Citrus Sinensis ID: 016945

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380
Protein Sequence
MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPFSRKCVSLFILSNSFWNLWACLLVFVI
Secondary Structure (PSIPRED)
cHHHHHcHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccEEEEEEEEcccEEEEEEcccccccccccEEEccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccEEEEEEEcccccEEEccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHcccccccccccccccccEEEccccccccccccccccccHHHHHccccccccccccccEEEEEcccEEEEEcccccccccccccEEEEEEEEccHEEEEEEEccccEccccccEEEEEccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccEEEccccEEEEEccHHHHcccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccHHHHHHHHHHHccccHHHcEEEEEc
Coil and Loop (DISEMBL)
MAYYRRAKAALDAFRNlsskavpkspvqescsrvysngsansakfssgfysySCISQrlrnsycnpnfntakryyyvdryhvqhfrprgprkwlqnprTVFIVVVIGSGAFITLYLgnletvpytkrTHFVLLSKAVERQLGESQFQQMKAAFKgkilpaihpdsVRVRLIAKDIIEALQRGLkhetvwsdmgyastetdfvnegRAARDTLRALSensergktegkwhqedeilddkWVQQSRKKGQEKGLQSAtshldglnweVLVVNEpvinafclpggkivVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFlrlpfsrkCVSLFILSNSFWNLWACLLVFVI
Flexible Loop (DISEMBL)
MAYYRRAKAAldafrnlsskavpkspvqesCSRVYSNgsansakfsSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFrprgprkwlqnpRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRglkhetvwsdmgyastetdfvnegRAARDTLRalsensergktegkwhqedeilddKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPFSRKCVSLFILSNSFWNLWACLLVFVI
Low Complexity Region (SEG)
MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGhevahavarhaaeGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPFSRKCVSLFILSNSFWNLWACLLVFVI
Disordered region (IsUnstruct)
********************************************FSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFV*******************************************************HLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPFSRKCVSLFILSNSFWNLWACLLVFV*
Disordered Region (DISOPRED)
********AA*************************************************************KRYYYV***************WLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFV**************************************QQSRKKGQEKGLQS*TSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPFSRKCVSLFILSNSFWNLWACLLVFVI
Disordered Region (DISEMBL)
MAYYRRAKAALDAFRNLSS***************YSNGSANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRAL**************QEDEILDDKWVQ**************TSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPFSRKCVSLFILSNSFWNLWACLLVFVI
Disordered Region (DISPRO)
*AYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPFSRKCVSLFILSNSFWNLWACLLVFVI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPFSRKCVSLFILSNSFWNLWACLLVFVI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	380	2.2.26 [Sep-21-2011]
P36163	345	Mitochondrial metalloendo	yes	no	0.268	0.295	0.428	3e-17
Q9P7G4	337	Mitochondrial metalloendo	yes	no	0.265	0.299	0.383	8e-13
Q96E52	524	Metalloendopeptidase OMA1	yes	no	0.115	0.083	0.466	5e-10
Q3SZN3	523	Metalloendopeptidase OMA1	yes	no	0.107	0.078	0.508	5e-10
Q9D8H7	521	Metalloendopeptidase OMA1	yes	no	0.105	0.076	0.5	8e-10
D3ZS74	504	Metalloendopeptidase OMA1	yes	no	0.15	0.113	0.508	9e-10
E9QBI7	478	Metalloendopeptidase OMA1	yes	no	0.163	0.129	0.451	5e-09
Q8ZCC3	486	TPR repeat-containing pro	yes	no	0.189	0.148	0.294	3e-05
P66950	487	TPR repeat-containing pro	yes	no	0.284	0.221	0.254	7e-05
P66951	487	TPR repeat-containing pro	N/A	no	0.284	0.221	0.254	7e-05

>sp|P36163|OMA1_YEAST Mitochondrial metalloendopeptidase OMA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OMA1 PE=1 SV=2

 Score = 89.7 bits (221), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 65/105 (61%), Gaps = 3/105 (2%)

Query: 256 TSHLDGLNWEVLVVNEPVI--NAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVA 313
            S LDG+ WE+ VVN+P    NAF LPGGK+ +F+ +L     D  IAT++ HE AH +A
Sbjct: 151 NSLLDGIKWEIHVVNDPTASPNAFVLPGGKVFIFSSILPICANDDGIATVLAHEFAHQLA 210

Query: 314 RHAAEGITKNLWFAILQLILYQFVMPDVVNT-MSTLFLRLPFSRK 357
           RH AE ++K   +++L L+LY       +N  +   FLR+P SR+
Sbjct: 211 RHTAENLSKAPIYSLLGLVLYTVTGAHAINNILLDGFLRMPASRQ 255

Protease that is part of the quality control system in the inner membrane of mitochondria. Cleaves and thereby promotes the turnover of mistranslated or misfolded membrane proteins. Can cleave the misfolded multi-pass membrane protein OXA1.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -

>sp|Q9P7G4|OMA1_SCHPO Mitochondrial metalloendopeptidase OMA1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=oma1 PE=3 SV=1

 Score = 75.1 bits (183), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 58/107 (54%), Gaps = 6/107 (5%)

Query: 255 ATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVAR 314
           A S +  L WE+ V+ +P  NAF LPGGK+ VF G+L   + +  +A ++ HE AH VAR
Sbjct: 144 AVSGMSDLKWELHVIRDPTPNAFVLPGGKVFVFEGILPMCKGEDGLAAVLAHETAHQVAR 203

Query: 315 HAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLR----LPFSRK 357
           H+AE I      A+  ++       D+   +S   L     LPFSRK
Sbjct: 204 HSAEKIAFTR--AVSCIVFLAAASLDLSGQLSHFLLNFGLLLPFSRK 248

Protease that is part of the quality control system in the inner membrane of mitochondria. Cleaves and thereby promotes the turnover of mistranslated or misfolded membrane proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q96E52|OMA1_HUMAN Metalloendopeptidase OMA1, mitochondrial OS=Homo sapiens GN=OMA1 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 41/60 (68%)

Query: 259 LDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAE 318
           +  +NW + VV+ P+INAF LP G++ VFTG L       +++ ++GHE+AHAV  HAAE
Sbjct: 280 ISQINWVIHVVDSPIINAFVLPNGQMFVFTGFLNSVTDIHQLSFLLGHEIAHAVLGHAAE 339

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of OPA1 at S1 position, leading to OPA1 inactivation and negative regulation of mitochondrial fusion. Its role in mitochondrial quality control is essential for regulating lipid metabolism as well as to maintain body temperature and energy expenditure under cold-stress conditions.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q3SZN3|OMA1_BOVIN Metalloendopeptidase OMA1, mitochondrial OS=Bos taurus GN=OMA1 PE=2 SV=2

 Score = 65.9 bits (159), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 40/57 (70%)

Query: 262 LNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAE 318
           +NW + VV+ P INAF LP G++ VFTGLL       +++ ++GHE+AHAV  HAAE
Sbjct: 283 INWIIHVVDSPDINAFVLPNGQVFVFTGLLNSVTDIHQLSFLLGHEIAHAVLEHAAE 339

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of OPA1 at S1 position, leading to OPA1 inactivation and negative regulation of mitochondrial fusion. Its role in mitochondrial quality control is essential for regulating lipid metabolism as well as to maintain body temperature and energy expenditure under cold-stress conditions.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q9D8H7|OMA1_MOUSE Metalloendopeptidase OMA1, mitochondrial OS=Mus musculus GN=Oma1 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 39/56 (69%)

Query: 263 NWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAE 318
           NW V VV+ P +NAF LP G++ +FTGLL       +++ ++GHE+AHAV  HAAE
Sbjct: 280 NWVVHVVDSPAVNAFVLPNGQVFIFTGLLNSVTDVHQLSFLLGHEIAHAVLGHAAE 335

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of OPA1 at S1 position, leading to OPA1 inactivation and negative regulation of mitochondrial fusion. Its role in mitochondrial quality control is essential for regulating lipid metabolism as well as to maintain body temperature and energy expenditure under cold-stress conditions.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|D3ZS74|OMA1_RAT Metalloendopeptidase OMA1, mitochondrial OS=Rattus norvegicus GN=Oma1 PE=3 SV=1

 Score = 65.1 bits (157), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 40/57 (70%)

Query: 262 LNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAE 318
           +NW V VV+ P +NAF LP G++ VFTGLL       +++ ++GHE+AHAV  HAAE
Sbjct: 262 INWVVHVVHSPKVNAFVLPNGQVFVFTGLLNSVTDMHQLSFLLGHEIAHAVLGHAAE 318

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of OPA1 at S1 position, leading to OPA1 inactivation and negative regulation of mitochondrial fusion. Its role in mitochondrial quality control is essential for regulating lipid metabolism as well as to maintain body temperature and energy expenditure under cold-stress conditions.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|E9QBI7|OMA1_DANRE Metalloendopeptidase OMA1, mitochondrial OS=Danio rerio GN=oma1 PE=3 SV=1

 Score = 62.4 bits (150), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 40/62 (64%)

Query: 257 SHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHA 316
           + +  + W V VV+ P +NAF LP G+I VFTG+L       ++  I+GHE+AHA+  HA
Sbjct: 247 AEISAVPWTVHVVDSPTMNAFVLPNGEIFVFTGMLNAVTDIHQLTFILGHEMAHALIGHA 306

Query: 317 AE 318
           AE
Sbjct: 307 AE 308

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of opa1 at S1 position, leading to opa1 inactivation and negative regulation of mitochondrial fusion.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q8ZCC3|Y3069_YERPE TPR repeat-containing protein YPO3069/y1412/YP_2691 OS=Yersinia pestis GN=YPO3069 PE=4 SV=1

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 268 VVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKN---- 323
           +VN   INAF   GG +V+ + L  +   ++E+A+++ HE++H   RH A  + +     
Sbjct: 96  LVNNDQINAFAFFGGNVVLHSALFRYTDNESELASVLAHEISHVTQRHLARAMEEQQRLA 155

Query: 324 --LWFAILQLILYQFVMP 339
              W  +L  IL     P
Sbjct: 156 PLTWVGVLGSILLTMASP 173

Yersinia pestis (taxid: 632)

>sp|P66950|YFGC_SALTY TPR repeat-containing protein YfgC OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yfgC PE=4 SV=1

 Score = 48.9 bits (115), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 10/118 (8%)

Query: 257 SHLDGLN--WEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVAR 314
           SH D +   +   ++N   INAF   GG +V+ + L  +   ++++A+++ HE++H   R
Sbjct: 85  SHADSVKTPFHFFLINNDEINAFAFFGGNVVLHSALFRYADNESQLASVMAHEISHVTQR 144

Query: 315 HAAEGITKN------LWFAILQLILYQFVMPDVVNTMSTLFLRLPFSRKCVSLFILSN 366
           H A  +          W   L  IL     P     M+ L   L  +R+ +  F   N
Sbjct: 145 HLARAMEDQKRSAPLTWVGALGSILLAMASPQA--GMAALTGTLAGTRQGMISFTQQN 200

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

>sp|P66951|YFGC_SALTI TPR repeat-containing protein YfgC OS=Salmonella typhi GN=yfgC PE=4 SV=1

 Score = 48.9 bits (115), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 10/118 (8%)

Query: 257 SHLDGLN--WEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVAR 314
           SH D +   +   ++N   INAF   GG +V+ + L  +   ++++A+++ HE++H   R
Sbjct: 85  SHADSVKTPFHFFLINNDEINAFAFFGGNVVLHSALFRYADNESQLASVMAHEISHVTQR 144

Query: 315 HAAEGITKN------LWFAILQLILYQFVMPDVVNTMSTLFLRLPFSRKCVSLFILSN 366
           H A  +          W   L  IL     P     M+ L   L  +R+ +  F   N
Sbjct: 145 HLARAMEDQKRSAPLTWVGALGSILLAMASPQA--GMAALTGTLAGTRQGMISFTQQN 200

Salmonella typhi (taxid: 90370)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
255539649	482	peptidase, putative [Ricinus communis] g	0.931	0.734	0.686	1e-148
449460776	440	PREDICTED: uncharacterized protein LOC10	0.931	0.804	0.691	1e-141
449499671	440	PREDICTED: uncharacterized LOC101206881	0.931	0.804	0.691	1e-141
356530935	448	PREDICTED: uncharacterized protein LOC10	0.928	0.787	0.663	1e-136
225455604	434	PREDICTED: mitochondrial metalloendopept	0.910	0.797	0.677	1e-135
224122540	382	predicted protein [Populus trichocarpa]	0.776	0.772	0.738	1e-133
10177873	485	unnamed protein product [Arabidopsis tha	0.955	0.748	0.575	1e-124
30696099	442	Peptidase family M48 family protein [Ara	0.955	0.821	0.575	1e-124
297792483	436	peptidase M48 family protein [Arabidopsi	0.963	0.839	0.570	1e-124
356517492	445	PREDICTED: uncharacterized protein LOC10	0.926	0.791	0.581	1e-115

>gi|255539649|ref|XP_002510889.1| peptidase, putative [Ricinus communis] gi|223550004|gb|EEF51491.1| peptidase, putative [Ricinus communis]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 256/373 (68%), Positives = 309/373 (82%), Gaps = 19/373 (5%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPV-QESCSRVYSNGSANSA-----KFSSGFYSYSC 54
           M  +++AK A+D FRN +SK   ++P+ QES SR+Y NGS++ +     KFS GFY YS 
Sbjct: 32  MERFKKAKLAIDTFRNYASKINHRAPLHQESISRIYQNGSSSVSSSNQSKFS-GFYPYSS 90

Query: 55  ISQRL--------RNSYCNPNF-NTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVV 105
           +SQRL        +  + NP   ++ KR+YYVDRY V HF+PRGPR+W QNPR+V IV +
Sbjct: 91  VSQRLGLGFQMGTKKIHSNPFLGSSGKRFYYVDRYQVHHFKPRGPRRWFQNPRSVLIVFL 150

Query: 106 IGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDS 165
           +GSG FIT+Y GNLETVPYTKR HFVLL+K++E+++GE+QF+QMKAAFKGK+LPAIHP+S
Sbjct: 151 VGSGVFITVYFGNLETVPYTKRKHFVLLAKSMEKKIGENQFEQMKAAFKGKMLPAIHPES 210

Query: 166 VRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTE 225
           VRVRLIAKDIIEALQRGL+ ETVWSDMGYAS+E D  +E    R+TLRAL+EN E  K E
Sbjct: 211 VRVRLIAKDIIEALQRGLRQETVWSDMGYASSENDMKHEA-TGRETLRALTENEE--KVE 267

Query: 226 GKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIV 285
            KW++EDE+LDD W+Q SRKKGQE+G ++ TSHL+GLNWEVLVVN+PV+NA CLPGGKI+
Sbjct: 268 TKWYKEDEVLDDNWIQHSRKKGQERGSRAETSHLEGLNWEVLVVNDPVVNALCLPGGKII 327

Query: 286 VFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTM 345
           VFTGLL+HF+TDAEIATIIGHEV HAVARH AEGITKNLWFAILQLILYQFVMPDVVNTM
Sbjct: 328 VFTGLLDHFKTDAEIATIIGHEVGHAVARHVAEGITKNLWFAILQLILYQFVMPDVVNTM 387

