Citrus Sinensis ID: 016943

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380
Protein Sequence
MAFVFGLSPTSLFFSSSSKNQNPKPLLFFSAKSKTHSSLSFSKPNNNNNSKKCKTHLALRLRSSSQPDPVPEPDSEPSKTPVTITDEWGEKTELEAEEQEPTRMADSDPPKDEDEWEEKEEEYDGGTDNGSAASAASVAATPAAKEVEEYDDKLGDLKRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALNPTPNPVNAAGVLDGNWVLVYTAFSELLPLLAAGAIPLLKVEKICQKIDTSSLTIENSTTLSSPFASFSFSATASFEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGDGGLFVLVKEGSPLLDQ
Secondary Structure (PSIPRED)
ccEEEccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEcccccHHHHHHccccccccccEEEEEcccccEEEEEEEEccccccEEEEEEEEEEEEcccEEEEEEEEEEEccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccEEEEEEEcccEEEEEccccEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccHcHHHccccEEEEEEcHHHHHHHHcccccccEEccEEEEEEEccccEEEEEEEEEcccEEEEEEEEEEEEEccccEEEEEEEEEEEccHHHHcccccccHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEccccEEEcccccEEEEEEcccccccc
Coil and Loop (DISEMBL)
mafvfglsptslffssssknqnpkpllffsakskthsslsfskpnnnnnskkcKTHLALRlrsssqpdpvpepdsepsktpvtitdewgekteleaeeqeptrmadsdppkdedeweekeeeydggtdngsaasaasvaatpaakeVEEYDDKLGDLKRCLVDTvygtelgfragsDVRAEVLELVNQLealnptpnpvnaagvldgNWVLVYTAFSELLPLLAAGAIPLLKVEKICQKIdtssltiensttlsspfasfsfsatasfevrspsriqvqfkegtlqppdikstvdlpgnlnifgqninlspvqqtlSPLQEAVGSisravsgqpplkvpipgertQSWLLITYLdedfrisrgdggLFVLvkegsplldq
Flexible Loop (DISEMBL)
MAFVFGLSPTSLffssssknqnPKPLLFFSAKSKTHSslsfskpnnnnnskKCKTHLALRLRSssqpdpvpepdsepsktpvtitdewgekteleaeeqeptrmadsdppkdedEWEEKEEeydggtdngsAASAASVAATPAAKEVeeyddklgdlKRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALNPTPNPVNAAGVLDGNWVLVYTAFSELLPLLAAGAIPLLKVEKICQKIDTSSLTIENSTTLSSPFASFSFSATASFEVRSPSRIQVQfkegtlqppdiKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRavsgqpplkvpipgertQSWLLITYLDEDFRISRGDGGLFVLvkegsplldq
Low Complexity Region (SEG)
MAFVFGlsptslffssssKNQNPKPLLFFSAKSKTHsslsfskpnnnnnskkckTHLALRLRsssqpdpvpepdsepsKTPVTITDEWGEKTELEAEEQEPTRMADSdppkdedeweekeeeYDGGTDNGsaasaasvaatpaaKEVEEYDDKLGDLKRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALNPTPNPVNAAGVLDGNWVLVYTAFSEllpllaagaipllKVEKICQKIDTSSLTIENsttlsspfasfsfsatasfEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGDGGLFVLVKEGSPLLDQ
Disordered region (IsUnstruct)
******************************************************************************************************************************************************DDKLGDLKRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALNPTPNPVNAAGVLDGNWVLVYTAFSELLPLLAAGAIPLLKVEKICQKIDTSSLTIEN**********F********************************TVDLPGNLNIFGQNINLSP*******************************ERTQSWLLITYLDEDFRISRGDGGLFVLVK********
Disordered Region (DISOPRED)
**F****SPTSLFFSS**********************************************************************************************************************************************RCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALNPTPNPVNAAGVLDGNWVLVYTAFSELLPLLAAGAIPLLKVEKICQKIDTSSLTIENSTTLSSPFASFSFSATASFEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVS***********ERTQSWLLITYLDEDFRISRGDGGLFVLVKEGSPL***
Disordered Region (DISEMBL)
MAFVFGLSPTSLFFSSSSKNQNPKPLLFFSAK**********KPNNNNNSKKCKTHLALRLR********************TITDEWGEKTE*********************************************************DDKLGDLKRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALNPTPNPVNAAGVLDGNWVLVYTAFSELLPLLAAGAIPLLKVEKICQKIDTSSLTIENSTTLSSPFASFSFSATASFEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGDGGLFVLVKEGSPLLDQ
Disordered Region (DISPRO)
MAFVFGLSPTSLFFSS****QNPK*****************************************************************EKTE********************************************************YDDKLGDLKRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALNPTPNPVNAAGVLDGNWVLVYTAFSELLPLLAAGAIPLLKVEKICQKIDTSSLTIENSTTLSSPFASFSFSATASFEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGDGGLFVLVKEGSPLL**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAFVFGLSPTSLFFSSSSKNQNPKPLLFFSAKSKTHSSLSFSKPNNNNNSKKCKTHLALRLRSSSQPDPVPEPDSEPSKTPVTITDEWGEKTELEAEEQEPTRMADSDPPKDEDEWEEKEEEYDGGTDNGSAASAASVAATPAAKEVEEYDDKLGDLKRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALNPTPNPVNAAGVLDGNWVLVYTAFSELLPLLAAGAIPLLKVEKICQKIDTSSLTIENSTTLSSPFASFSFSATASFEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGDGGLFVLVKEGSPLLDQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	380	2.2.26 [Sep-21-2011]
Q94KU5	360	Plastid lipid-associated	N/A	no	0.873	0.922	0.576	1e-107
O82291	376	Probable plastid-lipid-as	yes	no	0.773	0.781	0.635	1e-104
Q9ZP40	358	Plastoglobulin-1, chlorop	N/A	no	0.781	0.829	0.637	2e-91
Q7XBW5	374	Probable plastid-lipid-as	yes	no	0.760	0.772	0.590	5e-89
Q9ZWQ8	323	Plastid-lipid-associated	N/A	no	0.671	0.789	0.477	6e-67
Q94KU6	319	Plastid lipid-associated	N/A	no	0.673	0.802	0.463	4e-65
O49629	310	Probable plastid-lipid-as	no	no	0.655	0.803	0.462	1e-64
O81439	318	Probable plastid-lipid-as	no	no	0.755	0.902	0.413	3e-64
Q6K439	319	Probable plastid-lipid-as	yes	no	0.594	0.708	0.504	8e-63
P80471	326	Light-induced protein, ch	N/A	no	0.813	0.947	0.408	2e-62

>sp|Q94KU5|PAP3_BRACM Plastid lipid-associated protein 3, chloroplastic OS=Brassica campestris GN=PAP3 PE=2 SV=1

 Score =  388 bits (996), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/373 (57%), Positives = 263/373 (70%), Gaps = 41/373 (10%)

Query: 7   LSPTSLFFSSSSKNQNPKPLLFFSAKSKTHSSLSFSKPNNNNNSKKCKTHLALRLRSSSQ 66
           L P +L FS +  ++ P+PL F    SK  SSL    P+ +++  +    +        Q
Sbjct: 28  LKPNALSFSLT-HHRPPRPLRF----SKIRSSL----PSESDSEPEGGYSITDEW--GEQ 76

Query: 67  PDPVPEPDSEPSKTPVTITDEWGEKTELEAEEQEPTRMADSDPPKDEDEWEEKEEEYDGG 126
           P    EP+S P   P  ++DEWGEK+E    E+  TR A+SDPP +EDEWEE+E      
Sbjct: 77  PA---EPESPPDNAPSAVSDEWGEKSE-SVPEESVTRFAESDPPTNEDEWEERE------ 126

Query: 127 TDNGSAASAASVAATPAAKEVEEYDDKLGDLKRCLVDTVYGTELGFRAGSDVRAEVLELV 186
            D+G                     DK  +LKRCL DTVYGTELGFRAGS+VRAEVLE+V
Sbjct: 127 ADDGV--------------------DKTWELKRCLADTVYGTELGFRAGSEVRAEVLEIV 166

Query: 187 NQLEALNPTPNPVNAAGVLDGNWVLVYTAFSELLPLLAAGAIPLLKVEKICQKIDTSSLT 246
           NQLEALNPT  PV    +LDGNWVL+YTAFSELLPLLAAG+ PLLKV+ I Q IDT SL+
Sbjct: 167 NQLEALNPTQAPVENPELLDGNWVLLYTAFSELLPLLAAGSTPLLKVKSISQSIDTKSLS 226

Query: 247 IENSTTLSSPFASFSFSATASFEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQN 306
           I+NSTTLSSPFA FSFSATASFEVR+PSRI+V FKEGTL+PP+IKS+VDLP ++ +FGQ 
Sbjct: 227 IDNSTTLSSPFADFSFSATASFEVRTPSRIEVSFKEGTLKPPEIKSSVDLPESVGVFGQE 286

Query: 307 INLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGDGG 366
           INLS ++Q+L+PLQ+   +ISRA+SGQPPLK+P PG R  SWLL TYLD+D RISRGDGG
Sbjct: 287 INLSFLKQSLNPLQDVAANISRAISGQPPLKLPFPGNRGSSWLLTTYLDKDLRISRGDGG 346

Query: 367 LFVLVKEGSPLLD 379
           LFVL +EGS LL+
Sbjct: 347 LFVLAREGSSLLE 359

Brassica campestris (taxid: 3711)

