHHHHhc-----CCCcEEEEEcCchhccc--HHHHHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCCCc
Confidence 58999999999999997 26889999999999865 3569999999999888888886 4111 0 000
Q ss_pred cc-cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 213 DQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 ~~-~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.. ....++++.+++||+++++|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 489 ~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~id~ 539 (554)
T TIGR03254 489 TVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEALA----SGKPTLINAVIDP 539 (554)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 11 135689999999999999998 99999999998875 4799999999854
|
In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase. |
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.5e-14 Score=147.96 Aligned_cols=121 Identities=19% Similarity=0.226 Sum_probs=95.6
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc-------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~------- 212 (380)
..|+||+++|.|+|+++|. ++++||+++|||+|+.+ ..+|.+|.+++||+++||.|| +|++.....
T Consensus 433 ~~g~mG~glp~aiGa~la~----p~r~vv~i~GDG~f~~~--~~el~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~ 506 (588)
T PRK07525 433 SFGNCGYAFPAIIGAKIAC----PDRPVVGFAGDGAWGIS--MNEVMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNR 506 (588)
T ss_pred cccccccHHHHHHHHHHhC----CCCcEEEEEcCchHhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCC
Confidence 3589999999999999884 67899999999999876 355889999999977777555 676432100
Q ss_pred ---ccc-CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016909 213 ---DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 213 ---~~~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 270 (380)
... ...|+.++|++||+++++|+ +++++.++++++++.. +.++|+|||+.+.+-.
T Consensus 507 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~-~~~~p~lIev~~~~~~ 565 (588)
T PRK07525 507 FVGTELDNNVSYAGIAEAMGAEGVVVD--TQEELGPALKRAIDAQ-NEGKTTVIEIMCNQEL 565 (588)
T ss_pred cccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcC-CCCCcEEEEEEecccc
Confidence 011 23689999999999999998 9999999999998753 2368999999996544
|
|
| >PRK08155 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.6e-14 Score=146.32 Aligned_cols=115 Identities=19% Similarity=0.243 Sum_probs=94.1
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecc--------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~-------- 212 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..| |.+|.+++||+++||.||+ |++.....
T Consensus 418 ~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpvi~vV~NN~~~g~~~~~q~~~~~~~~ 491 (564)
T PRK08155 418 LGTMGFGLPAAIGAALAN----PERKVLCFSGDGSLMMN-IQE-MATAAENQLDVKIILMNNEALGLVHQQQSLFYGQRV 491 (564)
T ss_pred cccccchhHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCcccccHHHHHHhcCCCe
Confidence 489999999999999984 57899999999999875 444 9999999999888887776 77643211
Q ss_pred --ccc-CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 213 --DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 --~~~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
... ...|+++.|++||+++++|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 492 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~~~~ 544 (564)
T PRK08155 492 FAATYPGKINFMQIAAGFGLETCDLN--NEADPQAALQEAIN----RPGPALIHVRIDA 544 (564)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 111 24689999999999999998 89999998888875 4799999999954
|
|
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.3e-14 Score=146.86 Aligned_cols=118 Identities=22% Similarity=0.291 Sum_probs=94.1
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc--------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~-------- 212 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.|| +|++.....
T Consensus 429 ~g~mG~~lpaaiGa~la~----p~~~Vv~i~GDG~f~m~--~~eL~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~ 502 (579)
T TIGR03457 429 FGNCGYAFPTIIGAKIAA----PDRPVVAYAGDGAWGMS--MNEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRF 502 (579)
T ss_pred cccccchHHHHHhhhhhC----CCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCcc
Confidence 489999999999999984 67899999999999865 366999999999977766655 476532110
Q ss_pred --cccCC-cCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 213 --DQFRS-DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 --~~~~~-~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
..... .|+.+.|++||+++.+|+ +++++.+++++|++.. +.++|+|||+.+.+
T Consensus 503 ~~~~~~~~~d~~~lA~a~G~~g~~v~--~~~el~~al~~a~~~~-~~~~p~lieV~v~~ 558 (579)
T TIGR03457 503 VGTELESELSFAGIADAMGAKGVVVD--KPEDVGPALKKAIAAQ-AEGKTTVIEIVCTR 558 (579)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhC-CCCCcEEEEEEeCC
Confidence 01112 489999999999999998 9999999999998643 24689999999954
|
Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur. |
| >cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.6e-14 Score=132.68 Aligned_cols=119 Identities=20% Similarity=0.198 Sum_probs=89.7
Q ss_pred ccccccCccHHHHHHHHHh-hhcCCCceeEEEeCccccC-cchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc----
Q 016909 141 VSSTIATQLPHAVGAAYAL-KMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD---- 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~-k~~~~~~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~---- 213 (380)
..|+||.++|.|+|+++|. +...+++.|||+.|||++. .| +. .+.++.++++|+++||.||+ |++......
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g-~~-~l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~ 139 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG-FG-ALSHSLFRGEDITVIVLDNEVYSNTGGQRSGATP 139 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc-HH-HHHHHHHcCCCeEEEEECCccccCCCCCCCCCCc
Confidence 3489999999999998871 1113678999999999984 44 33 46677889999888887776 554321110
Q ss_pred ------------ccCCcCHHHHHhhcCeeEEE---EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 214 ------------QFRSDGAVVKGRAYGVRSIR---VDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 ------------~~~~~~~~~~a~a~G~~~~~---VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
.....|+++.|++||+++++ |+ ++.++.+++++|++ +.+||+||++.+
T Consensus 140 ~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~--~~~~l~~al~~al~---~~~GP~lI~v~i 202 (237)
T cd02018 140 LGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPA--LKKHFLKVVKEAIS---RTDGPTFIHAYT 202 (237)
T ss_pred CCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccC--CHHHHHHHHHHHHh---cCCCCEEEEEeC
Confidence 12346899999999999986 66 89999999998885 148999999986
|
Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors. |
| >PRK08527 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-13 Score=145.78 Aligned_cols=115 Identities=25% Similarity=0.291 Sum_probs=92.6
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecc--------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~-------- 212 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. . .+|.+|.+++||+|+||.||+ |++.....
T Consensus 413 ~g~mG~~l~~aiGa~la~----p~~~vv~i~GDG~f~m~-~-~eL~Ta~~~~lpvi~vV~NN~~~~~i~~~~~~~~~~~~ 486 (563)
T PRK08527 413 LGTMGYGLPAALGAKLAV----PDKVVINFTGDGSILMN-I-QELMTAVEYKIPVINIILNNNFLGMVRQWQTFFYEERY 486 (563)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEecCchhccc-H-HHHHHHHHhCCCeEEEEEECCcchhHHHHHHhhcCCce
Confidence 489999999999999984 57889999999999874 3 449999999999888776665 55422110
Q ss_pred ---cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 213 ---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 ---~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
......++.+.+++||+++++|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 487 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~v~~ 539 (563)
T PRK08527 487 SETDLSTQPDFVKLAESFGGIGFRVT--TKEEFDKALKEALE----SDKVALIDVKIDR 539 (563)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 11123689999999999999998 89999999988875 4799999999976
|
|
| >PRK08273 thiamine pyrophosphate protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.3e-14 Score=146.99 Aligned_cols=117 Identities=25% Similarity=0.279 Sum_probs=93.5
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHc-----CCCEEEEEEcCC-cceeeec---
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-----EAPVIFICRNNG-WAISTPI--- 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~-----~Lpvi~vv~NN~-~~i~~~~--- 211 (380)
..|+||+++|.|+|+++|. +++.|||++|||+|++... .+|.+|.+| +||+++||.||+ |++....
T Consensus 413 ~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~~~-~EL~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~~ 487 (597)
T PRK08273 413 TLATMGPAVPYAIAAKFAH----PDRPVIALVGDGAMQMNGM-AELITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQRV 487 (597)
T ss_pred ccccccchHHHHHHHHHhC----CCCcEEEEEcchhHhccch-HHHHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHHH
Confidence 3589999999999999984 6889999999999975422 569999999 899888877775 6542110
Q ss_pred ---------ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 ---------SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ---------~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
....+..|+++.|++||+++.+|. +++++..++++|++ .++|+|||+.+.+
T Consensus 488 ~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~~ 547 (597)
T PRK08273 488 MEGDPKFEASQDLPDVPYARFAELLGLKGIRVD--DPEQLGAAWDEALA----ADRPVVLEVKTDP 547 (597)
T ss_pred hcCCCcccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 011134679999999999999999 89999999999876 4899999999955
|
|
| >PRK08322 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.9e-14 Score=146.00 Aligned_cols=116 Identities=20% Similarity=0.264 Sum_probs=92.8
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEc-CCcceeeec--------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN-NGWAISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~N-N~~~i~~~~-------- 211 (380)
..|+||+++|.|+|+++|. +++.||+++|||+|+.. ..+|.+|.++++|+++||.| ++|++....
T Consensus 404 ~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~iiV~NN~~~g~~~~~~~~~~~~~ 477 (547)
T PRK08322 404 ALATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFMMN--SQELETAVRLGLPLVVLILNDNAYGMIRWKQENMGFED 477 (547)
T ss_pred CcccccchhHHHHHHHHhC----CCCcEEEEEcchhHhcc--HHHHHHHHHhCCCeEEEEEeCCCcchHHHHHHhhcCCc
Confidence 3589999999999999884 68899999999999854 35699999999997766655 457653210
Q ss_pred -ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 -SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 -~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.......|+++.|++||+++++|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 478 ~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~v~~ 529 (547)
T PRK08322 478 FGLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEALA----QPGVHVIDCPVDY 529 (547)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 011124689999999999999998 89999999998875 4799999999854
|
|
| >CHL00099 ilvB acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-13 Score=146.18 Aligned_cols=116 Identities=22% Similarity=0.282 Sum_probs=93.3
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeee---------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP--------- 210 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~--------- 210 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|+.. ..+|.+|.+|+||+++||.||+ |++...
T Consensus 428 ~~g~mG~glpaaiGaala~----p~~~vv~i~GDG~f~m~--~~eL~Ta~~~~l~~~~vV~NN~~y~~i~~~q~~~~~~~ 501 (585)
T CHL00099 428 GLGTMGYGLPAAIGAQIAH----PNELVICISGDASFQMN--LQELGTIAQYNLPIKIIIINNKWQGMVRQWQQAFYGER 501 (585)
T ss_pred cccchhhhHHHHHHHHHhC----CCCeEEEEEcchhhhhh--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCC
Confidence 4589999999999999984 57899999999999854 4679999999999888888777 443210
Q ss_pred ccc---ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 211 ISD---QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 211 ~~~---~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
... .....++.+++++||+++++|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 502 ~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~v~~ 556 (585)
T CHL00099 502 YSHSNMEEGAPDFVKLAEAYGIKGLRIK--SRKDLKSSLKEALD----YDGPVLIDCQVIE 556 (585)
T ss_pred cccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 000 1123689999999999999998 89999988888875 5799999999953
|
|
| >PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=133.19 Aligned_cols=136 Identities=17% Similarity=0.168 Sum_probs=98.3
Q ss_pred ccccCccHHHHHHHHHhhhcCCCceeEEEeCcccc-CcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecc--------
Q 016909 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 212 (380)
Q Consensus 143 g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~-------- 212 (380)
+++|.++|+|+|+++| .+++.||++.|||++ +.| ...|.+|+++++|+++||.||+ |++.....
T Consensus 70 g~mG~alpaAiGaklA----~pd~~VV~i~GDG~~~~mg--~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~ 143 (301)
T PRK05778 70 TLHGRAIAFATGAKLA----NPDLEVIVVGGDGDLASIG--GGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGS 143 (301)
T ss_pred hhhccHHHHHHHHHHH----CCCCcEEEEeCccHHHhcc--HHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCc
Confidence 6789999999999988 478899999999997 455 3458899999999888777775 55543211
Q ss_pred --------cccCCcCHHHHHhhcCeeEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCC
Q 016909 213 --------DQFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRP 283 (380)
Q Consensus 213 --------~~~~~~~~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~ 283 (380)
......|+.+.|+++|+.++ ++.-.++.++.+++++|++ .+||+||++.+--...+ .-....++
T Consensus 144 ~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~----~~GpalIeV~~~C~~~~---~~~~~~~~ 216 (301)
T PRK05778 144 KTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS----HKGFAFIDVLSPCVTFN---GRNTSTKS 216 (301)
T ss_pred ccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh----CCCCEEEEEcCCCCCCC---CcCCcccC
Confidence 00123589999999999986 3344489999999999886 48999999876322211 11223456
Q ss_pred hhHHHHHH
Q 016909 284 VDEIEWWR 291 (380)
Q Consensus 284 ~~e~~~~~ 291 (380)
+.++.+|-
T Consensus 217 ~~~~~~~~ 224 (301)
T PRK05778 217 PAYMREYY 224 (301)
T ss_pred HHHHHHHH
Confidence 66666663
|
|
| >PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.9e-14 Score=133.57 Aligned_cols=114 Identities=15% Similarity=0.063 Sum_probs=86.9
Q ss_pred ccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc--------
Q 016909 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD-------- 213 (380)
Q Consensus 143 g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~-------- 213 (380)
+++|.++|.|+|+++|. +++.||++.|||+++. +.-..+.+|+++++|+++||.||+ |++......
T Consensus 68 ~~~G~alPaAiGaklA~----Pdr~VV~i~GDG~f~~-~g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~ 142 (277)
T PRK09628 68 TTHGRAVAYATGIKLAN----PDKHVIVVSGDGDGLA-IGGNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMW 142 (277)
T ss_pred eccccHHHHHHHHHHHC----CCCeEEEEECchHHHH-hhHHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCce
Confidence 47899999999999884 7899999999999853 112346679999999888777775 665331110
Q ss_pred --------ccCCcCHHHHHhhcCeeEE---EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 214 --------QFRSDGAVVKGRAYGVRSI---RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 214 --------~~~~~~~~~~a~a~G~~~~---~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
..+..|+++.|+++|++++ +|. ++.++.+++++|++ .+||+|||+.+.
T Consensus 143 ~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~--~~~el~~al~~Al~----~~Gp~lIeV~~~ 201 (277)
T PRK09628 143 TVTAQYGNIDPTFDACKLATAAGASFVARESVI--DPQKLEKLLVKGFS----HKGFSFFDVFSN 201 (277)
T ss_pred eeeccCCCcCCCCCHHHHHHHCCCceEEEEccC--CHHHHHHHHHHHHh----CCCCEEEEEcCC
Confidence 0122377999999999975 565 99999999999986 489999999763
|
|
| >TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.8e-14 Score=146.45 Aligned_cols=115 Identities=21% Similarity=0.323 Sum_probs=93.0
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCc-ceee---------e-
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AIST---------P- 210 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~-~i~~---------~- 210 (380)
.|++|+++|.|+|+++|. +++.|||++|||+|++.. .+|.+|.+++||+++||.||+. ++.. .
T Consensus 411 ~g~mG~~l~aaiGa~la~----~~~~vv~~~GDG~f~~~~--~eL~ta~~~~l~~~~vv~NN~~~~~~~~~q~~~~~~~~ 484 (558)
T TIGR00118 411 LGTMGFGLPAAIGAKVAK----PESTVICITGDGSFQMNL--QELSTAVQYDIPVKILILNNRYLGMVRQWQELFYEERY 484 (558)
T ss_pred cccccchhhHHHhhhhhC----CCCcEEEEEcchHHhccH--HHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCce
Confidence 488999999999998884 678999999999998743 4699999999998888888873 4321 0
Q ss_pred -cccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 211 -ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 211 -~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
........|+.+++++||+++++|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 485 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~~~~ 537 (558)
T TIGR00118 485 SHTHMGSLPDFVKLAEAYGIKGIRIE--KPEELDEKLKEALS----SNEPVLLDVVVDK 537 (558)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 0011124689999999999999999 78999999998886 3799999999954
|
Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed. |
| >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-13 Score=144.40 Aligned_cols=115 Identities=25% Similarity=0.346 Sum_probs=93.1
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeee---------c
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP---------I 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~---------~ 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|+.. ..+|.+|.+++||+++||.||+ |++... .
T Consensus 413 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~~~~ 486 (561)
T PRK06048 413 LGTMGYGFPAAIGAKVGK----PDKTVIDIAGDGSFQMN--SQELATAVQNDIPVIVAILNNGYLGMVRQWQELFYDKRY 486 (561)
T ss_pred ccccccHHHHHHHHHHhC----CCCcEEEEEeCchhhcc--HHHHHHHHHcCCCeEEEEEECCccHHHHHHHHHHcCCcc
Confidence 489999999999999984 67899999999999865 3669999999999777766664 654321 0
Q ss_pred ccc--cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~--~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
... ....|+.+.|++||+++++|+ ++.++.+++++|++ .++|+|||+.+.+
T Consensus 487 ~~~~~~~~~d~~~lA~a~G~~~~~v~--t~~el~~al~~a~~----~~~p~liev~~~~ 539 (561)
T PRK06048 487 SHTCIKGSVDFVKLAEAYGALGLRVE--KPSEVRPAIEEAVA----SDRPVVIDFIVEC 539 (561)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 001 134689999999999999998 89999999999875 4799999999954
|
|
| >PRK08611 pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=145.75 Aligned_cols=115 Identities=23% Similarity=0.273 Sum_probs=92.8
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec---------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.||+++|||+|++. ..+|.+|++++||+++||.|| +|++....
T Consensus 407 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~~~~~ 480 (576)
T PRK08611 407 LGTMGCGLPGAIAAKIAF----PDRQAIAICGDGGFSMV--MQDFVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAGELEY 480 (576)
T ss_pred chhhhhhHHHHHHHHHhC----CCCcEEEEEcccHHhhh--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCcc
Confidence 589999999999999874 67899999999999864 467999999999976666555 56643110
Q ss_pred ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.......|+++.|++||+++++|+ +++++..+++++++ .++|+|||+.+.+
T Consensus 481 ~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~vd~ 531 (576)
T PRK08611 481 AIDLSDMDYAKFAEACGGKGYRVE--KAEELDPAFEEALA----QDKPVIIDVYVDP 531 (576)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 111234689999999999999998 99999999998875 4899999999965
|
|
| >PLN02470 acetolactate synthase | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-13 Score=144.60 Aligned_cols=115 Identities=21% Similarity=0.216 Sum_probs=92.5
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeee---------c
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP---------I 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~---------~ 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ |++... .
T Consensus 425 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~v~ivV~NN~~yg~i~~~~~~~~~~~~ 498 (585)
T PLN02470 425 LGAMGFGLPAAIGAAAAN----PDAIVVDIDGDGSFIMN--IQELATIHVENLPVKIMVLNNQHLGMVVQWEDRFYKANR 498 (585)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHHhCCce
Confidence 589999999999999984 67899999999999865 3679999999999777766664 553210 0
Q ss_pred c-ccc--------CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 S-DQF--------RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~-~~~--------~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
. ... ...|+.+.|++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 499 ~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~i~~ 558 (585)
T PLN02470 499 AHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVT--RKSDLREAIQKMLD----TPGPYLLDVIVPH 558 (585)
T ss_pred eeeecCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 0 000 02589999999999999998 99999999999876 4789999999954
|
|
| >TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-13 Score=144.82 Aligned_cols=114 Identities=21% Similarity=0.218 Sum_probs=90.6
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc-----cc
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-----DQ 214 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~-----~~ 214 (380)
..|+||+++|.|+|+++|. ++++|+++|||+|++ ...+|.+|.+++||+++||.|| +|++..... ..
T Consensus 401 ~~g~mG~glpaaiGa~lA~-----~~r~v~i~GDG~f~m--~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~~~~~~ 473 (535)
T TIGR03394 401 YYAGMGFGVPAGIGAQCTS-----GKRILTLVGDGAFQM--TGWELGNCRRLGIDPIVILFNNASWEMLRVFQPESAFND 473 (535)
T ss_pred ccchhhhHHHHHHHHHhCC-----CCCeEEEEeChHHHh--HHHHHHHHHHcCCCcEEEEEECCccceeehhccCCCccc
Confidence 3589999999999999984 345688999999985 4567999999999977666555 577643221 11
Q ss_pred cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 215 FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 215 ~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
+...|+++.|++||+++.+|+ +++++..++++|++. .++|+|||+.+
T Consensus 474 ~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lIev~i 520 (535)
T TIGR03394 474 LDDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFAT---RGRFQLIEAML 520 (535)
T ss_pred CCCCCHHHHHHHcCCCceEeC--CHHHHHHHHHHHHhc---CCCeEEEEEEC
Confidence 235689999999999999999 999999999998863 35689999987
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase. |
| >PRK06456 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-13 Score=144.63 Aligned_cols=116 Identities=23% Similarity=0.251 Sum_probs=94.1
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecc-------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~------- 212 (380)
..|+||+++|.|+|+++|. +++.||+++|||+|+.. ..+|.+|.+++||+++||.||+ |++.....
T Consensus 419 ~~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~~ 492 (572)
T PRK06456 419 GMGTMGFGLPAAMGAKLAR----PDKVVVDLDGDGSFLMT--GTNLATAVDEHIPVISVIFDNRTLGLVRQVQDLFFGKR 492 (572)
T ss_pred CcccccchhHHHHHHHHhC----CCCeEEEEEccchHhcc--hHHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhhCCC
Confidence 3589999999999999984 67899999999999865 3669999999999777776665 66542110
Q ss_pred ---ccc-CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 213 ---DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 ---~~~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
... ...|+++.|++||+++++|+ +++++.+++++|.+ .++|+|||+.+.+
T Consensus 493 ~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~v~~ 546 (572)
T PRK06456 493 IVGVDYGPSPDFVKLAEAFGALGFNVT--TYEDIEKSLKSAIK----EDIPAVIRVPVDK 546 (572)
T ss_pred cccccCCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCc
Confidence 011 24689999999999999998 99999999988875 4799999999965
|
|
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-13 Score=144.68 Aligned_cols=115 Identities=18% Similarity=0.125 Sum_probs=92.8
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-c--cee----e--ec
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-W--AIS----T--PI 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~--~i~----~--~~ 211 (380)
..|+||+++|.|+|+++| +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ | ... . ..
T Consensus 422 ~~gsmG~glpaaiGa~la-----~~~~vv~i~GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~~~~ 494 (569)
T PRK09259 422 TWGVMGIGMGYAIAAAVE-----TGKPVVAIEGDSAFGFS--GMEVETICRYNLPVTVVIFNNGGIYRGDDVNLSGAGDP 494 (569)
T ss_pred CCccccccHHHHHHHHhc-----CCCcEEEEecCcccccc--HHHHHHHHHcCCCEEEEEEeChhHHHHHHHHhhcCCCc
Confidence 358999999999999998 26789999999999864 3569999999999999888887 3 110 0 00
Q ss_pred c-cc-cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 S-DQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~-~~-~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
. .. .+..|+++.|++||+++++|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 495 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~id~ 547 (569)
T PRK09259 495 SPTVLVHHARYDKMMEAFGGVGYNVT--TPDELRHALTEAIA----SGKPTLINVVIDP 547 (569)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 0 11 135689999999999999998 99999999999875 4799999999853
|
|
| >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-13 Score=143.04 Aligned_cols=115 Identities=19% Similarity=0.235 Sum_probs=92.8
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec---------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.++++|+++||.|| +|++....
T Consensus 400 ~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~l~v~ivV~NN~~~~~~~~~~~~~~~~~~ 473 (548)
T PRK08978 400 LGTMGFGLPAAIGAQVAR----PDDTVICVSGDGSFMMN--VQELGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFFDERY 473 (548)
T ss_pred hhhhhchHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 489999999999999884 67899999999999864 366999999999977766655 46543210
Q ss_pred c-ccc-CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 S-DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~-~~~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
. ... ...|+++.|++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 474 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~id~ 526 (548)
T PRK08978 474 SETDLSDNPDFVMLASAFGIPGQTIT--RKDQVEAALDTLLN----SEGPYLLHVSIDE 526 (548)
T ss_pred eecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 0 011 24689999999999999998 99999999998875 4799999999965
|
|
| >COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.6e-12 Score=129.82 Aligned_cols=268 Identities=17% Similarity=0.177 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccccccchhHH--HHHHHHhcCCCC------cEEEc-cccchHH---HH
Q 016909 35 EGVAIKMYNDMVTLQTMDTIFYEAQRQ-GRISFYLTTSGEEA--INIASAAAIKND------DFVVP-QYREPGV---LL 101 (380)
Q Consensus 35 ~~~l~~~y~~M~~~R~~e~~~~~~~~~-g~i~~~~~~~GqEa--~~~~~~~~l~~~------D~v~~-~yR~~~~---~l 101 (380)
+.++.+-+|+.++=...-..+ ...+. .++|-++.+...-| --++....+++. |.|+- .|-..+. ..
T Consensus 74 d~~lErrir~~irWna~a~vl-Raskk~l~lGGH~aSfaSsatlyev~fnhffr~~~~~~ggDlV~~qgHaSPg~yAraf 152 (887)
T COG2609 74 DLELERRIRSLIRWNAHAMVL-RASKKGLELGGHIASFASSATLYEVGFNHFFRAKSEKDGGDLVFFQGHASPGIYARAF 152 (887)
T ss_pred cHHHHHHHHHHHHHHHHHHHH-HccCCCCCccchhhhhhhHHHHHHHHHHHHhcCcCCCCCCceEEEecCCCchHHHHHH
Confidence 345555566555555552222 22222 23433333222112 223445566654 98886 3554443 33
Q ss_pred HcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CC-cccccccccCccHHHHHHHHHhhhc-------CCCceeEEEe
Q 016909 102 WRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HN-YFTVSSTIATQLPHAVGAAYALKMD-------RKDACAVTYF 172 (380)
Q Consensus 102 ~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~-~~-~~~~~g~lG~~~p~AvG~A~A~k~~-------~~~~~vv~~~ 172 (380)
.-|...++-|..|++-. .|.++++.+.... +. ....+++||-|...|+=.|+-.|+- .++++|+||+
T Consensus 153 LeGRlseeqLdnFRqev----~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afL 228 (887)
T COG2609 153 LEGRLTEEQLDNFRQEV----DGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFL 228 (887)
T ss_pred HhccccHHHHHHHHHhc----cCCCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEe
Confidence 46877777788777643 3667776665432 23 3446899999999999999888863 4678999999
Q ss_pred CccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccC-CcCHHHHHhhcCeeEE------------------
Q 016909 173 GDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSI------------------ 232 (380)
Q Consensus 173 GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~~-~~~~~~~a~a~G~~~~------------------ 232 (380)
|||++.|+...+++.+|++++| |+||||+.|....++|+..... ...+...+++.||.++
T Consensus 229 GDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpVrgngkiiqelE~~FrgAGW~VikviWg~~wd~ll~kd~~g 308 (887)
T COG2609 229 GDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELLAKDTGG 308 (887)
T ss_pred cCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCcccCCchhHHHHHHHhccCCceEEEEEecccHHHHhcccCcc
Confidence 9999999999999999999999 9999999999988888754311 1245667788888887
Q ss_pred ---------------------------------------------------EEeCCCHHHHHHHHHHHHHHhhccCCcEE
Q 016909 233 ---------------------------------------------------RVDGNDALAIYSAVHAAREMAIGEGRPIL 261 (380)
Q Consensus 233 ---------------------------------------------------~VdG~D~~av~~a~~~A~~~ar~~~gP~l 261 (380)
.--|||+..|++|+++|.++ .++|++
T Consensus 309 kL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~L~rGGHD~~ki~aA~~~A~~~---kg~Ptv 385 (887)
T COG2609 309 KLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWALNRGGHDPEKVYAAFKKAQEH---KGRPTV 385 (887)
T ss_pred hHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHHHhcCCCCHHHHHHHHHHHhcC---CCCceE
Confidence 12389999999999999986 469999
Q ss_pred EEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCC-CCCHHHHHH
Q 016909 262 IEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNG-WWNGDIESE 317 (380)
Q Consensus 262 Ie~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g-~~t~~~~~~ 317 (380)
|.++|.+.+|--.+-.. -...-..+.+ ..|-|..+|.++ | .++++|+++
T Consensus 386 ilA~TIKGyglg~~~eg--~n~aHq~kkm--~~~~l~~~Rdr~---~ipvsd~e~e~ 435 (887)
T COG2609 386 ILAKTIKGYGLGEAAEG--KNIAHQVKKM--TPDQLKEFRDRF---GIPVSDAELEE 435 (887)
T ss_pred EEEeeeccccCchhhcc--cchhhhhhcC--CHHHHHHHHhhc---CCCCchhhhhc
Confidence 99999888764321111 0111122222 245577788876 3 357777766
|
|
| >PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.6e-13 Score=129.00 Aligned_cols=115 Identities=11% Similarity=0.100 Sum_probs=89.7
Q ss_pred ccccCccHHHHHHHHHhhhcCCCceeEEEeCccccC-cchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecc--------
Q 016909 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 212 (380)
Q Consensus 143 g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~-------- 212 (380)
+.+|.++|.|+|+++| ++++.||++.|||++. .| ...|.+|+++++|+++||.||+ |++...+.
T Consensus 60 ~~mG~alp~AiGaklA----~pd~~VVai~GDG~~~~iG--~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~ 133 (280)
T PRK11869 60 TLHGRAIPAATAVKAT----NPELTVIAEGGDGDMYAEG--GNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGF 133 (280)
T ss_pred cccccHHHHHHHHHHH----CCCCcEEEEECchHHhhCc--HHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCc
Confidence 5589999999999887 4788999999999986 33 3559999999999888887776 55432111
Q ss_pred --------cccCCcCHHHHHhhcCeeEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 213 --------DQFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 213 --------~~~~~~~~~~~a~a~G~~~~~V-dG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
......|+.++|+++|++++.. +-.++.++.+++++|++ .+||+||++.+.
T Consensus 134 ~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~----~~Gp~lIeV~~p 193 (280)
T PRK11869 134 KTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIK----HKGLAIVDIFQP 193 (280)
T ss_pred ccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHh----CCCCEEEEEECC
Confidence 0112358999999999998873 24499999999999997 489999999873
|
|
| >PRK06276 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.1e-13 Score=141.81 Aligned_cols=115 Identities=26% Similarity=0.348 Sum_probs=92.7
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec---------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|+.. ..+|.+|.+++||+++||.||+ |++....
T Consensus 418 ~gsmG~~lpaaiGa~la~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~~~g~~~~~~~~~~~~~~ 491 (586)
T PRK06276 418 LGTMGFGFPAAIGAKVAK----PDANVIAITGDGGFLMN--SQELATIAEYDIPVVICIFDNRTLGMVYQWQNLYYGKRQ 491 (586)
T ss_pred ccccccchhHHHhhhhhc----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHhCCCc
Confidence 479999999999999984 67889999999999865 3569999999999877776665 6543211
Q ss_pred ccc-c-CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 SDQ-F-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~-~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
... . ...|+.+.+++||+++++|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 492 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 544 (586)
T PRK06276 492 SEVHLGETPDFVKLAESYGVKADRVE--KPDEIKEALKEAIK----SGEPYLLDIIIDP 544 (586)
T ss_pred ccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecc
Confidence 001 1 24689999999999999998 99999999998875 4799999999854
|
|
| >PRK07282 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-13 Score=142.96 Aligned_cols=115 Identities=23% Similarity=0.360 Sum_probs=90.5
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec--------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~-------- 211 (380)
..|+||+++|.|+|+++|. +++.||+++|||+|++. ..+|.+|.+++||+++||.|| +|++....
T Consensus 416 ~~g~mG~glpaaiGa~lA~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~q~~~~~~~ 489 (566)
T PRK07282 416 GLGTMGFGIPAAIGAKIAN----PDKEVILFVGDGGFQMT--NQELAILNIYKVPIKVVMLNNHSLGMVRQWQESFYEGR 489 (566)
T ss_pred ccccccchhhHhheeheec----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCCchHHHHHHHHHhCCC
Confidence 3589999999999998884 68899999999999864 366999999999977766555 46653211
Q ss_pred -c-ccc-CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 -S-DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 -~-~~~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
. ..+ ...|+++.|++||+++.+|+ ++.++.++++ +.. .++|+|||+.+.+
T Consensus 490 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~-~~~----~~~p~lIeV~v~~ 542 (566)
T PRK07282 490 TSESVFDTLPDFQLMAQAYGIKHYKFD--NPETLAQDLE-VIT----EDVPMLIEVDISR 542 (566)
T ss_pred cccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHH-Hhc----CCCCEEEEEEeCC
Confidence 1 111 34689999999999999998 8999988886 332 4799999999965
|
|
| >PRK07789 acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-13 Score=144.46 Aligned_cols=116 Identities=23% Similarity=0.326 Sum_probs=92.5
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec---------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.|+|++|||+|+.. ..+|.+|++++||+++||.||+ |++....
T Consensus 446 ~G~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~ 519 (612)
T PRK07789 446 LGTMGYAVPAAMGAKVGR----PDKEVWAIDGDGCFQMT--NQELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERY 519 (612)
T ss_pred cccccchhhhHHhhhccC----CCCcEEEEEcchhhhcc--HHHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCCCc
Confidence 478999999999999884 67899999999999854 4679999999999777666554 7643210
Q ss_pred c-ccc-----CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 S-DQF-----RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~-~~~-----~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
. ... ...|+++.|++||+++.+|+ +++++..++++|++. .++|+|||+.+.+
T Consensus 520 ~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~---~~~p~lIev~i~~ 577 (612)
T PRK07789 520 SNTDLHTHSHRIPDFVKLAEAYGCVGLRCE--REEDVDAVIEKARAI---NDRPVVIDFVVGK 577 (612)
T ss_pred ceeecCcCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEECC
Confidence 0 000 12589999999999999998 999999999998863 3689999999954
|
|
| >TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-12 Score=124.13 Aligned_cols=113 Identities=14% Similarity=0.149 Sum_probs=84.9
Q ss_pred ccccCccHHHHHHHHHhhhcCCCceeEEEeCccccC-cchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecccc------
Q 016909 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQ------ 214 (380)
Q Consensus 143 g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~~------ 214 (380)
+.+|.++|+|+|+++| .+++.|||+.|||++. .| ...|.+|+++++|+++||.||+ |++.......
T Consensus 53 t~mG~alPaAiGaklA----~Pd~~VVai~GDG~f~~mg--~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~ 126 (287)
T TIGR02177 53 GLHGRALPVATGIKLA----NPHLKVIVVGGDGDLYGIG--GNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGV 126 (287)
T ss_pred cccccHHHHHHHHHHH----CCCCcEEEEeCchHHHhcc--HHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCc
Confidence 5579999999999887 4789999999999973 55 3559999999999888887775 5554311100
Q ss_pred -c-----------CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 215 -F-----------RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 215 -~-----------~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
. ...++..+|.++|+.+...- .++.++.+++++|++ .+||+||++.+
T Consensus 127 ~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~-~~~~eL~~ai~~Al~----~~GpslIeV~~ 185 (287)
T TIGR02177 127 KTKSLPYPNIQDPVNPLLLAIALGYTFVARGFS-GDVAHLKEIIKEAIN----HKGYALVDILQ 185 (287)
T ss_pred ceeecccCccCCCCCHHHHHHhCCCCeEEEEec-CCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 0 02245677888887776632 489999999999986 48999999986
|
Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes. |
| >PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-13 Score=142.87 Aligned_cols=112 Identities=21% Similarity=0.153 Sum_probs=89.3
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec----c----
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI----S---- 212 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~----~---- 212 (380)
.+++|+++|.|+|+++| +++.|||++|||+|++.. .+|.+|+++++|+++||.||+ |++.... .
T Consensus 424 ~~~~G~~lpaaiGaala-----~~~~vv~i~GDGsf~~~~--~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~~~~ 496 (568)
T PRK07449 424 ASGIDGLLSTAAGVARA-----SAKPTVALIGDLSFLHDL--NGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEEPVF 496 (568)
T ss_pred ccchhhHHHHHHHHHhc-----CCCCEEEEechHHhhcCc--HHHHhhcccCCCeEEEEEECCCCccccCCCCCCCcchh
Confidence 36799999999999987 377899999999998653 558999999999777666665 6642111 0
Q ss_pred ----cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 213 ----DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 213 ----~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
......|+++.|++||+++++|+ +++++.+++++|++ .++|+|||+.+
T Consensus 497 ~~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a~~----~~~p~lIev~i 548 (568)
T PRK07449 497 ERFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADALP----TPGLTVIEVKT 548 (568)
T ss_pred hHhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHHhc----CCCCEEEEEeC
Confidence 01124689999999999999998 99999999999874 47999999987
|
|
| >PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-12 Score=124.57 Aligned_cols=115 Identities=20% Similarity=0.251 Sum_probs=90.3
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCcc-ccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecccc-----
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQ----- 214 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG-~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~~----- 214 (380)
.+.+|.++|+|+|+++| .++..||++.||| +++.|. ..|..|+++++|+++||.||+ |++...+...
T Consensus 58 ~~~~G~alp~A~GaklA----~Pd~~VV~i~GDG~~f~ig~--~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g 131 (279)
T PRK11866 58 HGIHGRVLPIATGVKWA----NPKLTVIGYGGDGDGYGIGL--GHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRG 131 (279)
T ss_pred ccccccHHHHHHHHHHH----CCCCcEEEEECChHHHHccH--HHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCC
Confidence 57789999999999998 4788999999999 688774 559999999999888887775 5554311110
Q ss_pred -----c------CCcCHHHHHhhcCeeEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 215 -----F------RSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 215 -----~------~~~~~~~~a~a~G~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
+ ...|+.+.|+++|++.+. ....++.++.+++++|++ .+||.||++..
T Consensus 132 ~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~----~~Gps~I~v~~ 191 (279)
T PRK11866 132 VKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIK----HKGFSFIDVLS 191 (279)
T ss_pred ceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 0 012899999999998664 455799999999999986 48999999976
|
|
| >PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-12 Score=125.29 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=88.3
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccc-cCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGG-TSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------ 213 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~-~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~------ 213 (380)
.+++|.++|.|+|+++| .+++.||++.|||+ ++.|. ..|.+|+++++|+++||.||+ |++......
T Consensus 68 ~g~mG~alpaAiGaklA----~Pd~~VV~i~GDG~~f~mg~--~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g 141 (286)
T PRK11867 68 HTIHGRALAIATGLKLA----NPDLTVIVVTGDGDALAIGG--NHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVG 141 (286)
T ss_pred hhhhhcHHHHHHHHHHh----CCCCcEEEEeCccHHHhCCH--HHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCC
Confidence 37899999999999988 47899999999996 77664 458899999999887776665 665432110
Q ss_pred -c---------cCCcCHHHHHhhcCeeEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 214 -Q---------FRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 -~---------~~~~~~~~~a~a~G~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
. ....++.++|.++|...+. +.-.++.++.+++++|++ .+||+|||+.+
T Consensus 142 ~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~----~~Gp~lIev~~ 201 (286)
T PRK11867 142 FVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAIN----HKGFSFVEILQ 201 (286)
T ss_pred cccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 0 0124788999999998764 344589999999999986 47999999976
|
|
| >TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=130.89 Aligned_cols=119 Identities=16% Similarity=0.093 Sum_probs=90.7
Q ss_pred ccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeeccc----
Q 016909 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD---- 213 (380)
Q Consensus 139 ~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~~---- 213 (380)
....++||.++|.|+|+++| .+++.||+++|||+|..... .+|.+|.++++|+++||.|| .|++......
T Consensus 399 ~~~~~~mG~~~~~AiGa~~a----~p~~~Vv~i~GDG~f~~~g~-~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~ 473 (595)
T TIGR03336 399 VDTTLCMGASIGVASGLSKA----GEKQRIVAFIGDSTFFHTGI-PGLINAVYNKANITVVILDNRITAMTGHQPNPGTG 473 (595)
T ss_pred cceeeccCchHHHHhhhhhc----CCCCCEEEEeccchhhhcCH-HHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCC
Confidence 33468999999999999887 46789999999999974222 45888999999987777666 5766542211
Q ss_pred ------ccCCcCHHHHHhhcCeeEEEEe-CCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 214 ------QFRSDGAVVKGRAYGVRSIRVD-GNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 ------~~~~~~~~~~a~a~G~~~~~Vd-G~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
.....|+.+.++++|+++++|. -.+..++.++++++++ .++|++|++..
T Consensus 474 ~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~----~~gp~li~v~~ 529 (595)
T TIGR03336 474 VTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALA----AEGVSVIIAKQ 529 (595)
T ss_pred CCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHh----cCCCEEEEEcc
Confidence 0124689999999999999986 3455777888888875 47999999865
|
Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase. |
| >COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-11 Score=123.62 Aligned_cols=165 Identities=21% Similarity=0.244 Sum_probs=115.7
Q ss_pred chhHHHHHHHHhcCCCCcEEEccccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccH
Q 016909 71 SGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLP 150 (380)
Q Consensus 71 ~GqEa~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p 150 (380)
+-|+-..-.++..|+++|+|+.- .| ..+||- ..+. .+.....-..+-+|++|+.+|
T Consensus 363 Ltq~~~w~~~~~fl~p~dviiae---tG-------------tS~FG~-------~~~~-lP~~~~~i~Q~lWGSIG~t~p 418 (557)
T COG3961 363 LTQEWLWNTVQNFLKPGDVIIAE---TG-------------TSFFGA-------LDIR-LPKGATFISQPLWGSIGYTLP 418 (557)
T ss_pred ccHHHHHHHHHhhCCCCCEEEEc---cc-------------cccccc-------eeee-cCCCCeEEcccchhhcccccH
Confidence 55777777888899999999863 11 113331 1110 001011112344799999999
Q ss_pred HHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeeccccc------CCcCHHHH
Q 016909 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQF------RSDGAVVK 223 (380)
Q Consensus 151 ~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~------~~~~~~~~ 223 (380)
.|+|+++|. +++++|+|+||||+|. .-+++.+-.+|+| |+|||++|++|.|....+... ..-++.++
T Consensus 419 AalGa~~A~----~drR~IL~iGDGs~Ql--TvQEiStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~YNdI~~Wd~~~l 492 (557)
T COG3961 419 AALGAALAA----PDRRVILFIGDGSLQL--TVQEISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAPYNDIQSWDYTAL 492 (557)
T ss_pred hhhhhhhcC----CCccEEEEEcCchhhh--hHHHHHHHHHcCCCcEEEEEcCCCcEEEehhcCCCcCcccccccchhhh
Confidence 999999996 5789999999999984 5567999999999 899999999999987665522 12468889
Q ss_pred HhhcCeeEEEE--eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 224 GRAYGVRSIRV--DGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 224 a~a~G~~~~~V--dG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.++||..-... .-...+.+..++..+.+. .+++.||||++.+
T Consensus 493 ~~afg~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~i~lIEv~lp~ 536 (557)
T COG3961 493 PEAFGAKNGEAKFRATTGEELALALDVAFAN---NDRIRLIEVMLPV 536 (557)
T ss_pred hhhcCCCCceEEEeecChHHHHHHHHHHhcC---CCceEEEEEecCc
Confidence 99998643322 223556666777766653 5789999999854
|
|
| >PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.4e-11 Score=114.86 Aligned_cols=130 Identities=18% Similarity=0.143 Sum_probs=101.4
Q ss_pred CCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc-
Q 016909 136 HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD- 213 (380)
Q Consensus 136 ~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~- 213 (380)
.+.....+.+|.+.++|.|++.|.+..+++..||++.|||++..-.+ ++|.-|...+.|+++||.||. |+.++-+..
T Consensus 62 ~~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~-~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~ 140 (299)
T PRK11865 62 WNVPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGF-QSLSGAMERGHNILYLMYDNEAYMNTGIQRSG 140 (299)
T ss_pred cccccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccH-HHHHHHHHcCCCeEEEEECCccccCCCCCCCC
Confidence 34556678999999999999999887777789999999999843333 789999999999999998887 443321111
Q ss_pred --------------------ccCCcCHHHHHhhcCeeEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016909 214 --------------------QFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 214 --------------------~~~~~~~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 270 (380)
.....|+..++.++|++.+ +++-.++.++.+++++|.+ .+||.||++.+--.-
T Consensus 141 ~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~----~~Gps~I~v~sPC~~ 214 (299)
T PRK11865 141 STPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE----VEGPAYIQVLQPCPT 214 (299)
T ss_pred CCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEECCCCC
Confidence 1124578899999999866 5677799999999999986 489999999875443
|
|
| >PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.7e-11 Score=116.02 Aligned_cols=170 Identities=24% Similarity=0.296 Sum_probs=111.0
Q ss_pred cccccccchhHHHHHHHHhcCCC--CcEEEccccchHHHH--H----cC----------CC---HHHHHHHhhcCCCCCC
Q 016909 64 ISFYLTTSGEEAINIASAAAIKN--DDFVVPQYREPGVLL--W----RG----------FS---MQEFANQCFGNKADYG 122 (380)
Q Consensus 64 i~~~~~~~GqEa~~~~~~~~l~~--~D~v~~~yR~~~~~l--~----~G----------~~---~~~~l~e~~g~~~~~~ 122 (380)
+|.|-++.|+..+.+++...++. .|.++.+--||+... + -| .+ +..++.+| +
T Consensus 47 lGHWGt~PGlnfiyahlNrlI~~~~~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~~F-------S 119 (379)
T PF09364_consen 47 LGHWGTSPGLNFIYAHLNRLIRKYDLDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFRQF-------S 119 (379)
T ss_dssp -S-TTTHHHHHHHHHHHHHHHHHHTB-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHHHB-------T
T ss_pred ccccCCCccHHHHHHHHHHHHHhcCCceEEEecCCCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHHhC-------C
Confidence 46788899999999999988874 577777777775221 1 12 11 22333333 2
Q ss_pred CCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHc---C-C-C--
Q 016909 123 KGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT---E-A-P-- 195 (380)
Q Consensus 123 ~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~---~-L-p-- 195 (380)
--.++++|.+...+|.+.-.|-||..+++|.|+++ ++++.+|+|++|||++.+|. +|+.| + | |
T Consensus 120 ~PgGipSH~~p~tPGsIhEGGELGYaLshA~GA~~----DnPdliv~~vvGDGEaETGp------lA~sWh~~kflnP~~ 189 (379)
T PF09364_consen 120 FPGGIPSHVSPETPGSIHEGGELGYALSHAFGAVF----DNPDLIVACVVGDGEAETGP------LAASWHSNKFLNPAT 189 (379)
T ss_dssp STTSB-SSS-TTSTT-S---SSTS-HHHHHHHHHT----T-TT-EEEEEEETTGGGSHH------HHHHGGGGGSS-TTT
T ss_pred CCCCCccccCcCCCCccCcCcchhhHHHHHhhccc----CCCCeEEEEEecCCcccCCc------ccccccccceeCccc
Confidence 23468899998889999999999999999999986 46999999999999999885 23333 2 1 3
Q ss_pred ---EEEEEEcCCcceeeecccc-cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHH
Q 016909 196 ---VIFICRNNGWAISTPISDQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAR 250 (380)
Q Consensus 196 ---vi~vv~NN~~~i~~~~~~~-~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~ 250 (380)
|+-|+.=|+|.|+.++--. .+...+.+.+++||+..+.|+|.|+.++...+..++
T Consensus 190 dGaVLPILhLNG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~al 248 (379)
T PF09364_consen 190 DGAVLPILHLNGYKISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAAL 248 (379)
T ss_dssp S-EEEEEEEE-SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHH
T ss_pred CceeeceEEecCccccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHH
Confidence 7778889999999887532 344568899999999999999999988877665543
|
PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A. |
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=99.20 E-value=4e-11 Score=139.32 Aligned_cols=116 Identities=17% Similarity=0.130 Sum_probs=91.4
Q ss_pred cccccccC--ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHc--CCCEEEEEEcCC-cceeeec---
Q 016909 140 TVSSTIAT--QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--EAPVIFICRNNG-WAISTPI--- 211 (380)
Q Consensus 140 ~~~g~lG~--~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~--~Lpvi~vv~NN~-~~i~~~~--- 211 (380)
.+.|.+|. ++|.|+|+++|. +++|+|++|||+|+.. ..+|.+|+++ ++|+++||.||+ |++....
T Consensus 756 ~~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~m~--~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~ 828 (1655)
T PLN02980 756 GNRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFLHD--TNGLSILSQRIARKPMTILVINNHGGAIFSLLPIA 828 (1655)
T ss_pred ecCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHHhh--hhHHHHhhcccCCCCEEEEEEeCCCcHhhhcCccC
Confidence 45688988 599999999884 6789999999999753 4669999884 999877777666 5543210
Q ss_pred ---c-----c---ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 ---S-----D---QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ---~-----~---~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
. . .....++.+.|++||+++.+|+ +++++.++++++.+ .++|+|||+.|.|
T Consensus 829 ~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~--~~~eL~~aL~~a~~----~~~p~lIEV~t~~ 890 (1655)
T PLN02980 829 KRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVG--TKSELEDALFTSQV----EQMDCVVEVESSI 890 (1655)
T ss_pred CCCcchhHHHHhcCCCCCCHHHHHHHcCCceeecC--CHHHHHHHHHHhhc----cCCCEEEEEecCh
Confidence 0 0 0124689999999999999999 99999999988774 5899999999954
|
|
| >KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-10 Score=114.38 Aligned_cols=119 Identities=20% Similarity=0.199 Sum_probs=91.4
Q ss_pred ccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-C-cceeeecc----
Q 016909 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-G-WAISTPIS---- 212 (380)
Q Consensus 139 ~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~-~~i~~~~~---- 212 (380)
.++.|.||-|++.|+++|++ .+++.|+|+.||++|.-. .-++.++.+||||||.||.|| + |+.+....
T Consensus 426 aGtfgTMGVG~Gfalaaa~~----~P~~~V~~veGDsaFGfS--aME~ET~vR~~Lpvv~vV~NN~Giyg~d~~~~~~I~ 499 (571)
T KOG1185|consen 426 AGTFGTMGVGLGFALAAALA----APDRKVVCVEGDSAFGFS--AMELETFVRYKLPVVIVVGNNNGIYGLDDDGWKQIS 499 (571)
T ss_pred CccccccccchhHHHHHHhh----CCCCeEEEEecCcccCcc--hhhHHHHHHhcCCeEEEEecCCcccccCcccHHHHh
Confidence 34568888887777777776 499999999999999532 234889999999988888766 3 33332211
Q ss_pred -----------cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 213 -----------DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 -----------~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.-..+.++.+.+++||..++.|+ .++++..++++++.. +++|++|.+..-+
T Consensus 500 e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~q~---~~~psvINVlI~p 561 (571)
T KOG1185|consen 500 EQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQACQD---TDKPSVINVLIGP 561 (571)
T ss_pred hcCcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHHhc---CCCCeEEEEEecc
Confidence 11234578899999999999999 999999999998864 7799999998744
|
|
| >KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-09 Score=106.23 Aligned_cols=116 Identities=21% Similarity=0.233 Sum_probs=93.1
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcc-eeeec--------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA-ISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~-i~~~~-------- 211 (380)
.-|.||.|+|.|+|+..| +++.+||-+-||++|.+. ...|.++.+.++||-+++-||.-+ +-+..
T Consensus 522 GLGtMGfGLPAAIGAsVA----~P~~iViDIDGDaSF~Mt--~~ELat~rq~~~PVKiLiLNNeeqGMVtQWq~lFYe~r 595 (675)
T KOG4166|consen 522 GLGTMGFGLPAAIGASVA----NPDAIVIDIDGDASFIMT--VQELATIRQENLPVKILILNNEEQGMVTQWQDLFYEAR 595 (675)
T ss_pred CccccccCcchhhccccc----CcccEEEeccCCceeeee--hHhhhhhhhcCCceEEEEecchhhhhHHHHHHHHHHhh
Confidence 357899999999999887 589999999999999743 355999999999999999898632 22211
Q ss_pred --ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 --SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 --~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
+...-++++.++|+++|+++.+|. .-+++.+.+++.+. .+||+|+|+.+-.
T Consensus 596 ysHThQ~nPnf~klA~AmGikalRV~--K~edL~~k~kefls----TkGPvLleV~v~~ 648 (675)
T KOG4166|consen 596 YSHTHQENPNFLKLAAAMGIKALRVT--KKEDLREKIKEFLS----TKGPVLLEVIVPH 648 (675)
T ss_pred hccccccCccHHHHHHhcCCchheee--hHHHHHHHHHHHhC----CCCCeEEEEEccC
Confidence 111235789999999999999998 77888888888775 6899999998844
|
|
| >COG3960 Glyoxylate carboligase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.4e-09 Score=102.80 Aligned_cols=159 Identities=21% Similarity=0.219 Sum_probs=115.9
Q ss_pred HHHHHhhcCCCCCCCCCCC-------ccccCCCCCC-cccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcc
Q 016909 109 EFANQCFGNKADYGKGRQM-------PIHYGSNKHN-YFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180 (380)
Q Consensus 109 ~~l~e~~g~~~~~~~G~~~-------~~H~~~~~~~-~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG 180 (380)
+-|.+.||+...+..--++ ..|...+..- .-+..|++|+.+|.|+|...| .+++.++++.||-.|+
T Consensus 377 eemn~~fgrd~~yvstiglsqia~aqflhv~~pr~wincgqagplgwtipaalgv~~a----dp~r~vvalsgdydfq-- 450 (592)
T COG3960 377 EEMNKAFGRDVCYVTTIGLSQIAAAQFLHVFKPRHWINCGQAGPLGWTIPAALGVCAA----DPKRNVVAISGDYDFQ-- 450 (592)
T ss_pred HHHHhhcCCceeEEEeccHHHHhhhhhhhhcCCcceeecCccCCcccccchhhceeec----CCCCceEEeecCchHH--
Confidence 4567778876654221111 1233322111 123468999999999998655 6889999999999998
Q ss_pred hHHHHHHHHHHcCCCEEEEEEcCCcce---------eeeccccc------------CCcCHHHHHhhcCeeEEEEeCCCH
Q 016909 181 DFHAALNFSAVTEAPVIFICRNNGWAI---------STPISDQF------------RSDGAVVKGRAYGVRSIRVDGNDA 239 (380)
Q Consensus 181 ~~~Eal~~A~~~~Lpvi~vv~NN~~~i---------~~~~~~~~------------~~~~~~~~a~a~G~~~~~VdG~D~ 239 (380)
...|.|...+++|||-|+|+.||.|-- +.....+. ..-|..+.++++|++.++|- ++
T Consensus 451 fmieelavgaq~k~pyihv~vnnaylglirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv~--~p 528 (592)
T COG3960 451 FLIEELAVGAQFKIPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KP 528 (592)
T ss_pred HHHHHHhhhhcccCceEEEEecchHHHHHHHHHhcCCccceeeehhhccCCccccccCccceeehhccCceeEEec--Ch
Confidence 467999999999999999999998721 11100010 12355678899999999998 99
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016909 240 LAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 240 ~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
+++..++.+|.....+..-|++||+..-|...-+.+
T Consensus 529 ~e~a~af~~a~~lm~eh~vpvvve~ilervtnismg 564 (592)
T COG3960 529 EDIAPAFEQAKALMAQHRVPVVVEVILERVTNISMG 564 (592)
T ss_pred HHhhHHHHHHHHHHHhcCCCeeeehHHHHhhccccc
Confidence 999999999998888889999999999887765544
|
|
| >KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.9e-09 Score=103.40 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=91.4
Q ss_pred ccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeeccccc--
Q 016909 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQF-- 215 (380)
Q Consensus 139 ~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~-- 215 (380)
....|++|+.+|.++|+++|. ++++||+|+|||++|+ ..+.+.+..+|+| |.||+++|++|.|....+...
T Consensus 411 q~~wgsIG~svga~lG~a~a~----~e~rvilfiGDGs~ql--TvQeiStmir~gl~~~if~~NN~GYTIE~~IH~~~Yn 484 (561)
T KOG1184|consen 411 QMQWGSIGWSVGATLGYAQAA----PEKRVILFIGDGSFQL--TVQEISTMIRWGLKPIIFLINNGGYTIEVEIHDGPYN 484 (561)
T ss_pred EEEEeeccccchhhhhhhhcc----CCceEEEEecCcccee--eHHHHHHHHhcCCCcEEEEEeCCceEEEEeecCCCcc
Confidence 344799999999999999986 5689999999999986 3455889999999 699999999999987665421
Q ss_pred --CCcCHHHHHhhcCeeE---EEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 216 --RSDGAVVKGRAYGVRS---IRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 216 --~~~~~~~~a~a~G~~~---~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
.+-++.++.++||..- ....-..-.+..++.+.+... +.++|.||||+.
T Consensus 485 ~I~~Wd~~~l~~afg~~~gk~~~~~v~~~~e~~~~~~~~~~~--~~~~i~liEv~l 538 (561)
T KOG1184|consen 485 DIQNWDYTALLEAFGAGEGKYETHKVRTEEELVEAIKDATFE--KNDKIRLIEVIL 538 (561)
T ss_pred ccccchHHHHHHhhcCccceeEEeeeccchHHHHHHhhhhhc--ccCceEEEEEec
Confidence 1247888999998533 222222455677777777632 467899999987
|
|
| >COG3962 Acetolactate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-07 Score=94.36 Aligned_cols=115 Identities=17% Similarity=0.258 Sum_probs=89.0
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeec---------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~--------- 211 (380)
.+.||.-+.-++|+. +..+++-|++++||||+. +.+..|.++..+++.+++++ +|-+|+.....
T Consensus 443 fSCMGYEiaG~lG~K----~a~pdreV~vmVGDGSym--MlnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~sf 516 (617)
T COG3962 443 FSCMGYEIAGGLGAK----AAEPDREVYVMVGDGSYM--MLNSELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGASF 516 (617)
T ss_pred ccccccccccccccc----cCCCCCeEEEEEcccchh--hhhHHHHHHHHcCCeEEEEEECCCCcchhhhhhhhcCcchh
Confidence 467788777777764 557889999999999997 57888999999999866655 55566532111
Q ss_pred ---------ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 ---------SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ---------~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
+......|+++.|++||+.+++|. +++++..+++.|.+ ..++++|+++|..
T Consensus 517 ~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL~aAL~~Ak~----~~~ttvi~I~t~P 576 (617)
T COG3962 517 NNLLRDTDHEEEILQVDFAAHAESYGAKAYKVG--TIEELEAALADAKA----SDRTTVIVIDTDP 576 (617)
T ss_pred hhhhhhhcccCCCCcccHHHHHhhcCceeEecC--CHHHHHHHHHHHHh----CCCCEEEEEecCC
Confidence 022445689999999999999998 89888888777665 6899999999855
|
|
| >COG3957 Phosphoketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.2e-07 Score=94.05 Aligned_cols=168 Identities=20% Similarity=0.213 Sum_probs=119.6
Q ss_pred cccccccchhHHHHHHHHhcCCCC--cEEEccccchHHHH------HcCC--------C-----HHHHHHHhhcCCCCCC
Q 016909 64 ISFYLTTSGEEAINIASAAAIKND--DFVVPQYREPGVLL------WRGF--------S-----MQEFANQCFGNKADYG 122 (380)
Q Consensus 64 i~~~~~~~GqEa~~~~~~~~l~~~--D~v~~~yR~~~~~l------~~G~--------~-----~~~~l~e~~g~~~~~~ 122 (380)
++.|-++.|+--+.++....++.. +.++.+-.||+... .-|. + +.+++.+|.
T Consensus 60 lGHwGt~pg~s~~Y~H~nr~i~~~d~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~qFs------- 132 (793)
T COG3957 60 LGHWGTQPGLSFIYAHLNRLISKYDANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFKQFS------- 132 (793)
T ss_pred cccccCCCCchhhhhhhhHHHHhhCcceEEEecCCCCcceeeeccccCCccccccccccccHHHHHHHHHhcc-------
Confidence 467888899998888888877754 44444444553211 1221 1 223344443
Q ss_pred CCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHc--CC------
Q 016909 123 KGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--EA------ 194 (380)
Q Consensus 123 ~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~--~L------ 194 (380)
--.|+++|.....+|.+...|.||+++..|.|+|+ ..++.++.|++|||+..+|. +.++..- -+
T Consensus 133 ~PgGi~SH~~petPGsIhEGGeLGy~l~ha~gAa~----d~Pdli~~~vvGDGeaetgp----latsWhs~kf~np~~dG 204 (793)
T COG3957 133 FPGGIGSHVAPETPGSIHEGGELGYALSHAYGAAF----DNPDLIVACVVGDGEAETGP----LATSWHSNKFLNPARDG 204 (793)
T ss_pred CCCCcccccCCCCCCccCcCcchhHHHHHHHHhhc----CCCCcEEEEEecccccccCc----cccccccccccCccccC
Confidence 23458899998889999999999999999999886 46899999999999776664 3333221 12
Q ss_pred CEEEEEEcCCcceeeecccc-cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHH
Q 016909 195 PVIFICRNNGWAISTPISDQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAV 246 (380)
Q Consensus 195 pvi~vv~NN~~~i~~~~~~~-~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~ 246 (380)
.++-|..-|+|.|+.++... .+...+.+.+++||++-+.|+|+|+.++...+
T Consensus 205 avLPIL~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~m 257 (793)
T COG3957 205 AVLPILHLNGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQLM 257 (793)
T ss_pred ceeeEEEecceeccCceeeeecChHHHHHHHhhCCCceeEecCCChHHhhhhH
Confidence 37888889999999887643 24456889999999999999999988854444
|
|
| >COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.46 E-value=7e-06 Score=79.55 Aligned_cols=149 Identities=17% Similarity=0.169 Sum_probs=100.4
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccc-cCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecccc----
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGG-TSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQ---- 214 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~-~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~~---- 214 (380)
..+.-|-..+.|.|+.+|. ++..||++.|||. +..|. ..+.-|...+.+|.+||.||. |+.++-+...
T Consensus 68 ~hs~~gra~a~atGik~A~----~~l~Viv~gGDG~~~dIG~--~~l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp~ 141 (294)
T COG1013 68 VHSLHGRAAAVATGIKLAN----PALSVIVIGGDGDAYDIGG--NHLIHALRRNHDITYIVVDNEVYGNTGGQASPTTPK 141 (294)
T ss_pred eeeccCcchhhHHHHHHhc----cCCeEEEEecchhHhhhhh--HHHHHHHHcCCCeEEEEECCeecccCCCccCCCCCC
Confidence 3567788899999998886 4568999999995 56664 347778889999999888887 4433211111
Q ss_pred ------------c-CCcCHHHHHhhcCeeEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCC
Q 016909 215 ------------F-RSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTK 280 (380)
Q Consensus 215 ------------~-~~~~~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~ 280 (380)
. ..-|+..++.++|...+ ++.--++..+.+.+++|+++ +||.||++.+--..+ -+. ..
T Consensus 142 G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~~----~Gps~I~v~sPC~t~---~~~-~~ 213 (294)
T COG1013 142 GAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAEH----KGPSFIDVLSPCPTG---NGR-NT 213 (294)
T ss_pred CceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHhc----cCCeEEEEecCCCCC---CCc-cc
Confidence 1 22378899999998755 45555799999999999985 699999998733221 111 12
Q ss_pred CCChhHHHHHH-hCCChHHHHHHH
Q 016909 281 YRPVDEIEWWR-TTQDPVTRFRKW 303 (380)
Q Consensus 281 Yr~~~e~~~~~-~~~DPi~~~~~~ 303 (380)
+..-++...|- ...+|+-++...
