Citrus Sinensis ID: 016952

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380
Protein Sequence
MKLKQLTMISSHSSSIVKSASASSTFPPSLHSLAPSSSSSSSSSCLPLQPKSRNFISLKPSAPFHGNSSVPLQKRNLSVVSASKSDDRDPSSSFQGGESFFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGLKRLALLEGLVDVYLLSICDVTFSFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTSKEQLTRRAA
Secondary Structure (PSIPRED)
cccccEEEEccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccEEccEEEEEEEccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEEccccccccHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccccccHHHHHHHHHHcccccccccccEEEcccccEEEEEEccccEEEEEccccEEEEcccEEEEEEEccccccccccHHHHHHHHcccccccccHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccHEEEEEEccccHHHHHccccccccccHHccccHHHHHccccccccccccccccEcccccccccccccccccccccEEccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEcccEEEEEcccccccHHHHHHHcccccccccccccccccccccccccccEEEEEEccHHHccHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHHccccccccccEEEEcccccEEEEccccccEEEEEccccEEEccccHHHHHHcccccccccccHHHHHHHHHccccccccHHHHHHHcHHHHcccccc
Coil and Loop (DISEMBL)
mklkqltmissHSSSIVksasasstfppslhslapsssssssssclplqpksrnfislkpsapfhgnssvplqkrnlsvvsasksddrdpsssfqggeSFFRTVLQSMEAVYLNRNPTAKAVLELVQSsgnnqicydhiafRTFGLKRLALLEGLVDVYLLSICDvtfsfhypdggsgvngplpRVFISELLVDQMSPQIQEIIRKYtetsgsgkKHAALASALgsltwgkplySEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNgfrlnseggvlkvspdglllqsstvadsfpfcfsdgvtesvpcsyIEFAErlvlpqyknlpeaevkefhrrdgfevgnadkiFESTSKEQLTRRAA
Flexible Loop (DISEMBL)
mklkqltmISSHSSSIVKSASASSTFPPSLHSLAPSSSSSSSSSCLPLQPKSRNFISLKPSApfhgnssvplqkRNLSVVSasksddrdpsssfqggESFFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGLKRLALLEGLVDVYLLSICDVTFSFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERlvlpqyknlpeaevkefhrrdgfevgnadkifestskeqltrraa
Low Complexity Region (SEG)
MKLKQLTMisshsssivksasassTFppslhslapsssssssssclplqpksRNFISLKPSAPFHGNSSVPLQKRNLSVVSASKSDDRDPSSSFQGGESFFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGLKRLALLEGLVDVYLLSICDVTFSFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTSKEQLTRRAA
Disordered region (IsUnstruct)
***************************************************************************************************FFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGLKRLALLEGLVDVYLLSICDVTFSFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTE*******HAALASALGSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHR***F**********************
Disordered Region (DISOPRED)
*******************ASA**TF************************************************************************SFFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGLKRLALLEGLVDVYLLSICDVTFSFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNS******VSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFE************
Disordered Region (DISEMBL)
************************************************QPKSRNFISLKPSAPFHGNSSVPLQKRNLS****************QGGESFFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGLKRLALLEGLVDVYLLSICDVTFSFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKY**********AALASALGSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFEST**********
Disordered Region (DISPRO)
*KLKQLTMISSHSSSIVKSASASSTFPPSLH*********SSSSCLPLQPKSRNFISLKPSAPFHGNSSVPLQKRNLSVVSASKSDDRDPSSSFQGGESFFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGLKRLALLEGLVDVYLLSICDVTFSFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTS*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLKQLTMISSHSSSIVKSASASSTFPPSLHSLAPSSSSSSSSSCLPLQPKSRNFISLKPSAPFHGNSSVPLQKRNLSVVSASKSDDRDPSSSFQGGESFFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGLKRLALLEGLVDVYLLSICDVTFSFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTSKEQLTRRAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
296086430	381	unnamed protein product [Vitis vinifera]	0.905	0.902	0.642	1e-126
225424904	418	PREDICTED: uncharacterized protein LOC10	0.905	0.822	0.644	1e-126
356500527	375	PREDICTED: uncharacterized protein LOC54	0.894	0.906	0.626	1e-121
357486611	450	hypothetical protein MTR_5g038460 [Medic	0.857	0.724	0.629	1e-119
357486607	372	hypothetical protein MTR_5g038460 [Medic	0.75	0.766	0.689	1e-117
297848990	371	hypothetical protein ARALYDRAFT_887913 [	0.915	0.938	0.598	1e-116
255558220	307	conserved hypothetical protein [Ricinus	0.752	0.931	0.698	1e-114
18390717	371	uncharacterized protein [Arabidopsis tha	0.915	0.938	0.588	1e-114
312282267	373	unnamed protein product [Thellungiella h	0.810	0.825	0.650	1e-113
449531822	372	PREDICTED: uncharacterized LOC101218869	0.786	0.803	0.669	1e-112

>gi|296086430|emb|CBI32019.3| unnamed protein product [Vitis vinifera]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/380 (64%), Positives = 277/380 (72%), Gaps = 36/380 (9%)

Query: 36  SSSSSSSSSCLPL------QPKSRNFISLK---------PSAPFHGNS---SVPLQKRNL 77
           +++ +S SS  PL       P+S  F+SL+         P++  H +S   SV L  R+L
Sbjct: 3   AAAVTSFSSIFPLYSTIRTTPRSSTFLSLRSLTSFPSPLPTSFPHLSSPGNSVSLLNRSL 62

Query: 78  SVVSASKSDDRDPSSSFQGGESFFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYD 137
              + S  +   P   FQG ESFFR VL SME VYLNRNPTAK+VLELV+S  N++ICYD
Sbjct: 63  CTATRSHMEPEPPVPPFQGAESFFRNVLGSMETVYLNRNPTAKSVLELVRSVDNDRICYD 122

Query: 138 HIAFRTFGLKRLALLEGLVDVYLLSICDVTFSFHYP-----------------DGGSGVN 180
           H+AFRTFG+    + + +   +L           +P                 D G+GV+
Sbjct: 123 HLAFRTFGVNGYGI-DSMAQFFLDFGYKPREELRFPAKKLRALWFSPPRISHTDTGTGVH 181

Query: 181 GPLPRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQL 240
           GPLPR+FISELLVDQMSP  QEIIRKYTE SGSG KHAALASA G LTW KPLYSEFQQL
Sbjct: 182 GPLPRIFISELLVDQMSPPAQEIIRKYTEISGSGNKHAALASAQGFLTWEKPLYSEFQQL 241

Query: 241 ARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPD 300
           ARESEYAAWTLVNGYAVNHVTIS H LKS L NI+ LNQFIE+NGF+LNSEGGVLKVSPD
Sbjct: 242 ARESEYAAWTLVNGYAVNHVTISTHQLKSHLRNIEMLNQFIEENGFKLNSEGGVLKVSPD 301

Query: 301 GLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEV 360
           GLLLQSSTVADS  F FSDGVTESVPCSYIEFAERLVLPQYKNLP+ EVKE+HRRDGFEV
Sbjct: 302 GLLLQSSTVADSVSFQFSDGVTESVPCSYIEFAERLVLPQYKNLPDKEVKEYHRRDGFEV 361

Query: 361 GNADKIFESTSKEQLTRRAA 380
           GNADKIFESTSK+QLTRRAA
Sbjct: 362 GNADKIFESTSKDQLTRRAA 381

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424904|ref|XP_002276462.1| PREDICTED: uncharacterized protein LOC100258620 [Vitis vinifera]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/380 (64%), Positives = 280/380 (73%), Gaps = 36/380 (9%)

Query: 36  SSSSSSSSSCLPL------QPKSRNFISLK---------PSAPFHGNS---SVPLQKRNL 77
           +++ +S SS  PL       P+S  F+SL+         P++  H +S   SV L  R+L
Sbjct: 40  AAAVTSFSSIFPLYSTIRTTPRSSTFLSLRSLTSFPSPLPTSFPHLSSPGNSVSLLNRSL 99

Query: 78  SVVSASKSDDRDPSSSFQGGESFFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYD 137
              + S  +   P   FQG ESFFR VL SME VYLNRNPTAK+VLELV+S  N++ICYD
Sbjct: 100 CTATRSHMEPEPPVPPFQGAESFFRNVLGSMETVYLNRNPTAKSVLELVRSVDNDRICYD 159

Query: 138 HIAFRTFGLKRLALLEGLVDVYL--------------LSICDVTFS---FHYPDGGSGVN 180
           H+AFRTFG+    + + +   +L                +  + FS     + D G+GV+
Sbjct: 160 HLAFRTFGVNGYGI-DSMAQFFLDFGYKPREELRFPAKKLRALWFSPPRISHTDTGTGVH 218

Query: 181 GPLPRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQL 240
           GPLPR+FISELLVDQMSP  QEIIRKYTE SGSG KHAALASA G LTW KPLYSEFQQL
Sbjct: 219 GPLPRIFISELLVDQMSPPAQEIIRKYTEISGSGNKHAALASAQGFLTWEKPLYSEFQQL 278

Query: 241 ARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPD 300
           ARESEYAAWTLVNGYAVNHVTIS H LKS L NI+ LNQFIE+NGF+LNSEGGVLKVSPD
Sbjct: 279 ARESEYAAWTLVNGYAVNHVTISTHQLKSHLRNIEMLNQFIEENGFKLNSEGGVLKVSPD 338

Query: 301 GLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEV 360
           GLLLQSSTVADS  F FSDGVTESVPCSYIEFAERLVLPQYKNLP+ EVKE+HRRDGFEV
Sbjct: 339 GLLLQSSTVADSVSFQFSDGVTESVPCSYIEFAERLVLPQYKNLPDKEVKEYHRRDGFEV 398

Query: 361 GNADKIFESTSKEQLTRRAA 380
           GNADKIFESTSK+QLTRRAA
Sbjct: 399 GNADKIFESTSKDQLTRRAA 418

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500527|ref|XP_003519083.1| PREDICTED: uncharacterized protein LOC547714 [Glycine max]

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/359 (62%), Positives = 265/359 (73%), Gaps = 19/359 (5%)

Query: 37  SSSSSSSSCLPLQPKSRNFISLK-PSAPFHGNSSVPLQKRNLSVVSASKSDDRDPSSSFQ 95
           S S ++++ LP +P   N + +K  S+P H   ++   +R L V   S S      SS Q
Sbjct: 15  SFSRTTATSLPSKPTFWNLVPMKQSSSPGHLALALDNPRRTLHVSCGSTSPHASQRSSIQ 74

Query: 96  GGESFFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGLKRLALLEGL 155
           GGE+FFR VL+SM++VYLNRN TAKA+L+LV S+ NN +CYDH+AFRTFG+     ++ +
Sbjct: 75  GGEAFFRGVLESMQSVYLNRNRTAKAILDLVHSAENNSLCYDHLAFRTFGVNGYG-IDSM 133

Query: 156 VDVYLLSICDVTFSFHYP-----------------DGGSGVNGPLPRVFISELLVDQMSP 198
              +L           +P                   GSG+NGPLPR+FISELLVDQMSP
Sbjct: 134 ASFFLDYGYTQREELRFPAKKLRALWFSPPADSLASNGSGINGPLPRIFISELLVDQMSP 193

Query: 199 QIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVN 258
           Q QEII+KYTE+S  G K+AALAS+LG LTW KPLYSEFQQLA ESEYAAWTLVNGYA+N
Sbjct: 194 QTQEIIKKYTESSVDGNKYAALASSLGHLTWEKPLYSEFQQLASESEYAAWTLVNGYALN 253

Query: 259 HVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFS 318
           HVTIS H LK+ L  IK LNQFI+D+GFRLNSEGGVLKVSPDGLL QSSTVADS  F FS
Sbjct: 254 HVTISTHRLKTHLKEIKKLNQFIKDSGFRLNSEGGVLKVSPDGLLQQSSTVADSISFKFS 313

Query: 319 DGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTSKEQLTR 377
           DG+TESVPCSYIEFAERLVLPQYKNLP+ EVKEFHRRDGFEV +ADKIFESTSKEQL+R
Sbjct: 314 DGITESVPCSYIEFAERLVLPQYKNLPDTEVKEFHRRDGFEVASADKIFESTSKEQLSR 372

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486611|ref|XP_003613593.1| hypothetical protein MTR_5g038460 [Medicago truncatula] gi|355514928|gb|AES96551.1| hypothetical protein MTR_5g038460 [Medicago truncatula]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/348 (62%), Positives = 262/348 (75%), Gaps = 22/348 (6%)

Query: 49  QPKSRNFISLKPSAPFHGNSSVPLQKRNLSV--VSASKSDDRDPSSSFQGGESFFRTVLQ 106
           +PK  N +    S+  H +  + +  RN+SV    +SK+      S+ QGGE+FFR VL+
Sbjct: 103 KPKLWNIV--PSSSTEHLSLGLSISARNMSVSCTYSSKNGSHSHGSTIQGGEAFFRGVLE 160