>sp|O82291|PAP3_ARATH Probable plastid-lipid-associated protein 3, chloroplastic OS=Arabidopsis thaliana GN=PAP3 PE=1 SV=1

 Score =  380 bits (975), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/318 (63%), Positives = 240/318 (75%), Gaps = 24/318 (7%)

Query: 66  QPDPVPEPDSEPSKTPV-TITDEWGEKTELEAEEQEPTRMADSDPPKDEDEWEEK---EE 121
           +P    EPDS+P    V  ITDEWGEK+  E EE   TR  +SDPP++EDEW  +   E 
Sbjct: 78  KPGDANEPDSQPDNVTVNVITDEWGEKSGPELEESG-TRFMESDPPRNEDEWGGEIGGET 136

Query: 122 EYDGGTDNGSAASAASVAATPAAKEVEEYDDKLGDLKRCLVDTVYGTELGFRAGSDVRAE 181
           E D G  NGSA S                 D   +LKRCL D+VYGTELGF+AGS+VRAE
Sbjct: 137 EADAG--NGSAVS-----------------DPTWELKRCLADSVYGTELGFKAGSEVRAE 177

Query: 182 VLELVNQLEALNPTPNPVNAAGVLDGNWVLVYTAFSELLPLLAAGAIPLLKVEKICQKID 241
           VLELVNQLEALNPTP P+    +LDGNWVL+YTAFSEL+PLLAAG+ PLLKV+ I Q ID
Sbjct: 178 VLELVNQLEALNPTPAPLENPELLDGNWVLLYTAFSELIPLLAAGSTPLLKVKSISQSID 237

Query: 242 TSSLTIENSTTLSSPFASFSFSATASFEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLN 301
           T++L I+NSTTLSSPFA FSFSATASFEVRSPSRI+V FKEGTL+PP IKS+VDLP ++ 
Sbjct: 238 TNNLIIDNSTTLSSPFADFSFSATASFEVRSPSRIEVSFKEGTLKPPVIKSSVDLPESVG 297

Query: 302 IFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRIS 361
           +FGQ I+LS ++Q+L+PLQ+   +ISRA+SGQPPLK+P PG R  SWLL TYLD+D RIS
Sbjct: 298 VFGQQISLSLLKQSLNPLQDVAANISRALSGQPPLKLPFPGNRGSSWLLTTYLDKDLRIS 357

Query: 362 RGDGGLFVLVKEGSPLLD 379
           RGDGGLFVL +EGS LL+
Sbjct: 358 RGDGGLFVLAREGSSLLE 375

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZP40|PG1_PEA Plastoglobulin-1, chloroplastic OS=Pisum sativum GN=PG1 PE=1 SV=1

 Score =  336 bits (862), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 190/298 (63%), Positives = 228/298 (76%), Gaps = 1/298 (0%)

Query: 84  ITDEWGEKTELEAEEQEPTRMADSDPPKDEDEWEEKEEEYDGG-TDNGSAASAASVAATP 142
           I+DEWGE +E E +     ++ DSDPPKDEDEW +      G   D G+     +  A+P
Sbjct: 61  ISDEWGEGSEPETKPFTYFKLPDSDPPKDEDEWGKGAAAGAGSYNDAGNGTPTFAAEASP 120

Query: 143 AAKEVEEYDDKLGDLKRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALNPTPNPVNAA 202
            A+  +  D+ L  LKR LVDTVYGTELGFRA S+VRAEV E V QLEA NPTP PV   
Sbjct: 121 EAEAEDGVDENLEGLKRSLVDTVYGTELGFRARSEVRAEVSEFVAQLEAANPTPAPVEEP 180

Query: 203 GVLDGNWVLVYTAFSELLPLLAAGAIPLLKVEKICQKIDTSSLTIENSTTLSSPFASFSF 262
            +L+GNWVL+YTA SELLPLLAAG++PLLK++KI Q IDT S T+ NSTTLSSPFASFSF
Sbjct: 181 DLLNGNWVLLYTASSELLPLLAAGSLPLLKLDKISQTIDTDSFTVVNSTTLSSPFASFSF 240

Query: 263 SATASFEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEA 322
           S +ASFEVRSP+RIQV FKEG+LQPP+IKS +DLP N+NIFGQ ++L P+ Q+L PL+  
Sbjct: 241 SVSASFEVRSPTRIQVTFKEGSLQPPEIKSKIDLPENINIFGQQLSLGPLLQSLGPLENV 300

Query: 323 VGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGDGGLFVLVKEGSPLLDQ 380
           V +ISR +SGQ PLK+PIPGERT SWL+ TYLD+D RISRGDGGLFVL +EGS LLDQ
Sbjct: 301 VANISRVISGQSPLKIPIPGERTSSWLITTYLDKDLRISRGDGGLFVLAREGSSLLDQ 358

May form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.

Pisum sativum (taxid: 3888)

>sp|Q7XBW5|PAP3_ORYSJ Probable plastid-lipid-associated protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP3 PE=3 SV=1

 Score =  328 bits (840), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 183/310 (59%), Positives = 225/310 (72%), Gaps = 21/310 (6%)

Query: 72  EPDSEPSKTPVTITDEWGEKTELEAEEQEPTRMADSDPPKDEDEWEEKEEEYDGGTDNGS 131
           +P +  +  PV +TDEWGE         EP   + +DPP ++DEW        GG     
Sbjct: 84  DPSASGNSRPVLVTDEWGEPGV-----PEPQSTSAADPPTNDDEW--------GGDPAPP 130

Query: 132 AASAASVAATPAAKEVEEYDDKLGDLKRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEA 191
                        +  EE       LKRCLVDTVYG++LGFRA S+VR EVLELV QLEA
Sbjct: 131 PPPPPVPEEDNEEERREE-------LKRCLVDTVYGSDLGFRASSEVRGEVLELVTQLEA 183

Query: 192 LNPTPNPVNAAGVLDGNWVLVYTAFSELLPLLAAGAIPLLKVEKICQKIDTSSLTIENST 251
            NPTP PV A  +L GNW+L+YTA+SELLP+LA GA PL KV++I Q+IDT+S+TI N++
Sbjct: 184 TNPTPEPVQATHLLAGNWILIYTAYSELLPILAVGAAPLFKVDEISQEIDTNSMTIVNAS 243

Query: 252 TLSSPFASFSFSATASFEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSP 311
           T+SSPFASFSFSATASF+V+SPSRI+VQFKEG+ QPP I S+VDLP  ++IFGQ I+L P
Sbjct: 244 TISSPFASFSFSATASFDVQSPSRIEVQFKEGSFQPPKISSSVDLPAEVDIFGQKISLGP 303

Query: 312 VQQTLSPLQEAVGSISRAVSGQPPLKVPIPG-ERTQSWLLITYLDEDFRISRGDGGLFVL 370
           VQQ L+PLQ+A  SI+ ++SGQPPLK+PIPG  R +SWLL TYLD+D RISRGDGGLF+L
Sbjct: 304 VQQVLNPLQQAFASIAGSISGQPPLKLPIPGNNRARSWLLTTYLDKDLRISRGDGGLFIL 363

Query: 371 VKEGSPLLDQ 380
           VKEGSPLLDQ
Sbjct: 364 VKEGSPLLDQ 373

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZWQ8|PAP_CITUN Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu GN=PAP PE=2 SV=1

 Score =  254 bits (650), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 128/268 (47%), Positives = 175/268 (65%), Gaps = 13/268 (4%)

Query: 112 DEDEWEEKEEEYDGGTDNGSAASAASVAATPAAKEVEEYDDKLGDLKRCLVDTVYGTELG 171
           D+DEW  ++E+  GG        A +VA   + KEV E D+    LK+ LVD+ YGT+ G
Sbjct: 66  DDDEWGPEKEKEGGG--------ALAVAEEESPKEVTEIDN----LKKALVDSFYGTDRG 113

Query: 172 FRAGSDVRAEVLELVNQLEALNPTPNPVNAAGVLDGNWVLVYTAFSELLPLLAAGAIPLL 231
             A S+ RAE++EL+ QLEA NPTP P  A  +L+  W+LVYT+FS L PLL+ G +PL 
Sbjct: 114 LNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLA 173

Query: 232 KVEKICQKIDTSSLTIENSTTLSSPFASFSFSATASFEVRSPSRIQVQFKEGTLQPPDIK 291
           +VE+I Q ID+ + T++NS   + P A+ S S  A FEVRSP R+Q++F+EG +  P + 
Sbjct: 174 RVEEISQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSPKRVQIKFEEGVIGTPQVT 233

Query: 292 STVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLI 351
            ++ LP N+   GQ I+LSP +  LS +Q+   S+++ +S QPPLK  I     QSWLL 
Sbjct: 234 DSLVLPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLT 293

Query: 352 TYLDEDFRISRGDGG-LFVLVKEGSPLL 378
           TYLDED RISR D G +FV +KEGSPLL
Sbjct: 294 TYLDEDLRISRADAGSVFVFIKEGSPLL 321

Citrus unshiu (taxid: 55188)

>sp|Q94KU6|PAP2_BRACM Plastid lipid-associated protein 2, chloroplastic OS=Brassica campestris GN=PAP2 PE=1 SV=1

 Score =  248 bits (634), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 122/263 (46%), Positives = 179/263 (68%), Gaps = 7/263 (2%)