T Consensus 214 ~~~~~~~~~ave~g~~pl~~~~~~ 237 (294)
T COG1013 214 MKTIEEAKLAVETGYWPLYRYEPG 237 (294)
T ss_pred chHHHHHHHHHhcCCceeeeccCc
Confidence 33344444442 245666665543
|
|
| >COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.3e-05 Score=81.55 Aligned_cols=118 Identities=22% Similarity=0.202 Sum_probs=86.7
Q ss_pred CcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccC-cchHHHHHHHHHHcCCCEEEEEEcCCc-ceeeecccc
Q 016909 137 NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGW-AISTPISDQ 214 (380)
Q Consensus 137 ~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~NN~~-~i~~~~~~~ 214 (380)
+...++-.+|.++++|-|++++. .+++|+++|||.|. .|. .+|.-|...+.|++++|-+|.+ ++++.+..-
T Consensus 422 ~~~d~t~~mGssig~a~g~~~~~-----~k~~va~iGDsTF~HsGi--~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~p 494 (640)
T COG4231 422 NTVDTTTMMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHSGI--LALINAVYNKANILVVVLDNRTTAMTGGQPHP 494 (640)
T ss_pred chhhhhhhccchhhhcccccccc-----CCceEEEeccccccccCc--HHHHHHHhcCCCeEEEEEeccchhccCCCCCC
Confidence 33444567888888888888764 37899999999994 443 3477788889998887777776 444433211
Q ss_pred ----------cCCcCHHHHHhhcCeeEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016909 215 ----------FRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 215 ----------~~~~~~~~~a~a~G~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~ 265 (380)
.....+.+..++.|...+. ||-.|+.++.+++++|++. .+|.+|.++
T Consensus 495 g~~~~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale~----~gpsViiak 552 (640)
T COG4231 495 GTGVAAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALEV----PGPSVIIAK 552 (640)
T ss_pred CcccccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhcC----CCceEEEEc
Confidence 1234678899999998776 6678999999999998874 789988553
|
|
| >COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00014 Score=74.89 Aligned_cols=108 Identities=22% Similarity=0.203 Sum_probs=75.9
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecc---------ccc--
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPIS---------DQF-- 215 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~---------~~~-- 215 (380)
.++-|+|++.|. .+.+++++||=|+-.-. -+|-+......| +|+|++||+-+|..... +.+
T Consensus 427 ~vSTA~Gi~~a~-----~~ptv~liGDLS~lhD~--NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~fe~~F~t 499 (566)
T COG1165 427 TVSTALGIARAT-----QKPTVALIGDLSFLHDL--NGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPVFERLFGT 499 (566)
T ss_pred hHHHHhhhhhhc-----CCceEEEEechhhhhcc--chHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCcchHHHhcCC
Confidence 477799998874 45699999999983211 123334445557 66677777777653211 111
Q ss_pred -CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 216 -RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 216 -~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
-.-|++..|+.||+...+++ .+.++..++..+.. ..|-.+||++|.|
T Consensus 500 Ph~ldF~~la~~y~l~y~~~~--s~~~l~~~~~~~~~----~~g~~viEvkt~r 547 (566)
T COG1165 500 PHGLDFAHLAATYGLEYHRPQ--SWDELGEALDQAWR----RSGTTVIEVKTDR 547 (566)
T ss_pred CCCCCHHHHHHHhCccccccC--cHHHHHHHHhhhcc----CCCcEEEEEecCh
Confidence 13489999999999999988 78888888887764 3678999999966
|
|
| >cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0017 Score=64.38 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=70.4
Q ss_pred ceeEEEeCcccc-CcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec-------c---------cccCCcCHHHHHhhc
Q 016909 166 ACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-------S---------DQFRSDGAVVKGRAY 227 (380)
Q Consensus 166 ~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~-------~---------~~~~~~~~~~~a~a~ 227 (380)
..|+++.|||.. .-|. ..+.-|..-+.+|.+||-||. |+.++-+ . ......|+...+.++
T Consensus 152 ~~v~v~gGDG~~ydIG~--~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~ 229 (365)
T cd03377 152 KSVWIIGGDGWAYDIGY--GGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSY 229 (365)
T ss_pred cceEEEecchhhhccch--hhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHc
Confidence 589999999965 6664 346667777888888887775 5543211 1 112234788999999
Q ss_pred CeeEE-EEe-CCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016909 228 GVRSI-RVD-GNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 228 G~~~~-~Vd-G~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 269 (380)
|.+.+ ++. |.++.++.+++++|.++ +||.||++.+--.
T Consensus 230 g~~YVA~~s~~~~~~~~~~~i~eA~~~----~Gps~I~v~sPC~ 269 (365)
T cd03377 230 GNVYVAQIALGANDNQTLKAFREAEAY----DGPSLIIAYSPCI 269 (365)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHhcC----CCCEEEEEEccCc
Confidence 98755 454 45999999999999874 8999999987433
|
This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra |
| >cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.016 Score=50.00 Aligned_cols=104 Identities=19% Similarity=0.163 Sum_probs=67.8
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEe-CccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhc
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYF-GDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~-GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~ 227 (380)
..+|.|.+++. . ..+++.. |.|..+ ..+.+..|...++|+|+++...+..... .......+....++.+
T Consensus 48 ~~~A~G~a~~~----~-~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~~~~~~--~~~~q~~~~~~~~~~~ 117 (154)
T cd06586 48 AGAAAGYARAG----G-PPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARGISAQA--KQTFQSMFDLGMYRSI 117 (154)
T ss_pred HHHHHHHHHhh----C-CEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCChhhhc--cCcccccCHHHHHHHh
Confidence 55677777652 3 3333333 888764 4577778888899999999766643211 1111223445666766
Q ss_pred CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
..-.+.+. ++.+..+.+.+|+..+....||++|++
T Consensus 118 ~~~~~~~~--~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 118 PEANISSP--SPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred hheEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 65555554 777888888888877777789999975
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca |
| >cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.015 Score=51.52 Aligned_cols=106 Identities=16% Similarity=0.043 Sum_probs=74.5
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+. +.-.++++..|=|.++ ..-++..|...++|||+|.-+....... .......|..+.++.+--
T Consensus 52 ~mA~gyar~t---g~~~v~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~I~g~~~~~~~~--~~~~q~~d~~~~~~~~tk 123 (164)
T cd07039 52 FAASAEAKLT---GKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQVPTDELG--TDYFQEVDLLALFKDVAV 123 (164)
T ss_pred HHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCcccccC--CCCCcccCHHHHHHHhhc
Confidence 3556666553 3445666667888776 3456777888899999998765543211 111222366778888877
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~ 265 (380)
...+++ ++.++.+++++|+..++...||+.|++-
T Consensus 124 ~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP 157 (164)
T cd07039 124 YNETVT--SPEQLPELLDRAIRTAIAKRGVAVLILP 157 (164)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 778887 8899999999999888888899999873
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ |
| >cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.016 Score=50.35 Aligned_cols=106 Identities=21% Similarity=0.150 Sum_probs=69.5
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
..+|.|.+++. +.-.++++..|=|.++ ...++..|...++|+|+|.-+....-..... ....+..+.++.+-
T Consensus 47 ~~~A~g~~~~~---~~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pll~i~~~~~~~~~~~~~--~q~~d~~~~~~~~~ 118 (155)
T cd07035 47 VGMADGYARAT---GKPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRPTAGEGRGA--FQEIDQVALFRPIT 118 (155)
T ss_pred HHHHHHHHHHH---CCCEEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEeCCCccccccCCc--ccccCHHHHHHHHh
Confidence 45666666653 1222333333666554 5577888888999999998765533222111 11234556666665
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEE
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEA 264 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~ 264 (380)
-...+++ +++++...+.+|+..+... ++|+.|++
T Consensus 119 ~~~~~i~--~~~~~~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 119 KWAYRVT--SPEEIPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred ceEEEcC--CHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 5567776 8999999999999988877 78999986
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio |
| >PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0076 Score=68.17 Aligned_cols=114 Identities=16% Similarity=0.073 Sum_probs=75.3
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccC-cchHHHHHHHHHHcCCCEEEEEEcCCc-ceeeecccccCCc
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGW-AISTPISDQFRSD 218 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~NN~~-~i~~~~~~~~~~~ 218 (380)
++..||+..+.++|.+.+. .++.+|+++|||.|. .|.. +|.-|...+.|++++|-+|.. ++++.+... ...
T Consensus 466 ~~~~MG~~g~~~~G~a~~~----~~~~v~a~iGDgTf~HSG~~--al~~AV~~~~nit~~IL~N~~tAMTGgQp~~-g~i 538 (1159)
T PRK13030 466 GLTQMGGEGVDWIGHAPFT----ETKHVFQNLGDGTYFHSGSL--AIRQAVAAGANITYKILYNDAVAMTGGQPVD-GSI 538 (1159)
T ss_pred eeeccCccchhhceecccc----CCCCEEEEeccchhhhcCHH--HHHHHHhcCCCeEEEEEeCCcccccCCCCCC-CCC
Confidence 4568888888899988763 345799999999984 4433 677778888998887766664 565543321 123
Q ss_pred CHHH---HHhhcCeeEEEEeCCCHHH----------------HHHHHHHHHHHhhccCCcEEEEE
Q 016909 219 GAVV---KGRAYGVRSIRVDGNDALA----------------IYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 219 ~~~~---~a~a~G~~~~~VdG~D~~a----------------v~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
++.+ ..++.|++-+.|--.|+.. ..+++++++ |+.+||++|..
T Consensus 539 ~v~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l---~~~~GvsViI~ 600 (1159)
T PRK13030 539 SVPQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQREL---RETPGVTVLIY 600 (1159)
T ss_pred CHHHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHH---hcCCCcEEEEE
Confidence 4445 7789999877754334433 333444444 34678888854
|
|
| >TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.029 Score=49.53 Aligned_cols=108 Identities=17% Similarity=0.067 Sum_probs=70.2
Q ss_pred cCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHH-HcCCCEEEEEEcCCcceeeecccccCCcCH-HHH
Q 016909 146 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSA-VTEAPVIFICRNNGWAISTPISDQFRSDGA-VVK 223 (380)
Q Consensus 146 G~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~-~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~-~~~ 223 (380)
+.+..+|.|..++ .++.++|+.+=|- |...-+|..|. .+++|||+|+-.-+.--.. .+.+.....+ ...
T Consensus 44 e~aa~~aAg~~~~-----~~~~~v~~~~sG~---gn~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~-~~~q~~~g~~~~~~ 114 (157)
T TIGR03845 44 EEGVGICAGAYLA-----GKKPAILMQSSGL---GNSINALASLNKTYGIPLPILASWRGVYKEK-IPAQIPMGRATPKL 114 (157)
T ss_pred HHHHHHHHHHHHh-----cCCcEEEEeCCcH---HHHHHHHHHHHHcCCCCEEEEEeccCCCCCC-CccccchhhhhHHH
Confidence 4445666666643 3456677777773 34556677788 8899999999544431110 0011111111 223
Q ss_pred HhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016909 224 GRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 224 a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~ 265 (380)
....+++...++ +++++ .++.+|+..+.++++|+.|-+.
T Consensus 115 l~~~~i~~~~i~--~~e~~-~~i~~A~~~a~~~~gPv~il~~ 153 (157)
T TIGR03845 115 LDTLGIPYTIPR--EPEEA-KLIEKAISDAYENSRPVAALLD 153 (157)
T ss_pred HHHcCCCeEEeC--CHHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence 456777888887 79999 9999999999999999998764
|
This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363). |
| >TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.016 Score=66.12 Aligned_cols=98 Identities=15% Similarity=0.205 Sum_probs=70.3
Q ss_pred ceeEEEeCcccc-CcchHHHHHHHHHHcCCCEEEEEEcCC-cceee-------ecc---------cccCCcCHHHHHhhc
Q 016909 166 ACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAIST-------PIS---------DQFRSDGAVVKGRAY 227 (380)
Q Consensus 166 ~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~-------~~~---------~~~~~~~~~~~a~a~ 227 (380)
..|+++.|||.. ..|. ..+.-+..-+.+|.+||-||. |+.++ |.. ......|+...+.++
T Consensus 952 ~sv~~~~GDG~~~diG~--~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGY--GGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccCc--cchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 469999999965 5553 346667778888888887775 54432 111 112345788899999
Q ss_pred CeeEE-EEe-CCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016909 228 GVRSI-RVD-GNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 228 G~~~~-~Vd-G~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 269 (380)
|...+ ++. |.++.++.+++++|..+ +||.+|++.+--.
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~~A~~~----~G~s~i~~~~pC~ 1069 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFREAEAY----DGPSIVIAYSPCI 1069 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHHcC----CCCEEEEEECCCc
Confidence 98655 565 66899999999999874 8999999987543
|
This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase. |
| >cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.021 Score=49.98 Aligned_cols=105 Identities=16% Similarity=0.105 Sum_probs=66.6
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
..+|-|.+++ +. +.+++..|-|..+ ....|-.|...+.|+|+|+-+................+....++. .
T Consensus 54 ~~~A~g~~r~----~~-~v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~-~ 124 (160)
T cd07034 54 AEAAIGASAA----GA-RAMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAARYGGH-P 124 (160)
T ss_pred HHHHHHHHhh----CC-cEEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHHHhCCC-C
Confidence 4455566554 22 2667777888775 456677787888999999876543221110000000112223333 3
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
+...++. +++++.+.+++|+..++.+++|++|..
T Consensus 125 ~~~~~~~--~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 125 WPVLAPS--SVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred EEEEeCC--CHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 6666666 899999999999999999889999864
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th |
| >PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.021 Score=50.79 Aligned_cols=108 Identities=21% Similarity=0.097 Sum_probs=73.1
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
..+|.|.+++. +.-.++++..|=|.++ ..-++..|...++|+|+|+-.-..........+ ...+....++.+.
T Consensus 52 ~~~A~g~ar~~---g~~~v~~~~~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q-~~~d~~~~~~~~~ 124 (172)
T PF02776_consen 52 AFMADGYARAT---GRPGVVIVTSGPGATN---ALTGLANAYADRIPVLVITGQRPSAGEGRGAFQ-QEIDQQSLFRPVT 124 (172)
T ss_dssp HHHHHHHHHHH---SSEEEEEEETTHHHHT---THHHHHHHHHTT-EEEEEEEESSGGGTTTTSTT-SSTHHHHHHGGGS
T ss_pred HHHHHHHHHhh---ccceEEEeecccchHH---HHHHHhhcccceeeEEEEecccchhhhcccccc-cchhhcchhcccc
Confidence 45677777653 3334455555666665 234566678889999999987765443311111 1236677888888
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHh-hccCCcEEEEEE
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMA-IGEGRPILIEAL 265 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~a-r~~~gP~lIe~~ 265 (380)
-...+++ +++++..++++|+..+ ....+|+.|++-
T Consensus 125 k~~~~v~--~~~~~~~~~~~A~~~a~~~~~gPv~l~ip 160 (172)
T PF02776_consen 125 KWSYRVT--SPDDLPEALDRAFRAATSGRPGPVYLEIP 160 (172)
T ss_dssp SEEEEEC--SGGGHHHHHHHHHHHHHHCSTSEEEEEEE
T ss_pred chhcccC--CHHHHHHHHHHHHHHhccCCCccEEEEcC
Confidence 7888887 8888888888888887 677899999985
|
It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B .... |
| >PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.014 Score=65.99 Aligned_cols=119 Identities=13% Similarity=0.049 Sum_probs=79.4
Q ss_pred cccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccC-cchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc--cc
Q 016909 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD--QF 215 (380)
Q Consensus 140 ~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~--~~ 215 (380)
.++..||+..+.++|.+.+ ..++.+|+++|||.|. .|. -+|.-|...+.|++++|-+|. -++++.+.. ..
T Consensus 478 ~~~~~MG~eg~~~~G~a~f----~~~~hv~a~iGDgTffHSG~--~al~~AV~~~~nit~~IL~N~~vAMTGgQ~~~g~~ 551 (1165)
T PRK09193 478 STFTQMGGEGVPWIGQAPF----TDEKHVFQNLGDGTYFHSGL--LAIRAAVAAGVNITYKILYNDAVAMTGGQPVDGGL 551 (1165)
T ss_pred CeeeccCCcchhhceeccc----cCCCcEEEEeccccchhcCH--HHHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCc
Confidence 3467889888899998775 2346799999999984 443 347677788889887665555 566654432 23
Q ss_pred CCcCHHHHHhhcCeeEEEEeCCCHHHHHHH--------------HHHHHHHhhccCCcEEEEE
Q 016909 216 RSDGAVVKGRAYGVRSIRVDGNDALAIYSA--------------VHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 216 ~~~~~~~~a~a~G~~~~~VdG~D~~av~~a--------------~~~A~~~ar~~~gP~lIe~ 264 (380)
+..++.+..++.|++-+.|--.|+...... ++...+..|+.+|+++|..
T Consensus 552 ~~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~lr~~~GvsViI~ 614 (1165)
T PRK09193 552 SVPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQRELREIPGVTVLIY 614 (1165)
T ss_pred chhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 556788999999998776544455544322 3333333335788888854
|
|
| >cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.042 Score=48.56 Aligned_cols=107 Identities=19% Similarity=0.108 Sum_probs=71.1
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecc---ccc---CCcCHHH
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS---DQF---RSDGAVV 222 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~---~~~---~~~~~~~ 222 (380)
.-+|-|.+.+. .-.++++..|=|.++ ..-++..|...+.|||+|+-+.......... ... ..++..+
T Consensus 48 ~~mA~gyar~t----~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~ 120 (162)
T cd07038 48 GYAADGYARVK----GLGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLK 120 (162)
T ss_pred HHHHHHHHHhh----CCEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCCccccccccceeecccccchHHHHH
Confidence 44566666653 133444445777665 3456777888899999999765432111100 001 0124567
Q ss_pred HHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
.++.+.-...+|. +++++.+++++|+..+..++||+.|++
T Consensus 121 ~~~~~tk~~~~v~--~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 121 MFEEITCAAARLT--DPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHHhheeEEEEeC--CHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 7777777778887 888999999999999888889999986
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many |
| >PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.047 Score=61.82 Aligned_cols=118 Identities=14% Similarity=0.027 Sum_probs=74.3
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccC-cchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc--ccC
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD--QFR 216 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~--~~~ 216 (380)
++..||+....++|.+.+. .++.+|+++|||.|. .|. -+|.-|...+.|++++|-+|. -++++.+.. ..+
T Consensus 493 ~~~~MGgeg~~~~G~a~f~----~~~hv~aniGDgTffHSG~--~alr~AV~~~~nit~kIL~N~avAMTGgQp~~G~~~ 566 (1186)
T PRK13029 493 GFSQMGGEGVAWIGQMPFS----RRRHVFQNLGDGTYFHSGL--LAIRQAIAAGVNITYKILYNDAVAMTGGQPVDGVLT 566 (1186)
T ss_pred eeeccCcchhhheeecccC----CCCCEEEEeccccchhcCH--HHHHHHHhcCCCEEEEEEeCcchhccCCCCCCCcCC
Confidence 4567888888888887662 346799999999984 443 347777788889888665555 566654332 223
Q ss_pred CcCHHHHHhhcCeeEEEEeCCCHHHHH--------------HHHHHHHHHhhccCCcEEEEE
Q 016909 217 SDGAVVKGRAYGVRSIRVDGNDALAIY--------------SAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 217 ~~~~~~~a~a~G~~~~~VdG~D~~av~--------------~a~~~A~~~ar~~~gP~lIe~ 264 (380)
.+.++...++.|+.-+.|--.|+..+. +.+....+..|+.+|+++|..
T Consensus 567 v~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~lr~~~GvsViI~ 628 (1186)
T PRK13029 567 VPQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQRELREVPGVSVLIY 628 (1186)
T ss_pred HHHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 334445779999987765322343332 233333333335678888754
|
|
| >cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.084 Score=46.81 Aligned_cols=107 Identities=13% Similarity=0.063 Sum_probs=64.7
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+. +.-.++++..|=|.++ ..-++..|...+.|||+|+-+-....... ..+...|....++.+-
T Consensus 48 ~~mAdgyar~s---g~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~l~~~vt 119 (162)
T cd07037 48 AFFALGLAKAS---GRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTADRPPELRGT--GANQTIDQVGLFGDYV 119 (162)
T ss_pred HHHHHHHHHhh---CCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECCCCHHhcCC--CCCcccchhhhcccee
Confidence 34566666553 3444556666777775 33456778888999999997544332111 1111224445566555
Q ss_pred eeEEEEeCCCHHH------HHHHHHHHHHHhhccC-CcEEEEEE
Q 016909 229 VRSIRVDGNDALA------IYSAVHAAREMAIGEG-RPILIEAL 265 (380)
Q Consensus 229 ~~~~~VdG~D~~a------v~~a~~~A~~~ar~~~-gP~lIe~~ 265 (380)
-...+|. ++++ +.+.+++|+..++.+. ||++|++-
T Consensus 120 k~~~~v~--~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 120 RWSVDLP--PPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred eEEEecC--CcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 4555664 4444 6777777777776654 89999863
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim |
| >PRK08611 pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.26 Score=52.39 Aligned_cols=108 Identities=14% Similarity=0.043 Sum_probs=74.0
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+ .+.-.++++..|=|.++ ..-++..|...++|||+|+-......... ..+...|..+.++.+-
T Consensus 56 ~~mAdgyar~---tg~~gv~~~t~GPG~~N---~l~gla~A~~~~~Pvl~ItG~~~~~~~~~--~~~q~~d~~~l~~~it 127 (576)
T PRK08611 56 ALAAAAYAKL---TGKIGVCLSIGGPGAIH---LLNGLYDAKMDHVPVLALAGQVTSDLLGT--DFFQEVNLEKMFEDVA 127 (576)
T ss_pred HHHHHHHHHH---hCCceEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCcccccCC--CCccccCHHHHhhccc
Confidence 3456666654 34445666667888886 33456778888999999987654432211 1111235667777776
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
--..+|+ +++++..++.+|+..+..+.||+.|++-.
T Consensus 128 k~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP~ 163 (576)
T PRK08611 128 VYNHQIM--SAENLPEIVNQAIRTAYEKKGVAVLTIPD 163 (576)
T ss_pred ceeEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCh
Confidence 5666776 89999999999998888888999998754
|
|
| >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.25 Score=52.11 Aligned_cols=109 Identities=16% Similarity=0.130 Sum_probs=73.3
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+. +.-.++++..|=|.++ ..-++-.|..-++|||+|+-.............+...|....++.+--
T Consensus 54 ~mAdgyar~t---g~~gv~~~t~GPG~~N---~~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk 127 (554)
T TIGR03254 54 YAAAAAGFLT---QKPGVCLTVSAPGFLN---GLTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAK 127 (554)
T ss_pred HHHHHHHHHh---CCCEEEEEccCccHHh---HHHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhhe
Confidence 4566666553 3445677777998886 334577788889999999865543211001111222355677887777
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
...+|+ +++++.+.+.+|+..+..+ .||+.|++-.
T Consensus 128 ~~~~v~--~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~ 163 (554)
T TIGR03254 128 AAYRVL--RAEDIGIGIARAIRTAVSGRPGGVYLDLPA 163 (554)
T ss_pred eEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 788887 8999999999998887775 4899998754
|
In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase. |
| >cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.27 Score=43.06 Aligned_cols=100 Identities=22% Similarity=0.201 Sum_probs=61.2
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHH-HHHHcCCCEEEEEEcCCcce--eeecccccCCcCHHHHH
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN-FSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKG 224 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~-~A~~~~Lpvi~vv~NN~~~i--~~~~~~~~~~~~~~~~a 224 (380)
.+++|.|+|+. | .++++++. ..+.. ..++.+. .++.+++|+++++...+++. .++++.. ..++ ...
T Consensus 51 ~vg~A~GlA~~----G-~~pi~~~~--~~f~~-ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~--~~~~-a~~ 119 (156)
T cd07033 51 MVGIAAGLALH----G-LKPFVSTF--SFFLQ-RAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQG--IEDI-ALL 119 (156)
T ss_pred HHHHHHHHHHC----C-CeEEEEEC--HHHHH-HHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccch--HHHH-HHh
Confidence 35567777753 3 34444444 44432 3445555 88999999999998776654 3333322 1222 223
Q ss_pred hhc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 225 RAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 225 ~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
+.+ |+.++. -.|+.++...+++|++. ++|++|-.
T Consensus 120 ~~iPg~~v~~--Ps~~~~~~~ll~~a~~~----~~P~~irl 154 (156)
T cd07033 120 RAIPNMTVLR--PADANETAAALEAALEY----DGPVYIRL 154 (156)
T ss_pred cCCCCCEEEe--cCCHHHHHHHHHHHHhC----CCCEEEEe
Confidence 333 555554 44999999999999863 57988743
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included |
| >PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.22 Score=50.22 Aligned_cols=117 Identities=19% Similarity=0.207 Sum_probs=76.4
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCH-HHHHhh
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA-VVKGRA 226 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~-~~~a~a 226 (380)
.+.+|+|+++| +.++++.+.=+++. ..+|.+.+|+-.++|+|+++-+.... ++.........|+ ..+..+
T Consensus 60 A~~~a~GAs~a------G~Ra~TaTSg~Gl~--lm~E~~~~a~~~e~P~Viv~~~R~gp-~tg~p~~~~q~D~~~~~~~~ 130 (376)
T PRK08659 60 SMAAVIGASWA------GAKAMTATSGPGFS--LMQENIGYAAMTETPCVIVNVQRGGP-STGQPTKPAQGDMMQARWGT 130 (376)
T ss_pred HHHHHHhHHhh------CCCeEeecCCCcHH--HHHHHHHHHHHcCCCEEEEEeecCCC-CCCCCCCcCcHHHHHHhccc
Confidence 37788898887 34566555444443 46899999999999988888775421 1111111111222 233333
Q ss_pred cC-eeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016909 227 YG-VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 227 ~G-~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
+| .+.+.+...|+.+.+.....|++.+.+.+-|++|-..++ -+|+..
T Consensus 131 hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~~ 178 (376)
T PRK08659 131 HGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEV--VGHMRE 178 (376)
T ss_pred CCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechH--hhCCcc
Confidence 43 333445566999999999999998888889999988883 667653
|
|
| >COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.26 Score=52.10 Aligned_cols=108 Identities=20% Similarity=0.160 Sum_probs=76.7
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+ .|+-.++++..|=|+++ ..-.|-.|..-+.|+|.|.-.-. .+....+.+...|....++.+-
T Consensus 52 a~mAdgyar~---TGkpgV~~~tsGPGatN---~~tgla~A~~d~~Pll~itGqv~--~~~~g~~afQe~D~~~l~~p~t 123 (550)
T COG0028 52 AFAADGYARA---TGKPGVCLVTSGPGATN---LLTGLADAYMDSVPLLAITGQVP--TSLIGTDAFQEVDQVGLFRPIT 123 (550)
T ss_pred HHHHHHHHHH---cCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCcc--ccccCcchhhhcchhhHhhhhh
Confidence 3445565544 46778999999999997 34457778888899999875211 1111112222236777777777
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
-..++|. +++++.+.+++|+..+..++ ||++|++-.
T Consensus 124 k~~~~v~--~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~ 160 (550)
T COG0028 124 KYNFEVR--SPEDIPEVVARAFRIALSGRPGPVVVDLPK 160 (550)
T ss_pred eeEEEeC--CHHHHHHHHHHHHHHHhcCCCceEEEEcCh
Confidence 7778887 99999999999999998877 999998754
|
|
| >PRK07119 2-ketoisovalerate ferredoxin reductase; Validated | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.38 Score=48.01 Aligned_cols=111 Identities=13% Similarity=0.072 Sum_probs=77.5
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHh--
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGR-- 225 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~-- 225 (380)
.+.+|+|+++| +.++++.+-++.+. ..+|.+.+|+-..+|+++++-+-. +-+ ...+ ..+-.++.-
T Consensus 60 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~R~-~p~---~g~t-~~eq~D~~~~~ 126 (352)
T PRK07119 60 AINMVYGAAAT------GKRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIMRG-GPG---LGNI-QPSQGDYFQAV 126 (352)
T ss_pred HHHHHHHHHhh------CCCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEeccC-CCC---CCCC-cchhHHHHHHH
Confidence 37788899887 45688888777775 578999999999999888887754 111 1111 112222221
Q ss_pred ------hcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016909 226 ------AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 226 ------a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
-++|.++ +-.|+.+.++....|++.+.+..-|+++-..++ -+|+..
T Consensus 127 ~~~ghgd~~~~vl--~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~~ 178 (352)
T PRK07119 127 KGGGHGDYRLIVL--APSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV--LGQMME 178 (352)
T ss_pred hcCCCCCcceEEE--eCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchh--hhCcee
Confidence 1235555 455999999999999988888889999988884 366643
|
|
| >TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.15 Score=51.04 Aligned_cols=113 Identities=17% Similarity=0.159 Sum_probs=72.7
Q ss_pred cccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHH-HH--HHHcCCCEEEEEEcCCccee--eecccccCCc
Q 016909 144 TIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAAL-NF--SAVTEAPVIFICRNNGWAIS--TPISDQFRSD 218 (380)
Q Consensus 144 ~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal-~~--A~~~~Lpvi~vv~NN~~~i~--~~~~~~~~~~ 218 (380)
.=|.++++|.|+.+| .+++.++++=-.++. ...-.| .+ ...|++|++++|-.-+.--. .|.+. .-+.
T Consensus 34 ~E~~av~iaaG~~la-----tG~~~~v~mQnSGlG--n~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~-~~G~ 105 (361)
T TIGR03297 34 NEGAAVGLAAGAYLA-----TGKRAAVYMQNSGLG--NAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHV-KQGR 105 (361)
T ss_pred CchHHHHHHHHHHHh-----cCCccEEEEecCchh--hhhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhh-HHhH
Confidence 357778889998887 233445554322231 111222 23 45689999999987775321 12111 1123
Q ss_pred CHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016909 219 GAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 219 ~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~ 265 (380)
-..+..+++|++...++ .+.++...++..|++++.+.++|+.|-+.
T Consensus 106 ~t~~lL~~~~i~~~~~~-~~~~~~~~~~~~a~~~~~~~~~p~a~l~~ 151 (361)
T TIGR03297 106 ITLSLLDALEIPWEVLS-TDNDEALAQIERALAHALATSRPYALVVR 151 (361)
T ss_pred HHHHHHHHcCCCEEECC-CChHHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 34578899999999994 35667888888888888888999888664
|
This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A |
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.33 Score=51.69 Aligned_cols=107 Identities=16% Similarity=0.108 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.++++..|=|.++ ..-++-.|...++|||+|+-.-..... ....+...+....++.+--
T Consensus 57 ~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gi~~A~~~~~Pvl~I~g~~~~~~~--~~~~~q~~d~~~l~~~~tk 128 (588)
T PRK07525 57 HMADGYTRVT---GRMGMVIGQNGPGITN---FVTAVATAYWAHTPVVLVTPQAGTKTI--GQGGFQEAEQMPMFEDMTK 128 (588)
T ss_pred HHHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCcccC--CCCCCcccchhhhhhhhee
Confidence 4566666553 3445667777888886 335566778889999999832211100 0011111245566776655
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
...++. +++.+...+.+|+..++.+.||+.|++-.
T Consensus 129 ~~~~i~--~~~~~~~~i~rA~~~A~~~~GPV~i~iP~ 163 (588)
T PRK07525 129 YQEEVR--DPSRMAEVLNRVFDKAKRESGPAQINIPR 163 (588)
T ss_pred EEEECC--CHHHHHHHHHHHHHHHhcCCCCEEEEcCh
Confidence 566666 89999999999999888889999998864
|
|
| >PRK07524 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.42 Score=50.17 Aligned_cols=110 Identities=17% Similarity=0.037 Sum_probs=74.4
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecc-cccCCcCHHHHHhhc
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS-DQFRSDGAVVKGRAY 227 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~-~~~~~~~~~~~a~a~ 227 (380)
.-+|-|.|.. .+.-.++++..|=|.++ ..-++.-|...++|||+|+-........... ......|....++.+
T Consensus 52 ~~mAdgyar~---tg~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~ 125 (535)
T PRK07524 52 GFMADGYARV---SGKPGVCFIITGPGMTN---IATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGV 125 (535)
T ss_pred HHHHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhh
Confidence 4456666554 23445677777888886 3456777888899999998644322111100 001123567788888
Q ss_pred CeeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 228 GVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
--...+|. +++++.+.+.+|+..++.+ .||+.|++-.
T Consensus 126 tk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (535)
T PRK07524 126 AAFSHTLM--SAEDLPEVLARAFAVFDSARPRPVHIEIPL 163 (535)
T ss_pred ceeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEEeCH
Confidence 77777887 8999999999999888876 5999998764
|
|
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.47 Score=50.31 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.+.+. +.-.++++..|=|.++ ..-++..|...++|||+|+-.-...........+...|....++.+--
T Consensus 61 ~mAdgyar~t---g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~tk 134 (569)
T PRK09259 61 NAAAAAGFLT---QKPGVCLTVSAPGFLN---GLTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPFCK 134 (569)
T ss_pred HHHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEEccCCcccccccCCCccccchhhhhhhhee
Confidence 3455555542 3445666667888886 334577788889999999865432210000111122355567777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
...+|+ +++++...+.+|+..+..+ .||+.|++-.
T Consensus 135 ~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 170 (569)
T PRK09259 135 AAFRVN--RAEDIGIGVARAIRTAVSGRPGGVYLDLPA 170 (569)
T ss_pred eeEEcC--CHHHHHHHHHHHHHHhhhCCCCcEEEEeCH
Confidence 677777 8999999999999888775 5899998863
|
|
| >PRK06457 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.46 Score=50.13 Aligned_cols=107 Identities=16% Similarity=0.025 Sum_probs=70.8
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+ .+.-.++++..|=|.++ ..-++-.|..-+.|||+|+-.-...... ...+...|..+.++.+--
T Consensus 53 ~mAdgyar~---tgkpgv~~~t~GPG~~N---~l~~l~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~vtk 124 (549)
T PRK06457 53 LAASVEAKI---TGKPSACMGTSGPGSIH---LLNGLYDAKMDHAPVIALTGQVESDMIG--HDYFQEVNLTKLFDDVAV 124 (549)
T ss_pred HHHHHHHHH---hCCCeEEEeCCCCchhh---hHHHHHHHHhcCCCEEEEecCCCccccC--CCcccccchhhhhcccee
Confidence 356666654 34455666777888886 3456777888899999998653322111 111112245566666555
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
...+|. ++.++..++++|+..+....||+.|++-.
T Consensus 125 ~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP~ 159 (549)
T PRK06457 125 FNQILI--NPENAEYIIRRAIREAISKRGVAHINLPV 159 (549)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCH
Confidence 556666 88899999999998888888999998864
|
|
| >PRK07064 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.53 Score=49.49 Aligned_cols=109 Identities=17% Similarity=0.106 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccc-cCCcCHHHHHhhcC
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ-FRSDGAVVKGRAYG 228 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~-~~~~~~~~~a~a~G 228 (380)
-+|.|.|.+. +.-.++++..|=|.++ ..-++-.|..-+.|||+|+-+-.-......... ....|..+.++.+-
T Consensus 55 ~~A~gyar~t---g~~~v~~~t~GpG~~N---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~t 128 (544)
T PRK07064 55 NMADAHARVS---GGLGVALTSTGTGAGN---AAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVS 128 (544)
T ss_pred HHHHHHHHhc---CCCeEEEeCCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhc
Confidence 4566666553 3445667777888886 345677788889999999864221110000000 11235667777766
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
-...+|+ +++++..++.+|+..+..+ .||+.|++-.
T Consensus 129 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 165 (544)
T PRK07064 129 KAAFRVR--SAETALATIREAVRVALTAPTGPVSVEIPI 165 (544)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHhccCCCCcEEEEeCH
Confidence 5677776 8888999999998887776 7999998864
|
|
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.42 Score=50.74 Aligned_cols=107 Identities=15% Similarity=0.084 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+ .+.-.++++..|=|.++ ..-++..|...+.|||+|.-.-.... .....+...|....++.+--
T Consensus 53 ~~Adgyar~---tg~~gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~I~g~~~~~~--~~~~~~Q~~d~~~l~~~vtk 124 (579)
T TIGR03457 53 HMADGFARV---TGRMSMVIGQNGPGVTN---CVTAIAAAYWAHTPVVIVTPEAGTKT--IGLGGFQEADQLPMFQEFTK 124 (579)
T ss_pred HHHHHHHHH---hCCCEEEEECCCchHHH---HHHHHHHHhhcCCCEEEEeCCCcccc--CCCCCCcccchhhhhhccee
Confidence 355566554 34445666777888886 33457778888999999973221110 00111111255566776666
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
...+|. +++++...+++|+..+..++||+.|++-.
T Consensus 125 ~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 159 (579)
T TIGR03457 125 YQGHVR--HPSRMAEVLNRCFERAWREMGPAQLNIPR 159 (579)
T ss_pred EEEecC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 666676 89999999999998888888999998854
|
Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur. |
| >PRK06112 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.5 Score=50.17 Aligned_cols=107 Identities=18% Similarity=0.102 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.++++..|=|.++ ..-++.-|...++|||+|+-.-...... .......|....++.+--
T Consensus 63 ~~Adgyar~t---g~~gv~~~t~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~Q~~d~~~l~~~vtk 134 (578)
T PRK06112 63 AMADGYARVS---GKVAVVTAQNGPAATL---LVAPLAEALKASVPIVALVQDVNRDQTD--RNAFQELDHIALFQSCTK 134 (578)
T ss_pred HHHHHHHHHh---CCCEEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccCC--CCCccccChhhhhccccc
Confidence 3566666543 4455666677888875 3455667888899999998543221111 111112355667777776
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
...+|+ +++++...+.+|+..++.+ .||+.|++-.
T Consensus 135 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~ 170 (578)
T PRK06112 135 WVRRVT--VAERIDDYVDQAFTAATSGRPGPVVLLLPA 170 (578)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEcCH
Confidence 677777 8899999999999888876 4899998864
|
|
| >PRK07979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.46 Score=50.42 Aligned_cols=108 Identities=17% Similarity=0.143 Sum_probs=73.8
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+ .+.-.++++..|=|.++ ..-++..|...++|||+|+-.-...... ...+-..|....++.+--
T Consensus 56 ~mAdgYar~---tg~~gv~~~t~GPG~~n---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~~tk 127 (574)
T PRK07979 56 HMADGLARA---TGEVGVVLVTSGPGATN---AITGIATAYMDSIPLVVLSGQVATSLIG--YDAFQECDMVGISRPVVK 127 (574)
T ss_pred HHHHHHHHH---hCCceEEEECCCccHhh---hHHHHHHHhhcCCCEEEEECCCChhccC--CCCCceecHHHHhhcccc
Confidence 356666654 34456777778988886 3345667788899999998654332211 111222356667777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t~ 267 (380)
...+|. +++++...+++|+..++.+. ||+.|++-..
T Consensus 128 ~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~D 164 (574)
T PRK07979 128 HSFLVK--QTEDIPQVLKKAFWLAASGRPGPVVVDLPKD 164 (574)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 677776 89999999999998888875 9999988653
|
|
| >PRK06456 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.5 Score=50.07 Aligned_cols=108 Identities=19% Similarity=0.086 Sum_probs=71.4
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|... +.-.++++..|=|.++ ..-++..|...++|||+|.-.-....... ..+...|....++.+-
T Consensus 56 ~~~Adgyar~t---g~~gv~~~t~GpG~~N---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~i~~~~t 127 (572)
T PRK06456 56 AHAADGYARAS---GVPGVCTATSGPGTTN---LVTGLITAYWDSSPVIAITGQVPRSVMGK--MAFQEADAMGVFENVT 127 (572)
T ss_pred HHHHHHHHHhh---CCCEEEEeCCCCCHHH---HHHHHHHHHhhCCCEEEEecCCCccccCC--CCccccchhhhhhccc
Confidence 34566666542 3344555567888886 33556778888999999985443221111 1111124566777776
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++...+.+|+..++.+. ||+.|++-.
T Consensus 128 k~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 164 (572)
T PRK06456 128 KYVIGIK--RIDEIPQWIKNAFYIATTGRPGPVVIDIPR 164 (572)
T ss_pred eeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecCh
Confidence 6677776 89999999999998888765 999998854
|
|
| >PRK08266 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.56 Score=49.31 Aligned_cols=110 Identities=16% Similarity=0.099 Sum_probs=71.9
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccc-CCcCHHHHHhhcC
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQF-RSDGAVVKGRAYG 228 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~-~~~~~~~~a~a~G 228 (380)
-+|.|.|.+. +.-.++++..|=|.++ ..-++--|..-++|||+|+-.-..........++ ...|....++.+-
T Consensus 57 ~~A~gyar~t---g~~~v~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~t 130 (542)
T PRK08266 57 YMAFGYARST---GRPGVCSVVPGPGVLN---AGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLATLRSFT 130 (542)
T ss_pred HHHHHHHHHh---CCCeEEEECCCCcHHH---HHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecccHhhHHhhhc
Confidence 3666766553 3334566667888886 3455777888899999998532211100000011 1135667777776
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 267 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t~ 267 (380)
-...+|+ +++++...+++|+..++.+ .||+.|++-..
T Consensus 131 k~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 131 KWAERIE--HPSEAPALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 6677787 8889999999999887774 58999988753
|
|
| >PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.55 Score=47.57 Aligned_cols=113 Identities=21% Similarity=0.265 Sum_probs=75.9
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhc
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~ 227 (380)
.+.+|+|+++| +.++++.+-=++++ ..+|.|.+|+-.++|+|+++.|-.-. ++........|+. .++--
T Consensus 61 A~~~aiGAs~a------GaRa~TaTSg~Gl~--lm~E~l~~aa~~~lPiVi~~~~R~~p--~~~~~~~~q~D~~-~~~d~ 129 (390)
T PRK08366 61 AMAACIGASAA------GARAFTATSAQGLA--LMHEMLHWAAGARLPIVMVDVNRAMA--PPWSVWDDQTDSL-AQRDT 129 (390)
T ss_pred HHHHHHHHHhh------CCCeEeeeCcccHH--HHhhHHHHHHhcCCCEEEEEeccCCC--CCCCCcchhhHHH-HHhhc
Confidence 37788899887 34566665555554 47899999999999988887654432 2222111112222 12333
Q ss_pred CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 016909 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 274 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~ 274 (380)
||-++. ..|+.+.+.....|++.+.+..-|+++-..+|+.. |..
T Consensus 130 g~i~~~--~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~s-h~~ 173 (390)
T PRK08366 130 GWMQFY--AENNQEVYDGVLMAFKVAETVNLPAMVVESAFILS-HTY 173 (390)
T ss_pred CEEEEe--CCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccc-ccc
Confidence 664443 46999999999999988888899999999888865 443
|
|
| >PRK06276 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.59 Score=49.73 Aligned_cols=108 Identities=20% Similarity=0.139 Sum_probs=71.9
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
..+|.|.|.+. +.-.++++..|=|.++ ..-++--|...++|||+|+-.-..... .......-|....++.+-
T Consensus 51 ~~~Adgyar~t---g~~gv~~~t~GPG~~n---~l~~i~~A~~~~~Pvl~I~G~~~~~~~--~~~~~q~~d~~~l~~~~t 122 (586)
T PRK06276 51 AHAADGYARAS---GKVGVCVATSGPGATN---LVTGIATAYADSSPVIALTGQVPTKLI--GNDAFQEIDALGIFMPIT 122 (586)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCCcccc--CCCCCccccHhhHHhhhc
Confidence 44566666543 3445666677888886 345566788889999999843322111 111111225566777776
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
-...+|+ +++++...+.+|+..+..+ .||+.|++-.
T Consensus 123 k~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (586)
T PRK06276 123 KHNFQIK--KPEEIPEIFRAAFEIAKTGRPGPVHIDLPK 159 (586)
T ss_pred ceEEecC--CHHHHHHHHHHHHHHhcCCCCCcEEEEcCh
Confidence 6677776 8899999999999888776 4899998864
|
|
| >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.63 Score=49.85 Aligned_cols=108 Identities=19% Similarity=0.153 Sum_probs=71.6
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.. .+.-.++++..|=|.++ ..-+|-.|..-+.|||+|.-.-..... ....+...|....++.+-
T Consensus 73 a~aA~gyar~---tgk~gv~~~t~GPG~~n---~l~gl~~A~~d~~Pvl~i~G~~~~~~~--~~~~~Qe~d~~~~~~~vt 144 (616)
T PRK07418 73 AHAADGYARA---TGKVGVCFGTSGPGATN---LVTGIATAQMDSVPMVVITGQVPRPAI--GTDAFQETDIFGITLPIV 144 (616)
T ss_pred HHHHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCcccc--CCCCcccccHHHHhhhcc
Confidence 3455566544 34455666677888886 335577788889999999864322110 111111235566677665
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++..++.+|+..+..++ ||+.|++-.
T Consensus 145 k~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~ 181 (616)
T PRK07418 145 KHSYVVR--DPSDMARIVAEAFHIASSGRPGPVLIDIPK 181 (616)
T ss_pred eeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecch
Confidence 5566777 89999999999998888776 999998754
|
|
| >PRK08322 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.61 Score=49.10 Aligned_cols=108 Identities=15% Similarity=0.117 Sum_probs=71.4
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++--|..-++|||+|+-.-...... ...+...|....++.+-
T Consensus 51 ~~~A~gyar~t---g~~gv~~~t~GpG~~N---~~~~i~~A~~~~~Pll~i~g~~~~~~~~--~~~~q~~d~~~~~~~~t 122 (547)
T PRK08322 51 AFMAATYGRLT---GKAGVCLSTLGPGATN---LVTGVAYAQLGGMPMVAITGQKPIKRSK--QGSFQIVDVVAMMAPLT 122 (547)
T ss_pred HHHHHHHHHhh---CCCEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEeccccccccC--CCccccccHHHHhhhhe
Confidence 34566666542 3445666666888886 3355667778899999998543322111 11122235666777665
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
-...+|. +++++.+.+.+|+..+..+ .||+.|++-.
T Consensus 123 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (547)
T PRK08322 123 KWTRQIV--SPDNIPEVVREAFRLAEEERPGAVHLELPE 159 (547)
T ss_pred eEEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcCh
Confidence 5566776 8999999999999888876 4899998864
|
|
| >PRK11269 glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.63 Score=49.59 Aligned_cols=108 Identities=15% Similarity=0.149 Sum_probs=71.7
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+.. ++-.++++..|=|.++ ..-++..|..-++|||+|.-.-....... ..+...|....++.+--
T Consensus 56 ~mAdGYar~t~--g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~~~l~~~itk 128 (591)
T PRK11269 56 HMAEGYTRATA--GNIGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLHK--EDFQAVDIESIAKPVTK 128 (591)
T ss_pred HHHHHHHHHcC--CCcEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CcccccChhhHhhccee
Confidence 45666665421 3345566677888886 23456677788999999986544322111 11112355667776655
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
...+|. +++++..++++|+..++.+. ||+.|++-.
T Consensus 129 ~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 164 (591)
T PRK11269 129 WAVTVR--EPALVPRVFQQAFHLMRSGRPGPVLIDLPF 164 (591)
T ss_pred EEEEcC--CHHHHHHHHHHHHHHHhhCCCCeEEEEeCh
Confidence 666675 89999999999998888764 899998864
|
|
| >PRK08273 thiamine pyrophosphate protein; Provisional | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.49 Score=50.52 Aligned_cols=108 Identities=14% Similarity=-0.012 Sum_probs=70.1
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC-
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG- 228 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G- 228 (380)
-+|-|.|.+. +.-.++++..|=|+++ ..-++.-|..-++|||+|+-.=..... ....+...|..+.++.+-
T Consensus 56 ~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gi~~A~~d~vPvl~I~G~~~~~~~--~~~~~q~~d~~~l~~~vt~ 127 (597)
T PRK08273 56 FMAVAHAKFT---GEVGVCLATSGPGAIH---LLNGLYDAKLDHVPVVAIVGQQARAAL--GGHYQQEVDLQSLFKDVAG 127 (597)
T ss_pred HHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCchhhc--CCCCCCccCHHHHHHHHHH
Confidence 3566666543 3345666667888886 334566777889999999853221111 111111234556666655
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
-...+|+ +++.+...+.+|+..+..+.||+.|++-..
T Consensus 128 k~~~~v~--~~~~~~~~l~~A~~~A~~~~gPV~i~iP~D 164 (597)
T PRK08273 128 AFVQMVT--VPEQLRHLVDRAVRTALAERTVTAVILPND 164 (597)
T ss_pred HHeeEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCcc
Confidence 4566676 888999999999988888889999987644
|
|
| >PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.16 Score=47.66 Aligned_cols=112 Identities=19% Similarity=0.212 Sum_probs=67.3
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccee-eecccccCCcCHHHHHhhc
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS-TPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~-~~~~~~~~~~~~~~~a~a~ 227 (380)
+.+++|++++ +.++++.+-=.+++ ...|.|.+++-.++|+|+++-|-.-.-. .++.. ...|+ -.++-+
T Consensus 49 ~~~~~GAs~a------G~ra~t~ts~~Gl~--lm~e~l~~a~~~~~P~V~~~~~R~g~~~g~~~~~--~q~D~-~~~~d~ 117 (230)
T PF01855_consen 49 MEAAIGASAA------GARAMTATSGPGLN--LMAEPLYWAAGTELPIVIVVVQRAGPSPGLSTQP--EQDDL-MAARDS 117 (230)
T ss_dssp HHHHHHHHHT------T--EEEEEECCHHH--HHCCCHHHHHHTT--EEEEEEEB---SSSB--SB---SHHH-HHTTTS
T ss_pred HHHHHHHHhc------CCceEEeecCCccc--ccHhHHHHHHHcCCCEEEEEEECCCCCCCCcCcC--ChhHH-HHHHhc
Confidence 6678888876 23444444333332 3567789999999998888877543222 11111 11111 223467
Q ss_pred CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 016909 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 274 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~ 274 (380)
||.++... |+.+.++....|.+.+.+..-|+++-..+++. .|+.
T Consensus 118 ~~~vl~p~--~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~-sh~~ 161 (230)
T PF01855_consen 118 GWIVLAPS--SPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC-SHSR 161 (230)
T ss_dssp S-EEEE----SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC-TC-E
T ss_pred CeEEEeCC--CHHHHHHHHHHHHHHHHHHCCCEEEEechhhh-cCcc
Confidence 88877665 99999999999999888899999999888775 3554
|
This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B .... |
| >PRK06725 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.54 Score=49.90 Aligned_cols=108 Identities=20% Similarity=0.195 Sum_probs=73.3
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.. .+.-.++++..|=|.++ ..-++.-|...+.|||+|+-........ .......|....++.+-
T Consensus 65 ~~mAdgyar~---tg~~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~it 136 (570)
T PRK06725 65 IHAAEGYARA---SGKVGVVFATSGPGATN---LVTGLADAYMDSIPLVVITGQVATPLIG--KDGFQEADVVGITVPVT 136 (570)
T ss_pred HHHHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHhhcCcCEEEEecCCCccccc--CCCCcccchhhhhhccc
Confidence 3456666654 24445667777888886 3345666777899999998543322111 11122235667788777
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
-...+|. +++.+.+.+++|+..++.+. ||+.|++-.
T Consensus 137 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 173 (570)
T PRK06725 137 KHNYQVR--DVNQLSRIVQEAFYIAESGRPGPVLIDIPK 173 (570)
T ss_pred eeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEcccc
Confidence 6677786 89999999999998888875 999998754
|
|
| >PRK06466 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.57 Score=49.73 Aligned_cols=108 Identities=19% Similarity=0.172 Sum_probs=73.3
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+ .+.-.++++..|=|.++ ..-++..|..-++|||+|.-......... ..+-..|....++.+--
T Consensus 56 ~mAdgyar~---tg~~gv~~vt~GPG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~itk 127 (574)
T PRK06466 56 HMADGYARA---TGKTGVVLVTSGPGATN---AITGIATAYMDSIPMVVLSGQVPSTLIGE--DAFQETDMVGISRPIVK 127 (574)
T ss_pred HHHHHHHHH---hCCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCccccCC--Ccccccchhhhhhccce
Confidence 356666654 24445677777888886 34557778888999999986544322111 11112355667777666
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 267 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t~ 267 (380)
...+|+ ++.++...+++|+..++.+ .||+.|++-..
T Consensus 128 ~s~~v~--~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 128 HSFMVK--HASEIPEIIKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred eEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 677777 8999999999999888877 49999988654
|
|
| >PRK07586 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.56 Score=48.99 Aligned_cols=109 Identities=18% Similarity=0.088 Sum_probs=71.4
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+ .+.-.++++..|=|.++ ..-++-.|..-+.|||+|+-.-...... ....-..|....++.+-
T Consensus 52 ~~mAdgyar~---tg~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~vt 123 (514)
T PRK07586 52 TGAADGYARM---AGKPAATLLHLGPGLAN---GLANLHNARRARTPIVNIVGDHATYHRK--YDAPLTSDIEALARPVS 123 (514)
T ss_pred HHHHHHHHHH---HCCCEEEEecccHHHHH---HHHHHHHHHhcCCCEEEEecCCchhccC--CCcccccchhhhhcccc
Confidence 3456666654 23445666777888775 2334556778899999998653322111 11111235666777766
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 267 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t~ 267 (380)
-...+|. +++++.+.+++|+..++.+ .||+.|++-..
T Consensus 124 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~D 161 (514)
T PRK07586 124 GWVRRSE--SAADVAADAAAAVAAARGAPGQVATLILPAD 161 (514)
T ss_pred ceeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence 5666776 8999999999999888887 69999988653
|
|
| >PRK07789 acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.64 Score=49.75 Aligned_cols=108 Identities=20% Similarity=0.206 Sum_probs=71.6
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+ .+.-.++++..|=|.++ ..-++.-|..-++|||+|+-.-...... ...+...|....++.+-
T Consensus 82 ~~~Adgyar~---tg~~gv~~~t~GPG~~N---~l~gl~~A~~~~~PllvI~G~~~~~~~~--~~~~q~~d~~~l~~~~t 153 (612)
T PRK07789 82 GHAAEGYAQA---TGRVGVCMATSGPGATN---LVTPIADANMDSVPVVAITGQVGRGLIG--TDAFQEADIVGITMPIT 153 (612)
T ss_pred HHHHHHHHHH---hCCCEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCcCcccchhhhhhcce
Confidence 3455566554 24445666777888886 3345666778889999998543322111 11122235666777766
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
-...+|+ +++++...+.+|+..++.+ .||+.|++-.
T Consensus 154 k~s~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~ 190 (612)
T PRK07789 154 KHNFLVT--DADDIPRVIAEAFHIASTGRPGPVLVDIPK 190 (612)
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEEcc
Confidence 6666776 8999999999999888876 4999998864
|
|
| >PLN02470 acetolactate synthase | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.62 Score=49.58 Aligned_cols=108 Identities=20% Similarity=0.177 Sum_probs=72.8
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-..... ....+...|....++.+-
T Consensus 64 ~~~Adgyar~t---g~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~I~G~~~~~~~--~~~~~q~~d~~~l~~~~t 135 (585)
T PLN02470 64 VFAAEGYAKAS---GKVGVCIATSGPGATN---LVTGLADALLDSVPLVAITGQVPRRMI--GTDAFQETPIVEVTRSIT 135 (585)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCcEEEEecCCChhhc--CCCcCcccchhhhhhhhe
Confidence 34566766653 3445677777888886 334566677889999999754332111 111112234556777776
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++.+++.+|+..++.++ ||+.|++-.
T Consensus 136 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 172 (585)
T PLN02470 136 KHNYLVM--DVEDIPRVIREAFFLASSGRPGPVLVDIPK 172 (585)
T ss_pred EEEEEcC--CHHHHHHHHHHHHHHhcCCCCCeEEEEecC
Confidence 6677776 89999999999998888875 999999864
|
|
| >TIGR01504 glyox_carbo_lig glyoxylate carboligase | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.62 Score=49.67 Aligned_cols=109 Identities=16% Similarity=0.164 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+.. +.-.++++..|=|.++ ..-++.-|...++|||+|+-.-....... ..+...|....++.+--
T Consensus 55 ~mAdgyaR~t~--g~~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~D~~~~~~~vtk 127 (588)
T TIGR01504 55 HMAEGYTRATA--GNIGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLHK--EDFQAVDIAAIAKPVSK 127 (588)
T ss_pred HHHHHHHHhcC--CCeEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CcccccCHHHHhhhhce
Confidence 34555555420 2334555556888775 33456677788999999985444322111 11222356677887776
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t~ 267 (380)
...+|. +++++.+.+++|+..++.++ ||+.|++-..
T Consensus 128 ~~~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 164 (588)
T TIGR01504 128 MAVTVR--EAALVPRVLQQAFHLMRSGRPGPVLIDLPFD 164 (588)
T ss_pred EEEEcC--CHHHHHHHHHHHHHHHccCCCCeEEEEeCcc
Confidence 777776 89999999999998887764 8999988653
|
Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. |
| >PRK07710 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.62 Score=49.43 Aligned_cols=108 Identities=17% Similarity=0.185 Sum_probs=70.6
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++--|..-++|||+|.-......... ......|....++.+-
T Consensus 66 ~~~A~gyar~t---g~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~--~~~q~~d~~~l~~~~t 137 (571)
T PRK07710 66 IHAAEGYARIS---GKPGVVIATSGPGATN---VVTGLADAMIDSLPLVVFTGQVATSVIGS--DAFQEADIMGITMPVT 137 (571)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeccCCccccCC--CCccccchhhhhhccc
Confidence 44566666553 3345666667888876 33456677788999999986544321111 1111224556666655
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
-...+|. +++++...+++|+..++.+ .||+.|++-.
T Consensus 138 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 174 (571)
T PRK07710 138 KHNYQVR--KASDLPRIIKEAFHIATTGRPGPVLIDIPK 174 (571)
T ss_pred ceEEecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCh
Confidence 5566665 8889999999999888877 4999998864
|
|
| >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.56 Score=49.44 Aligned_cols=108 Identities=20% Similarity=0.191 Sum_probs=70.7
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++--|..-++|||+|.-.-....... ......|....++.+-
T Consensus 51 ~~~Adgyar~s---g~~gv~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~t 122 (548)
T PRK08978 51 AMAAIGYARAT---GKVGVCIATSGPGATN---LITGLADALLDSVPVVAITGQVSSPLIGT--DAFQEIDVLGLSLACT 122 (548)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CCCcccchhccccCce
Confidence 34566666553 4455667777888886 34557778888999999985433211111 1111124445566665
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
-...+|+ +++++...+++|+..++.+ .||+.|++-.
T Consensus 123 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (548)
T PRK08978 123 KHSFLVQ--SLEELPEIMAEAFEIASSGRPGPVLVDIPK 159 (548)
T ss_pred eeEEEEC--CHHHHHHHHHHHHHHHhcCCCCcEEEecCh
Confidence 5566776 8999999999999888876 4999998764
|
|
| >TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.68 Score=48.90 Aligned_cols=107 Identities=19% Similarity=0.184 Sum_probs=71.8
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|... +.-.++++..|=|.++ ..-++.-|..-++|||+|+-.-...... .......|....++.+--
T Consensus 53 ~~Adgyar~t---g~~gv~~~t~GpG~~n---~l~~i~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~~~~~~tk 124 (558)
T TIGR00118 53 HAADGYARAS---GKVGVVLVTSGPGATN---LVTGIATAYMDSIPMVVFTGQVPTSLIG--SDAFQEADILGITMPITK 124 (558)
T ss_pred HHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCCccccC--CCCCcccChhhhhcCccc
Confidence 4466666543 4445677777888886 3456777888899999998643221111 111112245567777776
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
...+|+ +++++...+.+|+..+..++ ||+.|++-.
T Consensus 125 ~~~~v~--~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~ 160 (558)
T TIGR00118 125 HSFQVK--SAEDIPRIIKEAFHIATTGRPGPVLVDLPK 160 (558)
T ss_pred eeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEcCh
Confidence 777786 88999999999998887774 899998864
|
Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed. |
| >PRK12474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.83 Score=47.84 Aligned_cols=108 Identities=18% Similarity=0.022 Sum_probs=70.0
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+ .+.-.++++..|=|.++ ..-++-.|..-+.|||+|+-........ ...+-..|....++.+--
T Consensus 57 ~mAdgYaR~---tg~~gv~~~t~GpG~~N---~~~gl~~A~~d~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~vtk 128 (518)
T PRK12474 57 GAADGYGRI---AGKPAVTLLHLGPGLAN---GLANLHNARRAASPIVNIVGDHAVEHLQ--YDAPLTSDIDGFARPVSR 128 (518)
T ss_pred HHHHHHHHH---hCCCEEEEEccchhHhH---hHHHHHHHhhcCCCEEEEeccCchhhcC--CCCccccCHHHhhhcccc
Confidence 355566654 34455677777888775 2334556777889999998643321111 111111356667776655
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t~ 267 (380)
...+|+ +++++..++++|+..+..+. ||++|++-..
T Consensus 129 ~~~~v~--~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~D 165 (518)
T PRK12474 129 WVHRSA--SAGAVDSDVARAVQAAQSAPGGIATLIMPAD 165 (518)
T ss_pred eeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 555665 89999999999998777765 8999988643
|
|
| >PRK09107 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.74 Score=49.14 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=71.6
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.. .+.-.++++..|=|.++ ..-++..|...+.|||+|.-.-....... ..+...|....++.+-
T Consensus 62 ~~mAdgyar~---tg~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~vt 133 (595)
T PRK09107 62 GHAAEGYARS---TGKPGVVLVTSGPGATN---AVTPLQDALMDSIPLVCITGQVPTHLIGS--DAFQECDTVGITRPCT 133 (595)
T ss_pred HHHHHHHHHH---hCCCEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEEcCCChhhcCC--CCCcccchhhhhhhhe
Confidence 3445666554 24445667777888886 33456677788999999986544322111 1111224556666665
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++...+.+|+..++.+. ||+.|++-.
T Consensus 134 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 170 (595)
T PRK09107 134 KHNWLVK--DVNDLARVIHEAFHVATSGRPGPVVVDIPK 170 (595)
T ss_pred EEEEEeC--CHHHHHHHHHHHHHHhcCCCCceEEEecCC
Confidence 5666776 89999999999999888874 899998754
|
|
| >cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.72 Score=41.06 Aligned_cols=99 Identities=14% Similarity=0.057 Sum_probs=59.2
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHH-HHHHHc--------CCCEEEEEEcCCcceeeecccccCCc
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAAL-NFSAVT--------EAPVIFICRNNGWAISTPISDQFRSD 218 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal-~~A~~~--------~Lpvi~vv~NN~~~i~~~~~~~~~~~ 218 (380)
.++.|.|+|+. +.++|+.+.=+.|.. -.+|-+ +-++.+ ++||++++..-+++..++++ +..
T Consensus 56 ~vg~AaGlA~~------G~~pi~~~~~a~Fl~-ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~th---s~~ 125 (167)
T cd07036 56 IVGLAVGAAMN------GLRPIVEIMFADFAL-PAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQH---SQS 125 (167)
T ss_pred HHHHHHHHHHc------CCEEEEEeehHHHHH-HHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChhh---hhh
Confidence 35666777664 235555433344433 233433 444443 58999999776665444432 223
Q ss_pred CHHHHHhhc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 219 GAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 219 ~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
++ ...+++ |+.++.-. |+.+....++.+++. ++|+++-
T Consensus 126 ~~-a~lr~iPg~~V~~Ps--d~~e~~~~l~~~~~~----~~P~~~~ 164 (167)
T cd07036 126 LE-AWFAHIPGLKVVAPS--TPYDAKGLLKAAIRD----DDPVIFL 164 (167)
T ss_pred HH-HHHhcCCCCEEEeeC--CHHHHHHHHHHHHhC----CCcEEEE
Confidence 33 445555 67666654 999999999998864 6899873
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain |
| >TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.76 Score=48.41 Aligned_cols=109 Identities=18% Similarity=0.123 Sum_probs=68.1
Q ss_pred HHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeec---ccccC-CcCHHHHHhh
Q 016909 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SDQFR-SDGAVVKGRA 226 (380)
Q Consensus 151 ~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~---~~~~~-~~~~~~~a~a 226 (380)
+|-|.|.+ .+.-.++++..|=|.++ ..-++..|...++|||+|.-.......... +.+.. .++..+.++.
T Consensus 53 ~Adgyar~---tg~~gv~~~t~GpG~~n---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (535)
T TIGR03394 53 AADAAARY---RGTLGVAAVTYGAGAFN---MVNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKE 126 (535)
T ss_pred HHhHHHHh---hCCceEEEEecchHHHh---hhhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhh
Confidence 45566654 34455677777999886 234577778889999999865432211100 01110 1123455666
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
+--...+|. +++.+.+++++|+..+....||+.|++-..