Query: 107 SMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGLKRLALLEGLVDVYLLSICDV 166
           SM++VYLNRNPTAKA+L+LV S  NN +CYDH+AFRTFG+    + + +   +L      
Sbjct: 161 SMQSVYLNRNPTAKAILDLVHSVENNSLCYDHLAFRTFGVNGYGI-DSMAGFFLDYGYTQ 219

Query: 167 TFSFHYPD-----------------GGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTE 209
                +P                   GSG+NGPLPR+FISELLVDQMSPQ QEIIRKYTE
Sbjct: 220 REELRFPGKKLRALWFSPPADSFSGSGSGMNGPLPRIFISELLVDQMSPQTQEIIRKYTE 279

Query: 210 TSGSGKKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKS 269
           +SG+GKK+AALAS+LG LTW KPLYSEFQQLARESEYAAWTLVNG+A+NHVTIS H LK+
Sbjct: 280 SSGNGKKYAALASSLGHLTWEKPLYSEFQQLARESEYAAWTLVNGHALNHVTISTHRLKT 339

Query: 270 QLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSY 329
            L +IK LN+F+E+NGFRLNSEGGVLKVSPDGLL QSSTVADS  F FSDG+TESVPCSY
Sbjct: 340 HLRDIKKLNKFLEENGFRLNSEGGVLKVSPDGLLQQSSTVADSVSFQFSDGITESVPCSY 399

Query: 330 IEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTSKEQLTR 377
           IEFAER VLPQY+NLP  E+KEFHRRDGFEV +ADKIFESTSKEQ++R
Sbjct: 400 IEFAERFVLPQYENLPHTEIKEFHRRDGFEVASADKIFESTSKEQVSR 447

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486607|ref|XP_003613591.1| hypothetical protein MTR_5g038460 [Medicago truncatula] gi|355514926|gb|AES96549.1| hypothetical protein MTR_5g038460 [Medicago truncatula]

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/303 (68%), Positives = 242/303 (79%), Gaps = 18/303 (5%)

Query: 92  SSFQGGESFFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGLKRLAL 151
           SS QGGE+FFR VL+SM++VYLNRNPTAKA+L+LV S  NN +CYDH+AFRTFG+    +
Sbjct: 68  SSIQGGEAFFRGVLESMQSVYLNRNPTAKAILDLVHSVENNSLCYDHLAFRTFGVNGYGI 127

Query: 152 LEGLVDVYLLSICDVTFSFHYPD-----------------GGSGVNGPLPRVFISELLVD 194
            + +   +L           +P                   GSG+NGPLPR+FISELLVD
Sbjct: 128 -DSMAGFFLDYGYTQREELRFPGKKLRALWFSPPADSFSGSGSGMNGPLPRIFISELLVD 186

Query: 195 QMSPQIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLVNG 254
           QMSPQ QEIIRKYTE+SG+GKK+AALAS+LG LTW KPLYSEFQQLARESEYAAWTLVNG
Sbjct: 187 QMSPQTQEIIRKYTESSGNGKKYAALASSLGHLTWEKPLYSEFQQLARESEYAAWTLVNG 246

Query: 255 YAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFP 314
           +A+NHVTIS H LK+ L +IK LN+F+E+NGFRLNSEGGVLKVSPDGLL QSSTVADS  
Sbjct: 247 HALNHVTISTHRLKTHLRDIKKLNKFLEENGFRLNSEGGVLKVSPDGLLQQSSTVADSVS 306

Query: 315 FCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTSKEQ 374
           F FSDG+TESVPCSYIEFAER VLPQY+NLP  E+KEFHRRDGFEV +ADKIFESTSKEQ
Sbjct: 307 FQFSDGITESVPCSYIEFAERFVLPQYENLPHTEIKEFHRRDGFEVASADKIFESTSKEQ 366

Query: 375 LTR 377
           ++R
Sbjct: 367 VSR 369

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848990|ref|XP_002892376.1| hypothetical protein ARALYDRAFT_887913 [Arabidopsis lyrata subsp. lyrata] gi|297338218|gb|EFH68635.1| hypothetical protein ARALYDRAFT_887913 [Arabidopsis lyrata subsp. lyrata]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 237/396 (59%), Positives = 276/396 (69%), Gaps = 48/396 (12%)

Query: 8   MISSHSSSIVKSASASSTFPPSLHSLAPSSSSSSSSSCLPLQPKSRNFISLKPSAPFHGN 67
           M+S HSS+I   AS   +FP SL S    S S S+ S + L              P  GN
Sbjct: 1   MMSLHSSAI--KASLHRSFPSSLRSTL--SVSFSAGSLIRL--------------PAAGN 42

Query: 68  SSVPLQKRNLSVVSASKSD-------DRDPSSSFQGGESFFRTVLQSMEAVYLNRNPTAK 120
                  R LSVV+ S  D       D   SSS    ESFFR+VL  ME VYLNRNPT K
Sbjct: 43  -------RVLSVVATSGRDSSMSSINDSRGSSSKVAAESFFRSVLGQMETVYLNRNPTPK 95

Query: 121 AVLELVQSSGNNQICYDHIAFRTFGLKRL---ALLEGLVDVYLLSICDVTFS-------- 169
           +VLELV+S  + Q+CYDH+AFRTFG+      +L    +D     + ++ F         
Sbjct: 96  SVLELVRSVDDEQLCYDHLAFRTFGIGGYGIDSLASFFLDYGYTPMDELKFPAKKLRALW 155

Query: 170 FHYPD-----GGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAALASAL 224
           F  PD     GGSGVNGPLPRVFISELLVDQMS Q Q++IRKYT  S +GKK+AAL+SAL
Sbjct: 156 FAPPDVSAVPGGSGVNGPLPRVFISELLVDQMSSQTQDVIRKYTGASPNGKKYAALSSAL 215

Query: 225 GSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDN 284
           G+LTW KPL SEF+QLARESEYAAWTLVNGYA+NHVTIS+H LKS LN IK LNQF+E+ 
Sbjct: 216 GTLTWEKPLSSEFEQLARESEYAAWTLVNGYALNHVTISVHRLKSHLNKIKKLNQFLEEK 275

Query: 285 GFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNL 344
           GF+LNSEGGVLKVSPDG L QSSTVADS  F FSDGVT+S+PCSYIEFAERLVLPQY+N+
Sbjct: 276 GFKLNSEGGVLKVSPDGGLQQSSTVADSISFKFSDGVTKSIPCSYIEFAERLVLPQYQNV 335

Query: 345 PEAEVKEFHRRDGFEVGNADKIFESTSKEQLTRRAA 380
           PE+E++E HRRDGFEVGNADKIFEST +EQL+RR  
Sbjct: 336 PESEIRESHRRDGFEVGNADKIFESTFQEQLSRRTG 371

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558220|ref|XP_002520137.1| conserved hypothetical protein [Ricinus communis] gi|223540629|gb|EEF42192.1| conserved hypothetical protein [Ricinus communis]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/308 (69%), Positives = 238/308 (77%), Gaps = 22/308 (7%)

Query: 94  FQGGESFFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGLKRLALLE 153
            Q  ESF R+VL  ME+VYLNRNPTAKAVL LVQS    +ICYDH+AFRTFG+     ++
Sbjct: 1   MQASESFLRSVLSGMESVYLNRNPTAKAVLRLVQSIDGERICYDHLAFRTFGVNGHG-ID 59

Query: 154 GLVDVYLLSICDVTFSFHYP---------------------DGGSGVNGPLPRVFISELL 192
            +  ++L           +P                       G+G+NGPLPR+FISELL
Sbjct: 60  SMASIFLDYGYTQQEELKFPAKKLKALWFAPPRISYLDCGGGDGAGINGPLPRIFISELL 119

Query: 193 VDQMSPQIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLV 252
           VDQMSPQ QEII+KYTE S SG KHAALASALGSLTW KPLY+EFQQL+RESEYAAWTLV
Sbjct: 120 VDQMSPQAQEIIKKYTEISSSGYKHAALASALGSLTWKKPLYTEFQQLSRESEYAAWTLV 179

Query: 253 NGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADS 312
           NGYA+NHVTIS H LKS L  I +LNQFIE+NGF+LN EGGVLKVSPDGLLLQSSTVADS
Sbjct: 180 NGYALNHVTISTHRLKSHLRKINALNQFIEENGFKLNCEGGVLKVSPDGLLLQSSTVADS 239

Query: 313 FPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTSK 372
             F F+DGV ESVPCSYIEFAERLVLPQ+KNLPE EVKEFHRRDGFEVGNADKIFESTSK
Sbjct: 240 ITFKFADGVNESVPCSYIEFAERLVLPQFKNLPEEEVKEFHRRDGFEVGNADKIFESTSK 299

Query: 373 EQLTRRAA 380
           EQLTRRAA
Sbjct: 300 EQLTRRAA 307

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390717|ref|NP_563777.1| uncharacterized protein [Arabidopsis thaliana] gi|8954042|gb|AAF82216.1|AC067971_24 ESTs gb|AI993254, gb|T76141 and gb|AA404864 come from this gene [Arabidopsis thaliana] gi|21593127|gb|AAM65076.1| unknown [Arabidopsis thaliana] gi|27311555|gb|AAO00743.1| expressed protein [Arabidopsis thaliana] gi|31711836|gb|AAP68274.1| At1g07040 [Arabidopsis thaliana] gi|110740580|dbj|BAE98395.1| hypothetical protein [Arabidopsis thaliana] gi|332189950|gb|AEE28071.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 233/396 (58%), Positives = 274/396 (69%), Gaps = 48/396 (12%)

Query: 8   MISSHSSSIVKSASASSTFPPSLHSLAPSSSSSSSSSCLPLQPKSRNFISLKPSAPFHGN 67
           MIS HSS+I   AS   +FP SL S    S S+ S   LP                    
Sbjct: 1   MISLHSSAI--KASLYGSFPSSLRSTLSVSFSAGSLIRLP-------------------- 38

Query: 68  SSVPLQKRNLSVV-------SASKSDDRDPSSSFQGGESFFRTVLQSMEAVYLNRNPTAK 120
               + KRNLSVV       S S ++    SSS    ESFFR+VL  ME VYLNRNPT K
Sbjct: 39  ---SVGKRNLSVVVSSGRDSSMSSNNVSRGSSSKVAAESFFRSVLGQMETVYLNRNPTPK 95

Query: 121 AVLELVQSSGNNQICYDHIAFRTFGLKRL---ALLEGLVDVYLLSICDVTFS-------- 169
           +VLELV+S  + Q+CYDH+AFRTFG+      +L    +D     + ++ F         
Sbjct: 96  SVLELVRSVDDQQLCYDHLAFRTFGIGGYGIDSLASFFLDYGYTPMDELKFPAKKLRALW 155

Query: 170 FHYPD-----GGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAALASAL 224
           F  P+     GGSGVNGPLPRVFISELLVDQMS Q Q++IRKYTE S +GKK+A L+SAL
Sbjct: 156 FAPPNASAVPGGSGVNGPLPRVFISELLVDQMSSQTQDVIRKYTEASPNGKKYAGLSSAL 215

Query: 225 GSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDN 284
           G+LTW KPL SEF+QLARESEYAAWTLVNGYA+NHVTIS+H LKS LN IK LNQF+E+ 
Sbjct: 216 GTLTWEKPLSSEFEQLARESEYAAWTLVNGYALNHVTISVHRLKSHLNKIKKLNQFLEEK 275

Query: 285 GFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNL 344
           G +LNSEGGVLKVSPDG L QSSTVADS  F F+DGVT+S+PCSYIEFAERLVLPQY+N+
Sbjct: 276 GIKLNSEGGVLKVSPDGGLQQSSTVADSISFKFADGVTKSIPCSYIEFAERLVLPQYQNI 335

Query: 345 PEAEVKEFHRRDGFEVGNADKIFESTSKEQLTRRAA 380
           PE+E++E HRRDGFEVGNADKIFEST +EQL+RR  
Sbjct: 336 PESEIQESHRRDGFEVGNADKIFESTFQEQLSRRTG 371

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282267|dbj|BAJ33999.1| unnamed protein product [Thellungiella halophila]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/326 (65%), Positives = 251/326 (76%), Gaps = 18/326 (5%)

Query: 73  QKRNLSVVSASK--SDDRDPSSSFQGGESFFRTVLQSMEAVYLNRNPTAKAVLELVQSSG 130
           +KR  S+V+AS+  S   +   S Q  ESFFR+VL  ME VYLNRNPT K+VLELV+S  
Sbjct: 48  EKRAHSIVAASRGGSMSSNGDDSRQVAESFFRSVLGQMETVYLNRNPTPKSVLELVKSVD 107

Query: 131 NNQICYDHIAFRTFGLKRL---ALLEGLVDVYLLSICDVTFS--------FHYPD----- 174
           + Q+CYDH+AFRTFG+      +L    +D     + ++ F         F  PD     
Sbjct: 108 DVQLCYDHLAFRTFGIGGYGIDSLASFFLDYGYTQMDELRFPAKKLRALWFAPPDVSAIP 167