Query: 118 EKEEEYDGGTDNGSAASAASVAATPAAKEVEEYDDKLGDLKRCLVDTVYGTELGFRAGSD 177
           + E+E D  T  G  +  A + A  A + VEE +     LKR LVD++YGT+ G  A S+
Sbjct: 62  DAEDELDPETSEGGGS--ALLMAEEAIESVEETEV----LKRSLVDSLYGTDRGLSASSE 115

Query: 178 VRAEVLELVNQLEALNPTPNPVNAAGVLDGNWVLVYTAFSELLPLLAAGAIPLLKVEKIC 237
            RAE+ +L+ QLE+ NPTP P +A  +L+G W+L YT+F  L PLL+ G +PL+KV++I 
Sbjct: 116 TRAEIGDLITQLESKNPTPAPTDALFLLNGKWILAYTSFVGLFPLLSRGIVPLVKVDEIS 175

Query: 238 QKIDTSSLTIENSTTLSSPFASFSFSATASFEVRSPSRIQVQFKEGTLQPPDIKSTVDLP 297
           Q ID+ + T+ENS   + P A+ S S  A FE+RSP R+Q++F+EG +  P +  ++++P
Sbjct: 176 QTIDSDNFTVENSVLFAGPLATTSISTNAKFEIRSPKRVQIKFEEGVIGTPQLTDSIEIP 235

Query: 298 GNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDED 357
             +   GQ I+L+P++  L+ +Q+   S++R +S QPPLK  +PG+  QSWLL TYLD+D
Sbjct: 236 EYVEFLGQKIDLTPIRGLLTSVQDTATSVARTISSQPPLKFSLPGDSAQSWLLTTYLDKD 295

Query: 358 FRISRGDGG-LFVLVKEGSPLLD 379
            RISRGDGG +FVL+KEGSPLL+
Sbjct: 296 IRISRGDGGSVFVLIKEGSPLLN 318

May stabilize the accumulated carotenoid structures.

Brassica campestris (taxid: 3711)

>sp|O49629|PAP2_ARATH Probable plastid-lipid-associated protein 2, chloroplastic OS=Arabidopsis thaliana GN=PAP2 PE=1 SV=1

 Score =  246 bits (629), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 118/255 (46%), Positives = 175/255 (68%), Gaps = 6/255 (2%)

Query: 126 GTDNGSAASAASVAATPAAKEVEEYDDKLGDLKRCLVDTVYGTELGFRAGSDVRAEVLEL 185
            TD G   SA  +AA  A ++VEE +     LKR LVD++YGT+ G  A S+ RAE+ +L
Sbjct: 60  ATDTGEIGSAL-LAAEEAIEDVEETER----LKRSLVDSLYGTDRGLSASSETRAEIGDL 114

Query: 186 VNQLEALNPTPNPVNAAGVLDGNWVLVYTAFSELLPLLAAGAIPLLKVEKICQKIDTSSL 245
           + QLE+ NPTP P  A  +L+G W+L YT+F  L PLL+ G +PL+KV++I Q ID+ + 
Sbjct: 115 ITQLESKNPTPAPTEALFLLNGKWILAYTSFVNLFPLLSRGIVPLIKVDEISQTIDSDNF 174

Query: 246 TIENSTTLSSPFASFSFSATASFEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQ 305
           T++NS   + P  + S S  A FE+RSP R+Q++F++G +  P +  ++++P  + + GQ
Sbjct: 175 TVQNSVRFAGPLGTNSISTNAKFEIRSPKRVQIKFEQGVIGTPQLTDSIEIPEYVEVLGQ 234

Query: 306 NINLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGDG 365
            I+L+P++  L+ +Q+   S++R +S QPPLK  +P +  QSWLL TYLD+D RISRGDG
Sbjct: 235 KIDLNPIRGLLTSVQDTASSVARTISSQPPLKFSLPADNAQSWLLTTYLDKDIRISRGDG 294

Query: 366 G-LFVLVKEGSPLLD 379
           G +FVL+KEGSPLL+
Sbjct: 295 GSVFVLIKEGSPLLN 309

Arabidopsis thaliana (taxid: 3702)

>sp|O81439|PAP1_ARATH Probable plastid-lipid-associated protein 1, chloroplastic OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1

 Score =  245 bits (626), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 127/307 (41%), Positives = 192/307 (62%), Gaps = 20/307 (6%)

Query: 78  SKTPVTI-TDEWGEKTELEAEEQEP---TRMADSDPPKDEDEWEEKEEEYDGGTDNGSAA 133
           SK+P+ +  +    ++E+      P    R  D D     DEW +       G +   A+
Sbjct: 26  SKSPILLPINSINRRSEIGVSVHRPDFKIRATDID-----DEWGQD------GVERVFAS 74

Query: 134 SAASVAATPAAKEVEEYDDKLGDLKRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALN 193
           S+    A  A + VEE +     LKR L D++YGT+ G    SD RAE+ EL+ QLE+ N
Sbjct: 75  SSTVSVADKAIESVEETER----LKRSLADSLYGTDRGLSVSSDTRAEISELITQLESKN 130

Query: 194 PTPNPVNAAGVLDGNWVLVYTAFSELLPLLAAGAIPLLKVEKICQKIDTSSLTIENSTTL 253
           PTP P  A  +L+G W+L YT+F  L PLL+    PL+KV++I Q ID+ S T++NS   
Sbjct: 131 PTPAPNEALFLLNGKWILAYTSFVGLFPLLSRRIEPLVKVDEISQTIDSDSFTVQNSVRF 190

Query: 254 SSPFASFSFSATASFEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQ 313
           + PF++ SFS  A FE+RSP R+Q++F++G +  P +  ++++P ++ + GQ I+L+P++
Sbjct: 191 AGPFSTTSFSTNAKFEIRSPKRVQIKFEQGVIGTPQLTDSIEIPESVEVLGQKIDLNPIK 250

Query: 314 QTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGDGG-LFVLVK 372
             L+ +Q+   S++R +S QPPLK  +P + TQSWLL TYLD+D RISRGDGG ++VL+K
Sbjct: 251 GLLTSVQDTASSVARTISNQPPLKFSLPSDNTQSWLLTTYLDKDLRISRGDGGSVYVLIK 310

Query: 373 EGSPLLD 379
           EGS LL+
Sbjct: 311 EGSSLLN 317

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K439|PAP2_ORYSJ Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP2 PE=2 SV=1

 Score =  241 bits (614), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 115/228 (50%), Positives = 161/228 (70%), Gaps = 2/228 (0%)

Query: 153 KLGDLKRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALNPTPNPVNAAGVLDGNWVLV 212
           ++ +LK  L + +YGTE G RA S+ RAEV+EL+ QLEA NPTP P  A  +L+G W+L 
Sbjct: 91  EVAELKAKLKEALYGTERGLRASSETRAEVVELITQLEARNPTPAPTEALTLLNGKWILA 150

Query: 213 YTAFSELLPLLAAGAIP-LLKVEKICQKIDTSSLTIENSTTLSSPFASFSFSATASFEVR 271
           YT+FS+L PLL +G++P L+KVE+I Q ID+ + T++N    S P A+ S S  A FEVR
Sbjct: 151 YTSFSQLFPLLGSGSLPQLVKVEEISQTIDSENFTVQNCIKFSGPLATTSVSTNAKFEVR 210

Query: 272 SPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVS 331
           SP R+Q++F EG +  P +  ++ LP    +FGQNI+L+P++   S ++ A  S++R +S
Sbjct: 211 SPKRVQIKFDEGIIGTPQLTDSIVLPEKFELFGQNIDLTPLKGIFSSIENAASSVARTIS 270

Query: 332 GQPPLKVPIPGERTQSWLLITYLDEDFRISRGDG-GLFVLVKEGSPLL 378
           GQPPLK+PI  +  +SWLL TYLD++ RISRGDG  +FVL KEGS LL
Sbjct: 271 GQPPLKIPIRTDNAESWLLTTYLDDELRISRGDGSSIFVLFKEGSTLL 318

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P80471|LIPC_SOLTU Light-induced protein, chloroplastic OS=Solanum tuberosum PE=1 SV=2

 Score =  240 bits (612), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/338 (40%), Positives = 199/338 (58%), Gaps = 29/338 (8%)

Query: 49  NSKKCKTHLALRLRSSSQPDPVPEPDSEPSKTPVTITDEWGEKTEL-------EAEEQEP 101
           N   CKT     L+ +SQ     +P S+ S  P++ T+ +  KTEL       E    +P
Sbjct: 8   NQIPCKT-----LQITSQ---YSKPTSKISTLPISSTN-FPSKTELHRSISVKEFTNPKP 58

Query: 102 TRMADSDPPKDEDEWEEKEEEYDGGTDNGSAASAASVAATPAAKEVEEYDDKLGDLKRCL 161
              A +     EDEW  + E+   G           VA        E  + +L  LK+ L
Sbjct: 59  KFTAQATNYDKEDEWGPEVEQIRPG----------GVAVVEEEPPKEPSEIEL--LKKQL 106

Query: 162 VDTVYGTELGFRAGSDVRAEVLELVNQLEALNPTPNPVNAAGVLDGNWVLVYTAFSELLP 221
            D++YGT  G  A S+ RAE++EL+ QLE+ NP P P  A  +L+G W+L YT+FS L P
Sbjct: 107 ADSLYGTNRGLSASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSFSGLFP 166

Query: 222 LLAAGAIPLLKVEKICQKIDTSSLTIENSTTLSSPFASFSFSATASFEVRSPSRIQVQFK 281
           LL+ G +PL++VE+I Q ID+ S T++NS   + P A+ S S  A FEVRSP R+Q++F+
Sbjct: 167 LLSRGNLPLVRVEEISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRSPKRVQIKFE 226

Query: 282 EGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIP 341
           EG +  P +  ++ LP N+   GQ I+LSP +  ++ +Q+   S+++++S QPP+K PI 
Sbjct: 227 EGIIGTPQLTDSIVLPENVEFLGQKIDLSPFKGLITSVQDTASSVAKSISSQPPIKFPIT 286

Query: 342 GERTQSWLLITYLDEDFRISRGDGG-LFVLVKEGSPLL 378
               QSWLL TYLD++ RISRGD G +FVL+KEGSPLL
Sbjct: 287 NNNAQSWLLTTYLDDELRISRGDAGSVFVLIKEGSPLL 324

Required for normal plant growth. May be both photoprotective and play an ancillary role in photosynthesis. May structurally stabilize thylakoids during osmotic and oxidative stress.