Query: 346 STLFLRLPFSRKC 358
           STLFLRLPFSR+ 
Sbjct: 388 STLFLRLPFSRRM 400

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460776|ref|XP_004148121.1| PREDICTED: uncharacterized protein LOC101206881 [Cucumis sativus]

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 251/363 (69%), Positives = 291/363 (80%), Gaps = 9/363 (2%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNG---SANSAKFSSGFYSYSCISQ 57
           M  +R++K   DAFRN SSK  PK  +Q S SR+   G   S+     S GF S S I +
Sbjct: 1   MNCFRKSKFVFDAFRNPSSKIFPKDLIQGSRSRISHTGYSFSSGKTSNSHGFQSVSPIVR 60

Query: 58  RLR--NSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLY 115
           R        NP F  +KR+YYVDRY +QHF+PRGPR+W Q+PRT+ IVVV+GSG FIT+Y
Sbjct: 61  RFGEIGRRYNPFFGDSKRFYYVDRYRIQHFKPRGPRRWFQDPRTLLIVVVLGSGVFITVY 120

Query: 116 LGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDI 175
            GNLETVPYTKR HFVLLSK +ER++GES+F+QMKAAFKGKILPAIHP+SVRVRLIAKDI
Sbjct: 121 YGNLETVPYTKRRHFVLLSKPMERKIGESEFEQMKAAFKGKILPAIHPESVRVRLIAKDI 180

Query: 176 IEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEIL 235
           IEALQRGL+ E VW+D+GYAS       EG +  +TL AL ++    K EGKW++EDEIL
Sbjct: 181 IEALQRGLRQENVWNDLGYASEAVIGAPEG-SGHETLMALKDSGSE-KLEGKWYREDEIL 238

Query: 236 DDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFR 295
           DDKWV+ SRKKGQ  G Q+ TSHLDGLNWEVLVVNEPV+NAFCLPGGKIVVFTGLLEHFR
Sbjct: 239 DDKWVEHSRKKGQ--GSQANTSHLDGLNWEVLVVNEPVVNAFCLPGGKIVVFTGLLEHFR 296

Query: 296 TDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPFS 355
           +DAEIATIIGHEVAHAVARH+AEGITKNL FA+LQLILYQF+MPD+VNTMSTLFLRLPFS
Sbjct: 297 SDAEIATIIGHEVAHAVARHSAEGITKNLGFAVLQLILYQFIMPDIVNTMSTLFLRLPFS 356

Query: 356 RKC 358
           R+ 
Sbjct: 357 RRM 359

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499671|ref|XP_004160882.1| PREDICTED: uncharacterized LOC101206881 [Cucumis sativus]

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 251/363 (69%), Positives = 291/363 (80%), Gaps = 9/363 (2%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNG---SANSAKFSSGFYSYSCISQ 57
           M  +R++K   DAFRN SSK  PK  +Q S SR+   G   S+     S GF S S I +
Sbjct: 1   MNCFRKSKFVFDAFRNPSSKIFPKDLIQGSRSRISHTGYSFSSGRTSNSHGFQSVSPIVR 60

Query: 58  RLR--NSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLY 115
           R        NP F  +KR+YYVDRY +QHF+PRGPR+W Q+PRT+ IVVV+GSG FIT+Y
Sbjct: 61  RFGEIGRRYNPFFGDSKRFYYVDRYRIQHFKPRGPRRWFQDPRTLLIVVVLGSGVFITVY 120

Query: 116 LGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDI 175
            GNLETVPYTKR HFVLLSK +ER++GES+F+QMKAAFKGKILPAIHP+SVRVRLIAKDI
Sbjct: 121 YGNLETVPYTKRRHFVLLSKPMERKIGESEFEQMKAAFKGKILPAIHPESVRVRLIAKDI 180

Query: 176 IEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEIL 235
           IEALQRGL+ E VW+D+GYAS       EG +  +TL AL ++    K EGKW++EDEIL
Sbjct: 181 IEALQRGLRQENVWNDLGYASEAVIGAPEG-SGHETLMALKDSGSE-KLEGKWYREDEIL 238

Query: 236 DDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFR 295
           DDKWV+ SRKKGQ  G Q+ TSHLDGLNWEVLVVNEPV+NAFCLPGGKIVVFTGLLEHFR
Sbjct: 239 DDKWVEHSRKKGQ--GSQANTSHLDGLNWEVLVVNEPVVNAFCLPGGKIVVFTGLLEHFR 296

Query: 296 TDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPFS 355
           +DAEIATIIGHEVAHAVARH+AEGITKNL FA+LQLILYQF+MPD+VNTMSTLFLRLPFS
Sbjct: 297 SDAEIATIIGHEVAHAVARHSAEGITKNLGFAVLQLILYQFIMPDIVNTMSTLFLRLPFS 356

Query: 356 RKC 358
           R+ 
Sbjct: 357 RRM 359

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530935|ref|XP_003534034.1| PREDICTED: uncharacterized protein LOC100799127 [Glycine max]

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 245/369 (66%), Positives = 294/369 (79%), Gaps = 16/369 (4%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANS-AKFSS--GFYSYSCISQ 57
           M +YRR K ALD FR L+S+  P++P+ +  +R+ S+G  +S +K +S  GF S+   SQ
Sbjct: 1   MGWYRRGKLALDHFRRLASRVTPQNPIFQRGARICSSGYLDSGSKVASFNGFSSFCSTSQ 60

Query: 58  RLRNSYC---NPNFNT-----AKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSG 109
           RL        N NF+      AKR+YYVD  +V+HF+PRGP  W +NPR VFIVV++GSG
Sbjct: 61  RLGTRGVVGVNRNFHNSVLFGAKRFYYVDPRNVRHFKPRGPWHWFENPRHVFIVVMVGSG 120

Query: 110 AFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVR 169
             IT+Y GN+ETVPYTKRTH +LLSKA+ER+LGES+F+Q+K  FKGKILP IHP+SVRV 
Sbjct: 121 VLITVYFGNIETVPYTKRTHLILLSKAMERKLGESEFEQIKTGFKGKILPPIHPESVRVT 180

Query: 170 LIAKDIIEALQRGL-KHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKW 228
           +IAKDII+ALQRGL K E VWSD+GYAS     V EG   R+TL AL+ + E  K EG W
Sbjct: 181 MIAKDIIDALQRGLRKEEQVWSDLGYASEHAMLV-EG-DGRETLNALAGSEE--KIEGNW 236

Query: 229 HQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFT 288
            +EDEILDDKW+QQSRKKGQE+G Q+ATSHLDGLNWE+LVVNEPV+NAFCLPGGKIVVFT
Sbjct: 237 AKEDEILDDKWIQQSRKKGQERGSQAATSHLDGLNWEILVVNEPVVNAFCLPGGKIVVFT 296

Query: 289 GLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTL 348
           GLLEHF++DAEIATIIGHEV HAVARH AEGITKNLWF ILQLILYQFV PD+V+TMS+L
Sbjct: 297 GLLEHFKSDAEIATIIGHEVGHAVARHGAEGITKNLWFTILQLILYQFVTPDIVHTMSSL 356

Query: 349 FLRLPFSRK 357
           FLRLPFSR+
Sbjct: 357 FLRLPFSRR 365

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455604|ref|XP_002269952.1| PREDICTED: mitochondrial metalloendopeptidase OMA1 [Vitis vinifera]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 246/363 (67%), Positives = 294/363 (80%), Gaps = 17/363 (4%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSA----NSAKFSSGFYSYSCIS 56
           M++YRRAK+A +A R+    A+P++P+QE  SR+  N S+    N+++ S GF  +S IS
Sbjct: 1   MSFYRRAKSAFNALRS----AIPRTPIQEPTSRITHNPSSIYSSNNSRVS-GFSPFSLIS 55

Query: 57  QR--LRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITL 114
            +  L+  Y NP    A+RYYYVDRY VQHFRPRGPR+W QNPRTVFIVVV+GSG  IT+
Sbjct: 56  CQIGLKRCYPNPFLGGARRYYYVDRYRVQHFRPRGPRRWFQNPRTVFIVVVVGSGVLITV 115

Query: 115 YLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKD 174
           Y GNLE +PYT RTHFVLLS+++ER++GE+QF+Q+K  FKGKILPAIHPDSVRVRLI+ D
Sbjct: 116 YFGNLEAIPYTNRTHFVLLSRSMERRIGEAQFEQLKGTFKGKILPAIHPDSVRVRLISND 175

Query: 175 IIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEI 234
           II+ALQRGL HE VWSD GYA+ E DF+ +    R+TL AL +        GKWH++DEI
Sbjct: 176 IIKALQRGLSHERVWSDPGYAA-EGDFMVDEARTRETLAALMDTPP-----GKWHKDDEI 229

Query: 235 LDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHF 294
           LDDKWV QSRK+ QE+G +  T HL+GLNWEVLVVNEPV+NAFCLPGGKIVVFTGLLEHF
Sbjct: 230 LDDKWVHQSRKEAQERGSRPTTQHLEGLNWEVLVVNEPVVNAFCLPGGKIVVFTGLLEHF 289

Query: 295 RTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPF 354
           RTDAEIATIIGHE+ HAVARHAAEGITKNLWFAILQLILYQF+MPDVV+ MSTL LRLPF
Sbjct: 290 RTDAEIATIIGHEIGHAVARHAAEGITKNLWFAILQLILYQFIMPDVVHAMSTLLLRLPF 349

Query: 355 SRK 357
           SR+
Sbjct: 350 SRR 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122540|ref|XP_002318862.1| predicted protein [Populus trichocarpa] gi|222859535|gb|EEE97082.1| predicted protein [Populus trichocarpa]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 226/306 (73%), Positives = 266/306 (86%), Gaps = 11/306 (3%)

Query: 71  AKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHF 130
           AKR+YYVDRY VQHF+PRGP++W +NPRTV IVV++GSGAFIT+Y GNLETVPYTKR HF
Sbjct: 18  AKRFYYVDRYRVQHFKPRGPKRWFRNPRTVLIVVLVGSGAFITVYYGNLETVPYTKRRHF 77

Query: 131 VLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWS 190
           VLLSK +ER++GE+QF+QMKAAFKGK+LPA+HP+SVR+RLIA+DII+ALQRGLK E VWS
Sbjct: 78  VLLSKTMERKMGETQFEQMKAAFKGKMLPALHPESVRMRLIAQDIIDALQRGLKREQVWS 137

Query: 191 DMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEK 250
           DMGYAS E+D  +E  +A +TL+ALSE  E  K EGKW++EDEILDD WVQQ RKK  EK
Sbjct: 138 DMGYASQESDMAHEA-SAHETLKALSEREE--KIEGKWYKEDEILDDNWVQQCRKK--EK 192

Query: 251 GLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAH 310
           GL++  SHLDGLNWE+LVVNEPV+NAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV H
Sbjct: 193 GLKADASHLDGLNWEILVVNEPVVNAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVGH 252

Query: 311 AVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPFSRKC------VSLFIL 364
           AVARHAAEGITKNLW AILQLILYQF+MPD+ N MS LFLRLPFSR+       V L ++
Sbjct: 253 AVARHAAEGITKNLWVAILQLILYQFIMPDIANAMSVLFLRLPFSRRMEIEADYVGLLLM 312

Query: 365 SNSFWN 370
           +++ ++
Sbjct: 313 ASAGYD 318

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177873|dbj|BAB11243.1| unnamed protein product [Arabidopsis thaliana]

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/386 (57%), Positives = 291/386 (75%), Gaps = 23/386 (5%)

Query: 1   MAYYRRAKAALDAFR-NLSSKAVPKSPVQESCSRVYSN-GSAN-SAKFSS------GFYS 51
           M++YRR K   D+ R N++ K +P+S V    SR+ +  GS+N SAKFSS      G  S
Sbjct: 44  MSWYRRTKLVFDSLRRNINPKILPRSHV---TSRINNPIGSSNPSAKFSSISSREVGLRS 100

Query: 52  YSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAF 111
           ++ + +       NP  +  KRYYYVDRY V+HF+PRGP +W QNPRTVF VV++GS   
Sbjct: 101 WTSLGRNTNRIAYNPFLSQPKRYYYVDRYQVRHFKPRGPGRWFQNPRTVFTVVLVGSVGL 160

Query: 112 ITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLI 171
           ITL +GN ET+PYTKRTHF+LLSK +E+ LGE+QF+Q+K  ++GKILPA HP+S+RVRLI
Sbjct: 161 ITLIVGNTETIPYTKRTHFILLSKPMEKLLGETQFEQIKKTYQGKILPATHPESIRVRLI 220

Query: 172 AKDIIEALQRGLKHETVWSDMGYASTETDF-VNEGRAARDTLRALSENSERGKTEGKWHQ 230
           AK++I+ALQRGL +E VWSD+GYASTE+       +  ++   A+S   E   T+ KW +
Sbjct: 221 AKEVIDALQRGLSNERVWSDLGYASTESSLGGGSDKGVKEMEMAMS--GEDTMTDMKWSK 278

Query: 231 EDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGL 290
           ED++LDD+W+Q+SRKK  +    +ATSHL+G++WEVLVVNEP++NAFCLP GKIVVFTGL
Sbjct: 279 EDQVLDDQWIQKSRKKDSKA--HAATSHLEGISWEVLVVNEPIVNAFCLPAGKIVVFTGL 336

Query: 291 LEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFL 350
           L HF++DAE+AT+IGHEV HAVARH AEGITKNLWFAILQL+LYQFVMPD+VNTMS LFL
Sbjct: 337 LNHFKSDAEVATVIGHEVGHAVARHVAEGITKNLWFAILQLVLYQFVMPDLVNTMSALFL 396

Query: 351 RLPFSRKC------VSLFILSNSFWN 370
           RLPFSRK       + L +L+++ ++
Sbjct: 397 RLPFSRKMEIEADYIGLLLLASAGYD 422

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30696099|ref|NP_199987.2| Peptidase family M48 family protein [Arabidopsis thaliana] gi|26451602|dbj|BAC42898.1| unknown protein [Arabidopsis thaliana] gi|332008738|gb|AED96121.1| Peptidase family M48 family protein [Arabidopsis thaliana]

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/386 (57%), Positives = 291/386 (75%), Gaps = 23/386 (5%)

Query: 1   MAYYRRAKAALDAFR-NLSSKAVPKSPVQESCSRVYSN-GSAN-SAKFSS------GFYS 51
           M++YRR K   D+ R N++ K +P+S V    SR+ +  GS+N SAKFSS      G  S
Sbjct: 1   MSWYRRTKLVFDSLRRNINPKILPRSHV---TSRINNPIGSSNPSAKFSSISSREVGLRS 57

Query: 52  YSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAF 111
           ++ + +       NP  +  KRYYYVDRY V+HF+PRGP +W QNPRTVF VV++GS   
Sbjct: 58  WTSLGRNTNRIAYNPFLSQPKRYYYVDRYQVRHFKPRGPGRWFQNPRTVFTVVLVGSVGL 117

Query: 112 ITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLI 171
           ITL +GN ET+PYTKRTHF+LLSK +E+ LGE+QF+Q+K  ++GKILPA HP+S+RVRLI
Sbjct: 118 ITLIVGNTETIPYTKRTHFILLSKPMEKLLGETQFEQIKKTYQGKILPATHPESIRVRLI 177