T Consensus 127 vtk~~~~v~--~~~~~~~~~~~A~~~a~~~~gPv~i~iP~D 165 (535)
T TIGR03394 127 VTCDQAVLD--DPATAPAEIARVLGSARELSRPVYLEIPRD 165 (535)
T ss_pred heEEEEEeC--ChHHhHHHHHHHHHHHHHCCCCEEEEechh
Confidence 544455665 777777888888877777789999988654
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase. |
| >PRK08155 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.86 Score=48.23 Aligned_cols=108 Identities=18% Similarity=0.145 Sum_probs=69.5
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++.-|...++|||+|.-.-...... ......-|....++.+-
T Consensus 64 ~~~Adgyar~t---g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~~t 135 (564)
T PRK08155 64 GFIAQGMARTT---GKPAVCMACSGPGATN---LVTAIADARLDSIPLVCITGQVPASMIG--TDAFQEVDTYGISIPIT 135 (564)
T ss_pred HHHHHHHHHHc---CCCeEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeccCCccccc--CCCccccchhhhhhccc
Confidence 34566776653 3334555566888876 2345667888899999998543322111 11111124445566655
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
-...+|+ +++++...+.+|+..++.+ .||+.|++-.
T Consensus 136 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~ 172 (564)
T PRK08155 136 KHNYLVR--DIEELPQVISDAFRIAQSGRPGPVWIDIPK 172 (564)
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 5566666 8999999999999888877 4999999854
|
|
| >PRK06965 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.99 Score=48.07 Aligned_cols=108 Identities=20% Similarity=0.133 Sum_probs=70.0
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+. +.-.++++..|=|.++ ..-++..|...++|||+|.-.-..... ........|....++.+--
T Consensus 73 ~~AdgYar~t---g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~l~~~itk 144 (587)
T PRK06965 73 HAADGYARAT---GKVGVALVTSGPGVTN---AVTGIATAYMDSIPMVVISGQVPTAAI--GQDAFQECDTVGITRPIVK 144 (587)
T ss_pred HHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCcccc--CCCCcccccHHHHhcCCcc
Confidence 3566666553 3445666666888776 234566677788999999743221110 0111112355566777666
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 267 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t~ 267 (380)
...+|. +++++.+.+.+|+..++.+ .||+.|++-..
T Consensus 145 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 181 (587)
T PRK06965 145 HNFLVK--DVRDLAETVKKAFYIARTGRPGPVVVDIPKD 181 (587)
T ss_pred eeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 677777 8999999999999888887 49999987553
|
|
| >PRK08979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.87 Score=48.31 Aligned_cols=108 Identities=19% Similarity=0.171 Sum_probs=71.3
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+. +.-.++++..|=|.++ ..-++--|...++|||+|.-.-...... ...+...|....++.+-
T Consensus 55 ~~mAdgyar~t---g~~gv~~~t~GpG~~n---~l~gia~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~it 126 (572)
T PRK08979 55 VHMADGYARAT---GKVGVVLVTSGPGATN---TITGIATAYMDSIPMVVLSGQVPSNLIG--NDAFQECDMIGISRPVV 126 (572)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCchHhH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCCcccchhHHhhhce
Confidence 44566666553 4445666666888876 2345666778889999998543322111 11122235566777766
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++...+++|+..++.+. ||+.|++-.
T Consensus 127 k~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (572)
T PRK08979 127 KHSFLVK--DAEDIPEIIKKAFYIASTGRPGPVVIDLPK 163 (572)
T ss_pred eEEEecC--CHHHHHHHHHHHHHHHhCCCCCcEEEecCH
Confidence 6677777 89999999999998888765 899998754
|
|
| >PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2 | Back alignment and domain information |
|---|
Probab=92.69 E-value=1.4 Score=39.35 Aligned_cols=108 Identities=17% Similarity=0.095 Sum_probs=62.2
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccC-cchHHHHHH-HHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHh
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALN-FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGR 225 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~-eG~~~Eal~-~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~ 225 (380)
.+++|+|+|++-+ ...+++..+++=... +-..++.+. ..+..++|+. |+..-+++.........+..+ ....+
T Consensus 60 ~vg~a~GlA~~G~---~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~d-~~~~~ 134 (178)
T PF02779_consen 60 MVGMAAGLALAGG---LRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIED-EAILR 134 (178)
T ss_dssp HHHHHHHHHHHSS---SEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSSH-HHHHH
T ss_pred ccceeeeeeeccc---ccceeEeeccccccccchhhhhhhhhhhhcccceec-ceeecCccccccccccccccc-ccccc
Confidence 4677888887621 123444445433220 123455555 6778899988 665555533322222233333 34444
Q ss_pred hc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 226 AY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 226 a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
++ |+.++.-. |+.++...++.++++ +.++|++|-.
T Consensus 135 ~iPg~~v~~Ps--d~~e~~~~l~~a~~~--~~~~P~~ir~ 170 (178)
T PF02779_consen 135 SIPGMKVVVPS--DPAEAKGLLRAAIRR--ESDGPVYIRE 170 (178)
T ss_dssp TSTTEEEEE-S--SHHHHHHHHHHHHHS--SSSSEEEEEE
T ss_pred cccccccccCC--CHHHHHHHHHHHHHh--CCCCeEEEEe
Confidence 44 88777655 999999999999873 2479998854
|
2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B .... |
| >TIGR02720 pyruv_oxi_spxB pyruvate oxidase | Back alignment and domain information |
|---|
Probab=92.69 E-value=1.1 Score=47.61 Aligned_cols=107 Identities=14% Similarity=0.010 Sum_probs=68.8
Q ss_pred HHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCee
Q 016909 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (380)
Q Consensus 151 ~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~ 230 (380)
+|-|.|.+ .++-.++++..|=|.++ ..-++..|...++|||+|+-.-..... ........+....++.+--.
T Consensus 53 ~Adgyar~---tgk~gv~~~t~GPG~~n---~~~~i~~A~~~~~Pvl~I~G~~~~~~~--~~~~~q~id~~~~~~~vtk~ 124 (575)
T TIGR02720 53 AAAADAKL---TGKIGVCFGSAGPGATH---LLNGLYDAKEDHVPVLALVGQVPTTGM--NMDTFQEMNENPIYADVAVY 124 (575)
T ss_pred HHHHHHHh---hCCceEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccC--CCCCcceechhhhhhhcceE
Confidence 45555543 34456777777888886 335566778889999999865432211 11111112444556666555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 231 SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 231 ~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
..+|. +++.+...+.+|+..+....||+.|++-..
T Consensus 125 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 159 (575)
T TIGR02720 125 NRTAM--TAESLPHVIDEAIRRAYAHNGVAVVTIPVD 159 (575)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEECcc
Confidence 55665 788888888888887778889999988644
|
Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name. |
| >PRK08199 thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
Probab=92.62 E-value=1 Score=47.67 Aligned_cols=108 Identities=14% Similarity=0.092 Sum_probs=69.3
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+ .+.-.++++..|=|.++ ..-++..|...++|||+|.-.-...... ......-|....++.+=
T Consensus 59 ~~~Adgyar~---tg~~gv~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~l~~~~t 130 (557)
T PRK08199 59 AMMAEAYGKL---TGRPGICFVTRGPGATN---ASIGVHTAFQDSTPMILFVGQVARDFRE--REAFQEIDYRRMFGPMA 130 (557)
T ss_pred HHHHHHHHHh---cCCCEEEEeCCCccHHH---HHHHHHHHhhcCCCEEEEecCCccccCC--CCcccccCHHHhhhhhh
Confidence 3456666654 33445666677888886 3455667778899999998543221111 11111124555666554
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
-...+|. +++++...+.+|+..+..+ .||+.|++-.
T Consensus 131 k~~~~v~--~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~ 167 (557)
T PRK08199 131 KWVAEID--DAARIPELVSRAFHVATSGRPGPVVLALPE 167 (557)
T ss_pred ceeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 4455664 8999999999999888777 4899998763
|
|
| >PRK06882 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.94 Score=48.01 Aligned_cols=108 Identities=19% Similarity=0.188 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+. +.-.++++..|=|.++ ..-++-.|...++|||+|.-.-...... .......|....++.+--
T Consensus 56 ~mAdgyar~t---g~~gv~~~t~GpG~~N---~l~~i~~A~~~~~Pvlvi~G~~~~~~~~--~~~~q~~d~~~l~~~vtk 127 (574)
T PRK06882 56 HMADGYARST---GKVGCVLVTSGPGATN---AITGIATAYTDSVPLVILSGQVPSNLIG--TDAFQECDMLGISRPVVK 127 (574)
T ss_pred HHHHHHHHhh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCcccccchhhhhhcccc
Confidence 4556665542 3445666667888876 2345667788899999998544322111 111112355667776665
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 267 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t~ 267 (380)
...+|. +++++...+.+|+..++.+ .||+.|++-..
T Consensus 128 ~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06882 128 HSFIVK--NAEDIPSTIKKAFYIASTGRPGPVVIDIPKD 164 (574)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHhcCCCCCEEEecCHH
Confidence 667776 8899999999999877775 59999988653
|
|
| >TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.79 Score=49.23 Aligned_cols=103 Identities=10% Similarity=0.068 Sum_probs=61.8
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce-eeecccccCCcCHHHHHhh
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i-~~~~~~~~~~~~~~~~a~a 226 (380)
.++.|.|+|++ +.++|+.+ =+.|.+=.+-+-.+.++..++||++++...++.. +++++.+ ..+++-...-
T Consensus 364 ~vg~AaGlA~~------G~~Pvv~~-~a~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~--~~dia~lr~i 434 (617)
T TIGR00204 364 AVTFAAGMAIE------GYKPFVAI-YSTFLQRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQG--AFDISYLRCI 434 (617)
T ss_pred HHHHHHHHHHC------CCEEEEEe-cHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCccccc--chHHHHHhcC
Confidence 34567776653 23444444 4556543333344678889999999998777642 2333322 2344322222
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
-|+.++.-- |+.++...++.|++. .++|++|-.
T Consensus 435 Pgl~V~~Ps--d~~e~~~~l~~a~~~---~~~Pv~ir~ 467 (617)
T TIGR00204 435 PNMVIMAPS--DENELRQMLYTGYHY---DDGPIAVRY 467 (617)
T ss_pred CCcEEEeeC--CHHHHHHHHHHHHhC---CCCCEEEEE
Confidence 366666544 899999999998863 358998843
|
DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP). |
| >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=92.38 E-value=1 Score=47.61 Aligned_cols=108 Identities=19% Similarity=0.169 Sum_probs=69.6
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++--|..-+.|||+|.-.-..... ........|....++.+-
T Consensus 58 ~~~Adgyar~t---g~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~~~~~it 129 (561)
T PRK06048 58 AHAADGYARAT---GKVGVCVATSGPGATN---LVTGIATAYMDSVPIVALTGQVPRSMI--GNDAFQEADITGITMPIT 129 (561)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEeccCCcccc--CCCCccccchhhhccCcc
Confidence 44566666553 4445667777888886 335566777889999999743222111 111111224555666665
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
-...+|. ++.++..++.+|+..++.+ .||+.|++-.
T Consensus 130 k~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 166 (561)
T PRK06048 130 KHNYLVQ--DAKDLPRIIKEAFHIASTGRPGPVLIDLPK 166 (561)
T ss_pred eEEEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEecCh
Confidence 5566676 8899999999999888776 4899998854
|
|
| >PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.71 Score=46.53 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=74.0
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecccccCCcCH-HHHHhh
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQFRSDGA-VVKGRA 226 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~~~~~~~~-~~~a~a 226 (380)
+.+|+|+++| +.++++.+.=+++. ..+|.+.+|+-..+|+|+++.+-. -+...++... ..|+ ..+..+
T Consensus 60 ~~~a~GAs~a------G~Ra~taTSg~G~~--lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~~--q~D~~~~~~~~ 129 (375)
T PRK09627 60 ISVALGASMS------GVKSMTASSGPGIS--LKAEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRVA--QGDVNQAKNPT 129 (375)
T ss_pred HHHHHHHHhh------CCCEEeecCCchHH--HHhhHHHHHHhccCCEEEEEeccCCCcCCCCCccc--hHHHHHHhcCC
Confidence 6778888887 33455555444443 467999999999999988776643 1111121111 1122 223333
Q ss_pred cC-eeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016909 227 YG-VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 227 ~G-~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
+| .+.+.+.-.|+.+++....+|++.+.+..-|++|-..+ +. +|+..
T Consensus 130 hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~-~l-sh~~~ 177 (375)
T PRK09627 130 HGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE-TV-GHMYG 177 (375)
T ss_pred CCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecch-HH-hCCee
Confidence 32 22334566699999999999999888889999998887 44 67643
|
|
| >PRK07282 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=92.11 E-value=1 Score=47.69 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=70.7
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|.-.....-.. ...+-..+....++.+-
T Consensus 61 ~~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~it 132 (566)
T PRK07282 61 LHEAEGYAKST---GKLGVAVVTSGPGATN---AITGIADAMSDSVPLLVFTGQVARAGIG--KDAFQEADIVGITMPIT 132 (566)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecccccccCC--CCCccccChhchhcCCC
Confidence 44566666542 4445677777888886 3345666777899999998653321111 11111124455666665
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++..++.+|+..++.++ ||+.|++-.
T Consensus 133 k~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 169 (566)
T PRK07282 133 KYNYQIR--ETADIPRIITEAVHIATTGRPGPVVIDLPK 169 (566)
T ss_pred ceeEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEeCCh
Confidence 5666776 88899999999998888774 999998755
|
|
| >PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=92.07 E-value=1.1 Score=45.56 Aligned_cols=113 Identities=19% Similarity=0.204 Sum_probs=74.2
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhc
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~ 227 (380)
.+.+++|+++| +.++++.+-=.++. ..+|.|.+|+-.++|+|+++-|-..+. +..-.....|+ .-.+-.
T Consensus 62 A~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aag~~lP~V~vv~~R~~~~--p~~i~~d~~D~-~~~rd~ 130 (394)
T PRK08367 62 AISACVGASAA------GVRTFTATASQGLA--LMHEVLFIAAGMRLPIVMAIGNRALSA--PINIWNDWQDT-ISQRDT 130 (394)
T ss_pred HHHHHHHHHhh------CCCeEeeeccchHH--HHhhHHHHHHHccCCEEEEECCCCCCC--CCCcCcchHHH-Hhcccc
Confidence 37778888887 33455554333333 468999999999999999886554432 22211111121 123446
Q ss_pred CeeEEEEeCCCHHHHHHHHHHHHHHhhccC--CcEEEEEEeecCCCCCC
Q 016909 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEG--RPILIEALTYRVGHHTT 274 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~A~~~ar~~~--gP~lIe~~t~R~~gHs~ 274 (380)
||-.+.. .|+.+.++-...|.+.+.+.+ -|+++-..+||.. |+.
T Consensus 131 g~~~~~a--~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~s-H~~ 176 (394)
T PRK08367 131 GWMQFYA--ENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILT-HTV 176 (394)
T ss_pred CeEEEeC--CCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhc-Ccc
Confidence 7666554 699999999999998877433 6999999998864 543
|
|
| >PRK05858 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.01 E-value=1.3 Score=46.66 Aligned_cols=108 Identities=17% Similarity=-0.000 Sum_probs=69.7
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+ .+.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-..........+ ..|....++.+-
T Consensus 55 ~~~AdGyar~---tg~~gv~~~t~GpG~~n---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q--~~d~~~l~~~~t 126 (542)
T PRK05858 55 AFAAEAWAKL---TRVPGVAVLTAGPGVTN---GMSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQ--EIDHVPFVAPVT 126 (542)
T ss_pred HHHHHHHHHh---cCCCeEEEEcCCchHHH---HHHHHHHHHhcCCCEEEEeCCCCcccCCCCCCc--ccchhhhhhhhh
Confidence 3456666655 23344556666777775 335577788889999998854332211111111 124556677776
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
-...+|+ +++.+.+.+.+|+..+..+ .||+.|++-.
T Consensus 127 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 163 (542)
T PRK05858 127 KFAATAQ--SAENAGRLVDQALQAAVTPHRGPVFVDFPM 163 (542)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHcCCCCCeEEEEcCh
Confidence 6677776 7888999999998877665 5899998854
|
|
| >PRK08327 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.86 Score=48.33 Aligned_cols=109 Identities=15% Similarity=0.133 Sum_probs=70.9
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeec----c--cccCC-cCHHH
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI----S--DQFRS-DGAVV 222 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~----~--~~~~~-~~~~~ 222 (380)
-+|-|.|.. .++-.++++..|=|.++ ..-++..|..-+.|||+|+-.-........ . ..+.. .|...
T Consensus 64 ~~Adgyar~---tgk~gv~~~t~GPG~~N---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~ 137 (569)
T PRK08327 64 SMAHGYALV---TGKPQAVMVHVDVGTAN---ALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGG 137 (569)
T ss_pred HHHHHHHHh---hCCCeEEEEecCHHHHH---HHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHH
Confidence 345566554 23445666677888886 345677788889999999875432221100 0 00111 25556
Q ss_pred HHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
.++.+--...+|+ +++++..++.+|+..++.+ .||+.|++-.
T Consensus 138 ~~~~vtk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~ 180 (569)
T PRK08327 138 LVREYVKWDYEIR--RGDQIGEVVARAIQIAMSEPKGPVYLTLPR 180 (569)
T ss_pred HHhhhhhhhcccC--CHHHHHHHHHHHHHHHhcCCCCCEEEECcH
Confidence 6666655566676 8999999999999888875 6999998863
|
|
| >TIGR02418 acolac_catab acetolactate synthase, catabolic | Back alignment and domain information |
|---|
Probab=91.89 E-value=1.4 Score=46.31 Aligned_cols=107 Identities=19% Similarity=0.055 Sum_probs=68.6
Q ss_pred HHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCee
Q 016909 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (380)
Q Consensus 151 ~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~ 230 (380)
+|-|.|.. .+.-.++++..|=|.++ ..-++-.|...+.|||+|+-.-...... ...+...+....++.+--.
T Consensus 51 ~Adgyar~---tg~~gv~~~t~GpG~~n---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~~~~~~tk~ 122 (539)
T TIGR02418 51 MAQAVGRI---TGKPGVALVTSGPGCSN---LVTGLATANSEGDPVVAIGGQVKRADLL--KLTHQSMDNVALFRPITKY 122 (539)
T ss_pred HHHHHHHH---hCCceEEEECCCCCHhH---HHHHHHHHhhcCCCEEEEeCCCcccccc--cCcccccchhhhhhcceee
Confidence 45555543 34445677777888886 3345666788899999998643322111 1111123445666665444
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 016909 231 SIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 267 (380)
Q Consensus 231 ~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t~ 267 (380)
..+++ +++++...+.+|+..++.+ .||+.|++-..
T Consensus 123 ~~~i~--~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~d 158 (539)
T TIGR02418 123 SAEVQ--DPDALSEVVANAFRAAESGKPGAAFVSLPQD 158 (539)
T ss_pred eeecC--CHHHHHHHHHHHHHHHhcCCCCCEEEEcChh
Confidence 55665 8999999999998887776 48999987643
|
Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family. |
| >PRK08527 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=91.81 E-value=1.4 Score=46.62 Aligned_cols=108 Identities=20% Similarity=0.145 Sum_probs=68.9
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.. .+.-.++++..|=|.++ ..-++.-|...+.|||+|.-.-..... ........|....++.+-
T Consensus 54 ~~~Adgyar~---tg~~gv~~~t~GpG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~~~~~~t 125 (563)
T PRK08527 54 VHAADGYARA---SGKVGVAIVTSGPGFTN---AVTGLATAYMDSIPLVLISGQVPNSLI--GTDAFQEIDAVGISRPCV 125 (563)
T ss_pred HHHHHHHHhh---hCCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCcccc--CCCCCcccchhhhhhccc
Confidence 3445555544 34455667777888886 234566677889999999743221110 011111124445666665
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++..++++|+..++.+. ||+.|++-.
T Consensus 126 k~s~~v~--~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~ 162 (563)
T PRK08527 126 KHNYLVK--SIEELPRILKEAFYIARSGRPGPVHIDIPK 162 (563)
T ss_pred ceEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 5556665 99999999999998888765 899998764
|
|
| >TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.74 Score=48.89 Aligned_cols=109 Identities=19% Similarity=0.219 Sum_probs=71.4
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCH-HHHHhh-
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA-VVKGRA- 226 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~-~~~a~a- 226 (380)
+.+|+|+++| +.++++.+-=.+++ ...|.|.+|+-..+|+|+++-+..- .++....+....|+ ..+.-+
T Consensus 250 ~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~~~P~Vi~~~~R~g-pstg~~t~~eq~D~~~~~~~~h 320 (562)
T TIGR03710 250 INMAIGASYA------GARAMTATSGPGFA--LMTEALGLAGMTETPLVIVDVQRGG-PSTGLPTKTEQSDLLFALYGGH 320 (562)
T ss_pred HHHHHhHHhc------CCceeecCCCCChh--HhHHHHhHHHhccCCEEEEEcccCC-CCCCCCCCccHHHHHHHhcCCC
Confidence 6778888887 33455555444454 5789999999999998887766542 22211111111122 122222
Q ss_pred --cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 227 --YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 227 --~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
++|.++ ...|+.+++....+|++.+.+..-|+++-...+.
T Consensus 321 gd~~~ivl--~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l 362 (562)
T TIGR03710 321 GEFPRIVL--APGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYL 362 (562)
T ss_pred CCcCceEE--cCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHH
Confidence 235444 4559999999999999988888999999988874
|
The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions. |
| >PRK08617 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=91.57 E-value=1.5 Score=46.20 Aligned_cols=107 Identities=16% Similarity=0.048 Sum_probs=69.1
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+ .+.-.++++..|=|.++ ..-++..|..-+.|||+|.-......... ......|....++.+--
T Consensus 56 ~~A~gyar~---tg~~gv~~vt~GpG~~N---~l~gl~~A~~~~~PvlvisG~~~~~~~~~--~~~q~~d~~~l~~~~tk 127 (552)
T PRK08617 56 FMAAAIGRL---TGKPGVVLVTSGPGVSN---LATGLVTATAEGDPVVAIGGQVKRADRLK--RTHQSMDNVALFRPITK 127 (552)
T ss_pred HHHHhHhhh---cCCCEEEEECCCCcHhH---hHHHHHHHhhcCCCEEEEecCCcccccCC--CCccccchhhhhhhhcc
Confidence 345555543 33445666666888886 33456677888899999985332211111 11112245566777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
...+|+ +++++..++.+|+..+..+ .||+.|++-.
T Consensus 128 ~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 163 (552)
T PRK08617 128 YSAEVQ--DPDNLSEVLANAFRAAESGRPGAAFVSLPQ 163 (552)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEeChh
Confidence 677776 8999999999999888776 4899998764
|
|
| >PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=91.51 E-value=1.3 Score=45.07 Aligned_cols=111 Identities=19% Similarity=0.196 Sum_probs=73.8
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
+.+++|++++ +.++++.+-=.+++ ..+|.|.+|+-.++|+|+++-+-+... +..-.....|+.. ++.-|
T Consensus 69 ~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aa~~~~P~V~~~~~R~~~~--~~~i~~d~~D~~~-~r~~g 137 (407)
T PRK09622 69 MSACVGAAAA------GGRVATATSSQGLA--LMVEVLYQASGMRLPIVLNLVNRALAA--PLNVNGDHSDMYL-SRDSG 137 (407)
T ss_pred HHHHHHHHhh------CcCEEeecCcchHH--HHhhHHHHHHHhhCCEEEEEeccccCC--CcCCCchHHHHHH-HhcCC
Confidence 6778888887 33455554433343 478999999999999888888777532 1111111122222 23446
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc--CCcEEEEEEeecCCCCC
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE--GRPILIEALTYRVGHHT 273 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~--~gP~lIe~~t~R~~gHs 273 (380)
|.++ ...++.++++....|.+.+.+. .-|+++-..+++. +|.
T Consensus 138 ~ivl--~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~-sh~ 181 (407)
T PRK09622 138 WISL--CTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLC-SHT 181 (407)
T ss_pred eEEE--eCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhh-hCc
Confidence 6555 4559999999999999887766 7899998887653 453
|
|
| >CHL00099 ilvB acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
Probab=91.24 E-value=1.6 Score=46.41 Aligned_cols=107 Identities=22% Similarity=0.192 Sum_probs=68.2
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.. .+.-.++++..|=|.++ ..-++.-|..-+.|||+|+-.-...... ...+..-|....++.+--
T Consensus 65 ~~Adgyar~---tg~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~~~~~~tk 136 (585)
T CHL00099 65 HAADGYARS---TGKVGVCFATSGPGATN---LVTGIATAQMDSVPLLVITGQVGRAFIG--TDAFQEVDIFGITLPIVK 136 (585)
T ss_pred HHHHHHHHh---cCCcEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCccccchhhhhcCcee
Confidence 345555544 24445666777888886 2345666778889999998542211100 011111244556666655
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
...+|. +++++.+.+++|+..++.+ .||+.|++-.
T Consensus 137 ~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~ 172 (585)
T CHL00099 137 HSYVVR--DARDISRIVAEAFYIAKHGRPGPVLIDIPK 172 (585)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHccCCCCeEEEecCh
Confidence 666776 8999999999999887765 4899998754
|
|
| >KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.16 E-value=1.2 Score=45.28 Aligned_cols=149 Identities=17% Similarity=0.210 Sum_probs=82.8
Q ss_pred CCCHHHHHHHhhcCCC-----CCCCCCCCccccCC---CCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCcc
Q 016909 104 GFSMQEFANQCFGNKA-----DYGKGRQMPIHYGS---NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDG 175 (380)
Q Consensus 104 G~~~~~~l~e~~g~~~-----~~~~G~~~~~H~~~---~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG 175 (380)
|..-.++|.+++.+.. |+-.|.-++.|-.. .+.++.-.----|+ .-+|-|.|.+. ++..+|++..|-|
T Consensus 90 g~tGg~If~emm~rqnV~tVFgYPGGAilpv~dAi~rS~~f~fvLPrHEQga-ghaAegYaR~s---gKPGvvlvTSGPG 165 (675)
T KOG4166|consen 90 GRTGGDIFVEMMERQNVETVFGYPGGAILPVHDAITRSSSFRFVLPRHEQGA-GHAAEGYARSS---GKPGVVLVTSGPG 165 (675)
T ss_pred CCchhHHHHHHHHhcCCceEeecCCcceeehHhhhhcCcccccccccccccc-chhhhhhhhhc---CCCcEEEEecCCC
Confidence 3334456666655433 34456667776332 22222211111122 23456776664 5678999999999
Q ss_pred ccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhc-CeeEEEEeCCCHHHHHHHHHHHHHHhh
Q 016909 176 GTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAI 254 (380)
Q Consensus 176 ~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar 254 (380)
+++ +.--|.-|-.-+.|+|.+- .|..-+.-..+.+...++....+++ -|.+. | .|++++..-+.+|++.+-
T Consensus 166 ATN---vvtp~ADAlaDg~PlVvft--GQVptsaIGtDAFQEadiVgisRScTKwNvm-V--kdVedlPrrI~EAFeiAT 237 (675)
T KOG4166|consen 166 ATN---VVTPLADALADGVPLVVFT--GQVPTSAIGTDAFQEADIVGISRSCTKWNVM-V--KDVEDLPRRIEEAFEIAT 237 (675)
T ss_pred ccc---ccchhhHHhhcCCcEEEEe--cccchhhcccchhccCCeeeeeeccceehee-e--ecHHHhhHHHHHHhhhhc
Confidence 997 3334555666788977653 3322111112222223344444444 23333 3 389999999999998776
Q ss_pred cc-CCcEEEEE
Q 016909 255 GE-GRPILIEA 264 (380)
Q Consensus 255 ~~-~gP~lIe~ 264 (380)
.+ .||+|+++
T Consensus 238 SGRPGPVLVDl 248 (675)
T KOG4166|consen 238 SGRPGPVLVDL 248 (675)
T ss_pred cCCCCCeEeeC
Confidence 65 58999976
|
|
| >PLN02683 pyruvate dehydrogenase E1 component subunit beta | Back alignment and domain information |
|---|
Probab=90.75 E-value=2.2 Score=42.72 Aligned_cols=101 Identities=19% Similarity=0.121 Sum_probs=59.4
Q ss_pred CccHHHHHHHHHhhhcCCCceeEEEe-CccccCcchHHHHHHHHHHcC--------CCEEEEEEcCCcceeeecccccCC
Q 016909 147 TQLPHAVGAAYALKMDRKDACAVTYF-GDGGTSEGDFHAALNFSAVTE--------APVIFICRNNGWAISTPISDQFRS 217 (380)
Q Consensus 147 ~~~p~AvG~A~A~k~~~~~~~vv~~~-GDG~~~eG~~~Eal~~A~~~~--------Lpvi~vv~NN~~~i~~~~~~~~~~ 217 (380)
+.++.|+|+|++ | .++++++. .|=. +=.+-+-.+-++.++ +||+|+..+......++++.+.
T Consensus 85 ~~vg~AaGlA~~----G-~~P~v~~~~~~f~--~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g~G~tH~~~-- 155 (356)
T PLN02683 85 GFTGIGVGAAYA----G-LKPVVEFMTFNFS--MQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQC-- 155 (356)
T ss_pred HHHHHHHHHHHC----C-CEEEEEEehhhHH--HHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCCCCCccccC--
Confidence 346667777764 2 23444443 2222 112333456667665 9999998773322223333221
Q ss_pred cCHHHHHhhc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 218 DGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 218 ~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
. ....+++ |+.++.-- |..++..+++.|++ .++|+.|-.
T Consensus 156 -~-~a~lr~iPnl~V~~Pa--d~~e~~~~l~~a~~----~~gPv~ir~ 195 (356)
T PLN02683 156 -F-AAWYSSVPGLKVLAPY--SSEDARGLLKAAIR----DPDPVVFLE 195 (356)
T ss_pred -H-HHHHhcCCCCEEEEeC--CHHHHHHHHHHHHh----CCCcEEEEE
Confidence 2 3555554 77777655 89999999998885 368998853
|
|
| >PRK09124 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.60 E-value=2.1 Score=45.45 Aligned_cols=106 Identities=14% Similarity=-0.024 Sum_probs=64.0
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.++++..|=|.++ ..-++--|..-++|||+|.-+-....... ..+...+..+.++.+-.
T Consensus 55 ~~Adgyar~t---g~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~Q~~d~~~l~~~itk 126 (574)
T PRK09124 55 FAAGAEAQLT---GELAVCAGSCGPGNLH---LINGLFDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHPQELFRECSH 126 (574)
T ss_pred HHHHHHHHhh---CCcEEEEECCCCCHHH---HHHHHHHHhhcCCCEEEEecCCccccCCC--CCccccChhhhccccee
Confidence 3566665542 3223334445777775 22346667788899999986533221111 11111244456665544
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~ 265 (380)
...+|+ +++.+...+.+|+..+....||+.|++-
T Consensus 127 ~~~~v~--~~~~~~~~i~~A~~~A~~~~gPV~l~iP 160 (574)
T PRK09124 127 YCELVS--NPEQLPRVLAIAMRKAILNRGVAVVVLP 160 (574)
T ss_pred eeEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 555666 8888888888888887777899999874
|
|
| >PLN02573 pyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=90.39 E-value=2.1 Score=45.64 Aligned_cols=109 Identities=17% Similarity=0.094 Sum_probs=68.8
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeee---cccccCCc---CHHHH
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP---ISDQFRSD---GAVVK 223 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~---~~~~~~~~---~~~~~ 223 (380)
-+|-|.|.+. + -.++++..|=|.++ ..-++..|...+.|||+|.-.-....... .+...... ...+.
T Consensus 68 ~mAdgyaR~t---g-~gv~~~t~GpG~~n---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (578)
T PLN02573 68 YAADGYARAR---G-VGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRC 140 (578)
T ss_pred HHHHHHHHHh---C-CCeEEEecCccHHH---HHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHH
Confidence 3555666543 4 56777888888886 23456667788999999986543321110 00000001 11245
Q ss_pred HhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 224 GRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 224 a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
++.+--...+|. +++.+.+.+.+|+..++.+.||+.|++-..
T Consensus 141 ~~~itk~s~~v~--~~~~~~~~l~~A~~~A~~~~gPV~l~iP~D 182 (578)
T PLN02573 141 FQTVTCYQAVIN--NLEDAHELIDTAISTALKESKPVYISVSCN 182 (578)
T ss_pred hhceEEEEEEeC--CHHHHHHHHHHHHHHHHhcCCCEEEEeehh
Confidence 555555566676 888888889999888888889999988543
|
|
| >PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.36 E-value=1.6 Score=47.23 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=62.2
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHH-HHHHHcCCCEEEEEEcCCcc-eeeecccccCCcCHHHHHhh
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAAL-NFSAVTEAPVIFICRNNGWA-ISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal-~~A~~~~Lpvi~vv~NN~~~-i~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|++ .-+++++++ ..|.+ ..++.+ +.++..++||+|+++..++. .+++++.. ..+++-...-
T Consensus 374 vg~AaGlA~~-----G~~P~v~~f--~~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~--~~dia~lr~i 443 (641)
T PRK12571 374 VTFAAGLAAA-----GLKPFCAVY--STFLQ-RGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHAG--AFDLAFLTNL 443 (641)
T ss_pred HHHHHHHHHC-----CCEEEEEeh--HHHHH-HHHHHHHHHHhhcCCCeEEEEECCCcCCCCCccccc--cHHHHHHhcC
Confidence 4566677652 224444444 34544 344555 66889999999999777653 22333332 2333333322
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~ 265 (380)
-|+.++.-- |+.+++.+++.|++. .++|++|-..
T Consensus 444 Pnl~V~~Ps--d~~e~~~~l~~a~~~---~~~P~~ir~~ 477 (641)
T PRK12571 444 PNMTVMAPR--DEAELRHMLRTAAAH---DDGPIAVRFP 477 (641)
T ss_pred CCCEEEeeC--CHHHHHHHHHHHHhC---CCCcEEEEEe
Confidence 366666544 899999999998863 4799988543
|
|
| >TIGR00232 tktlase_bact transketolase, bacterial and yeast | Back alignment and domain information |
|---|
Probab=90.30 E-value=1.7 Score=47.06 Aligned_cols=101 Identities=17% Similarity=0.076 Sum_probs=63.2
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce--eeecccccCCcCHHHHHhh
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i--~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. +.-.++++.+ ..|.+ ..++++.+++..++||++|....+++. +++++ .+.++++- .++
T Consensus 409 v~~AaGlA~~----gG~~p~~~tf--~~F~~-r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~TH--q~iedia~-lr~ 478 (653)
T TIGR00232 409 GAIMNGIALH----GGFKPYGGTF--LMFVD-YARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTH--QPIEQLAS-LRA 478 (653)
T ss_pred HHHHHHHHHc----CCCeEEEEEh--HHHHH-HHHHHHHHHHhcCCCEEEEEeCCccCCCCCCccc--CCHHHHHH-Hhc
Confidence 3555666652 2122333333 35544 567888999999999999997766653 34443 23334333 333
Q ss_pred c-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 227 Y-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
. |+.++.-- |..++..+++.+++. .++|+.|-.
T Consensus 479 iPn~~v~~Pa--D~~E~~~~~~~a~~~---~~gP~~irl 512 (653)
T TIGR00232 479 IPNLSVWRPC--DGNETAAAWKYALES---QDGPTALIL 512 (653)
T ss_pred CCCCEEEeeC--CHHHHHHHHHHHHhc---CCCcEEEEE
Confidence 3 66666654 899999999988842 478988843
|
This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. |
| >PRK06154 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.23 E-value=2.5 Score=44.89 Aligned_cols=93 Identities=11% Similarity=0.043 Sum_probs=61.8
Q ss_pred ceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHH
Q 016909 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSA 245 (380)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a 245 (380)
.++++..|=|.++ ..-++..|..-+.|||+|+-........ ....-+....++.+--...+|+ +++++.+.
T Consensus 83 gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~i~G~~~~~~~~----~~~~~d~~~~~~~vtk~~~~v~--~~~~~~~~ 153 (565)
T PRK06154 83 GVFAVQYGPGAEN---AFGGVAQAYGDSVPVLFLPTGYPRGSTD----VAPNFESLRNYRHITKWCEQVT--LPDEVPEL 153 (565)
T ss_pred EEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCccccc----CCCCcchhhhHhhcceeEEECC--CHHHHHHH
Confidence 3444556888886 3355777788899999998543322110 0011233455666655566676 89999999
Q ss_pred HHHHHHHhhcc-CCcEEEEEEee
Q 016909 246 VHAAREMAIGE-GRPILIEALTY 267 (380)
Q Consensus 246 ~~~A~~~ar~~-~gP~lIe~~t~ 267 (380)
+.+|+..++.+ .||+.|++-..
T Consensus 154 i~~A~~~A~s~~~GPV~l~iP~D 176 (565)
T PRK06154 154 MRRAFTRLRNGRPGPVVLELPVD 176 (565)
T ss_pred HHHHHHHHhcCCCceEEEecchH
Confidence 99999888875 59999988654
|
|
| >PRK06546 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.09 E-value=2.2 Score=45.33 Aligned_cols=107 Identities=18% Similarity=0.034 Sum_probs=65.3
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+. +.-.++++..|=|.++ ..-++-.|...+.|||+|.-.-....... ..+...+....++.+--
T Consensus 55 ~mAdgyar~t---gk~~v~~v~~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~Qe~d~~~l~~~~tk 126 (578)
T PRK06546 55 FAAAAEAQLT---GKLAVCAGSCGPGNLH---LINGLYDAHRSGAPVLAIASHIPSAQIGS--GFFQETHPDRLFVECSG 126 (578)
T ss_pred HHHHhHHHhh---CCceEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCccccCC--CCccccChhhhccccee
Confidence 3455665542 3334455556777776 22346667788999999985332111100 11111233455555544
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
...+|. +++++...+.+|+..+....||+.|++-.
T Consensus 127 ~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~lP~ 161 (578)
T PRK06546 127 YCEMVS--SAEQAPRVLHSAIQHAVAGGGVSVVTLPG 161 (578)
T ss_pred eEeEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEcCh
Confidence 455666 88889999999998888888999998754
|
|
| >PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.07 E-value=1.7 Score=46.23 Aligned_cols=101 Identities=15% Similarity=0.074 Sum_probs=61.9
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHH-HHHHHHHcCCCEEEEEEcCCcce-eeecccccCCcCHHHHHhh
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHA-ALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~E-al~~A~~~~Lpvi~vv~NN~~~i-~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. | .++|+.+ =..|.. ..++ -.+.++..++||++++...++.. +++++. ...+++-...-
T Consensus 334 vg~A~GlA~~----G--~~p~~~~-f~~F~~-ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~--~~edia~lr~i 403 (580)
T PRK05444 334 VTFAAGLATE----G--LKPVVAI-YSTFLQ-RAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQ--GAFDLSYLRCI 403 (580)
T ss_pred HHHHHHHHHC----C--CeeEEEe-eHHHHH-HHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCcccc--ccHHHHHHhcC
Confidence 4567777763 2 3344433 345544 3344 45668889999999998766532 123322 22334333333
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
-|+.++.-- |+.+...+++.|++. .++|++|-.
T Consensus 404 P~l~V~~Ps--d~~e~~~~l~~a~~~---~~~P~~ir~ 436 (580)
T PRK05444 404 PNMVIMAPS--DENELRQMLYTALAY---DDGPIAIRY 436 (580)
T ss_pred CCCEEEeeC--CHHHHHHHHHHHHhC---CCCcEEEEe
Confidence 377766654 899999999999863 368998744
|
|
| >PRK11892 pyruvate dehydrogenase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=90.03 E-value=2.2 Score=44.25 Aligned_cols=99 Identities=19% Similarity=0.158 Sum_probs=61.3
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEe-CccccCcchHHHHHHHHH--------HcCCCEEEEEEcCCcceeeecccccCCc
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYF-GDGGTSEGDFHAALNFSA--------VTEAPVIFICRNNGWAISTPISDQFRSD 218 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~-GDG~~~eG~~~Eal~~A~--------~~~Lpvi~vv~NN~~~i~~~~~~~~~~~ 218 (380)
.+++|+|+|++ .-++++.++ .+-.. =.+-+-.|.++ ++++||+|+..|.+++..+. +.+..
T Consensus 201 ~vg~AaGlA~~-----G~rPiv~~~~~~f~~--ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~---hhs~~ 270 (464)
T PRK11892 201 FAGIGVGAAFA-----GLKPIVEFMTFNFAM--QAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAA---QHSQD 270 (464)
T ss_pred HHHHHHHHHhC-----CCEEEEEEehHHHHH--HHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCC---ccccC
Confidence 35667777774 223444443 22222 12344456677 88999999998877654333 22333
Q ss_pred CHHHHHhhc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 219 GAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 219 ~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
+ ....+.+ |+.++.-- |+.+....++.|++ .++|++|-
T Consensus 271 d-~a~~~~iPgl~V~~P~--d~~d~~~ll~~ai~----~~~Pv~il 309 (464)
T PRK11892 271 Y-AAWYSHIPGLKVVAPY--SAADAKGLLKAAIR----DPNPVIFL 309 (464)
T ss_pred H-HHHHhhCCCCEEEEeC--CHHHHHHHHHHHhh----CCCcEEEE
Confidence 3 3445544 77777644 88899999999885 36899873
|
|
| >PRK07092 benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=89.85 E-value=2.4 Score=44.56 Aligned_cols=108 Identities=17% Similarity=0.062 Sum_probs=67.5
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+ .+...++++..|=|.++ ..-++-.|..-+.|||+|+-.-.+........+ ...+....++.+--
T Consensus 62 ~~Adgyar~---tg~~~v~~vt~gpG~~N---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~-~~~d~~~l~~~~tk 134 (530)
T PRK07092 62 GMADGYAQA---TGNAAFVNLHSAAGVGN---AMGNLFTAFKNHTPLVITAGQQARSILPFEPFL-AAVQAAELPKPYVK 134 (530)
T ss_pred HHHHHHHHH---hCCceEEEeccCchHHH---HHHHHHHHhhcCCCEEEEecCCcccccCccchh-cccCHHHhhccccc
Confidence 356676655 34445566666888774 345566778889999988864333211100000 11244455655543
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
...+|. +++.+.+.+.+|+..++.++ ||+.|++-.
T Consensus 135 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~ 170 (530)
T PRK07092 135 WSIEPA--RAEDVPAAIARAYHIAMQPPRGPVFVSIPY 170 (530)
T ss_pred ceeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEccH
Confidence 444554 89999999999998887774 799998864
|
|
| >PLN02234 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=89.84 E-value=1.8 Score=46.60 Aligned_cols=100 Identities=14% Similarity=0.169 Sum_probs=59.2
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcc-eeeecccccCCcCHHHHHhhc
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA-ISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~-i~~~~~~~~~~~~~~~~a~a~ 227 (380)
+++|.|+|+. | -+++++++ +.|.+-.+-+-.+.++..++||+|+++..++. .+++++.+ ..+++-...--
T Consensus 412 Vg~AaGLA~~----G-~rPvv~~f--s~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH~~--~~Dia~lr~iP 482 (641)
T PLN02234 412 VTFAAGLACE----G-LKPFCTIY--SSFMQRAYDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHCG--AFDVTFMACLP 482 (641)
T ss_pred HHHHHHHHHC----C-CeEEEEeh--HHHHHHHHHHHHHHHhhcCCCEEEEEeCCccCCCCCccccc--cHHHHHHhcCC
Confidence 4556666653 2 34444443 44544334444567789999999999887753 23333322 22222211222
Q ss_pred CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEE
Q 016909 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILI 262 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lI 262 (380)
|+.++.-- |+.++..+++.|... .++|++|
T Consensus 483 nl~V~~Ps--d~~E~~~~l~~a~~~---~~~Pv~i 512 (641)
T PLN02234 483 NMIVMAPS--DEAELFNMVATAAAI---DDRPSCF 512 (641)
T ss_pred CCEEEeeC--CHHHHHHHHHHHHhC---CCCCEEE
Confidence 66666544 899999999887753 4689987
|
|
| >PRK05899 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=89.82 E-value=1.7 Score=46.66 Aligned_cols=103 Identities=18% Similarity=0.090 Sum_probs=64.7
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce--eeecccccCCcCHHHHHh
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGR 225 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i--~~~~~~~~~~~~~~~~a~ 225 (380)
.+++|.|+|+. |.-+++++.+ ..|. .-.++.+.+++..++|++++....+++. .++++ .+.++++-...
T Consensus 379 ~vg~A~GlA~~----G~~~pv~~t~--~~F~-~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tH--q~~edia~~r~ 449 (624)
T PRK05899 379 MAAIANGLALH----GGFIPFGGTF--LVFS-DYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTH--QPVEQLASLRA 449 (624)
T ss_pred HHHHHHHHHHc----CCCeEEEEEc--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCc--ccHHHHHHHHh
Confidence 35566666653 3223333322 3454 4677888888889999999998888654 44444 22333333222
Q ss_pred hcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 226 a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
--|+.++.- .|+.++..+++.+++. .++|++|-.
T Consensus 450 iP~~~V~~P--~d~~e~~~~l~~a~~~---~~~P~~ir~ 483 (624)
T PRK05899 450 IPNLTVIRP--ADANETAAAWKYALER---KDGPSALVL 483 (624)
T ss_pred CCCcEEEeC--CCHHHHHHHHHHHHHc---CCCCEEEEE
Confidence 236666553 4899999999998862 379998865
|
|
| >PTZ00089 transketolase; Provisional | Back alignment and domain information |
|---|
Probab=89.29 E-value=2.5 Score=45.87 Aligned_cols=101 Identities=17% Similarity=0.118 Sum_probs=64.4
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce--eeecccccCCcCHHHHHhh
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i--~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. +.-.++++.+ ..|.+ -.++.+..++..+|||+||+...+++. +++++. +..+++- .++
T Consensus 416 v~~AaGlA~~----~G~~P~~~tf--~~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq--~iedia~-lR~ 485 (661)
T PTZ00089 416 CAIMNGIAAH----GGFIPFGATF--LNFYG-YALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQ--PVETLAL-LRA 485 (661)
T ss_pred HHHHHHHHHc----CCCeEEEEeh--HHHHH-HHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcc--cHHHHHH-Hhc
Confidence 4566666651 2224555555 36655 677889999999999999997777654 333332 2233332 222
Q ss_pred c-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 227 Y-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
+ |+.+++ --|..++..+++.|+.. .++|+.|-.
T Consensus 486 iPn~~V~~--PaD~~E~~~~l~~al~~---~~gP~~irl 519 (661)
T PTZ00089 486 TPNLLVIR--PADGTETSGAYALALAN---AKTPTILCL 519 (661)
T ss_pred CCCcEEEe--cCCHHHHHHHHHHHHHc---CCCCEEEEe
Confidence 2 555555 34889999999888853 468998854
|
|
| >PLN02582 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=89.22 E-value=2.4 Score=46.03 Aligned_cols=103 Identities=13% Similarity=0.136 Sum_probs=61.9
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce-eeecccccCCcCHHHHHhh
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i-~~~~~~~~~~~~~~~~a~a 226 (380)
.++.|.|+|+. | -+++++++ ..|.+=.+-+-.+-++..++||+|++...++.. +++++.. ..|++-...-
T Consensus 410 ~vg~AaGLA~~----G-~kPvv~~f--s~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~--~~Dia~lr~i 480 (677)
T PLN02582 410 AVTFAAGLACE----G-LKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCG--AFDVTYMACL 480 (677)
T ss_pred HHHHHHHHHHC----C-CeEEEEec--HHHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcccc--cHHHHHHhcC
Confidence 34556666653 2 34555554 355442333455777899999999999776633 2333322 2233222222
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
-|+.++.-. |..++..+++.|+.. .++|++|..
T Consensus 481 Pnl~V~~Ps--d~~E~~~~l~~al~~---~~gPv~IR~ 513 (677)
T PLN02582 481 PNMVVMAPS--DEAELFHMVATAAAI---DDRPSCFRY 513 (677)
T ss_pred CCCEEEeeC--CHHHHHHHHHHHHhC---CCCCEEEEE
Confidence 366666544 889999999988863 458998853
|
|
| >TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase | Back alignment and domain information |
|---|
Probab=89.17 E-value=1.4 Score=45.05 Aligned_cols=107 Identities=18% Similarity=0.094 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+ .+.-.++++..|=|.++ ..-++..|..-+.|||+|+-.-....... ......+..+.++.+--
T Consensus 52 ~mAdgyar~---tg~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~tk 123 (432)
T TIGR00173 52 FFALGLAKA---SGRPVAVVCTSGTAVAN---LLPAVIEASYSGVPLIVLTADRPPELRGC--GANQTIDQPGLFGSYVR 123 (432)
T ss_pred HHHHHHHhc---cCCCEEEEECCcchHhh---hhHHHHHhcccCCcEEEEeCCCCHHHhCC--CCCcccchhhHHhhccc
Confidence 356666654 34456677777888876 33456667778899999975433211111 11111245556666654
Q ss_pred eEEEEeCCCHHH------HHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 230 RSIRVDGNDALA------IYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~a------v~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
...+|. ++.+ +...+++|+..+..+ .||+.|++-.
T Consensus 124 ~~~~v~--~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 165 (432)
T TIGR00173 124 WSLDLP--LPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPF 165 (432)
T ss_pred eeeeCC--CCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCC
Confidence 455554 3333 666777777666664 4899998864
|
2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis. |
| >PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.56 E-value=2.2 Score=45.56 Aligned_cols=103 Identities=9% Similarity=0.007 Sum_probs=62.3
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhc
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~ 227 (380)
.+++|.|+|+. | -+++++.+.+ |.+-.+-+-.+-++..++||+|++..-++..+++++.. ..|++-...--
T Consensus 332 ~v~~AaGlA~~----G-~~Pvv~~fs~--Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~dG~TH~~--~~Dia~lr~iP 402 (581)
T PRK12315 332 SVAFASGIAAN----G-ARPVIFVNST--FLQRAYDQLSHDLAINNNPAVMIVFGGSISGNDVTHLG--IFDIPMISNIP 402 (581)
T ss_pred HHHHHHHHHHC----c-CeEEEEeeHH--HHHHHHHHHHHHHHhcCCCEEEEEECCcccCCCccccc--cHHHHHHhcCC
Confidence 34556666653 3 3445555543 43323333455578899999999997776544554432 23333222222
Q ss_pred CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
|+.++. --|..++..+++.|++. .++|+.|-.
T Consensus 403 nl~V~~--P~d~~e~~~~l~~a~~~---~~gP~~ir~ 434 (581)
T PRK12315 403 NLVYLA--PTTKEELIAMLEWALTQ---HEHPVAIRV 434 (581)
T ss_pred CCEEEe--cCCHHHHHHHHHHHHhC---CCCcEEEEE
Confidence 565555 34889999999988752 468998854
|
|
| >PLN02225 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=88.35 E-value=2.9 Score=45.36 Aligned_cols=103 Identities=10% Similarity=0.062 Sum_probs=62.7
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce-eeecccccCCcCHHHHHhh
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i-~~~~~~~~~~~~~~~~a~a 226 (380)
.++.|.|+|.. .-++++++. ..|.+=.+-+-.+-++..++||+|+++.-++.. +++++. ...|++-...-
T Consensus 435 aVt~AAGLA~~-----G~kPvv~iy--stFlqRAyDQI~~Dval~~lpV~~vid~aGlvg~DG~TH~--g~~Dia~lr~I 505 (701)
T PLN02225 435 AVTFSAGLSSG-----GLKPFCIIP--SAFLQRAYDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQC--GAFDIAFMSSL 505 (701)
T ss_pred HHHHHHHHHHC-----CCEEEEEee--hhHHHHHHHHHHHHHHhhcCCceEEEECCccCCCCCcccc--ccHHHHHHhcC
Confidence 34556666653 335666766 466553344455567889999999998766432 233322 22344322222
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
-|+.++.-. |..++...+++|... .++|++|-.
T Consensus 506 Pnm~V~aPs--D~~El~~mL~~A~~~---~~gPv~IR~ 538 (701)
T PLN02225 506 PNMIAMAPA--DEDELVNMVATAAYV---TDRPVCFRF 538 (701)
T ss_pred CCCEEEeeC--CHHHHHHHHHHHHhc---CCCCEEEEe
Confidence 266666544 899999999887742 468999854
|
|
| >cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family | Back alignment and domain information |
|---|
Probab=88.17 E-value=7 Score=37.53 Aligned_cols=84 Identities=17% Similarity=0.044 Sum_probs=57.8
Q ss_pred eeEEEeCccc--cCcchHHHHHHHHHHcCCCEEEEEEcCC---cceeeeccc--ccCCc-CHHHHHhhcCeeEEEEeCCC
Q 016909 167 CAVTYFGDGG--TSEGDFHAALNFSAVTEAPVIFICRNNG---WAISTPISD--QFRSD-GAVVKGRAYGVRSIRVDGND 238 (380)
Q Consensus 167 ~vv~~~GDG~--~~eG~~~Eal~~A~~~~Lpvi~vv~NN~---~~i~~~~~~--~~~~~-~~~~~a~a~G~~~~~VdG~D 238 (380)
.+++++.||. ..+|..-..+.-|...++-++||+.+|. -+|...... ..... .+....+.|++|.+.|- +|
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~-~~ 244 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIV-RD 244 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEe-cC
Confidence 8999999999 8888887778888888996666555443 233211110 00111 46678899999988764 48
Q ss_pred HHHHHHHHHHHHH
Q 016909 239 ALAIYSAVHAARE 251 (380)
Q Consensus 239 ~~av~~a~~~A~~ 251 (380)
+.++..++..++.
T Consensus 245 ~~~lp~~l~~~lr 257 (266)
T cd01460 245 LNQLPSVLSDALR 257 (266)
T ss_pred hhHhHHHHHHHHH
Confidence 8888888877763
|
The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function. |
| >TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=87.62 E-value=3.4 Score=44.18 Aligned_cols=109 Identities=18% Similarity=0.152 Sum_probs=67.6
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHc--CCCEEEEEEcCCcceeeecccccCCcCHHHHHhh
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--EAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~--~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a 226 (380)
+.+|+|+++| +.++++.+-=.+++ ...|.|..++.. .+|+|+++-|.. + +...+....|.. .++.
T Consensus 59 ~~~~~GAs~a------G~ra~t~ts~~Gl~--~~~e~l~~~~~~g~~~~iV~~~~~~~-g---p~~~~~~q~d~~-~~~~ 125 (595)
T TIGR03336 59 VEVAAGAAWS------GLRAFCTMKHVGLN--VAADPLMTLAYTGVKGGLVVVVADDP-S---MHSSQNEQDTRH-YAKF 125 (595)
T ss_pred HHHHHHHHhc------CcceEEEccCCchh--hhHHHhhhhhhhcCcCceEEEEccCC-C---CccchhhHhHHH-HHHh
Confidence 5678888886 33444444333342 345667666644 457777776542 1 111111112221 3445
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 274 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~ 274 (380)
.+|+++... |+.++++...+|++.+++.+-|++|-..+ + -+|+.
T Consensus 126 ~~~~vl~p~--~~qE~~d~~~~Af~lae~~~~PV~v~~d~-~-l~h~~ 169 (595)
T TIGR03336 126 AKIPCLEPS--TPQEAKDMVKYAFELSEKFGLPVILRPTT-R-ISHMR 169 (595)
T ss_pred cCCeEECCC--CHHHHHHHHHHHHHHHHHHCCCEEEEEee-e-eccce
Confidence 688866544 89999999999999999999999998875 3 34554
|
Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase. |
| >COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.57 E-value=2.6 Score=36.47 Aligned_cols=107 Identities=15% Similarity=0.124 Sum_probs=68.0
Q ss_pred CccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHH-HHHHHcCCCEEEEEEcCCcceeeecccccC-CcCHHHHH
Q 016909 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAAL-NFSAVTEAPVIFICRNNGWAISTPISDQFR-SDGAVVKG 224 (380)
Q Consensus 147 ~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal-~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~-~~~~~~~a 224 (380)
-|++++.|+.+|-| ...+.+- ..++ |...-+| .+-..+++|++.++...++-...- ..|.+ +.-+.+..
T Consensus 53 eg~GIcAGa~lAGk-----k~ailmQ-nsGl--GNsiNal~SL~~ty~iPl~ml~ShRG~~~E~i-~AQVpmGr~~~kiL 123 (172)
T COG4032 53 EGVGICAGAYLAGK-----KPAILMQ-NSGL--GNSINALASLYVTYKIPLLMLASHRGVLKEGI-EAQVPMGRALPKIL 123 (172)
T ss_pred cceeeehhhhhcCC-----CcEEEEe-ccCc--chHHHHHHHHHHHhccchhhhhhccchhhcCC-ccccccchhhHHHH
Confidence 35677889988842 3333333 2222 2222222 223468899999988877643322 22222 33456888
Q ss_pred hhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 225 RAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 225 ~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
+..++|.+++. .+++-+..+..+...+-+..+|+.+-+
T Consensus 124 e~~~lpt~t~~--~p~Ea~~li~~~~~~a~~~s~pv~vll 161 (172)
T COG4032 124 EGLELPTYTII--GPEEALPLIENAILDAFENSRPVAVLL 161 (172)
T ss_pred hhcCCcccccC--CHHHHHHHHHHHHHHHHHcCCceEEEe
Confidence 99999999988 677878888888877777889987654
|
|
| >PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.03 E-value=4.8 Score=40.28 Aligned_cols=99 Identities=17% Similarity=0.121 Sum_probs=58.4
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEE-eCccccCcchHHHHHHHHHHc--------CCCEEEEEEcCCcceeeecccccCCc
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAALNFSAVT--------EAPVIFICRNNGWAISTPISDQFRSD 218 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~-~GDG~~~eG~~~Eal~~A~~~--------~Lpvi~vv~NN~~~i~~~~~~~~~~~ 218 (380)
.+++|.|+|++ | .++++++ +.| |.+-.+-+-.+-++.+ ++|+|++.....++..++++.+.
T Consensus 94 ~vg~AaGlA~~----G-~~Pvv~~~fa~--Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~--- 163 (355)
T PTZ00182 94 FAGFAIGAAMN----G-LRPIAEFMFAD--FIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQS--- 163 (355)
T ss_pred HHHHHHHHHhC----C-CEEEEEechhh--HHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccch---
Confidence 35667777764 2 2334433 343 3222333334445543 56888876655666666655332
Q ss_pred CHHHHHhhc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 219 GAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 219 ~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
+....+++ |+.++.-- |+.++..+++.+++. ++|++|-
T Consensus 164 -~ea~lr~iPn~~V~~Ps--d~~e~~~~l~~a~~~----~~P~~i~ 202 (355)
T PTZ00182 164 -FEAYFAHVPGLKVVAPS--DPEDAKGLLKAAIRD----PNPVVFF 202 (355)
T ss_pred -HHHHHhcCCCCEEEeeC--CHHHHHHHHHHHHhC----CCcEEEE
Confidence 22445554 67766654 889999999998863 7899773
|
|
| >PRK12754 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=86.74 E-value=3.3 Score=44.87 Aligned_cols=104 Identities=12% Similarity=0.005 Sum_probs=64.4
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
+++|.|+|+- +.-.+.++.+ ..|.+ ..++++.+++..+|||++|....+++.........+.++++-.-.--|
T Consensus 415 v~iaaGlA~~----~G~~Pf~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq~iEdla~lR~iPn 487 (663)
T PRK12754 415 TAIANGIALH----GGFLPYTSTF--LMFVE-YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPN 487 (663)
T ss_pred HHHHhhHHhc----CCCeEEEEee--HHHHH-HHHHHHHHHHHcCCCeEEEEECCccccCCCCCCcccHHHHHHHhcCCC
Confidence 4566677652 1112333333 35554 678899999999999999998888766432222233334333222225
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
+.+++- -|..++..+++.++++ .++|+.|-+
T Consensus 488 ~~V~~P--aD~~E~~~~~~~a~~~---~~gP~yirl 518 (663)
T PRK12754 488 MSTWRP--CDQVESAVAWKYGVER---QDGPTALIL 518 (663)
T ss_pred cEEecC--CCHHHHHHHHHHHHhC---CCCCEEEEe
Confidence 555553 3888999998888863 468997643
|
|
| >COG0021 TktA Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.36 E-value=2.4 Score=45.17 Aligned_cols=78 Identities=17% Similarity=0.152 Sum_probs=56.1
Q ss_pred HHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEE
Q 016909 182 FHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPIL 261 (380)
Q Consensus 182 ~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~l 261 (380)
..-++.+|+..++|++||..-..++.........+.+.++.+=.-.++.+++-- |..+...|.+.|+++ .++|+.
T Consensus 441 ~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RPa--D~~Et~~aw~~Al~~---~~gPt~ 515 (663)
T COG0021 441 ARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRPA--DANETAAAWKYALER---KDGPTA 515 (663)
T ss_pred hhHHHHHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEecC--ChHHHHHHHHHHHhc---CCCCeE
Confidence 345799999999999999999988765433333344555544444588888843 566788888888875 689998
Q ss_pred EEE
Q 016909 262 IEA 264 (380)
Q Consensus 262 Ie~ 264 (380)
|..
T Consensus 516 Lil 518 (663)
T COG0021 516 LIL 518 (663)
T ss_pred EEE
Confidence 865
|
|
| >PRK09212 pyruvate dehydrogenase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=86.21 E-value=6.1 Score=39.01 Aligned_cols=105 Identities=19% Similarity=0.116 Sum_probs=59.3
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHc--------CCCEEEEEEcCCcceeeecccccCCcC
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--------EAPVIFICRNNGWAISTPISDQFRSDG 219 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~--------~Lpvi~vv~NN~~~i~~~~~~~~~~~~ 219 (380)
.++.|.|+|++ | .++++++.. ..|.+=.+-+-.+-++.+ ++|+++...+-.++..++++.+.
T Consensus 63 ~vg~AaGlA~~----G-~~Piv~~~~-~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~---- 132 (327)
T PRK09212 63 FAGLAVGAAFA----G-LRPIVEFMT-FNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQC---- 132 (327)
T ss_pred HHHHHHHHHHc----C-CeeEEEeeh-hhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCcccccC----
Confidence 45667777764 2 244445442 111111122223344444 57888887765565555554332
Q ss_pred HHHHHhhc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 220 AVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 220 ~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
+....+++ |+.++.- .|+.++..+++.|++ .++|++|-..-.|
T Consensus 133 ~ea~~r~iP~l~V~~P--~d~~e~~~~l~~a~~----~~~Pv~i~~~~~~ 176 (327)
T PRK09212 133 YAAWYSHIPGLKVVAP--YFAADCKGLLKTAIR----DPNPVIFLENEIL 176 (327)
T ss_pred HHHHHhcCCCCEEEee--CCHHHHHHHHHHHHh----CCCcEEEEEchhh
Confidence 22445544 6666654 489999999998885 3789988444333
|
|
| >PLN02790 transketolase | Back alignment and domain information |
|---|
Probab=85.70 E-value=5.1 Score=43.41 Aligned_cols=99 Identities=18% Similarity=0.154 Sum_probs=60.6
Q ss_pred cHHHHHHHHHhhhcC-CCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce--eeecccccCCcCHHHHHh
Q 016909 149 LPHAVGAAYALKMDR-KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGR 225 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~-~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i--~~~~~~~~~~~~~~~~a~ 225 (380)
+++|.|+|+. + .-.++++.+ ..|.. ...+++.+++..+|||+||+...+.+. +++++. + +.+.+-
T Consensus 405 v~~AaGlA~~----G~G~~P~~~tf--~~F~~-~~~~~ir~~al~~lpV~~v~thdg~~~G~DG~THq--~---iedla~ 472 (654)
T PLN02790 405 GAICNGIALH----SSGLIPYCATF--FVFTD-YMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQ--P---IEHLAS 472 (654)
T ss_pred HHHHHHHHhc----CCCcEEEEEec--HHHHH-HHHHHHHHHHhcCCCeEEEEECCceeecCCCCCcc--c---HHHHHH
Confidence 4566666652 2 123344433 12232 456788889999999999997777654 333332 2 334433
Q ss_pred hc---CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 226 AY---GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 226 a~---G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
-- |+.+++ --|..++..+++.|++. .++|+.|-.