Solanum tuberosum (taxid: 4113)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
225427112	382	PREDICTED: probable plastid-lipid-associ	0.936	0.931	0.580	1e-111
224139006	349	predicted protein [Populus trichocarpa]	0.715	0.779	0.661	1e-107
297742042	273	unnamed protein product [Vitis vinifera]	0.7	0.974	0.710	1e-106
297827033	375	hypothetical protein ARALYDRAFT_902655 [	0.757	0.768	0.653	1e-105
62900702	360	RecName: Full=Plastid lipid-associated p	0.873	0.922	0.576	1e-105
14248552	360	plastid-lipid associated protein PAP3 [B	0.873	0.922	0.576	1e-105
255555879	367	Plastid lipid-associated protein 3, chlo	0.742	0.768	0.681	1e-105
224074334	373	predicted protein [Populus trichocarpa]	0.773	0.788	0.641	1e-104
449462043	363	PREDICTED: plastid lipid-associated prot	0.894	0.936	0.613	1e-104
15227428	376	putative plastid-lipid-associated protei	0.773	0.781	0.635	1e-103

>gi|225427112|ref|XP_002276479.1| PREDICTED: probable plastid-lipid-associated protein 3, chloroplastic-like [Vitis vinifera]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/403 (58%), Positives = 283/403 (70%), Gaps = 47/403 (11%)

Query: 1   MAFVFGLSPTSLFFSSSSKNQNPKPLLFFSAKSKTHSSLSFSKPNNNNNSKKCKTHLALR 60
           MA +   S  SLFF      +NPK L   S  +++  SLSF+K +  N         ++R
Sbjct: 1   MAMLL-TSHASLFF------KNPKTLRLSSIPTQS-PSLSFAKVSTQN-----PLFSSIR 47

Query: 61  LRSSSQPDP----VPEP--------DSEPS-------KTPVTITDEWGEKTELEAEEQEP 101
           L ++S  +P    +  P        DSE S         P  + DEWGEK E E E +  
Sbjct: 48  LYAASPDNPDSSSIKPPSASDGDASDSEASDQDIQHDAAPAGVADEWGEKAEPELEPEPE 107

Query: 102 -----TRMADSDPPKDEDEWEEKEEEYDGGTDNGSAASAASVAATPAAKEVEEYDDKLGD 156
                T+++ +DPP+DEDEW    +  D    +G+        AT AA EV    D++GD
Sbjct: 108 PEDSYTKLSGADPPRDEDEWGGDGDAKDAYIKSGNGI------ATAAAAEV----DEVGD 157

Query: 157 LKRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALNPTPNPVNAAGVLDGNWVLVYTAF 216
           LKRCLVDTVYGT  GF A ++VRAEV+ELVNQLEA+NPTP P  AA +LDGNWVL+YTA 
Sbjct: 158 LKRCLVDTVYGTNFGFEATAEVRAEVVELVNQLEAVNPTPAPTEAAELLDGNWVLLYTAA 217

Query: 217 SELLPLLAAGAIPLLKVEKICQKIDTSSLTIENSTTLSSPFASFSFSATASFEVRSPSRI 276
           SELLPLLAAG+ PLLKV+ ICQ I+TSS TI NSTTLSSPFA+FSFSA+A+FEVRSPSRI
Sbjct: 218 SELLPLLAAGSTPLLKVKSICQSIETSSRTIVNSTTLSSPFATFSFSASATFEVRSPSRI 277

Query: 277 QVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPPL 336
           QVQFKEGTLQPP+IKS+++LP N+++FGQ INLS VQQ L+PLQEAV SISRA+SGQPPL
Sbjct: 278 QVQFKEGTLQPPEIKSSLNLPENVDVFGQKINLSAVQQYLNPLQEAVASISRAISGQPPL 337

Query: 337 KVPIPGERTQSWLLITYLDEDFRISRGDGGLFVLVKEGSPLLD 379
           KVPIPGER+ SWLLITYLD+D RISRGDGGLFVL +EGSPLLD
Sbjct: 338 KVPIPGERSSSWLLITYLDKDIRISRGDGGLFVLAREGSPLLD 380

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139006|ref|XP_002326744.1| predicted protein [Populus trichocarpa] gi|222834066|gb|EEE72543.1| predicted protein [Populus trichocarpa]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/304 (66%), Positives = 235/304 (77%), Gaps = 32/304 (10%)

Query: 76  EPSKTPVTITDEWGEKTELEAEEQEPTRMADSDPPKDEDEWEEKEEEYDGGTDNGSAASA 135
           EP+ TPV+ITDEWGEK E E E     + ADSDP +++DEW E+ +              
Sbjct: 77  EPNPTPVSITDEWGEKAEPEPEYP---KDADSDPTRNDDEWGEQFK-------------- 119

Query: 136 ASVAATPAAKEVEEYDDKLGDLKRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALNPT 195
                          D ++ DLKRCLVDTVYGTE GFRA  ++RAEVLELVNQLEA+NPT
Sbjct: 120 ---------------DGRIEDLKRCLVDTVYGTEFGFRATPEIRAEVLELVNQLEAVNPT 164

Query: 196 PNPVNAAGVLDGNWVLVYTAFSELLPLLAAGAIPLLKVEKICQKIDTSSLTIENSTTLSS 255
             PV+A GVLDG WVLVYTAFSELLPLLAAGA PLLKV+ I Q ID+S+L+I NSTTLSS
Sbjct: 165 SAPVDATGVLDGKWVLVYTAFSELLPLLAAGATPLLKVKSISQTIDSSNLSIVNSTTLSS 224

Query: 256 PFASFSFSATASFEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQT 315
           PFA+FSFSA+A+FEVR+PSRIQV+FKEGTLQPP+I S +DLP N+ +FGQ INLSPVQQ+
Sbjct: 225 PFATFSFSASATFEVRTPSRIQVEFKEGTLQPPEINSNIDLPENVELFGQKINLSPVQQS 284

Query: 316 LSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGDGGLFVLVKEGS 375
           L+PLQEA  +I R +SGQPPLKVPIPG++  SWLLITYLDED RISRGDGGLFVL KEGS
Sbjct: 285 LNPLQEAAANIGRTISGQPPLKVPIPGKQASSWLLITYLDEDLRISRGDGGLFVLAKEGS 344

Query: 376 PLLD 379
           PLL+
Sbjct: 345 PLLE 348

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742042|emb|CBI33829.3| unnamed protein product [Vitis vinifera]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/276 (71%), Positives = 229/276 (82%), Gaps = 10/276 (3%)

Query: 104 MADSDPPKDEDEWEEKEEEYDGGTDNGSAASAASVAATPAAKEVEEYDDKLGDLKRCLVD 163
           ++ +DPP+DEDEW    +  D    +G+        AT AA EV    D++GDLKRCLVD
Sbjct: 6   LSGADPPRDEDEWGGDGDAKDAYIKSGNGI------ATAAAAEV----DEVGDLKRCLVD 55

Query: 164 TVYGTELGFRAGSDVRAEVLELVNQLEALNPTPNPVNAAGVLDGNWVLVYTAFSELLPLL 223
           TVYGT  GF A ++VRAEV+ELVNQLEA+NPTP P  AA +LDGNWVL+YTA SELLPLL
Sbjct: 56  TVYGTNFGFEATAEVRAEVVELVNQLEAVNPTPAPTEAAELLDGNWVLLYTAASELLPLL 115

Query: 224 AAGAIPLLKVEKICQKIDTSSLTIENSTTLSSPFASFSFSATASFEVRSPSRIQVQFKEG 283
           AAG+ PLLKV+ ICQ I+TSS TI NSTTLSSPFA+FSFSA+A+FEVRSPSRIQVQFKEG
Sbjct: 116 AAGSTPLLKVKSICQSIETSSRTIVNSTTLSSPFATFSFSASATFEVRSPSRIQVQFKEG 175

Query: 284 TLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPGE 343
           TLQPP+IKS+++LP N+++FGQ INLS VQQ L+PLQEAV SISRA+SGQPPLKVPIPGE
Sbjct: 176 TLQPPEIKSSLNLPENVDVFGQKINLSAVQQYLNPLQEAVASISRAISGQPPLKVPIPGE 235

Query: 344 RTQSWLLITYLDEDFRISRGDGGLFVLVKEGSPLLD 379
           R+ SWLLITYLD+D RISRGDGGLFVL +EGSPLLD
Sbjct: 236 RSSSWLLITYLDKDIRISRGDGGLFVLAREGSPLLD 271