Query: 172 AKDIIEALQRGLKHETVWSDMGYASTETDF-VNEGRAARDTLRALSENSERGKTEGKWHQ 230
           AK++I+ALQRGL +E VWSD+GYASTE+       +  ++   A+S   E   T+ KW +
Sbjct: 178 AKEVIDALQRGLSNERVWSDLGYASTESSLGGGSDKGVKEMEMAMS--GEDTMTDMKWSK 235

Query: 231 EDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGL 290
           ED++LDD+W+Q+SRKK  +    +ATSHL+G++WEVLVVNEP++NAFCLP GKIVVFTGL
Sbjct: 236 EDQVLDDQWIQKSRKKDSKA--HAATSHLEGISWEVLVVNEPIVNAFCLPAGKIVVFTGL 293

Query: 291 LEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFL 350
           L HF++DAE+AT+IGHEV HAVARH AEGITKNLWFAILQL+LYQFVMPD+VNTMS LFL
Sbjct: 294 LNHFKSDAEVATVIGHEVGHAVARHVAEGITKNLWFAILQLVLYQFVMPDLVNTMSALFL 353

Query: 351 RLPFSRKC------VSLFILSNSFWN 370
           RLPFSRK       + L +L+++ ++
Sbjct: 354 RLPFSRKMEIEADYIGLLLLASAGYD 379

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792483|ref|XP_002864126.1| peptidase M48 family protein [Arabidopsis lyrata subsp. lyrata] gi|297309961|gb|EFH40385.1| peptidase M48 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/377 (57%), Positives = 287/377 (76%), Gaps = 11/377 (2%)

Query: 1   MAYYRRAKAALDAFR-NLSSKAVPKSPVQESCSRVYSNGSANSAKFSSGFYSYSCISQRL 59
           M++YRR K   D+ R N++ K +P+S +    + + S+G ++ +    G  S++ + Q  
Sbjct: 1   MSWYRRTKLVFDSLRRNINPKILPRSHLPSRINPIGSSGFSSISSRQVGLRSWTSLGQNT 60

Query: 60  RNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNL 119
                NP  +  KR YYVDRY V+HF+PRGP +W QNPRTVF VV++GS A ITLY+GNL
Sbjct: 61  NRIAYNPFLSVPKRNYYVDRYQVRHFKPRGPGRWFQNPRTVFTVVIVGSVALITLYVGNL 120

Query: 120 ETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEAL 179
           ETVPYTKRTHF+LLSK +E+ LGE+QF+Q+K  +KGKILPAIHP+S+RVRLIAK++I+AL
Sbjct: 121 ETVPYTKRTHFILLSKPMEKLLGETQFEQIKKTYKGKILPAIHPESIRVRLIAKEVIDAL 180

Query: 180 QRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKW 239
           QRGL +E VWSD+GYASTE+      +  ++   A+S   E   T+ KW + D++LDD+W
Sbjct: 181 QRGLSNERVWSDLGYASTESSLGGGDKGVKEIEMAMS--GEDTMTDMKWSKADQVLDDEW 238

Query: 240 VQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAE 299
           +QQSRKK  +    +A+SHL+G++WEVLVVNEP++NAFCLP GKIVVFTGLL+ F++DAE
Sbjct: 239 IQQSRKKDSKA--HAASSHLEGISWEVLVVNEPIVNAFCLPAGKIVVFTGLLDIFKSDAE 296

Query: 300 IATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPFSRKC- 358
           +AT+IGHEV HAVARH AEGITKNLWFA+LQL+LYQFVMPD+VNTMS LFLRLPFSRK  
Sbjct: 297 VATVIGHEVGHAVARHVAEGITKNLWFAVLQLVLYQFVMPDLVNTMSALFLRLPFSRKME 356

Query: 359 -----VSLFILSNSFWN 370
                + L +L+++ ++
Sbjct: 357 IEADYIGLLLLASAGYD 373

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517492|ref|XP_003527421.1| PREDICTED: uncharacterized protein LOC100800848 [Glycine max]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/368 (58%), Positives = 269/368 (73%), Gaps = 16/368 (4%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANSAKFSSGFYSYS---CISQ 57
           M +YRR K ALD F +L+S+ VP++P+ +  SR++ +G  +S    + F   S    ISQ
Sbjct: 1   MGWYRRGKLALDRFHSLASRVVPQNPIFQHSSRIWQSGYLDSGSKGARFSGLSLCCSISQ 60

Query: 58  RL--------RNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSG 109
           RL          ++ NP    A R+YYVD  +V+HF+PRGPR W QN R +F+ V++G  
Sbjct: 61  RLGAQGVVGVNGNFHNPFLLGANRFYYVDPCNVRHFKPRGPRHWFQNSRHIFVAVMVGW- 119

Query: 110 AFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVR 169
             IT++ GNLETVPYTKRTH +LLSKA+ER+LGESQF+Q+KA F+GKILP IHP+SVRV 
Sbjct: 120 VLITVFFGNLETVPYTKRTHLILLSKAMERRLGESQFEQIKADFEGKILPPIHPESVRVT 179

Query: 170 LIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWH 229
           +IA +II+AL R L  E  W+D GYAS E     EG   R+TL AL  + E  K EG  H
Sbjct: 180 MIANEIIDALLRRLMKEQGWNDFGYAS-EHAMPVEGDG-RETLSALVGSEE--KVEGSCH 235

Query: 230 QEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTG 289
           +E++ILD KWV+ SRK GQE+G   ATSHL GL+WE+LVVN+P +NAFCLPGGKIVVFTG
Sbjct: 236 KENKILDGKWVRLSRKNGQERGSLIATSHLVGLDWEILVVNKPDLNAFCLPGGKIVVFTG 295

Query: 290 LLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLF 349
           L +HF++DAEIATIIGHEV H VARH AEGITKNLWFAILQLILY   +PD+VN +S+LF
Sbjct: 296 LFDHFKSDAEIATIIGHEVGHVVARHNAEGITKNLWFAILQLILYLLFIPDIVNIISSLF 355

Query: 350 LRLPFSRK 357
           L LPFSR+
Sbjct: 356 LHLPFSRR 363

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
TAIR|locus:2165356	442	AT5G51740 [Arabidopsis thalian	0.921	0.791	0.569	1.3e-107
SGD|S000001795	345	OMA1 "Metalloendopeptidase of	0.265	0.292	0.346	5.6e-14
ASPGD|ASPL0000044232	376	AN1850 [Emericella nidulans (t	0.25	0.252	0.285	8.6e-13
POMBASE|SPAP14E8.04	337	oma1 "metallopeptidase Oma1 (p	0.265	0.299	0.289	9.9e-11
CGD|CAL0001997	336	orf19.3827 [Candida albicans (	0.205	0.232	0.262	2.2e-09
RGD|1304821	504	Oma1 "zinc metallopeptidase ho	0.115	0.087	0.431	4.4e-06
UNIPROTKB|E1C7A6	468	OMA1 "Uncharacterized protein"	0.123	0.100	0.425	5.4e-06
UNIPROTKB|H7BZX2	328	OMA1 "Metalloendopeptidase OMA	0.115	0.134	0.409	6.5e-06
MGI|MGI:1914263	521	Oma1 "OMA1 homolog, zinc metal	0.113	0.082	0.418	1.2e-05
DICTYBASE|DDB_G0289335	687	DDB_G0289335 "Metalloendopepti	0.355	0.196	0.288	1.9e-05

TAIR|locus:2165356 AT5G51740 [Arabidopsis thaliana (taxid:3702)]

 Score = 1064 (379.6 bits), Expect = 1.3e-107, P = 1.3e-107
 Identities = 209/367 (56%), Positives = 271/367 (73%)

Query:     1 MAYYRRAKAALDAFR-NLSSKAVPKSPVQESCSRVYSN-GSAN-SAKFSS------GFYS 51
             M++YRR K   D+ R N++ K +P+S V    SR+ +  GS+N SAKFSS      G  S
Sbjct:     1 MSWYRRTKLVFDSLRRNINPKILPRSHVT---SRINNPIGSSNPSAKFSSISSREVGLRS 57

Query:    52 YSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAF 111
             ++ + +       NP  +  KRYYYVDRY V+HF+PRGP +W QNPRTVF VV++GS   
Sbjct:    58 WTSLGRNTNRIAYNPFLSQPKRYYYVDRYQVRHFKPRGPGRWFQNPRTVFTVVLVGSVGL 117

Query:   112 ITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLI 171
             ITL +GN ET+PYTKRTHF+LLSK +E+ LGE+QF+Q+K  ++GKILPA HP+S+RVRLI
Sbjct:   118 ITLIVGNTETIPYTKRTHFILLSKPMEKLLGETQFEQIKKTYQGKILPATHPESIRVRLI 177

Query:   172 AKDIIEALQRGLKHETVWSDMGYASTETDFVN-EGRAARDTLRALSENSERGKTEGKWHQ 230
             AK++I+ALQRGL +E VWSD+GYASTE+       +  ++   A+S   E   T+ KW +
Sbjct:   178 AKEVIDALQRGLSNERVWSDLGYASTESSLGGGSDKGVKEMEMAMS--GEDTMTDMKWSK 235

Query:   231 EDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGL 290
             ED++LDD+W+Q+SRKK  +    +ATSHL+G++WEVLVVNEP++NAFCLP GKIVVFTGL
Sbjct:   236 EDQVLDDQWIQKSRKKDSKA--HAATSHLEGISWEVLVVNEPIVNAFCLPAGKIVVFTGL 293

Query:   291 LEHFRTDAEIATIIGXXXXXXXXXXXXXGITKNLWFAILQLILYQFVMPDVVNTMSTLFL 350
             L HF++DAE+AT+IG             GITKNLWFAILQL+LYQFVMPD+VNTMS LFL
Sbjct:   294 LNHFKSDAEVATVIGHEVGHAVARHVAEGITKNLWFAILQLVLYQFVMPDLVNTMSALFL 353

Query:   351 RLPFSRK 357
             RLPFSRK
Sbjct:   354 RLPFSRK 360

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

SGD|S000001795 OMA1 "Metalloendopeptidase of the mitochondrial inner membrane" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 157 (60.3 bits), Expect = 5.6e-14, Sum P(2) = 5.6e-14
 Identities = 36/104 (34%), Positives = 55/104 (52%)

Query:   257 SHLDGLNWEVLVVNEPVI--NAFCLPGGKIVVFTGLLEHFRTDAEIATIIGXXXXXXXXX 314
             S LDG+ WE+ VVN+P    NAF LPGGK+ +F+ +L     D  IAT++          
Sbjct:   152 SLLDGIKWEIHVVNDPTASPNAFVLPGGKVFIFSSILPICANDDGIATVLAHEFAHQLAR 211

Query:   315 XXXXGITKNLWFAILQLILYQFVMPDVVNT-MSTLFLRLPFSRK 357
                  ++K   +++L L+LY       +N  +   FLR+P SR+
Sbjct:   212 HTAENLSKAPIYSLLGLVLYTVTGAHAINNILLDGFLRMPASRQ 255

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS;IMP

GO:0008233 "peptidase activity" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IMP

GO:0006508 "proteolysis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

ASPGD|ASPL0000044232 AN1850 [Emericella nidulans (taxid:162425)]

 Score = 127 (49.8 bits), Expect = 8.6e-13, Sum P(2) = 8.6e-13
 Identities = 28/98 (28%), Positives = 52/98 (53%)

Query:   259 LDGLNWEVLVVNEP-VINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGXXXXXXXXXXXX 317
             +DG +W+V V+ +  ++NAF LPGGK+ VFTG+L   + +  +A ++G            
Sbjct:   186 IDGADWKVHVIKDDNMVNAFVLPGGKVFVFTGILPICKDEDGLAAVLGHEIAHVVAHHTG 245

Query:   318 XGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPFS 355
               ++ N  F  + +I    ++ D+   + +L L L +S
Sbjct:   246 ERMSNN--FVTMGVIFLAALLFDISGNIPSLLLNLMYS 281

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

POMBASE|SPAP14E8.04 oma1 "metallopeptidase Oma1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 113 (44.8 bits), Expect = 9.9e-11, Sum P(2) = 9.9e-11
 Identities = 31/107 (28%), Positives = 47/107 (43%)

Query:   255 ATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGXXXXXXXXX 314
             A S +  L WE+ V+ +P  NAF LPGGK+ VF G+L   + +  +A ++          
Sbjct:   144 AVSGMSDLKWELHVIRDPTPNAFVLPGGKVFVFEGILPMCKGEDGLAAVLAHETAHQVAR 203

Query:   315 XXXXGITKNLWFAILQLILYQFVMPDVVNTMSTLFLR----LPFSRK 357
                  I      A+  ++       D+   +S   L     LPFSRK
Sbjct:   204 HSAEKIAFTR--AVSCIVFLAAASLDLSGQLSHFLLNFGLLLPFSRK 248

GO:0004222 "metalloendopeptidase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

CGD|CAL0001997 orf19.3827 [Candida albicans (taxid:5476)]

 Score = 104 (41.7 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 21/80 (26%), Positives = 39/80 (48%)

Query:   257 SHLDGLNWEVLVVNEPVI--NAFCLPGGKIVVFTGLLEHFRTDAEIATIIGXXXXXXXXX 314
             +HL  L WE+ ++    +  NAF LP GKI +F+ ++   + +  +AT++          
Sbjct:   134 NHLKSLKWEINIIQNDSLPPNAFILPNGKIFIFSSIMPICKNEDGLATVLSHELSHQLAQ 193

Query:   315 XXXXGITKNLWFAILQLILY 334
                  ++K   + +L  ILY
Sbjct:   194 HSSEQLSKQPIYMVLSTILY 213

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

RGD|1304821 Oma1 "zinc metallopeptidase homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 103 (41.3 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
 Identities = 19/44 (43%), Positives = 29/44 (65%)

Query:   262 LNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIG 305
             +NW V VV+ P +NAF LP G++ VFTGLL       +++ ++G
Sbjct:   262 INWVVHVVHSPKVNAFVLPNGQVFVFTGLLNSVTDMHQLSFLLG 305

GO:0002024 "diet induced thermogenesis" evidence=ISO;ISS

GO:0004222 "metalloendopeptidase activity" evidence=ISO;ISS

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=ISO;ISS

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISO;ISS

GO:0006629 "lipid metabolic process" evidence=ISO;ISS

GO:0006950 "response to stress" evidence=ISO;ISS

GO:0007005 "mitochondrion organization" evidence=ISO

GO:0010637 "negative regulation of mitochondrial fusion" evidence=ISO;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=ISO;ISS

GO:0034982 "mitochondrial protein processing" evidence=IEA;ISO

GO:0042407 "cristae formation" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0097009 "energy homeostasis" evidence=ISO;ISS

UNIPROTKB|E1C7A6 OMA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 106 (42.4 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
 Identities = 20/47 (42%), Positives = 30/47 (63%)

Query:   259 LDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIG 305
             +  L W + VV+EP +NAF LP G++ VFTGLL       +++ I+G
Sbjct:   237 VSALTWAIHVVDEPEVNAFVLPNGEVFVFTGLLNAVSDIHQLSFILG 283