T Consensus 473 lR~iPnl~V~~--PaD~~E~~~~l~~al~~---~~gP~~irl 509 (654)
T PLN02790 473 LRAMPNILMLR--PADGNETAGAYKVAVTN---RKRPTVLAL 509 (654)
T ss_pred hcCCCCcEEEe--CCCHHHHHHHHHHHHHc---CCCCEEEEe
Confidence 33 455554 34888999999888763 468988854
|
|
| >PRK12753 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=85.52 E-value=5.1 Score=43.50 Aligned_cols=104 Identities=15% Similarity=0.008 Sum_probs=65.4
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhc
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~ 227 (380)
.+++|.|+|+- +.-.++++.+ +.|.+ -.++.+.+++..+|||++|....+++.........+.++++- .++.
T Consensus 414 mv~~aaGlA~~----~G~~P~~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq~iedla~-lR~i 485 (663)
T PRK12753 414 MTAIANGIAHH----GGFVPYTATF--LMFVE-YARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQLAS-LRLT 485 (663)
T ss_pred HHHHHHHHHHh----CCCeEEEEeh--HHHHH-HHHHHHHHHHhcCCCeEEEEeCCCcccCCCCcccccHHHHHH-HhcC
Confidence 35566677651 1223444444 36655 678899999999999999988888765322222223333332 2332
Q ss_pred -CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 228 -GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 228 -G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
|+.+++-- |..++..+++.|++. .++|+.|-+
T Consensus 486 Pn~~v~~Pa--D~~E~~~~~~~al~~---~~gP~~irl 518 (663)
T PRK12753 486 PNFSTWRPC--DQVEAAVAWKLAIER---HNGPTALIL 518 (663)
T ss_pred CCCEEEccC--CHHHHHHHHHHHHhc---CCCCEEEEe
Confidence 55565543 888999999888863 478987754
|
|
| >COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=85.18 E-value=6.3 Score=39.56 Aligned_cols=111 Identities=16% Similarity=0.187 Sum_probs=74.3
Q ss_pred CccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeee-cccccCCcCHHHHHh
Q 016909 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP-ISDQFRSDGAVVKGR 225 (380)
Q Consensus 147 ~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~-~~~~~~~~~~~~~a~ 225 (380)
+.++.++|+++|- -+..-...|.|-. ..+|++-+|+-..+|+|+++.+........ +.. ...|+... +
T Consensus 58 ~a~s~v~GA~~aG-----ar~~TaTSg~Gl~---Lm~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~--dq~D~~~~-r 126 (365)
T COG0674 58 GAISAVIGASYAG-----ARAFTATSGQGLL---LMAEALGLAAGTETPLVIVVAQRPLPSTGLPIKG--DQSDLMAA-R 126 (365)
T ss_pred HHHHHHHHHHhhC-----cceEeecCCccHH---HHHHHHHHHHhccCCeEEEEeccCcCCCcccccc--cHHHHHHH-H
Confidence 3478889998873 2344455555554 368999999999999999988877543322 111 11122221 1
Q ss_pred hcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016909 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 226 a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 270 (380)
.-||+.+... ++.+.+...-.|...+.+..-|+++-..-++..
T Consensus 127 ~~g~~~~~~~--s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~ 169 (365)
T COG0674 127 DTGFPILVSA--SVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLAS 169 (365)
T ss_pred ccCceEEeec--cHHHHHHHHHHHHHHHHHhcCCEEEeeccchhc
Confidence 1288888776 888887777778777777788999987776654
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=84.10 E-value=3.8 Score=49.14 Aligned_cols=106 Identities=15% Similarity=0.127 Sum_probs=67.5
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +...+++|..|=|.++ ..-++..|..-+.|||+|.-+-..........| ..|....++.+--
T Consensus 353 fmAdGyAR~T---gkpgV~i~TsGPG~tN---~l~av~eA~~d~vPlLvItgd~p~~~~~~ga~Q--~iDq~~lf~pvtK 424 (1655)
T PLN02980 353 FHALGYARGS---LKPAVVITSSGTAVSN---LLPAVVEASQDFVPLLLLTADRPPELQDAGANQ--AINQVNHFGSFVR 424 (1655)
T ss_pred HHHHHHHHHh---CCCEEEEEeCcHHHHH---HHHHHHHHhhcCCCEEEEeCCCCHHHhcCCCCc--ccchhhHHHhhhh
Confidence 4677777653 4556777777888876 456677788889999999876543221111111 1244556666654
Q ss_pred eEEEEeCCCHHH------HHHHHHHHHHHhhcc-CCcEEEEEE
Q 016909 230 RSIRVDGNDALA------IYSAVHAAREMAIGE-GRPILIEAL 265 (380)
Q Consensus 230 ~~~~VdG~D~~a------v~~a~~~A~~~ar~~-~gP~lIe~~ 265 (380)
...+|. ++.. +..++++|+..++.+ .||+.|++-
T Consensus 425 ~s~~v~--~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP 465 (1655)
T PLN02980 425 FFFNLP--PPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCP 465 (1655)
T ss_pred eeecCC--CccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECc
Confidence 555553 4433 346777777777676 499999996
|
|
| >CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated | Back alignment and domain information |
|---|
Probab=81.54 E-value=12 Score=36.98 Aligned_cols=99 Identities=12% Similarity=0.002 Sum_probs=53.8
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHH-HHHHHHc--------CCCEEEEEEcCCcceeeecccccCCc
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAA-LNFSAVT--------EAPVIFICRNNGWAISTPISDQFRSD 218 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Ea-l~~A~~~--------~Lpvi~vv~NN~~~i~~~~~~~~~~~ 218 (380)
.++.|+|+|++ | .+++++++.---++ -.+|- .|-++.+ ++|++++.-.-.+...++++.+
T Consensus 63 ~vg~AaGlA~~----G-~~pvv~~~~~~f~~--ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~~~G~tHs~---- 131 (327)
T CHL00144 63 FTGMAIGAAMT----G-LRPIVEGMNMGFLL--LAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQ---- 131 (327)
T ss_pred HHHHHHHHHHC----C-CEEEEEeehhhHHH--HHHHHHHHHHHHHhhccCCCccCCEEEEecCCCCCCCCccccc----
Confidence 45667777764 2 23444334311111 22333 3444444 6788887432223233443322
Q ss_pred CHHHHHhhc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 219 GAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 219 ~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
.+....+.+ |+.++.-. |+.+.+..++.|++ .++|++|-
T Consensus 132 ~~ea~~~~iPgl~V~~Ps--d~~d~~~~l~~a~~----~~~Pv~ir 171 (327)
T CHL00144 132 RLESYFQSVPGLQIVACS--TPYNAKGLLKSAIR----SNNPVIFF 171 (327)
T ss_pred cHHHHHhcCCCCEEEEeC--CHHHHHHHHHHHHh----CCCcEEEE
Confidence 233455554 66666654 89999999988875 47899874
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 380 | ||||
| 2j9f_A | 400 | Human Branched-Chain Alpha-Ketoacid Dehydrogenase- | 1e-105 | ||
| 1dtw_A | 400 | Human Branched-Chain Alpha-Keto Acid Dehydrogenase | 1e-104 | ||
| 1x7y_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 1e-104 | ||
| 1x80_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 1e-104 | ||
| 1x7w_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 1e-104 | ||
| 2bff_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 1e-104 | ||
| 1x7x_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 1e-104 | ||
| 1x7z_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 1e-103 | ||
| 1olu_A | 400 | Roles Of His291-Alpha And His146-Beta' In The Reduc | 1e-103 | ||
| 1v16_A | 400 | Crosstalk Between Cofactor Binding And The Phosphor | 1e-102 | ||
| 2bfc_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 1e-102 | ||
| 1v11_A | 400 | Crosstalk Between Cofactor Binding And The Phosphor | 1e-102 | ||
| 2bfe_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 1e-102 | ||
| 2bfb_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 1e-101 | ||
| 1v1m_A | 400 | Crosstalk Between Cofactor Binding And The Phosphor | 1e-101 | ||
| 2bfd_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 1e-101 | ||
| 1um9_A | 367 | Branched-chain 2-oxo Acid Dehydrogenase (e1) From T | 1e-61 | ||
| 3duf_A | 369 | Snapshots Of Catalysis In The E1 Subunit Of The Pyr | 4e-57 | ||
| 1w85_A | 368 | The Crystal Structure Of Pyruvate Dehydrogenase E1 | 4e-57 | ||
| 1w88_A | 368 | The Crystal Structure Of Pyruvate Dehydrogenase E1( | 1e-56 | ||
| 3dva_A | 369 | Snapshots Of Catalysis In The E1 Subunit Of The Pyr | 2e-56 | ||
| 2bp7_A | 410 | New Crystal Form Of The Pseudomonas Putida Branched | 3e-50 | ||
| 1qs0_A | 407 | Crystal Structure Of Pseudomonas Putida 2-Oxoisoval | 4e-47 | ||
| 3exe_A | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 7e-28 | ||
| 3exf_A | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 7e-28 | ||
| 3exh_C | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 1e-27 | ||
| 2ozl_A | 365 | Human Pyruvate Dehydrogenase S264e Variant Length = | 1e-27 | ||
| 3exi_A | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 2e-27 | ||
| 1ni4_A | 365 | Human Pyruvate Dehydrogenase Length = 365 | 4e-25 |
| >pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase- Decarboxylase E1b Length = 400 | Back alignment and structure |
|
| >pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive Acylation Reaction Catalyzed By Human Branched-Chain Alpha-Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 | Back alignment and structure |
|
| >pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 | Back alignment and structure |
|
| >pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 | Back alignment and structure |
|
| >pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus Thermophilus Hb8 In Apo-form Length = 367 | Back alignment and structure |
|
| >pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369 | Back alignment and structure |
|
| >pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368 | Back alignment and structure |
|
| >pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n, E183q) Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368 | Back alignment and structure |
|
| >pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369 | Back alignment and structure |
|
| >pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain Dehydrogenase (E1) Length = 410 | Back alignment and structure |
|
| >pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate Dehydrogenase (Branched-Chain Alpha-Keto Acid Dehydrogenase, E1b) Length = 407 | Back alignment and structure |
|
| >pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 | Back alignment and structure |
|
| >pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 | Back alignment and structure |
|
| >pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 | Back alignment and structure |
|
| >pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant Length = 365 | Back alignment and structure |
|
| >pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex With The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot Be Modeled Into The Electron Density Length = 382 | Back alignment and structure |
|
| >pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase Length = 365 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 380 | |||
| 2bfd_A | 400 | 2-oxoisovalerate dehydrogenase alpha subunit; oxid | 0.0 | |
| 1umd_A | 367 | E1-alpha, 2-OXO acid dehydrogenase alpha subunit; | 0.0 | |
| 1w85_A | 368 | Pyruvate dehydrogenase E1 component, alpha subunit | 1e-179 | |
| 1qs0_A | 407 | 2-oxoisovalerate dehydrogenase alpha-subunit; hete | 1e-178 | |
| 2ozl_A | 365 | PDHE1-A type I, pyruvate dehydrogenase E1 componen | 2e-78 | |
| 3mos_A | 616 | Transketolase, TK; thiamin diphosphate TPP THDP en | 4e-09 | |
| 3ahc_A | 845 | Phosphoketolase, xylulose 5-phosphate/fructose 6-p | 4e-07 | |
| 3l84_A | 632 | Transketolase; TKT, structural genomics, center fo | 2e-04 |
| >2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... Length = 400 | Back alignment and structure |
|---|
Score = 549 bits (1418), Expect = 0.0
Identities = 177/377 (46%), Positives = 247/377 (65%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE ++ SAAA+ N D V Q RE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 259
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GH +TSDDS+ +R VDE+ +W P++R
Sbjct: 260 AVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRL 319
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R R++++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 320 RHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 379
Query: 361 HSLRETIKKHPQDYPSN 377
SL ++ + + YP +
Sbjct: 380 ESLARHLQTYGEHYPLD 396
|
| >1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* Length = 367 | Back alignment and structure |
|---|
Score = 511 bits (1319), Expect = 0.0
Identities = 137/357 (38%), Positives = 202/357 (56%), Gaps = 3/357 (0%)
Query: 12 IPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTS 71
R++ ++G+ D + + ++Y DM+ + +D + R G+ SF +
Sbjct: 13 EEPIRLIGEEGEWLGDFP-LDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAA 71
Query: 72 GEEAINIASAAAIKND-DFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIH 130
G EA +A A AI+ D+V P YR+ G+ L G ++E Q KAD KGRQMP H
Sbjct: 72 GHEAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEH 131
Query: 131 YGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSA 190
GS N+FTV+S IA+ +P A GAA ++K+ R AV FGDG TSEGD++A +NF+A
Sbjct: 132 PGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAA 191
Query: 191 VTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAR 250
V AP +FI NN +AIS Q S K A+G+ VDG D LA Y V A
Sbjct: 192 VQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAV 251
Query: 251 EMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWW 310
E A P L+E YR G H+++DD ++YRP +E+ +WR +DP+ RFR+++E+ G W
Sbjct: 252 ERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLW 310
Query: 311 NGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETI 367
N + E ++R +R ++ L+EAE+A P +F DV+ P +L QE L+E +
Sbjct: 311 NEEWEEDVREEIRAELERGLKEAEEAGPVPPEWMFEDVFAEKPWHLLRQEALLKEEL 367
|
| >1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* Length = 368 | Back alignment and structure |
|---|
Score = 501 bits (1291), Expect = e-179
Identities = 130/365 (35%), Positives = 204/365 (55%), Gaps = 11/365 (3%)
Query: 6 ESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS 65
E E+ P +++L+++G+ + + ++S+ ++ MV + +D RQGR+
Sbjct: 14 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 73
Query: 66 FYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGR 125
FY T+G+EA IAS A++ +DF++P YR+ ++W G + Q F + G
Sbjct: 74 FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 129
Query: 126 QMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAA 185
Q+P N I Q A G A LKM K A A+TY GDGGTS+GDF+
Sbjct: 130 QIPEG-----VNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 184
Query: 186 LNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSA 245
+NF+ +AP IF+ +NN +AISTP+ Q + K A G+ I+VDG D LA+Y+A
Sbjct: 185 INFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAA 244
Query: 246 VHAAREMAIGEGRPILIEALTYRVGHHTTS-DDSTKYRPVDEIEWWRTTQDPVTRFRKWI 304
V AARE AI P LIE L +R G HT S DD T+YR + W +DP+ RFRK++
Sbjct: 245 VKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWA-KKDPLVRFRKFL 303
Query: 305 ESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLR 364
E+ G W+ + E+ + +++I A+++A++ K ++DL + +++ P NL+EQ +
Sbjct: 304 EAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYK 363
Query: 365 ETIKK 369
E K
Sbjct: 364 EKESK 368
|
| >1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A Length = 407 | Back alignment and structure |
|---|
Score = 500 bits (1289), Expect = e-178
Identities = 127/366 (34%), Positives = 184/366 (50%), Gaps = 9/366 (2%)
Query: 5 SESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI 64
+++++ RVLD+ G + + + M+ + D+ AQRQ ++
Sbjct: 44 ADTADLSYSLVRVLDEQGDA-QGPWAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKM 102
Query: 65 SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKG 124
SFY+ + GEEAI A A+ D P YR+ +L+ R S+ E Q N+ D KG
Sbjct: 103 SFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKG 162
Query: 125 RQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHA 184
RQ+PI Y + +FT+S +ATQ AVG A A + A + GDG T+E DFH
Sbjct: 163 RQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHT 222
Query: 185 ALNFSAVTEAPVIFICRNNGWAISTPISDQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIY 243
AL F+ V APVI NN WAIST + S +G G+ S+RVDGND +A+Y
Sbjct: 223 ALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVY 282
Query: 244 SAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKW 303
+A A E A P LIE +TYR G H+TSDD +KYRP D+ + DP+ R ++
Sbjct: 283 AASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFP-LGDPIARLKQH 341
Query: 304 IESNGWWNGDIESELRSSVRKQILHALQEAEKAEK------PPISDLFTDVYDVSPSNLR 357
+ G W+ + + ++ A +EAE+ P + +F DVY P +LR
Sbjct: 342 LIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLANGHIPSAASMFEDVYKEMPDHLR 401
Query: 358 EQEHSL 363
Q L
Sbjct: 402 RQRQEL 407
|
| >2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Length = 365 | Back alignment and structure |
|---|
Score = 244 bits (626), Expect = 2e-78
Identities = 91/327 (27%), Positives = 144/327 (44%), Gaps = 9/327 (2%)
Query: 26 PDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTSGEEAINIASAAAI 84
++ +K Y M T++ M+ + +Q I F G+EA + A I
Sbjct: 24 GPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGI 83
Query: 85 KNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADY--GKGRQMPIHYGSNKHNYFTVS 142
D ++ YR G RG S++E + G K GKG M H + N++ +
Sbjct: 84 NPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSM--HMYA--KNFYGGN 139
Query: 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN 202
+ Q+P G A A K + KD +T +GDG ++G A N +A+ + P IFIC N
Sbjct: 140 GIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICEN 199
Query: 203 NGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILI 262
N + + T + + R + +RVDG D L + A A PIL+
Sbjct: 200 NRYGMGTSVERA--AASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILM 257
Query: 263 EALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSV 322
E TYR H SD YR +EI+ R+ DP+ + + ++ + + E+ V
Sbjct: 258 ELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEV 317
Query: 323 RKQILHALQEAEKAEKPPISDLFTDVY 349
RK+I A Q A +PP+ +L +Y
Sbjct: 318 RKEIEDAAQFATADPEPPLEELGYHIY 344
|
| >3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Length = 616 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 4e-09
Identities = 36/125 (28%), Positives = 49/125 (39%), Gaps = 18/125 (14%)
Query: 149 LPHAVGAAYALK-MDRKDACAVTY--FGDGGTSEGDFHAALNFSAVTEA--PVIFICRNN 203
L A G AY K D+ Y GDG SEG A+ F A ++ I N
Sbjct: 127 LGAACGMAYTGKYFDKASYR--VYCLLGDGELSEGSVWEAMAF-ASIYKLDNLVAILDIN 183
Query: 204 GWAISTPISDQFRSDGAVVKGR--AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPIL 261
S P Q + D + + R A+G +I VDG+ + A A+ +P
Sbjct: 184 RLGQSDPAPLQHQMD--IYQKRCEAFGWHAIIVDGHSVEELCKAFGQAK------HQPTA 235
Query: 262 IEALT 266
I A T
Sbjct: 236 IIAKT 240
|
| >3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* Length = 845 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 4e-07
Identities = 29/127 (22%), Positives = 41/127 (32%), Gaps = 13/127 (10%)
Query: 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEG----DFHAALNFSAVTEAPVIFICRNNG 204
L HA GA M+ GDG G + + + T+ V+ I NG
Sbjct: 181 LSHAYGAV----MNNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNG 236
Query: 205 WAISTPISDQFRSDGAVV-KGRAYGVRSIRV----DGNDALAIYSAVHAAREMAIGEGRP 259
+ I+ P SD + R G D D ++I+ E E
Sbjct: 237 YKIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICD 296
Query: 260 ILIEALT 266
I A T
Sbjct: 297 IKAAAQT 303
|
| >3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* Length = 632 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 202 NNGWAISTPISDQFRSDGAVVKGR--AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRP 259
+N +I + F + VK R A G + ++G+D I A+ A++ +P
Sbjct: 181 SNNISIEGDVGLAFNEN---VKMRFEAQGFEVLSINGHDYEEINKALEQAKK----STKP 233
Query: 260 ILIEALT 266
LI A T
Sbjct: 234 CLIIAKT 240
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 380 | |||
| 2bfd_A | 400 | 2-oxoisovalerate dehydrogenase alpha subunit; oxid | 100.0 | |
| 1qs0_A | 407 | 2-oxoisovalerate dehydrogenase alpha-subunit; hete | 100.0 | |
| 1w85_A | 368 | Pyruvate dehydrogenase E1 component, alpha subunit | 100.0 | |
| 1umd_A | 367 | E1-alpha, 2-OXO acid dehydrogenase alpha subunit; | 100.0 | |
| 2ozl_A | 365 | PDHE1-A type I, pyruvate dehydrogenase E1 componen | 100.0 | |
| 2yic_A | 868 | 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 | 100.0 | |
| 2xt6_A | 1113 | 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET | 100.0 | |
| 2jgd_A | 933 | 2-oxoglutarate dehydrogenase E1 component; flavopr | 100.0 | |
| 2o1s_A | 621 | 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia | 100.0 | |
| 1gpu_A | 680 | Transketolase; transferase(ketone residues); HET: | 99.97 | |
| 3rim_A | 700 | Transketolase, TK; TPP, transferase; HET: TPP; 2.4 | 99.97 | |
| 1r9j_A | 673 | Transketolase; domains, EACH of the alpha/beta typ | 99.97 | |
| 2e6k_A | 651 | Transketolase; structural genomics, NPPSFA, nation | 99.97 | |
| 3mos_A | 616 | Transketolase, TK; thiamin diphosphate TPP THDP en | 99.97 | |
| 1itz_A | 675 | Transketolase; calvin cycle, cofactor, thiamine py | 99.97 | |
| 2o1x_A | 629 | 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, | 99.97 | |
| 2r8o_A | 669 | Transketolase 1, TK 1; reaction intermediate, calc | 99.96 | |
| 3l84_A | 632 | Transketolase; TKT, structural genomics, center fo | 99.96 | |
| 3uk1_A | 711 | Transketolase; structural genomics, seattle struct | 99.96 | |
| 3m49_A | 690 | Transketolase; alpha-beta-alpha sandwich, csgid, t | 99.96 | |
| 3kom_A | 663 | Transketolase; rossmann fold, csgid, transferase, | 99.96 | |
| 2qtc_A | 886 | Pyruvate dehydrogenase E1 component; thiamin dipho | 99.94 | |
| 4feg_A | 603 | Pyruvate oxidase; carbanion, structure activity re | 99.9 | |
| 3ahc_A | 845 | Phosphoketolase, xylulose 5-phosphate/fructose 6-p | 99.79 | |
| 1v5e_A | 590 | Pyruvate oxidase; oxidoreductase, flavoprotein; HE | 99.68 | |
| 2pan_A | 616 | Glyoxylate carboligase; thiamin-diphosphate (THDP) | 99.66 | |
| 2uz1_A | 563 | Benzaldehyde lyase; thiamine diphosphate, thiamine | 99.65 | |
| 2vk8_A | 563 | Pyruvate decarboxylase isozyme 1; asymmetric activ | 99.64 | |
| 1q6z_A | 528 | BFD, BFDC, benzoylformate decarboxylase; lyase, ca | 99.63 | |
| 1ozh_A | 566 | ALS, acetolactate synthase, catabolic; acetohydrox | 99.63 | |
| 2iht_A | 573 | Carboxyethylarginine synthase; thiamin diphosphate | 99.62 | |
| 1t9b_A | 677 | Acetolactate synthase, mitochondrial; acetohydroxy | 99.61 | |
| 2pgn_A | 589 | Cyclohexane-1,2-dione hydrolase (CDH); three alpha | 99.61 | |
| 3eya_A | 549 | Pyruvate dehydrogenase [cytochrome]; pyruvate oxid | 99.61 | |
| 2vbf_A | 570 | Branched-chain alpha-ketoacid decarboxylase; KDCA, | 99.6 | |
| 1ybh_A | 590 | Acetolactate synthase, chloroplast; acetohydroxyac | 99.59 | |
| 2vbi_A | 566 | Pyruvate decarboxylase; thiamine pyrophosphate, ly | 99.59 | |
| 2nxw_A | 565 | Phenyl-3-pyruvate decarboxylase; thiamine pyrophos | 99.59 | |
| 2wvg_A | 568 | PDC, pyruvate decarboxylase; thiamine diphosphate, | 99.58 | |
| 2c31_A | 568 | Oxalyl-COA decarboxylase; oxalate, thiamin diphosp | 99.58 | |
| 1ovm_A | 552 | Indole-3-pyruvate decarboxylase; thiamine diphosph | 99.58 | |
| 2q28_A | 564 | Oxalyl-COA decarboxylase; lyase, oxalate degradati | 99.56 | |
| 2x7j_A | 604 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - | 99.52 | |
| 3hww_A | 556 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 99.49 | |
| 3lq1_A | 578 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 99.45 | |
| 2c42_A | 1231 | Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, | 98.91 | |
| 2iht_A | 573 | Carboxyethylarginine synthase; thiamin diphosphate | 94.66 | |
| 1ybh_A | 590 | Acetolactate synthase, chloroplast; acetohydroxyac | 94.58 | |
| 2uz1_A | 563 | Benzaldehyde lyase; thiamine diphosphate, thiamine | 94.49 | |
| 1ozh_A | 566 | ALS, acetolactate synthase, catabolic; acetohydrox | 94.49 | |
| 2pgn_A | 589 | Cyclohexane-1,2-dione hydrolase (CDH); three alpha | 94.28 | |
| 2vbi_A | 566 | Pyruvate decarboxylase; thiamine pyrophosphate, ly | 93.8 | |
| 2wvg_A | 568 | PDC, pyruvate decarboxylase; thiamine diphosphate, | 93.74 | |
| 3eya_A | 549 | Pyruvate dehydrogenase [cytochrome]; pyruvate oxid | 93.64 | |
| 1t9b_A | 677 | Acetolactate synthase, mitochondrial; acetohydroxy | 93.6 | |
| 2q28_A | 564 | Oxalyl-COA decarboxylase; lyase, oxalate degradati | 93.5 | |
| 2nxw_A | 565 | Phenyl-3-pyruvate decarboxylase; thiamine pyrophos | 93.47 | |
| 1yd7_A | 395 | 2-keto acid:ferredoxin oxidoreductase subunit alph | 93.18 | |
| 2c31_A | 568 | Oxalyl-COA decarboxylase; oxalate, thiamin diphosp | 93.11 | |
| 1v5e_A | 590 | Pyruvate oxidase; oxidoreductase, flavoprotein; HE | 92.98 | |
| 3kom_A | 663 | Transketolase; rossmann fold, csgid, transferase, | 92.91 | |
| 4feg_A | 603 | Pyruvate oxidase; carbanion, structure activity re | 92.53 | |
| 2o1s_A | 621 | 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia | 92.48 | |
| 3mos_A | 616 | Transketolase, TK; thiamin diphosphate TPP THDP en | 92.27 | |
| 3l84_A | 632 | Transketolase; TKT, structural genomics, center fo | 92.22 | |
| 2pan_A | 616 | Glyoxylate carboligase; thiamin-diphosphate (THDP) | 92.22 | |
| 3m49_A | 690 | Transketolase; alpha-beta-alpha sandwich, csgid, t | 91.84 | |
| 2e6k_A | 651 | Transketolase; structural genomics, NPPSFA, nation | 91.73 | |
| 1qs0_B | 338 | 2-oxoisovalerate dehydrogenase beta-subunit; heter | 91.69 | |
| 2r8o_A | 669 | Transketolase 1, TK 1; reaction intermediate, calc | 91.66 | |
| 2x7j_A | 604 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - | 91.32 | |
| 1itz_A | 675 | Transketolase; calvin cycle, cofactor, thiamine py | 91.22 | |
| 2ozl_B | 341 | PDHE1-B, pyruvate dehydrogenase E1 component subun | 90.99 | |
| 2vk8_A | 563 | Pyruvate decarboxylase isozyme 1; asymmetric activ | 90.87 | |
| 1gpu_A | 680 | Transketolase; transferase(ketone residues); HET: | 90.44 | |
| 2vbf_A | 570 | Branched-chain alpha-ketoacid decarboxylase; KDCA, | 90.28 | |
| 1q6z_A | 528 | BFD, BFDC, benzoylformate decarboxylase; lyase, ca | 90.15 | |
| 1ik6_A | 369 | Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o | 89.85 | |
| 2o1x_A | 629 | 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, | 89.63 | |
| 3lq1_A | 578 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 89.45 | |
| 1r9j_A | 673 | Transketolase; domains, EACH of the alpha/beta typ | 89.3 | |
| 3rim_A | 700 | Transketolase, TK; TPP, transferase; HET: TPP; 2.4 | 89.08 | |
| 3uk1_A | 711 | Transketolase; structural genomics, seattle struct | 88.8 | |
| 1ovm_A | 552 | Indole-3-pyruvate decarboxylase; thiamine diphosph | 88.52 | |
| 1umd_B | 324 | E1-beta, 2-OXO acid dehydrogenase beta subunit; al | 85.7 | |
| 1w85_B | 324 | Pyruvate dehydrogenase E1 component, beta subunit; | 84.12 | |
| 2bfd_B | 342 | 2-oxoisovalerate dehydrogenase beta subunit; oxido | 82.21 | |
| 3hww_A | 556 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 81.04 |
| >2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-84 Score=646.19 Aligned_cols=379 Identities=47% Similarity=0.861 Sum_probs=345.6
Q ss_pred CccccCCCCCCCCeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHH
Q 016909 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIAS 80 (380)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~ 80 (380)
|+|++++....+|++||||.||++++++..+.+++++++++|+.|+++|.||+++..++++|+++|++++.||||+++|+
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~~~~~~~GqEa~~vg~ 99 (400)
T 2bfd_A 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGS 99 (400)
T ss_dssp CCCCCCCCSSCSCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTCHHHHHHH
T ss_pred eeeccCcccCCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeecCCChHHHHHHH
Confidence 68999988889999999999999988766678999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcEEEccccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhh
Q 016909 81 AAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 81 ~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k 160 (380)
+.+|+++|+|+++||+|++++++|++++++|++++|+.+++++|+++++|+..+..++..++|+||+++|+|+|+|+|.|
T Consensus 100 ~~al~~~D~v~~~yR~~~~~~~~G~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~AvG~AlA~~ 179 (400)
T 2bfd_A 100 AAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 179 (400)
T ss_dssp HHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHHH
T ss_pred HHhcCCCCEEEecCcCHHHHHHcCCCHHHHHHHhcCCCCCCCCCCCCCcCCcccccCccccCccccccccHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999998778888899999999999999999999
Q ss_pred hcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHH
Q 016909 161 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240 (380)
Q Consensus 161 ~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~ 240 (380)
+++++++|||++|||++++|.+||+||+|++|+||+||||+||+|+++++...+.+..++++++++|||++++|||+|++
T Consensus 180 ~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~ 259 (400)
T 2bfd_A 180 RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 259 (400)
T ss_dssp HHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGGTCEEEEEETTCHH
T ss_pred hhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCceeeeecccccCCCCCHHHHHHHcCCcEEEEeCCCHH
Confidence 99999999999999999999999999999999999999999999999999888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHH
Q 016909 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRS 320 (380)
Q Consensus 241 av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~ 320 (380)
+|++++++|++++|++++|+||+++|||++|||++|+|..||+++|++.|++..|||.+++++|++.|+||++++++|++
T Consensus 260 av~~a~~~A~~~ar~~~~P~lIe~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~dPl~~~~~~L~~~g~~~~~~~~~i~~ 339 (400)
T 2bfd_A 260 AVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRK 339 (400)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC-------------------CCHHHHHHHHHTTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEeeeeCCCCCCCCCccCCCHHHHHHHHhcCCHHHHHHHHHHHCCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999854589999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccccccccCCCccHHHHHHHHHHHHHhCCCCCCCCCC
Q 016909 321 SVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSNVP 379 (380)
Q Consensus 321 ~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~ 379 (380)
+++++|++++++|++.|.|+++++|++||++.++.+.+|++.|.+.+.++|++|++++|
T Consensus 340 ~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~~~~~l~~q~~~~~~~~~~~~~~~~~~~~ 398 (400)
T 2bfd_A 340 QSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHF 398 (400)
T ss_dssp HHHHHHHHHHHHHHHSCBCCGGGGSTTSSSSCCHHHHHHHHHHHHHHHHHGGGSCGGGB
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCcCCcccc
Confidence 99999999999999999999999999999999999999999999999999999998765
|
| >1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-81 Score=623.85 Aligned_cols=349 Identities=36% Similarity=0.553 Sum_probs=335.4
Q ss_pred CCeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCCCCcEEE
Q 016909 12 IPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVV 91 (380)
Q Consensus 12 ~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~~~D~v~ 91 (380)
.|++||||.+|+++++. .+.+++++++++|+.|+++|.||+++..+++||+++|+|++.||||+++|++.+|+++|+++
T Consensus 51 ~~~~~~ld~~g~~~~~~-~~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~qgr~~~~~~~~GqEA~~vg~~~al~~~D~v~ 129 (407)
T 1qs0_A 51 YSLVRVLDEQGDAQGPW-AEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMCF 129 (407)
T ss_dssp TSCBCCBCTTSCBCSGG-GSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHSCTTSEEE
T ss_pred CCeEEEECCCCCCCCcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCcCCCChHHHHHHHHHhcCCCCEEE
Confidence 47899999999988764 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEE
Q 016909 92 PQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTY 171 (380)
Q Consensus 92 ~~yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~ 171 (380)
++||+|++++++|+++.++|++++|+.+++++|+++++|+.....++++++|+||+++|+|+|+|+|.|+++++++|||+
T Consensus 130 ~~yR~~~~~l~~g~~~~~i~~el~g~~~~~~~G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i 209 (407)
T 1qs0_A 130 PTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAW 209 (407)
T ss_dssp CCSSCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred ecccchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCceeecchhccCccccccccccchhHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999999999999999999999999999999999998877899999999999999999999999999999999999
Q ss_pred eCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccc-CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHH
Q 016909 172 FGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAR 250 (380)
Q Consensus 172 ~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~ 250 (380)
+|||++++|.+||+||+|++|+||+||||+||+|+++++....+ ...+++++|++|||++++|||+|+++|++++++|+
T Consensus 210 ~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~gi~~~~~~~~~~~~d~a~~a~a~G~~~~~VdG~D~~av~~a~~~A~ 289 (407)
T 1qs0_A 210 IGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAA 289 (407)
T ss_dssp EETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHH
T ss_pred ECCchhhcChHHHHHHHHHHHCcCEEEEEECCCcceeeccccccCCCCCHHHHHHHcCCeEEEEcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887665 56789999999999999999999999999999999
Q ss_pred HHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q 016909 251 EMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHAL 330 (380)
Q Consensus 251 ~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~ 330 (380)
+++|++++|+|||++|||.+|||++|||..||+++|++.|+ ++|||.+|+++|+++|+||++++++|+++++++|++++
T Consensus 290 ~~ar~~~gP~lIe~~t~R~~Ghs~~Dd~~~Yr~~~e~~~~~-~~DPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~ 368 (407)
T 1qs0_A 290 ERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFP-LGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQ 368 (407)
T ss_dssp HHHHTTSCCEEEEEECCCCSCSSTTCCGGGTSCTTHHHHCT-TCCHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEEEeeccCCcCCCCCccccCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 59999999999999999999999999999999999999
Q ss_pred HHHHh------CCCCCCCccccccccCCCccHHHHHHH
Q 016909 331 QEAEK------AEKPPISDLFTDVYDVSPSNLREQEHS 362 (380)
Q Consensus 331 ~~a~~------~~~p~~~~~~~~vy~~~~~~~~~~~~~ 362 (380)
++|++ +|.|+++++|+|||+++|+++++|++.
T Consensus 369 ~~a~~~~~~~~~p~p~~~~~~~~vy~~~~~~l~~q~~~ 406 (407)
T 1qs0_A 369 KEAEQYGTLANGHIPSAASMFEDVYKEMPDHLRRQRQE 406 (407)
T ss_dssp HHHHTTCCSSSCCCCCSSGGGSSSSSSCCHHHHHHHHT
T ss_pred HHHHhcccccCCCCCCHHHHHhhccCCCCHHHHHHHHh
Confidence 99998 589999999999999999999999875
|
| >1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-79 Score=607.53 Aligned_cols=349 Identities=36% Similarity=0.617 Sum_probs=325.0
Q ss_pred CCCCeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCCCCcE
Q 016909 10 ERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDF 89 (380)
Q Consensus 10 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~~~D~ 89 (380)
...|++||||.+|+++++...+.+++++++++|+.|+++|.||+++.+++++|+++|+|++.||||+++|++.+|+++|+
T Consensus 18 ~~~~~~~~l~~~g~~~~~~~~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~g~~~~~~G~Ea~~vg~~~~l~~~D~ 97 (368)
T 1w85_A 18 EQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDF 97 (368)
T ss_dssp HTCCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHHHHHHHHHTCCTTCE
T ss_pred CCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCCHHHHHHHHHHhcCCcCE
Confidence 35689999999999988755578999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeE
Q 016909 90 VVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAV 169 (380)
Q Consensus 90 v~~~yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv 169 (380)
++++||+|++++++|.++..+|++++|+.+ |+ ++| ...++.+++|++|+++|+|+|+|+|.|+++++++||
T Consensus 98 v~~~~R~~~~~~~~G~~~~~~~~el~G~~~----G~--~~h---~~~~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv 168 (368)
T 1w85_A 98 ILPGYRDVPQIIWHGLPLYQAFLFSRGHFH----GN--QIP---EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAI 168 (368)
T ss_dssp EECCSSCHHHHHHTTCCHHHHHHHHHTCGG----GG--CCC---TTCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEE
T ss_pred EEecchhHHHHHhcCCCHHHHHHHHCCCCC----CC--CCC---cccccCCCccccCccccHHHHHHHHhHhhCCCCeEE
Confidence 999999999999999999999999999864 33 345 346788899999999999999999999999999999
Q ss_pred EEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHH
Q 016909 170 TYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAA 249 (380)
Q Consensus 170 ~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A 249 (380)
|++|||++++|.++|+||+|++|+||+||||+||+|+++++.....+.++++++|++|||++++|||||+++|++++++|
T Consensus 169 ~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A 248 (368)
T 1w85_A 169 TYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAA 248 (368)
T ss_dssp EEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHH
T ss_pred EEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCccceeccccccCCCCHHHHHHHCCCCEEEEcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888777789999999999999999999999999999999
Q ss_pred HHHhhccCCcEEEEEEeecCCCCC-CCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 016909 250 REMAIGEGRPILIEALTYRVGHHT-TSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILH 328 (380)
Q Consensus 250 ~~~ar~~~gP~lIe~~t~R~~gHs-~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~ 328 (380)
++++|++++|+|||++|||.+||| ++|||..||+++|++.|+ ++|||.+|+++|+++|+||++++++|+++++++|++
T Consensus 249 ~~~~r~~~gP~lIe~~t~r~~gHs~~~Ddp~~yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 327 (368)
T 1w85_A 249 RERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWA-KKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKE 327 (368)
T ss_dssp HHHHHTTSCCEEEEEECCCSSCSCSSCC------CHHHHHHHH-TTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEEeeccCCCCCCCCCccccCCHHHHHHHh-cCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 999999999999999998 599999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCccccccccCCCccHHHHHHHHHHHHH
Q 016909 329 ALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIK 368 (380)
Q Consensus 329 a~~~a~~~~~p~~~~~~~~vy~~~~~~~~~~~~~l~~~~~ 368 (380)
++++|+++|.|+++++|+|||+++++++++|++.+++.+.
T Consensus 328 a~~~a~~~p~p~~~~~~~~vy~~~~~~l~~q~~~~~~~~~ 367 (368)
T 1w85_A 328 AIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYKEKES 367 (368)
T ss_dssp HHHHHHTSCCCCHHHHHHTSCSSCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCCCHHHHHhhccCCCChHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999876543
|
| >1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-76 Score=586.82 Aligned_cols=355 Identities=39% Similarity=0.624 Sum_probs=340.8
Q ss_pred CCCCeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCCCC-c
Q 016909 10 ERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKND-D 88 (380)
Q Consensus 10 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~~~-D 88 (380)
...|++||||.+|+++++ ..+.+++++++++|+.|+++|.||.++..++++|++++++++.|+|++++++..+++++ |
T Consensus 11 ~~~~~~~~l~~~g~~~~~-~~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~~rD 89 (367)
T 1umd_A 11 FTEEPIRLIGEEGEWLGD-FPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFD 89 (367)
T ss_dssp SCSSCBCCBCTTSCBCCS-SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTS
T ss_pred CCCCeEEEECCCCCCCCc-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCCCCc
Confidence 456899999999998887 46789999999999999999999999999999999999999999999999999999998 9
Q ss_pred EEEccccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCcee
Q 016909 89 FVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 168 (380)
Q Consensus 89 ~v~~~yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~v 168 (380)
+++++||+|++++.+|+++.++|++++|+.+|++.|+++++|+.++..++.+++|++|+++|+|+|+|+|.|+.+++++|
T Consensus 90 ~i~~s~r~~~~~~~~G~~~~~~l~~~~g~~~g~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~v 169 (367)
T 1umd_A 90 WVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVA 169 (367)
T ss_dssp EEECCTTTHHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCE
T ss_pred EEEeCcHHHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCCCCCcccccCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeE
Confidence 99999999999999999999999999999999999999999998777888889999999999999999999999999999
Q ss_pred EEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHH
Q 016909 169 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 248 (380)
Q Consensus 169 v~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~ 248 (380)
||++|||++++|.++|+||+|+.|+||+||||+||+|+++++.....+..++++++++|||++++|||+|+.+|++++++
T Consensus 170 v~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~ 249 (367)
T 1umd_A 170 VCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKE 249 (367)
T ss_dssp EEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHH
T ss_pred EEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCCeeeccChhhccCCCCHHHHHHHcCCcEEEeCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887777778999999999999999999999999999999
Q ss_pred HHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 016909 249 AREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILH 328 (380)
Q Consensus 249 A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~ 328 (380)
|+++++++++|+||+++|||.+|||++|+|..||+++|++.|+ ++|||.+|+++|+++|+||++++++|+++++++|++
T Consensus 250 A~~~a~~~~gP~lIe~~t~r~~Ghs~~D~~~~Yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 328 (367)
T 1umd_A 250 AVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELER 328 (367)
T ss_dssp HHHHHHTTCCCEEEEEECCCCSCSSTTCCGGGTSCHHHHHHHH-TTCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEEEeecCCCCCCCCCccccCCHHHHHHHH-cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 599999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCccccccccCCCccHHHHHHHHHHH
Q 016909 329 ALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRET 366 (380)
Q Consensus 329 a~~~a~~~~~p~~~~~~~~vy~~~~~~~~~~~~~l~~~ 366 (380)
++++|+++|.|+++++|+|||+++++++++|++.+++.
T Consensus 329 a~~~a~~~~~p~~~~~~~~vy~~~~~~l~~q~~~~~~~ 366 (367)
T 1umd_A 329 GLKEAEEAGPVPPEWMFEDVFAEKPWHLLRQEALLKEE 366 (367)
T ss_dssp HHHHHHHTCBCCGGGGGTTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHhhhcCCCChhHHHHHHHHHhh
Confidence 99999999999999999999999999999999988654
|
| >2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-76 Score=582.22 Aligned_cols=322 Identities=28% Similarity=0.432 Sum_probs=306.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhHHHHHHHHhcCCCCcEEEccccchHHHHHcCCCH
Q 016909 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSM 107 (380)
Q Consensus 29 ~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~ 107 (380)
+.+.+++++++++|+.|+++|.||+++..+++||++ +|+|++.||||+++|++.+|+++|+++++||+|++++++|+++
T Consensus 27 ~~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~~~D~i~~~yR~~~~~~~~G~~~ 106 (365)
T 2ozl_A 27 VTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSV 106 (365)
T ss_dssp SEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhCCCCEEehHHHHHHHHHhcCCCH
Confidence 356799999999999999999999999999999999 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHH
Q 016909 108 QEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN 187 (380)
Q Consensus 108 ~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~ 187 (380)
.++|++++|+.+|+++|+++++|+.+ .++.+.+|+||+++|+|+|+|+|.|+++++++|||++|||++++|.+||+||
T Consensus 107 ~~i~~e~~g~~~g~~~g~gg~~H~~~--~~~~~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn 184 (365)
T 2ozl_A 107 REILAELTGRKGGCAKGKGGSMHMYA--KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYN 184 (365)
T ss_dssp HHHHHHHTTCTTSTTTTSSCTTCCCB--TTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCCCCCCcCc--cccCCCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHH
Confidence 99999999999999999888899854 4788888999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 188 FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 188 ~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
+|++|+||+||||+||+|+++++........++++ ++||+++++|||||+++|++++++|++++|+++||+|||++||
T Consensus 185 ~A~~~~lpvi~vv~NN~~g~~t~~~~~~~~~~~~~--ra~g~p~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~ 262 (365)
T 2ozl_A 185 MAALWKLPCIFICENNRYGMGTSVERAAASTDYYK--RGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTY 262 (365)
T ss_dssp HHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGG--TTTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECC
T ss_pred HHHHHCcCEEEEEECCCcccCCCcccccCCCCHHH--HhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEee
Confidence 99999999999999999999998777666677877 6899999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccc
Q 016909 268 RVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTD 347 (380)
Q Consensus 268 R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~ 347 (380)
|.+|||++|++..||+++|++.|++.+|||.+|+++|+++|++|++++++|+++++++|++++++|+++|.|+++++|+|
T Consensus 263 R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~p~p~~~~~~~~ 342 (365)
T 2ozl_A 263 RYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYH 342 (365)
T ss_dssp CSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHSCCCCGGGTTCS
T ss_pred cCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhh
Confidence 99999999988889999999999745799999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCc
Q 016909 348 VYDVSPS 354 (380)
Q Consensus 348 vy~~~~~ 354 (380)
||+++++
T Consensus 343 vy~~~~~ 349 (365)
T 2ozl_A 343 IYSSDPP 349 (365)
T ss_dssp SSSSCCC
T ss_pred hcCCCCh
Confidence 9998765
|
| >2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-60 Score=512.06 Aligned_cols=344 Identities=15% Similarity=0.138 Sum_probs=285.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhc------CCCCcEEEc-cccchHHHHH-
Q 016909 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAA------IKNDDFVVP-QYREPGVLLW- 102 (380)
Q Consensus 31 ~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~------l~~~D~v~~-~yR~~~~~l~- 102 (380)
+.+|+++++++|+.|+++|.||+++..++++|+. | +..||||++++++.+ ++++|++++ +||+|+++|+
T Consensus 113 ~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~-~--g~~G~Ea~~~g~~~~l~~~~~l~~~D~v~gm~hRg~~~~Lan 189 (868)
T 2yic_A 113 DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKR-F--SLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVLAN 189 (868)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGG-G--CCTTCTTHHHHHHHHHHHHHHTTCSEEEEECCSTTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-c--cCCChHHHHHHHHHHHHHhhhCCCCCEEEeccccchHHHHHH
Confidence 5799999999999999999999999999998874 2 348999999999876 458999998 7999999999
Q ss_pred -cCCCHHHHHHHhhcCCCCC-C-CCCCCccccCCCC------------CCcccccccccCccHHHHHHHHHhhhcC----
Q 016909 103 -RGFSMQEFANQCFGNKADY-G-KGRQMPIHYGSNK------------HNYFTVSSTIATQLPHAVGAAYALKMDR---- 163 (380)
Q Consensus 103 -~G~~~~~~l~e~~g~~~~~-~-~G~~~~~H~~~~~------------~~~~~~~g~lG~~~p~AvG~A~A~k~~~---- 163 (380)
+|++++++|+|++|+.+++ + .|+++++|++... .++.+++|+||+++|+|+|+|+|.|+++
T Consensus 190 ~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~P~A~G~A~A~k~~~~~~~ 269 (868)
T 2yic_A 190 IVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGE 269 (868)
T ss_dssp TTCCCHHHHTTTCC------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHHTCST
T ss_pred HhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHHHhhccCCc
Confidence 9999999999999999877 4 4566789987432 2456678999999999999999999864
Q ss_pred ------CCceeEEEeCcccc-CcchHHHHHHHHHHcCCC---EEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEE
Q 016909 164 ------KDACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR 233 (380)
Q Consensus 164 ------~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lp---vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~ 233 (380)
.+.++||++|||++ +||.+||+||+|+.|+|| +||||+||+|+++++...+.+..++.+++++|||++++
T Consensus 270 ~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g~st~~~~~~s~~~~~~~a~a~G~p~~~ 349 (868)
T 2yic_A 270 EGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFH 349 (868)
T ss_dssp TSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHHCSSSSTTGGGGGGTCCEEE
T ss_pred ccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCcccccCccccccccCHHHHHHhCCCcEEE
Confidence 56799999999996 899999999999999998 99999999999999876555666788999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHH
Q 016909 234 VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGD 313 (380)
Q Consensus 234 VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~ 313 (380)
|||||+++|+.++++|++++|++++|+||+++|||++|||++|+|. ||.+++++.|++++||+.+|+++|+++|++|++
T Consensus 350 VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~GHs~~D~p~-~~~p~~~~~~~~~~dPi~~~~~~L~~~G~~t~e 428 (868)
T 2yic_A 350 VNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPS-MTQPYMYDVIDTKRGSRKAYTEALIGRGDISMK 428 (868)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGG-GTCHHHHHHHTTCCCHHHHHHHHHHHTTSSCHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCcCcccccc-cCChHHHHHHHhCCCHHHHHHHHHHHcCCCCHH
Confidence 9999999999999999999999999999999999999999999985 566677788876789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-C-CC-CCCccccccccC----CCccHHHHHHHHHHHHHhCCCCCCCCCC
Q 016909 314 IESELRSSVRKQILHALQEAEKA-E-KP-PISDLFTDVYDV----SPSNLREQEHSLRETIKKHPQDYPSNVP 379 (380)
Q Consensus 314 ~~~~i~~~~~~~v~~a~~~a~~~-~-~p-~~~~~~~~vy~~----~~~~~~~~~~~l~~~~~~~p~~~~~~~~ 379 (380)
++++|+++++++|++++++|++. | .| +. .++.++|.+ .+....+.++.+.+.+...|+.|.++.-
T Consensus 429 e~~~i~~e~~~~v~~a~~~a~~~~p~~~~~~-~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~ 500 (868)
T 2yic_A 429 EAEDALRDYQGQLERVFNEVRELEKHEIEPS-ESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPR 500 (868)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC------------------CCCCCCHHHHHHHHHHTTCCCTTCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcccc-cccccccccccCCCCccCHHHHHHHHHhhccCCcccccchh
Confidence 99999999999999999999873 2 21 22 334455642 1233456777777788889999987753
|
| >2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-59 Score=515.50 Aligned_cols=344 Identities=15% Similarity=0.138 Sum_probs=284.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhc------CCCCcEEEc-cccchHHHHH-
Q 016909 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAA------IKNDDFVVP-QYREPGVLLW- 102 (380)
Q Consensus 31 ~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~------l~~~D~v~~-~yR~~~~~l~- 102 (380)
+.+|+++++++|+.|+++|.||+++..+|++|+. | ...||||++++++.+ ++++|++++ +||+|+++|+
T Consensus 358 ~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~-~--g~~GqEa~~~g~~~~l~~~~~l~~~D~v~gm~hRg~~~~La~ 434 (1113)
T 2xt6_A 358 DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKR-F--SLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVLAN 434 (1113)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGG-G--CCTTCTTHHHHHHHHHHHHHHTTCSEEEEECCSTTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-c--cCCChHHHHHHHHHHHHHhhhCCCCCEEEeccccchHHHHHH
Confidence 5799999999999999999999999999998875 2 238999999999777 558999998 7999999999
Q ss_pred -cCCCHHHHHHHhhcCCCCC-C-CCCCCccccCCCC------------CCcccccccccCccHHHHHHHHHhhhcC----
Q 016909 103 -RGFSMQEFANQCFGNKADY-G-KGRQMPIHYGSNK------------HNYFTVSSTIATQLPHAVGAAYALKMDR---- 163 (380)
Q Consensus 103 -~G~~~~~~l~e~~g~~~~~-~-~G~~~~~H~~~~~------------~~~~~~~g~lG~~~p~AvG~A~A~k~~~---- 163 (380)
+|++++++|+|++|+.+++ + .|+++++|++... .++.+++|+||+++|+|+|+|+|.|+++
T Consensus 435 ~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~p~A~G~A~A~k~~~~~~~ 514 (1113)
T 2xt6_A 435 IVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGE 514 (1113)
T ss_dssp TTCCCHHHHSTTC-------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHTTBST
T ss_pred HhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHHHHhccccC
Confidence 9999999999999999887 4 4566789987432 2456678999999999999999999865
Q ss_pred ------CCceeEEEeCcccc-CcchHHHHHHHHHHcCCC---EEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEE
Q 016909 164 ------KDACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR 233 (380)
Q Consensus 164 ------~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lp---vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~ 233 (380)
.+.+++|++|||++ +||.+||+||+|++|+|| +||||+||+|+++++...+.+..++.+++++|||++++
T Consensus 515 ~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gist~~~~~~s~~~~~~~a~a~G~p~~~ 594 (1113)
T 2xt6_A 515 EGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFH 594 (1113)
T ss_dssp TSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHHCSSSSTTGGGGGGTCCEEE
T ss_pred ccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcccccCccccccccCHHHHHHhcCCcEEE
Confidence 56899999999995 899999999999999998 99999999999999876555556678899999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHH
Q 016909 234 VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGD 313 (380)
Q Consensus 234 VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~ 313 (380)
|||||+++|+.+++.|++++|++++|+|||++|||++|||++|+|. ||.+++++.|++.+||+.+|+++|+++|++|++
T Consensus 595 VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~GHs~~D~p~-~~~~~~~~~~~~~~dpi~~~~~~L~~~G~~t~e 673 (1113)
T 2xt6_A 595 VNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPS-MTQPYMYDVIDTKRGSRKAYTEALIGRGDISMK 673 (1113)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGG-GTCHHHHHHHTTCCCHHHHHHHHHHHHTSSCHH
T ss_pred EcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEccCCcCCCCccc-cCChHHHHHHHhcCCHHHHHHHHHHHcCCCCHH
Confidence 9999999999999999999999999999999999999999999985 555677778876789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-C-CC-CCCccccccccC----CCccHHHHHHHHHHHHHhCCCCCCCCCC
Q 016909 314 IESELRSSVRKQILHALQEAEKA-E-KP-PISDLFTDVYDV----SPSNLREQEHSLRETIKKHPQDYPSNVP 379 (380)
Q Consensus 314 ~~~~i~~~~~~~v~~a~~~a~~~-~-~p-~~~~~~~~vy~~----~~~~~~~~~~~l~~~~~~~p~~~~~~~~ 379 (380)
++++|+++++++|++++++|++. | .| +. ..+.++|.+ .+....+.++.+.+.+...|+.|.++.-
T Consensus 674 e~~~i~~e~~~~v~~a~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~ 745 (1113)
T 2xt6_A 674 EAEDALRDYQGQLERVFNEVRELEKHEIEPS-ESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPR 745 (1113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCCCCHHHHHHHHHHTTCCCTTCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcccc-cccccccccccCCCCccCHHHHHHHHHhhccCCcccccchh
Confidence 99999999999999999999883 2 22 11 334456642 1233456777888888899999988753
|
| >2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-58 Score=498.34 Aligned_cols=362 Identities=13% Similarity=0.100 Sum_probs=282.8
Q ss_pred CCeeEeeCCCCC-CCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCC--
Q 016909 12 IPCYRVLDDDGQ-PFPDS---SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-- 85 (380)
Q Consensus 12 ~~~~~~~~~~g~-~~~~~---~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~-- 85 (380)
.|.++|+|.+|+ ++.+. ..+.+++++++++|+.|+++|.||+++..+|++||. ++..|||++++|++.+++
T Consensus 170 ~e~~~i~~~~~~~w~~~~~e~~~~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkr---f~~~G~Ea~i~g~~~~~~~a 246 (933)
T 2jgd_A 170 AEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKR---FSLEGGDALIPMLKEMIRHA 246 (933)
T ss_dssp EECSSCCCHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--C---CCCTTCTTHHHHHHHHHHHH
T ss_pred ceeeecCCHHHhHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---ccCCCchHHHHHHHHHHHHH
Confidence 356778888887 44321 135799999999999999999999999999999872 246899999999666554
Q ss_pred ----CCcEEEc-cccchHHHHH--cCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCC----------CcccccccccCc
Q 016909 86 ----NDDFVVP-QYREPGVLLW--RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKH----------NYFTVSSTIATQ 148 (380)
Q Consensus 86 ----~~D~v~~-~yR~~~~~l~--~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~----------~~~~~~g~lG~~ 148 (380)
++|++++ +||+|+++|+ +|+++.++|+|++|+.++.+.|+++++|++.... ++.+++|++|++
T Consensus 247 ~~~g~~D~v~g~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~ 326 (933)
T 2jgd_A 247 GNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIV 326 (933)
T ss_dssp HTTTCCEEEEECCSTTHHHHHHHTTCCCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCH
T ss_pred hhCCCCCEEecCCCcCHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCcccccc
Confidence 7999996 7999999999 9999999999999999888777888999875431 235778999999
Q ss_pred cHHHHHHHHHhhhcC-----CCceeEEEeCcccc-CcchHHHHHHHHHHcCCC---EEEEEEcCCcceee-ecccccCCc
Q 016909 149 LPHAVGAAYALKMDR-----KDACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAIST-PISDQFRSD 218 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~-----~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lp---vi~vv~NN~~~i~~-~~~~~~~~~ 218 (380)
+|+|+|+|+|.|+++ .+.++||++|||++ ++|.+||+||+|+.+++| +||||+||+|+|++ +...+.+..
T Consensus 327 ~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist~~~~~~~~~~ 406 (933)
T 2jgd_A 327 SPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTP 406 (933)
T ss_dssp HHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC---------------
T ss_pred cCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccCCCHHhcccch
Confidence 999999999999874 67899999999998 899999999999999999 99999999999999 888777777
Q ss_pred CHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHH
Q 016909 219 GAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVT 298 (380)
Q Consensus 219 ~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~ 298 (380)
++++++++|||++++|||+|+++|+++++.|++++|.+++|+|||++|||++||+++|+| .||+++|++.|++.+||+.
T Consensus 407 ~~~~~a~a~g~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~GH~~~D~~-~yr~~~e~~~~~~~~dPi~ 485 (933)
T 2jgd_A 407 YCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEP-SATQPLMYQKIKKHPTPRK 485 (933)
T ss_dssp CGGGGGGTTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC------------CCTTHHHHHTSCCHHH
T ss_pred hHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeecCcCcccch-hhCCHHHHHHHHccCCHHH
Confidence 899999999999999999999999999999999999999999999999999999999986 5999999999985579999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCcccccccc------CCCccHHHHHHHHHHHHHhCC
Q 016909 299 RFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKA-EKPPISDLFTDVYD------VSPSNLREQEHSLRETIKKHP 371 (380)
Q Consensus 299 ~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~~a~~~-~~p~~~~~~~~vy~------~~~~~~~~~~~~l~~~~~~~p 371 (380)
+|+++|+++|++|++++++++++++++|+++++.|++. |.|.....+..+.. ..+....+.++.+.+.+...|
T Consensus 486 ~~~~~Li~~Gv~t~~~~~~i~~~~~~~v~~a~~~A~~~~p~~~~~~~~~~~~~~~~~~~~~tg~~~~~l~~i~~~~~~~p 565 (933)
T 2jgd_A 486 IYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVP 565 (933)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHHHHHHHHHTSCCCTTEECCCGGGCTTGGGSSCCTTCCCCCCCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccccccccccCCCCCCCHHHHHHHHhhhcCCC
Confidence 99999999999999999999999999999999988773 33211123333221 112333455666666667788
Q ss_pred CCCCCC
Q 016909 372 QDYPSN 377 (380)
Q Consensus 372 ~~~~~~ 377 (380)
+.|.++
T Consensus 566 ~~~~~~ 571 (933)
T 2jgd_A 566 EAVEMQ 571 (933)
T ss_dssp TTSCCC
T ss_pred CCCccc
Confidence 888765
|
| >2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=289.86 Aligned_cols=240 Identities=15% Similarity=0.140 Sum_probs=182.0
Q ss_pred CeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCC-CCcEEE
Q 016909 13 PCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVV 91 (380)
Q Consensus 13 ~~~~~~~~~g~~~~~~~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~-~~D~v~ 91 (380)
|.+.+|+ +.-.+.+.++++.++|.++++.| |.+...+.. + ..+++++++|++.+.+++..+++ +.|+++
T Consensus 6 ~~~~~l~---~i~~p~d~~~l~~~~l~~l~~~i---R~~~~~~~~--~--~~Gh~~~~lg~~~~~~~l~~~~~~~~D~~v 75 (621)
T 2o1s_A 6 AKYPTLA---LVDSTQELRLLPKESLPKLCDEL---RRYLLDSVS--R--SSGHFASGLGTVELTVALHYVYNTPFDQLI 75 (621)
T ss_dssp TTSTTGG---GCSSHHHHTTSCGGGHHHHHHHH---HHHHHHHSC--G--GGCTHHHHHTTHHHHHHHHHHSCTTTSEEE
T ss_pred CCCchhh---hcCChHHhhhCCHHHHHHHHHHH---HHHHHHHHh--h--cCCCcCCChhHHHHHHHHHhccCCCCCEEE
Confidence 4444565 22233456689999999999998 655443331 2 23688899999999999999999 899999
Q ss_pred --ccccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCcccccccccCccHHHHHHHHHhhhcCCCcee
Q 016909 92 --PQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 168 (380)
Q Consensus 92 --~~yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~v 168 (380)
..||++++.+.+|. . +-+..++.. | +.++|+... .++...++|++|+++|+|+|+|+|.|+++++++|
T Consensus 76 ~~~gH~~y~~~~l~G~-~-~~~~~~r~~------~-g~~g~~~~~~s~~~~~~~G~~G~gl~~A~G~AlA~~~~~~~~~V 146 (621)
T 2o1s_A 76 WDVGHQAYPHKILTGR-R-DKIGTIRQK------G-GLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRT 146 (621)
T ss_dssp ESSSTTCHHHHHTTTT-G-GGGGGTTST------T-SCCSSCCTTTCTTCCSCCSSSSCHHHHHHHHHHHHHHHTSCCCE
T ss_pred EeCchHHHHHHHHhCC-H-hhhhccccc------C-CCCCCCCCCCCCCCccCCcccchHHHHHHHHHHHHHHhCCCCeE
Confidence 67999999999997 2 223333332 2 134555432 2455567999999999999999999999999999
Q ss_pred EEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCC-------------------------------
Q 016909 169 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRS------------------------------- 217 (380)
Q Consensus 169 v~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~------------------------------- 217 (380)
||++|||++++|++||+||+|+++++|+||||+||+|++++++..+...
T Consensus 147 v~v~GDG~~~~G~~~EaL~~A~~~~~pli~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~~~~~ 226 (621)
T 2o1s_A 147 VCVIGDGAITAGMAFEAMNHAGDIRPDMLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKELL 226 (621)
T ss_dssp EEEEETTGGGSHHHHHHHHHHHHHCCSEEEEEEECC--------------------------------------------
T ss_pred EEEEchhhhhccHHHHHHHHHHhhCCCEEEEEeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccchHHHHH
Confidence 9999999999999999999999999999999999999998876532110
Q ss_pred ---cCH-------HHHHhhcCeeEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016909 218 ---DGA-------VVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 218 ---~~~-------~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
.++ ..++++|||+++ +|||||++++.+++++|++ .++|+||+++|+|.+||+..