Query: 175 GGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLY 234
           GGSGVNGPLPRVFISELLV+QMS Q Q++IRKYTET   GKK+AAL+SALG+L W KPL 
Sbjct: 168 GGSGVNGPLPRVFISELLVEQMSSQTQDVIRKYTETWPGGKKYAALSSALGTLPWEKPLS 227

Query: 235 SEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGV 294
           SEF++LARESEYAAWTLVNGYA+NHVTIS+H LKS LN IK LNQF+E+ GF+LNSEGGV
Sbjct: 228 SEFEKLARESEYAAWTLVNGYALNHVTISVHRLKSHLNKIKKLNQFLEEKGFKLNSEGGV 287

Query: 295 LKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHR 354
           LKVSPDG LLQSSTVADS  F FSDGVT+S+PCSYIEFAERLVLPQY+N+PE E++E HR
Sbjct: 288 LKVSPDGGLLQSSTVADSISFKFSDGVTKSIPCSYIEFAERLVLPQYQNVPETEIQESHR 347

Query: 355 RDGFEVGNADKIFESTSKEQLTRRAA 380
           RDGFEVGNADKIFEST++ QL+RR  
Sbjct: 348 RDGFEVGNADKIFESTNQGQLSRRTG 373

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531822|ref|XP_004172884.1| PREDICTED: uncharacterized LOC101218869 [Cucumis sativus]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/318 (66%), Positives = 242/318 (76%), Gaps = 19/318 (5%)

Query: 75  RNLSVVSASKSDDRDPSSSFQGGESFFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQI 134
           R  S++S ++  +    S  +G ESF R VL SMEAVYL RNPTAK+VLELV+S   + I
Sbjct: 51  RLFSIMSTAQPPNGLQGSRVKGAESFVRNVLASMEAVYLRRNPTAKSVLELVRSVHGDTI 110

Query: 135 CYDHIAFRTFGLKRLALLEGLVDVYL---------LSICD---VTFSFHYPD------GG 176
           CYDHIAFRTFG+     ++ L   +L         LS        F F  P        G
Sbjct: 111 CYDHIAFRTFGIDGHG-IDSLASFFLDFGYTQKEELSFPAKKLKAFWFSPPSISNAAYDG 169

Query: 177 SGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSE 236
            GVNGPLPRVFIS+LLVDQMS Q Q+IIRKYTE S +G KHAALA ALGSLTW KP +SE
Sbjct: 170 DGVNGPLPRVFISQLLVDQMSKQTQDIIRKYTECSCNGNKHAALAGALGSLTWEKPSHSE 229

Query: 237 FQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLK 296
           F+QLARESEYAAWTLVNGYA+NHVTIS H LKS L +IKSLNQFIE+NG++LNSEGGVLK
Sbjct: 230 FEQLARESEYAAWTLVNGYALNHVTISTHRLKSHLKDIKSLNQFIEENGYKLNSEGGVLK 289

Query: 297 VSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRD 356
           VSPDGLLLQSST+ADS  F FSDG+T SVPCSYIEFAER +LPQYK+LPE EVKE+HRRD
Sbjct: 290 VSPDGLLLQSSTLADSISFEFSDGITASVPCSYIEFAERALLPQYKHLPETEVKEYHRRD 349

Query: 357 GFEVGNADKIFESTSKEQ 374
           GFEVGNADKIFESTSK+Q
Sbjct: 350 GFEVGNADKIFESTSKQQ 367

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
TAIR|locus:2007372	371	AT1G07040 "AT1G07040" [Arabido	0.784	0.803	0.659	3.8e-101
TAIR|locus:2205759	310	AT1G27030 "AT1G27030" [Arabido	0.747	0.916	0.473	1.1e-69
TAIR|locus:2205749	308	AT1G27020 "AT1G27020" [Arabido	0.731	0.902	0.493	1.7e-68
UNIPROTKB|Q9KNW5	263	VC_2615 "Putative uncharacteri	0.642	0.927	0.353	1.4e-30
TIGR_CMR|VC_2615	263	VC_2615 "conserved hypothetica	0.642	0.927	0.353	1.4e-30
UNIPROTKB|Q8EJ53	267	SO_0620 "Putative hydrolase in	0.628	0.895	0.36	7.3e-27
TIGR_CMR|SO_0620	267	SO_0620 "conserved hypothetica	0.628	0.895	0.36	7.3e-27
UNIPROTKB|Q489S8	265	CPS_0428 "Putative uncharacter	0.639	0.916	0.343	2.5e-26
TIGR_CMR|CPS_0428	265	CPS_0428 "conserved hypothetic	0.639	0.916	0.343	2.5e-26

TAIR|locus:2007372 AT1G07040 "AT1G07040" [Arabidopsis thaliana (taxid:3702)]

 Score = 1003 (358.1 bits), Expect = 3.8e-101, P = 3.8e-101
 Identities = 207/314 (65%), Positives = 244/314 (77%)

Query:    81 SASKSDDRDPSSSFQGGESFFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIA 140
             S S ++    SSS    ESFFR+VL  ME VYLNRNPT K+VLELV+S  + Q+CYDH+A
Sbjct:    56 SMSSNNVSRGSSSKVAAESFFRSVLGQMETVYLNRNPTPKSVLELVRSVDDQQLCYDHLA 115

Query:   141 FRTFGLKRL---ALLEGLVDVYLLSICDVTFS--------FHYPD-----GGSGVNGPLP 184
             FRTFG+      +L    +D     + ++ F         F  P+     GGSGVNGPLP
Sbjct:   116 FRTFGIGGYGIDSLASFFLDYGYTPMDELKFPAKKLRALWFAPPNASAVPGGSGVNGPLP 175

Query:   185 RVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQLARES 244
             RVFISELLVDQMS Q Q++IRKYTE S +GKK+A L+SALG+LTW KPL SEF+QLARES
Sbjct:   176 RVFISELLVDQMSSQTQDVIRKYTEASPNGKKYAGLSSALGTLTWEKPLSSEFEQLARES 235

Query:   245 EYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLL 304
             EYAAWTLVNGYA+NHVTIS+H LKS LN IK LNQF+E+ G +LNSEGGVLKVSPDG L 
Sbjct:   236 EYAAWTLVNGYALNHVTISVHRLKSHLNKIKKLNQFLEEKGIKLNSEGGVLKVSPDGGLQ 295

Query:   305 QSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNAD 364
             QSSTVADS  F F+DGVT+S+PCSYIEFAERLVLPQY+N+PE+E++E HRRDGFEVGNAD
Sbjct:   296 QSSTVADSISFKFADGVTKSIPCSYIEFAERLVLPQYQNIPESEIQESHRRDGFEVGNAD 355

Query:   365 KIFESTSKEQLTRR 378
             KIFEST +EQL+RR
Sbjct:   356 KIFESTFQEQLSRR 369

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2205759 AT1G27030 "AT1G27030" [Arabidopsis thaliana (taxid:3702)]

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 144/304 (47%), Positives = 206/304 (67%)

Query:    85 SDDRDPSSSFQG-GESFFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRT 143
             S D   SSSF+G  E F R V +++   YL +NPTAK + ELVQS  N +ICYDH  FRT
Sbjct:     3 SFDLPHSSSFKGESEIFLRNVFENILKTYLRKNPTAKTIWELVQSLDNEKICYDHFTFRT 62

Query:   144 -----FGLKRLAL--------LEGLVDVYLLSICDVTFS---FHYPDGGSGV-NGPLPRV 186
                  +G+  L+         + G +D     +  + FS    H P+ G G+ NGPLPR+
Sbjct:    63 LKVDGYGIDSLSSFFMAYGYKIGGGLDFPKKKLRVLWFSPPDVHVPNDGHGLGNGPLPRL 122

Query:   187 FISELLVDQMSPQIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQLARESEY 246
              I+E+LVD++SP+ Q IIRKY +  G   K A L+S LGSL W KP +++F+QLA+ESE+
Sbjct:   123 VIAEVLVDELSPESQGIIRKYLKQEGG--KQAVLSSTLGSLIWEKPTWTDFKQLAKESEF 180

Query:   247 AAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQS 306
             AAWTL++GY +NH+  ++H  K + ++IK + Q +E+ GF+LNS+G +LKVS DGLL Q 
Sbjct:   181 AAWTLIHGYTMNHLAFAVHRFKHRFSDIKFVKQRLEEKGFKLNSDGEILKVSQDGLLFQV 240

Query:   307 STVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKI 366
             S++++  P  F+DGVTE++P SYIEF +R VLP++K++P  E+KEFHRR+ FE+ NA+ +
Sbjct:   241 SSISERLPVTFADGVTETIPASYIEFTQRQVLPEFKDVPLDEIKEFHRREAFELDNANHV 300

Query:   367 FEST 370
              EST
Sbjct:   301 MEST 304

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2205749 AT1G27020 "AT1G27020" [Arabidopsis thaliana (taxid:3702)]

 Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
 Identities = 147/298 (49%), Positives = 199/298 (66%)

Query:    91 SSSFQGG-ESFFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTF----- 144
             +SSF+GG E+F + V +S+   YL +NP AK + ELV+S  N +I YDH  FRTF     
Sbjct:     9 ASSFKGGSETFLQNVFESILKTYLRKNPMAKTIWELVKSVDNEKISYDHFFFRTFKVDGY 68

Query:   145 GLKRLAL--------LEGLVDVYLLSICDVTFS---FHYPDGGSGV-NGPLPRVFISELL 192
             G+  LA         + G +D     +  +  S    H+PD G G+ NGPLPR+ I+ELL
Sbjct:    69 GIDSLASFFMDYGYKVGGRLDFPKKKVQVLWLSPPDVHFPDNGYGIGNGPLPRLVIAELL 128

Query:   193 VDQMSPQIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLV 252
             V+++SP+ QEIIRKY +  G   K A L+S LGSL W KP  ++F QLA+ESE+AAWTLV
Sbjct:   129 VEELSPESQEIIRKYLKPEGG--KQAVLSSTLGSLIWEKPTSTDFNQLAKESEFAAWTLV 186

Query:   253 NGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADS 312
              GY +NH+  ++H LK + ++IK + ++ E+NGF LN +GGVLKVS D LLLQ S +++ 
Sbjct:   187 YGYTMNHLAFAVHRLKHRFSDIKCVKEYFEENGFELNKDGGVLKVSEDSLLLQVSAMSEK 246

Query:   313 FPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFEST 370
                 F+DGVT+ VP SYIEF ERLVLPQ+K++P  E+KEFHRR+G E  +A  I EST
Sbjct:   247 LVVEFADGVTQIVPASYIEFVERLVLPQFKDMPCDEIKEFHRREGLEQASAYHIMEST 304

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9KNW5 VC_2615 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 100/283 (35%), Positives = 148/283 (52%)

Query:   104 VLQSMEAVYLNRN-PTAKAVLELVQSSGNNQICYDHIAFRTFGLKRLALLEGLVDVYLL- 161
             + QS+   Y+ R  P+A  V +L+Q   +  +  DHIA RTF L  L L E L   +L  
Sbjct:     6 LFQSLWNDYIERLCPSADRVHQLLQE--DEPLINDHIALRTFNLAPLGL-ETLAKPFLAL 62

Query:   162 --SIC-DVTFS--------FHYPDGGSGVNGPL-PRVFISELLVDQMSPQIQEIIRKYTE 209
                 C +  F         F +PD       PL P+VFISEL V++ SP++Q I+ K   
Sbjct:    63 GYQACGEYEFKSKKLFAKHFEHPD-------PLQPKVFISELKVEECSPELQAIVEKLV- 114

Query:   210 TSGSGKKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKS 269
                  +  A+ A   G   W    ++++  LA+ESEYAAW   +GY  NH T+S++ L +
Sbjct:   115 AQVQPQALASEAFLYGGRLWSLS-HADYLTLAKESEYAAWLAAHGYGANHFTVSVNQLNA 173

Query:   270 QLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSY 329
              L+ +K +N  +  +GF +N  GG +K SP+ LL QSST+AD     F++G  E +P  +
Sbjct:   174 -LHEVKQVNDHLRQHGFSINESGGEVKGSPEVLLEQSSTMADKVLVRFNEGA-EMIPGGF 231

Query:   330 IEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTSK 372
              EFA+R  +   +  P           GF   +ADKIFEST++
Sbjct:   232 YEFAKRYPMANGQLYP-----------GFVEASADKIFESTNR 263

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_2615 VC_2615 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 100/283 (35%), Positives = 148/283 (52%)

Query:   104 VLQSMEAVYLNRN-PTAKAVLELVQSSGNNQICYDHIAFRTFGLKRLALLEGLVDVYLL- 161
             + QS+   Y+ R  P+A  V +L+Q   +  +  DHIA RTF L  L L E L   +L  
Sbjct:     6 LFQSLWNDYIERLCPSADRVHQLLQE--DEPLINDHIALRTFNLAPLGL-ETLAKPFLAL 62