GO:0002024 "diet induced thermogenesis" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0010637 "negative regulation of mitochondrial fusion" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0034982 "mitochondrial protein processing" evidence=IEA

GO:0042407 "cristae formation" evidence=IEA

GO:0097009 "energy homeostasis" evidence=IEA

UNIPROTKB|H7BZX2 OMA1 "Metalloendopeptidase OMA1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 102 (41.0 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
 Identities = 18/44 (40%), Positives = 29/44 (65%)

Query:   262 LNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIG 305
             +NW + VV+ P+INAF LP G++ VFTG L       +++ ++G
Sbjct:   125 INWVIHVVDSPIINAFVLPNGQMFVFTGFLNSVTDIHQLSFLLG 168

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

MGI|MGI:1914263 Oma1 "OMA1 homolog, zinc metallopeptidase (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 102 (41.0 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
 Identities = 18/43 (41%), Positives = 28/43 (65%)

Query:   263 NWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIG 305
             NW V VV+ P +NAF LP G++ +FTGLL       +++ ++G
Sbjct:   280 NWVVHVVDSPAVNAFVLPNGQVFIFTGLLNSVTDVHQLSFLLG 322

GO:0002024 "diet induced thermogenesis" evidence=ISO

GO:0004222 "metalloendopeptidase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=ISO

GO:0006950 "response to stress" evidence=ISO

GO:0007005 "mitochondrion organization" evidence=IGI

GO:0008233 "peptidase activity" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0010637 "negative regulation of mitochondrial fusion" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=ISO

GO:0034982 "mitochondrial protein processing" evidence=IMP

GO:0042407 "cristae formation" evidence=IGI

GO:0046872 "metal ion binding" evidence=IEA

GO:0097009 "energy homeostasis" evidence=ISO

DICTYBASE|DDB_G0289335 DDB_G0289335 "Metalloendopeptidase OMA1, mitochondrial" [Dictyostelium discoideum (taxid:44689)]

 Score = 117 (46.2 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
 Identities = 41/142 (28%), Positives = 61/142 (42%)

Query:   220 ERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCL 279
             E G  E K    D  L +    Q+R +   K +   T   D L WE  VVN  V+NA  L
Sbjct:   397 EMGYEEMKTQLSDYFLPENNALQNRVREVAKRIIDVTDRPD-LAWECHVVNSEVVNACVL 455

Query:   280 PGGKIVVFTGLLEHFRTDAEIATIIGXXXXXXXXXXXXXGIT-KNLWFAILQLILYQFVM 338
             P GKI VF+ L +   ++ E+A++I               ++   L +  L L     V 
Sbjct:   456 PNGKIFVFSKLFDICESEDELASVISHEIGHAVARHAAEHLSISKLGYMFLTLTR-GLVG 514

Query:   339 PDVVNTMSTLF----LRLPFSR 356
               +   ++T+F    L L +SR
Sbjct:   515 ETITGNLTTMFSANLLNLRYSR 536

GO:0016020 "membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.24	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	380
pfam01435	223	pfam01435, Peptidase_M48, Peptidase family M48	1e-18
COG0501	302	COG0501, HtpX, Zn-dependent protease with chaperon	2e-13
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	2e-13
COG4784	479	COG4784, COG4784, Putative Zn-dependent protease [	1e-11

>gnl|CDD|216503 pfam01435, Peptidase_M48, Peptidase family M48

 Score = 83.6 bits (207), Expect = 1e-18
 Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 29/142 (20%)

Query: 235 LDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGK---IVVFTGLL 291
           L +  +Q+     +     + ++      WEV VV+ P  NAF L GGK   +VV TGLL
Sbjct: 29  LRNARLQR---VVER---LADSAGAGFPPWEVYVVDSPQPNAFALGGGKNKRVVVTTGLL 82

Query: 292 EHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMS----- 346
               T+ E+A ++GHE+ H  ARH+ E    ++   +L  +L       +          
Sbjct: 83  LA-LTEDELAAVLGHEIGHIKARHSVE----SMSQGLLLNLLLLLGAAALGGRALGFNAN 137

Query: 347 ----------TLFLRLPFSRKC 358
                        L LP+SRK 
Sbjct: 138 GFLTALGIFLLQLLLLPYSRKQ 159

Length = 223

>gnl|CDD|223575 COG0501, HtpX, Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]

 Score = 70.3 bits (172), Expect = 2e-13
 Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 20/122 (16%)

Query: 255 ATSHLDGLNWEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEVAH 310
           A         EV ++  P  NAF L G    G++VV TGLL+    D E+  ++ HE+ H
Sbjct: 109 ARQAGIPHMPEVYILETPQPNAFALGGGPKNGRVVVTTGLLDLL-NDDELEAVLAHELGH 167

Query: 311 AVARHAAEGITKNLWFAILQLILYQFVMP---------------DVVNTMSTLFLRLPFS 355
              RH    +T     A   ++L    +                 ++       L L FS
Sbjct: 168 IKNRHTLVRLTLRGLLASAFVLLATLALAAGLLGEAALALLLLLLLLALFLATLLVLAFS 227

Query: 356 RK 357
           RK
Sbjct: 228 RK 229

Length = 302

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 255 ATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVAR 314
           A + L    +   +VN+  INAF  PGG +VV TGLL     ++E+A +I HE+ H   R
Sbjct: 85  AAADLVKTPFTFFLVNDDSINAFATPGGYVVVNTGLLLTAENESELAGVIAHEIGHVAQR 144

Query: 315 HAAEGITK---NLWFAILQLIL 333
           H A  + +       AI  ++L
Sbjct: 145 HLARSMEQQQRAAPMAIAGMLL 166

Length = 484

>gnl|CDD|227123 COG4784, COG4784, Putative Zn-dependent protease [General function prediction only]

 Score = 65.3 bits (159), Expect = 1e-11
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 9/114 (7%)

Query: 211 TLRALSENSERGKTEGKWHQE------DEILDDKWVQQSRKKGQEKGLQSATSHLDGLNW 264
           T+  + +N    +   + H         E  D K  +   +     G  +A S      +
Sbjct: 32  TVDNVQKNDPLAQMGARQHPRILATYGGEYRDPKLERMVARIV---GALTAVSENPQQTY 88

Query: 265 EVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAE 318
            + ++N P INAF LPGG + +  GLL      +E+A ++ HE+ H  A H  +
Sbjct: 89  RITILNSPNINAFALPGGYLYITRGLLALANDSSEVAAVLAHEMGHVTANHGIQ 142

Length = 479

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	380
KOG2661	424	consensus Peptidase family M48 [Posttranslational	100.0
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.95
COG4784	479	Putative Zn-dependent protease [General function p	99.93
PF01435	226	Peptidase_M48: Peptidase family M48 This is family	99.73
COG0501	302	HtpX Zn-dependent protease with chaperone function	99.66
PRK03982	288	heat shock protein HtpX; Provisional	99.61
PRK02870	336	heat shock protein HtpX; Provisional	99.61
PRK01345	317	heat shock protein HtpX; Provisional	99.6
PRK03001	283	M48 family peptidase; Provisional	99.55
PRK03072	288	heat shock protein HtpX; Provisional	99.52
PRK04897	298	heat shock protein HtpX; Provisional	99.49
PRK05457	284	heat shock protein HtpX; Provisional	99.4
PRK02391	296	heat shock protein HtpX; Provisional	99.39
PRK01265	324	heat shock protein HtpX; Provisional	99.36
KOG2719	428	consensus Metalloprotease [General function predic	98.13
PF13203	292	DUF2201_N: Putative metallopeptidase domain	96.74
PF05569	299	Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR0	96.47
PF06114	122	DUF955: Domain of unknown function (DUF955); Inter	95.21
PF04228	292	Zn_peptidase: Putative neutral zinc metallopeptida	94.56
PF13699	79	DUF4157: Domain of unknown function (DUF4157)	92.52
PF10263	157	SprT-like: SprT-like family; InterPro: IPR006640 T	90.97
smart00731	146	SprT SprT homologues. Predicted to have roles in t	90.89
COG4219	337	MecR1 Antirepressor regulating drug resistance, pr	89.17
PRK04351	149	hypothetical protein; Provisional	88.98
COG2321	295	Predicted metalloprotease [General function predic	88.56
PF10026	195	DUF2268: Predicted Zn-dependent protease (DUF2268)	87.48
PF12388	211	Peptidase_M57: Dual-action HEIGH metallo-peptidase	87.39
COG1451	223	Predicted metal-dependent hydrolase [General funct	86.37
PF04450	205	BSP: Peptidase of plants and bacteria; InterPro: I	86.19
PF13485	128	Peptidase_MA_2: Peptidase MA superfamily	83.63
PF01863	205	DUF45: Protein of unknown function DUF45; InterPro	81.61

>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.4e-65  Score=494.64  Aligned_cols=304  Identities=32%  Similarity=0.496  Sum_probs=275.7

Q ss_pred             ChhhhhhhHHHHHHhh-cccCCCCCCCcccccc-ccccCC----CCCcccccCCcccceecccccccccCCCCCCCCcce
Q 016945            1 MAYYRRAKAALDAFRN-LSSKAVPKSPVQESCS-RVYSNG----SANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRY   74 (380)
Q Consensus         1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~   74 (380)
                      |.|||+.|+.+|.+++ ++++|.|++....+.+ .+.++.    .+...|.+.|++++.+.-+.++..-+|||.+.+.+|
T Consensus        44 ~~~~~~~~~~~~~l~~~~~~~i~~~t~~~t~~n~~~~~~~~~~~~t~v~S~~v~l~~~~~s~Rn~Ng~~y~rFqsnp~~y  123 (424)
T KOG2661|consen   44 HFYSTFNNKRTGGLSSTKSKEIWRITSKCTVWNDAFSRQLLIKEVTAVPSLSVLLPLSPASIRNINGHTYPRFQSNPVPY  123 (424)
T ss_pred             eeeeeecchhcccccccCCccceecccccceehhhhhhccchhhhhcccccccccccchhhhhccCccccchhhcCCccH
Confidence            6899999999999999 9999999999877776 333222    344478889999999999999999999999999999


Q ss_pred             eEeecceeeeeccCCCCccccCCchhHHHHHHHHHHHHHHHhhcCCcCCCccchhhcCCCHHHHHHHHHHHHHHHHHHhc
Q 016945           75 YYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFK  154 (380)
Q Consensus        75 y~~~~~~~~~f~~rg~~~w~~~~r~~~~~~~~g~g~~~~~y~~~le~vP~TgR~rfills~~~E~~lg~~~y~qi~~~~~  154 (380)
                      |+.+++.|+||+|++..+|++|+|++++++.+|+.++++||++|+|++|+|||+||+++|+++|+-||+.+|+++++|++
T Consensus       124 s~~~r~~~~sfkpn~~dk~f~n~rk~f~~lf~G~~~~~vfyfthlE~~Pit~Rsrfillskp~ekllge~~ye~im~eyq  203 (424)
T KOG2661|consen  124 SLMIRKWWQSFKPNKKDKVFENIRKNFWKLFLGLLLFVVFYFTHLEVSPITGRSRFILLSKPQEKLLGELEYEAIMEEYQ  203 (424)
T ss_pred             HHHHHHHHHhcCCCCccchhhhHHHHHHHHHhhccceEEEEEeeeeeeccCCcceeeeccCHHHHHhhHHHHHHHHHHhc
Confidence            99999999999999999999999999999998875566799999999999999999999999999999999999999999


Q ss_pred             CCCCCCCChhhHHHHHHHHHHHHHHHhcccccccccccCCCCccccccccchhhhhHHhhhhhccccccccCCccccccc
Q 016945          155 GKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEI  234 (380)
Q Consensus       155 ~~iLP~~hp~s~rVr~Ia~rIi~a~~~~l~~e~~~~~~gy~~~~~~~~~~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~  234 (380)
                      +++||+.||++.+|++|.++||+++..                                                     
T Consensus       204 ~~mLp~~hp~sl~V~~vlk~iIea~~~-----------------------------------------------------  230 (424)
T KOG2661|consen  204 NDMLPEKHPRSLAVKEVLKHIIEANKD-----------------------------------------------------  230 (424)
T ss_pred             CccCCcCCchhhHHHHHHHHHHHHhcc-----------------------------------------------------
Confidence            999999999999999999999998520                                                     


Q ss_pred             cchHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCcEeeeCCCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhh
Q 016945          235 LDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVAR  314 (380)
Q Consensus       235 ~~D~~~~~~~~~g~~~~~~~~~s~~~~~~w~v~Vv~s~~~NAfalPgG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~r  314 (380)
                                          .+ .+++.+|+++||++|.+||||+|||+|||+||+|..|++||+||+|||||+||.++|
T Consensus       231 --------------------~~-slsgIkWeihVVndPipNAFvLPgGKvfVFtgiLn~ck~ddglAtvLgHE~aHaVar  289 (424)
T KOG2661|consen  231 --------------------VP-SLSGIKWEIHVVNDPIPNAFVLPGGKVFVFTGILNSCKDDDGLATVLGHEIAHAVAR  289 (424)
T ss_pred             --------------------CC-cccCceeEEEEecCCCCceeeccCCeEEEEechhhcccChHHHHHHHHHHHHHHHHH
Confidence                                11 257889999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHhccchhHH-HHHHHHhhhCCCchHHHH------HHHHHHCCCChHhhhhcc
Q 016945          315 HAAEGITKNLWFAILQLILYQFVMPDVV-NTMSTLFLRLPFSRKCVS------LFILSNSFWNLWACLLVF  378 (380)
Q Consensus       315 H~~e~~~~~~~~~il~~il~~~~~~d~~-~~~~~l~~~lpySR~~E~------l~~m~rAGYnP~a~~~~f  378 (380)
                      |++|.+++..+.++++.++..+..++.. +.+.+.++.+||||++|.      +.+|++|||||.+...++
T Consensus       290 H~AEki~k~~~~siLgLvlyt~~~a~~~n~~Ll~~flrlPfSRKMEtEADyIGLlLma~Acfdpras~tvw  360 (424)
T KOG2661|consen  290 HAAEKIGKVHLLSILGLVLYTMIWAICPNDKLLEYFLRLPFSRKMETEADYIGLLLMAKACFDPRASSTVW  360 (424)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHhhccchHHHHHHHhcCcchhhhhhhhhHHHHHHHHHhhcCcccchHHH
Confidence            9999999999999999888766555443 377888999999999999      899999999999988764

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.95  E-value=1.3e-27  Score=243.51  Aligned_cols=176  Identities=26%  Similarity=0.342  Sum_probs=138.9

Q ss_pred             cCCCccchhhcCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCChh-hHHHHHHHHHHHHHHHhcccccccccccCCCCccc
Q 016945          121 TVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPD-SVRVRLIAKDIIEALQRGLKHETVWSDMGYASTET  199 (380)
Q Consensus       121 ~vP~TgR~rfills~~~E~~lg~~~y~qi~~~~~~~iLP~~hp~-s~rVr~Ia~rIi~a~~~~l~~e~~~~~~gy~~~~~  199 (380)
                      ..|.+|....-.+|+++|..+|...+.|+..+  ..+.  .||+ ...|+.++.+|+++                     
T Consensus        32 ~lp~ig~~~~s~ls~~qev~~g~~~~~Qlr~~--~~~i--~D~el~~yv~~~g~rL~~~---------------------   86 (484)
T COG4783          32 LLPDIGVSAGSTLSPAQEVALGDPANAQLRGS--VPLI--RDPELEEYVNSLGQRLAAA---------------------   86 (484)
T ss_pred             hcchhhhhhhhcCCHHHHHHhhHHHHHHhccC--CCCc--CCHHHHHHHHHHHHHHHHh---------------------
Confidence            45788999999999999999999988887765  2333  2455 44666666666654                     