T Consensus 227 ~r~~~~~~~~~~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~----~~gP~lI~v~t~kg~G~~~~ 291 (621)
T 2o1s_A 227 KRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRD----LKGPQFLHIMTKKGRGYEPA 291 (621)
T ss_dssp ------------CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH----SCSEEEEEEECCCTTCCCCC
T ss_pred HHHHHHhhhccChhhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHH----cCCCEEEEEEEecccCCChh
Confidence 011 478999999999 9999999999999998875 47999999999999999854
|
| >1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=277.26 Aligned_cols=200 Identities=21% Similarity=0.188 Sum_probs=167.6
Q ss_pred CcEEEcc--ccc---hHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhh
Q 016909 87 DDFVVPQ--YRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 87 ~D~v~~~--yR~---~~~~l~~G~-~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k 160 (380)
.|.++.+ |-+ .+++...|. ...+-|..++. .|+.+++|+....+++...+|++|+++|+|+|+|+|.+
T Consensus 60 rDr~v~s~GH~~~~lYa~~~l~G~~~~~~~l~~~r~------~g~~~~ghp~~~~~g~~~~~G~lG~gl~~AvG~AlA~~ 133 (680)
T 1gpu_A 60 RDRFVLSNGHAVALLYSMLHLTGYDLSIEDLKQFRQ------LGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQA 133 (680)
T ss_dssp CCEEEESSGGGHHHHHHHHHHTTCSCCHHHHTTTTC------TTCSCCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHH
T ss_pred CCEEEEecchHHHHHHHHHHHhCCCCCHHHHHhhcc------cCCCCCCCCCccCCCeeeccccccchHHHHHHHHHHHH
Confidence 4766543 555 455666786 33444555654 25566889887678899999999999999999999998
Q ss_pred hcC----------CCceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 161 MDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 161 ~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
+.+ .+++|||++|||++++|++||+|++|+.++|| +|+||+||+|++++++.... ..++.+++++|||
T Consensus 134 ~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~ 212 (680)
T 1gpu_A 134 NLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISF-DEDVAKRYEAYGW 212 (680)
T ss_dssp HHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHHTC
T ss_pred HhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHHhCCCcEEEEEECCCceEeccccccc-CccHHHHHHhcCC
Confidence 764 37899999999999999999999999999996 99999999999999887664 5789999999999
Q ss_pred eEE-EEeCC-CHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCC---CCCCChhHHHHHHhCCChH
Q 016909 230 RSI-RVDGN-DALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDS---TKYRPVDEIEWWRTTQDPV 297 (380)
Q Consensus 230 ~~~-~VdG~-D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~---~~Yr~~~e~~~~~~~~DPi 297 (380)
+++ .|||| |+.++++++++|++ ..++|+||+++|+|.+||+..|++ ..||+++|++.|++ .+++
T Consensus 213 ~~~~~vdG~~d~~~l~~al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~~~~H~~~~~~ee~~~~~~-~~~~ 281 (680)
T 1gpu_A 213 EVLYVENGNEDLAGIAKAIAQAKL---SKDKPTLIKMTTTIGYGSLHAGSHSVHGAPLKADDVKQLKS-KFGF 281 (680)
T ss_dssp EEEEESCTTTCHHHHHHHHHHHHH---CTTSCEEEEEECCTTTTSTTTTSGGGSSSCCCHHHHHHHHH-HTTC
T ss_pred eEEEEecCCCCHHHHHHHHHHHHH---CCCCCEEEEEEeecccccccCCCCccCCCCCCHHHHHHHHH-HcCC
Confidence 999 99999 99999999999876 257999999999999999977653 57999999999974 5554
|
| >3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=275.15 Aligned_cols=181 Identities=22% Similarity=0.175 Sum_probs=153.9
Q ss_pred CcEEEc--cccc---hHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCcccccccccCccHHHHHHHHHh
Q 016909 87 DDFVVP--QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYAL 159 (380)
Q Consensus 87 ~D~v~~--~yR~---~~~~l~~G~-~~~~~l~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~~p~AvG~A~A~ 159 (380)
.|.++. .|-+ .+++...|+ ...+-|..|+. .|+.+++|+.. ..+++..++|++|+++|+|+|+|+|.
T Consensus 76 rDrfvls~GH~s~~lYa~l~l~G~~~~~~~l~~fr~------~gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~ 149 (700)
T 3rim_A 76 RDRFVLSAGHSSLTLYIQLYLGGFGLELSDIESLRT------WGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMAS 149 (700)
T ss_dssp CCEEEESSTTCHHHHHHHHHHTTSSCCHHHHTTTTS------TTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHH
T ss_pred CCeEEECCCchhHHHHHHHHHhCCCCCHHHHHHhhc------CCCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHH
Confidence 577664 4666 345566786 44444666665 36778899875 46788899999999999999999999
Q ss_pred hhc-------------CCCceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHh
Q 016909 160 KMD-------------RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGR 225 (380)
Q Consensus 160 k~~-------------~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~ 225 (380)
|+. +.+++|+|++|||++++|++||++|+|+.|+|| +|+||+||+|+|++++.... ..++.++++
T Consensus 150 k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~si~~~~~~~~-~~~~~~~~~ 228 (700)
T 3rim_A 150 RYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQISIEDDTNIAL-CEDTAARYR 228 (700)
T ss_dssp HHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHH
T ss_pred HHHhhhccccccccccCCCCeEEEEECCcccccChHHHHHHHHHHcCCCcEEEEEECCCcccccchhhcc-chhHHHHHH
Confidence 974 467899999999999999999999999999995 99999999999999988654 688999999
Q ss_pred hcCeeEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCC
Q 016909 226 AYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDD 277 (380)
Q Consensus 226 a~G~~~~~V-dG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd 277 (380)
+|||++++| ||||+++|++|+++|.+ .+++|+||+++|+|.+||+...+
T Consensus 229 a~G~~~~~V~DG~D~~al~~Al~~A~~---~~~~P~lI~~~T~kG~G~~~~e~ 278 (700)
T 3rim_A 229 AYGWHVQEVEGGENVVGIEEAIANAQA---VTDRPSFIALRTVIGYPAPNLMD 278 (700)
T ss_dssp HHTCEEEEEECTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTT
T ss_pred HcCCeEEEECCCCCHHHHHHHHHHHHH---cCCCCEEEEEEEEeeecCCccCC
Confidence 999999999 99999999999998875 26899999999999999986543
|
| >1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=273.84 Aligned_cols=195 Identities=21% Similarity=0.172 Sum_probs=162.8
Q ss_pred cEEE-c-cccc---hHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCcccccccccCccHHHHHHHHHhh
Q 016909 88 DFVV-P-QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 88 D~v~-~-~yR~---~~~~l~~G~-~~~~~l~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~~p~AvG~A~A~k 160 (380)
|.++ + .|-. .+++...|+ ...+-|..++. .|+.+++|+... .+++..++|+||+++|+|+|+|+|.|
T Consensus 60 Drfvls~GH~~~~lYa~l~l~G~~~~~~~l~~~r~------~~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~ 133 (673)
T 1r9j_A 60 DRFVMSNGHGCALQYALLHMAGYNLTMDDLKGFRQ------DGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEA 133 (673)
T ss_dssp CEEEESSGGGHHHHHHHHHHHTCSCCHHHHHTTTS------TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHH
T ss_pred CeEEEccccHHHHHHHHHHHcCCCCCHHHHHhhcc------CCCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHH
Confidence 6655 3 3555 345556787 44555666665 367788898754 57888899999999999999999998
Q ss_pred hcC----------CCceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 161 MDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 161 ~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
+.+ .+++|+|++|||++++|++||++++|++++|| +|+||+||+|++++++.... ..++.+++++|||
T Consensus 134 ~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~~i~~~~~~~~-~~d~~~~~~a~G~ 212 (673)
T 1r9j_A 134 HLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYISIDGSTSLSF-TEQCHQKYVAMGF 212 (673)
T ss_dssp HHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSBCSSSBGGGTC-CCCHHHHHHHTTC
T ss_pred HhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHHHHHhCCCcEEEEEECCCCccccchhhcc-CHhHHHHHHHCCC
Confidence 764 58899999999999999999999999999995 99999999999999988776 6899999999999
Q ss_pred eEE-EEeC-CCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCC---CCCCCChhHHHHHHh
Q 016909 230 RSI-RVDG-NDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDD---STKYRPVDEIEWWRT 292 (380)
Q Consensus 230 ~~~-~VdG-~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd---~~~Yr~~~e~~~~~~ 292 (380)
+++ .||| ||++++++|+++|.+ ..++|+||+++|+|.+||+..|. +..+++++|++.|++
T Consensus 213 ~~~~~vdG~~d~~~l~~Al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~~~~H~~~~~~ee~~~~~~ 277 (673)
T 1r9j_A 213 HVIEVKNGDTDYEGLRKALAEAKA---TKGKPKMIVQTTTIGFGSSKQGTEKVHGAPLGEEDIANIKA 277 (673)
T ss_dssp EEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTSTTTTSGGGTSSCCCHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHH---cCCCCEEEEEecccccccccCCCcccccCCCCHHHHHHHHH
Confidence 999 8999 999999999998875 26899999999999999985443 234678889888863
|
| >2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-31 Score=280.28 Aligned_cols=198 Identities=22% Similarity=0.182 Sum_probs=164.6
Q ss_pred cEEEc--cccc---hHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCcccccccccCccHHHHHHHHHhh
Q 016909 88 DFVVP--QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 88 D~v~~--~yR~---~~~~l~~G~-~~~~~l~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~~p~AvG~A~A~k 160 (380)
|.++. .|-+ .+++...|. ...+-|..++.. |+..++|+... .+++...+|++|+++|.|+|+|+|.+
T Consensus 62 Dr~vls~GH~~~~lYa~l~l~G~~~~~~~l~~~r~~------~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~ 135 (651)
T 2e6k_A 62 DRFVLSAGHGSMLLYAVLHLTGYDLPLEELKSFRQW------GSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAER 135 (651)
T ss_dssp CEEEESSGGGHHHHHHHHHHTTCSCCHHHHTTTTST------TCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHH
T ss_pred CeEEEeCcchhHHHHHHHHHhCCCCCHHHHHHhhcc------CCCCCCCCCCCCCCCeeeccccccchHHHHHHHHHHHH
Confidence 66553 3666 455666786 444445556542 55557787643 46888899999999999999999998
Q ss_pred hcC----------CCceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 161 MDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 161 ~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
+.+ .+++|||++|||++++|++||+|++|++++|| +|+||+||+|++++++.... ..++.+++++|||
T Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~ 214 (651)
T 2e6k_A 136 KLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNRISIDGPTDLAF-TEDVLARYRAYGW 214 (651)
T ss_dssp HHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECCEETTEEGGGTC-CSCHHHHHHHTTC
T ss_pred hhcccccccccCCCCCEEEEEEChhhhchhHHHHHHHHHHHcCCCeEEEEEECCCccccccccccc-CccHHHHHHhCCC
Confidence 765 68899999999999999999999999999996 99999999999999888766 6789999999999
Q ss_pred eEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCC----CChhHHHHHHhCCChHH
Q 016909 230 RSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKY----RPVDEIEWWRTTQDPVT 298 (380)
Q Consensus 230 ~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Y----r~~~e~~~~~~~~DPi~ 298 (380)
+++ +|||||+.++++++++|++ .++|+||+++|+|.+||+ .+++..| ++++|+++|+ +++|+.
T Consensus 215 ~~~~~vdG~d~~~l~~al~~a~~----~~~P~lI~~~t~kg~G~~-~~~~~~~H~~~~~~~e~~~~~-~~~~~~ 282 (651)
T 2e6k_A 215 QTLRVEDVNDLEALRKAIKLAKL----DERPTLIAVRSHIGFGSP-KQDSAKAHGEPLGPEAVEATR-RNLGWP 282 (651)
T ss_dssp EEEEESCTTCHHHHHHHHHHHHH----SSSCEEEEEECCTTTTST-TTTSGGGTSSCCHHHHHHHHH-HHHTCC
T ss_pred eEEEEeCCCCHHHHHHHHHHHHH----CCCCEEEEEEeEeccccc-ccccccccccCCCHHHHHHHH-HHcCCC
Confidence 999 9999999999999998875 579999999999999999 5555555 5788999997 477764
|
| >3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-30 Score=267.69 Aligned_cols=233 Identities=20% Similarity=0.180 Sum_probs=174.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchh-HHHHHHHHhcCC---------CCcEEEcc--ccch--
Q 016909 32 KVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGE-EAINIASAAAIK---------NDDFVVPQ--YREP-- 97 (380)
Q Consensus 32 ~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~Gq-Ea~~~~~~~~l~---------~~D~v~~~--yR~~-- 97 (380)
.+++....++-+....+|.+=-.+......|.++. ++|- |...+-....|+ +.|.++.+ |-+.
T Consensus 4 ~~~~~~~~~l~~~a~~iR~~~i~~~~~~~~GH~g~---~l~~~e~~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~l 80 (616)
T 3mos_A 4 KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTS---CCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPIL 80 (616)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHH---HHTTHHHHHHHHHTTCBCCTTCTTCTTSCEEEESSGGGHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHhcCCCcCCc---chhHHHHHHHHHHHhhccCCCCCCCCCCCeEEEcCccHHHHH
Confidence 45555555555555566665444433333455432 2332 333222223442 25776653 5552
Q ss_pred -HHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCC-CceeEEEeCcc
Q 016909 98 -GVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRK-DACAVTYFGDG 175 (380)
Q Consensus 98 -~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~-~~~vv~~~GDG 175 (380)
+++...|+...+-|..++. .|+++++|+....+++..++|++|+++|+|+|+|+|.++.+. +++|||++|||
T Consensus 81 y~~~~l~G~~~~~~l~~~r~------~~s~l~ghp~~~~~~~d~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG 154 (616)
T 3mos_A 81 YAVWAEAGFLAEAELLNLRK------ISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDG 154 (616)
T ss_dssp HHHHHHTTSSCGGGGGGTTC------TTCSCCSSCCTTSTTCSSCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETG
T ss_pred HHHHHHcCCCCHHHHHHhcc------CCCCCCCCCCCCCCcccccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 3555678644444556654 377889998866677777899999999999999999986555 68999999999
Q ss_pred ccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhh
Q 016909 176 GTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAI 254 (380)
Q Consensus 176 ~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar 254 (380)
++++|++||+|++|+.++|| +|+|++||+|++++++.......++.+++++|||++++|||||++++.++++++
T Consensus 155 ~~~eG~~~Eal~~A~~~~l~~livi~nnN~~~i~~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~----- 229 (616)
T 3mos_A 155 ELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA----- 229 (616)
T ss_dssp GGGSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBCTTTTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSC-----
T ss_pred ccccCcHHHHHHHHHHcCCCcEEEEEECCCCCCcCCcccccChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhc-----
Confidence 99999999999999999996 889999999999998877766678999999999999999999999999988543
Q ss_pred ccCCcEEEEEEeecCCCCCCCCCCC
Q 016909 255 GEGRPILIEALTYRVGHHTTSDDST 279 (380)
Q Consensus 255 ~~~gP~lIe~~t~R~~gHs~~Dd~~ 279 (380)
.++|+||+++|+|.+||+..+++.
T Consensus 230 -~~~P~lI~v~T~kg~G~~~~e~~~ 253 (616)
T 3mos_A 230 -KHQPTAIIAKTFKGRGITGVEDKE 253 (616)
T ss_dssp -CSSCEEEEEECCTTTTSTTTTTCS
T ss_pred -CCCCEEEEEEEecccccccccCch
Confidence 579999999999999998776654
|
| >1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-29 Score=263.29 Aligned_cols=245 Identities=20% Similarity=0.144 Sum_probs=183.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHH---hcCC-------CCcEEEc--cccc--
Q 016909 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASA---AAIK-------NDDFVVP--QYRE-- 96 (380)
Q Consensus 31 ~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~---~~l~-------~~D~v~~--~yR~-- 96 (380)
+.|+.++|.++ ...+|.+--.+......|.++ +++|.--+.+++- ..++ +.|.++. .|-+
T Consensus 9 ~~l~~~~l~~~---a~~iR~~~~~~v~~a~~GH~g---~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~ 82 (675)
T 1itz_A 9 KAATGELLEKS---VNTIRFLAIDAVEKANSGHPG---LPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCML 82 (675)
T ss_dssp -CCCHHHHHHH---HHHHHHHHHHHHHHHTCSCCH---HHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHH
T ss_pred CCCCHHHHHHH---HHHHHHHHHHHHHHcCCCccC---ccHhHHHHHHHHHHHHhcCCcCCCCCCCCCeEEEcCcchHHH
Confidence 47888888754 334455433344333455543 3344333333333 1232 2366553 3666
Q ss_pred -hHHHHHcCC--CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCcccccccccCccHHHHHHHHHhhhcC---------
Q 016909 97 -PGVLLWRGF--SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDR--------- 163 (380)
Q Consensus 97 -~~~~l~~G~--~~~~~l~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~~p~AvG~A~A~k~~~--------- 163 (380)
.+++...|. ...+-|..++.. |+..++|+... .+++..++|++|+++|+|+|+|+|.|+.+
T Consensus 83 lYa~l~l~G~~~~~~~~l~~~r~~------~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~ 156 (675)
T 1itz_A 83 QYALLHLAGYDSVKEEDLKQFRQW------GSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSE 156 (675)
T ss_dssp HHHHHHHHTCTTCCHHHHTTTTST------TCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBC
T ss_pred HHHHHHHcCCCCCCHHHHHhcccC------CCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhcccccccccC
Confidence 455566776 344445556542 55667888753 57888899999999999999999998765
Q ss_pred -CCceeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEE-EEeCC-CH
Q 016909 164 -KDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSI-RVDGN-DA 239 (380)
Q Consensus 164 -~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~-~VdG~-D~ 239 (380)
++++|||++|||++++|++||+|++|+.++| |+|+||+||+|++++++.... ..++.+++++|||+++ .|||| |+
T Consensus 157 ~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~ 235 (675)
T 1itz_A 157 IVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAF-TEDVSTRFEALGWHTIWVKNGNTGY 235 (675)
T ss_dssp CCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTTCH
T ss_pred CCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccCCCChhhhc-ChhHHHHHHhCCCEEEEEecCCCCH
Confidence 6889999999999999999999999999999 799999999999999887765 7889999999999999 89999 99
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCC----CCCChhHHHHHH
Q 016909 240 LAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDST----KYRPVDEIEWWR 291 (380)
Q Consensus 240 ~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~----~Yr~~~e~~~~~ 291 (380)
+++++++++|++. .++|+||+++|+|.+||+..+++. .+.+++|++.++
T Consensus 236 ~~l~~al~~a~~~---~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~~~~e~~~~~~ 288 (675)
T 1itz_A 236 DDIRAAIKEAKAV---TDKPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVEATR 288 (675)
T ss_dssp HHHHHHHHHHHHC---CSSCEEEEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHC---CCCeEEEEEeeecccCcccccCcccccCCCCCHHHHHHHH
Confidence 9999999988752 579999999999999998654433 245677777775
|
| >2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=275.45 Aligned_cols=224 Identities=16% Similarity=0.123 Sum_probs=172.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCC-CCcEEEccccchH---HHHHc
Q 016909 28 SSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQYREPG---VLLWR 103 (380)
Q Consensus 28 ~~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~-~~D~v~~~yR~~~---~~l~~ 103 (380)
.+.+.++.++|.++|+.| |.+...+. .+ ..|++++++|+-.+..++...++ +.|+++.. |||+ +.+..
T Consensus 20 ~d~~~l~~~~l~~l~~~i---R~~~~~~~---~~-~~Gh~~~~lg~v~l~~aL~~~~~~~~D~~v~~-~GH~~y~~~~l~ 91 (629)
T 2o1x_A 20 KDLKRLSREQLPALTEEL---RGEIVRVC---SR-GGLHLASSLGAVDIITALHYVLDSPRDRILFD-VGHQAYAHKILT 91 (629)
T ss_dssp HHHTTSCGGGHHHHHHHH---HHHHHHHH---TT-SSSCHHHHHHTHHHHHHHHHHSCTTTSEEEES-SSTTCHHHHHTT
T ss_pred hhhhhCCHHHHHHHHHHH---HHHHHHHH---Hh-cCCcCCCchhHHHHHHHHHhhcCCCCCeEEec-CchHHHHHHHHh
Confidence 345679999999999999 54433322 22 24688899999666555555568 89999998 9985 67777
Q ss_pred CC-CHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcch
Q 016909 104 GF-SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD 181 (380)
Q Consensus 104 G~-~~~~~l~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~ 181 (380)
|. +.-..+.++.| .++|+.. ..++..+.+|++|+++|+|+|+|+|.|+++++++|||++|||++++|+
T Consensus 92 G~~~~~~~~r~~~g----------~~G~p~~~~s~~~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~ 161 (629)
T 2o1x_A 92 GRRDQMADIKKEGG----------ISGFTKVSESEHDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGM 161 (629)
T ss_dssp TTGGGGGGTTSTTS----------CCSSCCGGGCTTCCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHH
T ss_pred CcHhHHhCcccCCC----------CCCCCCCCCCCCCCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccH
Confidence 86 22222333333 1233321 123556779999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEEcCCcceeeecccccC--------------------------C---------cC-H-----
Q 016909 182 FHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR--------------------------S---------DG-A----- 220 (380)
Q Consensus 182 ~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~--------------------------~---------~~-~----- 220 (380)
+||+||+|+++++|+||||+||+|++++++..+.. . .+ +
T Consensus 162 ~~EaL~~A~~~~~pli~IvnnN~~~i~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~ 241 (629)
T 2o1x_A 162 ALAALNTIGDMGRKMLIVLNDNEMSISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFD 241 (629)
T ss_dssp HHHHHHHHHHHCCSEEEEEEECSBSSSBCCSSHHHHC-------------------------------------------
T ss_pred HHHHHHHHHhhCCCEEEEEECCCCCCCCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999876642100 0 03 2
Q ss_pred -H--HHHhhcCeeEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCC
Q 016909 221 -V--VKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 273 (380)
Q Consensus 221 -~--~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 273 (380)
. +++++|||+++ +|||||++++.+++++|++ .++|+||+++|++..||+
T Consensus 242 p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~----~~~P~lI~v~t~kg~G~~ 294 (629)
T 2o1x_A 242 PASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVD----LDGPTILHIVTTKGKGLS 294 (629)
T ss_dssp --CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHTT----SSSEEEEEEECCTTTTCH
T ss_pred cccchHHHhcCCeEEeeECCcCHHHHHHHHHHHHh----cCCCEEEEEEEecCCCCC
Confidence 3 78999999999 9999999999999988754 579999999999999987
|
| >2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=261.48 Aligned_cols=196 Identities=23% Similarity=0.227 Sum_probs=161.8
Q ss_pred CcEEEc--cccc---hHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCcccccccccCccHHHHHHHHHh
Q 016909 87 DDFVVP--QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYAL 159 (380)
Q Consensus 87 ~D~v~~--~yR~---~~~~l~~G~-~~~~~l~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~~p~AvG~A~A~ 159 (380)
.|.++. .|-+ .+++...|. ...+-|..++.. |+..++|+... .+++...+|++|+++|.|+|+|+|.
T Consensus 57 rDr~v~s~GH~~~~lYa~~~l~G~~~~~~~l~~~r~~------~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~ 130 (669)
T 2r8o_A 57 RDRFVLSNGHGSMLIYSLLHLTGYDLPMEELKNFRQL------HSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAE 130 (669)
T ss_dssp CCEEEESSGGGHHHHHHHHHHHTCSCCHHHHTTTTST------TCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHH
T ss_pred CCeEEEeCccHHHHHHHHHHHcCCCCCHHHHHHhhcC------CCCCCCCCCccCCCCcccccccccchHHHHHHHHHHH
Confidence 465544 3655 455566776 334445555542 55557888643 5788899999999999999999999
Q ss_pred hhcC----------CCceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 160 KMDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 160 k~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
++.+ .+++|||++|||++++|++||+|++|+.++|| +|+||+||+|++++++.... ..++.+++++||
T Consensus 131 ~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G 209 (669)
T 2r8o_A 131 KTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYG 209 (669)
T ss_dssp HHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTT
T ss_pred HHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHHcCCCcEEEEEECCCcEecccccccc-CccHHHHHHHCC
Confidence 8654 37899999999999999999999999999996 99999999999999887654 578999999999
Q ss_pred eeEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC-CCCC---CCCCChhHHHHHHh
Q 016909 229 VRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT-SDDS---TKYRPVDEIEWWRT 292 (380)
Q Consensus 229 ~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~-~Dd~---~~Yr~~~e~~~~~~ 292 (380)
|+++ +|||||+.++++++++|.+ ..++|+||+++|+|..||+. .+++ ..||+++|++.|++
T Consensus 210 ~~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~~~~ee~~~~~~ 275 (669)
T 2r8o_A 210 WHVIRDIDGHDAASIKRAVEEARA---VTDKPSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTRE 275 (669)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHH
T ss_pred CeEEeEECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeEeccCcCCcCCCCcccCCCCCHHHHHHHHH
Confidence 9999 9999999999999999876 25799999999999999994 4443 57999999999863
|
| >3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=251.17 Aligned_cols=218 Identities=21% Similarity=0.204 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCC---------CCcEEEcc--ccc---hHHHHHcCC-CHHHHH
Q 016909 47 TLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQ--YRE---PGVLLWRGF-SMQEFA 111 (380)
Q Consensus 47 ~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~---------~~D~v~~~--yR~---~~~~l~~G~-~~~~~l 111 (380)
.+|.+=-.+......|.++ +++|---+.+++...|+ +.|.++.+ |-+ .++++..|+ ...+-|
T Consensus 12 ~iR~~~i~~v~~a~~GH~g---~~lg~~ei~~~L~~~~~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~~~~~~l 88 (632)
T 3l84_A 12 TLRFLSADMVQKANSGHPG---APLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLEDL 88 (632)
T ss_dssp HHHHHHHHHHHHHTCSCCH---HHHHHHHHHHHHTTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHHTCSCCHHHH
T ss_pred HHHHHHHHHHHhcCCCCCC---cChhHHHHHHHHHHHhCcCCCCCCCCCCCEEEEcCCcccHHHHHHHHHhCCCCCHHHH
Confidence 3454433333322345433 34444444445555564 46777653 666 456666786 444446
Q ss_pred HHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCC-------CceeEEEeCccccCcchHHH
Q 016909 112 NQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRK-------DACAVTYFGDGGTSEGDFHA 184 (380)
Q Consensus 112 ~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~-------~~~vv~~~GDG~~~eG~~~E 184 (380)
..++. .|+..++|+....+++..++|++|+++|+|+|+|+|.++.+. +++|||++|||++++|++||
T Consensus 89 ~~~r~------~~s~~~ghp~~~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~E 162 (632)
T 3l84_A 89 KNFRQ------LHSKTPGHPEISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYE 162 (632)
T ss_dssp TTTTC------TTCSSCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHH
T ss_pred HHHhc------CCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHH
Confidence 66654 255567888766678888999999999999999999997653 88999999999999999999
Q ss_pred HHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 185 ALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 185 al~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
++++|++++|| +|+|++||+|++++++.... .+++.+++++|||++++|||||++++.+++++|.+ .++|+||+
T Consensus 163 al~~A~~~~L~~livi~nnN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~vdGhd~~~l~~al~~A~~----~~~P~lI~ 237 (632)
T 3l84_A 163 ACSLAGLHKLDNFILIYDSNNISIEGDVGLAF-NENVKMRFEAQGFEVLSINGHDYEEINKALEQAKK----STKPCLII 237 (632)
T ss_dssp HHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTTCEEEEEETTCHHHHHHHHHHHHT----CSSCEEEE
T ss_pred HHHHHHHcCCCcEEEEEECCCcccccchhhhc-ChhHHHHHHHcCCeEEEEeeCCHHHHHHHHHHHHh----CCCCEEEE
Confidence 99999999995 99999999999999887654 57899999999999999999999999999887754 68999999
Q ss_pred EEeecCCCCCCCCCC
Q 016909 264 ALTYRVGHHTTSDDS 278 (380)
Q Consensus 264 ~~t~R~~gHs~~Dd~ 278 (380)
++|++.+||+...++
T Consensus 238 v~T~kG~G~~~~e~~ 252 (632)
T 3l84_A 238 AKTTIAKGAGELEGS 252 (632)
T ss_dssp EECCTTTTCGGGTTC
T ss_pred EeeEeeecCCCCCCc
Confidence 999999999865443
|
| >3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=259.87 Aligned_cols=193 Identities=24% Similarity=0.233 Sum_probs=145.1
Q ss_pred CcEEEcc--ccc---hHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCcccccccccCccHHHHHHHHHh
Q 016909 87 DDFVVPQ--YRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYAL 159 (380)
Q Consensus 87 ~D~v~~~--yR~---~~~~l~~G~-~~~~~l~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~~p~AvG~A~A~ 159 (380)
.|.++.+ |-+ .+++...|+ ...+-|..|+.. |+..++|+.. ..+++..++|++|+++|+|+|+|+|.
T Consensus 98 rDrfvls~GH~s~~lYa~l~l~G~~~~~~~l~~~r~~------~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~ 171 (711)
T 3uk1_A 98 RDRFVLSNGHGSMLLYSLLHLTGYDLPIEELKNFRQL------HSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGE 171 (711)
T ss_dssp CCEEEECSGGGHHHHHHHHHHHTCSCCHHHHHTTTST------TCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHH
T ss_pred CCeEEEeCCcccHHHHHHHHHhCCCCCHHHHHhhccc------cCCCCCCCCCCCCCCcccCccchhhHHHHHHHHHHHH
Confidence 5776643 555 334556786 444556666653 5566788864 35788889999999999999999999
Q ss_pred hhcCC----------CceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 160 KMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 160 k~~~~----------~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
|+.+. +++|||++|||++++|++||+|++|++++|| +|+||+||+|++++++.... .+++.+++++||
T Consensus 172 ~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~-~~d~~~~~~a~G 250 (711)
T 3uk1_A 172 ALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISIDGDVVNWF-HDDTPKRFEAYG 250 (711)
T ss_dssp HHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTT
T ss_pred HhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCCcccccchhhhc-CCCHHHHHHHcC
Confidence 87653 7899999999999999999999999999996 99999999999999887764 578999999999
Q ss_pred eeEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCC----ChhHHHHH
Q 016909 229 VRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYR----PVDEIEWW 290 (380)
Q Consensus 229 ~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr----~~~e~~~~ 290 (380)
|++++ |||||++++.+++++|.+ .++|+||+++|+|.+||+..+++..|. +++|++..
T Consensus 251 ~~~~~~vdG~d~~~l~~Al~~A~~----~~~P~lI~v~T~kG~G~~~~e~~~~~Hg~~l~~e~~~~~ 313 (711)
T 3uk1_A 251 WNVIPNVNGHDVDAIDAAIAKAKR----SDKPSLICCKTRIGNGAATKAGGHDVHGAPLGADEIAKT 313 (711)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHTT----CSSCEEEEEEC--------------------CHHHHHHH
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHh----CCCCEEEEEccccccCCCCCCCcccccCCCCCHHHHHHH
Confidence 99999 999999999999887753 689999999999999998655544443 34555443
|
| >3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-28 Score=255.53 Aligned_cols=195 Identities=24% Similarity=0.260 Sum_probs=156.5
Q ss_pred CCcEEEcc--ccch---HHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCcccccccccCccHHHHHHHHH
Q 016909 86 NDDFVVPQ--YREP---GVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYA 158 (380)
Q Consensus 86 ~~D~v~~~--yR~~---~~~l~~G~-~~~~~l~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~~p~AvG~A~A 158 (380)
+.|.++.+ |-+. +++...|+ ...+-|..++. .|+..++|+.. ..+++..++|++|+++|+|+|+|+|
T Consensus 82 ~rDrfvls~GH~~~~lYa~l~l~G~~~~~~~l~~~rq------~gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA 155 (690)
T 3m49_A 82 NRDRFVLSAGHGSMLLYSLLHLSGYDVTMDDLKNFRQ------WGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMA 155 (690)
T ss_dssp TSCEEEESSGGGHHHHHHHHHHTTSSCCHHHHTTTTC------TTCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHH
T ss_pred CCCeEEECCccHHHHHHHHHHHHCCCCCHHHHHhhcc------CCCCCCCCCCCCCCCccccCCccccccHHHHHHHHHH
Confidence 46876643 5552 45556786 34444666654 36667789875 4678888999999999999999999
Q ss_pred hhhcCC----------CceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhc
Q 016909 159 LKMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 159 ~k~~~~----------~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~ 227 (380)
.|+.+. +++|||++|||++++|++||++++|++++|| +|+|++||+|+|++++.... ..++.+++++|
T Consensus 156 ~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~-~~d~~~~~~a~ 234 (690)
T 3m49_A 156 ERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRSF-SESVEDRYKAY 234 (690)
T ss_dssp HHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBGGGTC-CCCHHHHHHHH
T ss_pred HHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECCCeecccchhhcc-chhHHHHHHHc
Confidence 987543 7899999999999999999999999999995 99999999999999887554 57899999999
Q ss_pred CeeEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCC----ChhHHHHH
Q 016909 228 GVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYR----PVDEIEWW 290 (380)
Q Consensus 228 G~~~~~V-dG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr----~~~e~~~~ 290 (380)
||++++| ||||++++.+++++|.+ ..++|+||+++|+|..|++..+++..|. ++++++..
T Consensus 235 G~~~~~v~DG~d~~~l~~Al~~a~~---~~~~P~lI~v~T~kG~G~~~~~~~~~~Hg~~~~~e~~~~~ 299 (690)
T 3m49_A 235 GWQVIRVEDGNDIEAIAKAIEEAKA---DEKRPTLIEVRTTIGFGSPNKSGKSASHGSPLGVEETKLT 299 (690)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHH
T ss_pred CCcEEEEecCCCHHHHHHHHHHHHh---cCCCCEEEEEEeecccccCcccCcccccCCCCCHHHHHHH
Confidence 9999999 99999999998887764 2589999999999999998665544332 34555544
|
| >3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=252.65 Aligned_cols=194 Identities=23% Similarity=0.225 Sum_probs=152.2
Q ss_pred CCcEEEc--cccc---hHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCcccccccccCccHHHHHHHHH
Q 016909 86 NDDFVVP--QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYA 158 (380)
Q Consensus 86 ~~D~v~~--~yR~---~~~~l~~G~-~~~~~l~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~~p~AvG~A~A 158 (380)
+.|.++. .|-+ .+++...|+ ...+-|..|+. .|+..++|+... .+++..++|++|+++|+|+|+|+|
T Consensus 58 ~rDrfvls~GH~s~~lYa~l~l~G~~~~~~~l~~~r~------~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA 131 (663)
T 3kom_A 58 NRDRFVLSNGHGSMLLYSLLHLTGYDLSIEDIKNFRQ------LHSKTPGHPEYGYTPGVETTTGPLGQGVANAVGMALG 131 (663)
T ss_dssp TSCEEEECSSSCHHHHHHHHHHHTCSCCHHHHTTTTS------TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHH
T ss_pred CCCeEEEeCCcccHHHHHHHHHhCCCCCHHHHHhhcc------CCCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHh
Confidence 3577664 3666 344556776 44455666664 356667887643 578888999999999999999999
Q ss_pred hhhcCC----------CceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhc
Q 016909 159 LKMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 159 ~k~~~~----------~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~ 227 (380)
.|+.+. +++|||++|||++++|++||+|++|++++|| +|+|++||+|++++++.... .+++.+++++|
T Consensus 132 ~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~~~i~~~~~~~~-~~d~~~~~~a~ 210 (663)
T 3kom_A 132 EKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNISIDGDTKGWF-SDNTPERFRAY 210 (663)
T ss_dssp HHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC-----CGGGTC-CCCHHHHHHHT
T ss_pred HHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCCcccccchhhhc-chhHHHHHHHC
Confidence 987653 7899999999999999999999999999996 99999999999999887654 57899999999
Q ss_pred CeeEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCC----ChhHHHH
Q 016909 228 GVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYR----PVDEIEW 289 (380)
Q Consensus 228 G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr----~~~e~~~ 289 (380)
||+++ .|||||++++.+++++|.+. .++|+||+++|+|.+||+...++..+. +++|++.
T Consensus 211 G~~~~~~vdG~d~~~l~~al~~A~~~---~~~P~lI~~~T~kg~G~~~~e~~~~~Hg~~l~~e~~~~ 274 (663)
T 3kom_A 211 GWHVIENVDGHDFVAIEKAINEAHSQ---QQKPTLICCKTVIGFGSPEKAGTASVHGSPLSDQERAS 274 (663)
T ss_dssp TCEEEEEEETTCHHHHHHHHHHHHHC---SSSCEEEEEECCTTTTCTTTTTCSSTTSSCCCHHHHHH
T ss_pred CCeEEEEEcCCCHHHHHHHHHHHHhc---CCCCEEEEEecccccccCCCCCCccccCCCCCHHHHHH
Confidence 99999 89999999999999887642 589999999999999998765443332 4556554
|
| >2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-26 Score=246.95 Aligned_cols=248 Identities=16% Similarity=0.168 Sum_probs=180.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCcccccccchhHHHHHHHHhcCC------CCcEEEcc-ccc---hH
Q 016909 34 SEGVAIKMYNDMVTLQTMDTIFYEAQR-----QGRISFYLTTSGEEAINIASAAAIK------NDDFVVPQ-YRE---PG 98 (380)
Q Consensus 34 ~~~~l~~~y~~M~~~R~~e~~~~~~~~-----~g~i~~~~~~~GqEa~~~~~~~~l~------~~D~v~~~-yR~---~~ 98 (380)
.+.++.+-+..-+|...++..... .+ .|.++...+.. |...+.....|+ +.|+|+.. |-+ .+
T Consensus 73 ~d~~l~~~la~~iR~~~i~~v~~a-~~~~~~~gGH~gs~ls~a--el~~~l~~~~~~~~~~~~~~D~V~~~GH~sp~~Ya 149 (886)
T 2qtc_A 73 GNLELERRIRSAIRWNAIMTVLRA-SKKDLELGGHMASFQSSA--TIYDVCFNHFFRARNEQDGGDLVYFQGHISPGVYA 149 (886)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH-HHTCSCCCCCSHHHHHHH--HHHHHHHHHTCCCCCSSSCCCEEECCGGGHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCccCcCCcHHHH--HHHHHHHHHhcCCCCCCCCCCEEEEcchhHHHHHH
Confidence 344555344444444444433321 22 35444332222 444444445566 46877764 666 45
Q ss_pred HHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCC-CCC-cccccccccCccHHHHHHHHHhhh-------cCCCceeE
Q 016909 99 VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSN-KHN-YFTVSSTIATQLPHAVGAAYALKM-------DRKDACAV 169 (380)
Q Consensus 99 ~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~-~~~-~~~~~g~lG~~~p~AvG~A~A~k~-------~~~~~~vv 169 (380)
+++..|...++-|..|+... .+.++++|+... .++ ....+|++|.+++.|+|+|+|.|+ ++.+++|+
T Consensus 150 ~~~l~Gr~~~e~l~~fRq~~----~~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~ 225 (886)
T 2qtc_A 150 RAFLEGRLTQEQLDNFRQEV----HGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVY 225 (886)
T ss_dssp HHHHTTSSCHHHHTTBTCCT----TSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEE
T ss_pred HHHHhCCCCHHHHHhccCCC----CCCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhcccccccCCCCEEE
Confidence 67788976666677776531 145677777643 344 777899999999999999999998 77899999
Q ss_pred EEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccc-cCCcCHHHHHhhcCeeEEEE-------------
Q 016909 170 TYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQ-FRSDGAVVKGRAYGVRSIRV------------- 234 (380)
Q Consensus 170 ~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~-~~~~~~~~~a~a~G~~~~~V------------- 234 (380)
|++|||++++|++|||||+|+.++| |+||||+||++++++++... ....++.++++++||++++|
T Consensus 226 aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~~~v~~~~~~~~~l~~~~~~~G~~~~~v~~g~~~~~ll~~~ 305 (886)
T 2qtc_A 226 AFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKD 305 (886)
T ss_dssp EEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEECBCTTHHHHHHHC
T ss_pred EEECCccccccchHHHHHHHHHcCCCcEEEEEECCCcccCCCccccccccHHHHHHHHhCCCCEEEEecchhHHHHHccC
Confidence 9999999999999999999999999 69999999999999987753 23467899999999999998
Q ss_pred --------------------------------------------------------eCCCHHHHHHHHHHHHHHhhccCC
Q 016909 235 --------------------------------------------------------DGNDALAIYSAVHAAREMAIGEGR 258 (380)
Q Consensus 235 --------------------------------------------------------dG~D~~av~~a~~~A~~~ar~~~g 258 (380)
||||+.+|++|+++|.++ .++
T Consensus 306 ~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l~~dGhD~~~l~~a~~~A~~~---~~~ 382 (886)
T 2qtc_A 306 TSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQET---KGK 382 (886)
T ss_dssp SSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTCCBGGGCHHHHHHHHHHHHHC---CSS
T ss_pred CchHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhhcccCCCCHHHHHHHHHHHHHc---CCC
Confidence 699999999999999874 469
Q ss_pred cEEEEEEeecCCCCCC--CCCCC----CCCChhHHHHHH
Q 016909 259 PILIEALTYRVGHHTT--SDDST----KYRPVDEIEWWR 291 (380)
Q Consensus 259 P~lIe~~t~R~~gHs~--~Dd~~----~Yr~~~e~~~~~ 291 (380)
|++|+++|++.+||+. .++.. .|++.++++.|+
T Consensus 383 PtlI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r 421 (886)
T 2qtc_A 383 ATVILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRHIR 421 (886)
T ss_dssp CEEEEEECCTTTTCTTCC-------------CHHHHHHH
T ss_pred CEEEEEeeeeccccchhhcCCccccCCCCCCHHHHHHHH
Confidence 9999999999999973 22222 278888888886
|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.8e-24 Score=223.82 Aligned_cols=164 Identities=17% Similarity=0.212 Sum_probs=129.2
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceee----------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST---------- 209 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~---------- 209 (380)
..|++|.++|.|+|+++|. ++++|||++|||+++++ +++|++|+++++|+++||.||+ |++..
T Consensus 418 ~~g~~G~~l~~A~Gaala~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~~~~~~~~~~~~~~~ 491 (603)
T 4feg_A 418 LFATMGVGIPGAIAAKLNY----PERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQND 491 (603)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHCSSC
T ss_pred ccccccchhHHHhhHHHhC----CCCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCchHHHHHHHHHhcCCC
Confidence 3589999999999999985 47899999999999876 6779999999999887776664 88622
Q ss_pred ecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe---ecCCCCCCCCCCCCCCChh-
Q 016909 210 PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT---YRVGHHTTSDDSTKYRPVD- 285 (380)
Q Consensus 210 ~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t---~R~~gHs~~Dd~~~Yr~~~- 285 (380)
.........++.+++++||+++++|+ +++++.+++++|++ .+.+||+|||+.| +|+.+|.+.|++..||..+
T Consensus 492 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~--~~~~gP~lIev~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (603)
T 4feg_A 492 FIGVEFNDIDFSKIADGVHMQAFRVN--KIEQLPDVFEQAKA--IAQHEPVLIDAVITGDRPLPAEKLRLDSAMSSAADI 567 (603)
T ss_dssp CCSSBCCCCCHHHHHHHTTCEEEEEC--BGGGHHHHHHHHHH--HTTTSCEEEEEECCCCCCCCTTSCCCCTTTSCHHHH
T ss_pred cccCcCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHH--hcCCCcEEEEEEeCCCCCCCcccchhhhhhhhHHHH
Confidence 11122345689999999999999998 67788888877762 1468999999999 6667899999999998665
Q ss_pred -HHHHHHhCCChHHHHHHHHHHCCCCCHHHH
Q 016909 286 -EIEWWRTTQDPVTRFRKWIESNGWWNGDIE 315 (380)
Q Consensus 286 -e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~ 315 (380)
+..+|+ ++||+.+++++|.++|+|++++.
T Consensus 568 ~~~~~~~-~~d~~~~~~~~l~~~g~~~~~~~ 597 (603)
T 4feg_A 568 EAFKQRY-EAQDLQPLSTYLKQFGLDDLQHQ 597 (603)
T ss_dssp HHHHHHH-TCTTCCCHHHHHHHTTC------
T ss_pred HHHHhhC-CcccCCchHHHHHHcCCchhhhh
Confidence 566666 59999999999999999998754
|
| >3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=7.1e-19 Score=187.73 Aligned_cols=140 Identities=20% Similarity=0.211 Sum_probs=124.7
Q ss_pred CccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcch---HHHHHHHHHHcCC-CEEEEEEc
Q 016909 127 MPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD---FHAALNFSAVTEA-PVIFICRN 202 (380)
Q Consensus 127 ~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~---~~Eal~~A~~~~L-pvi~vv~N 202 (380)
+++|+....+|+...+|+||+|+++|+|+|+ .+++..|+|++|||+.++|. .||+.+++..++| +||.|+++
T Consensus 159 ~pgHp~~~tpGve~~tG~LGqGls~AvG~A~----~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~ 234 (845)
T 3ahc_A 159 IPSHFAPETPGSIHEGGELGYALSHAYGAVM----NNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHL 234 (845)
T ss_dssp BCSSCCTTSTTCSCCCSSTTCHHHHHHHHHT----TCTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEE
T ss_pred CCCCCCCCCCCeecCCCCccchHhHHhhhhh----cCCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEEC
Confidence 8999976678999999999999999999995 46788999999999999999 9999999999999 89999999
Q ss_pred CCcceeeecccc-cCCcCHHHHHhhcCeeEE-EEeC-C--CHHHHHHHHHHHHH-----------Hhhc--cCCc--EEE
Q 016909 203 NGWAISTPISDQ-FRSDGAVVKGRAYGVRSI-RVDG-N--DALAIYSAVHAARE-----------MAIG--EGRP--ILI 262 (380)
Q Consensus 203 N~~~i~~~~~~~-~~~~~~~~~a~a~G~~~~-~VdG-~--D~~av~~a~~~A~~-----------~ar~--~~gP--~lI 262 (380)
|+++|+.++... .+.+++.+++++|||.++ .||| | |+.++..++.+|++ .+|+ .++| ++|
T Consensus 235 N~~~i~g~t~l~~~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~I 314 (845)
T 3ahc_A 235 NGYKIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPML 314 (845)
T ss_dssp CSBSSSSBCHHHHSCHHHHHHHHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEE
T ss_pred CCCcCCCCccccccCcHHHHHHHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEE
Confidence 999999998743 456789999999999999 9999 9 99999998876663 2444 3689 999
Q ss_pred EEEeecCC
Q 016909 263 EALTYRVG 270 (380)
Q Consensus 263 e~~t~R~~ 270 (380)
.++|...+
T Consensus 315 i~rT~kG~ 322 (845)
T 3ahc_A 315 IFRTPKGW 322 (845)
T ss_dssp EEECCTTT
T ss_pred EEECcccC
Confidence 99999998
|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.4e-17 Score=167.97 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=101.0
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeecccc-----
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPISDQ----- 214 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~~~~----- 214 (380)
..|+||+++|.|+|+|+|. ++++|||++|||+++++ +++|++|+++++|+++|| +||+|++.......
T Consensus 411 ~~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~~~~~ 484 (590)
T 1v5e_A 411 LFATMGIAIPGGLGAKNTY----PDRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKNL 484 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSSCCSC
T ss_pred CCCcccChHHHHHHHHHhC----CCCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHhcCCC
Confidence 4699999999999999995 47889999999999876 588999999999966666 55578887543211
Q ss_pred ----cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016909 215 ----FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 215 ----~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 270 (380)
....++.+++++||+++++|+ +++++.+++++|++.+|. ++|+|||+.|+|..
T Consensus 485 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~-~gp~liev~~~~~~ 541 (590)
T 1v5e_A 485 FGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMDRVMAEAVAANKA-GHTVVIDCKITQDR 541 (590)
T ss_dssp CCCCCCCCCHHHHHHHTTSEEEEEC--BHHHHHHHHHHHHHHHHT-TCCEEEEEECCSCC
T ss_pred ccccCCCCCHHHHHHHcCCEEEEEC--CHHHHHHHHHHHHHhcCC-CCCEEEEEEecccc
Confidence 234689999999999999998 799999999999876554 79999999998754
|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.5e-17 Score=168.69 Aligned_cols=122 Identities=20% Similarity=0.187 Sum_probs=100.3
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc-------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~------- 212 (380)
.+|++|+++|.|+|+|+|. +++.|||++|||+++++ +++|++|+++++|+++||.|| +|++.....
T Consensus 440 ~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 513 (616)
T 2pan_A 440 QAGPLGWTIPAALGVCAAD----PKRNVVAISGDFDFQFL--IEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDY 513 (616)
T ss_dssp TTCCTTCHHHHHHHHHHHC----TTCEEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHGGGGTCCC
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchhhhCC--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCc
Confidence 4689999999999999995 47899999999999875 578999999999976655555 588753211
Q ss_pred -------c--ccC----CcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016909 213 -------D--QFR----SDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 213 -------~--~~~----~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 270 (380)
. ... ..++.+++++||+++++|+ +++++.+++++|++++|+.++|+|||+.|.|..
T Consensus 514 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~lIev~~~~~~ 582 (616)
T 2pan_A 514 CVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQYRVPVVVEVILERVT 582 (616)
T ss_dssp SCBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEEC--SGGGHHHHHHHHHHHHHHHCSCEEEEEEBCSCC
T ss_pred cccccccccccccCCCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecccc
Confidence 0 111 2689999999999999998 788999999999987776789999999998865
|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-16 Score=164.22 Aligned_cols=117 Identities=18% Similarity=0.239 Sum_probs=97.1
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeecc-------c
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS-------D 213 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~~-------~ 213 (380)
.|++|+++|.|+|+|+|.| +++++|||++|||+++++ +++|++|+++++|+++|| +||+|++..... .
T Consensus 418 ~g~~G~~l~~AiGaa~a~~--~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~ 493 (563)
T 2uz1_A 418 LGSMGVGFGTALGAQVADL--EAGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVGPNR 493 (563)
T ss_dssp TCCTTTHHHHHHHHHHHHH--HHTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCTTC
T ss_pred CccccChHHHHHHHHHHhh--CCCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCc
Confidence 5899999999999999986 567899999999999876 468999999999966655 555788765421 1
Q ss_pred c----cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 214 Q----FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ~----~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
. ....++.+++++||+++++|+ +++++.+++++|++ .++|+|||+.|++
T Consensus 494 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~ 546 (563)
T 2uz1_A 494 VTGTRLENGSYHGVAAAFGADGYHVD--SVESFSAALAQALA----HNRPACINVAVAL 546 (563)
T ss_dssp CCSCBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----SSSCEEEEEECCS
T ss_pred ccCCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHH----CCCCEEEEEEecc
Confidence 1 134689999999999999997 89999999988875 5899999999964
|
| >2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.8e-17 Score=168.00 Aligned_cols=121 Identities=14% Similarity=0.163 Sum_probs=98.0
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeecc------c
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS------D 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~~------~ 213 (380)
..|+||+++|.|+|+|+|.+.++.+++|||++|||+++++ +++|++|++++||+++|| +||+|++..... .
T Consensus 411 ~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 488 (563)
T 2vk8_A 411 LWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLT--VQEISTMIRWGLKPYLFVLNNDGYTIQKLIHGPKAQYN 488 (563)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGG
T ss_pred chhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhcc--HHHHHHHHHcCCCcEEEEEECCcchhhhhhhCCCCCcc
Confidence 4689999999999999999888888999999999999864 678999999999966666 555688754321 1
Q ss_pred ccCCcCHHHHHhhcCee---EEEEeCCCHHHHHHHHH-HHHHHhhccCCcEEEEEEeec
Q 016909 214 QFRSDGAVVKGRAYGVR---SIRVDGNDALAIYSAVH-AAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ~~~~~~~~~~a~a~G~~---~~~VdG~D~~av~~a~~-~A~~~ar~~~gP~lIe~~t~R 268 (380)
.....++.+++++||++ +++|+ +++++.++++ ++++ ..++|+|||++|++
T Consensus 489 ~~~~~d~~~~a~a~G~~~~~~~~v~--~~~el~~al~~~a~~---~~~~p~liev~~~~ 542 (563)
T 2vk8_A 489 EIQGWDHLSLLPTFGAKDYETHRVA--TTGEWDKLTQDKSFN---DNSKIRMIEVMLPV 542 (563)
T ss_dssp CCCCCCGGGHHHHTTCSSEEEEEEC--BHHHHHHHHTCTTTT---SCSSEEEEEEECCT
T ss_pred cCCCCCHHHHHHHhCCCCCcEEEec--CHHHHHHHHHHHHHh---CCCCcEEEEEEeCc
Confidence 12346899999999999 99999 7888888887 6553 23579999999965
|
| >1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-16 Score=162.39 Aligned_cols=114 Identities=23% Similarity=0.337 Sum_probs=94.3
Q ss_pred ccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeeccc--------
Q 016909 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD-------- 213 (380)
Q Consensus 143 g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~~-------- 213 (380)
|+||+++|.|+|+|+|. +++.|||++|||+++++ +++|++|+++++|+++||.|| +|++.+....
T Consensus 401 g~~G~~l~~A~G~a~a~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~ 474 (528)
T 1q6z_A 401 GGLGFALPAAIGVQLAE----PERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVP 474 (528)
T ss_dssp CCTTSHHHHHHHHHHHC----TTSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCCSCC
T ss_pred ccccchHHHHHHHHHhC----CCCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchHhHHHHHHhcCCCcc
Confidence 99999999999999995 46789999999999987 789999999999977777655 5888654211
Q ss_pred --ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 214 --QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 --~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.....++.+++++||+++++|+ +.+++.++++++++ .++|+|||+.|.|
T Consensus 475 ~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~ 525 (528)
T 1q6z_A 475 GLDVPGIDFRALAKGYGVQALKAD--NLEQLKGSLQEALS----AKGPVLIEVSTVS 525 (528)
T ss_dssp SCBCCCCCHHHHHHHHTCEEEEES--SHHHHHHHHHHHHT----CSSCEEEEEEBCC
T ss_pred cCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHH----CCCcEEEEEEecC
Confidence 1134689999999999999998 67788777776654 6899999999965
|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-16 Score=163.99 Aligned_cols=116 Identities=20% Similarity=0.268 Sum_probs=95.8
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc-------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~------- 212 (380)
..|+||+++|.|+|+|+|. ++++|||++|||+++++ +++|++|.++++|+++||.|| +|++.....
T Consensus 418 g~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 491 (566)
T 1ozh_A 418 GQQTMGVALPWAIGAWLVN----PERKVVSVSGDGGFLQS--SMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQRL 491 (566)
T ss_dssp TTCCTTCHHHHHHHHHHHS----TTSEEEEEEEHHHHHHH--TTHHHHHHHHTCCEEEEEEECSBCHHHHHHHHHHHSSC
T ss_pred CcccccchHHHHHHHHHhC----CCCCEEEEEcChHHhcc--HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCC
Confidence 3689999999999999995 47899999999999874 577999999999977666555 688765321
Q ss_pred --cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
......++.+++++||+++++|+ +++++.+++++|++ .++|+|||+.|+|
T Consensus 492 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~ 543 (566)
T 1ozh_A 492 SGVEFGPMDFKAYAESFGAKGFAVE--SAEALEPTLRAAMD----VDGPAVVAIPVDY 543 (566)
T ss_dssp CSCBCCCCCHHHHHHTTTSEEEECC--SGGGHHHHHHHHHH----SSSCEEEEEEBCC
T ss_pred ccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 12334689999999999999998 78888888888875 5899999999976
|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.9e-16 Score=162.71 Aligned_cols=116 Identities=25% Similarity=0.319 Sum_probs=95.8
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeec--------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~-------- 211 (380)
..|++|+++|.|+|+|+|. ++++|||++|||+++++ +++|++|+++++|+++|| +||+|++....
T Consensus 434 g~g~mG~~l~~AiGaa~a~----~~~~vv~i~GDG~~~~~--~~~L~~a~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 507 (573)
T 2iht_A 434 GCSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRS 507 (573)
T ss_dssp SSCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHHSSC
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEccHHHHhH--HHHHHHHHHhCCCeEEEEEECCcchhhHHHHHHhcCCC
Confidence 3689999999999999995 47889999999999875 578999999999966555 55568876642
Q ss_pred -c--cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 -S--DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 -~--~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
. ......++.+++++||+++++|+ +.+++.+++++|++ .++|+|||+.|.|
T Consensus 508 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~ 561 (573)
T 2iht_A 508 HDPAVKFGGVDFVALAEANGVDATRAT--NREELLAALRKGAE----LGRPFLIEVPVNY 561 (573)
T ss_dssp CGGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHHHHHT----SSSCEEEEEEBCC
T ss_pred cCccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEECCC
Confidence 1 22334689999999999999997 88898888887764 5899999999988
|
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.4e-16 Score=164.05 Aligned_cols=118 Identities=18% Similarity=0.209 Sum_probs=96.2
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeecc-------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~~------- 212 (380)
..|++|+++|.|+|+|+|. +++.|||++|||+|+++ +++|++|+++++|+++|| +||+|++.....
T Consensus 511 ~~G~mG~~lpaAiGaalA~----p~~~Vv~i~GDGsf~~~--~~eL~ta~~~~l~v~ivV~NN~~~g~~~~~~~~~~~~~ 584 (677)
T 1t9b_A 511 GLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFNMT--LTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHR 584 (677)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTTC
T ss_pred CcchhhchHHHHHHHHHhC----CCCeEEEEEeehHHhcc--HHHHHHHHHhCCCeEEEEEeCCCchhhhhhhhhhcCCC
Confidence 3589999999999999995 67899999999999864 566999999999865555 555688754321
Q ss_pred ---cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016909 213 ---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 213 ---~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 270 (380)
......++.+++++||+++++|+ +++++.+++++|++ .++|+|||+.|.|..
T Consensus 585 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~~~ 639 (677)
T 1t9b_A 585 YSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFVS----TKGPVLLEVEVDKKV 639 (677)
T ss_dssp CCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----CSSCEEEEEEBCSSC
T ss_pred cccCcCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHH----CCCcEEEEEEecCCc
Confidence 11235689999999999999997 89999999988875 579999999999864
|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.5e-16 Score=163.57 Aligned_cols=118 Identities=21% Similarity=0.275 Sum_probs=97.0
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc--------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~-------- 212 (380)
.|++|+++|.|+|+|+|. +++.|||++|||+++++ +++|++|+++++|+++||.|| +|++.....
T Consensus 423 ~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~ 496 (589)
T 2pgn_A 423 EGILGCGFPMALGAQLAE----PNSRVFLGTGDGALYYH--FNEFRVAVEHKLPVITMVFTNESYGANWTLMNHQFGQNN 496 (589)
T ss_dssp TCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHHSSCC
T ss_pred cchhhhHHHHHHHHHHhC----CCCcEEEEEeeHHHHhh--HHHHHHHHHhCCCeEEEEEECCCcccchHHHHhhcCCCc
Confidence 589999999999999995 47889999999999875 589999999999966655555 588765432
Q ss_pred -cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCC
Q 016909 213 -DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 271 (380)
Q Consensus 213 -~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~g 271 (380)
......++.+++++||+++++|+ +++++.+++++|++ .++|+|||+.|+|..+
T Consensus 497 ~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~~~~ 550 (589)
T 2pgn_A 497 WTEFMNPDWVGIAKAFGAYGESVR--ETGDIAGALQRAID----SGKPALIEIPVSKTQG 550 (589)
T ss_dssp SCBCCCCCHHHHHHHHTCEEEECT--TTCCHHHHHHHHHH----HCSCEEEEEECCSSSS
T ss_pred cccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCCC
Confidence 22335789999999999999998 67788888888875 4799999999987643
|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-15 Score=157.81 Aligned_cols=118 Identities=20% Similarity=0.266 Sum_probs=93.8
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEE-EEcCCcceeeecc-------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI-CRNNGWAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~v-v~NN~~~i~~~~~------- 212 (380)
..|++|.++|.|+|+++|. +++.|||++|||+++++ .++|++|.++++|+++| ++||+|++.....
T Consensus 404 ~~g~mG~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~~~~~~~~ 477 (549)
T 3eya_A 404 NHGSMANAMPQALGAQATE----PERQVVAMCGDGGFSML--MGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAGGYLT 477 (549)
T ss_dssp TTCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCCCC-----------
T ss_pred CCchhhhHHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHhcCCCC
Confidence 4589999999999999985 57889999999999765 57899999999986555 4555687643211
Q ss_pred --cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016909 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 270 (380)
......++.+++++||+++++|+ +++++.++++++++ .+||+|||+.|.+..
T Consensus 478 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~~~ 531 (549)
T 3eya_A 478 DGTELHDTNFARIAEACGITGIRVE--KASEVDEALQRAFS----IDGPVLVDVVVAKEE 531 (549)
T ss_dssp -CCBCCCCCHHHHHHHTTSEEEEEC--SGGGHHHHHHHHHH----SSSCEEEEEEBCCCC
T ss_pred cCCcCCCCCHHHHHHHcCCcEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecccc
Confidence 11234689999999999999997 78888888888765 589999999997753
|
| >2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-15 Score=158.94 Aligned_cols=117 Identities=20% Similarity=0.246 Sum_probs=94.4
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeecc------c
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS------D 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~~------~ 213 (380)
..|+||+++|.|+|+|+|. ++++|||++|||+++++ +++|++|+++++|+++|| +||+|++..... .
T Consensus 423 ~~g~mG~~l~~A~Gaala~----~~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 496 (570)
T 2vbf_A 423 LWGSIGYTFPAALGSQIAD----KESRHLLFIGDGSLQLT--VQELGLSIREKLNPICFIINNDGYTVEREIHGPTQSYN 496 (570)
T ss_dssp TTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGG
T ss_pred cchhhhhhHHHHHHHHHhC----CCCcEEEEEcchhhhcC--HHHHHHHHHcCCCCEEEEEECCchHHHHHHhccCCCcc
Confidence 4799999999999999995 47899999999999874 567999999999855554 566798765322 1
Q ss_pred ccCCcCHHHHHhhcCee-----EEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 214 QFRSDGAVVKGRAYGVR-----SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ~~~~~~~~~~a~a~G~~-----~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.....++.+++++||++ +++|+ +++++.++++++. ++.++|+|||+.|+|
T Consensus 497 ~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~---~~~~~p~liev~~~~ 551 (570)
T 2vbf_A 497 DIPMWNYSKLPETFGATEDRVVSKIVR--TENEFVSVMKEAQ---ADVNRMYWIELVLEK 551 (570)
T ss_dssp CCCCCCGGGHHHHTTCCTTTEEEEEEC--BHHHHHHHHHHHH---HCTTSEEEEEEECCT
T ss_pred CCCCCCHHHHHHHcCCCcCCcceEEec--CHHHHHHHHHHHH---hcCCCcEEEEEEcCc
Confidence 12346899999999998 88997 7889888888752 246899999999976
|
| >1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-15 Score=157.37 Aligned_cols=119 Identities=21% Similarity=0.224 Sum_probs=96.7
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeecc-------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~~------- 212 (380)
..|++|+++|.|+|+|+|. +++.|||++|||+++++ +++|++|+++++|+++|| +||+|++.....
T Consensus 424 ~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 497 (590)
T 1ybh_A 424 GLGAMGFGLPAAIGASVAN----PDAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQHLGMVMQWEDRFYKAN 497 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSBCHHHHHHHHHHSTTC
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCcEEEEEECCcchHHHHHHHHhcCCc
Confidence 3589999999999999995 47899999999999875 568999999999966655 555788754211
Q ss_pred ---cc--c------CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCC
Q 016909 213 ---DQ--F------RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 271 (380)
Q Consensus 213 ---~~--~------~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~g 271 (380)
.. . ...++.+++++||+++++|+ +++++.+++++|++ .++|+|||+.|.|...
T Consensus 498 ~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~~~~ 561 (590)
T 1ybh_A 498 RAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQTMLD----TPGPYLLDVICPHQEH 561 (590)
T ss_dssp CCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHHHHH----SSSCEEEEEECCTTCC
T ss_pred cccccccccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCcc
Confidence 00 1 14589999999999999998 88999998888875 4799999999998653
|
| >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-15 Score=158.87 Aligned_cols=117 Identities=22% Similarity=0.268 Sum_probs=95.9
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEE-EEEcCCcceeeeccc----cc
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPISD----QF 215 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~-vv~NN~~~i~~~~~~----~~ 215 (380)
..|+||+++|.|+|+|+|. ++++|||++|||+++++ +++|++|+++++|+++ |++||+|++...... ..
T Consensus 407 ~~g~mG~~l~~A~G~ala~----~~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 480 (566)
T 2vbi_A 407 QWGHIGWSVPSAFGNAMGS----QDRQHVVMVGDGSFQLT--AQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGPYNYI 480 (566)
T ss_dssp TTCCTTTHHHHHHHHHHTC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCC
T ss_pred cccchhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCcceEEEeeccCCccCC
Confidence 4689999999999999985 57899999999999864 5679999999998555 556668988765431 22
Q ss_pred CCcCHHHHHhhcCe-----eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 216 RSDGAVVKGRAYGV-----RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 216 ~~~~~~~~a~a~G~-----~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
...++.+++++||+ ++++|+ +++++.++++++++. .++|+|||+.|.|
T Consensus 481 ~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~~~---~~gp~liev~~~~ 533 (566)
T 2vbi_A 481 KNWDYAGLMEVFNAGEGHGLGLKAT--TPKELTEAIARAKAN---TRGPTLIECQIDR 533 (566)
T ss_dssp CCCCTTTHHHHHHTTTCCCEEEEEC--SHHHHHHHHHHHHHC---CSSCEEEEEECCT
T ss_pred CCCCHHHHHHHcCCCCCCccEEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCc
Confidence 34689999999999 999998 889999998888752 2799999999976
|
| >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-15 Score=158.57 Aligned_cols=115 Identities=19% Similarity=0.198 Sum_probs=94.5
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeecc-----ccc
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS-----DQF 215 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~~-----~~~ 215 (380)
.|+||+++|.|+|+|+|. ++++|||++|||+++ +.+++|++|+++++|+++|| +||+|++..... ...