Query:   162 --SIC-DVTFS--------FHYPDGGSGVNGPL-PRVFISELLVDQMSPQIQEIIRKYTE 209
                 C +  F         F +PD       PL P+VFISEL V++ SP++Q I+ K   
Sbjct:    63 GYQACGEYEFKSKKLFAKHFEHPD-------PLQPKVFISELKVEECSPELQAIVEKLV- 114

Query:   210 TSGSGKKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKS 269
                  +  A+ A   G   W    ++++  LA+ESEYAAW   +GY  NH T+S++ L +
Sbjct:   115 AQVQPQALASEAFLYGGRLWSLS-HADYLTLAKESEYAAWLAAHGYGANHFTVSVNQLNA 173

Query:   270 QLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSY 329
              L+ +K +N  +  +GF +N  GG +K SP+ LL QSST+AD     F++G  E +P  +
Sbjct:   174 -LHEVKQVNDHLRQHGFSINESGGEVKGSPEVLLEQSSTMADKVLVRFNEGA-EMIPGGF 231

Query:   330 IEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTSK 372
              EFA+R  +   +  P           GF   +ADKIFEST++
Sbjct:   232 YEFAKRYPMANGQLYP-----------GFVEASADKIFESTNR 263

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8EJ53 SO_0620 "Putative hydrolase involved in arginine and ornithine metabolism" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 99/275 (36%), Positives = 139/275 (50%)

Query:   112 YLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGLKR--LALL-EGLVDVYLLSICDVTF 168
             Y+   P+A  V EL+   G   I  DHIA RTF + +  LA+L E    +  ++  D  F
Sbjct:    16 YIQMTPSAAKVHELL-GHGK-PIINDHIALRTFNIAKVNLAVLAEHFTSLGYVACGDYKF 73

Query:   169 S--------FHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAAL 220
                      F +PD         P+VFISELLV++ S  +Q  I+            A  
Sbjct:    74 EQKKLIAKHFEHPDATQ------PKVFISELLVEEFSSALQSTIQGLIAQVDEQATKADN 127

Query:   221 ASALGSLTWGKPLYSE-FQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQ 279
                 G   W   L S+ ++ L  ESEYAAW    GY  NH T+SI+HL+   + ++S+N 
Sbjct:   128 FIYSGR-HW--TLDSKTYEALLEESEYAAWVAAFGYRANHFTVSINHLEG-FDTLESVND 183

Query:   280 FIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLP 339
              ++  GF LN+ GG +K SP+ LL QSST+AD     FSD   E +P  + EFA R    
Sbjct:   184 ALKQAGFVLNTSGGEIKGSPEVLLEQSSTMADKIAVEFSDATVE-IPSCFYEFALR---- 238

Query:   340 QYKNLPEAEVKEFHRRDGFEVGNADKIFESTSKEQ 374
              Y   P+A  + +    GF   +ADKIFEST+ ++
Sbjct:   239 -Y---PKANGELY---TGFVAASADKIFESTNAKK 266

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_0620 SO_0620 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 99/275 (36%), Positives = 139/275 (50%)

Query:   112 YLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGLKR--LALL-EGLVDVYLLSICDVTF 168
             Y+   P+A  V EL+   G   I  DHIA RTF + +  LA+L E    +  ++  D  F
Sbjct:    16 YIQMTPSAAKVHELL-GHGK-PIINDHIALRTFNIAKVNLAVLAEHFTSLGYVACGDYKF 73

Query:   169 S--------FHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAAL 220
                      F +PD         P+VFISELLV++ S  +Q  I+            A  
Sbjct:    74 EQKKLIAKHFEHPDATQ------PKVFISELLVEEFSSALQSTIQGLIAQVDEQATKADN 127

Query:   221 ASALGSLTWGKPLYSE-FQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQ 279
                 G   W   L S+ ++ L  ESEYAAW    GY  NH T+SI+HL+   + ++S+N 
Sbjct:   128 FIYSGR-HW--TLDSKTYEALLEESEYAAWVAAFGYRANHFTVSINHLEG-FDTLESVND 183

Query:   280 FIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLP 339
              ++  GF LN+ GG +K SP+ LL QSST+AD     FSD   E +P  + EFA R    
Sbjct:   184 ALKQAGFVLNTSGGEIKGSPEVLLEQSSTMADKIAVEFSDATVE-IPSCFYEFALR---- 238

Query:   340 QYKNLPEAEVKEFHRRDGFEVGNADKIFESTSKEQ 374
              Y   P+A  + +    GF   +ADKIFEST+ ++
Sbjct:   239 -Y---PKANGELY---TGFVAASADKIFESTNAKK 266

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q489S8 CPS_0428 "Putative uncharacterized protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 91/265 (34%), Positives = 135/265 (50%)

Query:   112 YLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGLKRLALLE---GLVDVYLLSICDVTF 168
             YL+  P+AK + +L+  +GN+ I  DH+A+RTF   ++ L +   GL+ +         F
Sbjct:    16 YLSVTPSAKKIHQLL-GNGNDVI-NDHVAYRTFNHPKINLAQLAKGLLALGYTECGQYDF 73

Query:   169 SFHYPDGG--SGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAALASALGS 226
             S    D       +  +P+VFISEL V++ S ++Q+II              A     G 
Sbjct:    74 SAKKLDAKHFEHADSTMPKVFISELRVEEFSSEVQDIITGLIAQLPEDVSDRADFLYAGR 133

Query:   227 LTWGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGF 286
             L W +    ++  L   SEYAAW    GY  NH T+SI+HL +   +I+ +N  ++D G+
Sbjct:   134 L-W-EISSKDYDTLLNVSEYAAWLAAWGYRANHFTVSINHL-ANYEDIEVVNATLKDAGY 190

Query:   287 RLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPE 346
              LN+ GG +K      L QSST+AD  P  FSD   E +P  + EFA+R   P    L  
Sbjct:   191 ALNANGGEIKGDEAVKLEQSSTLADKAPVDFSDKTME-IPSCFYEFAKRY--P----LAS 243

Query:   347 AEVKEFHRRDGFEVGNADKIFESTS 371
              E+       GF   +ADKIF+ST+
Sbjct:   244 GELYT-----GFVAASADKIFDSTN 263

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_0428 CPS_0428 "conserved hypothetical protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 91/265 (34%), Positives = 135/265 (50%)

Query:   112 YLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGLKRLALLE---GLVDVYLLSICDVTF 168
             YL+  P+AK + +L+  +GN+ I  DH+A+RTF   ++ L +   GL+ +         F
Sbjct:    16 YLSVTPSAKKIHQLL-GNGNDVI-NDHVAYRTFNHPKINLAQLAKGLLALGYTECGQYDF 73

Query:   169 SFHYPDGG--SGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAALASALGS 226
             S    D       +  +P+VFISEL V++ S ++Q+II              A     G 
Sbjct:    74 SAKKLDAKHFEHADSTMPKVFISELRVEEFSSEVQDIITGLIAQLPEDVSDRADFLYAGR 133

Query:   227 LTWGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGF 286
             L W +    ++  L   SEYAAW    GY  NH T+SI+HL +   +I+ +N  ++D G+
Sbjct:   134 L-W-EISSKDYDTLLNVSEYAAWLAAWGYRANHFTVSINHL-ANYEDIEVVNATLKDAGY 190

Query:   287 RLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPE 346
              LN+ GG +K      L QSST+AD  P  FSD   E +P  + EFA+R   P    L  
Sbjct:   191 ALNANGGEIKGDEAVKLEQSSTLADKAPVDFSDKTME-IPSCFYEFAKRY--P----LAS 243

Query:   347 AEVKEFHRRDGFEVGNADKIFESTS 371
              E+       GF   +ADKIF+ST+
Sbjct:   244 GELYT-----GFVAASADKIFDSTN 263


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      380       338   0.00094  116 3  11 22  0.40    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  211 KB (2118 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.27u 0.16s 27.43t   Elapsed:  00:00:01
  Total cpu time:  27.27u 0.16s 27.43t   Elapsed:  00:00:01
  Start:  Fri May 10 03:29:21 2013   End:  Fri May 10 03:29:22 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	380
pfam07063	288	pfam07063, DUF1338, Domain of unknown function (DU	1e-104

>gnl|CDD|219283 pfam07063, DUF1338, Domain of unknown function (DUF1338)

 Score =  309 bits (794), Expect = e-104
 Identities = 115/294 (39%), Positives = 157/294 (53%), Gaps = 31/294 (10%)

Query: 102 RTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTF-----GLKRLA-LLEGL 155
           R    ++   YL R P+A  +++LV S     +  DH AFRTF     GL  LA L   L
Sbjct: 2   RAFFAALWEDYLARVPSAGTIVDLVAS-VGETVLNDHGAFRTFGGPPLGLAALARLFLAL 60

Query: 156 ----VDVYLLSICDVTFSFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETS 211
               V  Y      +  +  +       + PLPRVFISEL V+ +SP++QEII KY  + 
Sbjct: 61  GYVPVGYYDFPAKKLH-ARAF----RPPDAPLPRVFISELRVELLSPELQEIIEKYLASR 115

Query: 212 -------------GSGKKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVN 258
                         +      LA  LG+  W  P  ++++QL  ESEYAAW L +GYA+N
Sbjct: 116 DIFTPRGLELLDAAAEDAAEFLAEFLGTFPWQLPSLADYEQLLAESEYAAWVLAHGYAIN 175

Query: 259 HVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFS 318
           H T+ ++ L     +I ++N  +++ GF LNS GG +K SPDGLL Q+ST AD  P  F+
Sbjct: 176 HFTVRVNRLS-GFLDIDAVNAALKELGFPLNSSGGEIKGSPDGLLRQTSTKADEEPVEFA 234

Query: 319 DG-VTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTS 371
           DG V  SVP S+ EFA+R  LP   + P  E+ E    +GF  G+AD IFEST 
Sbjct: 235 DGDVQRSVPGSFYEFAQRYPLPDGLDAPGDEIAEPILYEGFLPGSADGIFESTL 288

This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz). Length = 288

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	380
PF07063	302	DUF1338: Domain of unknown function (DUF1338); Int	100.0
COG5383	295	Uncharacterized protein conserved in bacteria [Fun	98.71
cd07250	191	HPPD_C_like C-terminal domain of 4-hydroxyphenylpy	97.46
TIGR01263	353	4HPPD 4-hydroxyphenylpyruvate dioxygenase. This pr	97.24
PLN02875	398	4-hydroxyphenylpyruvate dioxygenase	94.73
COG3185	363	4-hydroxyphenylpyruvate dioxygenase and related he	94.03
KOG0638	381	consensus 4-hydroxyphenylpyruvate dioxygenase [Ami	92.57
PF13669	109	Glyoxalase_4: Glyoxalase/Bleomycin resistance prot	81.04

>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function

Probab=100.00  E-value=7.3e-84  Score=629.16  Aligned_cols=264  Identities=39%  Similarity=0.612  Sum_probs=217.6

Q ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHhcCCCcccccceeeeecCCCccch---hhHHHhcCCeecceeee--------ee
Q 016952          102 RTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGLKRLAL---LEGLVDVYLLSICDVTF--------SF  170 (380)
Q Consensus       102 r~~f~~Lw~~Y~~~vP~a~~i~~lv~~~~g~~i~nDHiAfRT~~~~~~Gi---ar~F~~LGY~~~G~Y~F--------~f  170 (380)
                      ++++++||++|+++||+|++|++++.+ .|++++|||||||||+.++.|+   +++|++|||+++|+|+|        ||
T Consensus         2 ~~~~~~L~~~Y~~~vP~~~~~~~lv~~-~~~~v~~dH~A~RT~~~~~~gl~~lar~F~~lGy~~~G~Y~f~~kkl~a~~f   80 (302)
T PF07063_consen    2 QAFFDALWEMYLQRVPSAGTLVELVAE-VGETVLNDHGAFRTFGGPPYGLASLARIFAALGYEPVGYYDFPAKKLHATWF   80 (302)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHHHHHHHH-TTCHCHEEEEEEEEECTSHCCHHHHHHHHHTTTEEEEEEEEEGGGTEEEEEE
T ss_pred             hHHHHHHHHHHHHHCcCHHHHHHHHHH-cCccceeeeeEEEecCCCchhHHHHHHHHHHcCCEEcceecccccCceEEEe
Confidence            468899999999999999999999986 6788999999999999999999   99999999999999999        99


Q ss_pred             cCCCCCCCCCCCCCeEEeeccccCcCCHHHHHHHHHHHhhcCCC----------------c----hHHHHHHHhcCCCCC
Q 016952          171 HYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSG----------------K----KHAALASALGSLTWG  230 (380)
Q Consensus       171 ~pp~~~l~~~g~~PRVFISEL~vd~lS~~~q~iI~~lv~~~~~~----------------~----~~~~l~~~~~~~~W~  230 (380)
                      +||++...    .||||||||+||+||+++|++|++++.+++.-                +    ..+++++++++|+|+
T Consensus        81 ~p~d~~~~----~prvFiSeL~~e~ls~~~q~~i~~~l~~r~~~~~~~~~~l~~~~~~~~l~~~~a~~~v~~~~~~~~W~  156 (302)
T PF07063_consen   81 RPPDPPEL----APRVFISELRVEELSPELQEIIEKYLSRRDPFSPRPLELLDQAERQGGLSAEQADEFVAEALSGFPWQ  156 (302)
T ss_dssp             EETSCTCC----C-EEEEEEE-GGGSSHHHHHHHHHHHTTS-GCGHHHHHHHHHHHHHSCEBHHHHHHHHHHHGGGCSS-
T ss_pred             cCCCCccc----CCeEEeecccHhhcCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcccCCC
Confidence            99997421    29999999999999999999999999665521                1    124567899999999