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827033|ref|XP_002881399.1| hypothetical protein ARALYDRAFT_902655 [Arabidopsis lyrata subsp. lyrata] gi|297327238|gb|EFH57658.1| hypothetical protein ARALYDRAFT_902655 [Arabidopsis lyrata subsp. lyrata]

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/312 (65%), Positives = 242/312 (77%), Gaps = 24/312 (7%)

Query: 72  EPDSEPSKTPVTIT-DEWGEKTELEAEEQEPTRMADSDPPKDEDEWEE---KEEEYDGGT 127
           EP S+P  + V +T DEWGEK+  E EE   +R A+SDPP++EDEWEE   KE E D G 
Sbjct: 83  EPQSQPDISLVNVTTDEWGEKSGPEPEESG-SRFAESDPPRNEDEWEEEIGKEVEIDAG- 140

Query: 128 DNGSAASAASVAATPAAKEVEEYDDKLGDLKRCLVDTVYGTELGFRAGSDVRAEVLELVN 187
            NGSA S                 DK  +LKRCL DTVYGTELGFRAGSDVRAEVLELVN
Sbjct: 141 -NGSAVS-----------------DKTWELKRCLADTVYGTELGFRAGSDVRAEVLELVN 182

Query: 188 QLEALNPTPNPVNAAGVLDGNWVLVYTAFSELLPLLAAGAIPLLKVEKICQKIDTSSLTI 247
           QLEALNPTP P+    +LDGNWVL+YTAFSEL+PLLAAG+ PLLKV+ I Q IDT +LTI
Sbjct: 183 QLEALNPTPAPIENPELLDGNWVLLYTAFSELVPLLAAGSTPLLKVKSISQSIDTKNLTI 242

Query: 248 ENSTTLSSPFASFSFSATASFEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNI 307
           +NSTTLSSPFA FSFSA+ASFEVRSPSRI+V FKEGTL+PP+IKS+VDLP ++ +FGQ I
Sbjct: 243 DNSTTLSSPFADFSFSASASFEVRSPSRIEVSFKEGTLKPPEIKSSVDLPESVGVFGQQI 302

Query: 308 NLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGDGGL 367
           +L+ ++Q+L+PLQ+   +ISR +SGQPPLK+P PG R  SWLL TYLD+D RISRGDGGL
Sbjct: 303 SLALLKQSLNPLQDVAANISRGLSGQPPLKLPFPGNRGSSWLLTTYLDKDLRISRGDGGL 362

Query: 368 FVLVKEGSPLLD 379
           FVL +EGS LL+
Sbjct: 363 FVLAREGSSLLE 374

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62900702|sp|Q94KU5.1|PAP3_BRACM RecName: Full=Plastid lipid-associated protein 3, chloroplastic; Flags: Precursor gi|14248558|gb|AAK57566.1|AF290568_1 plastid-lipid associated protein PAP3 [Brassica rapa subsp. campestris]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/373 (57%), Positives = 263/373 (70%), Gaps = 41/373 (10%)

Query: 7   LSPTSLFFSSSSKNQNPKPLLFFSAKSKTHSSLSFSKPNNNNNSKKCKTHLALRLRSSSQ 66
           L P +L FS +  ++ P+PL F    SK  SSL    P+ +++  +    +        Q
Sbjct: 28  LKPNALSFSLT-HHRPPRPLRF----SKIRSSL----PSESDSEPEGGYSITDEW--GEQ 76

Query: 67  PDPVPEPDSEPSKTPVTITDEWGEKTELEAEEQEPTRMADSDPPKDEDEWEEKEEEYDGG 126
           P    EP+S P   P  ++DEWGEK+E    E+  TR A+SDPP +EDEWEE+E      
Sbjct: 77  PA---EPESPPDNAPSAVSDEWGEKSE-SVPEESVTRFAESDPPTNEDEWEERE------ 126

Query: 127 TDNGSAASAASVAATPAAKEVEEYDDKLGDLKRCLVDTVYGTELGFRAGSDVRAEVLELV 186
            D+G                     DK  +LKRCL DTVYGTELGFRAGS+VRAEVLE+V
Sbjct: 127 ADDGV--------------------DKTWELKRCLADTVYGTELGFRAGSEVRAEVLEIV 166

Query: 187 NQLEALNPTPNPVNAAGVLDGNWVLVYTAFSELLPLLAAGAIPLLKVEKICQKIDTSSLT 246
           NQLEALNPT  PV    +LDGNWVL+YTAFSELLPLLAAG+ PLLKV+ I Q IDT SL+
Sbjct: 167 NQLEALNPTQAPVENPELLDGNWVLLYTAFSELLPLLAAGSTPLLKVKSISQSIDTKSLS 226

Query: 247 IENSTTLSSPFASFSFSATASFEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQN 306
           I+NSTTLSSPFA FSFSATASFEVR+PSRI+V FKEGTL+PP+IKS+VDLP ++ +FGQ 
Sbjct: 227 IDNSTTLSSPFADFSFSATASFEVRTPSRIEVSFKEGTLKPPEIKSSVDLPESVGVFGQE 286

Query: 307 INLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGDGG 366
           INLS ++Q+L+PLQ+   +ISRA+SGQPPLK+P PG R  SWLL TYLD+D RISRGDGG
Sbjct: 287 INLSFLKQSLNPLQDVAANISRAISGQPPLKLPFPGNRGSSWLLTTYLDKDLRISRGDGG 346

Query: 367 LFVLVKEGSPLLD 379
           LFVL +EGS LL+
Sbjct: 347 LFVLAREGSSLLE 359

Source: Brassica rapa subsp. campestris

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14248552|gb|AAK57563.1| plastid-lipid associated protein PAP3 [Brassica rapa subsp. campestris]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/373 (57%), Positives = 263/373 (70%), Gaps = 41/373 (10%)

Query: 7   LSPTSLFFSSSSKNQNPKPLLFFSAKSKTHSSLSFSKPNNNNNSKKCKTHLALRLRSSSQ 66
           L P +L FS +  ++ P+PL F    SK  SSL    P+ +++  +    +        Q
Sbjct: 28  LKPNALSFSLT-HHRPPRPLRF----SKIRSSL----PSESDSEPEGGYSVTDEW--GEQ 76

Query: 67  PDPVPEPDSEPSKTPVTITDEWGEKTELEAEEQEPTRMADSDPPKDEDEWEEKEEEYDGG 126
           P    EP+S P   P  ++DEWGEK+E    E+  TR A+SDPP +EDEWEE+E      
Sbjct: 77  PA---EPESPPDNAPSAVSDEWGEKSE-SVPEESVTRFAESDPPTNEDEWEERE------ 126

Query: 127 TDNGSAASAASVAATPAAKEVEEYDDKLGDLKRCLVDTVYGTELGFRAGSDVRAEVLELV 186
            D+G                     DK  +LKRCL DTVYGTELGFRAGS+VRAEVLE+V
Sbjct: 127 ADDGV--------------------DKTWELKRCLADTVYGTELGFRAGSEVRAEVLEIV 166

Query: 187 NQLEALNPTPNPVNAAGVLDGNWVLVYTAFSELLPLLAAGAIPLLKVEKICQKIDTSSLT 246
           NQLEALNPT  PV    +LDGNWVL+YTAFSELLPLLAAG+ PLLKV+ I Q IDT SL+
Sbjct: 167 NQLEALNPTQAPVENPELLDGNWVLLYTAFSELLPLLAAGSTPLLKVKSISQSIDTKSLS 226

Query: 247 IENSTTLSSPFASFSFSATASFEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQN 306
           I+NSTTLSSPFA FSFSATASFEVR+PSRI+V FKEGTL+PP+IKS+VDLP ++ +FGQ 
Sbjct: 227 IDNSTTLSSPFADFSFSATASFEVRTPSRIEVSFKEGTLKPPEIKSSVDLPESVGVFGQE 286

Query: 307 INLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGDGG 366
           INLS ++Q+L+PLQ+   +ISRA+SGQPPLK+P PG R  SWLL TYLD+D RISRGDGG
Sbjct: 287 INLSFLKQSLNPLQDVAANISRAISGQPPLKLPFPGNRGSSWLLTTYLDKDLRISRGDGG 346

Query: 367 LFVLVKEGSPLLD 379
           LFVL +EGS LL+
Sbjct: 347 LFVLAREGSSLLE 359

Source: Brassica rapa subsp. campestris

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555879|ref|XP_002518975.1| Plastid lipid-associated protein 3, chloroplast precursor, putative [Ricinus communis] gi|223541962|gb|EEF43508.1| Plastid lipid-associated protein 3, chloroplast precursor, putative [Ricinus communis]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/298 (68%), Positives = 246/298 (82%), Gaps = 16/298 (5%)

Query: 82  VTITDEWGEKTELEAEEQEPTRMADSDPPKDEDEWEEKEEEYDGGTDNGSAASAASVAAT 141
           +TITDEWGE+ E E + + P +  D DPPKD+DEW     EY+ G  NGSA         
Sbjct: 86  LTITDEWGEQVEPETQPEYP-KGTDEDPPKDDDEWGA---EYESG-GNGSAGGL------ 134

Query: 142 PAAKEVEEYDDKLGDLKRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALNPTPNPVNA 201
                V E DD++ DLKRCLVDTVYGT+ GF+A  ++R EVLELVNQLEALNPTP PV++
Sbjct: 135 -----VVEKDDRIEDLKRCLVDTVYGTKFGFQASPEIRGEVLELVNQLEALNPTPAPVDS 189