T Consensus 421 ~g~mG~~l~~A~G~ala~----~~~~vv~i~GDG~~~--~~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~ 494 (565)
T 2nxw_A 421 YAGMGFGVPAGIGAQCVS----GGKRILTVVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLRTFQPESAFNDL 494 (565)
T ss_dssp TCCTTCHHHHHHHHHHHT----TTCCEEEEEEHHHHH--HHGGGGGGHHHHTCCCEEEEEECSBCHHHHHHCTTCGGGBC
T ss_pred cccccccchHHHHHHHhC----CCCcEEEEEechHHH--hhHHHHHHHHHhCCCCEEEEEECCCCcEEeeecccCCCCcC
Confidence 589999999999999995 478899999999998 56788999999999966555 555688754321 123
Q ss_pred CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcE-EEEEEeec
Q 016909 216 RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPI-LIEALTYR 268 (380)
Q Consensus 216 ~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~-lIe~~t~R 268 (380)
...++.+++++||+++++|+ +++++.++++++++ .++|+ |||+.|+|
T Consensus 495 ~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~~liev~~~~ 542 (565)
T 2nxw_A 495 DDWRFADMAAGMGGDGVRVR--TRAELKAALDKAFA----TRGRFQLIEAMIPR 542 (565)
T ss_dssp CCCCHHHHTGGGTSEEEEEC--BHHHHHHHHHHHHH----CCSSCEEEEEECCT
T ss_pred CCCCHHHHHHHcCCCEEEeC--CHHHHHHHHHHHHh----cCCCeEEEEEEccc
Confidence 45689999999999999998 78999999888875 46898 99999965
|
| >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-15 Score=156.62 Aligned_cols=117 Identities=20% Similarity=0.239 Sum_probs=96.1
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEE-EEEcCCcceeeeccc----cc
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPISD----QF 215 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~-vv~NN~~~i~~~~~~----~~ 215 (380)
..|+||+++|.|+|+|+|. ++++|||++|||+++++ +++|++|.++++|+++ |++||+|++...... ..
T Consensus 411 ~~g~~G~~l~~A~G~ala~----~~~~vv~i~GDGs~~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 484 (568)
T 2wvg_A 411 QWGHIGWSVPAAFGYAVGA----PERRNILMVGDGSFQLT--AQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNI 484 (568)
T ss_dssp TTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCC
T ss_pred CcchhhhHHHHHHHHHHhC----CCCcEEEEEcChhHhcc--HHHHHHHHHcCCCcEEEEEECCcceEeeeeccCCCcCC
Confidence 4689999999999999995 57899999999999863 6679999999998655 556677988765431 22
Q ss_pred CCcCHHHHHhhcCe---------eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 216 RSDGAVVKGRAYGV---------RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 216 ~~~~~~~~a~a~G~---------~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
...++.+++++||+ ++++|+ +.+++.++++++++. .++|+|||+.|+|
T Consensus 485 ~~~d~~~~a~a~G~~~~~~~~~~~~~~v~--~~~el~~al~~a~~~---~~gp~liev~~~~ 541 (568)
T 2wvg_A 485 KNWDYAGLMEVFNGNGGYDSGAGKGLKAK--TGGELAEAIKVALAN---TDGPTLIECFIGR 541 (568)
T ss_dssp CCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHHHHHHHHHHHHHC---CSSCEEEEEECCT
T ss_pred CCCCHHHHHHHhCCCcccccCCcceEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEcCc
Confidence 34689999999999 999997 789999999888753 2799999999976
|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-15 Score=154.88 Aligned_cols=117 Identities=18% Similarity=0.149 Sum_probs=95.6
Q ss_pred cccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-c-ceeeec---cc-
Q 016909 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-W-AISTPI---SD- 213 (380)
Q Consensus 140 ~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~-~i~~~~---~~- 213 (380)
+..|++|+++|.|+|+|+| ++++|||++|||+|++. .++|++|+++++|+++||.||+ | ++.... ..
T Consensus 423 g~~g~~G~~l~~AiGaala-----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~ 495 (568)
T 2c31_A 423 GTWGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFGFS--GMELETICRYNLPVTVIIMNNGGIYKGNEADPQPGVI 495 (568)
T ss_dssp TTTTCSSCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEESSBSSCSCCCCSBTTBC
T ss_pred CCCccccccHHHHHHHHhC-----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHhhcCCc
Confidence 3468999999999999998 56789999999999764 5779999999999888887776 3 443211 00
Q ss_pred ---ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016909 214 ---QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 214 ---~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 269 (380)
.....++.+++++||+++++|+ +++++.++++++++ .++|+|||+.|.|.
T Consensus 496 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~ 548 (568)
T 2c31_A 496 SCTRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAVA----SGKPCLINAMIDPD 548 (568)
T ss_dssp CTTBCCCCCHHHHHHTTTCEEEEES--SHHHHHHHHHHHHH----HTSCEEEEEEBCTT
T ss_pred ccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeccc
Confidence 0345689999999999999998 89999999998875 47999999999874
|
| >1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-15 Score=158.64 Aligned_cols=116 Identities=19% Similarity=0.211 Sum_probs=93.5
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeecc------c
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS------D 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~~------~ 213 (380)
..|+||+++|.|+|+|+|. ++++|||++|||+++++ +++|.+|.++++|+++|| +||+|++..... .
T Consensus 406 ~~g~mG~~l~~A~G~a~a~----~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 479 (552)
T 1ovm_A 406 LWGSIGYTLAAAFGAQTAC----PNRRVIVLTGDGAAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYN 479 (552)
T ss_dssp TTCCTTHHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--TTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGG
T ss_pred hhHhhhhHHHHHHHHHHhC----CCCcEEEEECchHHHhH--HHHHHHHHHhCCCCEEEEEECCCCeEEEeeccCCCCcc
Confidence 4689999999999999995 47889999999999754 677999999999866655 555698864321 1
Q ss_pred ccCCcCHHHHHhhcCe----eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 214 QFRSDGAVVKGRAYGV----RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ~~~~~~~~~~a~a~G~----~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.....++.+++++||+ ++++|+ +++++.+++++++ +.++|+|||+.|.+
T Consensus 480 ~~~~~d~~~~a~a~G~~~~~~~~~v~--~~~~l~~al~~a~----~~~gp~liev~~~~ 532 (552)
T 1ovm_A 480 DIALWNWTHIPQALSLDPQSECWRVS--EAEQLADVLEKVA----HHERLSLIEVMLPK 532 (552)
T ss_dssp CCCCCCGGGSTTTSCSSCCEEEEEEC--BHHHHHHHHHHHT----TCSSEEEEEEECCT
T ss_pred cCCCCCHHHHHHHhCCCcCCCEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEcCc
Confidence 1234689999999999 999998 7888888887764 46899999999965
|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=8e-15 Score=152.38 Aligned_cols=118 Identities=14% Similarity=0.089 Sum_probs=95.3
Q ss_pred cccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-c-ceeeec------
Q 016909 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-W-AISTPI------ 211 (380)
Q Consensus 140 ~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~-~i~~~~------ 211 (380)
+..|++|+++|.|+|+++| +++.|||++|||+|++. .++|++|+++++|+++||.||+ | ++....
T Consensus 418 g~~g~~G~~l~~AiGaa~a-----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~ 490 (564)
T 2q28_A 418 GTWGVMGIGMGYAIGASVT-----SGSPVVAIEGDSAFGFS--GMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGA 490 (564)
T ss_dssp TTTTCTTCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEECSBSSCSCCCCTTSSCC
T ss_pred CCCCcccchHHHHHHHhhc-----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHhccCC
Confidence 3468999999999999998 57889999999999764 4779999999999888877776 3 543211
Q ss_pred -cc--ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016909 212 -SD--QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 212 -~~--~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 270 (380)
.. .....++.+++++||+++++|+ +++++.++++++++ .++|+|||+.|.|..
T Consensus 491 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~~ 546 (564)
T 2q28_A 491 PSPTDLLHHARYDKLMDAFRGVGYNVT--TTDELRHALTTGIQ----SRKPTIINVVIDPAA 546 (564)
T ss_dssp CCTTBCCTTCCGGGGGGGGTCEEEEEC--SHHHHHHHHHHHHH----HTSCEEEEEEBCTTS
T ss_pred ccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecccc
Confidence 00 1124689999999999999998 89999999988875 479999999998753
|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.1e-15 Score=155.95 Aligned_cols=114 Identities=18% Similarity=0.058 Sum_probs=90.6
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeeccc-------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPISD------- 213 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~~~------- 213 (380)
.+.+|+++|.|+|+|+|. +++|||++|||+|+++ .++|++|+++++|+++|| +||+|++......
T Consensus 454 ~~~ig~~l~~AiGaala~-----~~~vv~i~GDGsf~~~--~~eL~ta~~~~lp~~ivv~NN~~~~i~~~~~~~q~~~~~ 526 (604)
T 2x7j_A 454 ANGIDGVVSSAMGVCEGT-----KAPVTLVIGDLSFYHD--LNGLLAAKKLGIPLTVILVNNDGGGIFSFLPQASEKTHF 526 (604)
T ss_dssp TCCSSSHHHHHHHHHHHH-----TSCEEEEEEHHHHHHT--GGGGHHHHHHCCCEEEEEEECSSCGGGGGSGGGSCHHHH
T ss_pred cCCcCcHHHHHHHHHhcC-----CCcEEEEEccHHHHhH--HHHHHHhhhcCCCeEEEEEeCCCCcccccCCCCccchhh
Confidence 467899999999999983 6789999999999875 456999999999976655 5557887542210
Q ss_pred -----ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 214 -----QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 -----~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.....|+.+++++||+++++|+ +++++.+++++|+ +.++|+|||+.|.|
T Consensus 527 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~liev~~~~ 580 (604)
T 2x7j_A 527 EDLFGTPTGLDFKHAAALYGGTYSCPA--SWDEFKTAYAPQA----DKPGLHLIEIKTDR 580 (604)
T ss_dssp HHHTTCCCCCCTHHHHHHTTCEEECCS--SHHHHHHHCCCCC----SSCCEEEEEEECCH
T ss_pred HhhccCCCCCCHHHHHHHcCCeEEecC--CHHHHHHHHHHHH----hCCCCEEEEEECCc
Confidence 0124689999999999999998 7888877777665 35899999999854
|
| >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-14 Score=148.92 Aligned_cols=114 Identities=18% Similarity=0.114 Sum_probs=85.8
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec-------c
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-------S 212 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~-------~ 212 (380)
..|++|. +|.|+|+++| ++++|||++|||+|++. .++|++|.++++|+++||.||+ |++.... .
T Consensus 415 ~~g~~G~-l~~A~Gaa~a-----~~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~ 486 (556)
T 3hww_A 415 ASGIDGL-LSTAAGVQRA-----SGKPTLAIVGDLSALYD--LNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERE 486 (556)
T ss_dssp SCCSSSH-HHHHHHHHHH-----HCCCEEEEEEHHHHHHT--GGGHHHHTTCSSCEEEEEEESCC---------------
T ss_pred ccccccH-HHHHHHHHhc-----CCCcEEEEEccHHhhhc--chhhHhhcccCCCcEEEEEECCCCCcccCCCCcchhHH
Confidence 3456666 9999999998 36789999999999754 4569999999999888777776 5654321 1
Q ss_pred ---cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 213 ---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 ---~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
......|+.++|++||+++++|+ +.+++.+++++++ +.+||+|||+.|.|
T Consensus 487 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~----~~~gp~liev~~~~ 539 (556)
T 3hww_A 487 RFYLMPQNVHFEHAAAMFELKYHRPQ--NWQELETAFADAW----RTPTTTVIEMVVND 539 (556)
T ss_dssp --CCCCCCCCSHHHHHHTTCEEECCS--SHHHHHHHHHHHT----TSSSEEEEEEECCS
T ss_pred HhccCCCCCCHHHHHHHcCCcEEecC--CHHHHHHHHHHHH----hCCCCEEEEEECCc
Confidence 11235689999999999999998 7888877777665 46899999999854
|
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.1e-14 Score=147.62 Aligned_cols=111 Identities=16% Similarity=0.061 Sum_probs=79.1
Q ss_pred ccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec---c------cc
Q 016909 145 IATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI---S------DQ 214 (380)
Q Consensus 145 lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~---~------~~ 214 (380)
+|+++|.|+|+|+ ++++|||++|||+|++. .++|++|.++++|+++||.|| +|++.... . ..
T Consensus 438 ~~g~l~~AiGaa~------~~~~vv~i~GDGsf~~~--~~eL~ta~~~~l~~~ivv~NN~~~g~~~~~~~~~~~~~~~~~ 509 (578)
T 3lq1_A 438 IDGVVSSALGASV------VFQPMFLLIGDLSFYHD--MNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESL 509 (578)
T ss_dssp SSSHHHHHHHHTT------TSSSEEEEEEHHHHHHT--GGGGHHHHHTTCCEEEEEECCC--------------------
T ss_pred cccHHHHHHHHhc------CCCCEEEEEchHHHHhh--HHHHHhhccCCCCeEEEEEECCcCccccccccccccchhhhh
Confidence 3446999999863 37899999999999754 567999999999988777766 57765421 0 00
Q ss_pred ---cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016909 215 ---FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 215 ---~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 269 (380)
....|+.++|++||+++++|+ +++++.+++++|++ .+||+|||+.|.|.
T Consensus 510 ~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~~ 561 (578)
T 3lq1_A 510 FGTSTELDFRFAAAFYDADYHEAK--SVDELEEAIDKASY----HKGLDIIEVKTNRH 561 (578)
T ss_dssp -----CCCTHHHHHHTTCEEEECC--SHHHHHHHHHHHTT----SSSEEEEEEC----
T ss_pred ccCCCCCCHHHHHHHcCCceEecC--CHHHHHHHHHHHHh----CCCCEEEEEECCcc
Confidence 124589999999999999998 88888888887764 58999999998663
|
| >2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.7e-09 Score=119.49 Aligned_cols=99 Identities=14% Similarity=0.140 Sum_probs=76.3
Q ss_pred CceeEEEeCcc-ccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecccc----------------cCCcCHHHHHhh
Q 016909 165 DACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQ----------------FRSDGAVVKGRA 226 (380)
Q Consensus 165 ~~~vv~~~GDG-~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~~----------------~~~~~~~~~a~a 226 (380)
++.|||+.||| +++.|. ..|.+|..+++||++||.||+ |++.+.+... ....|+.++|++
T Consensus 953 ~~~Vv~i~GDG~~~~mg~--~eL~ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a 1030 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYDIGY--GGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMT 1030 (1231)
T ss_dssp CCEEEEEEEHHHHHTTTH--HHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHT
T ss_pred CCcEEEEeCcHHHHHcch--HHHHHHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHH
Confidence 47899999999 788773 469999999999887777665 5554311110 123589999999
Q ss_pred cCeeEEE-EeC-CCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016909 227 YGVRSIR-VDG-NDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 227 ~G~~~~~-VdG-~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 269 (380)
||++++. +.- .++.++.+++++|+++ +||+||++.+...
T Consensus 1031 ~G~~~va~~~v~~~~~~l~~al~eAl~~----~GP~lI~v~~~c~ 1071 (1231)
T 2c42_A 1031 YGYVYVATVSMGYSKQQFLKVLKEAESF----PGPSLVIAYATCI 1071 (1231)
T ss_dssp TSSSEEEEECTTTCHHHHHHHHHHHHHS----SSCEEEEEECCCG
T ss_pred CCCCEEEEEeccCCHHHHHHHHHHHHhc----CCCEEEEEeecCc
Confidence 9999986 433 5999999999999874 8999999998654
|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.12 Score=53.14 Aligned_cols=109 Identities=17% Similarity=0.130 Sum_probs=76.6
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.+++|..|=|.++ ..-++..|..-++|||+|.-+......... ......|....++.+--
T Consensus 62 ~~A~Gyar~t---g~p~v~~~TsGpG~~N---~~~~v~~A~~~~~Pll~itg~~~~~~~~~~-~~~Q~~d~~~~~~~~~k 134 (573)
T 2iht_A 62 VAADVLARIT---GRPQACWATLGPGMTN---LSTGIATSVLDRSPVIALAAQSESHDIFPN-DTHQCLDSVAIVAPMSK 134 (573)
T ss_dssp HHHHHHHHHH---CSCEEEEECTTHHHHH---HHHHHHHHHHHTCCEEEEEEESCGGGCCTT-TSTTCCCHHHHHGGGSS
T ss_pred HHHHHHHHHH---CCCEEEEEccCchHHH---HHHHHHHHHhhCCCEEEEcccCcccccCCc-CccccCCHHHHHHhHhh
Confidence 4566666553 4445667777877775 455677788889999999877654432220 11122367788888877
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t~ 267 (380)
...++. +++++...+++|+..+..++ ||+.|++-..
T Consensus 135 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (573)
T 2iht_A 135 YAVELQ--RPHEITDLVDSAVNAAMTEPVGPSFISLPVD 171 (573)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHTBSSCCCEEEEEEHH
T ss_pred EEEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEecch
Confidence 777776 88889999999998888775 9999998653
|
| >1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.12 Score=53.47 Aligned_cols=108 Identities=19% Similarity=0.188 Sum_probs=76.6
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|...++|||+|+-+-....... ......|....++.+-
T Consensus 63 a~~A~Gyar~t---g~p~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~g~--~~~Q~~d~~~~~~~~~ 134 (590)
T 1ybh_A 63 VFAAEGYARSS---GKPGICIATSGPGATN---LVSGLADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVEVTRSIT 134 (590)
T ss_dssp HHHHHHHHHHH---SSCEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTT--TCTTCCCHHHHHGGGS
T ss_pred HHHHHHHHHHH---CCCEEEEeccCchHHH---HHHHHHHHHhhCCCEEEEeCcCCccccCC--CcccccCHHHHHHHHh
Confidence 34567777653 4456777778888776 34567778889999999987654332211 1112246778888887
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
-...++. +++++..++++|+..++.++ ||+.|++-.
T Consensus 135 k~~~~v~--~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~ 171 (590)
T 1ybh_A 135 KHNYLVM--DVEDIPRIIEEAFFLATSGRPGPVLVDVPK 171 (590)
T ss_dssp SEEEECC--CGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred CeEEecC--CHHHHHHHHHHHHHHHhhCCCceEEEEeCc
Confidence 6677776 88899999999998887764 899998855
|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.15 Score=52.38 Aligned_cols=109 Identities=19% Similarity=0.110 Sum_probs=76.3
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCC-cCHHHHHhhc
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRS-DGAVVKGRAY 227 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~-~~~~~~a~a~ 227 (380)
.-+|.|.|.+. +.-.+++|..|=|.++ ..-++..|...++|||+|+-+-......... ... .|....++.+
T Consensus 54 a~~A~Gyar~t---g~p~v~~~TsGpG~~N---~~~~l~~A~~~~~Pll~itg~~~~~~~~~~~--~Q~~~d~~~~~~~~ 125 (563)
T 2uz1_A 54 GHAAEGYARAG---AKLGVALVTAGGGFTN---AVTPIANAWLDRTPVLFLTGSGALRDDETNT--LQAGIDQVAMAAPI 125 (563)
T ss_dssp HHHHHHHHHHH---TSCEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTSCC--TTCCCCHHHHHGGG
T ss_pred HHHHHHHHHHh---CCCEEEEEccCccHHH---HHHHHHHHHhcCCCEEEEeCCCCcccCCchh--hhhhccHHHHhhhh
Confidence 34566776653 4445667777878876 3455667888899999998776543222111 122 4677888888
Q ss_pred CeeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016909 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t~ 267 (380)
--...++. +++++...+.+|+..+..++ ||+.|++-..
T Consensus 126 tk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 126 TKWAHRVM--ATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp CSEEEECC--CGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred hceEEEcC--CHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence 77777776 88888899999998888765 9999988654
|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.13 Score=52.96 Aligned_cols=108 Identities=16% Similarity=0.034 Sum_probs=74.7
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|+-+-..........| ..|....++.+--
T Consensus 62 ~~A~Gyar~t---g~p~v~~~TsGpG~~N---~~~~l~~A~~~~vPll~itg~~~~~~~~~~~~Q--~~d~~~~~~~~tk 133 (566)
T 1ozh_A 62 FMAAAVGRIT---GKAGVALVTSGPGCSN---LITGMATANSEGDPVVALGGAVKRADKAKQVHQ--SMDTVAMFSPVTK 133 (566)
T ss_dssp HHHHHHHHHH---SSCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTC--------CCCHHHHHGGGCS
T ss_pred HHHHHHHHHH---CCCEEEEEccChHHHH---HHHHHHHHHhcCCCEEEEeCCCccccCCCCccc--ccCHHHHHHHHhh
Confidence 4566766553 4445667777888886 345677788889999999876554322211111 2467788888877
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t~ 267 (380)
...++. +++++...+++|+..+..++ ||+.|++-..
T Consensus 134 ~~~~v~--~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 134 YAIEVT--APDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred eEEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 777776 88888889999988887774 9999988653
|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.2 Score=51.71 Aligned_cols=107 Identities=18% Similarity=0.128 Sum_probs=74.6
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeec-ccccCCcCHHHHHhhcC
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI-SDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~-~~~~~~~~~~~~a~a~G 228 (380)
-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|..-++|||+|.-+-........ ..| ..|... ++.+-
T Consensus 57 ~~A~GyAr~t---g~p~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q--~~d~~~-~~~~t 127 (589)
T 2pgn_A 57 WMVNGYNYVK---DRSAAVGAWHCVGNLL---LHAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQ--QVPWQS-FTPIA 127 (589)
T ss_dssp HHHHHHHHHH---TSCCEEEEEEGGGGGG---CHHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSS--CCCGGG-GTTTS
T ss_pred HHHHHHHHHH---CCCEEEEEecCchHHH---HHHHHHHHHhcCCCEEEEecCCcccccCCCCccc--ccChhh-ccccE
Confidence 4566776553 4556888889999987 345677788899999999877654322211 111 224555 66666
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t~ 267 (380)
-...++. +++++...+.+|+..+..++ ||+.|++-..
T Consensus 128 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 165 (589)
T 2pgn_A 128 RSTQRVE--RLDKVGEAIHEAFRVAEGHPAGPAYVDIPFD 165 (589)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHTSSSCCEEEEEEETH
T ss_pred EEEeecC--CHHHHHHHHHHHHHHHhcCCCccEEEEeCHh
Confidence 5666665 88888899999998888776 9999988653
|
| >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.21 Score=51.29 Aligned_cols=109 Identities=19% Similarity=0.114 Sum_probs=71.3
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeec---cccc---CCcCHHH
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SDQF---RSDGAVV 222 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~---~~~~---~~~~~~~ 222 (380)
.-+|.|.|.+. + -.++++..|=|.++ ..-++..|...++|||+|+-+-........ .... ...+...
T Consensus 54 a~~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~ 126 (566)
T 2vbi_A 54 GFSAEGYARSN---G-AAAAVVTFSVGAIS---AMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLE 126 (566)
T ss_dssp HHHHHHHHHHH---S-CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHH
T ss_pred HHHHHHHHhhc---C-CeEEEEeCCCCHHH---HHHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHH
Confidence 34566776653 4 45566666777775 445666788899999999876554321110 0000 1125677
Q ss_pred HHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
.++.+--....+. +++++...+.+|+..+..+.||+.|++-.
T Consensus 127 ~~~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~GPV~l~iP~ 168 (566)
T 2vbi_A 127 MARQVTCAAESIT--DAHSAPAKIDHVIRTALRERKPAYLDIAC 168 (566)
T ss_dssp HHHTTCSEEEEEC--SSSSHHHHHHHHHHHHHHHTCCEEEEEET
T ss_pred HHhhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEech
Confidence 8888877777786 56666677777777777778999999865
|
| >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.25 Score=50.74 Aligned_cols=110 Identities=16% Similarity=0.089 Sum_probs=74.2
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeec---cccc---CCcCHHH
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SDQF---RSDGAVV 222 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~---~~~~---~~~~~~~ 222 (380)
.-+|.|.|.+. + ..++++..|=|+++ ..-++..|...++|||+|+-+-........ .... ...+...
T Consensus 54 a~~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~ 126 (568)
T 2wvg_A 54 GFSAEGYARAK---G-AAAAVVTYSVGALS---AFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLE 126 (568)
T ss_dssp HHHHHHHHHHH---S-CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHH
T ss_pred HHHHHHHHHhh---C-CeEEEEeCCCCHHH---HHHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHH
Confidence 34566777653 4 45667777777775 445677788899999999876654321110 0000 1125677
Q ss_pred HHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
.++.+--...++. +++++...+.+|+..+..+.||+.|++-..
T Consensus 127 ~~~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP~d 169 (568)
T 2wvg_A 127 MAKNITAAAEAIY--TPEEAPAKIDHVIKTALREKKPVYLEIACN 169 (568)
T ss_dssp HHTTSCSCEEEEC--SGGGHHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred HHHhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEechh
Confidence 8888877778886 777788888888877777789999998653
|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.2 Score=51.21 Aligned_cols=107 Identities=14% Similarity=-0.036 Sum_probs=73.4
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|..-++|||+|.-+-....... ......+..+.++.+--
T Consensus 55 ~~A~GyAr~t---g~~~v~~~TsGpG~~N---~~~gi~~A~~~~vPvl~itg~~~~~~~~~--~~~Q~~d~~~~~~~~tk 126 (549)
T 3eya_A 55 FAAGAEAQLS---GELAVCAGSCGPGNLH---LINGLFDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHPQELFRECSH 126 (549)
T ss_dssp HHHHHHHHHH---SSCEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEESCGGGTTS--CCTTCCCHHHHTSTTCS
T ss_pred HHHHHHHHHh---CCCEEEEeCCCCcHhh---hHHHHHHHHhhCCCEEEEeCCCchhhcCC--CCCCccCHHHHHhhhhh
Confidence 3566776653 4456677778888887 34567778889999999986543221111 11112356777777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
....+. +++++...+.+|+..+....||+.|++-.
T Consensus 127 ~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 161 (549)
T 3eya_A 127 YCELVS--SPEQIPQVLAIAMRKAVLNRGVSVVVLPG 161 (549)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHHHTTSEEEEEEEH
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCh
Confidence 666776 77788888888888887788999998754
|
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* | Back alignment and structure |
|---|
Probab=93.60 E-value=0.21 Score=52.61 Aligned_cols=107 Identities=18% Similarity=0.159 Sum_probs=75.1
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|..-++|||+|+-+-....... ..+...|....++.+-
T Consensus 133 a~aAdGyAr~t---Gkpgvv~~TsGpG~~N---~~~gia~A~~d~vPllvItG~~~~~~~g~--~a~Q~~Dq~~i~~~~t 204 (677)
T 1t9b_A 133 GHMAEGYARAS---GKPGVVLVTSGPGATN---VVTPMADAFADGIPMVVFTGQVPTSAIGT--DAFQEADVVGISRSCT 204 (677)
T ss_dssp HHHHHHHHHHH---SSCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTTTS--CCTTCCCHHHHTGGGS
T ss_pred HHHHHHHHHHH---CCCEEEEECCChHHHH---HHHHHHHHHHcCCCEEEEeCCCChhhcCC--CCccccCHHHHhhhhe
Confidence 34577777653 4556777888888886 34557778888999999987654322111 1111235667777776
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEE
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEAL 265 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~ 265 (380)
-....|. +++++...+.+|+..++.+ .||+.|++-
T Consensus 205 k~~~~v~--~~~~i~~~i~~A~~~A~~grpGPV~l~lP 240 (677)
T 1t9b_A 205 KWNVMVK--SVEELPLRINEAFEIATSGRPGPVLVDLP 240 (677)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHhhCCCceEEEEcC
Confidence 6677776 8889999999999888876 589999987
|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.19 Score=51.43 Aligned_cols=109 Identities=16% Similarity=0.180 Sum_probs=73.8
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|..-++|||+|.-+-...............|....++.+--
T Consensus 59 ~~A~Gyar~t---g~pgv~~~TsGpG~~N---~~~gi~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk 132 (564)
T 2q28_A 59 YAAAASGFLT---QKPGICLTVSAPGFLN---GLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAK 132 (564)
T ss_dssp HHHHHHHHHH---SSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTSCCTTCCCHHHHHGGGSS
T ss_pred HHHHHHHHHh---CCCEEEEEccCchHHH---HHHHHHHHHhcCCCEEEEeCCCCccccCCCCCccccccHHHHHHHhhh
Confidence 3566776653 4445677777777775 455677788889999999876554321100011112366778888877
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhc-cCCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIG-EGRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~-~~gP~lIe~~t 266 (380)
...++. +++++...+.+|+..+.. ..||+.|++-.
T Consensus 133 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 168 (564)
T 2q28_A 133 AAFRVN--QPQDLGIALARAIRVSVSGRPGGVYLDLPA 168 (564)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred eeeecC--CHHHHHHHHHHHHHHHhcCCCceEEEEcCH
Confidence 777776 777888888888888877 45999998754
|
| >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* | Back alignment and structure |
|---|
Probab=93.47 E-value=0.2 Score=51.37 Aligned_cols=110 Identities=19% Similarity=0.134 Sum_probs=69.2
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecc---cccCCcC-HHHHHh
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS---DQFRSDG-AVVKGR 225 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~---~~~~~~~-~~~~a~ 225 (380)
-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|..-++|||+|+-+-......... .+....+ ....++
T Consensus 73 ~~A~GyAr~t---gkp~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~ 146 (565)
T 2nxw_A 73 FAADAAARYS---STLGVAAVTYGAGAFN---MVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFK 146 (565)
T ss_dssp HHHHHHHHHH---TSCEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHT
T ss_pred HHHHHHHHHh---CCCeEEEECCCCCHHH---HHHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHH
Confidence 3567776653 4445666777888776 3456777888999999998764332211100 0001122 556777
Q ss_pred hcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 226 a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
.+--...++. +++++...+.+|+..+..+.||+.|++-..
T Consensus 147 ~~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 186 (565)
T 2nxw_A 147 EITVAQARLD--DPAKAPAEIARVLGAARAQSRPVYLEIPRN 186 (565)
T ss_dssp TSCSCEEECC--CTTTHHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred hhheEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEECChh
Confidence 7766667775 666667777777776666689999998743
|
| >1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.09 Score=51.79 Aligned_cols=113 Identities=14% Similarity=0.163 Sum_probs=63.5
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceee-ecccccCCcCHHHHHhh
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST-PISDQFRSDGAVVKGRA 226 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~-~~~~~~~~~~~~~~a~a 226 (380)
.+.+|+|+|++ ..+.++...|.|-.. ..+.|..++..++|+|+++-+....... +.....+ +.+..++..
T Consensus 76 a~~~a~Gaa~a-----G~r~~~~ts~~G~~~---~~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~s-d~~~~~~~~ 146 (395)
T 1yd7_A 76 SIAAAIGASWA-----GAKAMTATSGPGFSL---MQENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQG-DIMQAIWGT 146 (395)
T ss_dssp HHHHHHHHHHT-----TCCEEEEEETTHHHH---HTTTCC----CCCCEEEEEEC-------------------------
T ss_pred HHHHHHHHHHh-----CCcEEEEeCchHHHH---HHHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccchh-HHHHHHhcc
Confidence 35667777776 234667777887653 3455666778889999988765533211 1111110 111223222
Q ss_pred ---cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCC
Q 016909 227 ---YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 273 (380)
Q Consensus 227 ---~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 273 (380)
+|++++... ++.+.+..+..|++.+++.+.|+++....+ . +|+
T Consensus 147 ~g~~g~~vl~p~--~~qea~~l~~~A~~lA~~~~~PVi~~~~~~-l-~h~ 192 (395)
T 1yd7_A 147 HGDHSLIVLSPS--TVQEAFDFTIRAFNLSEKYRTPVILLTDAE-V-GHM 192 (395)
T ss_dssp --CCCCEEECCC--SHHHHHHHHHHHHHHHHHHTSEEEEEECHH-H-HHC
T ss_pred CCCcceEEEeCC--CHHHHHHHHHHHHHHHHHHCCCEEEEcchh-H-hCe
Confidence 467777665 999999999999988887889999987764 2 454
|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* | Back alignment and structure |
|---|
Probab=93.11 E-value=0.21 Score=51.24 Aligned_cols=109 Identities=15% Similarity=0.108 Sum_probs=73.2
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +...+++|..|=|+++ ..-++..|..-++|||+|.-+-...............|....++.+--
T Consensus 61 ~~A~GyAr~t---g~pgv~~~TsGpG~~N---~~~~i~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk 134 (568)
T 2c31_A 61 YAASIAGYIE---GKPGVCLTVSAPGFLN---GVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCK 134 (568)
T ss_dssp HHHHHHHHHH---SSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSS
T ss_pred HHHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEccCCCccccCCCCCcccccCHHHHHHhhhh
Confidence 3566766553 4445677777777775 456677788899999999876543322100011112356677777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhc-cCCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIG-EGRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~-~~gP~lIe~~t 266 (380)
....+. +++.+...+.+|+..+.. ..||+.|++-.
T Consensus 135 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 170 (568)
T 2c31_A 135 ASFRIN--SIKDIPIGIARAVRTAVSGRPGGVYVDLPA 170 (568)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEET
T ss_pred eeeecC--CHHHHHHHHHHHHHHhcCCCCceEEEeCCH
Confidence 677776 778888888899888877 45999998754
|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* | Back alignment and structure |
|---|
Probab=92.98 E-value=0.19 Score=51.86 Aligned_cols=107 Identities=20% Similarity=0.060 Sum_probs=72.3
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+ .+.-.++++..|=|.++ ..-++..|...++|||+|+-+-......... ....|....++.+-
T Consensus 56 a~~A~GyAr~---tgk~~v~~~tsGpG~~N---~~~gl~~A~~~~vPll~Itg~~p~~~~g~~~--~Q~~d~~~~~~~~t 127 (590)
T 1v5e_A 56 AMAAVMQSKF---GGNLGVTVGSGGPGASH---LINGLYDAAMDNIPVVAILGSRPQRELNMDA--FQELNQNPMYDHIA 127 (590)
T ss_dssp HHHHHHHHHT---TCCCCEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTTTC--TTCCCCHHHHHTTC
T ss_pred HHHHHHHHHH---HCCCEEEEeCcChHHHH---HHHHHHHHHhcCCCEEEEcCCCCcccCCCCc--ccccCHHHHHHhhc
Confidence 3456666654 24445667777888776 3455667888899999998776543221111 11235667777776
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
-....+. +++++...+++|+..+..++ ||+.| +-.
T Consensus 128 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~ 163 (590)
T 1v5e_A 128 VYNRRVA--YAEQLPKLVDEAARMAIAKRGVAVLE-VPG 163 (590)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHHHTTSEEEEE-EET
T ss_pred cEEEEeC--CHHHHHHHHHHHHHHHhcCCCceEEE-Ecc
Confidence 6677776 88888889999998888777 89999 643
|
| >3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=92.91 E-value=0.41 Score=50.34 Aligned_cols=102 Identities=13% Similarity=0.041 Sum_probs=67.8
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce--eeecccccCCcCHHHHHh
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGR 225 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i--~~~~~~~~~~~~~~~~a~ 225 (380)
.+++|+|+|+. +.-++++.++.+-.. ..++.+.+++..++||+++....+++. +++++ .+..+++-...
T Consensus 415 ~v~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~TH--q~~ed~a~lr~ 485 (663)
T 3kom_A 415 MAAIMNGLSLY----GGIKPYGGTFLVFSD---YSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTH--QPIEHVPSLRL 485 (663)
T ss_dssp HHHHHHHHHHH----SSCEEEEEEEGGGHH---HHHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHT
T ss_pred HHHHHHHHHHc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCCc--CCHHHHHHHhc
Confidence 45667788765 233556666655442 245778888999999999987777653 34444 23344444443
Q ss_pred hcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 226 a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
--|+.++.-. |+.+...+++.|++. .++|++|-
T Consensus 486 iPnl~V~~Pa--d~~e~~~~l~~A~~~---~~~Pv~ir 518 (663)
T 3kom_A 486 IPNLSVWRPA--DTIETMIAWKEAVKS---KDTPSVMV 518 (663)
T ss_dssp STTCEEECCC--SHHHHHHHHHHHHHC---SSCCEEEE
T ss_pred CCCcEEEeeC--CHHHHHHHHHHHHHh---CCCCEEEE
Confidence 3477666544 899999999998862 47999884
|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* | Back alignment and structure |
|---|
Probab=92.53 E-value=0.21 Score=51.78 Aligned_cols=107 Identities=15% Similarity=0.063 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.++++..|=|+++ ..-++..|..-++|||+|+-.-....... ......|....++.+--
T Consensus 64 ~aA~GyAr~t---g~~gv~~~TsGpG~~N---~~~gia~A~~~~vPvl~itG~~~~~~~~~--~~~Q~~d~~~~~~~~tk 135 (603)
T 4feg_A 64 MAAAADAKLT---GKIGVCFGSAGPGGTH---LMNGLYDAREDHVPVLALIGQFGTTGMNM--DTFQEMNENPIYADVAD 135 (603)
T ss_dssp HHHHHHHHHH---SSCEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEECCTTTTTS--CCTTCCCCGGGGTTTCS
T ss_pred HHHHHHHHHh---CCceEEEecCCchHHH---HHHHHHHHHHcCCCEEEEecCCcccccCC--CccccccHHHHhhhhce
Confidence 4566766553 4455677777888887 34567778889999999986533221110 01111244566666665
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
...++. +++++...+.+|+..+....||+.|++-.
T Consensus 136 ~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 170 (603)
T 4feg_A 136 YNVTAV--NAATLPHVIDEAIRRAYAHQGVAVVQIPV 170 (603)
T ss_dssp EEEECC--CSTTHHHHHHHHHHHHHHHTSEEEEEEET
T ss_pred EEEEcC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCh
Confidence 666665 66667777777776666678999998753
|
| >2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.48 E-value=0.24 Score=51.55 Aligned_cols=103 Identities=12% Similarity=0.051 Sum_probs=68.1
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce-eeecccccCCcCHHHHHhh
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i-~~~~~~~~~~~~~~~~a~a 226 (380)
.+++|.|+|++ | -++++.++++... =.+-+.++.++..++|+++++.+.++.. .++++.+ ..+++-...-
T Consensus 373 ~~~~a~G~A~~----G-~rp~~~~~~~F~~--~a~dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH~~--~~d~~~~~~i 443 (621)
T 2o1s_A 373 AVTFAAGLAIG----G-YKPIVAIYSTFLQ--RAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQG--AFDLSYLRCI 443 (621)
T ss_dssp HHHHHHHHHHT----T-CEEEEEEETTGGG--GGHHHHHHTTTTTTCCCEEEEESCBCCCTTCGGGCB--CSHHHHTTTS
T ss_pred HHHHHHHHHHC----C-CEEEEEehHhHHH--HHHHHHHHHHHhcCCCEEEEEECCccCCCCCCccCc--hHHHHHHhcC
Confidence 35567777764 2 4567777877642 2333456778899999999998877632 3343332 2333333333
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
-||.++.-. |+.+.+..++.|++. .++|++|-.
T Consensus 444 P~l~v~~P~--d~~e~~~~l~~a~~~---~~~Pv~i~~ 476 (621)
T 2o1s_A 444 PEMVIMTPS--DENECRQMLYTGYHY---NDGPSAVRY 476 (621)
T ss_dssp TTCEEECCS--SHHHHHHHHHHHHHC---CSSCEEEEC
T ss_pred CCCEEEecC--CHHHHHHHHHHHHHc---CCCCEEEEe
Confidence 388877655 999999999999864 378998854
|
| >3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* | Back alignment and structure |
|---|
Probab=92.27 E-value=0.54 Score=48.92 Aligned_cols=100 Identities=17% Similarity=0.135 Sum_probs=65.7
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce--eeecccccCCcCHHHHHhh
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i--~~~~~~~~~~~~~~~~a~a 226 (380)
+++|+|+|++ |...++++.++++.. ..++.+.+++..++|+++++.+-+++. +++++ .+..+++-...-
T Consensus 368 v~~a~G~A~~----G~~~~~~~~f~~Fl~---~a~dqi~~~a~~~~~v~~v~~~~g~~~G~dG~tH--~~~ed~a~l~~i 438 (616)
T 3mos_A 368 VSIAVGCATR----NRTVPFCSTFAAFFT---RAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQ--MALEDLAMFRSV 438 (616)
T ss_dssp HHHHHHHHGG----GCCEEEEEEEGGGGG---GGHHHHHHHHHTTCCEEEEEESBSGGGCTTCGGG--CBSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCCEEEEehHHHHH---HHHHHHHHHHHhCCCeEEEEECCCccccCCCCcc--cCHHHHHHhcCC
Confidence 3455555554 433466778988874 456778888899999999988777643 33433 234444444433
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
-|+.++.- .|+.++..+++.|++ .++|++|-
T Consensus 439 P~l~V~~P--~d~~e~~~~l~~a~~----~~gp~~ir 469 (616)
T 3mos_A 439 PTSTVFYP--SDGVATEKAVELAAN----TKGICFIR 469 (616)
T ss_dssp TTEEEECC--CSHHHHHHHHHHHHT----CCSEEEEE
T ss_pred CCCEEEec--CCHHHHHHHHHHHHh----cCCCEEEE
Confidence 36666554 489999998888875 36898773
|
| >3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* | Back alignment and structure |
|---|
Probab=92.22 E-value=0.5 Score=49.36 Aligned_cols=101 Identities=13% Similarity=-0.021 Sum_probs=67.5
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce--eeecccccCCcCHHHHHh
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGR 225 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i--~~~~~~~~~~~~~~~~a~ 225 (380)
.+++|.|+|+. +.-++++.++..-+ + ..++.+.+++..++||+|+....+++. +++++ .+..+++-...
T Consensus 394 ~v~~a~GlA~~----gG~~P~~~~f~~F~--~-~~~~~ir~~a~~~~pv~~~~t~~g~g~G~dG~TH--q~~ed~a~lr~ 464 (632)
T 3l84_A 394 MAAINNAFARY----GIFLPFSATFFIFS--E-YLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTH--QPIEQLSTFRA 464 (632)
T ss_dssp HHHHHHHHHHH----SSCEEEEEEEGGGH--H-HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGG--SCSSHHHHHHH
T ss_pred HHHHHHHHHHc----CCCEEEEEecHHHH--H-HHHHHHHHHhccCCCEEEEEECCCcCCCCCCCCC--CCHhHHHHHhc
Confidence 35667777765 23345666554333 2 345778888999999999998777653 45544 23445544444
Q ss_pred hcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 226 a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
--|+.++.-- |+.+...+++.|++ .++|++|-
T Consensus 465 iP~l~V~~P~--d~~e~~~~l~~A~~----~~~Pv~ir 496 (632)
T 3l84_A 465 MPNFLTFRPA--DGVENVKAWQIALN----ADIPSAFV 496 (632)
T ss_dssp SSSCEEECCS--SHHHHHHHHHHHHH----CSSCEEEE
T ss_pred CCCCEEEecC--CHHHHHHHHHHHHh----CCCCEEEE
Confidence 4477777644 89999999999986 47999884
|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.22 E-value=0.57 Score=48.52 Aligned_cols=108 Identities=16% Similarity=0.149 Sum_probs=73.4
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+.. ++-.++++..|=|+++ ..-++..|..-++|||+|+-+-........ .....|....++.+--
T Consensus 79 ~~A~GyAr~tg--g~~~v~~~TsGpG~~N---~~~~l~~A~~~~vPlvvItg~~p~~~~~~~--~~Q~~d~~~~~~~~tk 151 (616)
T 2pan_A 79 HMAEGYTRATA--GNIGVCLGTSGPAGTD---MITALYSASADSIPILCITGQAPRARLHKE--DFQAVDIEAIAKPVSK 151 (616)
T ss_dssp HHHHHHHHHST--TCCEEEEECSTHHHHT---SHHHHHHHHHTTCCEEEEEEECCGGGTTTT--CTTCCCHHHHHGGGSS
T ss_pred HHHHHHHHhcC--CCceEEEeCCCchHHH---HHHHHHHHHhcCCCEEEEecCCcccccCcc--cccccCHHHHHHHHHH
Confidence 45667766520 2334556677888776 245677788889999999876554322111 1123467788888876
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
....+. ++.++...+++|+..++.+ .||+.|++-.
T Consensus 152 ~~~~v~--~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~ 187 (616)
T 2pan_A 152 MAVTVR--EAALVPRVLQQAFHLMRSGRPGPVLVDLPF 187 (616)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHHSSSCCCEEEEEEH
T ss_pred hhcccC--CHHHHHHHHHHHHHHHhcCCCceEEEEcch
Confidence 677775 7888999999999888776 4899998854
|
| >3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* | Back alignment and structure |
|---|
Probab=91.84 E-value=0.66 Score=48.98 Aligned_cols=102 Identities=17% Similarity=0.099 Sum_probs=65.0
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcc--eeeecccccCCcCHHHHHh
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA--ISTPISDQFRSDGAVVKGR 225 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~--i~~~~~~~~~~~~~~~~a~ 225 (380)
.+++|.|+|+. +.-++++..+.--+. ...-++.+++..++||+|++...+++ .+++++. +..+++-...
T Consensus 439 mv~~A~GlA~~----gG~~P~~~tf~~Fs~---f~~~air~~al~~lpVv~v~~~~gigvG~dG~THq--~ied~a~lr~ 509 (690)
T 3m49_A 439 MGAAMNGIALH----GGLKTYGGTFFVFSD---YLRPAIRLAALMQLPVTYVFTHDSIAVGEDGPTHE--PIEQLAALRA 509 (690)
T ss_dssp HHHHHHHHHHH----SSCEEEEEEEGGGGG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGC--CSSHHHHHHT
T ss_pred HHHHHHHHHHc----CCCEEEEEecHHHHH---HHHHHHHHHHhcCCCcEEEEECCCcCCCCCCCccC--CHHHHHHHhc
Confidence 35667787775 223344444422221 12345777899999999999988864 3455543 3445544443
Q ss_pred hcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 226 a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
--|+.++.-- |..+...+++.|++. .++|++|-
T Consensus 510 iPnl~V~~Pa--d~~E~~~~l~~Ai~~---~~~Pv~ir 542 (690)
T 3m49_A 510 MPNVSVIRPA--DGNESVAAWRLALES---TNKPTALV 542 (690)
T ss_dssp STTCEEECCS--SHHHHHHHHHHHHHC---SSSCEEEE
T ss_pred CCCCEEEeeC--CHHHHHHHHHHHHHc---CCCCEEEE
Confidence 3477766544 899999999999863 46899884
|
| >2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.73 E-value=0.63 Score=48.75 Aligned_cols=102 Identities=15% Similarity=0.085 Sum_probs=67.9
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce--eeecccccCCcCHHHHHhh
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i--~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. |.-++++..+.=.+. ..++++.+++..++||++++.+.+++. .++++ .+..+++-...-
T Consensus 410 ~~~a~GlA~~----Gg~~P~~~t~~~F~~---~~~~air~~a~~~lpvv~~~t~~g~g~G~dG~tH--q~~edla~lr~i 480 (651)
T 2e6k_A 410 GAILNGLNLH----GGYRAYGGTFLVFSD---YMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTH--QPVEHLMSLRAM 480 (651)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGGG---GSHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEeHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCcCcc--ccHHHHHHhcCC
Confidence 4577787765 323455555532221 245778889999999999998888764 34444 334455544333
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
-|+.++.-. |..++..+++.|++. .++|++|-.
T Consensus 481 P~l~V~~Pa--d~~E~~~~l~~A~~~---~~~Pv~i~~ 513 (651)
T 2e6k_A 481 PNLFVIRPA--DAYETFYAWLVALRR---KEGPTALVL 513 (651)
T ss_dssp TTCEEECCS--SHHHHHHHHHHHHHC---CSSCEEEEC
T ss_pred CCcEEEecC--CHHHHHHHHHHHHHc---CCCCEEEEE
Confidence 477777654 999999999999863 368998854
|
| >1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B | Back alignment and structure |
|---|
Probab=91.69 E-value=0.35 Score=46.32 Aligned_cols=101 Identities=16% Similarity=0.097 Sum_probs=64.0
Q ss_pred CccHHHHHHHHHhhhcCCCceeEE-E-eCccccCcchHHHHHH-HHHH--------cCCCEEEEEEcCCcceeeeccccc
Q 016909 147 TQLPHAVGAAYALKMDRKDACAVT-Y-FGDGGTSEGDFHAALN-FSAV--------TEAPVIFICRNNGWAISTPISDQF 215 (380)
Q Consensus 147 ~~~p~AvG~A~A~k~~~~~~~vv~-~-~GDG~~~eG~~~Eal~-~A~~--------~~Lpvi~vv~NN~~~i~~~~~~~~ 215 (380)
+.+++|.|+|++ | .++++ + ++++.. ..++.+. .++. +++|+++++.+.+ +..++++.
T Consensus 63 ~~~~~a~G~A~~----G--~rp~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~~~G~th~-- 130 (338)
T 1qs0_B 63 GIVGTAVGMGAY----G--LRPVVEIQFADYFY---PASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-GIYGGQTH-- 130 (338)
T ss_dssp HHHHHHHHHHHH----T--CEEEEECSCGGGCG---GGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-SSSCCSSS--
T ss_pred HHHHHHHHHHhC----C--CEEEEEeccHhHHH---HHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-CCCCcccc--
Confidence 346678888876 2 34444 3 888862 3445543 3443 3599999987654 44444332
Q ss_pred CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016909 216 RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 216 ~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~ 265 (380)
+..++.-...-.||.++.-. |+.+.+..++.|++. ++|++|-..
T Consensus 131 s~~d~~~l~~iP~l~V~~Ps--d~~e~~~~l~~A~~~----~~Pv~i~~p 174 (338)
T 1qs0_B 131 SQSPEAMFTQVCGLRTVMPS--NPYDAKGLLIASIEC----DDPVIFLEP 174 (338)
T ss_dssp SCCCHHHHTTSTTCEEECCC--SHHHHHHHHHHHHHS----SSCEEEEEE
T ss_pred cccHHHHHhcCCCCEEEeeC--CHHHHHHHHHHHHhc----CCcEEEEEc
Confidence 23344433333488888765 999999999998863 689998543
|
| >2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* | Back alignment and structure |
|---|
Probab=91.66 E-value=0.77 Score=48.23 Aligned_cols=101 Identities=11% Similarity=0.004 Sum_probs=66.8
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce--eeecccccCCcCHHHHHhh
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i--~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. +.-+++++.+...+. ..++++..++..++||++++.+.+++. +++++ .+..+++-...-
T Consensus 415 v~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~~~G~dG~tH--q~~edla~lr~i 485 (669)
T 2r8o_A 415 TAIANGISLH----GGFLPYTSTFLMFVE---YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTH--QPVEQVASLRVT 485 (669)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGGG---TTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCeEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCCcCcCCCCCcc--CCHHHHHHhcCC
Confidence 4567777765 223455555544432 245778889999999999998887764 34444 234444444333
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
-|+.++.-- |..++..+++.|++. .++|++|-
T Consensus 486 P~l~V~~Pa--d~~E~~~~l~~a~~~---~~~Pv~i~ 517 (669)
T 2r8o_A 486 PNMSTWRPC--DQVESAVAWKYGVER---QDGPTALI 517 (669)
T ss_dssp TTCEEECCS--SHHHHHHHHHHHHHC---SSSCEEEE
T ss_pred CCCEEEecC--CHHHHHHHHHHHHHh---CCCcEEEE
Confidence 477666544 999999999999863 37899884
|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.32 E-value=0.3 Score=50.58 Aligned_cols=108 Identities=13% Similarity=0.032 Sum_probs=69.1
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|..-++|||+|.-+-..........| ..|....++.+--
T Consensus 83 ~aA~GyAr~t---gkpgv~~~TsGpG~~N---~~~gia~A~~~~vPlv~ItG~~~~~~~g~~~~Q--~~d~~~~~~~~tk 154 (604)
T 2x7j_A 83 FFALGLAKAK---QRPVLLICTSGTAAAN---FYPAVVEAHYSRVPIIVLTADRPHELREVGAPQ--AINQHFLFGNFVK 154 (604)
T ss_dssp HHHHHHHHHH---TSCEEEEECSSHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGSSSCCTT--CCCCTTTTGGGSS
T ss_pred HHHHHHHHhh---CCCEEEEECChhHHHH---HHHHHHHHhhcCCCEEEEeCCCCHHHhCCCCCC--cCcHHHHhhhhee
Confidence 3566776653 4556777778888887 345677788889999999876543322111111 2244455666655
Q ss_pred eEEEEeCCCHHH-------HHHHHHHHHHHhhc-cCCcEEEEEEee
Q 016909 230 RSIRVDGNDALA-------IYSAVHAAREMAIG-EGRPILIEALTY 267 (380)
Q Consensus 230 ~~~~VdG~D~~a-------v~~a~~~A~~~ar~-~~gP~lIe~~t~ 267 (380)
....|. ++++ +...+++|+..+.. ..||+.|++-..
T Consensus 155 ~~~~v~--~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 198 (604)
T 2x7j_A 155 FFTDSA--LPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLR 198 (604)
T ss_dssp CEEECC--CCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred eeeecC--CCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccC
Confidence 566665 3333 77778888877776 469999998753
|
| >1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=91.22 E-value=0.87 Score=47.91 Aligned_cols=102 Identities=18% Similarity=0.100 Sum_probs=66.3
Q ss_pred cHHHHHHHHHhhhcC-CCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce--eeecccccCCcCHHHHHh
Q 016909 149 LPHAVGAAYALKMDR-KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGR 225 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~-~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i--~~~~~~~~~~~~~~~~a~ 225 (380)
+++|.|+|+. | .-++++.++...+. ..++++..++..++||++++...+++. .++++ .+..+++-...
T Consensus 427 v~~a~GlA~~----G~~~~P~~~t~~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~tH--q~~edla~lr~ 497 (675)
T 1itz_A 427 GAICNGIALH----SPGFVPYCATFFVFTD---YMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTH--QPIEHLVSFRA 497 (675)
T ss_dssp HHHHHHHHTT----CTTCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHS
T ss_pred HHHHHHHHhc----CCCCEEEEEEHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCCCCc--CcHHHHHHhcc
Confidence 4466666643 4 23556666654442 456788889999999999997777653 34444 23444444333
Q ss_pred hcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 226 a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
--|+.++. --|..++..+++.|++. .++|++|-.
T Consensus 498 iP~l~V~~--Pad~~e~~~~l~~a~~~---~~~Pv~i~~ 531 (675)
T 1itz_A 498 MPNILMLR--PADGNETAGAYKVAVLN---RKRPSILAL 531 (675)
T ss_dssp SSSCEEEC--CCSHHHHHHHHHHHHHC---TTSCEEEEE
T ss_pred CCCeEEEE--CCCHHHHHHHHHHHHHh---CCCcEEEEe
Confidence 33666554 35999999999999863 378998843
|
| >2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B | Back alignment and structure |
|---|
Probab=90.99 E-value=0.49 Score=45.55 Aligned_cols=99 Identities=15% Similarity=0.029 Sum_probs=61.4
Q ss_pred ccHHHHHHHHHhhhcCCCceeEE-EeCccccCcchHHHHHHH-HH--------HcCCCEEEEEEcCCcceeeecccccCC
Q 016909 148 QLPHAVGAAYALKMDRKDACAVT-YFGDGGTSEGDFHAALNF-SA--------VTEAPVIFICRNNGWAISTPISDQFRS 217 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~-~~GDG~~~eG~~~Eal~~-A~--------~~~Lpvi~vv~NN~~~i~~~~~~~~~~ 217 (380)
.+++|.|+|++ | -++++. .+++... ..++.+.. ++ +.++||++++.+...+-.++++.+ +.
T Consensus 74 ~v~~a~G~A~~----G-~rp~~~~~f~~F~~---~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~G~~g~~G~tHs~-~~ 144 (341)
T 2ozl_B 74 FAGIAVGAAMA----G-LRPICEFMTFNFSM---QAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQ-CF 144 (341)
T ss_dssp HHHHHHHHHHT----T-CEEEEECSSGGGGG---GGHHHHHTTTTTHHHHTTSSCCCCCEEEEECSCCSSCCGGGCC-CC
T ss_pred HHHHHHHHHHC----C-CEEEEEeccHHHHH---HHHHHHHHHHHHHHhhccccCCCCEEEEEcCcCCCCCCcchhh-HH
Confidence 45677777765 2 234444 3888772 33455544 33 278999999986322224444422 22
Q ss_pred cCHHHHHhhc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 218 DGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 218 ~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
+ ...... ||.++.-. |+.+.+..++.|++. ++|++|-.
T Consensus 145 -e--a~l~~iP~l~V~~Ps--d~~e~~~~l~~a~~~----~~Pv~i~~ 183 (341)
T 2ozl_B 145 -A--AWYGHCPGLKVVSPW--NSEDAKGLIKSAIRD----NNPVVVLE 183 (341)
T ss_dssp -H--HHHHTSTTCEEECCC--SHHHHHHHHHHHHHS----SSCEEEEE
T ss_pred -H--HHhccCCCCEEEEeC--CHHHHHHHHHHHHhc----CCCEEEEE
Confidence 2 233333 77777655 999999999998863 68998855
|
| >2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* | Back alignment and structure |
|---|
Probab=90.87 E-value=0.59 Score=47.79 Aligned_cols=109 Identities=13% Similarity=0.048 Sum_probs=69.2
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceee---eccc---ccCCcCHHH
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST---PISD---QFRSDGAVV 222 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~---~~~~---~~~~~~~~~ 222 (380)
.-+|.|.|.+. + ..++++..|=|+++ ..-++..|...++|||+|+-+-...... .... .....+..+
T Consensus 55 a~~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q~~~~ 127 (563)
T 2vk8_A 55 AYAADGYARIK---G-MSCIITTFGVGELS---ALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHR 127 (563)
T ss_dssp HHHHHHHHHHH---S-CEEEEEETTHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSSHHHH
T ss_pred HHHHHHHHHhh---C-CcEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchHHHHH
Confidence 34577777664 4 34677777888875 3456777888899999998765432110 0000 001124567
Q ss_pred HHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
.++.+--....+. +++++.+.+.+|+..+..+.||+.|++-.
T Consensus 128 ~~~~~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 169 (563)
T 2vk8_A 128 MSANISETTAMIT--DIATAPAEIDRCIRTTYVTQRPVYLGLPA 169 (563)
T ss_dssp HHHTTCSEEEECC--CTTTHHHHHHHHHHHHHHHTSCEEEEEET
T ss_pred HhhhhEEEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEech
Confidence 7777776777776 65556666666666665567999998865
|
| >1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* | Back alignment and structure |
|---|
Probab=90.44 E-value=0.85 Score=48.02 Aligned_cols=101 Identities=15% Similarity=0.094 Sum_probs=65.9
Q ss_pred cHHHHHHHHHhhhcCCCc-eeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce--eeecccccCCcCHHHHHh
Q 016909 149 LPHAVGAAYALKMDRKDA-CAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGR 225 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~-~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i--~~~~~~~~~~~~~~~~a~ 225 (380)
+++|.|+|+. |.-+ +++..+..-+. ..++++..++..++||+|++...+++. +++++ .+..+++-...
T Consensus 422 vg~a~GlA~~----Gg~~~P~~~~f~~F~~---~~~~air~~a~~~lpvv~v~t~~g~g~G~dG~tH--q~~edla~lr~ 492 (680)
T 1gpu_A 422 GAIMNGISAF----GANYKPYGGTFLNFVS---YAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTH--QPIETLAHFRS 492 (680)
T ss_dssp HHHHHHHHHH----CTTCEEEEEEEHHHHG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHT
T ss_pred HHHHHHHHhc----CCCceEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCcc--CCHHHHHHhcC
Confidence 4567777765 3234 45555533322 245678889999999999997777664 34544 23444444433
Q ss_pred hcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 226 a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
--|+.++.- .|+.++..+++.|++. .++|++|-
T Consensus 493 iP~l~V~~P--ad~~e~~~~l~~A~~~---~~~Pv~i~ 525 (680)
T 1gpu_A 493 LPNIQVWRP--ADGNEVSAAYKNSLES---KHTPSIIA 525 (680)
T ss_dssp SSSCEEECC--CSHHHHHHHHHHHHHC---SSCCEEEE
T ss_pred CCCCEEEec--CCHHHHHHHHHHHHHh---CCCcEEEE
Confidence 347666654 4899999999999863 37899884
|
| >2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* | Back alignment and structure |
|---|
Probab=90.28 E-value=0.8 Score=46.90 Aligned_cols=109 Identities=16% Similarity=0.055 Sum_probs=69.4
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeec---cccc---CCcCHHH
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SDQF---RSDGAVV 222 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~---~~~~---~~~~~~~ 222 (380)
.-+|.|.|.+. + ..++++..|=|+++ ..-++..|...++|||+|+-+......... .... ...+...
T Consensus 76 ~~~A~GyAr~t---G-~~v~~~tsGpG~~N---~~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (570)
T 2vbf_A 76 SYMADGYARTK---K-AAAFLTTFGVGELS---AINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMK 148 (570)
T ss_dssp HHHHHHHHHHH---S-CEEEEEETTHHHHH---HHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHH
T ss_pred HHHHHHHHHHh---C-CeEEEEcCCCCHHH---HHHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHH
Confidence 34577777653 4 45677777877775 345677788889999999977654321110 0000 1122456
Q ss_pred HHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
.++.+--....+. + +++...+++|+..+..+.||+.|++-..
T Consensus 149 ~~~~~tk~~~~v~--~-~~~~~~l~~A~~~A~~~~GPV~l~iP~d 190 (570)
T 2vbf_A 149 MHEPVTAARTLLT--A-ENATYEIDRVLSQLLKERKPVYINLPVD 190 (570)
T ss_dssp HTGGGCSEEEECC--T-TTHHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_pred HhhhhEEEEEEEC--c-ccHHHHHHHHHHHHhhCCCCEEEEcchh
Confidence 7777776777776 4 5666667777666666679999998653
|
| >1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* | Back alignment and structure |
|---|
Probab=90.15 E-value=0.38 Score=48.76 Aligned_cols=110 Identities=20% Similarity=0.041 Sum_probs=68.6
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +...++++..|=|.++ ..-++..|...++|||+|.-+-..........+. ..|....++.+-
T Consensus 51 a~~A~Gyar~t---g~~~v~~~tsGpG~~N---~~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~q~-~~d~~~~~~~~~ 123 (528)
T 1q6z_A 51 VGIADGYAQAS---RKPAFINLHSAAGTGN---AMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLT-NVDAANLPRPLV 123 (528)
T ss_dssp HHHHHHHHHHH---TSCEEEEEEHHHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHTTTCTTC-CTTGGGSSTTSC
T ss_pred HHHHHHHHHHh---CCCEEEEEcCChHHHH---HHHHHHHHhhcCCCEEEEeCCCcccccCCCcccc-cccHHHHHHHhh
Confidence 34577777653 4445666777888775 3455667888999999998765432211111111 024445555554
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t~ 267 (380)
-...++. +++++...+.+|+..+..++ ||+.|++-..
T Consensus 124 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 161 (528)
T 1q6z_A 124 KWSYEPA--SAAEVPHAMSRAIHMASMAPQGPVYLSVPYD 161 (528)
T ss_dssp SCEECCS--SGGGHHHHHHHHHHHHHSSSCCCEEEEEEGG
T ss_pred HhhhcCC--CHHHHHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 4455554 67777888888887777654 7999998763
|
| >1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 | Back alignment and structure |
|---|
Probab=89.85 E-value=1 Score=43.85 Aligned_cols=99 Identities=16% Similarity=0.004 Sum_probs=55.7
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEE-eCccccCcchHHHHH-HHHHHc--------CCCEEEEEEcCCcceeeecccccCC
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAAL-NFSAVT--------EAPVIFICRNNGWAISTPISDQFRS 217 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~-~GDG~~~eG~~~Eal-~~A~~~--------~Lpvi~vv~NN~~~i~~~~~~~~~~ 217 (380)
.+++|.|+|++ | -++++.+ +++... ..++.+ +-++.. ++||++++.+.+..-..+++. .