Q ss_pred             C--CCHHHHHHHHHhhhhhhHhhhcCCCCcccceecccccccCCCHHHHHHHHHHCCCccccCCCeEEeCCCcceEeeee
Q 016952          231 K--PLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSST  308 (380)
Q Consensus       231 ~--ps~adYe~L~~ESeyAAWIa~~Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~GG~IkgSP~glLrQSSt  308 (380)
                      .  |+++||++|++||||||||+++||++||||++||+|+ ..+||++||++|+++|++||++||+|||||+++||||||
T Consensus       157 ~~~ps~~~Y~~L~~eSe~aAWi~~~G~~~NH~T~~v~~l~-~~~dI~~v~~~l~~~G~~~n~~g~~Iegsp~~lLrQtS~  235 (302)
T PF07063_consen  157 HRAPSLADYQTLLAESEYAAWIAAHGYHINHFTPRVNRLK-KFLDIDAVNAFLKERGIPMNDSGGEIEGSPDGLLRQTST  235 (302)
T ss_dssp             SB-SBHHHHHHHHHH-HHHHHHHHHTCS-SEEEEETTT-T-T-S-HHHHHHHHHHTT--B--TTSSSEECCCCSEEEEEB
T ss_pred             CCCCCHHHHHHHHHHhHHHHhhcccccccceeeceeeccc-ccccHHHHHHHHHHcCCCccccCCceEECCCCCEEEEee
Confidence            8  9999999999999999999999999999999999998 679999999999999999999999999999999999999


Q ss_pred             cccceeEEecCC----cEeeeccceEeeeeeccCCCCCCCChhhhhhhccccCcCCCChhHHHHhhh
Q 016952          309 VADSFPFCFSDG----VTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTS  371 (380)
Q Consensus       309 ~Ad~~~v~F~DG----~~~~IPgsfyEFaeR~~lp~~~~~~~~el~~~~~~~GF~a~NAdkIFEST~  371 (380)
                      +|++++|+|.||    +++.||||||||+||+|+|++.+++..+..+.++|+||+++|||||||||+
T Consensus       236 ~A~~~~v~F~d~~g~~~~~~ip~~f~Ef~~R~~~~~~~~~~~~~~~~~~~yegF~~~sA~~IFeSt~  302 (302)
T PF07063_consen  236 MADEEEVTFADGDGSLVEGSIPGSFYEFAQRYPLPEGLILPGDEIAEPILYEGFLPGSADGIFESTL  302 (302)
T ss_dssp             EEEEEEEEETTETS-ECEEEEEEEEEEEEEE-CTTCCHHHTTSEEEEESB--SSS------------
T ss_pred             ccceeEEEEecCCCceeeeEeeeeEEeehhhccCcccccCccccccCCcccCCCChhhhhhhhccCC
Confidence            999999999998    677899999999999999999888888999999999999999999999995

The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.

>COG5383 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.71  E-value=6.5e-09  Score=100.91  Aligned_cols=70  Identities=19%  Similarity=0.221  Sum_probs=61.3

Q ss_pred             HHHHHHHHH-HHHHHHHhCCcHHHHHHHHHhcCCCccc----------------ccceeeeecCCCccch-hhHHHhcCC
Q 016952           99 SFFRTVLQS-MEAVYLNRNPTAKAVLELVQSSGNNQIC----------------YDHIAFRTFGLKRLAL-LEGLVDVYL  160 (380)
Q Consensus        99 ~~Lr~~f~~-Lw~~Y~~~vP~a~~i~~lv~~~~g~~i~----------------nDHiAfRT~~~~~~Gi-ar~F~~LGY  160 (380)
                      ..+|.-|.+ |+.||.++||.+++++++|.++|.+.+.                .+|+|+|..+..++.. +|+|+.|||
T Consensus         8 d~ir~~fs~ams~my~~evp~ygtl~elva~vn~~~l~~~~~~~~~~~l~r~~~erhgairvgt~~el~~~rr~fa~mgm   87 (295)
T COG5383           8 DEIRAAFSAAMSAMYQEEVPAYGTLLELVADVNSDVLTRHRRLERTDSLERLTEERHGAIRVGTAAELSMLRRLFAVMGM   87 (295)
T ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhHHHHHHHHHHHhcchHHHhhHHhcCceecCCHHHHHHHHHHHHHhcC
Confidence            468888887 9999999999999999999987655433                7899999877777766 999999999


Q ss_pred             eecceeee
Q 016952          161 LSICDVTF  168 (380)
Q Consensus       161 ~~~G~Y~F  168 (380)
                      .|+||||+
T Consensus        88 ~pv~yydl   95 (295)
T COG5383          88 YPVGYYDL   95 (295)
T ss_pred             Ccccceec
Confidence            99999999

>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS)

Probab=97.46  E-value=0.0005  Score=63.17  Aligned_cols=92  Identities=23%  Similarity=0.303  Sum_probs=66.1

Q ss_pred             hhhhhHhhhc-CCCCcccceecccccccCCCHHHHHHHHHHCCCccccC-----------CC----------------eE
Q 016952          244 SEYAAWTLVN-GYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSE-----------GG----------------VL  295 (380)
Q Consensus       244 SeyAAWIa~~-Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~-----------GG----------------~I  295 (380)
                      |++..++..+ |..+.|+++       .+.||++..+.|+++|+++-..           -+                .+
T Consensus        70 s~~~~fl~~~~G~Gv~HIAf-------~vdDI~~~~~~L~~~Gv~~l~~P~~yy~~l~~r~~~~~~~~~~~~l~~~~il~  142 (191)
T cd07250          70 SQIQEFLEYYGGAGVQHIAL-------ATDDIFATVAALRARGVEFLPIPDNYYDDLEARLDGILVDEDLDTLRELGILV  142 (191)
T ss_pred             cHHHHHHHHhCCCceeEEEE-------ECCCHHHHHHHHHHcCCeeccCchhhHHHHHHhccccccchhHHHHHHCCEEE
Confidence            4444555554 778999997       6789999999999999866431           01                01


Q ss_pred             EeCCCcceEeeeecccceeEEecCCcEeeeccceEeeeeeccCCCCCCCChhhhhhhccccCcCCCChhHHHHhh
Q 016952          296 KVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFEST  370 (380)
Q Consensus       296 kgSP~glLrQSSt~Ad~~~v~F~DG~~~~IPgsfyEFaeR~~lp~~~~~~~~el~~~~~~~GF~a~NAdkIFEST  370 (380)
                      -....+.|.|..|+...      |     -|.=|+|++||.    |             +.||-+||+..+||+-
T Consensus       143 d~~~~~~llq~ft~~~~------~-----~~~~f~E~iqR~----g-------------~~gfg~~N~~~l~~a~  189 (191)
T cd07250         143 DRDDGGYLLQIFTKPVF------D-----RPTFFFEIIQRR----G-------------YTGFGAGNFKALFEAI  189 (191)
T ss_pred             ECCCCCEEEEEeccCCC------C-----CCCeEEEEEEEc----C-------------CCccccchHHHHHHHh
Confidence            11235778888777432      1     156799999997    3             7999999999999973

HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,

>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase

Probab=97.24  E-value=0.0014  Score=65.41  Aligned_cols=100  Identities=24%  Similarity=0.341  Sum_probs=74.5

Q ss_pred             hhhhhHhhhc-CCCCcccceecccccccCCCHHHHHHHHHHCCCccccCC-------------------------Ce-EE
Q 016952          244 SEYAAWTLVN-GYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEG-------------------------GV-LK  296 (380)
Q Consensus       244 SeyAAWIa~~-Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~G-------------------------G~-Ik  296 (380)
                      |+...++..+ |-.+.|+++       ++.||++..+.|+++|+++...-                         |+ |-
T Consensus       225 s~i~~fl~~~~g~Gv~HiAf-------~vdDi~~~~~~l~~~Gv~~l~~P~~yY~~l~~r~~~~~~~~~~~l~~~~iL~D  297 (353)
T TIGR01263       225 SQIEEFLEFYNGAGVQHIAL-------NTDDIVRTVRALRARGVEFLDTPDTYYDLLGERLGGHVKEDLDTLRELNILID  297 (353)
T ss_pred             CHHHHHHHHcCCCCccEEEE-------EcCCHHHHHHHHHHcCCccCcCCHHHHHHHHHHhcccccchHHHHHHCCEEEe
Confidence            4455556565 788999997       78899999999999999665320                         11 22


Q ss_pred             eCCCcceEeeeecccceeEEecCCcEeeeccceEeeeeeccCCCCCCCChhhhhhhccccCcCCCChhHHHHhhhhhhhh
Q 016952          297 VSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTSKEQLT  376 (380)
Q Consensus       297 gSP~glLrQSSt~Ad~~~v~F~DG~~~~IPgsfyEFaeR~~lp~~~~~~~~el~~~~~~~GF~a~NAdkIFEST~~~~~~  376 (380)
                      ...+|+|.|..|+..-      |     -|.=|+|++||.    +             ++||=+||=..+||+--.+|++
T Consensus       298 ~d~~g~llqift~~~~------~-----~~~~FfEiiqR~----~-------------~~gfG~gN~~alf~a~e~~q~~  349 (353)
T TIGR01263       298 GDEDGYLLQIFTKPLQ------D-----RGTLFFEIIQRK----G-------------AGGFGEGNFKALFEAIEREQER  349 (353)
T ss_pred             cCCCceEEEEeccCCC------C-----CCCeEEEEEEEc----C-------------CCccchhhHHHHHHHHHHHHHH
Confidence            3456788888877321      1     155699999997    2             7999999999999999888877


Q ss_pred             hh
Q 016952          377 RR  378 (380)
Q Consensus       377 ~~  378 (380)
                      |-
T Consensus       350 r~  351 (353)
T TIGR01263       350 RG  351 (353)
T ss_pred             hc
Confidence            63

This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.

>PLN02875 4-hydroxyphenylpyruvate dioxygenase

Probab=94.73  E-value=0.16  Score=52.76  Aligned_cols=110  Identities=22%  Similarity=0.345  Sum_probs=73.9

Q ss_pred             hhhhhhHhhhc-CCCCcccceecccccccCCCHHHHHHHHHHC----CCccccC-------------C------------
Q 016952          243 ESEYAAWTLVN-GYAVNHVTISIHHLKSQLNNIKSLNQFIEDN----GFRLNSE-------------G------------  292 (380)
Q Consensus       243 ESeyAAWIa~~-Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~----G~~ln~~-------------G------------  292 (380)
                      .|+.+-++..+ |-.+.|.++       ++.||.+.-+.|+++    |+++-+-             +            
T Consensus       248 ~SqI~eFL~~~~G~GIQHIAl-------~tdDI~~av~~Lra~~~~~Gv~fL~~Pp~~YYd~L~~R~~~~l~~e~~~~L~  320 (398)
T PLN02875        248 KSQIQTYLEHNEGPGLQHLAL-------KSDDIFGTLREMRARSHIGGFEFMPPPPPTYYKNLKKRVGDVLTEEQIKECE  320 (398)
T ss_pred             cChHHHHHHhcCCCCeeEEEe-------ecCCHHHHHHHHHhccccCCeecCCCChHHHHHHHHHHhccCCChhhHHHHH
Confidence            58888888888 589999996       788999999999998    8754431             0            


Q ss_pred             --Ce-EEeCCCcceEeeeecccceeEEecCCcEeeeccceEeeeeecc--CCCCCCCChhhhhhhccccCcCCCChhHHH
Q 016952          293 --GV-LKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLV--LPQYKNLPEAEVKEFHRRDGFEVGNADKIF  367 (380)
Q Consensus       293 --G~-IkgSP~glLrQSSt~Ad~~~v~F~DG~~~~IPgsfyEFaeR~~--lp~~~~~~~~el~~~~~~~GF~a~NAdkIF  367 (380)
                        |+ |-...+|+|.|..|+..-      |     =|-=|+||+||.-  ..+....+.+   ..+-.+||=.||=..+|
T Consensus       321 ~~~ILvD~d~~G~LLQIFTkp~~------~-----rpt~FfEiIQR~g~~~~~~~~~~~~---~~~g~~GFG~GNfkALF  386 (398)
T PLN02875        321 ELGILVDKDDQGVLLQIFTKPVG------D-----RPTLFLEIIQRIGCMEKDEEGKEYE---QAGGCGGFGKGNFSELF  386 (398)
T ss_pred             HcCEEEecCCCceEEEEeccccC------C-----CCceEEEEEEecCcccccccccccc---ccccCCCcCcccHHHHH
Confidence              11 222334666666666321      1     1446999999973  1111111112   22336999999999999