Q ss_pred             cccccchhhhhHHhhhhhccccccccCCccccccccchHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCcEeee
Q 016945          200 DFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCL  279 (380)
Q Consensus       200 ~~~~~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g~~~~~~~~~s~~~~~~w~v~Vv~s~~~NAfal  279 (380)
                                                                               +...+.+++|++|+|+.+||||+
T Consensus        87 ---------------------------------------------------------a~~~~~~f~f~lV~d~~iNAFA~  109 (484)
T COG4783          87 ---------------------------------------------------------ADLVKTPFTFFLVNDDSINAFAT  109 (484)
T ss_pred             ---------------------------------------------------------cCCCCCCeEEEEecCCccchhhc
Confidence                                                                     23456789999999999999999


Q ss_pred             CCCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHHHHH------HHHHHHHHHHHhccchhH--HH----HHHH
Q 016945          280 PGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKN------LWFAILQLILYQFVMPDV--VN----TMST  347 (380)
Q Consensus       280 PgG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~~~~------~~~~il~~il~~~~~~d~--~~----~~~~  347 (380)
                      |||+|+|+||||..++||+|||+||||||||+..||..+.+.+.      .+.+++..++.+..+++.  ++    ..+.
T Consensus       110 ~Gg~v~vntGLll~ae~esElagViAHEigHv~qrH~aR~~e~~~r~~~~~i~~ml~gi~aa~a~~~ag~a~iag~~a~~  189 (484)
T COG4783         110 PGGYVVVNTGLLLTAENESELAGVIAHEIGHVAQRHLARSMEQQQRAAPMAIAGMLLGILAALAGADAGMAGIAGALAGA  189 (484)
T ss_pred             CCceEEEehHHHHhcCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhchhHHHHHHHHHHHHHhCccccHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999874      344444444444333331  22    2223


Q ss_pred             HhhhCCCchHHHH------HHHHHHCCCChHhhhhcc
Q 016945          348 LFLRLPFSRKCVS------LFILSNSFWNLWACLLVF  378 (380)
Q Consensus       348 l~~~lpySR~~E~------l~~m~rAGYnP~a~~~~f  378 (380)
                      ....+.|||++|.      +.+|.++||||.+|..||
T Consensus       190 ~~g~L~~sR~~E~eADr~Gi~~L~raGydp~gM~~ff  226 (484)
T COG4783         190 AQGQLNFSRQNEQEADRIGITTLVRAGYDPQGMPEFF  226 (484)
T ss_pred             hhhhhhcchhhHHHHHHHHHHHHHHcCCCchhHHHHH
Confidence            3456789999999      999999999999999998

>COG4784 Putative Zn-dependent protease [General function prediction only]

Probab=99.93  E-value=4.8e-26  Score=223.94  Aligned_cols=179  Identities=21%  Similarity=0.286  Sum_probs=141.2

Q ss_pred             cCCcCCCccchhhcCCCHHHHHH-HHHHHHHHHHHHhcCCCCCCCChhhH-HHHHHHHHHHHHHHhcccccccccccCCC
Q 016945          118 NLETVPYTKRTHFVLLSKAVERQ-LGESQFQQMKAAFKGKILPAIHPDSV-RVRLIAKDIIEALQRGLKHETVWSDMGYA  195 (380)
Q Consensus       118 ~le~vP~TgR~rfills~~~E~~-lg~~~y~qi~~~~~~~iLP~~hp~s~-rVr~Ia~rIi~a~~~~l~~e~~~~~~gy~  195 (380)
                      .|.-.|-|+..-+..+++.++.. ||.++-..|+++|++.-   +||-.. .|.+|+.++..                  
T Consensus        21 ~~~~~Ps~~p~~v~~v~~n~~laqmgar~hprIla~yggeY---~D~Kler~Vari~g~lt~------------------   79 (479)
T COG4784          21 ESGVQPSDNPQTVDNVQKNDPLAQMGARQHPRILATYGGEY---RDPKLERMVARIVGALTA------------------   79 (479)
T ss_pred             ccccCCCCCcchHHHhhccChHhHhhhhhChhHHHhcCCcc---CCHHHHHHHHHHHhHhhh------------------
Confidence            57778999999999999887665 99999999999998764   344433 44444443322                  


Q ss_pred             CccccccccchhhhhHHhhhhhccccccccCCccccccccchHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCc
Q 016945          196 STETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVIN  275 (380)
Q Consensus       196 ~~~~~~~~~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g~~~~~~~~~s~~~~~~w~v~Vv~s~~~N  275 (380)
                                                                                  .|+.++..|.|.|++||.+|
T Consensus        80 ------------------------------------------------------------~S~~p~q~YriTilnSP~IN   99 (479)
T COG4784          80 ------------------------------------------------------------VSENPQQTYRITILNSPNIN   99 (479)
T ss_pred             ------------------------------------------------------------hccCCCceEEEEEecCCCcc
Confidence                                                                        23345778999999999999


Q ss_pred             EeeeCCCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHhhh
Q 016945          276 AFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVM----PDVVNTMSTLFLR  351 (380)
Q Consensus       276 AfalPgG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~~~~~~~~il~~il~~~~~----~d~~~~~~~l~~~  351 (380)
                      ||++|||++||+.|||..+.++.|||+||+|||||+.++|..++.++...-.+++.+.....+    ++.+...+.+ ..
T Consensus       100 AFALPGGYlYitRGLlAland~sEvAAVl~HEmgHVtAnHgi~rQ~~e~a~~ia~rvva~vl~~~~agk~A~~rGkl-rl  178 (479)
T COG4784         100 AFALPGGYLYITRGLLALANDSSEVAAVLAHEMGHVTANHGIQRQQREAAEVIASRVVAEVLGSDAAGKQALIRGKL-RL  178 (479)
T ss_pred             ccccCCceEEEehhHHHHcCCHHHHHHHHHhhhhheecchhHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHhhhhH-HH
Confidence            999999999999999999999999999999999999999999999987655555544333222    3333444444 45


Q ss_pred             CCCchHHHH------HHHHHHCCCChHhhhhcc
Q 016945          352 LPFSRKCVS------LFILSNSFWNLWACLLVF  378 (380)
Q Consensus       352 lpySR~~E~------l~~m~rAGYnP~a~~~~f  378 (380)
                      ..|||+||.      ++++.+|||||.|++.|.
T Consensus       179 a~fsRnqELqAD~iG~~~lgeAGYDP~A~~rfl  211 (479)
T COG4784         179 AQFSRNQELQADAIGIKMLGEAGYDPYAAARFL  211 (479)
T ss_pred             hhhccchhhhhhhhhHHHHHhcCCChHHHHHHH
Confidence            799999999      899999999999999874

>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification

Probab=99.73  E-value=6.5e-18  Score=155.03  Aligned_cols=137  Identities=26%  Similarity=0.381  Sum_probs=86.4

Q ss_pred             cchHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCcEeeeCCCe---EEEcHhHHhcCCCHHHHHHHHHHHHHHH
Q 016945          235 LDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGK---IVVFTGLLEHFRTDAEIATIIGHEVAHA  311 (380)
Q Consensus       235 ~~D~~~~~~~~~g~~~~~~~~~s~~~~~~w~v~Vv~s~~~NAfalPgG~---I~V~tGLL~~~~nddELAaVLaHEiaHv  311 (380)
                      .+++++++.++..      ....+.....++++|++++.+|||++|+|.   |+|++||++.+ |+|||++|||||+||+
T Consensus        28 ~~~~~L~~~v~~l------~~~~~~~~~~~~v~v~~~~~~NA~~~g~~~~~~I~v~~~ll~~~-~~~el~aVlaHElgH~  100 (226)
T PF01435_consen   28 LEDPELRRIVEEL------ARRAGLGIPPPRVYVIDSPSPNAFATGGGPRKRIVVTSGLLESL-SEDELAAVLAHELGHI  100 (226)
T ss_dssp             -HHHHHHHHHHHH------HHHHHCTSS--EEEEE--SSEEEEEETTTC--EEEEEHHHHHHS-SHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH------HHHhcCCCCCCeEEEEcCCCCcEEEEccCCCcEEEEeChhhhcc-cHHHHHHHHHHHHHHH
Confidence            4566676665521      111122345589999999999999999999   99999999665 9999999999999999


Q ss_pred             hhhcHHHHHHHHHHHHHHHHHHHhccch--h---HH------H---HHHHHhhhCCCchHHHH------HHH------HH
Q 016945          312 VARHAAEGITKNLWFAILQLILYQFVMP--D---VV------N---TMSTLFLRLPFSRKCVS------LFI------LS  365 (380)
Q Consensus       312 ~~rH~~e~~~~~~~~~il~~il~~~~~~--d---~~------~---~~~~l~~~lpySR~~E~------l~~------m~  365 (380)
                      ..+|....+....+..++..++......  .   ..      .   ..........+||.+|.      +.+      |.
T Consensus       101 ~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~E~~AD~~a~~~~~~~~~l~  180 (226)
T PF01435_consen  101 KHRHILKSLLISLLLSILFFALLALLIGSMSLFSAFGFIDILGILIAFLFQLLTNAFSRRQEYEADRYAARLGGDPALLA  180 (226)
T ss_dssp             HTTHCCCCCCHHH-HHHHHHHHHT-----HHHHHHHH----------HHSTT------HHHHHHHHHHHHHH------HH
T ss_pred             HcCCcchHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHhhcchhHHHHHHHHHHHHHhcCCcHHHH
Confidence            9999988865555444333222111100  0   00      0   02334577899999999      777      99


Q ss_pred             HCCCChHhhhhcc
Q 016945          366 NSFWNLWACLLVF  378 (380)
Q Consensus       366 rAGYnP~a~~~~f  378 (380)
                      ++||+|.++..+|
T Consensus       181 ~a~~~~~~~~~~l  193 (226)
T PF01435_consen  181 RALYKPAAAISAL  193 (226)
T ss_dssp             HTTS-TTHHHHHH
T ss_pred             HhCCCHHHHHHHH
Confidence            9999999987654

; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.

>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=1.4e-16  Score=152.94  Aligned_cols=99  Identities=32%  Similarity=0.415  Sum_probs=72.4

Q ss_pred             CCCeEEEEEeCCCCcEeeeCC----CeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHH-HHHH----
Q 016945          261 GLNWEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFA-ILQL----  331 (380)
Q Consensus       261 ~~~w~v~Vv~s~~~NAfalPg----G~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~~~~~~~~-il~~----  331 (380)
                      +..|+++|++++.+||||+|+    |.|+||+||++.+ |||||++|||||+||+..||+..++.-..+.. +...    
T Consensus       115 ~~~~~v~i~~~~~~NAFa~g~~~~~~~V~vt~gLl~~l-~~dEl~aVlaHElgHi~~rd~~~~~~~~~~~~~~~~~~~~~  193 (302)
T COG0501         115 PHMPEVYILETPQPNAFALGGGPKNGRVVVTTGLLDLL-NDDELEAVLAHELGHIKNRHTLVRLTLRGLLASAFVLLATL  193 (302)
T ss_pred             CCCCeeEEecCCCccceecCCCCCCeeEEecHHHHhhC-CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            447999999999999999998    8999999999966 99999999999999999999998655433222 1111    


Q ss_pred             HHHhc------cch----hHHHHHHHHhhhCCCchHHHH
Q 016945          332 ILYQF------VMP----DVVNTMSTLFLRLPFSRKCVS  360 (380)
Q Consensus       332 il~~~------~~~----d~~~~~~~l~~~lpySR~~E~  360 (380)
                      ++...      ...    .........++.++|||.+|.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SR~~E~  232 (302)
T COG0501         194 ALAAGLLGEAALALLLLLLLLALFLATLLVLAFSRKREY  232 (302)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            11100      000    111122344678999999999

>PRK03982 heat shock protein HtpX; Provisional

Probab=99.61  E-value=4.5e-15  Score=144.65  Aligned_cols=114  Identities=17%  Similarity=0.155  Sum_probs=80.3

Q ss_pred             eEEEEEeCCCCcEeee---C-CCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHH------
Q 016945          264 WEVLVVNEPVINAFCL---P-GGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLIL------  333 (380)
Q Consensus       264 w~v~Vv~s~~~NAfal---P-gG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~~~~~~~~il~~il------  333 (380)
                      .+++|++++.+|||++   | +|.|+|++||++.+ |+|||++|||||+||+.++|...++..+.+..++..+.      
T Consensus        86 p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~l-~~~El~AVlAHElgHi~~~h~~~~~~~~~~~~~~~~l~~~~~~~  164 (288)
T PRK03982         86 PKVAIVPTQTPNAFATGRDPKHAVVAVTEGILNLL-NEDELEGVIAHELTHIKNRDTLIQTIAATLAGAIMYLAQWLSWG  164 (288)
T ss_pred             CeEEEEeCCCcceEEeccCCCCeEEEeehHHHhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999   4 56899999999999 99999999999999999999988876654332221110      


Q ss_pred             --Hhccc------hhHHH--------HHHHHhhhCCCchHHHH-HH-HHHHCCCChHhhhhcc
Q 016945          334 --YQFVM------PDVVN--------TMSTLFLRLPFSRKCVS-LF-ILSNSFWNLWACLLVF  378 (380)
Q Consensus       334 --~~~~~------~d~~~--------~~~~l~~~lpySR~~E~-l~-~m~rAGYnP~a~~~~f  378 (380)
                        .....      +...+        .+...++.+.|||++|. .+ +-.+.++||.+++..+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~SR~~E~~AD~~A~~~~~~p~~l~~aL  227 (288)
T PRK03982        165 LWFGGGGRDDRNGGNPIGSLLLIILAPIAATLIQFAISRQREFSADEGGARLTGNPLALANAL  227 (288)
T ss_pred             HHhcccCccccccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHhCCHHHHHHHH
Confidence              00000      11111        11233456789999999 33 3445678999887765

>PRK02870 heat shock protein HtpX; Provisional

Probab=99.61  E-value=3e-14  Score=142.31  Aligned_cols=115  Identities=19%  Similarity=0.246  Sum_probs=79.0

Q ss_pred             CeEEEEEeCCCCcEeee----CCCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH----HH
Q 016945          263 NWEVLVVNEPVINAFCL----PGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLI----LY  334 (380)
Q Consensus       263 ~w~v~Vv~s~~~NAfal----PgG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~~~~~~~~il~~i----l~  334 (380)
                      .++|++++++.+||||+    |++.|+|++||++.+ |+|||++|||||+||+.++|.........+..++..+    +.
T Consensus       133 ~p~V~vi~~~~~NAFA~G~~~~~~~Ivvt~GLL~~L-~~dEL~aVlAHELgHik~~di~~~~~~~~l~~~~~~~~~~~~~  211 (336)
T PRK02870        133 MPKVYIIDAPYMNAFASGYSEKSAMVAITTGLLEKL-DRDELQAVMAHELSHIRHGDIRLTLCVGVLSNIMLIVADFLFY  211 (336)
T ss_pred             CCeEEEEcCCCCceEEecCCCCCcEEEEehHHhhhC-CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999999    578999999999998 9999999999999999999986654443332221111    11