T Consensus 110 ~v~~a~G~A~~----G-~rpv~~~tf~~Fl~---~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g~g~~hs---~ 178 (369)
T 1ik6_A 110 ILGFAMGMAMA----G-LKPVAEIQFVDFIW---LGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGLYHS---N 178 (369)
T ss_dssp HHHHHHHHHHT----T-CEEEEECCCC-------CCHHHHHHHHHHHHC------CCCCEEEEEECC-------------
T ss_pred HHHHHHHHHHC----C-CeeEEEecchhHHH---HHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCCCCcccc---c
Confidence 35667777765 2 2344444 888762 233444 334543 999999998776432222221 1
Q ss_pred cCHHHHHhhc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 218 DGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 218 ~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
.+ .....+. ||.++.-. |+.+.+..++.|++ .++|++|-.
T Consensus 179 ~~-~a~l~~iPnl~V~~Ps--d~~e~~~ll~~A~~----~~~Pv~i~~ 219 (369)
T 1ik6_A 179 SP-EAIFVHTPGLVVVMPS--TPYNAKGLLKAAIR----GDDPVVFLE 219 (369)
T ss_dssp -H-HHHHHTCTTCEEECCC--SHHHHHHHHHHHHH----SSSCEEEEE
T ss_pred cH-HHHHcCCCCcEEEecC--CHHHHHHHHHHHHh----CCCCEEEEE
Confidence 22 2344444 77777655 99999999999886 478998843
|
| >2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=89.63 E-value=0.45 Score=49.63 Aligned_cols=102 Identities=17% Similarity=0.091 Sum_probs=65.8
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce-eeecccccCCcCHHHHHhh
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i-~~~~~~~~~~~~~~~~a~a 226 (380)
.+++|+|+|++ | -++++.++.+... =.+-..++.++..++|+++++.+.++.. +++++.. ..+++-...-
T Consensus 376 ~~~~a~G~A~~----G-~rp~~~~~~~F~~--~a~dqi~~~~a~~~~pvv~~~~~~g~~g~dG~tH~~--~~d~a~~r~i 446 (629)
T 2o1x_A 376 AVTTAAGMALQ----G-MRPVVAIYSTFLQ--RAYDQVLHDVAIEHLNVTFCIDRAGIVGADGATHNG--VFDLSFLRSI 446 (629)
T ss_dssp HHHHHHHHHHT----T-CEEEEEEEHHHHG--GGHHHHHHTTTTTTCCCEEEEESBBCCCTTCTTTCB--CSHHHHTTTS
T ss_pred HHHHHHHHHHc----C-CEEEEEecHHHHH--HHHHHHHHHHhhcCCCEEEEEECCccCCCCCcccCc--cHHHHHHHcc
Confidence 35567777764 2 3566666766542 2233446778899999999998777521 2343322 2333332222
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
-|+.++.-. |+.+.+..++.|++. ++|++|-.
T Consensus 447 P~l~v~~P~--d~~e~~~~~~~a~~~----~~Pv~i~~ 478 (629)
T 2o1x_A 447 PGVRIGLPK--DAAELRGMLKYAQTH----DGPFAIRY 478 (629)
T ss_dssp TTCEEECCS--SHHHHHHHHHHHHHS----SSCEEEEC
T ss_pred CCcEEEecC--CHHHHHHHHHHHHhC----CCCEEEEe
Confidence 477777655 999999999999874 68998854
|
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=89.45 E-value=0.54 Score=48.31 Aligned_cols=109 Identities=10% Similarity=0.078 Sum_probs=66.4
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|..-++|||+|.-+-....... ......|....++.+--
T Consensus 63 ~aAdGyAr~t---G~pgv~~~TsGpG~~N---~~~gia~A~~d~vPll~itG~~p~~~~g~--~~~Qe~d~~~~~~~~tk 134 (578)
T 3lq1_A 63 FFALGLAKAS---KRPVVLLCTSGTAAAN---YFPAVAEANLSQIPLIVLTADRPHELRNV--GAPQAMDQLHLYGSHVK 134 (578)
T ss_dssp HHHHHHHHHH---CCCEEEEECSSHHHHT---THHHHHHHHHTTCCEEEEEEECCGGGTTS--SCTTCCCCTTTTGGGSS
T ss_pred HHHHHHHHhh---CCCEEEEECCchhhhh---hhHHHHHHHhcCCCeEEEeCCCCHHhhcC--CCCCCcCHhhHHhhhee
Confidence 3566777653 4556777778888887 34567778889999999986543221111 11111244455555544
Q ss_pred eEEEEe-CCCHHH----HHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 230 RSIRVD-GNDALA----IYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 230 ~~~~Vd-G~D~~a----v~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
....|. ..+..+ +..++++|+..++.+ .||+.|++-.
T Consensus 135 ~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~ 177 (578)
T 3lq1_A 135 DFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPL 177 (578)
T ss_dssp EEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEC
T ss_pred eEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECcc
Confidence 455554 344332 445677777776665 6999999864
|
| >1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=89.30 E-value=1.6 Score=45.88 Aligned_cols=101 Identities=13% Similarity=0.025 Sum_probs=65.5
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce--eeecccccCCcCHHHHHhh
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i--~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. |.-++++.++..-+. ..++++..++..++|+++++...+++. .++++ .+..+++-...-
T Consensus 415 ~~~a~GlA~~----GG~~P~~~~~~~F~~---~~~~~ir~~a~~~~pvv~~~t~~g~g~G~dG~tH--q~~edla~lr~i 485 (673)
T 1r9j_A 415 CAILNGLDAH----DGIIPFGGTFLNFIG---YALGAVRLAAISHHRVIYVATHDSIGVGEDGPTH--QPVELVAALRAM 485 (673)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGGG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHHS
T ss_pred HHHHHHHHhc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEECCccCcCCCCccc--CCHHHHHHHcCC
Confidence 4467777664 323455555533332 345668889999999999987777654 34444 234445444333
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
-|+.++.- -|+.++..+++.|++. .++|++|-
T Consensus 486 P~l~V~~P--ad~~e~~~~l~~a~~~---~~~Pv~i~ 517 (673)
T 1r9j_A 486 PNLQVIRP--SDQTETSGAWAVALSS---IHTPTVLC 517 (673)
T ss_dssp TTCEEECC--SSHHHHHHHHHHHHHC---TTCCEEEE
T ss_pred CCCEEEeC--CCHHHHHHHHHHHHHh---CCCeEEEE
Confidence 47766654 4899999999999863 37899884
|
| >3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=89.08 E-value=1.5 Score=46.31 Aligned_cols=101 Identities=12% Similarity=0.053 Sum_probs=63.9
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcc--eeeecccccCCcCHHHHHhh
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA--ISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~--i~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. +.-++++..+.. |.. ...-++.+++..++||+|+....+++ .+++++ .+..+++-...-
T Consensus 445 v~~A~GlA~~----gG~~Pv~~tF~~--F~d-~~~~~ir~~al~~lpvv~v~thdg~gvG~dG~TH--q~ied~a~lr~i 515 (700)
T 3rim_A 445 GAILSGIVLH----GPTRAYGGTFLQ--FSD-YMRPAVRLAALMDIDTIYVWTHDSIGLGEDGPTH--QPIEHLSALRAI 515 (700)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGG--GGG-GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--SCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEecHH--HHH-HHHHHHHHhcCCCCCEEEEEeCCCcccCCCCCcc--CChhHHHHHhcC
Confidence 4567777775 222344443321 111 12335778899999999999877765 345544 334555544444
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccC--CcEEEE
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEG--RPILIE 263 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~--gP~lIe 263 (380)
-|+.++.-- |..++..+++.|++. .+ +|++|-
T Consensus 516 Pnl~V~~Pa--d~~e~~~~l~~Ai~~---~~~~~Pv~ir 549 (700)
T 3rim_A 516 PRLSVVRPA--DANETAYAWRTILAR---RNGSGPVGLI 549 (700)
T ss_dssp TTCEEECCS--SHHHHHHHHHHHHTT---TTCSSCEEEE
T ss_pred CCCEEEeCC--CHHHHHHHHHHHHHc---cCCCCCEEEE
Confidence 477776644 899999999999864 44 799884
|
| >3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* | Back alignment and structure |
|---|
Probab=88.80 E-value=1.5 Score=46.36 Aligned_cols=100 Identities=15% Similarity=0.049 Sum_probs=65.0
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcc--eeeecccccCCcCHHHHHhh
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA--ISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~--i~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. +.-++++.++. .|.+ .....+..++..++||+|+....+++ .+++++ .+..+++-...-
T Consensus 461 v~~AaGlA~~----~G~~Pv~~~f~--~F~~-~~~~~ir~~a~~~lpv~~v~thdg~gvG~dG~TH--q~~ed~a~lr~i 531 (711)
T 3uk1_A 461 SAAINGLVLH----GGYKPFGGTFL--TFSD-YSRNALRVAALMKVPSIFVFTHDSIGLGEDGPTH--QSVEHVASLRLI 531 (711)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEG--GGHH-HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEEhH--HHHH-HHHHHHHHhhhcCCCEEEEEECCCcCcCCCCCcc--CChhHHHHHhcC
Confidence 5677888763 12344555542 3332 23566778889999999999877764 344544 234444444333
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
-|+.++.-- |..++..+++.|++ .++|++|-
T Consensus 532 Pnl~V~~Pa--d~~E~~~~l~~Ai~----~~~Pv~ir 562 (711)
T 3uk1_A 532 PNLDVWRPA--DTVETAVAWTYAVA----HQHPSCLI 562 (711)
T ss_dssp TTCEEECCS--SHHHHHHHHHHHHH----SSSCEEEE
T ss_pred CCCEEEecC--CHHHHHHHHHHHHh----cCCCEEEE
Confidence 477776644 89999999999986 47999883
|
| >1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 | Back alignment and structure |
|---|
Probab=88.52 E-value=1.1 Score=45.55 Aligned_cols=109 Identities=17% Similarity=0.064 Sum_probs=68.0
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeee---ccc---ccCCcCHHH
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP---ISD---QFRSDGAVV 222 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~---~~~---~~~~~~~~~ 222 (380)
.-+|.|.|.+. + ..++++..|=|.++ ..-++..|...++|||+|+-+-....... ... .....+..+
T Consensus 56 ~~~A~Gyar~t---g-~~v~~~tsGpG~~N---~~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q~~~~ 128 (552)
T 1ovm_A 56 SYAADGYARCK---G-FAALLTTFGVGELS---AMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYH 128 (552)
T ss_dssp HHHHHHHHHHH---S-CEEEEEETTHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHH
T ss_pred HHHHHHHHHhh---C-CcEEEEccCCcHHH---HHHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHHHHHH
Confidence 44677877764 3 34677778888765 34467778889999999987654322110 000 001123556
Q ss_pred HHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
.++.+--....+. + +.+...+.+|+..+..+.||+.|++-..
T Consensus 129 ~~~~~tk~~~~v~--~-~~~~~~i~~A~~~a~~~~GPV~l~iP~d 170 (552)
T 1ovm_A 129 MSEPITVAQAVLT--E-QNACYEIDRVLTTMLRERRPGYLMLPAD 170 (552)
T ss_dssp HTGGGCSEEEECC--T-TTHHHHHHHHHHHHHHHTCCEEEEEEHH
T ss_pred HHHhheeEEEEEc--c-ccHHHHHHHHHHHHHhCCCCEEEEeehh
Confidence 7777777777776 4 4555566666655555569999998653
|
| >1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* | Back alignment and structure |
|---|
Probab=85.70 E-value=4.1 Score=38.50 Aligned_cols=98 Identities=15% Similarity=0.077 Sum_probs=61.2
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEE-eCccccCcchHHHHHH-HHHH--------cCCCEEEEEEcCCcceeeecccccCC
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAALN-FSAV--------TEAPVIFICRNNGWAISTPISDQFRS 217 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~-~GDG~~~eG~~~Eal~-~A~~--------~~Lpvi~vv~NN~~~i~~~~~~~~~~ 217 (380)
.+++|.|+|++ | -++++++ +++.. + ..++.+. .++. .++|+|+++. .++........+ .
T Consensus 63 ~v~~a~G~A~~----G-~~p~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~hs--~ 131 (324)
T 1umd_B 63 IVGAALGMAAH----G-LRPVAEIQFADYI-F--PGFDQLVSQVAKLRYRSGGQFTAPLVVRMP-SGGGVRGGHHHS--Q 131 (324)
T ss_dssp HHHHHHHHHHH----T-CEEEEECSSGGGC-G--GGHHHHHHTTTTHHHHTTTSSCCCCEEEEE-ECSSSSCGGGSS--C
T ss_pred HHHHHHHHHHC----C-CEEEEEeccHhHH-H--HHHHHHHHHHHHHHhhcCCCCcCCEEEEEc-CCCCCCCCCccc--h
Confidence 35678888776 2 2344443 88875 2 3455553 3443 6889999987 344333322222 2
Q ss_pred cCHHHHHhhc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 218 DGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 218 ~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
.+. ...+.+ |+.++.-. |+.+.+..++.|++ .++|++|-
T Consensus 132 ~~~-a~~~~iP~~~V~~P~--d~~e~~~~l~~a~~----~~~Pv~i~ 171 (324)
T 1umd_B 132 SPE-AHFVHTAGLKVVAVS--TPYDAKGLLKAAIR----DEDPVVFL 171 (324)
T ss_dssp CCH-HHHHTSTTCEEEECC--SHHHHHHHHHHHHH----CSSCEEEE
T ss_pred hHH-HHHhcCCCCEEEEeC--CHHHHHHHHHHHHh----cCCCEEEE
Confidence 344 444444 77777655 99999999999986 47899884
|
| >1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* | Back alignment and structure |
|---|
Probab=84.12 E-value=2.6 Score=39.91 Aligned_cols=98 Identities=13% Similarity=0.041 Sum_probs=60.4
Q ss_pred CccHHHHHHHHHhhhcCCCceeEE-E-eCccccCcchHHHHHH-HHHH--------cCCCEEEEEEcCCcceeeeccccc
Q 016909 147 TQLPHAVGAAYALKMDRKDACAVT-Y-FGDGGTSEGDFHAALN-FSAV--------TEAPVIFICRNNGWAISTPISDQF 215 (380)
Q Consensus 147 ~~~p~AvG~A~A~k~~~~~~~vv~-~-~GDG~~~eG~~~Eal~-~A~~--------~~Lpvi~vv~NN~~~i~~~~~~~~ 215 (380)
+.+++|.|+|++ | .++++ + ++++.. ..++.+. .++. .++|+|+++. .++....... +
T Consensus 61 ~~v~~a~G~A~~----G--~rp~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~--h 128 (324)
T 1w85_B 61 GIGGLAIGLALQ----G--FRPVPEIQFFGFVY---EVMDSICGQMARIRYRTGGRYHMPITIRSP-FGGGVHTPEL--H 128 (324)
T ss_dssp HHHHHHHHHHHT----T--CEEEEBCSSGGGGG---GTHHHHHTTGGGHHHHTTTSSCCCCEEEEE-ECSSSCCCTT--S
T ss_pred HHHHHHHHHHhC----C--CEEEEEecchhHHH---HHHHHHHHHHHHHhhhccCCCcCCEEEEEe-ccCCCCCCCc--c
Confidence 345677777775 2 34444 3 787762 3445553 2443 7899999987 3443333222 2
Q ss_pred CCcCHHHHHhhc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 216 RSDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 216 ~~~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
+..+. ....+. ||.++.-. |+.+.+..++.|++ .++|++|-
T Consensus 129 s~~~~-a~~~~iP~l~V~~Ps--d~~e~~~~l~~a~~----~~~Pv~i~ 170 (324)
T 1w85_B 129 SDSLE-GLVAQQPGLKVVIPS--TPYDAKGLLISAIR----DNDPVIFL 170 (324)
T ss_dssp SCCCH-HHHTTSTTCEEECCS--SHHHHHHHHHHHHH----SSSCEEEE
T ss_pred cccHH-HHHccCCCCEEEeeC--CHHHHHHHHHHHHH----cCCCEEEE
Confidence 22344 444443 67666654 99999999999986 47899885
|
| >2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... | Back alignment and structure |
|---|
Probab=82.21 E-value=3.5 Score=39.43 Aligned_cols=100 Identities=8% Similarity=0.001 Sum_probs=61.5
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEE-eCccccCcchHHHHHH-HHHHc--------CC-CEEEEEEcCCcceeeecccccC
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAALN-FSAVT--------EA-PVIFICRNNGWAISTPISDQFR 216 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~-~GDG~~~eG~~~Eal~-~A~~~--------~L-pvi~vv~NN~~~i~~~~~~~~~ 216 (380)
.+++|.|+|++ | -++++.+ ++++.. ..++.+. .++.+ ++ ||++++..-+. ..++++. +
T Consensus 79 ~v~~a~G~A~~----G-~rp~~~~tf~~F~~---~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~-~~G~th~--~ 147 (342)
T 2bfd_B 79 IVGFGIGIAVT----G-ATAIAEIQFADYIF---PAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCV-GHGALYH--S 147 (342)
T ss_dssp HHHHHHHHHHT----T-CCEEEECSSGGGCG---GGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCC-SSCGGGS--S
T ss_pred HHHHHHHHHHC----C-CeeEEEecchhHHH---HHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCC-CCCcchh--h
Confidence 36677787775 2 2344433 888853 3445543 44443 44 99999876543 3444433 3
Q ss_pred CcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 217 SDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 217 ~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
..+++-...--||.++.-. |+.+.+..++.|+++ ++|++|-.
T Consensus 148 ~~d~~~l~~iP~l~V~~Ps--d~~e~~~~l~~a~~~----~~Pv~i~~ 189 (342)
T 2bfd_B 148 QSPEAFFAHCPGIKVVIPR--SPFQAKGLLLSCIED----KNPCIFFE 189 (342)
T ss_dssp CCCHHHHHTSTTCEEECCS--SHHHHHHHHHHHHHS----SSCEEEEE
T ss_pred HhHHHHHhcCCCcEEEeeC--CHHHHHHHHHHHHhc----CCcEEEEe
Confidence 3455433332377777655 999999999999863 78999844
|
| >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* | Back alignment and structure |
|---|
Probab=81.04 E-value=2.3 Score=43.30 Aligned_cols=107 Identities=14% Similarity=0.026 Sum_probs=65.8
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|..-++|||+|.-+-..........| ..|....++.+--
T Consensus 60 ~~AdGyAr~t---G~pgv~~~TsGpG~~N---~~~gia~A~~d~vPll~itG~~~~~~~g~~~~Q--~~d~~~~~~~~tk 131 (556)
T 3hww_A 60 HLALGLAKVS---KQPVAVIVTSGTAVAN---LYPALIEAGLTGEKLILLTADRPPELIDCGANQ--AIRQPGMFASHPT 131 (556)
T ss_dssp HHHHHHHHHH---CSCEEEEECSSHHHHT---THHHHHHHHHHCCCEEEEEEECCGGGSSSSCTT--CCCCTTTTTTCSS
T ss_pred HHHHHHHHhh---CCCEEEEECCCcHHHh---hhHHHHHHHHhCCCeEEEeCCCCHHHhccCCCc--cccHHHHHhhhee
Confidence 3566776553 4556777788989887 345677788899999999865543322111111 1234445555544
Q ss_pred eEEEEe-CC---CHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 230 RSIRVD-GN---DALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 230 ~~~~Vd-G~---D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
....+. .. ....+.+++++|+.. ...||+.|++-.
T Consensus 132 ~~~~v~~~~~~~~~~~i~~~i~~A~~~--~r~GPV~i~iP~ 170 (556)
T 3hww_A 132 HSISLPRPTQDIPARWLVSTIDHALGT--LHAGGVHINCPF 170 (556)
T ss_dssp EEEECCCCCTTSCHHHHHHHHHHHHHS--CCSSCEEEEEEC
T ss_pred EEEecCCCcccccHHHHHHHHHHHHhc--CCCCCEEEeCCc
Confidence 455553 22 235588888888832 335899999864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 380 | ||||
| d2bfda1 | 395 | c.36.1.11 (A:6-400) Branched-chain alpha-keto acid | 2e-94 | |
| d1w85a_ | 365 | c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, Pd | 1e-80 | |
| d1qs0a_ | 407 | c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B | 4e-76 | |
| d1umda_ | 362 | c.36.1.11 (A:) Branched-chain alpha-keto acid dehy | 1e-72 | |
| d2ozla1 | 361 | c.36.1.11 (A:1-361) E1-beta subunit of pyruvate de | 3e-69 |
| >d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} Length = 395 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Human (Homo sapiens) [TaxId: 9606]
Score = 285 bits (731), Expect = 2e-94
Identities = 177/377 (46%), Positives = 247/377 (65%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 15 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 74
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE ++ SAAA+ N D V Q RE GVL++R + ++ F QC+GN +D
Sbjct: 75 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISD 134
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 135 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 194
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 195 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 254
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GH +TSDDS+ +R VDE+ +W P++R
Sbjct: 255 AVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRL 314
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R R++++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 315 RHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 374
Query: 361 HSLRETIKKHPQDYPSN 377
SL ++ + + YP +
Sbjct: 375 ESLARHLQTYGEHYPLD 391
|
| >d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} Length = 365 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Pyruvate dehydrogenase E1-alpha, PdhA species: Bacillus stearothermophilus [TaxId: 1422]
Score = 249 bits (636), Expect = 1e-80
Identities = 124/365 (33%), Positives = 200/365 (54%), Gaps = 11/365 (3%)
Query: 6 ESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS 65
E E+ P +++L+++G+ + + ++S+ ++ MV + +D RQGR+
Sbjct: 11 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 70
Query: 66 FYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGR 125
FY T+G+EA IAS A++ +DF++P YR+ ++W G + + G+
Sbjct: 71 FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPLYQAFLFSRGHFHGNQIPE 130
Query: 126 QMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAA 185
+ + I Q A G A LKM K A A+TY GDGGTS+GDF+
Sbjct: 131 GVNVLPPQ---------IIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 181
Query: 186 LNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSA 245
+NF+ +AP IF+ +NN +AISTP+ Q + K A G+ I+VDG D LA+Y+A
Sbjct: 182 INFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAA 241
Query: 246 VHAAREMAIGEGRPILIEALTYRVGHHTTSDD-STKYRPVDEIEWWRTTQDPVTRFRKWI 304
V AARE AI P LIE L +R G HT S D T+YR + W +DP+ RFRK++
Sbjct: 242 VKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAK-KDPLVRFRKFL 300
Query: 305 ESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLR 364
E+ G W+ + E+ + +++I A+++A++ K ++DL + +++ P NL+EQ +
Sbjct: 301 EAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYK 360
Query: 365 ETIKK 369
E K
Sbjct: 361 EKESK 365
|
| >d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} Length = 407 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: 2-oxoisovalerate dehydrogenase (E1B), PP module species: Pseudomonas putida [TaxId: 303]
Score = 238 bits (609), Expect = 4e-76
Identities = 126/366 (34%), Positives = 183/366 (50%), Gaps = 9/366 (2%)
Query: 5 SESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI 64
+++++ RVLD+ G + + + M+ + D+ AQRQ ++
Sbjct: 44 ADTADLSYSLVRVLDEQGDA-QGPWAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKM 102
Query: 65 SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKG 124
SFY+ + GEEAI A A+ D P YR+ +L+ R S+ E Q N+ D KG
Sbjct: 103 SFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKG 162
Query: 125 RQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHA 184
RQ+PI Y + +FT+S +ATQ AVG A A + A + GDG T+E DFH
Sbjct: 163 RQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHT 222
Query: 185 ALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVV-KGRAYGVRSIRVDGNDALAIY 243
AL F+ V APVI NN WAIST + +G G+ S+RVDGND +A+Y
Sbjct: 223 ALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVY 282
Query: 244 SAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKW 303
+A A E A P LIE +TYR G H+TSDD +KYRP D+ + DP+ R ++
Sbjct: 283 AASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFP-LGDPIARLKQH 341
Query: 304 IESNGWWNGDIESELRSSVRKQILHALQEAEK------AEKPPISDLFTDVYDVSPSNLR 357
+ G W+ + + ++ A +EAE+ P + +F DVY P +LR
Sbjct: 342 LIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLANGHIPSAASMFEDVYKEMPDHLR 401
Query: 358 EQEHSL 363
Q L
Sbjct: 402 RQRQEL 407
|
| >d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Thermus thermophilus [TaxId: 274]
Score = 228 bits (582), Expect = 1e-72
Identities = 137/354 (38%), Positives = 202/354 (57%), Gaps = 3/354 (0%)
Query: 15 YRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEE 74
R++ ++G+ D + + ++Y DM+ + +D + R G+ SF +G E
Sbjct: 11 IRLIGEEGEWLGDFP-LDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHE 69
Query: 75 AINIASAAAIKND-DFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGS 133
A +A A AI+ D+V P YR+ G+ L G ++E Q KAD KGRQMP H GS
Sbjct: 70 AAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGS 129
Query: 134 NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE 193
N+FTV+S IA+ +P A GAA ++K+ R AV FGDG TSEGD++A +NF+AV
Sbjct: 130 KALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQG 189
Query: 194 APVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMA 253
AP +FI NN +AIS Q S K A+G+ VDG D LA Y V A E A
Sbjct: 190 APAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERA 249
Query: 254 IGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGD 313
P L+E YR G H+++DD ++YRP +E+ +WR +DP+ RFR+++E+ G WN +
Sbjct: 250 RRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEE 308
Query: 314 IESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETI 367
E ++R +R ++ L+EAE+A P +F DV+ P +L QE L+E +
Sbjct: 309 WEEDVREEIRAELERGLKEAEEAGPVPPEWMFEDVFAEKPWHLLRQEALLKEEL 362
|
| >d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: E1-beta subunit of pyruvate dehydrogenase (PP module) species: Human (Homo sapiens) [TaxId: 9606]
Score = 220 bits (560), Expect = 3e-69
Identities = 97/364 (26%), Positives = 159/364 (43%), Gaps = 10/364 (2%)
Query: 3 FISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQG 62
F ++++ E C ++G P ++ +K Y M T++ M+ + +Q
Sbjct: 1 FANDATFEIKKCDLHRLEEGPPVT----TVLTREDGLKYYRMMQTVRRMELKADQLYKQK 56
Query: 63 RI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADY 121
I F G+EA + A I D ++ YR G RG S++E + G K
Sbjct: 57 IIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGC 116
Query: 122 GKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD 181
KG+ +H N++ + + Q+P G A A K + KD +T +GDG ++G
Sbjct: 117 AKGKGGSMHM--YAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQ 174
Query: 182 FHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALA 241
A N +A+ + P IFIC NN + + T + S R + +RVDG D L
Sbjct: 175 IFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTD--YYKRGDFIPGLRVDGMDILC 232
Query: 242 IYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFR 301
+ A A PIL+E TYR H SD YR +EI+ R+ DP+ +
Sbjct: 233 VREATRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLK 292
Query: 302 KWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVY-DVSPSNLREQE 360
+ ++ + + E+ VRK+I A Q A +PP+ +L +Y P +R
Sbjct: 293 DRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDPPFEVRGAN 352
Query: 361 HSLR 364
++
Sbjct: 353 QWIK 356
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 380 | |||
| d2bfda1 | 395 | Branched-chain alpha-keto acid dehydrogenase, PP m | 100.0 | |
| d1qs0a_ | 407 | 2-oxoisovalerate dehydrogenase (E1B), PP module {P | 100.0 | |
| d1umda_ | 362 | Branched-chain alpha-keto acid dehydrogenase, PP m | 100.0 | |
| d1w85a_ | 365 | Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st | 100.0 | |
| d2ozla1 | 361 | E1-beta subunit of pyruvate dehydrogenase (PP modu | 100.0 | |
| d2r8oa2 | 331 | Transketolase (TK), PP module {Escherichia coli [T | 99.95 | |
| d1r9ja2 | 336 | Transketolase (TK), PP module {Leishmania mexicana | 99.94 | |
| d1gpua1 | 335 | Transketolase (TK), PP module {Baker's yeast (Sacc | 99.94 | |
| d1itza1 | 338 | Transketolase (TK), PP module {Maize (Zea mays) [T | 99.93 | |
| d2ieaa2 | 415 | Pyruvate dehydrogenase E1 component, PP module {Es | 99.8 | |
| d2djia3 | 229 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 99.77 | |
| d2ez9a3 | 228 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 99.73 | |
| d1q6za3 | 183 | Benzoylformate decarboxylase {Pseudomonas putida [ | 99.72 | |
| d2ihta3 | 198 | Carboxyethylarginine synthase {Streptomyces clavul | 99.71 | |
| d1ybha3 | 208 | Acetohydroxyacid synthase catalytic subunit {Thale | 99.7 | |
| d1ozha3 | 192 | Catabolic acetolactate synthase {Klebsiella pneumo | 99.67 | |
| d1t9ba3 | 227 | Acetohydroxyacid synthase catalytic subunit {Baker | 99.66 | |
| d1pvda3 | 196 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 99.65 | |
| d1zpda3 | 204 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 99.64 | |
| d2ji7a3 | 183 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 99.64 | |
| d1ovma3 | 196 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 99.62 | |
| d2c42a2 | 447 | Pyruvate-ferredoxin oxidoreductase, PFOR, domains | 98.14 | |
| d2ji7a2 | 188 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 96.27 | |
| d2djia2 | 184 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 96.23 | |
| d1zpda2 | 186 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 96.19 | |
| d1ozha2 | 181 | Catabolic acetolactate synthase {Klebsiella pneumo | 96.13 | |
| d1pvda2 | 180 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 95.96 | |
| d1t9ba2 | 175 | Acetohydroxyacid synthase catalytic subunit {Baker | 95.84 | |
| d2ez9a2 | 174 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 95.76 | |
| d2ihta2 | 186 | Carboxyethylarginine synthase {Streptomyces clavul | 95.55 | |
| d1ybha2 | 195 | Acetohydroxyacid synthase catalytic subunit {Thale | 95.51 | |
| d2c42a1 | 257 | Pyruvate-ferredoxin oxidoreductase, PFOR, domain I | 95.01 | |
| d1q6za2 | 180 | Benzoylformate decarboxylase {Pseudomonas putida [ | 94.37 | |
| d1r9ja1 | 190 | Transketolase (TK), Pyr module {Leishmania mexican | 93.74 | |
| d2r8oa1 | 195 | Transketolase (TK), Pyr module {Escherichia coli [ | 92.91 | |
| d1gpua2 | 197 | Transketolase (TK), Pyr module {Baker's yeast (Sac | 92.78 | |
| d1ovma2 | 178 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 90.22 | |
| d2ozlb1 | 192 | E1-beta subunit of pyruvate dehydrogenase, Pyr mod | 89.96 | |
| d1itza2 | 192 | Transketolase (TK), Pyr module {Maize (Zea mays) [ | 89.57 | |
| d1qs0b1 | 204 | 2-oxoisovalerate dehydrogenase (E1B), Pyr module { | 88.21 | |
| d2bfdb1 | 203 | Branched-chain alpha-keto acid dehydrogenase, Pyr | 85.98 | |
| d1ik6a1 | 191 | E1-beta subunit of pyruvate dehydrogenase, Pyr mod | 81.55 | |
| d1w85b1 | 192 | Pyruvate dehydrogenase E1-beta, PdhB, N-terminal d | 80.79 |
| >d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.2e-95 Score=720.44 Aligned_cols=378 Identities=47% Similarity=0.868 Sum_probs=349.4
Q ss_pred CccccCCCCCCCCeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHH
Q 016909 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIAS 80 (380)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~ 80 (380)
++|+++......|.+||||.||+++++...+.||+|+++++||.|+++|.||+++..++++|++++++++.||||+++|+
T Consensus 15 ~~~~~~~~~~~~p~~r~ld~~g~~~~~~~~~~ls~e~l~~~Yr~M~~~R~~e~~~~~l~~~G~i~~~~~~~GqEA~~vg~ 94 (395)
T d2bfda1 15 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGS 94 (395)
T ss_dssp CCCCCCCCSSCSCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTCHHHHHHH
T ss_pred cccCCCccCCCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHH
Confidence 46888888888999999999999999888899999999999999999999999999999999999888899999999999
Q ss_pred HhcCCCCcEEEccccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhh
Q 016909 81 AAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 81 ~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k 160 (380)
+.+|+++||++++||+|++++++|++++.+|++++|+.+|+|+|+++++|+++++.++++.++++|+++|+|+|+|+|.|
T Consensus 95 ~~al~~~D~~~~~yR~h~~~la~G~~~~~~~ael~g~~~g~~~Grggs~H~~~~~~~~~~~~~ivg~~~p~A~G~A~a~k 174 (395)
T d2bfda1 95 AAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 174 (395)
T ss_dssp HHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHHH
T ss_pred HHHcCCCCeeccccchhHhhhhhhCCHHHHHHHHhhcccCccccccccccccccccccccccccccccccHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHH
Q 016909 161 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240 (380)
Q Consensus 161 ~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~ 240 (380)
+++.+++++|++|||++++|.|||+||+|+.|+|||||||+||+|+++++...+++..++++++++||+++++|||+|+.
T Consensus 175 ~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~yaist~~~~~~~~~~i~~ra~~~gi~~~~vDG~Dv~ 254 (395)
T d2bfda1 175 RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 254 (395)
T ss_dssp HHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGGTCEEEEEETTCHH
T ss_pred hcCcccccccccCCCCccchhHHHHHHHHhhcCCceEEEEEecccccccccchhhcchhHHHhhhccccceeEEecCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCC-hHHHHHHHHHHCCCCCHHHHHHHH
Q 016909 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQD-PVTRFRKWIESNGWWNGDIESELR 319 (380)
Q Consensus 241 av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~D-Pi~~~~~~L~~~g~~t~~~~~~i~ 319 (380)
+|++++++|++++|+++||+|||+.|||++||+.+||+..||+++|++.|++ +| ||.+++++|+++|++|++++++|+
T Consensus 255 aV~~a~~~A~~~~R~g~gP~lIE~~TyR~~~Hs~~DD~~~YR~~~Ei~~w~k-~DdPi~~~~~~Li~~g~~s~ee~~~i~ 333 (395)
T d2bfda1 255 AVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDK-QDHPISRLRHYLLSQGWWDEEQEKAWR 333 (395)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC--------------------CCHHHHHHHHHTTTTCCCHHHHHHHH
T ss_pred HHHHHHHHhhhhhhccCCceEEEEeeecCCCCCCcCCcccccCHHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999984 65 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCccccccccCCCccHHHHHHHHHHHHHhCCCCCCCCCC
Q 016909 320 SSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSNVP 379 (380)
Q Consensus 320 ~~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~ 379 (380)
++++++|++|+++|+++|.|+++++|+|||+++|+++++|++.+++.++++|+.||+.+|
T Consensus 334 ~e~~~eV~~A~~~A~~~p~P~~~~l~~~VYae~p~~l~eq~~~~~~~~~~~~e~~~~~~~ 393 (395)
T d2bfda1 334 KQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHF 393 (395)
T ss_dssp HHHHHHHHHHHHHHHHSCBCCGGGGSTTSSSSCCHHHHHHHHHHHHHHHHHGGGSCGGGB
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHhCcccCChhhh
Confidence 999999999999999999999999999999999999999999999999999999999887
|
| >d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: 2-oxoisovalerate dehydrogenase (E1B), PP module species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=1.4e-90 Score=689.29 Aligned_cols=350 Identities=36% Similarity=0.554 Sum_probs=337.9
Q ss_pred CCeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCCCCcEEE
Q 016909 12 IPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVV 91 (380)
Q Consensus 12 ~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~~~D~v~ 91 (380)
.+.+||||.||++++++ .++||+|+|+++||.|+++|.||+++..+++||+++||++++||||+++|++.+|+++||+|
T Consensus 51 ~~~vrvld~~g~~~~~~-~~~l~~e~l~~~yr~M~~~R~~d~~~~~l~rqG~i~~~~~~~GqEA~~vg~~~aL~~~D~~f 129 (407)
T d1qs0a_ 51 YSLVRVLDEQGDAQGPW-AEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMCF 129 (407)
T ss_dssp TSCBCCBCTTSCBCSGG-GSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHSCTTSEEE
T ss_pred cCeEEEECCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCChHHHHHHHHHhCCCCCEEE
Confidence 46899999999998875 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEE
Q 016909 92 PQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTY 171 (380)
Q Consensus 92 ~~yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~ 171 (380)
++||+|++++++|+++.++|++++|+.+|+++|+++++|+++++.|+++.++++|+++|+|+|+|+|.|+++.+.+++|+
T Consensus 130 ~~yR~~g~~larG~~~~~~~~e~~g~~~g~~~Gr~~~~h~~~~~~~~~~~s~~vg~q~p~AvG~A~a~k~~~~~~v~v~~ 209 (407)
T d1qs0a_ 130 PTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAW 209 (407)
T ss_dssp CCSSCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred ecccCHHHHHHHHhhHHHHHHHHhhccCCCCCCCCccccccccccceeccccccccccchhhhhHHHHhhccCcceeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccC-CcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHH
Q 016909 172 FGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAR 250 (380)
Q Consensus 172 ~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~-~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~ 250 (380)
+|||+++||.|||+||+|+.|+|||||||+||+|+|+|+...+.. ..++++++++||+++++|||||+.+|++++++|+
T Consensus 210 ~GDGa~~eG~f~EalN~A~~~~lPvifv~eNN~~aist~~~~~~~~~~~~~~ra~~~Gi~~~~VDGnD~~avy~a~~~A~ 289 (407)
T d1qs0a_ 210 IGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAA 289 (407)
T ss_dssp EETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHhccCcceEEEEEEecccccccchhhhccchhHHHHHHhcCcceEEeccccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999876554 5679999999999999999999999999999999
Q ss_pred HHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q 016909 251 EMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHAL 330 (380)
Q Consensus 251 ~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~ 330 (380)
+++|+++||+|||++|||++|||++||+..||+++|++.|+ ++|||.+++++|+++|+||++++++|+++++++|++|+
T Consensus 290 e~aR~g~gP~lIE~~TyR~~gHs~sDD~~~YR~~~E~~~w~-~~DPI~rl~~~Li~~g~~se~e~~~i~~ei~~eV~~A~ 368 (407)
T d1qs0a_ 290 ERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFP-LGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQ 368 (407)
T ss_dssp HHHHTTSCCEEEEEECCCCSCSSTTCCGGGTSCTTHHHHCT-TCCHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCceEEEEeeecCCCCCccccccccCCHHHHHHHH-hCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997 69999999999999999999999999999999999999
Q ss_pred HHHHh------CCCCCCCccccccccCCCccHHHHHHHH
Q 016909 331 QEAEK------AEKPPISDLFTDVYDVSPSNLREQEHSL 363 (380)
Q Consensus 331 ~~a~~------~~~p~~~~~~~~vy~~~~~~~~~~~~~l 363 (380)
++|++ +|.|+++++|+|||+++||++++|+++|
T Consensus 369 ~~Ae~~~~~~~~p~P~~~~lf~~VY~e~p~~l~eQ~~el 407 (407)
T d1qs0a_ 369 KEAEQYGTLANGHIPSAASMFEDVYKEMPDHLRRQRQEL 407 (407)
T ss_dssp HHHHTTCCSSSCCCCCSSGGGSSSSSSCCHHHHHHHHTC
T ss_pred HHHHHhhhcccCCCcCHHHHHhhhccCCCHHHHHHHHhC
Confidence 99986 5889999999999999999999998764
|
| >d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.8e-89 Score=674.81 Aligned_cols=352 Identities=39% Similarity=0.636 Sum_probs=343.3
Q ss_pred CeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCCCC-cEEE
Q 016909 13 PCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKND-DFVV 91 (380)
Q Consensus 13 ~~~~~~~~~g~~~~~~~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~~~-D~v~ 91 (380)
+.+|+||++|+++.+. .++||+|+|+++||.|+++|.||+++..++++|+++|+|+++||||+++|++.+|+++ |+++
T Consensus 9 ~~~r~l~~~g~~~~~~-~~~ls~e~l~~~yr~M~~~R~~ee~~~~l~~~g~~~~~~~~~GqEA~~vg~~~al~~~~D~~~ 87 (362)
T d1umda_ 9 EPIRLIGEEGEWLGDF-PLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVF 87 (362)
T ss_dssp SCBCCBCTTSCBCCSS-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTSEEE
T ss_pred CceEEECCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcceeeCCCCHHHHHHHHHHHcCCCCCeEE
Confidence 4599999999998764 7889999999999999999999999999999999999999999999999999999986 9999
Q ss_pred ccccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEE
Q 016909 92 PQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTY 171 (380)
Q Consensus 92 ~~yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~ 171 (380)
++||+|++++++|.++.++|++++|+.+|+++|+++++|+.+++.++++.++++|+++|+|+|+|+|.|+++.+.+++|+
T Consensus 88 ~~yR~h~~~la~G~~~~~~~ae~~gk~~g~~~Grggs~H~~~~~~~~~~~~~ivg~~~p~a~G~A~a~k~~~~~~v~v~~ 167 (362)
T d1umda_ 88 PYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCT 167 (362)
T ss_dssp CCTTTHHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred eccccHHHHHHHHhhHHHHHHHHhcccCCCcccccccccccccccCcccccccccccchHHHHHHHhhhcccccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHH
Q 016909 172 FGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAARE 251 (380)
Q Consensus 172 ~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~ 251 (380)
+|||+++||.|||+||+|+.|+||+||||+||+|++++++..+++..++.+++.+||+++++|||+|+.+|++++++|++
T Consensus 168 ~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~~aist~~~~~~~~~~~~~~a~~~gi~~~~vDGnDv~~v~~a~~~Ai~ 247 (362)
T d1umda_ 168 FGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVE 247 (362)
T ss_dssp EETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHHH
T ss_pred ccCCcccCCchHHHHHHhhhccCCeeeeeeecccccccccccccccchhhhhhhhheeeeeEeccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred HhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q 016909 252 MAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQ 331 (380)
Q Consensus 252 ~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~ 331 (380)
++|+++||+|||++|||++||+.+|++..||+++|++.|+ ++|||.+++++|+++|++|++++++|+++++++|+++++
T Consensus 248 ~~R~g~gP~lIE~~tyR~~gHs~~Dd~~~YR~~~Ei~~w~-~~DPi~~~~~~L~~~g~~se~e~~~i~~ei~~~V~~a~~ 326 (362)
T d1umda_ 248 RARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLK 326 (362)
T ss_dssp HHHTTCCCEEEEEECCCCSCSSTTCCGGGTSCHHHHHHHH-TTCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCEEEEcccccccCCCccccchhhcchhhhHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988999999999998 699999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCccccccccCCCccHHHHHHHHHHH
Q 016909 332 EAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRET 366 (380)
Q Consensus 332 ~a~~~~~p~~~~~~~~vy~~~~~~~~~~~~~l~~~ 366 (380)
+|+++|.|+++++++|||+++||++.+|++.|.+.
T Consensus 327 ~A~~~p~P~~~~l~~~VY~~~~~~l~~q~~~~~~~ 361 (362)
T d1umda_ 327 EAEEAGPVPPEWMFEDVFAEKPWHLLRQEALLKEE 361 (362)
T ss_dssp HHHHTCBCCGGGGGTTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHhcccCCCChhHHHHHHHHHhh
Confidence 99999999999999999999999999999998875
|
| >d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Pyruvate dehydrogenase E1-alpha, PdhA species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=1.2e-86 Score=654.62 Aligned_cols=348 Identities=35% Similarity=0.599 Sum_probs=326.6
Q ss_pred CCCCeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCCCCcE
Q 016909 10 ERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDF 89 (380)
Q Consensus 10 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~~~D~ 89 (380)
+.+|++||||.||+++++...+++|+|+|+++||.|+++|.||+++..+++||+++|+|++.||||+++|++.+|+++||
T Consensus 15 ~~~~~~~~l~~~g~~~~~~~~p~ls~e~l~~~yr~M~l~R~~e~~~~~l~~qG~ig~~h~~~GqEa~~vg~~~~l~~~D~ 94 (365)
T d1w85a_ 15 EQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDF 94 (365)
T ss_dssp HTCCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHHHHHHHHHTCCTTCE
T ss_pred ccCCeEEEECCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCCChHHHHHHHHHhCCCcCE
Confidence 46899999999999999887889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeE
Q 016909 90 VVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAV 169 (380)
Q Consensus 90 v~~~yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv 169 (380)
++++||+|+++|++|+++.++|++++|+..+.+.| +..++++.++++|+++|+|+|+|+|.|+++.+++++
T Consensus 95 i~~~yR~hg~~la~G~~~~~~~~~~~G~~~g~~~~---------~~~~~~~~~~ivG~~~p~AvG~A~a~k~~~~~~v~v 165 (365)
T d1w85a_ 95 ILPGYRDVPQIIWHGLPLYQAFLFSRGHFHGNQIP---------EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAI 165 (365)
T ss_dssp EECCSSCHHHHHHTTCCHHHHHHHHHTCGGGGCCC---------TTCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEE
T ss_pred eeecccchheeeecCCCHHHHHHhhCCCCCccCCC---------CCceeeccccccCccccchhhHHhhhhhcccCCcee
Confidence 99999999999999999999999999865443332 345677888999999999999999999999999999
Q ss_pred EEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHH
Q 016909 170 TYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAA 249 (380)
Q Consensus 170 ~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A 249 (380)
|++|||++++|.|||+||+|+.|+|||||||+||+|+++++...++...++++++.+||+++++|||+|+.+|++++++|
T Consensus 166 ~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~~aist~~~~~~~~~~~~~r~~~~Gi~~~~vDG~D~~~v~~a~~~A 245 (365)
T d1w85a_ 166 TYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAA 245 (365)
T ss_dssp EEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHH
T ss_pred eeccCCcccchhHHHHHHHhhhcccCceEEEEEecccccccccccccccchhhhcccccCceEEEecchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHHhhccCCcEEEEEEeecCCCCCCCCC-CCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 016909 250 REMAIGEGRPILIEALTYRVGHHTTSDD-STKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILH 328 (380)
Q Consensus 250 ~~~ar~~~gP~lIe~~t~R~~gHs~~Dd-~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~ 328 (380)
++++|+++||+|||++|||++|||++|| +..||+++|++.|+ ++|||.+++++|+++|++|++++++|+++++++|++
T Consensus 246 ~~~~R~g~gP~lie~~tyR~~gHs~~dd~~~~YR~~eEi~~w~-~~DPI~~~~~~L~~~g~~~~~el~~i~~e~~~eV~~ 324 (365)
T d1w85a_ 246 RERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWA-KKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKE 324 (365)
T ss_dssp HHHHHTTSCCEEEEEECCCSSCSCSSCC------CHHHHHHHH-TTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCccEEEEeecccccccCCcCCcccccCChHHHHHHH-hCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764 78999999999998 699999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCccccccccCCCccHHHHHHHHHHHH
Q 016909 329 ALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETI 367 (380)
Q Consensus 329 a~~~a~~~~~p~~~~~~~~vy~~~~~~~~~~~~~l~~~~ 367 (380)
|+++|+++|.|+++++|+|||+++||++++|++.+++..
T Consensus 325 A~~~A~~sP~P~~~~l~~~Vy~e~p~~l~eq~~~~~~~~ 363 (365)
T d1w85a_ 325 AIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYKEKE 363 (365)
T ss_dssp HHHHHHTSCCCCHHHHHHTSCSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCHHHHHhhhccCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998853
|
| >d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: E1-beta subunit of pyruvate dehydrogenase (PP module) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-81 Score=616.41 Aligned_cols=322 Identities=28% Similarity=0.432 Sum_probs=307.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhHHHHHHHHhcCCCCcEEEccccchHHHHHcCCCH
Q 016909 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSM 107 (380)
Q Consensus 29 ~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~ 107 (380)
....||+|+++++||.|+++|.||+++..+++||+| +|+|+++||||+++|++.+|+++||++++||+|+++|++|+++
T Consensus 23 ~~~~lske~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~h~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~ 102 (361)
T d2ozla1 23 VTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSV 102 (361)
T ss_dssp SEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcccccCCCCHHHHHHHHHHhCCccCEecccccchheeeeecccc
Confidence 346799999999999999999999999999999999 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHH
Q 016909 108 QEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN 187 (380)
Q Consensus 108 ~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~ 187 (380)
.++|++++|+.+|+++|+++++|... .++++.++++|+++|+|+|+|+|.|+++.+.+|+|++|||+++||.|||+||
T Consensus 103 ~~~~ae~~gk~~g~~~G~~~~~h~~~--~~~~~~~~ivg~~~p~A~G~A~a~k~~~~~~v~~~~~GDGa~~eG~f~Ealn 180 (361)
T d2ozla1 103 REILAELTGRKGGCAKGKGGSMHMYA--KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYN 180 (361)
T ss_dssp HHHHHHHTTCTTSTTTTSSCTTCCCB--TTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHH
T ss_pred hhhhhhccCCcccccccccccccccc--ccccCccccccccchhHHHHHHHhhhccCCCeEEEEecCCCccCcchhhhhh
Confidence 99999999999999999999999875 4889999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 188 FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 188 ~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
+|+.|+||+||||+||+|+++|+...+++..+..+ .++|+++++|||||+.+|++++++|++++|+++||+|||+.||
T Consensus 181 ~A~~~~lPvifv~eNN~yaist~~~~~~~~~~~~~--~~~~~~~~~vdGnD~~av~~a~~~A~~~~R~g~gP~liE~~Ty 258 (361)
T d2ozla1 181 MAALWKLPCIFICENNRYGMGTSVERAAASTDYYK--RGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTY 258 (361)
T ss_dssp HHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGG--TTTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECC
T ss_pred hhhhccCceEEEEEeCCcccCCCchhccccccccc--cccccceEEeccCCchHHHHHHHHHHHHHhccCCCEEEEEeee
Confidence 99999999999999999999999988877777655 4678999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccc
Q 016909 268 RVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTD 347 (380)
Q Consensus 268 R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~ 347 (380)
|++||+.+|++..||+++|++.|++++|||.+++++|+++|++|++++++|+++++++|++|+++|+++|.|+++++++|
T Consensus 259 R~~gHs~~D~~~~YR~~~Ei~~~~~k~DPi~~~~~~Li~~g~~se~e~~~i~~ei~~~V~~A~~~A~~sp~P~~~~l~~~ 338 (361)
T d2ozla1 259 RYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYH 338 (361)
T ss_dssp CSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHSCCCCGGGTTCS
T ss_pred cCCCCcccccccccCCHHHHHhhhhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhc
Confidence 99999999988899999999998655799999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCc
Q 016909 348 VYDVSPS 354 (380)
Q Consensus 348 vy~~~~~ 354 (380)
||++.|+
T Consensus 339 VYa~~~p 345 (361)
T d2ozla1 339 IYSSDPP 345 (361)
T ss_dssp SSSSCCC
T ss_pred ccCCCCh
Confidence 9998754
|
| >d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=9.8e-27 Score=224.44 Aligned_cols=179 Identities=25% Similarity=0.270 Sum_probs=148.4
Q ss_pred CcEEEcc--ccchH---HHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCcccccccccCccHHHHHHHHHh
Q 016909 87 DDFVVPQ--YREPG---VLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYAL 159 (380)
Q Consensus 87 ~D~v~~~--yR~~~---~~l~~G~-~~~~~l~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~~p~AvG~A~A~ 159 (380)
.|.++.+ |-..+ .+...|+ ...+.+..++. .|+.+++|+... .+++..++|+||+|+++|+|+|+|.
T Consensus 56 rDrfilSkGH~~~~~Ya~l~~~G~~~~~e~l~~f~~------~gs~~~ghp~~~~~~gve~stGsLG~Gl~~avG~Ala~ 129 (331)
T d2r8oa2 56 RDRFVLSNGHGSMLIYSLLHLTGYDLPMEELKNFRQ------LHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAE 129 (331)
T ss_dssp CCEEEESSGGGHHHHHHHHHHHTCSCCHHHHTTTTS------TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHH
T ss_pred CCeEEEeccchHHHHHHHHHHhCCCCCHHHHHhcCC------CCCCCCCCCCcCcCCCcccCcCchhhhhHHHHHHHHHH
Confidence 4755543 44433 3334784 55555666654 377788998753 5788899999999999999999999
Q ss_pred hhcC----------CCceeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 160 KMDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 160 k~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
|+.+ .++.|+|++|||+++||.+|||+++|+.++| ++|+|++||+++++++++... ..++.+++++||
T Consensus 130 k~~~~~~~~~~~~~~~~~v~~l~GDGel~EG~~wEA~~~A~~~kL~nLi~i~D~N~~~~~g~~~~~~-~~~~~~rf~afG 208 (331)
T d2r8oa2 130 KTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYG 208 (331)
T ss_dssp HHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTT
T ss_pred HHHhhhhccccccccCceEEEecccccccccchhHhhhhcchhcccceeeHHhhhhhcccccccccc-chhHHHHHHHcC
Confidence 8743 3678999999999999999999999999999 899999999999999987765 578999999999
Q ss_pred eeEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016909 229 VRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 229 ~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
|.++. +||||..++.+|+.+|... .++|++|.|+|....|.+..
T Consensus 209 w~vi~~~dghd~~~i~~A~~~a~~~---~~kP~~Ii~~TikGkG~~~~ 253 (331)
T d2r8oa2 209 WHVIRDIDGHDAASIKRAVEEARAV---TDKPSLLMCKTIIGFGSPNK 253 (331)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHC---CSSCEEEEEECCTTTTCTTT
T ss_pred CeeecccccchHHHHHHHHHHHHhh---cCCCccceeeeeeecCCccc
Confidence 99985 8999999999999887653 67999999999999998754
|
| >d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Leishmania mexicana mexicana [TaxId: 44270]
Probab=99.94 E-value=1.1e-25 Score=217.63 Aligned_cols=234 Identities=18% Similarity=0.143 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCC---------CCcEEEcc--ccchH---HHHHcCC-CHH
Q 016909 44 DMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQ--YREPG---VLLWRGF-SMQ 108 (380)
Q Consensus 44 ~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~---------~~D~v~~~--yR~~~---~~l~~G~-~~~ 108 (380)
..+|...+|. ......|.++...++. |.+.+-....|+ ..|.++.+ |-..+ .+...|+ ...
T Consensus 9 ~~iR~~~~~~--v~~a~sGH~G~~ls~a--~i~~~Ly~~~l~~~~~~p~~~~rDrfvlSkGH~~~~lYa~l~~~G~~~~~ 84 (336)
T d1r9ja2 9 NCIRCLAADI--VQGGKSGHPGTPMGMA--PMSAVLWTEVMKYNSQDPDWVDRDRFVMSNGHGCALQYALLHMAGYNLTM 84 (336)
T ss_dssp HHHHHHHHHH--HHHHTCSCCHHHHHTH--HHHHHHHHTTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSCCH
T ss_pred HHHHHHHHHH--HHHcCCCChhHHHHHH--HHHHHHHHHHhccCCCCCCCCCCCeEEEeCCccchHHHHHHHHcCCCCcH
Confidence 3344444444 3334567765433332 554444444554 13665443 44332 3334674 444
Q ss_pred HHHHHhhcCCCCCCCCCCCccccCCC-CCCcccccccccCccHHHHHHHHHhhhc----------CCCceeEEEeCcccc
Q 016909 109 EFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMD----------RKDACAVTYFGDGGT 177 (380)
Q Consensus 109 ~~l~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~~p~AvG~A~A~k~~----------~~~~~vv~~~GDG~~ 177 (380)
+.+..++. .|+.+++|+... .+++..++|+||+|++.|+|+|+|.|+. .-++.|+|++|||++
T Consensus 85 ~~l~~~~~------~~s~~~ghp~~~~~pgve~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~vy~~~GDGel 158 (336)
T d1r9ja2 85 DDLKGFRQ------DGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCL 158 (336)
T ss_dssp HHHHTTTS------TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHH
T ss_pred HHHhhhcc------CCCcCcccccccCCCcccccccccccCcchhhHHHHHHHHHhccccccccccccceeEEeccchhh
Confidence 55555554 377888898753 4688888999999999999999998752 235789999999999
Q ss_pred CcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeC--CCHHHHHHHHHHHHHHhh
Q 016909 178 SEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG--NDALAIYSAVHAAREMAI 254 (380)
Q Consensus 178 ~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG--~D~~av~~a~~~A~~~ar 254 (380)
+||.+|||+++|+.++| ++|+|++||..++++++... ...++.+++++|||.++.||| +|...+..++..+..
T Consensus 159 ~EG~~~EA~~~A~~~~L~nLi~i~D~N~~~idg~~~~~-~~~d~~~rf~afGW~vi~Vdgg~~d~~~~~~~~~~a~~--- 234 (336)
T d1r9ja2 159 MEGVCQEALSLAGHLALEKLIVIYDSNYISIDGSTSLS-FTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKA--- 234 (336)
T ss_dssp HSHHHHHHHHHHHHHTCTTEEEEEEECSBCSSSBGGGT-CCCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---
T ss_pred chHHHHHHHHHHHHhhcCCEEEEEeccccccccccccc-chhHHHHHHHHhccceEEEecCchHHHHHHHHhhhhhh---
Confidence 99999999999999999 79999999999998776544 468899999999999999987 455666666665554
Q ss_pred ccCCcEEEEEEeecCCCCCCCCCCC---CCCChhHHHHHH
Q 016909 255 GEGRPILIEALTYRVGHHTTSDDST---KYRPVDEIEWWR 291 (380)
Q Consensus 255 ~~~gP~lIe~~t~R~~gHs~~Dd~~---~Yr~~~e~~~~~ 291 (380)
..++|++|.|+|.+.+|++..+.+. ..-+++|++.++
T Consensus 235 ~~~kP~~Ii~kTiiG~G~~~e~~~~~Hg~pl~~eEi~~~k 274 (336)
T d1r9ja2 235 TKGKPKMIVQTTTIGFGSSKQGTEKVHGAPLGEEDIANIK 274 (336)
T ss_dssp CCSSCEEEEEECCTTTTSTTTTSGGGTSSCCCHHHHHHHH
T ss_pred ccCCCccceEEEEEeecccccCCcceeecCCCHHHHHHHH
Confidence 3568999999999999987655322 223567776664
|
| >d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.4e-25 Score=216.63 Aligned_cols=179 Identities=22% Similarity=0.206 Sum_probs=143.4
Q ss_pred cEEEcc--ccch---HHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhh
Q 016909 88 DFVVPQ--YREP---GVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKM 161 (380)
Q Consensus 88 D~v~~~--yR~~---~~~l~~G~-~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~ 161 (380)
|.++.+ |-.. +.+...|+ ...+-+..++. .|+.+++|+....+++..++|+||+|+++|+|+|+|.|+
T Consensus 59 DrfilSkGH~~~~lYa~l~~~G~~~~~e~L~~fr~------~gs~~~ghp~~~~pgie~stGsLG~Gl~~avG~A~a~k~ 132 (335)
T d1gpua1 59 DRFVLSNGHAVALLYSMLHLTGYDLSIEDLKQFRQ------LGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQAN 132 (335)
T ss_dssp CEEEESSGGGHHHHHHHHHHTTCSCCHHHHTTTTC------TTCSCCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHH
T ss_pred CeEEEeCcchhHHHHHHHHHhCCCCCHHHHHhccc------CCCCCCCCCCCCCCCeEeCCCChhHHHHHHHHHHHHhHh
Confidence 654443 4443 23445785 44455555653 377789999876688889999999999999999999985
Q ss_pred c----------CCCceeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccCCcCHHHHHhhcCee
Q 016909 162 D----------RKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (380)
Q Consensus 162 ~----------~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~ 230 (380)
. ..++.|+|++|||+++||..|||+.+|+.++| ++|+|+++|+++++++++... ..++.+++++|||+
T Consensus 133 ~~~~~~~~~~~~~~~~v~~l~GDGel~EG~~~EA~~~A~~~~L~NLi~i~D~N~~~~dg~~~~~~-~~~~~~~f~a~GW~ 211 (335)
T d1gpua1 133 LAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISF-DEDVAKRYEAYGWE 211 (335)
T ss_dssp HHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHHTCE
T ss_pred hhcccccCCcCCCCCcEEEEecchhhchhhhhhhHhHhhhhccCCEEEEEecccccccccccccc-cCCHHHHHHhCCCc
Confidence 3 34688999999999999999999999999999 899999999999998877655 47899999999999
Q ss_pred EEEEeCC--CHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCC
Q 016909 231 SIRVDGN--DALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276 (380)
Q Consensus 231 ~~~VdG~--D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D 276 (380)
++.|||+ |...+..++..+.. ..++|++|.++|.+.+|....+
T Consensus 212 vi~vdg~~~d~~~~~~~~~~~~~---~~~KPt~Iia~TikGkGs~~e~ 256 (335)
T d1gpua1 212 VLYVENGNEDLAGIAKAIAQAKL---SKDKPTLIKMTTTIGYGSLHAG 256 (335)
T ss_dssp EEEESCTTTCHHHHHHHHHHHHH---CTTSCEEEEEECCTTTTSTTTT
T ss_pred EEEEcCCchhHHHHHHHHhhhhc---ccCCCcceEEeeccCCcCcccC
Confidence 9999854 56666666666554 3578999999999999955443
|
| >d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Maize (Zea mays) [TaxId: 4577]
Probab=99.93 E-value=1.5e-24 Score=209.51 Aligned_cols=228 Identities=18% Similarity=0.131 Sum_probs=162.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCC---------CCcEEEcc--ccchHHHH-
Q 016909 34 SEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQ--YREPGVLL- 101 (380)
Q Consensus 34 ~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~---------~~D~v~~~--yR~~~~~l- 101 (380)
+.+.+.++-.. +|...+| +......|.++...++. |.+.+-....|+ ..|.++.+ |-..+.+.
T Consensus 3 ~~~~~~~~~~~-iR~~~~~--~v~~a~sGH~G~~ls~a--di~~~Ly~~~l~~~~~~p~~~~rDrfilSkGH~~~~~Ya~ 77 (338)
T d1itza1 3 TGELLEKSVNT-IRFLAID--AVEKANSGHPGLPMGCA--PMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYAL 77 (338)
T ss_dssp CHHHHHHHHHH-HHHHHHH--HHHHHTCSCCHHHHHHH--HHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHH
T ss_pred cHHHHHHHHHH-HHHHHHH--HHHHcCCCCchHHHHHH--HHHHHHHHHHhCCCCCCCCCCCCCeEEEeccccchHHHHH
Confidence 44555554433 2333333 33333456654322221 333333344554 13665544 44443332
Q ss_pred --HcCCCHHH--HHHHhhcCCCCCCCCCCCccccCC-CCCCcccccccccCccHHHHHHHHHhhhc----------CCCc
Q 016909 102 --WRGFSMQE--FANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMD----------RKDA 166 (380)
Q Consensus 102 --~~G~~~~~--~l~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~~p~AvG~A~A~k~~----------~~~~ 166 (380)
..|+...+ -+..++. .|+.+++|+.. ..+++..++|+||+|+++|+|+|+|.|+. ..+.
T Consensus 78 l~~~G~~~~~~~dL~~fr~------~~s~~~Ghp~~~~~pgve~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~ 151 (338)
T d1itza1 78 LHLAGYDSVKEEDLKQFRQ------WGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDH 151 (338)
T ss_dssp HHHHTCTTCCHHHHTTTTS------TTCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCC
T ss_pred HHHcCCccchHHHHHHhhc------cCCcCCccccCCCCCCccccCCcHHhhHHHHHHHHHHHHHHhccccccccccccc
Confidence 46763322 2444543 37778889875 36789999999999999999999998863 2367
Q ss_pred eeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCC--CHHHHH
Q 016909 167 CAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN--DALAIY 243 (380)
Q Consensus 167 ~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~--D~~av~ 243 (380)
.|+|++|||+++||.+|||+++|+.++| ++|+|+++|++++++++.. ....++.+++++|||.++.|+|+ |.+++.