Q ss_pred             Hhhhhh
Q 016952          368 ESTSKE  373 (380)
Q Consensus       368 EST~~~  373 (380)
                      |+--..
T Consensus       387 eaiE~~  392 (398)
T PLN02875        387 KSIEEY  392 (398)
T ss_pred             HHHHHH
Confidence            998766

>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]

Probab=94.03  E-value=0.16  Score=51.92  Aligned_cols=89  Identities=24%  Similarity=0.335  Sum_probs=62.9

Q ss_pred             cCCCCcccceecccccccCCCHHHHHHHHHHCCCcccc-----------C--------------CCeEEeCCCc-ceEee
Q 016952          253 NGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNS-----------E--------------GGVLKVSPDG-LLLQS  306 (380)
Q Consensus       253 ~Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~-----------~--------------GG~IkgSP~g-lLrQS  306 (380)
                      +|-.+-|.++       .+.||-+..+.|+++|+++-+           +              +=.|-+-+++ .|.|-
T Consensus       242 ~G~GIQHIA~-------~T~dI~~tv~~lr~rG~~fl~ip~tYYd~~~~R~~~~~e~ld~Lr~~~IL~D~~~~~~~lLQi  314 (363)
T COG3185         242 RGEGIQHIAF-------GTDDIYATVAALRERGVKFLPIPETYYDDLDARFPLHGEFLDALRELEILYDGDGGGGELLQI  314 (363)
T ss_pred             CCCcceEEEe-------cccHHHHHHHHHHHcCCccCCCchhHHHHHhhcCCCChHHHHHHHhcCeEeecCCCCcEEEEE
Confidence            5888999996       789999999999999996643           1              0011222222 34444


Q ss_pred             eecccceeEEecCCcEeeeccceEeeeeeccCCCCCCCChhhhhhhccccCcCCCChhHHHHhhhhhhhhh
Q 016952          307 STVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTSKEQLTR  377 (380)
Q Consensus       307 St~Ad~~~v~F~DG~~~~IPgsfyEFaeR~~lp~~~~~~~~el~~~~~~~GF~a~NAdkIFEST~~~~~~~  377 (380)
                      .|+-             .+..-|+||+||.  - |             ++||=+||=...|||-...|.+|
T Consensus       315 ft~~-------------~~g~~FFEiIeRR--~-g-------------~~GfGegNF~Alfe~~eq~q~rR  356 (363)
T COG3185         315 FTRT-------------FIGPFFFEIIERR--K-G-------------YQGFGEGNFKALFESIEQDQIRR  356 (363)
T ss_pred             eccc-------------ccCceeEEEEEec--c-c-------------cccccccchhhHHHHHHHHHhhh
Confidence            3321             1456699999995  1 1             79999999999999998888766

>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]

Probab=92.57  E-value=0.87  Score=46.42  Aligned_cols=206  Identities=19%  Similarity=0.208  Sum_probs=112.9

Q ss_pred             hCCcHHHHHHHHHhcCCCccc------c-cceeeeecCCCccch--hhHHHhcCCeecceeee--eecCCCCCCCCCCCC
Q 016952          115 RNPTAKAVLELVQSSGNNQIC------Y-DHIAFRTFGLKRLAL--LEGLVDVYLLSICDVTF--SFHYPDGGSGVNGPL  183 (380)
Q Consensus       115 ~vP~a~~i~~lv~~~~g~~i~------n-DHiAfRT~~~~~~Gi--ar~F~~LGY~~~G~Y~F--~f~pp~~~l~~~g~~  183 (380)
                      +|-++..+.+...+ +|-.+.      + +.++.|.-.+.-+|.  -.+++..||+  |.  |  -|+|+... .+-.++
T Consensus        98 eVeD~da~~~~~va-~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~--g~--FLPGF~~v~~~-~~fp~l  171 (381)
T KOG0638|consen   98 EVEDADAIFQEAVA-NGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYK--GP--FLPGFEPVSSD-ALFPKL  171 (381)
T ss_pred             EecchHHHHHHHHH-cCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhcccc--cc--CCCCcccCccc-cccCCC
Confidence            67788888777764 555544      2 245555555555666  5667777774  33  4  55554321 111247


Q ss_pred             CeEEeeccccCcCCHHHHHHHHHHHhhcCCCchHHHHHHHhcCC----CCCCCCHHHHHHHHHhhhhhhH----------
Q 016952          184 PRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAALASALGSL----TWGKPLYSEFQQLARESEYAAW----------  249 (380)
Q Consensus       184 PRVFISEL~vd~lS~~~q~iI~~lv~~~~~~~~~~~l~~~~~~~----~W~~ps~adYe~L~~ESeyAAW----------  249 (380)
                      ||..++-+             .-+|...+++.-..++....++.    -|..+   |=+.=.++|.+-+|          
T Consensus       172 ~~~~~~~i-------------DH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvd---d~~v~te~SaLrs~vlan~~esi~  235 (381)
T KOG0638|consen  172 PKGGLNRI-------------DHVVGNQPDGEMESALRWYEKCLGFHRFWSVD---DSQVHTEYSALRSIVLANYEESIK  235 (381)
T ss_pred             Cccceeeh-------------hhhhccCCcccchHHHHHHHHhhcccccccCC---cchhhhHHHHHHHHHHhcCCccEE
Confidence            77766543             22333333333333333333322    23211   22233333333333          


Q ss_pred             -------------------hhhc-CCCCcccceecccccccCCCHHHHHHHHHHCCCcccc-----------C-------
Q 016952          250 -------------------TLVN-GYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNS-----------E-------  291 (380)
Q Consensus       250 -------------------Ia~~-Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~-----------~-------  291 (380)
                                         |..+ |-.+-|++.       .+.||=..-+.|+.+|...-.           +       
T Consensus       236 mpinEp~~G~k~ksQIqeyv~y~gG~GvQHiaL-------~tedIi~Ai~~lr~rG~eFLs~Ps~YYqnl~erl~~~~~~  308 (381)
T KOG0638|consen  236 MPINEPAPGKKKKSQIQEYVEYHGGAGVQHIAL-------NTEDIIEAIRGLRARGGEFLSPPSTYYQNLKERLSTSIRK  308 (381)
T ss_pred             EeccCCCCCCccHHHHHHHHHhcCCCceeeeee-------cchHHHHHHHHHHhcCCccccCCHHHHHhHHHHhhhhhhh
Confidence                               3344 445777763       467777777778777753221           0       


Q ss_pred             -----------CCeEEeCCCcceEeeeecccceeEEecCCcEeeeccceEeeeeeccCCCCCCCChhhhhhhccccCcCC
Q 016952          292 -----------GGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEV  360 (380)
Q Consensus       292 -----------GG~IkgSP~glLrQSSt~Ad~~~v~F~DG~~~~IPgsfyEFaeR~~lp~~~~~~~~el~~~~~~~GF~a  360 (380)
                                 |=.|-.-..|.|.|-.|+..--           -|--|+|++||.   +              .+||-+
T Consensus       309 vked~~~l~el~ILvD~De~gyLLQIFTKplqd-----------rpTlFlEiIQR~---n--------------~~GFGa  360 (381)
T KOG0638|consen  309 VKEDIKLLEELGILVDFDENGYLLQIFTKPLQD-----------RPTLFLEIIQRQ---N--------------HEGFGA  360 (381)
T ss_pred             hhccHHHHHHcCeEEecCCCcEEeeeeccccCC-----------CchHHHHHHHHh---c--------------ccccCc
Confidence                       0011112235555555554321           266799999998   2              589999


Q ss_pred             CChhHHHHhhhhhhhhh
Q 016952          361 GNADKIFESTSKEQLTR  377 (380)
Q Consensus       361 ~NAdkIFEST~~~~~~~  377 (380)
                      ||=..+|+|--.+|+.|
T Consensus       361 GNfkaLf~siEeEQ~~r  377 (381)
T KOG0638|consen  361 GNFKALFKSIEEEQTKR  377 (381)
T ss_pred             ccHHHHHHHHHHHHHhh
Confidence            99999999988777665

>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A

Probab=81.04  E-value=0.72  Score=37.81  Aligned_cols=32  Identities=22%  Similarity=0.536  Sum_probs=28.8

Q ss_pred             cCCCCcccceecccccccCCCHHHHHHHHHHCCCccccC
Q 016952          253 NGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSE  291 (380)
Q Consensus       253 ~Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~  291 (380)
                      .|..+||+++       .++||+++.+.|+++|+++..+
T Consensus        65 ~~~gi~Hia~-------~v~D~d~~~~~l~~~G~~~~~~   96 (109)
T PF13669_consen   65 GGGGIHHIAF-------EVDDLDAAIARLEAQGFRVLDE   96 (109)
T ss_dssp             TSSEEEEEEE-------EESHHHHHHHHHHHTTECEEEC
T ss_pred             CCCCEEEEEE-------EeCCHHHHHHHHHHCCCEEccc
Confidence            6889999997       6679999999999999998775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	380
3lho_A	267	Crystal Structure Of Putative Hydrolase (Yp_751971.		2e-27
3iuz_A	340	Crystal Structure Of Putative Glyoxalase Superfamil		2e-06

>pdb|3LHO|A Chain A, Crystal Structure Of Putative Hydrolase (Yp_751971.1) From Shewanella Frigidimarina Ncimb 400 At 1.80 A Resolution Length = 267

Iteration: 1
 Score =  119 bits (299), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/274 (33%), Positives = 134/274 (48%), Gaps = 40/274 (14%)
Query: 112 YLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGLKRL---ALLEGLVDVYLLSICDVTF 168
           Y+   P+A  + +L+       I  DHIA RTF + ++    L +    +  +   D  F
Sbjct: 17  YIKXTPSAAKIHQLLGHGA--PIINDHIALRTFNIAKVNLSVLAKHFTSIGYVDSGDYKF 74
Query: 169 S--------FHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAAL 220
                    F +PD         P+VFISELLV++ SP++Q+ I    +     +   A 
Sbjct: 75  EQKKLIAKHFEHPDPKQ------PKVFISELLVEEFSPEVQKSIHGLID-----QVDIAA 123
Query: 221 ASALGSLTWGKPL---YSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSL 277
            +A   +  G+      + +Q L  ESEYAAW    GY  NH T+SI+ L  +   I+ +
Sbjct: 124 TTADNFIYSGRHWDVDKATYQALLAESEYAAWVAALGYRANHFTVSINDL-PEFERIEDV 182
Query: 278 NQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLV 337
           NQ ++  GF LNS GG +K SP+ LL QSST AD     F+DG  E +P  + EFA R  
Sbjct: 183 NQALKQAGFVLNSSGGEVKGSPEVLLEQSSTXADKVVVNFTDGDVE-IPSCFYEFARR-- 239
Query: 338 LPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTS 371
                  P A  + +    GF   +ADKIFEST+
Sbjct: 240 ------YPXANGQLY---TGFVAASADKIFESTN 264

>pdb|3IUZ|A Chain A, Crystal Structure Of Putative Glyoxalase Superfamily Protein (Yp_299723.1) From Ralstonia Eutropha Jmp134 At 1.90 A Resolution Length = 340

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 115/311 (36%), Gaps = 76/311 (24%)
Query: 110 AVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGLK-RLALLEG-------------- 154
           A  L+R PT +A  + V ++G   + +DH A RT   +   AL EG              
Sbjct: 55  AGILDRVPTGRAYTDDVAATGG-XVVFDHGALRTVXWRDNGALPEGEAAFTRILRPLGYR 113
Query: 155 LVDVYLLS-ICDVTFSFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGS 213
           L   Y L  I     S+ + D   G+     + F+SE   ++ S   +E + + T     
Sbjct: 114 LNGNYPLDRISXTGRSYAHADAPEGI----AQFFVSEFHPERFSDAFREAVGRVT----- 164
Query: 214 GKKHAALASALGSLTW----------------------------GKPLYSEFQQLARESE 245
           G     L     +L W                            G P  ++++ L RES 
Sbjct: 165 GNSADPLTPRAQTLLWQLDRDGVLTVADGAELIGLLVPCFERQHGVPRLADYETLLRESA 224
Query: 246 YAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQ 305
             AW    G A NH T  +  +        +L +   D           ++VS  G + Q
Sbjct: 225 EXAWIATEGNAFNHATDRVDDVFGLSEQQXALGRPXXDX----------VEVSGSGRVXQ 274
Query: 306 SSTVADSFPFCF----SDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRD-GFEV 360
           ++  AD+    F     + V   VP S+ EF  R    ++ + P A      R D GF+ 
Sbjct: 275 TAFRADTVRRQFIGAQGETVERDVPGSFYEFITR---DRFADAPAAS----PRVDLGFDA 327
Query: 361 GNADKIFESTS 371
           GNA  IF  T+
Sbjct: 328 GNAQGIFXXTA 338