Q ss_pred             hc-cc----hh---HH--------HHHHHHhhhCCCchHHHH-H-HHHHHCCCChHhhhhcc
Q 016945          335 QF-VM----PD---VV--------NTMSTLFLRLPFSRKCVS-L-FILSNSFWNLWACLLVF  378 (380)
Q Consensus       335 ~~-~~----~d---~~--------~~~~~l~~~lpySR~~E~-l-~~m~rAGYnP~a~~~~f  378 (380)
                      .+ ..    .+   ..        ..+...++.+.+||..|. . ..-++-..||.+++..+
T Consensus       212 ~~~g~~~~~~~~~~~~~~l~l~~~~~~~~~ll~~~iSR~rEy~AD~~Aa~ltg~p~aLasAL  273 (336)
T PRK02870        212 SFMGNRRNSGANRARMIILILRYVLPILTVLLMLFLSRTREYMADAGAVELMRDNEPMARAL  273 (336)
T ss_pred             HHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHH
Confidence            01 10    01   00        111234567889999999 2 22444455888877654

>PRK01345 heat shock protein HtpX; Provisional

Probab=99.60  E-value=5.9e-15  Score=146.17  Aligned_cols=114  Identities=19%  Similarity=0.242  Sum_probs=78.1

Q ss_pred             eEEEEEeCCCCcEeeeC----CCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHH---Hhc
Q 016945          264 WEVLVVNEPVINAFCLP----GGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLIL---YQF  336 (380)
Q Consensus       264 w~v~Vv~s~~~NAfalP----gG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~~~~~~~~il~~il---~~~  336 (380)
                      .+|+|++++.+|||+++    ++.|+|++|||+.+ |+|||++||||||||+.++|.........+..++..+.   ...
T Consensus        85 p~v~vid~~~~NAFa~G~~~~~~~V~vt~gLL~~L-~~dEL~aVlAHElgHi~~~d~~~~~l~~~~~~~~~~l~~~~~~~  163 (317)
T PRK01345         85 PKVYIIDNPQPNAFATGRNPENAAVAATTGLLQRL-SPEEVAGVMAHELAHVKNRDTLTMTITATLAGAISMLANFAFFF  163 (317)
T ss_pred             CcEEEEcCCCcceEEecCCCCCeEEEechHHHhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            47999999999999995    34799999999998 89999999999999999999987665444332222111   000


Q ss_pred             cc---------hhH-------HHHHHHHhhhCCCchHHHH-HHHH-HHCCCChHhhhhcc
Q 016945          337 VM---------PDV-------VNTMSTLFLRLPFSRKCVS-LFIL-SNSFWNLWACLLVF  378 (380)
Q Consensus       337 ~~---------~d~-------~~~~~~l~~~lpySR~~E~-l~~m-~rAGYnP~a~~~~f  378 (380)
                      ..         ..+       ...+...++.+.|||++|. .+.. .+...||.+++.+|
T Consensus       164 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~SR~rE~~AD~~A~~ltg~p~~L~~AL  223 (317)
T PRK01345        164 GGNRENNNGPLGLVGTLAAMIVAPLAAMLVQMAISRTREYAADRRGAEICGNPLWLASAL  223 (317)
T ss_pred             cCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            00         001       0111233567789999999 2222 23335999888765

>PRK03001 M48 family peptidase; Provisional

Probab=99.55  E-value=4.6e-14  Score=137.22  Aligned_cols=114  Identities=17%  Similarity=0.162  Sum_probs=80.0

Q ss_pred             eEEEEEeCCCCcEeeeCC----CeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHH-----H
Q 016945          264 WEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLIL-----Y  334 (380)
Q Consensus       264 w~v~Vv~s~~~NAfalPg----G~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~~~~~~~~il~~il-----~  334 (380)
                      -+++|++++.+|||+++.    +.|+|++||++.+ |+|||++|||||+||+.++|....+..+....++..+.     .
T Consensus        85 p~v~v~~~~~~NAfa~G~~~~~~~Ivvt~gLl~~l-~~~El~aVlAHElgHi~~~h~~~~~~~~~~~~~~~~~~~~~~~~  163 (283)
T PRK03001         85 PKVYLINEDQPNAFATGRNPEHAAVAATTGILRVL-SEREIRGVMAHELAHVKHRDILISTISATMAGAISALANFAMFF  163 (283)
T ss_pred             CeEEEecCCCcceEEecCCCCCeEEEecHHHHhhC-CHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            379999999999999964    3699999999988 99999999999999999999988765543333322211     0


Q ss_pred             hc-cc--h--h-H-------HHHHHHHhhhCCCchHHHH-HHH-HHHCCCChHhhhhcc
Q 016945          335 QF-VM--P--D-V-------VNTMSTLFLRLPFSRKCVS-LFI-LSNSFWNLWACLLVF  378 (380)
Q Consensus       335 ~~-~~--~--d-~-------~~~~~~l~~~lpySR~~E~-l~~-m~rAGYnP~a~~~~f  378 (380)
                      +. ..  .  + .       ...+...++.+-|||++|. .+- -.+.++||.++++++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SR~~E~~AD~~a~~l~~~p~~l~~AL  222 (283)
T PRK03001        164 GGRDENGRPVNPIAGIAVAILAPLAASLIQMAISRAREFEADRGGARISGDPQALASAL  222 (283)
T ss_pred             cCCCccccccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHhCCHHHHHHHH
Confidence            10 00  0  1 1       0111233456789999999 332 345578999988765

>PRK03072 heat shock protein HtpX; Provisional

Probab=99.52  E-value=9.8e-14  Score=135.69  Aligned_cols=134  Identities=13%  Similarity=0.148  Sum_probs=86.7

Q ss_pred             chHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCcEeeeC---C-CeEEEcHhHHhcCCCHHHHHHHHHHHHHHH
Q 016945          236 DDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLP---G-GKIVVFTGLLEHFRTDAEIATIIGHEVAHA  311 (380)
Q Consensus       236 ~D~~~~~~~~~g~~~~~~~~~s~~~~~~w~v~Vv~s~~~NAfalP---g-G~I~V~tGLL~~~~nddELAaVLaHEiaHv  311 (380)
                      +||++.+.++.      ++...+.+  ..+++|++++.+|||++.   + +.|+|++||++.+ |+|||++|||||+||+
T Consensus        68 ~~p~L~~~v~~------la~~~g~p--~p~vyv~~~~~~NAFa~G~~~~~~~v~vt~gLl~~l-~~~El~aVlAHElgHi  138 (288)
T PRK03072         68 QAPAMYRIVRE------LSTAARQP--MPRLYISPTAAPNAFATGRNPRNAAVCCTEGILQIL-NERELRGVLGHELSHV  138 (288)
T ss_pred             hhHHHHHHHHH------HHHHcCCC--CCCEEEecCCCCceEEecCCCCCcEEEecHHHHHhC-CHHHHHHHHHHHHHHH
Confidence            45666665542      12222232  347999999999999984   2 3599999999999 9999999999999999


Q ss_pred             hhhcHHHHHHHHHHHHHHHHHH------Hhccc------hhHH--------HHHHHHhhhCCCchHHHH-HH-HHHHCCC
Q 016945          312 VARHAAEGITKNLWFAILQLIL------YQFVM------PDVV--------NTMSTLFLRLPFSRKCVS-LF-ILSNSFW  369 (380)
Q Consensus       312 ~~rH~~e~~~~~~~~~il~~il------~~~~~------~d~~--------~~~~~l~~~lpySR~~E~-l~-~m~rAGY  369 (380)
                      ..+|.........+..++..+.      ..+..      +...        ..+...++.+.|||.+|. .+ +-++.+.
T Consensus       139 ~~~d~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SR~rE~~AD~~A~~l~~  218 (288)
T PRK03072        139 YNRDILISSVAGALASVITYLANMAMFAGMFGGRRDNDGPNPLALLLVSLLGPIAATVIQLAISRSREYQADESGAELTG  218 (288)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHhC
Confidence            9999988765543332222110      10000      1111        111233456789999999 32 2334457


Q ss_pred             ChHhhhhcc
Q 016945          370 NLWACLLVF  378 (380)
Q Consensus       370 nP~a~~~~f  378 (380)
                      ||.+++.++
T Consensus       219 ~p~~La~AL  227 (288)
T PRK03072        219 DPLALASAL  227 (288)
T ss_pred             CHHHHHHHH
Confidence            999988765

>PRK04897 heat shock protein HtpX; Provisional

Probab=99.49  E-value=2.7e-13  Score=133.07  Aligned_cols=114  Identities=19%  Similarity=0.242  Sum_probs=78.3

Q ss_pred             eEEEEEeCCCCcEeeeC----CCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH---H---
Q 016945          264 WEVLVVNEPVINAFCLP----GGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLI---L---  333 (380)
Q Consensus       264 w~v~Vv~s~~~NAfalP----gG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~~~~~~~~il~~i---l---  333 (380)
                      -++++++++.+|||+++    ++.|+|++||++.+ |+|||++|||||+||+.++|.........+..++..+   +   
T Consensus        98 p~v~v~~~~~~NAfa~G~~~~~~~v~vt~gLl~~l-~~~El~aVlAHElgHi~~~d~~~~~~~~~~~~~~~~l~~~~~~~  176 (298)
T PRK04897         98 PRVFIIDDPSPNAFATGSSPKNAAVAVTTGLLAIM-NREELEGVIGHEISHIRNYDIRLSTIAVALASAITLLSDIAGRM  176 (298)
T ss_pred             CcEEEecCCCCceEEeccCCCCcEEEeehHHHhhC-CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999996    35799999999999 9999999999999999999997765443322221111   0   


Q ss_pred             --Hhcc-c----hh------H----H-------HHHHHHhhhCCCchHHHH-H-HHHHHCCCChHhhhhcc
Q 016945          334 --YQFV-M----PD------V----V-------NTMSTLFLRLPFSRKCVS-L-FILSNSFWNLWACLLVF  378 (380)
Q Consensus       334 --~~~~-~----~d------~----~-------~~~~~l~~~lpySR~~E~-l-~~m~rAGYnP~a~~~~f  378 (380)
                        .... .    .+      +    .       ..+...++.+.+||.+|. . ..-.+.++||.+++..+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ll~~~~SR~rE~~AD~~A~~lt~~p~~La~AL  247 (298)
T PRK04897        177 MWWGGGSRRRDDDRDGGGLQIILLIVSLLLLILAPLAATLIQLAISRQREYLADASSVELTRNPQGLISAL  247 (298)
T ss_pred             HHhcccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence              0000 0    00      0    0       011223356789999999 2 23555668888877654

>PRK05457 heat shock protein HtpX; Provisional

Probab=99.40  E-value=2.7e-12  Score=125.53  Aligned_cols=57  Identities=28%  Similarity=0.438  Sum_probs=50.9

Q ss_pred             CeEEEEEeCCCCcEeeeCC----CeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHH
Q 016945          263 NWEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGI  320 (380)
Q Consensus       263 ~w~v~Vv~s~~~NAfalPg----G~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~  320 (380)
                      .-+++|++++.+|||+++.    +.|+|++||++.+ |+|||++|||||+||+.++|.....
T Consensus        94 ~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~L-~~~El~aVlAHElgHi~~~d~~~~~  154 (284)
T PRK05457         94 MPEVAIYHSPEINAFATGASKNNSLVAVSTGLLQNM-SRDEVEAVLAHEISHIANGDMVTMT  154 (284)
T ss_pred             CCCEEEEeCCCceEEEecCCCCCeEEEeehHHhhhC-CHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            3468999999999999973    4699999999999 9999999999999999999987753

>PRK02391 heat shock protein HtpX; Provisional

Probab=99.39  E-value=3.2e-12  Score=125.72  Aligned_cols=59  Identities=27%  Similarity=0.381  Sum_probs=52.0

Q ss_pred             eEEEEEeCCCCcEeeeC----CCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHHHHH
Q 016945          264 WEVLVVNEPVINAFCLP----GGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKN  323 (380)
Q Consensus       264 w~v~Vv~s~~~NAfalP----gG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~~~~  323 (380)
                      -++++++++.+|||+++    ++.|+|++||++.+ |+|||++|||||+||+.++|......-.
T Consensus        94 p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~L-~~~El~aVlaHElgHi~~~di~~~~i~~  156 (296)
T PRK02391         94 PRVAVADSDVPNAFATGRSPKNAVVCVTTGLMRRL-DPDELEAVLAHELSHVKNRDVAVMTIAS  156 (296)
T ss_pred             CcEEEEeCCCCceEEecCCCCCcEEEecHHHHhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            37999999999999995    34699999999999 8999999999999999999988765443

>PRK01265 heat shock protein HtpX; Provisional

Probab=99.36  E-value=5.5e-12  Score=125.60  Aligned_cols=60  Identities=27%  Similarity=0.377  Sum_probs=53.6

Q ss_pred             CeEEEEEeCCCCcEeeeC----CCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHHHHH
Q 016945          263 NWEVLVVNEPVINAFCLP----GGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKN  323 (380)
Q Consensus       263 ~w~v~Vv~s~~~NAfalP----gG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~~~~  323 (380)
                      ..++++++++.+||||+.    ++.|+|++||++.+ |+|||++|||||+||+.++|....+.-+
T Consensus       100 ~p~vyv~~~~~~NAfa~G~~~~~~~Ivvt~gLl~~l-~~~El~aVlAHElgHik~~d~~~~~~~~  163 (324)
T PRK01265        100 VPKVYIADVPFPNAFAYGSPIAGKRIAITLPLLKIL-NRDEIKAVAGHELGHLKHRDVELLMAIG  163 (324)
T ss_pred             CCeEEEecCCCCCeEEeccCCCCCEEEEehHHHhhC-CHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            358999999999999963    57899999999999 9999999999999999999998876544

>KOG2719 consensus Metalloprotease [General function prediction only]

Probab=98.13  E-value=1.7e-05  Score=81.68  Aligned_cols=107  Identities=20%  Similarity=0.283  Sum_probs=72.6

Q ss_pred             EEEEEeC----CCCcEeeeC---CCeEEEcHhHHh-cC-CCHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHh
Q 016945          265 EVLVVNE----PVINAFCLP---GGKIVVFTGLLE-HF-RTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQ  335 (380)
Q Consensus       265 ~v~Vv~s----~~~NAfalP---gG~I~V~tGLL~-~~-~nddELAaVLaHEiaHv~~rH~~e~~~~~~~~~il~~il~~  335 (380)
                      .++|++.    .-.||+-.+   .-.|++|.-|+. .. -|+||+++|+|||+||...+|..++..-..+..++...+.+
T Consensus       236 k~~vi~~s~rs~hsNAyfyG~~~~KRIvIyDtLl~~~~~~~~eel~AVl~HELGHW~~~H~~K~~ii~~~~l~l~~llF~  315 (428)
T KOG2719|consen  236 KYRVIDGSKRSSHSNAYFYGLCKNKRIVIYDTLLLEEEHLNNEELVAVLAHELGHWKLNHVLKNIIIMQIHLFLEFLLFG  315 (428)
T ss_pred             EEEEEecCCCCCCCCeeeeeccccceEEEehhhhhhhhccccHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            4677772    248999986   359999999993 33 38999999999999999999999998876544333222211