Query: 202 AGVLDGNWVLVYTAFSELLPLLAAGAIPLLKVEKICQKIDTSSLTIENSTTLSSPFASFS 261
           + +LDG W+L+YTAFSELLPLLA G++PLLKVEKI Q++DTS+L+I NSTTLSSPFA+FS
Sbjct: 190 SQILDGTWILLYTAFSELLPLLAVGSVPLLKVEKISQEVDTSNLSIVNSTTLSSPFATFS 249

Query: 262 FSATASFEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQE 321
           FSA+ASFEVRS SRIQV+F+EG+LQPP+I S +DLP N+++FGQNINLSP+QQ+L+PLQE
Sbjct: 250 FSASASFEVRSSSRIQVEFREGSLQPPEINSKIDLPVNVDVFGQNINLSPLQQSLNPLQE 309

Query: 322 AVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGDGGLFVLVKEGSPLLD 379
            V +ISR +SGQPPLKVPIPG+R++SWLLITYLDED RISRGDGGLFVLVKEGSPLLD
Sbjct: 310 LVANISRTISGQPPLKVPIPGDRSRSWLLITYLDEDLRISRGDGGLFVLVKEGSPLLD 367

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074334|ref|XP_002304354.1| predicted protein [Populus trichocarpa] gi|222841786|gb|EEE79333.1| predicted protein [Populus trichocarpa]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/304 (64%), Positives = 236/304 (77%), Gaps = 10/304 (3%)

Query: 76  EPSKTPVTITDEWGEKTELEAEEQEPTRMADSDPPKDEDEWEEKEEEYDGGTDNGSAASA 135
           EP+  PV ITDEWGEK E E E + P + AD DPP+++DEW         G +  +  + 
Sbjct: 79  EPNSPPVGITDEWGEKAEPELEPEYP-KAADLDPPRNDDEW---------GGEFVAVENG 128

Query: 136 ASVAATPAAKEVEEYDDKLGDLKRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALNPT 195
            + A + ++  V E D+++ +LKR LVDTVYGT+ GFRA  ++RAE LELVNQLE +NPT
Sbjct: 129 NAAAPSSSSAVVVEKDERVEELKRGLVDTVYGTDFGFRASPEIRAEALELVNQLEVVNPT 188

Query: 196 PNPVNAAGVLDGNWVLVYTAFSELLPLLAAGAIPLLKVEKICQKIDTSSLTIENSTTLSS 255
           P PV+A GVLDG WVLVYTAFSELLPLLAAGA P LKV+ I Q ID SSL+I NSTTLS 
Sbjct: 189 PAPVDATGVLDGKWVLVYTAFSELLPLLAAGATPFLKVKSISQTIDASSLSIVNSTTLSG 248

Query: 256 PFASFSFSATASFEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQT 315
           PFA+FSFSA+A+FE R+PSRIQV+FKEG LQPP I S+V+LP N+++FGQ INLSP+QQ+
Sbjct: 249 PFATFSFSASATFEFRTPSRIQVEFKEGVLQPPQINSSVELPENVDLFGQKINLSPIQQS 308

Query: 316 LSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGDGGLFVLVKEGS 375
           L PLQEA  +I R +SGQPPLKVPIPG R  +WLLITYLDED +ISRGDGGLFVL KEGS
Sbjct: 309 LGPLQEAAANIGRTISGQPPLKVPIPGNRASTWLLITYLDEDLQISRGDGGLFVLAKEGS 368

Query: 376 PLLD 379
           PLL+
Sbjct: 369 PLLE 372

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462043|ref|XP_004148751.1| PREDICTED: plastid lipid-associated protein 3, chloroplastic-like [Cucumis sativus] gi|449517090|ref|XP_004165579.1| PREDICTED: plastid lipid-associated protein 3, chloroplastic-like [Cucumis sativus]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 222/362 (61%), Positives = 267/362 (73%), Gaps = 22/362 (6%)

Query: 22  NPKPLLFFSAKSKTHSSLSFSKPNNNNNSKKCKTHLALRLRSSSQPDPVPEPDSEPSKTP 81
           NPK  LF S    T S  SF   N ++         +LRL SS   DP    + + +  P
Sbjct: 21  NPKFPLFSSLP--TISRPSFLSFNLSHKESGALRFPSLRLTSSLSDDPSTTDEDDTTSRP 78

Query: 82  VTITDEWGEKTELEAEEQEPTRMADSDPPKDEDEWEEKEEEYDGGTDNGSAASAASVAAT 141
             ITDEWGE+TE E +    TR++D DPPK++DEW         G D G+   +      
Sbjct: 79  -KITDEWGEETEPEPDSTL-TRLSDFDPPKEDDEW---------GGDEGNGKPSV----- 122

Query: 142 PAAKEVEEY---DDKLGDLKRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALNPTPNP 198
              ++ EEY    DKL +LKRCLVDTVYGTE GFRAG + RAE+LE+VNQLEA NPTP P
Sbjct: 123 -VEEKSEEYVDNRDKLLELKRCLVDTVYGTEFGFRAGLEERAEILEIVNQLEAANPTPAP 181

Query: 199 VNAAGVLDGNWVLVYTAFSELLPLLAAGAIPLLKVEKICQKIDTSSLTIENSTTLSSPFA 258
           V A+G+LDGNW+LVYTAFSELLPLLA GA+PL+KVEKI Q+ID+++LTI NSTTLSSPF 
Sbjct: 182 VEASGLLDGNWILVYTAFSELLPLLALGALPLVKVEKITQEIDSNTLTIVNSTTLSSPFT 241

Query: 259 SFSFSATASFEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSP 318
           +FSFSA+A+FEVRSPSRIQVQFKEG LQPP+IKS +DLP N++IFGQ +NLSPVQQTL P
Sbjct: 242 TFSFSASAAFEVRSPSRIQVQFKEGILQPPEIKSRLDLPENIDIFGQKVNLSPVQQTLDP 301

Query: 319 LQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGDGGLFVLVKEGSPLL 378
           +Q+ V S+ + +SGQPPLK+PIPG+R +SWLLITYLDED RISRGDGGLFVLVKEGS LL
Sbjct: 302 VQQTVASLFQVISGQPPLKIPIPGDRNKSWLLITYLDEDLRISRGDGGLFVLVKEGSALL 361

Query: 379 DQ 380
           DQ
Sbjct: 362 DQ 363

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15227428|ref|NP_181092.1| putative plastid-lipid-associated protein 3 [Arabidopsis thaliana] gi|62900644|sp|O82291.1|PAP3_ARATH RecName: Full=Probable plastid-lipid-associated protein 3, chloroplastic; Short=AtPap3; AltName: Full=Fibrillin-3; Flags: Precursor gi|3608139|gb|AAC36172.1| putative fibrillin [Arabidopsis thaliana] gi|21593402|gb|AAM65369.1| putative fibrillin [Arabidopsis thaliana] gi|330254019|gb|AEC09113.1| putative plastid-lipid-associated protein 3 [Arabidopsis thaliana]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/318 (63%), Positives = 240/318 (75%), Gaps = 24/318 (7%)

Query: 66  QPDPVPEPDSEPSKTPV-TITDEWGEKTELEAEEQEPTRMADSDPPKDEDEWEEK---EE 121
           +P    EPDS+P    V  ITDEWGEK+  E EE   TR  +SDPP++EDEW  +   E 
Sbjct: 78  KPGDANEPDSQPDNVTVNVITDEWGEKSGPELEESG-TRFMESDPPRNEDEWGGEIGGET 136

Query: 122 EYDGGTDNGSAASAASVAATPAAKEVEEYDDKLGDLKRCLVDTVYGTELGFRAGSDVRAE 181
           E D G  NGSA S                 D   +LKRCL D+VYGTELGF+AGS+VRAE
Sbjct: 137 EADAG--NGSAVS-----------------DPTWELKRCLADSVYGTELGFKAGSEVRAE 177

Query: 182 VLELVNQLEALNPTPNPVNAAGVLDGNWVLVYTAFSELLPLLAAGAIPLLKVEKICQKID 241
           VLELVNQLEALNPTP P+    +LDGNWVL+YTAFSEL+PLLAAG+ PLLKV+ I Q ID
Sbjct: 178 VLELVNQLEALNPTPAPLENPELLDGNWVLLYTAFSELIPLLAAGSTPLLKVKSISQSID 237

Query: 242 TSSLTIENSTTLSSPFASFSFSATASFEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLN 301
           T++L I+NSTTLSSPFA FSFSATASFEVRSPSRI+V FKEGTL+PP IKS+VDLP ++ 
Sbjct: 238 TNNLIIDNSTTLSSPFADFSFSATASFEVRSPSRIEVSFKEGTLKPPVIKSSVDLPESVG 297

Query: 302 IFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRIS 361
           +FGQ I+LS ++Q+L+PLQ+   +ISRA+SGQPPLK+P PG R  SWLL TYLD+D RIS
Sbjct: 298 VFGQQISLSLLKQSLNPLQDVAANISRALSGQPPLKLPFPGNRGSSWLLTTYLDKDLRIS 357