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	380
3lho_A	267	Putative hydrolase; structural genomics, joint cen	8e-81
3iuz_A	340	Putative glyoxalase superfamily protein; struct ge	4e-64
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>3lho_A Putative hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: PG4; 1.80A {Shewanella frigidimarina} Length = 267

 Score =  247 bits (632), Expect = 8e-81
 Identities = 88/286 (30%), Positives = 128/286 (44%), Gaps = 32/286 (11%)

Query: 96  GGESFFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFG--------LK 147
           G  +    +  ++   Y+   P+A  + +L+       I  DHIA RTF         L 
Sbjct: 1   GMHTDVNALFAALWQDYIKMTPSAAKIHQLLGH--GAPIINDHIALRTFNIAKVNLSVLA 58

Query: 148 RLALLEG--LVDVYLLSICDVTFSFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIR 205
           +     G      Y      +    H+       +   P+VFISELLV++ SP++Q+ I 
Sbjct: 59  KHFTSIGYVDSGDYKFEQKKLIA-KHF----EHPDPKQPKVFISELLVEEFSPEVQKSIH 113

Query: 206 KYTETSGSGKKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIH 265
              +        A   + + S        + +Q L  ESEYAAW    GY  NH T+SI+
Sbjct: 114 GLIDQVDIAATTAD--NFIYSGRHWDVDKATYQALLAESEYAAWVAALGYRANHFTVSIN 171

Query: 266 HLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESV 325
            L  +   I+ +NQ ++  GF LNS GG +K SP+ LL QSST+AD     F+DG    +
Sbjct: 172 DLP-EFERIEDVNQALKQAGFVLNSSGGEVKGSPEVLLEQSSTMADKVVVNFTDG-DVEI 229

Query: 326 PCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTS 371
           P  + EFA R  +                  GF   +ADKIFEST+
Sbjct: 230 PSCFYEFARRYPMA-----------NGQLYTGFVAASADKIFESTN 264

>3iuz_A Putative glyoxalase superfamily protein; struct genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: MLY P6G PGE; 1.90A {Ralstonia eutropha} Length = 340

 Score =  207 bits (527), Expect = 4e-64
 Identities = 66/314 (21%), Positives = 106/314 (33%), Gaps = 62/314 (19%)

Query: 100 FFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTF----------GLKRL 149
             + +   + A  L+R PT +A  + V ++G   + +DH A RT           G    
Sbjct: 45  IAQALNMVLFAGILDRVPTGRAYTDDVAATGGX-VVFDHGALRTVXWRDNGALPEGEAAF 103

Query: 150 A-LLEGL----VDVYLLSICDVTFSFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEII 204
             +L  L       Y L    +T    Y    +     + + F+SE   ++ S   +E +
Sbjct: 104 TRILRPLGYRLNGNYPLDRISMTG-RSYAHADA--PEGIAQFFVSEFHPERFSDAFREAV 160

Query: 205 RKYTE-----------------------TSGSGKKHAALASALGSLTWGKPLYSEFQQLA 241
            + T                        T   G +   L         G P  ++++ L 
Sbjct: 161 GRVTGNSADPLTPRAQTLLWQLDRDGVLTVADGAELIGLLVPCFERQHGVPRLADYETLL 220

Query: 242 RESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDG 301
           RES   AW    G A NH T  +         +  L++     G  +      ++VS  G
Sbjct: 221 RESAEMAWIATEGNAFNHATDRVDD-------VFGLSEQQXALGRPM---XDXVEVSGSG 270

Query: 302 LLLQSSTVADSFPFCFSDG----VTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDG 357
            + Q++  AD+    F       V   VP S+ EF  R                     G
Sbjct: 271 RVXQTAFRADTVRRQFIGAQGETVERDVPGSFYEFITRDRFADA------PAASPRVDLG 324

Query: 358 FEVGNADKIFESTS 371
           F+ GNA  IF  T+
Sbjct: 325 FDAGNAQGIFXMTA 338

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 47/333 (14%), Positives = 98/333 (29%), Gaps = 107/333 (32%)

Query: 30  LHSLAPSSSSSSSSSCLP------LQPKSRNFISLKPSAPFHGNSSVPLQKRNLSVVSAS 83
           L+ + P+ +S S  S         +Q + R  +  KP    + N         L V+   
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP----YENC--------LLVL--- 250

Query: 84  KSDD-RDPS--SSFQGGESFFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIA 140
              + ++    ++F       + +L +       R    K V + + ++    I  DH  
Sbjct: 251 --LNVQNAKAWNAFNLS---CKILLTT-------RF---KQVTDFLSAATTTHISLDH-- 293

Query: 141 FRTFGLKRLALLEGLVDVYLLSICDVTFSFHYPDGGSGVNGPLPR--VFISELLVDQMSP 198
                         L    + S+          D        LPR  +  +   +  ++ 
Sbjct: 294 ----------HSMTLTPDEVKSLLLKYLDCRPQD--------LPREVLTTNPRRLSIIAE 335

Query: 199 QIQE-IIR-KYTETSGSGKKHAALASALGSLT---------------------------- 228
            I++ +      +     K    + S+L  L                             
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395

Query: 229 WGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHL----KSQLNNIKSLNQFIEDN 284
           W   + S+   +   ++   ++LV        TISI  +    K +L N  +L++ I   
Sbjct: 396 WFDVIKSDVMVVV--NKLHKYSLVEKQPKES-TISIPSIYLELKVKLENEYALHRSI--- 449

Query: 285 GFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCF 317
              ++          D L+       D + +  
Sbjct: 450 ---VDHYNIPKTFDSDDLIPPY---LDQYFYSH 476

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	380
3lho_A	267	Putative hydrolase; structural genomics, joint cen	100.0
3iuz_A	340	Putative glyoxalase superfamily protein; struct ge	100.0
2rjb_A	455	Uncharacterized protein; structural genomics, PSI-	100.0
1cjx_A	357	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	97.62
2r5v_A	357	PCZA361.1; dioxygenase, non-heme iron, vancomycin,	97.56
1t47_A	381	4-hydroxyphenylpyruvate dioxygenase; triketone inh	97.46
3isq_A	393	4-hydroxyphenylpyruvate dioxygenase; tyrosine meta	96.97
1sqd_A	424	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	95.81
1sp8_A	418	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	95.74
3gm5_A	159	Lactoylglutathione lyase and related lyases; sheet	82.65

>3lho_A Putative hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: PG4; 1.80A {Shewanella frigidimarina}

Probab=100.00  E-value=2.1e-89  Score=655.67  Aligned_cols=252  Identities=35%  Similarity=0.553  Sum_probs=226.8

Q ss_pred             hHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhcCCCcccccceeeeecCCCccch---hhHHHhcCCeecceeee------
Q 016952           98 ESFFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGLKRLAL---LEGLVDVYLLSICDVTF------  168 (380)
Q Consensus        98 ~~~Lr~~f~~Lw~~Y~~~vP~a~~i~~lv~~~~g~~i~nDHiAfRT~~~~~~Gi---ar~F~~LGY~~~G~Y~F------  168 (380)
                      .++++++|++||++|+++||++++|++++.  .|++|+|||||||||+++++|+   +++|++|||+++|+|+|      
T Consensus         3 ~~~~~~l~~~Lw~~Y~~~~P~a~~i~~l~~--~~~~i~nDHiA~RT~~~~~~gi~~la~~F~~lGY~~~G~Y~f~~kkL~   80 (267)
T 3lho_A            3 HTDVNALFAALWQDYIKMTPSAAKIHQLLG--HGAPIINDHIALRTFNIAKVNLSVLAKHFTSIGYVDSGDYKFEQKKLI   80 (267)
T ss_dssp             CSCHHHHHHHHHHHHHHHCHHHHHHHHHHH--TTSCCCEEEEEEEEESCGGGCHHHHHHHHHTTTCEEEEEEEETTTTEE
T ss_pred             cccHHHHHHHHHHHHHHHCCCHHHHHHHHh--cCCceecceEEEEecCCCCccHHHHHHHHHHcCCeEcceeccCCCccE
Confidence            467899999999999999999999999997  5788999999999999999999   99999999999999999      


Q ss_pred             --eecCCCCCCCCCCCCCeEEeeccccCcCCHHHHHHHHHHHhhcCCCchHHHHHHHhcCCCCCCCCHHHHHHHHHhhhh
Q 016952          169 --SFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQLARESEY  246 (380)
Q Consensus       169 --~f~pp~~~l~~~g~~PRVFISEL~vd~lS~~~q~iI~~lv~~~~~~~~~~~l~~~~~~~~W~~ps~adYe~L~~ESey  246 (380)
                        ||+||++      ++||||||||+||+||+++|++|+++|++.++....+ .++++++++|+ |+++||++|++||||
T Consensus        81 A~~f~hpd~------~~prvFiSEL~ve~lS~~~q~~i~~~v~~~~~~~l~a-~~f~~~~~~W~-p~~~~Y~~L~~ese~  152 (267)
T 3lho_A           81 AKHFEHPDP------KQPKVFISELLVEEFSPEVQKSIHGLIDQVDIAATTA-DNFIYSGRHWD-VDKATYQALLAESEY  152 (267)
T ss_dssp             EEEEECSST------TSCEEEEEEECGGGSCHHHHHHHHHHHTTSCGGGGGS-TTGGGCBCCSC-CCHHHHHHHHHHCHH
T ss_pred             EEEeCCCCC------CCCeEEEeeccHhhCCHHHHHHHHHHHhccChhhcch-hhhhhcCCCCC-CCHHHHHHHHHhChH
Confidence              9999996      6999999999999999999999999999977543322 34678899999 999999999999999


Q ss_pred             hhHhhhcCCCCcccceecccccccCCCHHHHHHHHHHCCCccccCCCeEEeCCCcceEeeeecccceeEEecCCcEeeec
Q 016952          247 AAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVP  326 (380)
Q Consensus       247 AAWIa~~Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~GG~IkgSP~glLrQSSt~Ad~~~v~F~DG~~~~IP  326 (380)
                      ||||++|||++||||++||+|+ +++||++||++|+++|++||++||+|||||+++||||||+|++++|+|.||+ +.||
T Consensus       153 aAWv~~~G~~~NH~T~~v~~L~-~~~dI~~v~~~l~~~G~~~n~~Gg~Ikgsp~~lLrQtSt~A~~~~v~F~dg~-~~ip  230 (267)
T 3lho_A          153 AAWVAALGYRANHFTVSINDLP-EFERIEDVNQALKQAGFVLNSSGGEVKGSPEVLLEQSSTMADKVVVNFTDGD-VEIP  230 (267)
T ss_dssp             HHHHHHHCBSCSEEEEETTTCT-TCCCHHHHHHHHHHTTCCBCCTTCSSEEEGGGTEEEEEBCCCEEEEEETTEE-EEEE
T ss_pred             HHHHhhcCCccceeehhhcccC-CCCCHHHHHHHHHHcCCCcccCCCEEEECCCCcEEEEEccccceeEEecCCc-eecC
Confidence            9999999999999999999998 8999999999999999999999999999999999999999999999999997 5699


Q ss_pred             cceEeeeeeccCCCCCCCChhhhhhhccccCcCCCChhHHHHhhhh
Q 016952          327 CSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTSK  372 (380)
Q Consensus       327 gsfyEFaeR~~lp~~~~~~~~el~~~~~~~GF~a~NAdkIFEST~~  372 (380)
                      |||||||||+++|+|      +     ||+||+++|||||||||+.
T Consensus       231 g~fyEFa~R~~~~~~------~-----l~~gF~a~nAdkIFesT~~  265 (267)
T 3lho_A          231 SCFYEFARRYPMANG------Q-----LYTGFVAASADKIFESTNA  265 (267)
T ss_dssp             CCCCEEEEECBCTTS------S-----BCCCSSCC-----------
T ss_pred             ceEEEEEEeccCCcc------c-----cccccccccchhHHHhhhc
Confidence            999999999999985      3     5999999999999999985

>3iuz_A Putative glyoxalase superfamily protein; struct genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: MLY P6G PGE; 1.90A {Ralstonia eutropha}

Probab=100.00  E-value=2.7e-78  Score=595.12  Aligned_cols=252  Identities=24%  Similarity=0.320  Sum_probs=210.8

Q ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHhcCCCcccccceeeeecCCCcc-----ch---hhHHHhcCCeecceeee---
Q 016952          100 FFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGLKRL-----AL---LEGLVDVYLLSICDVTF---  168 (380)
Q Consensus       100 ~Lr~~f~~Lw~~Y~~~vP~a~~i~~lv~~~~g~~i~nDHiAfRT~~~~~~-----Gi---ar~F~~LGY~~~G~Y~F---  168 (380)
                      +...+...||++|+++||++++|++.+.. .|++|+|||||||||+++++     |+   +++|++|||+++|+|+|   
T Consensus        45 ~a~~l~~~Lw~~Y~~r~P~a~~~v~~~~~-~g~~i~nDHiA~RT~~~~~~g~l~~gl~~lariF~~lGy~p~G~Ydl~~k  123 (340)
T 3iuz_A           45 IAQALNMVLFAGILDRVPTGRAYTDDVAA-TGGXVVFDHGALRTVXWRDNGALPEGEAAFTRILRPLGYRLNGNYPLDRI  123 (340)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHH-TTCCBCEEEEEEEEECCSCCTTSCSTTHHHHHHHHHHTEEEEEEEEEGGG
T ss_pred             HHHHHHHHHHHHHHHHCCcHHHHHHHHHh-CCCCeecceeEEEeeecCCcCcCchhHHHHHHHHHHcCCeEcceeccCCC
Confidence            44556666999999999999997777664 67889999999999999998     66   99999999999999999   