Q ss_pred             -----------ccc----hhHHH-------------HHHHHhhhCCCchHHHH--HHHHHHCCCChH
Q 016945          336 -----------FVM----PDVVN-------------TMSTLFLRLPFSRKCVS--LFILSNSFWNLW  372 (380)
Q Consensus       336 -----------~~~----~d~~~-------------~~~~l~~~lpySR~~E~--l~~m~rAGYnP~  372 (380)
                                 ++.    |..++             .+.+ ....-.||..|.  =.+..+-||+-.
T Consensus       316 ~~~~~~~ly~a~Gf~~~~P~~ig~livf~~~l~py~~l~~-~~~n~~sR~fEyqAD~fA~klGYg~~  381 (428)
T KOG2719|consen  316 FLYRNPKLYAAFGFIDEQPSLIGFLIVFQFVLAPYRALLN-FLMNLISRRFEYQADAFAKKLGYGKD  381 (428)
T ss_pred             HHHcCcchheeecCCCCCcchhHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCchh
Confidence                       111    12222             1122 345678999999  456677888754

>PF13203 DUF2201_N: Putative metallopeptidase domain

Probab=96.74  E-value=0.0026  Score=62.07  Aligned_cols=55  Identities=22%  Similarity=0.241  Sum_probs=48.9

Q ss_pred             EEEEeCCCCcEeeeCCCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHHH
Q 016945          266 VLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGIT  321 (380)
Q Consensus       266 v~Vv~s~~~NAfalPgG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~~  321 (380)
                      +.++.++.+..+++.|..|+++-..+..+ +.+|+.+||+||+-|++.+|..+...
T Consensus        27 l~~~~~~~~~t~~tDg~~l~~nP~~~~~l-~~~~~~~~l~HevlH~~~~H~~r~~~   81 (292)
T PF13203_consen   27 LPPVEDDGIPTAATDGRRLYYNPEFLESL-SPEERVGLLLHEVLHCLLRHPWRRGG   81 (292)
T ss_pred             CeeeeCCCCceeeEcCcEEEECcHHHhcC-CHHHHHHHHHHHHHHHHccchhhhcc
Confidence            34445777889999999999999999888 89999999999999999999988877

>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.47  E-value=0.0074  Score=58.87  Aligned_cols=59  Identities=24%  Similarity=0.294  Sum_probs=47.2

Q ss_pred             EEEEEeCCC-CcEeeeC--CCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 016945          265 EVLVVNEPV-INAFCLP--GGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNL  324 (380)
Q Consensus       265 ~v~Vv~s~~-~NAfalP--gG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~~~~~  324 (380)
                      .+.+..++. ...|+++  -.+|++..++++.+ +++|+..||.||++|+..+|....+-...
T Consensus       159 ~~~i~~s~~i~sP~~~G~~~p~I~lP~~~~~~~-~~~el~~il~HEl~Hikr~D~~~~~l~~l  220 (299)
T PF05569_consen  159 PIRIRVSSGISSPFVFGFLRPVIVLPESLLEDL-SEEELRAILLHELAHIKRRDLLWKLLAEL  220 (299)
T ss_pred             ceEEEEcCCCCCCeeecCcceEEEecCcccccc-CHHHHHHHHHHHHHHHHCCChHHHHHHHH
Confidence            345555554 4667763  27999999999888 99999999999999999999988766554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.

>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function

Probab=95.21  E-value=0.059  Score=43.84  Aligned_cols=51  Identities=18%  Similarity=0.321  Sum_probs=33.7

Q ss_pred             eEEEEEeCCC--CcEeeeC---CCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHH
Q 016945          264 WEVLVVNEPV--INAFCLP---GGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEG  319 (380)
Q Consensus       264 w~v~Vv~s~~--~NAfalP---gG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~  319 (380)
                      .+|...+...  ...++.+   .+.|+|++.     .++.+-..+|+||+||+..+|....
T Consensus         6 i~v~~~~~~~~~~~~~~~~~~~~~~I~in~~-----~~~~~~~f~laHELgH~~~~~~~~~   61 (122)
T PF06114_consen    6 IDVVYTDLGPKDLGGFSIPKENNPIIFINSN-----LSPERQRFTLAHELGHILLHHGDET   61 (122)
T ss_dssp             -EEEEE--TT--EEEETT----TTEEEEESS-----S-HHHHHHHHHHHHHHHHHHH-HHH
T ss_pred             EEEEEEcCCCCCcCEEEEecCcCCEEEECCC-----CCHHHHHHHHHHHHHHHHhhhcccc
Confidence            3455555433  3344443   578888887     3788999999999999999999865

A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.

>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases

Probab=94.56  E-value=0.036  Score=55.10  Aligned_cols=44  Identities=20%  Similarity=0.326  Sum_probs=34.2

Q ss_pred             CCcEeeeC-CCeEEEcHhHHhcCC------CHHHHHHHHHHHHHHHhhhcH
Q 016945          273 VINAFCLP-GGKIVVFTGLLEHFR------TDAEIATIIGHEVAHAVARHA  316 (380)
Q Consensus       273 ~~NAfalP-gG~I~V~tGLL~~~~------nddELAaVLaHEiaHv~~rH~  316 (380)
                      ..|||=.| +.+||+-..+++.+.      .+-..+.|||||.||.++...
T Consensus       136 ~~gpFYCp~D~tIYlD~~f~~~L~~~~ga~G~~a~ayVlAHEyGHHVQ~l~  186 (292)
T PF04228_consen  136 ATGPFYCPADQTIYLDLSFFDELQQRFGASGDFAQAYVLAHEYGHHVQNLL  186 (292)
T ss_pred             CCCCEeCCCCCEEEechHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHh
Confidence            45777666 579999998876553      244568899999999999886

The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.

>PF13699 DUF4157: Domain of unknown function (DUF4157)

Probab=92.52  E-value=0.086  Score=42.62  Aligned_cols=39  Identities=28%  Similarity=0.391  Sum_probs=28.3

Q ss_pred             CCcEeeeCCCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhh
Q 016945          273 VINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVAR  314 (380)
Q Consensus       273 ~~NAfalPgG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~r  314 (380)
                      ...||+. |+.|++-.|=...-  ..+=..+|+||++|+++.
T Consensus        37 ~A~A~T~-G~~I~f~~g~~~~~--s~~~~~llaHEl~Hv~Qq   75 (79)
T PF13699_consen   37 GARAFTV-GNDIYFAPGKYNPD--SPEGRALLAHELAHVVQQ   75 (79)
T ss_pred             CCeEEEE-CCEEEEcCCCcCCC--CCCcchhHhHHHHHHHhh
Confidence            4678887 78999977765422  223457899999999864

>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT)

Probab=90.97  E-value=0.58  Score=41.15  Aligned_cols=33  Identities=30%  Similarity=0.379  Sum_probs=29.8

Q ss_pred             eEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcH
Q 016945          283 KIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHA  316 (380)
Q Consensus       283 ~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~  316 (380)
                      .|.++.-+++. .+++++..+|.|||+|+...+.
T Consensus        44 ~I~ls~~~~~~-~~~~~~~~tL~HEm~H~~~~~~   76 (157)
T PF10263_consen   44 EIRLSPKLLDR-NPEEELIDTLLHEMAHAAAYVF   76 (157)
T ss_pred             EEEECHHHHHh-hHHHHHHHHHHHHHHHHHhhhc
Confidence            79999999997 4899999999999999998655

SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.

>smart00731 SprT SprT homologues

Probab=90.89  E-value=0.32  Score=43.10  Aligned_cols=33  Identities=21%  Similarity=0.234  Sum_probs=29.6

Q ss_pred             CCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhh
Q 016945          281 GGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVAR  314 (380)
Q Consensus       281 gG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~r  314 (380)
                      .+.|.++.-|++.. .+++|..||.|||+|....
T Consensus        41 ~~~I~ln~~l~~~~-~~~~l~~~l~HEm~H~~~~   73 (146)
T smart00731       41 SAEIRLNPKLLTEN-GRDRLRETLLHELCHAALY   73 (146)
T ss_pred             CCEEEeCHHHHhhc-cHHHHHhhHHHHHHHHHHH
Confidence            68999999998866 7899999999999999985

Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.

>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms]

Probab=89.17  E-value=1.1  Score=45.34  Aligned_cols=47  Identities=30%  Similarity=0.313  Sum_probs=40.4

Q ss_pred             CcEeeeCCCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHHH
Q 016945          274 INAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGIT  321 (380)
Q Consensus       274 ~NAfalPgG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~~  321 (380)
                      |=-|-++-..|++-+.+.+.+ +++|+..|++||.+|+..++.....-
T Consensus       165 P~v~gl~kp~IvlP~d~~~r~-~~ee~~yIilHEl~Hlk~gD~i~n~i  211 (337)
T COG4219         165 PMVFGLVKPCIVLPADFVERL-TDEELKYIILHELSHLKRGDAIINLI  211 (337)
T ss_pred             ceeeccCcceEEccHHHHhhc-CHHhhhhhHhHHHhhhhcccHHHHHH
Confidence            445556668999999999999 99999999999999999999876543

>PRK04351 hypothetical protein; Provisional

Probab=88.98  E-value=0.64  Score=41.98  Aligned_cols=36  Identities=28%  Similarity=0.369  Sum_probs=29.8

Q ss_pred             EeeeCCCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHh
Q 016945          276 AFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAV  312 (380)
Q Consensus       276 AfalPgG~I~V~tGLL~~~~nddELAaVLaHEiaHv~  312 (380)
                      ++-+....|-++.-+++.. .+++|..||.|||+|..
T Consensus        38 ~~~l~~~~I~lnp~ll~~~-~~~~l~~vv~HElcH~~   73 (149)
T PRK04351         38 RYLLKDHHIEFNPKMLEEY-GLEELIGIIKHELCHYH   73 (149)
T ss_pred             eeecCCCeEEeCHHHHhhc-cHHHHHhhHHHHHHHHH
Confidence            3335567899999998865 79999999999999974

>COG2321 Predicted metalloprotease [General function prediction only]

Probab=88.56  E-value=0.37  Score=47.72  Aligned_cols=40  Identities=28%  Similarity=0.443  Sum_probs=32.1

Q ss_pred             EeeeCC-CeEEEcHhHHhcCC------CHHHHHHHHHHHHHHHhhhc
Q 016945          276 AFCLPG-GKIVVFTGLLEHFR------TDAEIATIIGHEVAHAVARH  315 (380)
Q Consensus       276 AfalPg-G~I~V~tGLL~~~~------nddELAaVLaHEiaHv~~rH  315 (380)
                      -|-.|+ .++|+...+++.|+      .|=.-|.|+|||++|++++=
T Consensus       136 PFYCP~D~kvYlDlsFf~~m~~~fga~GdfAqaYViAHEVGHHVQnl  182 (295)
T COG2321         136 PFYCPADTKVYLDLSFFDEMKTKFGASGDFAQAYVIAHEVGHHVQNL  182 (295)
T ss_pred             CeecCCCceEEEehhHHHHHHHHhcCCccHHHHHHHHhhhhHHHHHH
Confidence            345564 89999999999875      45667899999999998763

>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function

Probab=87.48  E-value=1.1  Score=41.58  Aligned_cols=34  Identities=26%  Similarity=0.364  Sum_probs=27.2

Q ss_pred             CeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHH
Q 016945          282 GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAA  317 (380)
Q Consensus       282 G~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~  317 (380)
                      |+|+++-  +..-.+.++|.++||||.-|+..-...
T Consensus        49 ~~i~l~~--~~~~~~~~~l~~~iaHE~hH~~r~~~~   82 (195)
T PF10026_consen   49 GYIFLFL--LPNDYSLEELPALIAHEYHHNCRYEQI   82 (195)
T ss_pred             CEEEEEe--cCCcccHHHHHHHHHHHHHHHHHHhcc
Confidence            6888876  555558999999999999999875544

>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57

Probab=87.39  E-value=0.48  Score=45.23  Aligned_cols=35  Identities=31%  Similarity=0.459  Sum_probs=26.4

Q ss_pred             CCCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHh-hhcHH
Q 016945          280 PGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAV-ARHAA  317 (380)
Q Consensus       280 PgG~I~V~tGLL~~~~nddELAaVLaHEiaHv~-~rH~~  317 (380)
                      |++.|.| .|+-.  .+-+.++.||.|||||.+ .||..
T Consensus       116 P~~~I~I-~~~~~--~~~~~~~hvi~HEiGH~IGfRHTD  151 (211)
T PF12388_consen  116 PYKFIQI-YGLSN--YSVNVIEHVITHEIGHCIGFRHTD  151 (211)
T ss_pred             CCceEEE-EecCC--CchhHHHHHHHHHhhhhccccccC
Confidence            4578888 45522  267789999999999988 57865

The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].