Query: 362 RGDGGLFVLVKEGSPLLD 379
           RGDGGLFVL +EGS LL+
Sbjct: 358 RGDGGLFVLAREGSSLLE 375

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
TAIR|locus:2062497	376	AT2G35490 [Arabidopsis thalian	0.6	0.606	0.600	2.5e-73
TAIR|locus:2136627	318	FIB "fibrillin" [Arabidopsis t	0.665	0.795	0.384	3.2e-49
TAIR|locus:2132006	310	AT4G22240 [Arabidopsis thalian	0.586	0.719	0.419	3.2e-49
UNIPROTKB|P80471	326	P80471 "Light-induced protein,	0.584	0.680	0.426	3.7e-48
UNIPROTKB|O99019	326	O99019 "Light-induced protein,	0.584	0.680	0.417	5.4e-47
TAIR|locus:2092165	234	AT3G26080 [Arabidopsis thalian	0.163	0.264	0.333	3.9e-07
TAIR|locus:2092150	242	AT3G26070 [Arabidopsis thalian	0.163	0.256	0.317	4.6e-07
TAIR|locus:2178133	273	AT5G09820 [Arabidopsis thalian	0.192	0.267	0.310	4.8e-05

TAIR|locus:2062497 AT2G35490 [Arabidopsis thaliana (taxid:3702)]

 Score = 698 (250.8 bits), Expect = 2.5e-73, Sum P(2) = 2.5e-73
 Identities = 137/228 (60%), Positives = 166/228 (72%)

Query:   152 DKLGDLKRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALNPTPNPVNAAGVLDGNWVL 211
             D   +LKRCL D+VYGTELGF+AGS+VRAEVLELVNQLEALNPTP P+    +LDGNWVL
Sbjct:   148 DPTWELKRCLADSVYGTELGFKAGSEVRAEVLELVNQLEALNPTPAPLENPELLDGNWVL 207

Query:   212 VYTAFSEXXXXXXXXXXXXXKVEKICQKIDTSSLTIENXXXXXXXXXXXXXXXXXXXEVR 271
             +YTAFSE             KV+ I Q IDT++L I+N                   EVR
Sbjct:   208 LYTAFSELIPLLAAGSTPLLKVKSISQSIDTNNLIIDNSTTLSSPFADFSFSATASFEVR 267

Query:   272 SPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVS 331
             SPSRI+V FKEGTL+PP IKS+VDLP ++ +FGQ I+LS ++Q+L+PLQ+   +ISRA+S
Sbjct:   268 SPSRIEVSFKEGTLKPPVIKSSVDLPESVGVFGQQISLSLLKQSLNPLQDVAANISRALS 327

Query:   332 GQPPLKVPIPGERTQSWLLITYLDEDFRISRGDGGLFVLVKEGSPLLD 379
             GQPPLK+P PG R  SWLL TYLD+D RISRGDGGLFVL +EGS LL+
Sbjct:   328 GQPPLKLPFPGNRGSSWLLTTYLDKDLRISRGDGGLFVLAREGSSLLE 375

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2136627 FIB "fibrillin" [Arabidopsis thaliana (taxid:3702)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 98/255 (38%), Positives = 148/255 (58%)

Query:   126 GTDNGXXXXXXXXXXXXXXKEVEEYDDKLGDLKRCLVDTVYGTELGFRAGSDVRAEVLEL 185
             G D                K +E  ++    LKR L D++YGT+ G    SD RAE+ EL
Sbjct:    64 GQDGVERVFASSSTVSVADKAIESVEET-ERLKRSLADSLYGTDRGLSVSSDTRAEISEL 122

Query:   186 VNQLEALNPTPNPVNAAGVLDGNWVLVYTAFSEXXXXXXXXXXXXXKVEKICQKIDTSSL 245
             + QLE+ NPTP P  A  +L+G W+L YT+F               KV++I Q ID+ S 
Sbjct:   123 ITQLESKNPTPAPNEALFLLNGKWILAYTSFVGLFPLLSRRIEPLVKVDEISQTIDSDSF 182

Query:   246 TIENXXXXXXXXXXXXXXXXXXXEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQ 305
             T++N                   E+RSP R+Q++F++G +  P +  ++++P ++ + GQ
Sbjct:   183 TVQNSVRFAGPFSTTSFSTNAKFEIRSPKRVQIKFEQGVIGTPQLTDSIEIPESVEVLGQ 242

Query:   306 NINLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGDG 365
              I+L+P++  L+ +Q+   S++R +S QPPLK  +P + TQSWLL TYLD+D RISRGDG
Sbjct:   243 KIDLNPIKGLLTSVQDTASSVARTISNQPPLKFSLPSDNTQSWLLTTYLDKDLRISRGDG 302

Query:   366 G-LFVLVKEGSPLLD 379
             G ++VL+KEGS LL+
Sbjct:   303 GSVYVLIKEGSSLLN 317

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010205 "photoinhibition" evidence=IMP

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2132006 AT4G22240 [Arabidopsis thaliana (taxid:3702)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 94/224 (41%), Positives = 142/224 (63%)

Query:   157 LKRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALNPTPNPVNAAGVLDGNWVLVYTAF 216
             LKR LVD++YGT+ G  A S+ RAE+ +L+ QLE+ NPTP P  A  +L+G W+L YT+F
Sbjct:    86 LKRSLVDSLYGTDRGLSASSETRAEIGDLITQLESKNPTPAPTEALFLLNGKWILAYTSF 145

Query:   217 SEXXXXXXXXXXXXXKVEKICQKIDTSSLTIENXXXXXXXXXXXXXXXXXXXEVRSPSRI 276
                            KV++I Q ID+ + T++N                   E+RSP R+
Sbjct:   146 VNLFPLLSRGIVPLIKVDEISQTIDSDNFTVQNSVRFAGPLGTNSISTNAKFEIRSPKRV 205

Query:   277 QVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPPL 336
             Q++F++G +  P +  ++++P  + + GQ I+L+P++  L+ +Q+   S++R +S QPPL
Sbjct:   206 QIKFEQGVIGTPQLTDSIEIPEYVEVLGQKIDLNPIRGLLTSVQDTASSVARTISSQPPL 265

Query:   337 KVPIPGERTQSWLLITYLDEDFRISRGDGG-LFVLVKEGSPLLD 379
             K  +P +  QSWLL TYLD+D RISRGDGG +FVL+KEGSPLL+
Sbjct:   266 KFSLPADNAQSWLLTTYLDKDIRISRGDGGSVFVLIKEGSPLLN 309

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

UNIPROTKB|P80471 P80471 "Light-induced protein, chloroplastic" [Solanum tuberosum (taxid:4113)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 95/223 (42%), Positives = 137/223 (61%)

Query:   157 LKRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALNPTPNPVNAAGVLDGNWVLVYTAF 216
             LK+ L D++YGT  G  A S+ RAE++EL+ QLE+ NP P P  A  +L+G W+L YT+F
Sbjct:   102 LKKQLADSLYGTNRGLSASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSF 161

Query:   217 SEXXXXXXXXXXXXXKVEKICQKIDTSSLTIENXXXXXXXXXXXXXXXXXXXEVRSPSRI 276
             S              +VE+I Q ID+ S T++N                   EVRSP R+
Sbjct:   162 SGLFPLLSRGNLPLVRVEEISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRSPKRV 221

Query:   277 QVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPPL 336
             Q++F+EG +  P +  ++ LP N+   GQ I+LSP +  ++ +Q+   S+++++S QPP+
Sbjct:   222 QIKFEEGIIGTPQLTDSIVLPENVEFLGQKIDLSPFKGLITSVQDTASSVAKSISSQPPI 281

Query:   337 KVPIPGERTQSWLLITYLDEDFRISRGDGG-LFVLVKEGSPLL 378
             K PI     QSWLL TYLD++ RISRGD G +FVL+KEGSPLL
Sbjct:   282 KFPITNNNAQSWLLTTYLDDELRISRGDAGSVFVLIKEGSPLL 324

GO:0003674 "molecular_function" evidence=ND

GO:0006950 "response to stress" evidence=IEP

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

UNIPROTKB|O99019 O99019 "Light-induced protein, chloroplastic" [Solanum demissum (taxid:50514)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 93/223 (41%), Positives = 135/223 (60%)

Query:   157 LKRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALNPTPNPVNAAGVLDGNWVLVYTAF 216
             LK+ L D++YGT  G  A S+ RAE++EL+ QLE+ NP P P  A  +L+G W+L YT+F
Sbjct:   102 LKKQLADSLYGTNRGLSASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSF 161

Query:   217 SEXXXXXXXXXXXXXKVEKICQKIDTSSLTIENXXXXXXXXXXXXXXXXXXXEVRSPSRI 276
             S              +VE+I Q ID+ S T++N                   EVRSP R+
Sbjct:   162 SGLFPLLSRGNLPLVRVEEISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRSPKRV 221

Query:   277 QVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPPL 336
             Q++F+EG +  P +  ++ LP N+   GQ I++SP +  ++ +Q+   S+ +++S QPP+
Sbjct:   222 QIKFEEGIIGTPQLTDSIVLPENVEFLGQKIDVSPFKGLITSVQDTASSVVKSISSQPPI 281

Query:   337 KVPIPGERTQSWLLITYLDEDFRISRGDGG-LFVLVKEGSPLL 378
             K PI     QSWLL TYLD++ RI RGD G +FVL+KEGSPLL
Sbjct:   282 KFPITNNNAQSWLLTTYLDDELRIPRGDAGSVFVLIKEGSPLL 324