T Consensus 152 ~v~vl~GDGel~EG~~wEA~~~A~~~~L~NLi~i~D~N~~~~dg~~~~-~~~~~~~~k~~a~Gw~vi~v~~g~~~~~~i~ 230 (338)
T d1itza1 152 YTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEI-AFTEDVSTRFEALGWHTIWVKNGNTGYDDIR 230 (338)
T ss_dssp CEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGG-TCCSCHHHHHHHTTCEEEEESCTTTCHHHHH
T ss_pred eEEEEeCccccchHHHHHHHhHhhhhhccceeeeehhhcccccccccc-ccCCCHHHHHHhcCCeEEEeeCCchhHHHHH
Confidence 8999999999999999999999999999 8999999999999987664 44678999999999999998653 688898
Q ss_pred HHHHHHHHHhhccCCcEEEEEEeecCCCCCCCC
Q 016909 244 SAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276 (380)
Q Consensus 244 ~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D 276 (380)
.+++.|... .++|++|.++|....|-+...
T Consensus 231 ~a~~~a~~~---~~kPt~Iia~TikGkG~~~~e 260 (338)
T d1itza1 231 AAIKEAKAV---TDKPTLIKVTTTIGFGSPNKA 260 (338)
T ss_dssp HHHHHHHHC---CSSCEEEEEECCTTTTCTTTT
T ss_pred HHHHHHHHc---cCCCceeEeecCcccCcCccC
Confidence 888887653 578999999999999976543
|
| >d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Pyruvate dehydrogenase E1 component, PP module species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=1.2e-18 Score=172.46 Aligned_cols=194 Identities=19% Similarity=0.178 Sum_probs=139.9
Q ss_pred HHHHHHHHhcCC------CCcEEEcc-ccchH---HHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccc
Q 016909 74 EAINIASAAAIK------NDDFVVPQ-YREPG---VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSS 143 (380)
Q Consensus 74 Ea~~~~~~~~l~------~~D~v~~~-yR~~~---~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g 143 (380)
|...+.....|+ .+|+|++- |=+++ .+...|....+-+..++....+ .|.....|+.....+....++
T Consensus 60 ~l~~vl~~~~~~~p~~~~~d~~ilskGHas~~lYa~l~~~g~~~~~~l~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~ 137 (415)
T d2ieaa2 60 TIYDVCFNHFFRARNEQDGGDLVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHG--NGLSSYPHPKLMPEFWQFPTV 137 (415)
T ss_dssp HHHHHHHHHTCCCCCSSSCCCEEECCGGGHHHHHHHHHHTTSSCHHHHTTBTCCTTS--SCBCSSCCTTTSTTTCCCCCC
T ss_pred HHHHHHHHhhcCCCCcCCCCCEEEecCcchHHHHHHHHHcCCCchhhHHHHhhhccC--CCCCCCCCCCCCCCCCcCCCc
Confidence 444555566665 35677763 33332 3445787666666666543110 111122222222234455567
Q ss_pred cccCccHHHHHHHHHhhh-------cCCCceeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeeccccc
Q 016909 144 TIATQLPHAVGAAYALKM-------DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQF 215 (380)
Q Consensus 144 ~lG~~~p~AvG~A~A~k~-------~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~ 215 (380)
++|.+.+.++|.+.+.+. .+.+..|+|++|||+++||++|||+++|+.++| ++|+|+++|.+++++++....
T Consensus 138 ~~~~g~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~gDg~~~eg~~~ea~~~a~~~~l~nl~~i~d~N~~~~~~~~~~~~ 217 (415)
T d2ieaa2 138 SMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNG 217 (415)
T ss_dssp STTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTS
T ss_pred hhhhHHHHHHHHHHHHHHHhhhccccCCCceEEEEecccccchHHHHHHHHHHHHhCCCeEEEEEeCCceeeccChhccc
Confidence 777777777666655433 356789999999999999999999999999999 899999999999999876433
Q ss_pred -CCcCHHHHHhhcCeeEEEE------------------------------------------------------------
Q 016909 216 -RSDGAVVKGRAYGVRSIRV------------------------------------------------------------ 234 (380)
Q Consensus 216 -~~~~~~~~a~a~G~~~~~V------------------------------------------------------------ 234 (380)
...++.+++++|||.++.|
T Consensus 218 ~~~~~~~~~~~~~gw~v~~~~~~~~~~~~~~~d~~~al~~~~~~~v~g~~~~~~~~~ga~~~~~~~~~~~~~~~l~~~l~ 297 (415)
T d2ieaa2 218 KIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWT 297 (415)
T ss_dssp CHHHHHHHHHHHTTCEEEEECBCGGGHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTGGGSHHHHTTSTTSC
T ss_pred cchHHHHHHHHhcCceeEEeecchhhhhhhccchhhhhhhhhhccccccceeccccchhhhhhhhccccchhhHHHhhhh
Confidence 3467899999999999877
Q ss_pred ---------eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCC
Q 016909 235 ---------DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHH 272 (380)
Q Consensus 235 ---------dG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gH 272 (380)
||||+.+++.+++++.+. .++|++|.++|.+.+|=
T Consensus 298 ~~~~~~l~~dGHd~~~l~~a~~~ak~~---~d~P~vI~a~TiKGkGl 341 (415)
T d2ieaa2 298 DEQIWALNRGGHDPKKIYAAFKKAQET---KGKATVILAHTIKGYGM 341 (415)
T ss_dssp HHHHTTCCBGGGCHHHHHHHHHHHHHC---CSSCEEEEEECCTTTTC
T ss_pred hhhhhhhhhccCchhhhHHHHHHHHhc---CCCceEEEEecccccCC
Confidence 889999999999999875 57899999999998874
|
| >d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=99.77 E-value=1.6e-18 Score=158.56 Aligned_cols=157 Identities=19% Similarity=0.249 Sum_probs=112.8
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec--------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~-------- 211 (380)
..|+||.++|.|+|+++|. +++.|+|++|||+|+++ ..+|.+|++++||+++||.||+ |++....
T Consensus 50 ~~g~mG~~lp~aiGa~~a~----p~~~vv~i~GDGsf~m~--~~eL~ta~~~~lpi~iiV~nN~~~~~i~~~~~~~~~~~ 123 (229)
T d2djia3 50 LFATMGIAIPGGLGAKNTY----PDRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKNL 123 (229)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCTHHHHHHHHHCSCC
T ss_pred Ccccccccchhhhhhhhhc----ccccccccccccccccc--cchhhhhhcccCCceEEEeCCchhhhhhHHHHhhcCCC
Confidence 4689999999999999984 68899999999999643 4569999999999766665554 6542211
Q ss_pred -ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC----CCCCCCCCCCCCChhH
Q 016909 212 -SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG----HHTTSDDSTKYRPVDE 286 (380)
Q Consensus 212 -~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~----gHs~~Dd~~~Yr~~~e 286 (380)
.......|+++.|++||+++++|+ +++++.+++++|++. ++.++|+||||++.+-. .|... ++.. .++.+
T Consensus 124 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~A~~~-~~~~~p~lIev~v~~~~~~p~~~~~~-~~~~-~~~~~ 198 (229)
T d2djia3 124 FGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMDRVMAEAVAA-NKAGHTVVIDCKITQDRPIPVETLKL-DSKL-YSEDE 198 (229)
T ss_dssp CSCBCCCCCHHHHHHHTTSEEEEEC--BHHHHHHHHHHHHHH-HHTTCCEEEEEECCSCCCCCTTSCTT-CTTT-SCHHH
T ss_pred CcCcCCCCChhhhhhccCccEEEEe--cHHHhHHHHHHHHHh-cCCCCeEEEEEEeCCCCCCCcccccc-Cccc-cCHHH
Confidence 112345789999999999999998 899999999999874 44569999999998743 23223 3333 34544
Q ss_pred HHHHHh---CCChHHHHHHHHHHCCC
Q 016909 287 IEWWRT---TQDPVTRFRKWIESNGW 309 (380)
Q Consensus 287 ~~~~~~---~~DPi~~~~~~L~~~g~ 309 (380)
++...+ ..| +..++++|.+.|.
T Consensus 199 ~~~~~e~~~~~~-~~p~~~~le~~g~ 223 (229)
T d2djia3 199 IKAYKERYEAAN-LVPFREYLEAEGL 223 (229)
T ss_dssp HHHHHHHTTCTT-CCCHHHHHHHTTC
T ss_pred HHHHHHhccccc-CCchHHHHHHcCc
Confidence 442211 122 3335777877775
|
| >d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=99.73 E-value=1.4e-17 Score=152.06 Aligned_cols=120 Identities=20% Similarity=0.252 Sum_probs=94.7
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeee---------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP--------- 210 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~--------- 210 (380)
..|+||+++|.|+|+++| .+++.|||++|||+|++ ...+|.+|++++||+++||.||+ |++...
T Consensus 53 ~~g~mG~glpaAiGa~la----~p~~~Vv~i~GDG~f~m--~~~EL~Ta~~~~lpi~~vV~NN~~yg~i~~~q~~~~~~~ 126 (228)
T d2ez9a3 53 LFATMGVGIPGAIAAKLN----YPERQVFNLAGDGGASM--TMQDLATQVQYHLPVINVVFTNCQYGWIKDEQEDTNQND 126 (228)
T ss_dssp SSCCTTCHHHHHHHHHHH----CTTSCEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHCSSC
T ss_pred ccccccccchhhhhhhhh----hccceeEeecCCccccc--cchhhhhhccccCceEEEEeccccchhhhhhhhhcccCC
Confidence 458899999999999998 46889999999999974 34669999999999777666665 543211
Q ss_pred -cccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016909 211 -ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 211 -~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 270 (380)
........|+++.|++||+++++|+ ++.++..++++|.. .+.++|+|||+.+.+-.
T Consensus 127 ~~~~~l~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~a--l~~~~p~lIev~vd~d~ 183 (228)
T d2ez9a3 127 FIGVEFNDIDFSKIADGVHMQAFRVN--KIEQLPDVFEQAKA--IAQHEPVLIDAVITGDR 183 (228)
T ss_dssp CCSSBCCCCCHHHHHHHTTCEEEEEC--BGGGHHHHHHHHHH--HTTTSCEEEEEECCCCC
T ss_pred cccccccCccHHhhccccccceEEeC--CHHHHHHHHHHHHH--HcCCCeEEEEEEECCCC
Confidence 1112345789999999999999998 88889999987653 24689999999997754
|
| >d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=99.72 E-value=1.3e-17 Score=147.24 Aligned_cols=115 Identities=22% Similarity=0.320 Sum_probs=91.6
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEE-EEcCCcceeeec--------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI-CRNNGWAISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~v-v~NN~~~i~~~~-------- 211 (380)
+.|+||+++|.|+|+++|. +++.|||++|||+++.. ..+|.+|++++||+++| ++||+|++....
T Consensus 58 ~~g~mG~~~p~AiGa~la~----p~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~~iV~nN~~~g~~~~~~~~~~~~~ 131 (183)
T d1q6za3 58 AAGGLGFALPAAIGVQLAE----PERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAEN 131 (183)
T ss_dssp TTCCTTSHHHHHHHHHHHC----TTSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCCS
T ss_pred cCCCcccchhHHHhhhhhc----cccceEEeccccccccc--cHHHHHHHHhCCCEEEEEEeccccchhhhhhhcccccC
Confidence 4578999999999999884 68899999999999754 34599999999996654 555557653211
Q ss_pred --ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 212 --SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 212 --~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
....+..++.+.+++||+++++|+ +++++.+++++|++ .++|+|||++|.
T Consensus 132 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lieV~T~ 183 (183)
T d1q6za3 132 VPGLDVPGIDFRALAKGYGVQALKAD--NLEQLKGSLQEALS----AKGPVLIEVSTV 183 (183)
T ss_dssp CCSCBCCCCCHHHHHHHHTCEEEEES--SHHHHHHHHHHHHT----CSSCEEEEEEBC
T ss_pred cccccCCCccHHHHHHHcCCEEEEEC--CHHHHHHHHHHHHh----CCCcEEEEEEeC
Confidence 112345689999999999999998 99999999988875 589999999983
|
| >d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=99.71 E-value=1.1e-17 Score=149.72 Aligned_cols=115 Identities=26% Similarity=0.329 Sum_probs=92.1
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeee----------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP---------- 210 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~---------- 210 (380)
.|+||.++|.|+|+++|. +++.|||++|||+++.. ..+|.+++++++|+++||.||+ |++...
T Consensus 61 ~g~mG~~lp~aiGa~~a~----p~~~Vv~i~GDGsf~~~--~~el~t~~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~~~ 134 (198)
T d2ihta3 61 CSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRSH 134 (198)
T ss_dssp SCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHHSSCC
T ss_pred cccchhHHHHHHHHhhhh----cccceEeeccccccccc--chhhhhhhhhhhhhhHHHhhccccceEeeeecccccccc
Confidence 578999999999998884 67899999999999643 4569999999999776666554 543211
Q ss_pred -cccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 211 -ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 211 -~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
........|+.++|++||+++++|+ +++++.+++++|++ .++|+|||++|.+
T Consensus 135 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~vd~ 187 (198)
T d2ihta3 135 DPAVKFGGVDFVALAEANGVDATRAT--NREELLAALRKGAE----LGRPFLIEVPVNY 187 (198)
T ss_dssp GGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHHHHHT----SSSCEEEEEEBCC
T ss_pred ccccccCCcchhhhccccCceEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEcCC
Confidence 1122345789999999999999998 99999999988875 5899999999843
|
| >d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.70 E-value=1.6e-17 Score=149.58 Aligned_cols=117 Identities=21% Similarity=0.247 Sum_probs=94.1
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeee---------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP--------- 210 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~--------- 210 (380)
..|++|.++|.|+|+++| .+++.|||++|||+|++. ..+|.+|++++||+++||.||+ |++...
T Consensus 50 ~~g~mG~glpaaiGa~~A----~p~~~Vi~i~GDGsf~m~--~~El~Ta~r~~lpi~iiV~NN~~~g~i~~~q~~~~~~~ 123 (208)
T d1ybha3 50 GLGAMGFGLPAAIGASVA----NPDAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQHLGMVMQWEDRFYKAN 123 (208)
T ss_dssp SSCCTTCHHHHHHHHHHH----CTTSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSBCHHHHHHHHHHSTTC
T ss_pred ccccchhhhhhHHHHHhc----CCCCcEEEEccCCchhhh--hhhHHHHHHhCCCEEEEEEeccccccceehhhhccccc
Confidence 358899999999999988 478899999999999754 3459999999999777766664 544211
Q ss_pred ---------cccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016909 211 ---------ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 211 ---------~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 269 (380)
.......+|+.+.|++||+++++|+ +++++.+++++|++ .++|+|||+.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~pd~~~iA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~id~~ 185 (208)
T d1ybha3 124 RAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQTMLD----TPGPYLLDVICPHQ 185 (208)
T ss_dssp CCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHHHHH----SSSCEEEEEECCTT
T ss_pred ccccccccccccCCCCCCHHHhhccCCceEEEcC--CHHHHHHHHHHHHh----CCCCEEEEEEECCC
Confidence 1112234689999999999999998 99999999999986 48999999999653
|
| >d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.67 E-value=5.3e-17 Score=144.41 Aligned_cols=116 Identities=21% Similarity=0.284 Sum_probs=92.3
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeecc-------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~~------- 212 (380)
..|.+|+++|.|+|+++|. +++.|||++|||+|+.+ ..+|.++.++++|+++|| +||.|++.....
T Consensus 52 ~~g~mG~~l~~aiGa~la~----p~~~vi~i~GDG~f~~~--~~el~t~~~~~l~~~iiv~nN~~~~~~~~~~~~~~~~~ 125 (192)
T d1ozha3 52 GQQTMGVALPWAIGAWLVN----PERKVVSVSGDGGFLQS--SMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQRL 125 (192)
T ss_dssp TTCCTTCHHHHHHHHHHHS----TTSEEEEEEEHHHHHHH--TTHHHHHHHHTCCEEEEEEECSBCHHHHHHHHHHHSSC
T ss_pred ccccccccccchhHHHhhc----ccccceeecccccccch--hhhHHHHhhhcCceeEEEEcCCCccccccccccccCcc
Confidence 4688999999999999884 67899999999999754 355889999999865555 556676543221
Q ss_pred --cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
......++.++|++||+++++|+ +++++.+++++|++ .+||+|||++|.|
T Consensus 126 ~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIeV~vd~ 177 (192)
T d1ozha3 126 SGVEFGPMDFKAYAESFGAKGFAVE--SAEALEPTLRAAMD----VDGPAVVAIPVDY 177 (192)
T ss_dssp CSCBCCCCCHHHHHHTTTSEEEECC--SGGGHHHHHHHHHH----SSSCEEEEEEBCC
T ss_pred ccCcCCCCCHHHHHHHhccccEEeC--CHHHHHHHHHHHHH----cCCcEEEEEEeCC
Confidence 12234689999999999999998 88899999988876 5899999999844
|
| >d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.66 E-value=1.8e-16 Score=144.49 Aligned_cols=117 Identities=19% Similarity=0.220 Sum_probs=94.6
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeee---------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTP--------- 210 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~--------- 210 (380)
..+++|.++|.|+|+++|. +++.|||++|||+|+.. ..+|.+|.+++||+++||.|| +|+....
T Consensus 61 ~~g~mG~~~~aaiGa~lA~----p~r~Vv~i~GDGsf~m~--~~EL~Ta~r~~l~i~iiV~nN~~~g~~~~~~~~~~~~~ 134 (227)
T d1t9ba3 61 GLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFNMT--LTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHR 134 (227)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTTC
T ss_pred ccccchhhHHHHHHHHhcC----CCCeEEEeCCCcccccc--hHHHHHHhhcCCceEEEEEecccccchhHHHhhhhccc
Confidence 4689999999999999984 78899999999999754 355999999999966666555 4643221
Q ss_pred -cccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016909 211 -ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 211 -~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 269 (380)
........|+.+.|++||+++++|. +.+++.+++++|++ .++|+|||+.+.+-
T Consensus 135 ~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~vd~~ 188 (227)
T d1t9ba3 135 YSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFVS----TKGPVLLEVEVDKK 188 (227)
T ss_dssp CCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----CSSCEEEEEEBCSS
T ss_pred cccccCCCCCHHHHHhhcccceEeeC--CHHHHHHHHHHHHH----CCCCEEEEEEECCC
Confidence 1122345789999999999999998 99999999999886 48999999999764
|
| >d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=5.7e-17 Score=144.60 Aligned_cols=122 Identities=15% Similarity=0.148 Sum_probs=95.1
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEE-EEEEcCCcceeeecc------c
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVI-FICRNNGWAISTPIS------D 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi-~vv~NN~~~i~~~~~------~ 213 (380)
..|++|+++|.|+|+|+|.|...+++.|||++|||+++.. ..+|.+|.++++|++ +|++||+|++..... .
T Consensus 51 ~~g~mG~~l~~aiG~alaa~~~~p~~~Vv~i~GDGsf~m~--~~eL~ta~~~~l~i~~iV~nN~~y~~~~~~~~~~~~~~ 128 (196)
T d1pvda3 51 LWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLT--VQEISTMIRWGLKPYLFVLNNDGYTIEKLIHGPKAQYN 128 (196)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHTTSCTTCGGG
T ss_pred CcCcccccccchhHHHHHHHhcCCCCceeeccCccccccc--cccccccccccccceEEEEeCCccceeEeeccCccccc
Confidence 4689999999999999999999999999999999999643 467999999999855 466666776532211 1
Q ss_pred ccCCcCHHHHHhhcC---eeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 214 QFRSDGAVVKGRAYG---VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ~~~~~~~~~~a~a~G---~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.....++.+.|++|| +.+.+|+ ++.++.++++++.. .++++|+|||+++.|
T Consensus 129 ~~~~~d~~~la~a~G~~~~~~~~v~--~~~el~~al~~~~~--~~~~~~~lIeV~i~~ 182 (196)
T d1pvda3 129 EIQGWDHLSLLPTFGAKDYETHRVA--TTGEWDKLTQDKSF--NDNSKIRMIEIMLPV 182 (196)
T ss_dssp CCCCCCGGGHHHHTTCSSEEEEEEC--BHHHHHHHHTCTTT--TSCSSEEEEEEECCT
T ss_pred cCCCCCHHHHHHHhCCCCceEEEec--CHHHHHHHHHHHHH--hCCCCcEEEEEECCC
Confidence 123468999999998 4556677 99999888876532 346799999998844
|
| >d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=99.64 E-value=3e-16 Score=140.81 Aligned_cols=117 Identities=20% Similarity=0.216 Sum_probs=90.0
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEE-cCCcceeeeccc----cc
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR-NNGWAISTPISD----QF 215 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~-NN~~~i~~~~~~----~~ 215 (380)
..|+||+++|.|+|+++| .+++.|||++|||+|+. ...+|.+|.++++|+++||. |++|++...... ..
T Consensus 49 ~~g~mG~~l~aAiGa~la----~p~~~vv~i~GDGsf~m--~~~eL~Ta~~~~lpi~iiV~NN~~~g~~~~~~~~~~~~~ 122 (204)
T d1zpda3 49 QWGHIGWSVPAAFGYAVG----APERRNILMVGDGSFQL--TAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNI 122 (204)
T ss_dssp TTCCTTTHHHHHHHHHHH----CTTSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCC
T ss_pred CCcccchhhHHHHHHHHh----CCCCceeccccccceee--eecccchhhhcccccceEEEecccccccceecccccccc
Confidence 458899999999999998 46899999999999974 45779999999999666555 556776433221 12
Q ss_pred CCcCHHHHHhh---------cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 216 RSDGAVVKGRA---------YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 216 ~~~~~~~~a~a---------~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
...++.+.+++ +|+++++|+ ++.++.+++++|+. +.++|+|||+.+.|
T Consensus 123 ~~~d~~~~~~~~~~~~~a~~~g~~~~~v~--~~~el~~al~~al~---~~~gp~lieV~vd~ 179 (204)
T d1zpda3 123 KNWDYAGLMEVFNGNGGYDSGAAKGLKAK--TGGELAEAIKVALA---NTDGPTLIECFIGR 179 (204)
T ss_dssp CCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHHHHHHHHHHHHH---CCSSCEEEEEECCT
T ss_pred chhhhhhhhhhcCcchhhhccCccEEEec--CHHHHHHHHHHHHH---cCCCcEEEEEEECc
Confidence 34566666554 588999998 99999999998874 35799999998733
|
| >d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=99.64 E-value=5.1e-16 Score=136.90 Aligned_cols=115 Identities=19% Similarity=0.191 Sum_probs=90.7
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeec---------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI--------- 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~--------- 211 (380)
..|++|.++|.|+|.+ |. +++.|+|++|||+|++.. .+|.+|+++++|+++||.||+--+....
T Consensus 55 ~~g~mG~~l~~aig~~-a~----~~~~vv~i~GDGsf~~~~--~el~ta~~~~l~i~iiV~NN~g~~~~~q~~~~~~~~~ 127 (183)
T d2ji7a3 55 TWGVMGIGMGYCVAAA-AV----TGKPVIAVEGDSAFGFSG--MELETICRYNLPVTVIIMNNGGIYKGNEADPQPGVIS 127 (183)
T ss_dssp TTTCTTCHHHHHHHHH-HH----HCSCEEEEEEHHHHHTTG--GGHHHHHHTTCCEEEEEEECSBSSCSCCCCSBTTBCC
T ss_pred Cccccccccchhhhhh-cC----CcceEEEEEcCcchhhch--hhhhhhhhccccchhhhhhhhhhhhhhhccccccccc
Confidence 3578999999988766 32 577899999999997653 4599999999999999988862111111
Q ss_pred ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.......++.+.|++||+++++|+ +++++.+++++|++ .++|+|||+.|.+
T Consensus 128 ~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~idp 178 (183)
T d2ji7a3 128 CTRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAVA----SGKPCLINAMIDP 178 (183)
T ss_dssp TTBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----HTSCEEEEEEBCT
T ss_pred cccccccchhhhhhhcCCcEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEECC
Confidence 011244689999999999999998 99999999999886 4899999999854
|
| >d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=99.62 E-value=2.9e-16 Score=140.01 Aligned_cols=115 Identities=19% Similarity=0.203 Sum_probs=89.0
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEE-cCCcceeeecc------c
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR-NNGWAISTPIS------D 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~-NN~~~i~~~~~------~ 213 (380)
..|+||+++|.|+|+++|. +++.|||++|||+|+++ ..+|.+|.++++|+++||. ||+|++..... .
T Consensus 51 ~~g~mG~~l~~aiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~l~i~iiV~nN~~~~~~~~~~~~~~~~~ 124 (196)
T d1ovma3 51 LWGSIGYTLAAAFGAQTAC----PNRRVIVLTGDGAAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYN 124 (196)
T ss_dssp TTCCTTHHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--TTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGG
T ss_pred CCccccccchhhHHHHHhh----hccceecccccccceee--cccccccccccccceEEEEecCccccchhhhccccccc
Confidence 3579999999999999985 67899999999999754 4679999999998665554 55677642211 1
Q ss_pred ccCCcCHHHHHhhcCe----eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 214 QFRSDGAVVKGRAYGV----RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 214 ~~~~~~~~~~a~a~G~----~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
.....++.+.+++||+ ++++|. +++++.++++++++ .+||+|||+++-
T Consensus 125 ~~~~~~~~~~a~~~g~~~~~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~ 176 (196)
T d1ovma3 125 DIALWNWTHIPQALSLDPQSECWRVS--EAEQLADVLEKVAH----HERLSLIEVMLP 176 (196)
T ss_dssp CCCCCCGGGSTTTSCSSCCEEEEEEC--BHHHHHHHHHHHTT----CSSEEEEEEECC
T ss_pred cccccccchhHHhcCccccceeEEEe--cHHHHHHHHHHHHH----CCCcEEEEEEeC
Confidence 2234578888888885 677887 89998888877764 689999999873
|
| >d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: PFOR PP module domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI species: Desulfovibrio africanus [TaxId: 873]
Probab=98.14 E-value=5.3e-06 Score=80.37 Aligned_cols=104 Identities=14% Similarity=0.133 Sum_probs=77.1
Q ss_pred hhhcCCCceeEEEeCcccc-CcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc----------------ccCCcCH
Q 016909 159 LKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD----------------QFRSDGA 220 (380)
Q Consensus 159 ~k~~~~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~----------------~~~~~~~ 220 (380)
.+....+..|+++.|||.+ ..|. .+|.-|...+.+|++||.||. |++++-+.. .....|+
T Consensus 163 ~~d~~~k~~V~~~gGDG~~~dIG~--~~L~~A~~rg~nit~ivlDNe~Y~nTGgQ~S~~TP~Ga~t~ttp~Gk~~~kkdi 240 (447)
T d2c42a2 163 MSDLYTKKSVWIFGGDGWAYDIGY--GGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDL 240 (447)
T ss_dssp TGGGTSCCEEEEEEEHHHHHTTTH--HHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCH
T ss_pred hhhcccCCcEEEEecCccHhhcCh--HHHHHHHHcCCCceEEEEcCccccCCCCcCCCCCcCCeecccccCCCcCCCCCH
Confidence 3444567789999999986 5663 457788889999888776665 655432211 1123478
Q ss_pred HHHHhhcCeeEE-EEe-CCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 221 VVKGRAYGVRSI-RVD-GNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 221 ~~~a~a~G~~~~-~Vd-G~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
...+.++|.+.+ ++. +.++..+.+++++|.++ +||.+|++.+--
T Consensus 241 ~~ia~a~g~~YVA~~s~~~~~~~l~kaikeA~~~----~GpS~I~~~sPC 286 (447)
T d2c42a2 241 ARMVMTYGYVYVATVSMGYSKQQFLKVLKEAESF----PGPSLVIAYATC 286 (447)
T ss_dssp HHHHHTTSSSEEEEECTTTCHHHHHHHHHHHHHS----SSCEEEEEECCC
T ss_pred HHHHHHCCCceEEEEeCCCCHHHHHHHHHHHHhC----CCCeEEEeecCC
Confidence 999999998755 564 78999999999999875 899999998743
|
| >d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=96.27 E-value=0.0062 Score=51.73 Aligned_cols=109 Identities=15% Similarity=0.091 Sum_probs=71.4
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.+.+. +.-.++++..|=|.++ ...++.-|...++|+|+|.-+-.-.............|..+.++.+-
T Consensus 54 ~~~A~gyar~t---g~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~q~~d~~~~~~~~t 127 (188)
T d2ji7a2 54 GYAASIAGYIE---GKPGVCLTVSAPGFLN---GVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHC 127 (188)
T ss_dssp HHHHHHHHHHH---SSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHTGGGS
T ss_pred hhHHHHHHhhh---cccceeeccccccccc---cchhHHHHHHhcccceEEeccCchhhhcccccccceeeeecccCCcc
Confidence 44566666553 4445555666667664 34567778889999999986433211111111222336677888887
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEE
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEAL 265 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~ 265 (380)
-...+|. +++++.+.+++|+..+..++ ||+.|++-
T Consensus 128 k~~~~v~--~~~~i~~~~~~A~~~a~~~~~GPV~l~iP 163 (188)
T d2ji7a2 128 KASFRIN--SIKDIPIGIARAVRTAVSGRPGGVYVDLP 163 (188)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred hhhhccc--cccccHHHHHHHHHHHhCCCCceEEEEcC
Confidence 7778887 77888888888888777765 69999984
|
| >d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=96.23 E-value=0.0064 Score=51.58 Aligned_cols=107 Identities=21% Similarity=0.092 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.+.+ .+.-.++++..|=|.++ ..-+|.-|...++|||+|+-+........ ..+..-|....++.+.-
T Consensus 57 ~~A~gyar~---tg~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~--~~~Q~~d~~~~~~~itk 128 (184)
T d2djia2 57 MAAVMQSKF---GGNLGVTVGSGGPGASH---LINGLYDAAMDNIPVVAILGSRPQRELNM--DAFQELNQNPMYDHIAV 128 (184)
T ss_dssp HHHHHHHHT---TCCCEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEESCGGGTTT--TCTTCCCCHHHHHTTCS
T ss_pred HHHHhhhhc---ccCcceeeccccccccc---hhHhHHHHHHhCccceeecccchhhHhhc--Ccccccccccchhhhcc
Confidence 345555433 34444556666777776 24567778889999999997653321111 11112255677777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
...+|. +++++.+.+++|+..+..++||+.|++-.
T Consensus 129 ~~~~v~--~~~~~~~~~~~A~~~a~~~rGPv~i~iP~ 163 (184)
T d2djia2 129 YNRRVA--YAEQLPKLVDEAARMAIAKRGVAVLEVPG 163 (184)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHHHTTSEEEEEEET
T ss_pred eeeccc--cchhhHHHHHHHHHHHhCCCCCEEEEeCc
Confidence 677777 88888899999988888888999999854
|
| >d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=96.19 E-value=0.013 Score=49.68 Aligned_cols=108 Identities=16% Similarity=0.108 Sum_probs=69.7
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeee---cccccC---CcCHHH
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP---ISDQFR---SDGAVV 222 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~---~~~~~~---~~~~~~ 222 (380)
.-+|.|.+... +.. .+++..|=|.++ ..-++.-|...++|||+|+-+........ ...... ..+..+
T Consensus 53 ~~mA~gyar~t---g~~-~v~~t~GpG~~N---~~~gl~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (186)
T d1zpda2 53 GFSAEGYARAK---GAA-AAVVTYSVGALS---AFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLE 125 (186)
T ss_dssp HHHHHHHHHHH---SCE-EEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHH
T ss_pred ehhhhhhhhcc---ccc-eeEeeccccchh---hhhhhhhhhhcccceEEEecccCcccccCCCcceeecCCcchhhhhh
Confidence 34566666542 332 333445655554 34567778889999999997644322111 111111 123456
Q ss_pred HHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016909 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~ 265 (380)
.++.+--...++. +++++.+.+++|+..+..+++|+.|++-
T Consensus 126 ~~~~vtk~~~~v~--~~~~~~~~i~~A~~~A~~~~~PV~l~iP 166 (186)
T d1zpda2 126 MAKNITAAAEAIY--TPEEAPAKIDHVIKTALREKKPVYLEIA 166 (186)
T ss_dssp HHGGGCSCEEEEC--SGGGHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred ccCCceeeeeEcC--CHHHHHHHHHHHHHHHhhCCCCEEEECC
Confidence 7788877778887 7888888888888888888899999985
|
| >d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.13 E-value=0.013 Score=49.45 Aligned_cols=108 Identities=15% Similarity=0.036 Sum_probs=73.4
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.. .+.-.++++..|=|.++ ..-++..|...++|||+|.-+......... .....|....++.+-
T Consensus 55 ~~~A~gyar~---tg~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~isg~~~~~~~~~~--~~q~~d~~~~~~~~t 126 (181)
T d1ozha2 55 AFMAAAVGRI---TGKAGVALVTSGPGCSN---LITGMATANSEGDPVVALGGAVKRADKAKQ--VHQSMDTVAMFSPVT 126 (181)
T ss_dssp HHHHHHHHHH---HSSCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTC--------CCCHHHHHGGGC
T ss_pred HHHHHHHHHh---cCCccceeeccchhhhh---hhhhHHHHhhcCCceeeeecccchhhcccc--ccccccccccccccc
Confidence 3455566554 34445566666777776 345677888899999999977653322211 122346778888887
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
-...+|. +++++.+.+.+|+..+..++ ||+.|++-.
T Consensus 127 k~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (181)
T d1ozha2 127 KYAIEVT--APDALAEVVSNAFRAAEQGRPGSAFVSLPQ 163 (181)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred hheeccC--chhHHHHHHHHHHHHHhhCCCccEEEEcCh
Confidence 7788886 78888888889888887775 799999854
|
| >d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.96 E-value=0.015 Score=48.80 Aligned_cols=108 Identities=13% Similarity=0.064 Sum_probs=62.4
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeec---ccccCC---cCHHH
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SDQFRS---DGAVV 222 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~---~~~~~~---~~~~~ 222 (380)
.-+|.|.+.+. + ...+++..|=|.++ ..-++..|...++|+|+|+-.+........ +..... .++.+
T Consensus 54 ~~~A~gyar~t---~-~~~v~~t~GpG~~N---~~~gl~~A~~~~~P~l~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (180)
T d1pvda2 54 AYAADGYARIK---G-MSCIITTFGVGELS---ALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGDFTVFHR 126 (180)
T ss_dssp HHHHHHHHHHH---S-CEEEEEETTHHHHH---HHHHHHHHHHHTCCEEEEEEECCCC--------CCSCSSSCSSHHHH
T ss_pred hHHHHHHhhcc---C-Cceeeeccccccch---hhHHHHHHHhhcccEEEEeccCCcccccccceeeecccccchhHHHH
Confidence 34566766553 2 23555666777664 455677788899999999865443322111 111111 22445
Q ss_pred HHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016909 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~ 265 (380)
.++.+--...++. +++++.+.+++|+..+...+||+.|++-
T Consensus 127 ~~~~~tk~~~~v~--~~~~~~~~i~~A~~~a~~~~gPv~i~iP 167 (180)
T d1pvda2 127 MSANISETTAMIT--DIATAPAEIDRCIRTTYVTQRPVYLGLP 167 (180)
T ss_dssp HHGGGCSEEEECC--CTTTHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred HhhhheeEEEEcC--CHHHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 6666644455554 5555555566666555556799999985
|
| >d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.84 E-value=0.019 Score=47.92 Aligned_cols=107 Identities=18% Similarity=0.173 Sum_probs=71.7
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|... ++-.++++..|=|.++ ..-++..|...++|||+|+-+........ ......|..+.++.+--
T Consensus 56 ~~A~gyar~t---g~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~l~~~~tk 127 (175)
T d1t9ba2 56 HMAEGYARAS---GKPGVVLVTSGPGATN---VVTPMADAFADGIPMVVFTGQVPTSAIGT--DAFQEADVVGISRSCTK 127 (175)
T ss_dssp HHHHHHHHHH---SSCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTTTS--CCTTCCCHHHHTGGGSS
T ss_pred HHHHHHHHHh---CCceEEEEecCcHHHH---HHHHHHHHHHcCCCEEEEecCCChhhcCC--CccccccHhHhccccee
Confidence 4566665542 4445556666777775 34567788899999999997654321111 11123367778888866
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
...++. ++..+.+.+++|+..++.+ .||+.|++-.
T Consensus 128 ~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~ 163 (175)
T d1t9ba2 128 WNVMVK--SVEELPLRINEAFEIATSGRPGPVLVDLPK 163 (175)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred eeEecC--CHHHHHHHHHHHHHHHhcCCCccEEEEcCh
Confidence 667776 7778888888888888875 5799999853
|
| >d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=95.76 E-value=0.014 Score=48.84 Aligned_cols=107 Identities=15% Similarity=0.067 Sum_probs=66.6
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.+.+ .++-.++++..|=|.++ ..-+|..|...++|+|+|.-+..-..... ..+-.-|....++.+--
T Consensus 56 ~~A~gyar~---tgk~gv~~~t~GpG~~N---~~~gl~~A~~~~~P~l~i~g~~~~~~~~~--~~~Q~~d~~~~~~~itk 127 (174)
T d2ez9a2 56 MAAAADAKL---TGKIGVCFGSAGPGGTH---LMNGLYDAREDHVPVLALIGQFGTTGMNM--DTFQEMNENPIYADVAD 127 (174)
T ss_dssp HHHHHHHHH---HSSCEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEECCTTTTTS--CCTTCCCCHHHHTTTCS
T ss_pred HHHHHHHhh---cCceeEEeecccccccc---hhhhHHHHHhcCccceeeeccccccccCc--cccccchhhhhhccccc
Confidence 455566554 34555666666878776 34557778889999999987653211100 11112244556666654
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
...+|. +++++.+.+++|+..+....||+.|++-.
T Consensus 128 ~~~~v~--~~~~~~~~i~~A~~~A~~~pGPv~l~iP~ 162 (174)
T d2ez9a2 128 YNVTAV--NAATLPHVIDEAIRRAYAHQGVAVVQIPV 162 (174)
T ss_dssp EEEECC--CSTTHHHHHHHHHHHHHHHTSEEEEEEET
T ss_pred cccccc--cHHHHHHHHHHHHHHHhCCCCCEEEEeCc
Confidence 556665 66666777777777666678999999853
|
| >d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=95.55 E-value=0.036 Score=46.66 Aligned_cols=107 Identities=18% Similarity=0.157 Sum_probs=72.9
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCc-ceeeecccccCCcCHHHHHhhcC
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~-~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
-+|-|.+.. .++-.++++..|=|.++ ..-++..|...+.|+|+|.-+... .... .......|..+.++.+-
T Consensus 51 ~~A~gyar~---tg~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~--~~~~q~~d~~~~~~~~t 122 (186)
T d2ihta2 51 VAADVLARI---TGRPQACWATLGPGMTN---LSTGIATSVLDRSPVIALAAQSESHDIFP--NDTHQCLDSVAIVAPMS 122 (186)
T ss_dssp HHHHHHHHH---HCSCEEEEECTTHHHHH---HHHHHHHHHHHTCCEEEEEEESCGGGCCT--TTSTTCCCHHHHHGGGS
T ss_pred HHHHHHhhc---cCCcceeeccccccccc---hhhhhhHHHHhhccceeeeccCcchhccc--cccccccccccccCCce
Confidence 345555544 34445566666777775 345677788889999999865432 2111 11222357778899887
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
-...+|. +++++.+.+++|+..++.+ .||+.|++-.
T Consensus 123 k~~~~v~--~~~~i~~~l~~A~~~a~s~~~GPv~l~iP~ 159 (186)
T d2ihta2 123 KYAVELQ--RPHEITDLVDSAVNAAMTEPVGPSFISLPV 159 (186)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHTBSSCCCEEEEEEH
T ss_pred eeccccC--CchhhhhHHHHHHHHHhcCCCeeEEEEeCH
Confidence 7788887 8888889999999888765 4799999864
|
| >d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=95.51 E-value=0.033 Score=47.38 Aligned_cols=107 Identities=20% Similarity=0.186 Sum_probs=73.3
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|.-+....... .......+....++.+--
T Consensus 64 ~mAdgyar~t---g~~gv~~~t~GpG~~N---~~~gl~~A~~~~~Pvlvi~g~~~~~~~~--~~~~q~~d~~~~~~~~tk 135 (195)
T d1ybha2 64 FAAEGYARSS---GKPGICIATSGPGATN---LVSGLADALLDSVPLVAITGQVPRRMIG--TDAFQETPIVEVTRSITK 135 (195)
T ss_dssp HHHHHHHHHH---SSCEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTT--TTCTTCCCHHHHHGGGSS
T ss_pred HHHHHHHHHH---CCCeEEEEecChHHHH---HHHHHHHHHHcCCCEEEEecCCcHHHhc--cCcccccchhhhhccccc
Confidence 4566666553 4445666667778876 3456778889999999998765432211 112223456677777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
...+|. +++++.+++++|+..+..+ .||+.|++-.
T Consensus 136 ~~~~v~--~~~~~~~~~~~A~~~a~~~r~GPV~l~iP~ 171 (195)
T d1ybha2 136 HNYLVM--DVEDIPRIIEEAFFLATSGRPGPVLVDVPK 171 (195)
T ss_dssp EEEECC--CGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred chhhcc--hHhhcchHHHHHHHHHhcCCCCcEEEECCh
Confidence 667776 8888889999999888876 5799999854
|
| >d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: PFOR Pyr module domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain I species: Desulfovibrio africanus [TaxId: 873]
Probab=95.01 E-value=0.057 Score=47.91 Aligned_cols=113 Identities=16% Similarity=0.069 Sum_probs=75.4
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
+..++|++++ +.+++++..-.++. ...|.|..|.-.++|+|+++-+.....+. ...+....|+ -.++..|
T Consensus 67 ~~~~~Ga~~a------G~r~~t~ts~~Gl~--~m~e~l~~a~~~~~P~V~~v~~r~~~~~~-~~~~~~q~d~-~~~~~~g 136 (257)
T d2c42a1 67 AGAVHGALAA------GALTTTFTASQGLL--LMIPNMYKISGELLPGVFHVTARAIAAHA-LSIFGDHQDI-YAARQTG 136 (257)
T ss_dssp HHHHHHHHHT------TCCEEEEECHHHHH--HHHHHHHHHHHTTCCCEEEEEECCCCSSS-BCCSCCSHHH-HTTTTSS
T ss_pred HHHHHHHHhc------CCCeEEEecchHHH--HHHHHHHHHHhcCCceEEEEEecCCCCCC-CccccchHHH-HHHHhcc
Confidence 6677777765 34455555444443 46788999999999987777665443211 1111111122 1345668
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 274 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~ 274 (380)
|+.+... ++.+.++-...|.+.+.+.+.|+++-...+|. +|..
T Consensus 137 ~~~l~~~--s~QEa~d~~~~A~~lae~~~~Pv~~~~Dg~~~-sh~~ 179 (257)
T d2c42a1 137 FAMLASS--SVQEAHDMALVAHLAAIESNVPFMHFFDGFRT-SHEI 179 (257)
T ss_dssp CEEEECC--SHHHHHHHHHHHHHHHHHHCCCEEEEEETTTT-TTCE
T ss_pred eEEEecC--CHHHHHHHHHHHHHHHHHhCCCEEEEeccchh-cCCc
Confidence 8887765 99999999999998888888999998888886 4654
|
| >d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=94.37 E-value=0.033 Score=46.70 Aligned_cols=108 Identities=20% Similarity=0.075 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.. .++-.++++..|=|.++ ..-+|..|...+.|||+|.-+-........ ..+...|....++.+--
T Consensus 51 ~mA~gyar~---tgk~~v~~~~~GpG~~n---~~~gl~~A~~~~~Pvlvi~g~~~~~~~g~~-~~~q~~D~~~~~~~~tK 123 (180)
T d1q6za2 51 GIADGYAQA---SRKPAFINLHSAAGTGN---AMGALSNAWNSHSPLIVTAGQQTRAMIGVE-ALLTNVDAANLPRPLVK 123 (180)
T ss_dssp HHHHHHHHH---HTSCEEEEEEHHHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHTTT-CTTCCTTGGGSSTTSCS
T ss_pred HHHHHHhhh---ccCcceEEecccccccc---ccceeHhhhhcccceeeecccccccccccc-ccchhhheeeccccccc
Confidence 456666554 34555667777777775 235677788899999999876443221111 01112244444554433
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
...+|. +++++.+.+++|+..++.+ .||+.|++-.
T Consensus 124 ~~~~v~--~~~~i~~~l~~A~~~a~~~~~GPv~l~iP~ 159 (180)
T d1q6za2 124 WSYEPA--SAAEVPHAMSRAIHMASMAPQGPVYLSVPY 159 (180)
T ss_dssp CEECCS--SGGGHHHHHHHHHHHHHSSSCCCEEEEEEG
T ss_pred ccccCC--CHHHHHHHHHHHHHHHhcCCCccEEEEcCh
Confidence 355665 7888888889988887766 5799999864
|
| >d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Leishmania mexicana mexicana [TaxId: 44270]
Probab=93.74 E-value=0.24 Score=41.63 Aligned_cols=113 Identities=12% Similarity=0.008 Sum_probs=74.3
Q ss_pred ccccccccCc-cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCC
Q 016909 139 FTVSSTIATQ-LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRS 217 (380)
Q Consensus 139 ~~~~g~lG~~-~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~ 217 (380)
+...|+-.+. +.+|.|.|+.. .-..+++++ ..|. ...++.+..+...++||++|....++..........+.
T Consensus 66 ~i~~GIaEqnm~~iAaGla~~~----g~~p~~~t~--~~F~-~r~~~~ir~~~~~~~~v~~v~~~~g~~~g~dG~THq~i 138 (190)
T d1r9ja1 66 YIRFGVREHAMCAILNGLDAHD----GIIPFGGTF--LNFI-GYALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPV 138 (190)
T ss_dssp EEECCSCHHHHHHHHHHHHHHS----SCEEEEEEE--GGGG-GGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCS
T ss_pred eeeeccchhhHHHHHHHHHHcC----CcceEEecc--hhhh-ccchHHHHHhcccCCceEEEEecCccccCCCCcchhHH
Confidence 4456777765 67787887642 223344443 2333 33466688888999999999998887665444444455
Q ss_pred cCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 218 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 218 ~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
+|++-.-.--++.++.-- |..++..+++.|++. .++|+.|-
T Consensus 139 eDla~~R~iPn~~V~~Pa--D~~E~~~al~~a~~~---~~gP~yiR 179 (190)
T d1r9ja1 139 ELVAALRAMPNLQVIRPS--DQTETSGAWAVALSS---IHTPTVLC 179 (190)
T ss_dssp SHHHHHHHSTTCEEECCS--SHHHHHHHHHHHHHC---TTCCEEEE
T ss_pred HHHHHHHhcCCEEEEecC--CHHHHHHHHHHHHHc---CCCCEEEE
Confidence 666543333378777644 888999999988863 68999874
|
| >d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Escherichia coli [TaxId: 562]
Probab=92.91 E-value=0.26 Score=41.66 Aligned_cols=112 Identities=9% Similarity=-0.047 Sum_probs=69.0
Q ss_pred cccccccCc-cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCc
Q 016909 140 TVSSTIATQ-LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSD 218 (380)
Q Consensus 140 ~~~g~lG~~-~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~ 218 (380)
...|+-.+. +++|.|+|... .-..++.++ .+......+.+.++..+++++++|+...+.+.........+.+
T Consensus 73 i~~GIaEq~M~~iAaGlA~~g----~~~p~~stf---~~f~~~~~~~ir~~~~~~~~~v~v~~h~g~~~g~dG~THq~iE 145 (195)
T d2r8oa1 73 IHYGVREFGMTAIANGISLHG----GFLPYTSTF---LMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVE 145 (195)
T ss_dssp EECCSCHHHHHHHHHHHHHHS----SCEEEEEEE---GGGGGTTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSS
T ss_pred eeeeeehhhHHHHHHHHHhhC----CceEEeecc---eeeeccccchhhccccccccceeeeccccccccccchhhHHHH
Confidence 344555543 56677887642 112222222 3333456788999999999877888777765543333334455
Q ss_pred CHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 219 GAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 219 ~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
|++-.-.--|+.+++-- |..++..+++.|++. .++|+.|-
T Consensus 146 Dia~lR~iPn~~v~~P~--D~~E~~~a~~~a~~~---~~gP~ylR 185 (195)
T d2r8oa1 146 QVASLRVTPNMSTWRPC--DQVESAVAWKYGVER---QDGPTALI 185 (195)
T ss_dssp HHHHHHTSTTCEEECCS--SHHHHHHHHHHHHHC---SSSCEEEE
T ss_pred HHHHHHhhCCcEEEecC--CHHHHHHHHHHHHHc---CCCCEEEE
Confidence 65543333377777644 888899999888863 57898873
|
| >d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.78 E-value=0.18 Score=42.72 Aligned_cols=104 Identities=13% Similarity=0.030 Sum_probs=64.0
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
+++|.|+|+. |..-++++.. =..|... ....+..++..++||++|...-++..........+.+|++-.-.--|
T Consensus 85 ~~iaaGlA~~----G~~~~p~~~t-~~~f~~~-~~~~~~~~~~~~~~v~~v~t~~g~~~g~dG~THq~ieDia~~r~iPn 158 (197)
T d1gpua2 85 GAIMNGISAF----GANYKPYGGT-FLNFVSY-AAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPN 158 (197)
T ss_dssp HHHHHHHHHH----CTTCEEEEEE-EHHHHGG-GHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSSS
T ss_pred HHHHHHHHHc----CCceeEEEEe-ehhhhhh-hHHHHHHhhhcCCceEEEEecccccccccccchhhHHHHHHHhcCCC
Confidence 4667777765 2221222211 1233332 34567778889999999999888766543333344555543333336
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
+.++.-- |..++..+++.|++. .+||+.|-
T Consensus 159 ~~v~~Pa--D~~e~~~a~~~a~~~---~~gP~yiR 188 (197)
T d1gpua2 159 IQVWRPA--DGNEVSAAYKNSLES---KHTPSIIA 188 (197)
T ss_dssp CEEECCC--SHHHHHHHHHHHHHC---SSCCEEEE
T ss_pred cEEEecC--CHHHHHHHHHHHHHc---CCCCEEEE
Confidence 6666533 888888899888864 57899884
|
| >d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=90.22 E-value=0.46 Score=38.97 Aligned_cols=106 Identities=21% Similarity=0.080 Sum_probs=59.2
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeec---cc---ccCCcCHHH
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SD---QFRSDGAVV 222 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~---~~---~~~~~~~~~ 222 (380)
.-+|.|.|... +. ..|++..|=|.++ ..-+|.-|...++|||+|.-.......... .. .....++..
T Consensus 54 ~~~A~gyar~t---~~-~~v~~t~GpG~~n---~~~gl~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (178)
T d1ovma2 54 SYAADGYARCK---GF-AALLTTFGVGELS---AMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYH 126 (178)
T ss_dssp HHHHHHHHHHH---SC-EEEEEETTHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHH
T ss_pred HHHHHHHHhcC---CC-ceEEeeccccccc---cchhhhHHHhcCccEEEEecCCCchhhccccccccccccchhhhccc
Confidence 34556665542 22 3455666777664 245677788899999999865432211110 00 111234556
Q ss_pred HHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
.++.+--....++ +..++.+..+.+...++ .++|+.|++
T Consensus 127 ~~~~~tk~~~~v~--~~~~~~~~~~~~~~a~~-~~~Pv~i~i 165 (178)
T d1ovma2 127 MSEPITVAQAVLT--EQNACYEIDRVLTTMLR-ERRPGYLML 165 (178)
T ss_dssp HTGGGCSEEEECC--TTTHHHHHHHHHHHHHH-HTCCEEEEE
T ss_pred cccccceeEEEeC--cHHHHHHHHHHHHHHHh-CCCCEEEEE
Confidence 6776655566666 44455554444433333 468999987
|
| >d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.96 E-value=0.51 Score=39.58 Aligned_cols=101 Identities=18% Similarity=0.119 Sum_probs=61.1
Q ss_pred CccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHH--------cCCCEEEEEEcCCcceeeecccccCCc
Q 016909 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAV--------TEAPVIFICRNNGWAISTPISDQFRSD 218 (380)
Q Consensus 147 ~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~--------~~Lpvi~vv~NN~~~i~~~~~~~~~~~ 218 (380)
..++.|+|+|++ +.+.|+.+==..|..=.+.+-.|.|+. +++|+|+.+-.....-..+.+.+
T Consensus 62 ~~~G~a~G~A~~------G~rPive~~~~df~~~a~dqi~n~~ak~~~~~~g~~~~pvvir~~~g~~~g~g~~Hs~---- 131 (192)
T d2ozlb1 62 GFAGIAVGAAMA------GLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQ---- 131 (192)
T ss_dssp HHHHHHHHHHHT------TCEEEEECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEECSCCSSCCGGGCC----
T ss_pred HHHHHHHHHHhc------CCceEEEEEeccchhhhHHHHHhhhhhhhhhhCCcccceEEEEeccCCCCCccccccc----
Confidence 446778888875 233333332233333345555566652 55688888876655444443322
Q ss_pred CHHHHHhhc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 219 GAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 219 ~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
++...+..+ |++++.-. ++.+.+..++.|++ .+.|+++-
T Consensus 132 ~~~~~~~~~PGl~Vv~Ps--~p~da~gll~~Ai~----~~~Pvi~~ 171 (192)
T d2ozlb1 132 CFAAWYGHCPGLKVVSPW--NSEDAKGLIKSAIR----DNNPVVVL 171 (192)
T ss_dssp CCHHHHHTSTTCEEECCC--SHHHHHHHHHHHHH----SSSCEEEE
T ss_pred chHHhhccCCceEEEecC--CHHHHHHHHHHHHh----CCCCEEEE
Confidence 233444444 77777655 99999999999997 47899763
|
| >d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Maize (Zea mays) [TaxId: 4577]
Probab=89.57 E-value=0.82 Score=38.27 Aligned_cols=104 Identities=16% Similarity=0.107 Sum_probs=64.5
Q ss_pred cHHHHHHHHHhhhcCCCce-eEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhc
Q 016909 149 LPHAVGAAYALKMDRKDAC-AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~-vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~ 227 (380)
+++|.|+|+. +.+.+ +++.+ ..|... ....+..++..++|+++|...-+++.........+.+|++-.-.--
T Consensus 80 ~~iAaGlA~~----~~G~~p~~~tf--~~F~~~-~~~~~~~~~~~~~~v~~v~~~~g~~~g~dG~TH~~ieDia~~r~iP 152 (192)
T d1itza2 80 GAICNGIALH----SPGFVPYCATF--FVFTDY-MRGAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMP 152 (192)
T ss_dssp HHHHHHHHTT----CTTCEEEEEEE--GGGHHH-HHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHSSS
T ss_pred HHHHHHHHHh----cCCCEEEEEEE--hhhhhh-ccchhhhhccccccceEEEecCCcccccCCcccHHHHHHHHHhCcC
Confidence 4566666652 12222 33333 344333 3456778888999999999888876654433334455554333333
Q ss_pred CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
|+.++.-- |..++..+++.|+.. .++|+.|-+
T Consensus 153 n~~v~~P~--d~~e~~~~~~~a~~~---~~gP~yiRl 184 (192)
T d1itza2 153 NILMLRPA--DGNETAGAYKVAVLN---RKRPSILAL 184 (192)
T ss_dssp SCEEECCC--SHHHHHHHHHHHHHC---TTSCEEEEE
T ss_pred CceEEecC--CHHHHHHHHHHHHHc---CCCCEEEEE
Confidence 77776644 888999999888753 579998744
|
| >d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: 2-oxoisovalerate dehydrogenase (E1B), Pyr module species: Pseudomonas putida [TaxId: 303]
Probab=88.21 E-value=0.95 Score=38.21 Aligned_cols=102 Identities=15% Similarity=0.041 Sum_probs=59.7
Q ss_pred cCccHHHHHHHHHhhhcCCCceeEEE--eCccccCcchHHHHHHHHH--------HcCCCEEEEEEcCCcceeeeccccc
Q 016909 146 ATQLPHAVGAAYALKMDRKDACAVTY--FGDGGTSEGDFHAALNFSA--------VTEAPVIFICRNNGWAISTPISDQF 215 (380)
Q Consensus 146 G~~~p~AvG~A~A~k~~~~~~~vv~~--~GDG~~~eG~~~Eal~~A~--------~~~Lpvi~vv~NN~~~i~~~~~~~~ 215 (380)
...++.|+|+|++- .++|+. +.|=.+. .+.+-.|-++ .++.|+++..-...+.-..+.+
T Consensus 62 ~~~vG~A~GlA~~G------~rPvve~~~~df~~~--a~dqi~n~~ak~~~~~~~~~~~p~vir~~~g~~~~~g~~H--- 130 (204)
T d1qs0b1 62 SGIVGTAVGMGAYG------LRPVVEIQFADYFYP--ASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGGIYGGQTH--- 130 (204)
T ss_dssp HHHHHHHHHHHHHT------CEEEEECSCGGGCGG--GHHHHHTTTTTHHHHTTTSSCCCCEEEEEECCSSSCCSSS---
T ss_pred eeehhHHHHHhcCC------CcEEEEEEecchhhH--HHHHHHHHHHHhhcccccCcccceEEEcCcccccCccccc---
Confidence 34467899998872 344444 4444442 3344446554 2345777776554333333322
Q ss_pred CCcCHHHHHhhc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016909 216 RSDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 216 ~~~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~ 265 (380)
+..+. ..+..+ |+.++.- .|+.+.+..++.|++ .++|+++--.
T Consensus 131 s~~~~-s~~~~iPgl~Vv~P--s~~~da~~ll~~a~~----~~~Pvi~~e~ 174 (204)
T d1qs0b1 131 SQSPE-AMFTQVCGLRTVMP--SNPYDAKGLLIASIE----CDDPVIFLEP 174 (204)
T ss_dssp SCCCH-HHHTTSTTCEEECC--CSHHHHHHHHHHHHH----SSSCEEEEEE
T ss_pred ccCHH-HHHhcCCCcEEEee--CCHHHHHHHHHHHHh----CCCcEEEEee
Confidence 22233 455554 7766654 489999999999987 4889977544
|
| >d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: Branched-chain alpha-keto acid dehydrogenase, Pyr module species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.98 E-value=1.2 Score=37.65 Aligned_cols=102 Identities=11% Similarity=0.017 Sum_probs=57.6
Q ss_pred cCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHc--------CCCEEEE-EEcCCcceeeecccccC
Q 016909 146 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--------EAPVIFI-CRNNGWAISTPISDQFR 216 (380)
Q Consensus 146 G~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~--------~Lpvi~v-v~NN~~~i~~~~~~~~~ 216 (380)
...++.|+|+|++- .+.|+-+-=+.|..-.+.+-.|.++.+ +.|++++ .--..++...+.+.
T Consensus 76 ~~~~G~a~G~A~~G------~rPive~~f~dF~~~a~dqi~n~~ak~~~~~~g~~~~~~vv~~~~~g~~~~g~~~HS--- 146 (203)
T d2bfdb1 76 QGIVGFGIGIAVTG------ATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHS--- 146 (203)
T ss_dssp HHHHHHHHHHHHTT------CCEEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCCSSCGGGSS---
T ss_pred ceecchhhhhhhcc------cceEEEEEehhhhhhhHHHHHHHHhhhhcccCCccccccceeeeccccCcccccccc---
Confidence 34466788888762 233433333334333455666776652 3444443 33333332222222
Q ss_pred CcCHHHHHhhc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 217 SDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 217 ~~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
.++...+..+ |++++.-. ++.+.+..++.|++ .+.|+++-
T Consensus 147 -q~~~~~~~~~PGl~Vv~Ps--~p~Da~gll~~ai~----~~~Pvi~~ 187 (203)
T d2bfdb1 147 -QSPEAFFAHCPGIKVVIPR--SPFQAKGLLLSCIE----DKNPCIFF 187 (203)
T ss_dssp -CCCHHHHHTSTTCEEECCS--SHHHHHHHHHHHHH----SSSCEEEE
T ss_pred -ccHHHHHcCCCCcEEEecC--CHHHHHHHHHHHHh----CCCcEEEE
Confidence 2234444444 77777655 99999999999986 47898774
|
| >d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=81.55 E-value=3.7 Score=33.90 Aligned_cols=103 Identities=17% Similarity=0.037 Sum_probs=56.5
Q ss_pred cCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHH--------cCCCEEEEEEcCCcceeeecccccCC
Q 016909 146 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAV--------TEAPVIFICRNNGWAISTPISDQFRS 217 (380)
Q Consensus 146 G~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~--------~~Lpvi~vv~NN~~~i~~~~~~~~~~ 217 (380)
...++.|+|+|++ +...++...+.|-.+. .+.+-.|-++. ++.|+++-+-.....-..+ . ++
T Consensus 65 ~~~~G~a~GlA~~----G~rPive~~~~df~~~--a~dQi~n~~ak~~~~s~g~~~~p~vir~~~G~~~~gg~-~--Hs- 134 (191)
T d1ik6a1 65 GGILGFAMGMAMA----GLKPVAEIQFVDFIWL--GADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGL-Y--HS- 134 (191)
T ss_dssp HHHHHHHHHHHHT----TCEEEEECCCC----C--CHHHHHHHHHHHHC------CCCCEEEEEECC-------------
T ss_pred hHHHHHHHHHHHh----cCceEEEEEecchhHH--HHHHHHHHHHHHHHhcCCccccccceeecccCCCCCcc-c--cc-
Confidence 3446778888875 2223333346666553 24455666654 3568888776543322222 1 11
Q ss_pred cCHHHHHhhc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 218 DGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 218 ~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
.+....+..+ |+.++.-. |+.+.+..++.|++ .++|+++.-
T Consensus 135 ~~~~a~~~~iPgl~Vv~Ps--~p~da~~ll~~al~----~~~Pv~~~e 176 (191)
T d1ik6a1 135 NSPEAIFVHTPGLVVVMPS--TPYNAKGLLKAAIR----GDDPVVFLE 176 (191)
T ss_dssp --HHHHHHTCTTCEEECCC--SHHHHHHHHHHHHH----SSSCEEEEE
T ss_pred CCHHHHHHHhhcccEEecC--CHHHHHHHHHHHHh----CCCcEEEEE
Confidence 2344555555 77777655 99999999999987 478997743
|
| >d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.79 E-value=3 Score=34.68 Aligned_cols=103 Identities=11% Similarity=-0.003 Sum_probs=61.1
Q ss_pred ccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHH--------cCCCEEEEEEcCCcceeeecccccC
Q 016909 145 IATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAV--------TEAPVIFICRNNGWAISTPISDQFR 216 (380)
Q Consensus 145 lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~--------~~Lpvi~vv~NN~~~i~~~~~~~~~ 216 (380)
=...++.|+|+|++ +.+.|+.+-=..|.-=.+.+-+|.|+. ++.|+|+-+-.....-..+.+.+
T Consensus 59 E~~~~G~a~G~Al~------G~rpIve~~~~dF~~~a~dqi~n~aak~~~~sgg~~~~P~viR~~~G~g~~~g~~HSq-- 130 (192)
T d1w85b1 59 ESGIGGLAIGLALQ------GFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGGVHTPELHSD-- 130 (192)
T ss_dssp HHHHHHHHHHHHHT------TCEEEEBCSSGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEEECSSSCCCTTSSC--
T ss_pred ccchHHHHHHHHhc------cCceEEEEEeccchhHHHHHHHHHHhhcchhcCCccccceEEEeccccccCCcccccc--
Confidence 33446778888875 234444433333322234444566654 35698887766554433443332
Q ss_pred CcCHHHHHhhc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 217 SDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 217 ~~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
++...+..+ |++++.-. ++.+.+..++.|++ .+.|+++-
T Consensus 131 --s~e~~f~~~PGlkVv~Ps--~p~Da~gll~~Ai~----~~~Pvi~~ 170 (192)
T d1w85b1 131 --SLEGLVAQQPGLKVVIPS--TPYDAKGLLISAIR----DNDPVIFL 170 (192)
T ss_dssp --CCHHHHTTSTTCEEECCS--SHHHHHHHHHHHHH----SSSCEEEE
T ss_pred --CHHHHhhcCCCeeEEeeC--CHHHHHHHHHHHHh----CCCCEEEE
Confidence 344455444 77776544 89999999999986 47898654
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