>COG1451 Predicted metal-dependent hydrolase [General function prediction only]

Probab=86.37  E-value=1.1  Score=42.96  Aligned_cols=49  Identities=20%  Similarity=0.230  Sum_probs=37.8

Q ss_pred             eCCCCcEeeeCCCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHH
Q 016945          270 NEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGI  320 (380)
Q Consensus       270 ~s~~~NAfalPgG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~  320 (380)
                      +-...=+-|.+.|.|.+..-|..  ..++.+..|+.||++|....++..+.
T Consensus       147 ~~k~~WGScs~~~~i~~~~~l~~--~p~~~i~YVvvHELaHLke~nHs~~F  195 (223)
T COG1451         147 NMKRRWGSCSKAGEIRFNWRLVM--APEEVIDYVVVHELAHLKEKNHSKRF  195 (223)
T ss_pred             eccceeeeecCCCcEEeehhhhc--CCHHHHHHHHHHHHHHHhhhhccHHH
Confidence            34445577888887877776655  48999999999999999988766543

>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens []

Probab=86.19  E-value=1.8  Score=40.98  Aligned_cols=35  Identities=17%  Similarity=0.273  Sum_probs=30.5

Q ss_pred             CeEEEcHhHHhcCCC----HHHHHHHHHHHHHHHhhhcH
Q 016945          282 GKIVVFTGLLEHFRT----DAEIATIIGHEVAHAVARHA  316 (380)
Q Consensus       282 G~I~V~tGLL~~~~n----ddELAaVLaHEiaHv~~rH~  316 (380)
                      ..|.++...|....+    .+|+.+||-|||.|+.+.-.
T Consensus        74 ~~I~~S~~~i~~~~~~~~~~~Ei~Gvl~HE~~H~~Q~~~  112 (205)
T PF04450_consen   74 KEIHFSARYIAKYPADGDVRDEIIGVLYHEMVHCWQWDG  112 (205)
T ss_pred             cEEEEeHHHHhhcccccchHHHHHHHHHHHHHHHhhcCC
Confidence            799999999998753    36999999999999998665

>PF13485 Peptidase_MA_2: Peptidase MA superfamily

Probab=83.63  E-value=1.7  Score=35.42  Aligned_cols=24  Identities=17%  Similarity=0.227  Sum_probs=20.4

Q ss_pred             CCHHHHHHHHHHHHHHHhhhcHHH
Q 016945          295 RTDAEIATIIGHEVAHAVARHAAE  318 (380)
Q Consensus       295 ~nddELAaVLaHEiaHv~~rH~~e  318 (380)
                      .+++.+..||+||++|........
T Consensus        20 ~~~~~~~~~l~HE~~H~~~~~~~~   43 (128)
T PF13485_consen   20 SDEDWLDRVLAHELAHQWFGNYFG   43 (128)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcC
Confidence            588889999999999999777653

>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori

Probab=81.61  E-value=1.5  Score=39.97  Aligned_cols=53  Identities=15%  Similarity=0.178  Sum_probs=38.8

Q ss_pred             EEEEEeCCCCcEeeeCCCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHH
Q 016945          265 EVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEG  319 (380)
Q Consensus       265 ~v~Vv~s~~~NAfalPgG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~  319 (380)
                      ++.|-+...-=.-|...|.|-++.-|+.  -.++-+..|+.||++|....++...
T Consensus       131 ~i~ir~~ksrWGsc~~~~~I~ln~~L~~--~P~~~idYVvvHEL~Hl~~~nHs~~  183 (205)
T PF01863_consen  131 KIKIRDMKSRWGSCSSKGNITLNWRLVM--APPEVIDYVVVHELCHLRHPNHSKR  183 (205)
T ss_pred             eEEEeehhhccccCCCCCcEEeeccccc--CCccHHHHHHHHHHHHhccCCCCHH
Confidence            3445444444555755799999998887  3888899999999999976555443

The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	380
3c37_A	253	Peptidase, M48 family; Q74D82, GSR143A, structural	6e-30
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
3cqb_A	107	Probable protease HTPX homolog; heat shock protein	7e-04

>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca} Length = 253

 Score =  114 bits (288), Expect = 6e-30
 Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 3/107 (2%)

Query: 254 SATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVA 313
            + +     ++   VV +  +NAF +PGG++ V TGLL+    + E+A ++ HE+ HAVA
Sbjct: 54  LSGARAVEFDYVFKVVKDDSVNAFAIPGGRVYVHTGLLKAADNETELAGVLAHEINHAVA 113

Query: 314 RHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLF---LRLPFSRK 357
           RH    +T+   ++++  ++       +      LF     + +SR+
Sbjct: 114 RHGTRQMTQEYGYSLVLSLVLGDNPNMLAQLAGQLFGKAGMMSYSRE 160

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 2e-11
 Identities = 54/402 (13%), Positives = 104/402 (25%), Gaps = 127/402 (31%)

Query: 8   KAALDAFRNLSSKAVPKSPVQES--CSRVY-------SNGSANSAKFSSGF--YSYSCIS 56
           K   D  +++ SK      +      S          S       KF       +Y  + 
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95

Query: 57  QRLRNSYCNPNFNTAKRYYYVDRYH------VQHFRPRGP-----RKWLQNPRTVFIVVV 105
             ++     P+  T       DR +       ++   R       R+ L   R    V++
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 106 IGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDS 165
            G                                         +  +  GK        +
Sbjct: 156 DG-----------------------------------------VLGS--GK--------T 164

Query: 166 VRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTE 225
                +       +Q  +  +  W ++   ++    +       + L+ L    +   T 
Sbjct: 165 WVALDVCLS--YKVQCKMDFKIFWLNLKNCNSPETVL-------EMLQKLLYQIDPNWTS 215

Query: 226 GKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVL--VVNEPVINAF---CLP 280
              H  +  L    +Q   ++     L  +  + + L   VL  V N    NAF   C  
Sbjct: 216 RSDHSSNIKLRIHSIQAELRR-----LLKSKPYENCL--LVLLNVQNAKAWNAFNLSC-- 266

Query: 281 GGKIVVFTGLLEHFRTDAEIATII-GHEVAHAVARHAAEGITKNLWFAILQLILYQFVMP 339
             KI++ T      R   ++   +      H    H +  +T +   ++L   L      
Sbjct: 267 --KILLTT------R-FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL------ 311

Query: 340 DVVNTMSTLFLRLPFSRKCVSLFILS---------NSFWNLW 372
                       LP      +   LS          + W+ W
Sbjct: 312 ------DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633} Length = 107

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 9/52 (17%)

Query: 265 EVLVVNEPVINAFCLPGGK------IVVFTGLLEHFRTDAEIATIIGHEVAH 310
            V + +   INAF    G       + V TGLL +   D E   ++ HEV+H
Sbjct: 45  TVAIYDSADINAFAT--GAKRDDSLVAVSTGLLHNMTRD-EAEAVLAHEVSH 93

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	380
3c37_A	253	Peptidase, M48 family; Q74D82, GSR143A, structural	99.98
3cqb_A	107	Probable protease HTPX homolog; heat shock protein	99.56
4aw6_A	482	CAAX prenyl protease 1 homolog; hydrolase, M48 pep	99.05
3dte_A	301	IRRE protein; radiotolerance, gene regulation, met	90.73

>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}

Probab=99.98  E-value=4.6e-32  Score=257.06  Aligned_cols=176  Identities=22%  Similarity=0.347  Sum_probs=131.8

Q ss_pred             CCCccchhhcCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCChh-hHHHHHHHHHHHHHHHhcccccccccccCCCCcccc
Q 016945          122 VPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPD-SVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETD  200 (380)
Q Consensus       122 vP~TgR~rfills~~~E~~lg~~~y~qi~~~~~~~iLP~~hp~-s~rVr~Ia~rIi~a~~~~l~~e~~~~~~gy~~~~~~  200 (380)
                      +|.|||+|++++|+++|.++|++.++++.++++    |..+|. ..+|++|++++...+                     
T Consensus         3 ~~~tgr~~~~~~s~~~e~~lg~~~~~~~~~~~~----~~~d~~l~~~l~~l~~~l~~~~---------------------   57 (253)
T 3c37_A            3 TSMTDIKGFNMISIEQEKELGNKFAVEIEKQQQ----PVNDPEVQRYVDKVGKRLLSGA---------------------   57 (253)
T ss_dssp             ------CCCCCCCHHHHHHHHHHHHHHHHTTCC----BCCCHHHHHHHHHHHHHHHHTS---------------------
T ss_pred             cCCCCchhhccCCHHHHHHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHhC---------------------
Confidence            467999999999999999999999999988764    344665 668888888876421                     


Q ss_pred             ccccchhhhhHHhhhhhccccccccCCccccccccchHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCcEeeeC
Q 016945          201 FVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLP  280 (380)
Q Consensus       201 ~~~~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g~~~~~~~~~s~~~~~~w~v~Vv~s~~~NAfalP  280 (380)
                                                                               ..++.+|+|+|++++.+||||+|
T Consensus        58 ---------------------------------------------------------~~~~~~~~v~v~~~~~~NAfa~~   80 (253)
T 3c37_A           58 ---------------------------------------------------------RAVEFDYVFKVVKDDSVNAFAIP   80 (253)
T ss_dssp             ---------------------------------------------------------SCCCSCCEEEEECCCSCCEEEET
T ss_pred             ---------------------------------------------------------CCCCCCeEEEEEeCCCCCeeEcC
Confidence                                                                     01356899999999999999999


Q ss_pred             CCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHhccchhH---HHHHHHHhhhCCCchH
Q 016945          281 GGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDV---VNTMSTLFLRLPFSRK  357 (380)
Q Consensus       281 gG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~~~~~~~~il~~il~~~~~~d~---~~~~~~l~~~lpySR~  357 (380)
                      ||+|+||+|||+.++|||||++||||||||+..+|..+++..+....++..++.+.....+   ...+...++.++|||+
T Consensus        81 gg~I~v~~gLl~~l~~~~ELaaVLaHElgH~~~~H~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~SR~  160 (253)
T 3c37_A           81 GGRVYVHTGLLKAADNETELAGVLAHEINHAVARHGTRQMTQEYGYSLVLSLVLGDNPNMLAQLAGQLFGKAGMMSYSRE  160 (253)
T ss_dssp             TTEEEEEHHHHHHCSSHHHHHHHHHHHHHHHHTTHHHHHHHHHHCHHHHHHHHHTCCH--HHHHHHHHHSSSCCCCCCHH
T ss_pred             CCeEEeeHHHHhhCCCHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhccccHH
Confidence            9999999999999999999999999999999999999998876511111111111000011   1112223457899999


Q ss_pred             HHH------HHHHHHCCCChHhhhhccc
Q 016945          358 CVS------LFILSNSFWNLWACLLVFV  379 (380)
Q Consensus       358 ~E~------l~~m~rAGYnP~a~~~~f~  379 (380)
                      +|.      +.+|.+|||||.+++.+|.
T Consensus       161 ~E~eAD~~a~~~~~~ag~~p~~l~~~l~  188 (253)
T 3c37_A          161 YENQADFLGVETMYKAGYNPNGLTSFFQ  188 (253)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            999      8999999999999998873

>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.56  E-value=1.3e-14  Score=120.99  Aligned_cols=53  Identities=30%  Similarity=0.418  Sum_probs=49.6

Q ss_pred             eEEEEEeCCCCcEeeeCC----CeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHH
Q 016945          264 WEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAA  317 (380)
Q Consensus       264 w~v~Vv~s~~~NAfalPg----G~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~  317 (380)
                      ++++|++++.+||||+|+    +.|+|++|||+.+ |+|||++|||||+||+..+|..
T Consensus        44 ~~v~v~~~~~~NAf~~g~~~~~~~i~v~~gLl~~l-~~~El~aVlaHElgH~~~~h~~  100 (107)
T 3cqb_A           44 PTVAIYDSADINAFATGAKRDDSLVAVSTGLLHNM-TRDEAEAVLAHEVSHIANGDMV  100 (107)
T ss_dssp             CEEEEECCSSEEEEEECCC--CCEEEEEHHHHHHS-CHHHHHHHHHHHHHHHHTTCEE
T ss_pred             CeEEEEECCCcCEEEEecCCCCCEEEEcHHHHhhC-CHHHHHHHHHHHHHHHHCCCHH
Confidence            699999999999999984    5699999999999 9999999999999999999974

>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A

Probab=99.05  E-value=7.5e-10  Score=114.16  Aligned_cols=113  Identities=22%  Similarity=0.277  Sum_probs=75.8

Q ss_pred             eEEEEEe----CCCCcEeeeC---CCeEEEcHhHHhc-------------------------------------CCCHHH
Q 016945          264 WEVLVVN----EPVINAFCLP---GGKIVVFTGLLEH-------------------------------------FRTDAE  299 (380)
Q Consensus       264 w~v~Vv~----s~~~NAfalP---gG~I~V~tGLL~~-------------------------------------~~nddE  299 (380)
                      -+++|++    ++..|||+..   +..|++++.|++.                                     | |+||
T Consensus       250 ~~v~vv~gSkRs~~~NAy~~G~~~~krIVl~dtLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~E  328 (482)
T 4aw6_A          250 TKVYVVEGSKRSSHSNAYFYGFFKNKRIVLFDTLLEEYSVLNKDIQEDSGMEPRNEEEGNSEEIKAKVKNKKQGC-KNEE  328 (482)
T ss_dssp             EEEEEECGGGTBSCCCEEEEESSSCEEEEEEHHHHC------------------------------------CCC-CHHH
T ss_pred             CcEEEEeCCCCCCCCceEEEcCCCCcEEEEEchHHHhcccccccccccccccccccccccchhhcccchhhccCC-CHHH
Confidence            4899999    7789999985   3479999999987                                     5 8999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHH-----------hcc----chhHHHHH------------HHHhhhC
Q 016945          300 IATIIGHEVAHAVARHAAEGITKNLWFAILQLILY-----------QFV----MPDVVNTM------------STLFLRL  352 (380)
Q Consensus       300 LAaVLaHEiaHv~~rH~~e~~~~~~~~~il~~il~-----------~~~----~~d~~~~~------------~~l~~~l  352 (380)
                      |++|||||+||+.++|....+.-+.+..++...+.           .++    .|.+.+.+            ...++.+
T Consensus       329 l~aVlaHElgH~~~~~~~~~~~~~~i~~~~~~~l~~~l~~~~~l~~~~G~~~~~p~~~~~llv~~~i~~P~~~l~~~i~~  408 (482)
T 4aw6_A          329 VLAVLGHELGHWKLGHTVKNIIISQMNSFLCFFLFAVLIGRKELFAAFGFYDSQPTLIGLLIIFQFIFSPYNEVLSFCLT  408 (482)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHTTCCSCCCHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcchhhHhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998876544332211110           011    11111110            1123567


Q ss_pred             CCchHHHH-H-HHHHHCCCChHhhhhcc
Q 016945          353 PFSRKCVS-L-FILSNSFWNLWACLLVF  378 (380)
Q Consensus       353 pySR~~E~-l-~~m~rAGYnP~a~~~~f  378 (380)
                      .|||++|. . .+-++-|+ |.+++.++
T Consensus       409 ~~SR~~E~eAD~~a~~lg~-p~~L~~AL  435 (482)
T 4aw6_A          409 VLSRRFEFQADAFAKKLGK-AKDLYSAL  435 (482)
T ss_dssp             HHHHHHHHHHHHHHHHTTT-HHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence            89999999 1 22223365 88888765

>3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase; 2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A

Probab=90.73  E-value=0.4  Score=46.48  Aligned_cols=49  Identities=12%  Similarity=0.139  Sum_probs=35.0

Q ss_pred             EEEEEeCCCCcEeeeCC-CeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHH
Q 016945          265 EVLVVNEPVINAFCLPG-GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAE  318 (380)
Q Consensus       265 ~v~Vv~s~~~NAfalPg-G~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e  318 (380)
                      .|...+-+....+..++ ..|+++..+     +++...+.||||+||++++|...
T Consensus        65 ~V~~~~L~~~~G~~~~~~~~I~LN~~~-----~~~rqrFTLAHELGHllLh~~~~  114 (301)
T 3dte_A           65 TLTFMPMGQRDGAYDPEHHVILINSQV-----RPERQRFTLAHEISHALLLGDDD  114 (301)
T ss_dssp             EEEEECCTTCCEEEETTTTEEEEETTS-----CHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             EEEEEcCCCCCEEEECCCcEEEEcCCC-----ChhhHHHHHHHHHHHHHhccccc
Confidence            33333333445555565 578888763     88999999999999999988654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	380
d1rm8a_	169	Matrix metalloproteinase-16 (MMP-16) {Human (Homo	80.68

>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Matrix metalloproteinase-16 (MMP-16)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.68  E-value=0.34  Score=38.65  Aligned_cols=18  Identities=28%  Similarity=0.543  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHh-hhcH
Q 016945          299 EIATIIGHEVAHAV-ARHA  316 (380)
Q Consensus       299 ELAaVLaHEiaHv~-~rH~  316 (380)
                      -+..|+.|||||++ +.|.
T Consensus       116 ~~~~v~~HEiGHaLGL~H~  134 (169)
T d1rm8a_         116 DLFLVAVHELGHALGLEHS  134 (169)
T ss_dssp             EHHHHHHHHHHHHHTCCCC
T ss_pred             hhhhhhhhhhhhhhcCCCC
Confidence            37899999999998 4554