GO:0003674 "molecular_function" evidence=ND

GO:0006950 "response to stress" evidence=IEP

GO:0009535 "chloroplast thylakoid membrane" evidence=ISS

TAIR|locus:2092165 AT3G26080 [Arabidopsis thaliana (taxid:3702)]

 Score = 96 (38.9 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
 Identities = 21/63 (33%), Positives = 36/63 (57%)

Query:   152 DKLGDLKRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALNPTPNPVNAAGVLDGNWVL 211
             +K   LK  LV+ +   E G  A  D +  + +L  ++EA+NPT  P+ +  +++G W L
Sbjct:    60 EKRKQLKHELVEAIEPLERGATASPDDQLLIDQLARKVEAVNPTKEPLKS-DLINGKWEL 118

Query:   212 VYT 214
             +YT
Sbjct:   119 IYT 121

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

TAIR|locus:2092150 AT3G26070 [Arabidopsis thaliana (taxid:3702)]

 Score = 96 (38.9 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query:   152 DKLGDLKRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALNPTPNPVNAAGVLDGNWVL 211
             +K   LK+ L++ +   E G  A  D +  + +L  ++EA+NPT  P+ +  +++G W L
Sbjct:    69 EKQKQLKQELLEAIEPLERGATASPDDQLRIDQLARKVEAVNPTKEPLKS-DLVNGKWEL 127

Query:   212 VYT 214
             +YT
Sbjct:   128 IYT 130

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2178133 AT5G09820 [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
 Identities = 23/74 (31%), Positives = 36/74 (48%)

Query:   145 KEVEEYDDKLGDLKRCLVDTVYGTELG-FRAGSDVRAEVLELVNQLEALNPTPNPVNAAG 203
             +E E+ +  +  +K  L + + G   G F   SD + E+  LV  LE  NPTP P     
Sbjct:    74 QEQEQEEITVSHIKEELYEALKGINRGIFGVKSDKKTEIEGLVKLLECRNPTPEPTGELD 133

Query:   204 VLDGNWVLVYTAFS 217
              + G W L+Y+  +
Sbjct:   134 KIGGCWKLIYSTIT 147

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O82291	PAP3_ARATH	No assigned EC number	0.6352	0.7736	0.7819	yes	no
Q94KU5	PAP3_BRACM	No assigned EC number	0.5764	0.8736	0.9222	N/A	no
Q7XBW5	PAP3_ORYSJ	No assigned EC number	0.5903	0.7605	0.7727	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	380
pfam04755	196	pfam04755, PAP_fibrillin, PAP_fibrillin	4e-73

>gnl|CDD|218245 pfam04755, PAP_fibrillin, PAP_fibrillin

 Score =  225 bits (576), Expect = 4e-73
 Identities = 105/217 (48%), Positives = 132/217 (60%), Gaps = 23/217 (10%)

Query: 156 DLKRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALNPTPNPVNAAGVLDGNWVLVYTA 215
            LKR L+D +YGT  G RA SD RAE+   V QLEALNPTP P  +  +L+G W L+YT 
Sbjct: 2   RLKRKLLDAIYGTNRGLRASSDDRAEIESAVTQLEALNPTPAPTESLDLLNGKWRLLYTT 61

Query: 216 FSELLPLLAAGAIPLLKVEKICQKIDTSSLTIENSTTLSSPFASFSFSATASFEVRSPSR 275
             ELLPLLA G +PLLKV +I Q ID ++LT+ NS T S P A  SFS  A FE+RSP R
Sbjct: 62  SKELLPLLARGRLPLLKVGQIYQTIDVNNLTVYNSVTFSGPLAEGSFSVRAKFEIRSPKR 121

Query: 276 IQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPP 335
           +Q++F+ G L                          ++ +L+PLQ+   +I R +S Q P
Sbjct: 122 VQIRFERGVLGT---------------------PQLLKGSLTPLQDTASNI-RGISSQLP 159

Query: 336 LKVPIPGERTQSWLLITYLDEDFRISRGDGG-LFVLV 371
           L  P+ G+R + WL  TYLDED RISRGDGG LFVL 
Sbjct: 160 LPFPLSGDRAKGWLETTYLDEDLRISRGDGGSLFVLA 196

This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins. Length = 196

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	380
PF04755	198	PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843	100.0

>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle

Probab=100.00  E-value=1.3e-43  Score=322.71  Aligned_cols=196  Identities=45%  Similarity=0.794  Sum_probs=170.2

Q ss_pred             HHHHHHHHHHHhcCCCCccCChhhHHHHHHHHHHHHHhCCCCCCCCcccCCcceEEEEEeccccchhhhhcCCCCcceec
Q 016943          155 GDLKRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALNPTPNPVNAAGVLDGNWVLVYTAFSELLPLLAAGAIPLLKVE  234 (380)
Q Consensus       155 ~~lK~~LL~aiagT~RG~~As~e~R~eVeeLI~qLEalNPtp~Pt~sp~lL~G~W~LvYTSs~~~~plLa~GrlPfv~vG  234 (380)
                      +++|++||+++++++||+.+++++|++|+++|++||++||++.|+++.++|+|+|+|+|||+.++.+.+..++.+++.++
T Consensus         1 ~~~K~~Ll~~~~~~~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~~~~~~~   80 (198)
T PF04755_consen    1 QDLKQELLQAVAGTNRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRLPGVRVG   80 (198)
T ss_pred             ChHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCcccccccccccccccc
Confidence            36999999999999999999999999999999999999999999987679999999999999998866666777888999


Q ss_pred             ceEEEEeCCCCeEEEEEEecC-CCcceEEEEEEEEEEcCCCeEEEEEeeeeecCCCCCcccCCCCccccccccccCcccc
Q 016943          235 KICQKIDTSSLTIENSTTLSS-PFASFSFSATASFEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQ  313 (380)
Q Consensus       235 ~I~Q~ID~~~~~v~N~Vefs~-P~l~~sv~v~Asfev~s~~Rv~V~Fe~~~l~pp~i~~~~~lP~~v~ifGq~I~l~~l~  313 (380)
                      ++||+||.+++++.|+|+|.. |++.+.+.+.+++++.+++|+.|+|+++.+.++.+                     +.
T Consensus        81 ~v~Q~id~~~~~~~N~v~~~~~~~~~~~~~v~a~~~~~~~~rv~v~f~~~~l~~~~~---------------------l~  139 (198)
T PF04755_consen   81 RVFQTIDADNGRVENVVELSGFPLLEGSVSVRASLEVRSPRRVEVTFERASLKPPSL---------------------LK  139 (198)
T ss_pred             ceEEEEECCCceEEEEEEEeccCceEEEEEEEEEEEEccccEEEEEEEeeEEcccce---------------------ee
Confidence            999999999999999999984 77788999999999999999999999999987653                     12


Q ss_pred             cccchhhhhhhhhhccccCCCCccccCCCCCCceEEEEEEecCCeeEEeCCCc-eEEEE
Q 016943          314 QTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGDGG-LFVLV  371 (380)
Q Consensus       314 ~~l~P~~~~~~~i~r~isg~pPlk~Plpg~~~~GwLdtTYLDedLRIsRGdgG-vFVl~  371 (380)
                      +.+.+++.....+.+.+....|+++++++..++|||+||||||||||+||++| +|||.
T Consensus       140 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~l~~tYLDedlRI~Rg~~G~~fVl~  198 (198)
T PF04755_consen  140 GVLGPLKDALNNVPRGISDELPVPLPLPGGSPKGWLDTTYLDEDLRISRGNKGSLFVLK  198 (198)
T ss_pred             ccchhhhhhhhhcccccccccccccccCCCCCceEEEEEEECCCeEEEEcCCCCEEEeC
Confidence            22334444445555555566778888887788999999999999999999999 99984

The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	380
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 17/93 (18%)

Query: 65  SQPDPVPEPDSEPSKTPVTITDEWGEKTELEAEEQEPTRMADSDPPKDEDEWEEK-EEEY 123
           +Q D + + + E  +       +W E+     +E       D+     E EW EK +++ 
Sbjct: 75  AQADRLTQ-EPESIR-------KWREEQRKRLQEL------DAASKVMEQEWREKAKKDL 120

Query: 124 DGGTDNGSAASAASVAATPAAKE--VEEYDDKL 154
           +      S     +      A +   ++ D  +
Sbjct: 121 EEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 28/209 (13%), Positives = 59/209 (28%), Gaps = 74/209 (35%)

Query: 146 EVEEYDDKLGDL------KRCLV--DTVYGTEL--GFRAGSDVRAEVL------ELVNQL 189
            +     +L  L      + CL+    V   +    F    ++  ++L      ++ + L
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----NLSCKILLTTRFKQVTDFL 281

Query: 190 EALNPTPNPVN----------AAGVLDGNWVLVYTAFSELLPLLAAGAIPLLKVEKICQK 239
            A   T   ++             +L   ++       +L P       P   +  I + 
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLL-LKYLDC--RPQDL-PREVLTTNPRR-LSIIAES 336

Query: 240 IDTSSLTIEN---------STTLSSPFASFSFSATASFEVRSPSRIQVQFKEGTLQPPDI 290
           I     T +N         +T + S           S  V  P+  +  F          
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIES-----------SLNVLEPAEYRKMFDR-------- 377

Query: 291 KSTVDLPGNLNIFGQNINLSPVQQTLSPL 319
                    L++F  + ++      LS +
Sbjct: 378 ---------LSVFPPSAHIPT--ILLSLI 395

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00