Q ss_pred             -----eecCCCCCCCCCCCCCeEEeeccccCcCCHHHHHHHHHHHhhcCCCch---------------------HHHHHH
Q 016952          169 -----SFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSGKK---------------------HAALAS  222 (380)
Q Consensus       169 -----~f~pp~~~l~~~g~~PRVFISEL~vd~lS~~~q~iI~~lv~~~~~~~~---------------------~~~l~~  222 (380)
                           ||+||+..    .++||||||||++|+||+++|++|+++++++.+..+                     .+++..
T Consensus       124 ~l~a~afrp~d~~----~~~pRVF~SeL~~e~ls~~lq~~i~~~l~~~~~~~~~~~~~ll~~~e~~g~l~~~~a~~~l~~  199 (340)
T 3iuz_A          124 SMTGRSYAHADAP----EGIAQFFVSEFHPERFSDAFREAVGRVTGNSADPLTPRAQTLLWQLDRDGVLTVADGAELIGL  199 (340)
T ss_dssp             TEEEEEEEETTCT----TTSCEEEEEEECCTTSCHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHSEECHHHHHHHHHH
T ss_pred             CCeEEEecCCCCC----CCCCeEEEeecchhhCCHHHHHHHHHHHhhccCCCCHhHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence                 99999942    379999999999999999999999999999844221                     355667


Q ss_pred             HhcCCC--CCCCCHHHHHHHHHhhhhhhHhhhcCCCCcccceecccccccCCCHHHHHHHHHHCCCccccCCCeEEeCCC
Q 016952          223 ALGSLT--WGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPD  300 (380)
Q Consensus       223 ~~~~~~--W~~ps~adYe~L~~ESeyAAWIa~~Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~GG~IkgSP~  300 (380)
                      ++++|.  |++|+++||++|++||||||||++|||++||||       +|+.||++||++|+++||+||+.   |||||+
T Consensus       200 ~l~~F~~~w~~~s~~~Y~~L~~eS~~AAWva~~G~~iNHlT-------~rv~DId~v~~~m~~~G~~~k~~---IeGsP~  269 (340)
T 3iuz_A          200 LVPCFERQHGVPRLADYETLLRESAEMAWIATEGNAFNHAT-------DRVDDVFGLSEQQXALGRPMXDX---VEVSGS  269 (340)
T ss_dssp             HGGGSSCCSCCCBHHHHHHHHHHCHHHHHHHHHTTSCSEEE-------EECSCHHHHHHHHHHTTCCBCSC---CEECTT
T ss_pred             HHHHhcCCCCCCCHHHHHHHHHhChHHhhhhhcCCcccccc-------CCcCCHHHHHHHHHHcCCChhhh---hcCCcc
Confidence            777775  999999999999999999999999999999999       68999999999999999999998   999999


Q ss_pred             cceEeeeecccceeEEecC--Cc--EeeeccceEeeeeeccCCCCCCCChhhhhhhccccCcCCCChhHHHHhhhh
Q 016952          301 GLLLQSSTVADSFPFCFSD--GV--TESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTSK  372 (380)
Q Consensus       301 glLrQSSt~Ad~~~v~F~D--G~--~~~IPgsfyEFaeR~~lp~~~~~~~~el~~~~~~~GF~a~NAdkIFEST~~  372 (380)
                      ++||||||+|++++|+|.|  |.  +..||||||||+||+++++      .+-++++||+||++||||||||||++
T Consensus       270 ~lLrQTSf~A~~e~v~F~d~~G~~v~~~ip~~F~EfaqR~~~~~------~~gr~~~lydgF~~~nAd~IFesT~~  339 (340)
T 3iuz_A          270 GRVXQTAFRADTVRRQFIGAQGETVERDVPGSFYEFITRDRFAD------APAASPRVDLGFDAGNAQGIFXMTAA  339 (340)
T ss_dssp             SSEEEEEBCCCEEEEEEECTTSCEEEEEEECCEEEEEEECBC--------------CBCCCCCCC-----------
T ss_pred             cceeeeeccccceEEEEecCCCceeeeeeeeEEEEeeecccccC------cccchhhhhhccccccccchhhhccC
Confidence            9999999999999999977  52  5679999999999999886      35567789999999999999999974

>2rjb_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Shigella flexneri}

Probab=100.00  E-value=8e-48  Score=385.76  Aligned_cols=226  Identities=18%  Similarity=0.213  Sum_probs=202.5

Q ss_pred             chHHHHHHHHH-HHHHHHHhCCcHHHHHHHHHhcCCCc------c---cccceeeeecCCCccch------------hhH
Q 016952           97 GESFFRTVLQS-MEAVYLNRNPTAKAVLELVQSSGNNQ------I---CYDHIAFRTFGLKRLAL------------LEG  154 (380)
Q Consensus        97 ~~~~Lr~~f~~-Lw~~Y~~~vP~a~~i~~lv~~~~g~~------i---~nDHiAfRT~~~~~~Gi------------ar~  154 (380)
                      .-..+|..|.+ ||+||.++||.+++++++|.++|..+      +   .+||+++++++++++|+            +|+
T Consensus         6 ~~d~~Ra~Fa~Ams~MY~~EVPlY~~Llelv~~vn~~vl~~~~~~~~~~~~~g~l~Rl~~ERHGAIR~Gt~~ELa~~~Ri   85 (455)
T 2rjb_A            6 TADEIREQFSQAMSAMYQQEVPQYGTLLELVADVNLAVLENNPQLHEKMVNADELARLNVERHGAIRVGTAQELATLRRM   85 (455)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCTTGGGTCEEEEEEESCHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHhcCchhhhhhhhcCcchhccccccCCcCCCCHHHHHHHHHH
Confidence            34679999988 99999999999999999999864332      2   36799999999999887            899


Q ss_pred             HHhcCCeecceeee----------eecCCCCCCCCCCCCCeEEeeccccCcCC-HHHHHHHHHHHhhcCC----------
Q 016952          155 LVDVYLLSICDVTF----------SFHYPDGGSGVNGPLPRVFISELLVDQMS-PQIQEIIRKYTETSGS----------  213 (380)
Q Consensus       155 F~~LGY~~~G~Y~F----------~f~pp~~~l~~~g~~PRVFISEL~vd~lS-~~~q~iI~~lv~~~~~----------  213 (380)
                      |..|||+|+|+|++          +|+|.+++ ++..|+||||+|+|++|+++ +++|+.+++++++++.          
T Consensus        86 Fa~mGm~pvGyYdL~~agvPvhstAFRp~d~~-~La~nPFRvFtSlLr~el~~d~~lr~~a~~iL~~R~iftpr~~~Ll~  164 (455)
T 2rjb_A           86 FAIMGMYPVSYYDLSQAGVPVHSTAFRPIDDA-SLARNPFRVFTSLLRLELIENEILRQKAAEILRQRDIFTPRCRQLLE  164 (455)
T ss_dssp             HHTTTCEEEEEECGGGGTCSEEEEEEECCSHH-HHHHCCCEEEEEEECGGGCSSHHHHHHHHHHHHTCCCSCHHHHHHHH
T ss_pred             HHHcCCcccccccCcccCCCceeeeeccCCHH-HHhcCCceeeeeccchhhcCCHHHHHHHHHHHhcccCCCHHHHHHHH
Confidence            99999999999999          99999853 45567999999999999998 9999999999997662          


Q ss_pred             ------Cch----HHHHHHHhcCCCCC---CCCHHHHHHHHHhhhhhhHhhhc-CCCCcccceecccccccCCCHHHHHH
Q 016952          214 ------GKK----HAALASALGSLTWG---KPLYSEFQQLARESEYAAWTLVN-GYAVNHVTISIHHLKSQLNNIKSLNQ  279 (380)
Q Consensus       214 ------~~~----~~~l~~~~~~~~W~---~ps~adYe~L~~ESeyAAWIa~~-Gy~~NH~TisVn~L~~r~~DIe~vn~  279 (380)
                            +++    .+++.+++.+|.|+   +|+.+||++|.+||+++|||+++ |.|+||+|       ||+.||++|++
T Consensus       165 ~~e~~ggL~~~~A~~fv~~al~~F~w~~~a~v~~~~Y~~L~~~h~~~AdI~~f~g~hiNHLT-------pRvlDId~vq~  237 (455)
T 2rjb_A          165 EYEQQGGFNETQAQEFVQEALETFRWHQLATVDEETYRALHNEHRLIADVVCFPGCHINHLT-------PRTLDIDRVQS  237 (455)
T ss_dssp             HHHHHSSCBHHHHHHHHHHHHHHHCCCSBCSSCHHHHHHHHHHCHHHHHHHSSSSCCCSEEE-------EBCSCHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHhhHHhhhhhccCCcccccCC-------CcccCHHHHHH
Confidence                  233    47788999999998   89999999999999999999966 99999999       99999999999


Q ss_pred             HHHHCCCccccCCCeEEeCCCc----ceEeeeecccceeEEecCCcEeeeccc----eEeeeeecc
Q 016952          280 FIEDNGFRLNSEGGVLKVSPDG----LLLQSSTVADSFPFCFSDGVTESVPCS----YIEFAERLV  337 (380)
Q Consensus       280 ~Lk~~G~~ln~~GG~IkgSP~g----lLrQSSt~Ad~~~v~F~DG~~~~IPgs----fyEFaeR~~  337 (380)
                      .|+++|++||+.   |||+|.+    |||||||+|+.++|.|.++    +||+    ||||+||+.
T Consensus       238 ~M~~~Gi~~K~~---IEgpp~r~~PILLRQTSFkAl~e~~~F~~~----~~GshtaRFgEieqRG~  296 (455)
T 2rjb_A          238 MMPECGIEPKIL---IEGPPRREVPILLRQTSFKALEETVLFAGQ----KQGTHTARFGEIEQRGV  296 (455)
T ss_dssp             HTGGGTCCCCSC---CBSSCCCSSCBSEEEEEEEEEEEEEEETTE----EEEEEEEEEEEEEEECB
T ss_pred             HHHHcCCCcccc---eeCCCCCCCCeeeeecccccccccccccCC----CCCceeeeeeeeeeccc
Confidence            999999999999   9999995    6999999999999999755    6888    999999995

>1cjx_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase, iron; 2.40A {Pseudomonas fluorescens} SCOP: d.32.1.3 d.32.1.3

Probab=97.62  E-value=7.7e-05  Score=72.02  Aligned_cols=88  Identities=32%  Similarity=0.500  Sum_probs=66.8

Q ss_pred             cCCCCcccceecccccccCCCHHHHHHHHHHCCCccccC-C--------------C-----------eEEeC----CCcc
Q 016952          253 NGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSE-G--------------G-----------VLKVS----PDGL  302 (380)
Q Consensus       253 ~Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~-G--------------G-----------~IkgS----P~gl  302 (380)
                      .|..++|+++       .+.||+++.+.|+++|+++-.. -              |           .+-..    |+|.
T Consensus       234 ~g~g~~HiAf-------~v~Di~~~~~~L~~~Gv~~~~~~p~~Yy~~l~~r~~~~~~~~~~l~~~~il~d~d~~~~~~g~  306 (357)
T 1cjx_A          234 NGEGIQHVAF-------LTDDLVKTWDALKKIGMRFMTAPPDTYYEMLEGRLPDHGEPVDQLQARGILLDGSSVEGDKRL  306 (357)
T ss_dssp             TSSBCCEEEE-------EESCHHHHHHHHHHTTCCBCCCCCHHHHHTHHHHSTTCCCCHHHHHHHTCEEEEEEETTEEEE
T ss_pred             CCCCeeEEEE-------EcCCHHHHHHHHHHcCCcccCCCChHHHHHHHHHhccccccHHHHHHcCeEEecCCCCCCCCe
Confidence            4667999997       6679999999999999987541 0              1           12233    5677


Q ss_pred             eEeeeecccceeEEecCCcEeeeccceEeeeeeccCCCCCCCChhhhhhhccccCcCCCChhHHHHhhhhhhhhh
Q 016952          303 LLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTSKEQLTR  377 (380)
Q Consensus       303 LrQSSt~Ad~~~v~F~DG~~~~IPgsfyEFaeR~~lp~~~~~~~~el~~~~~~~GF~a~NAdkIFEST~~~~~~~  377 (380)
                      |.|-.|....       |     | -|+|++||.    +             ++||-+||+..+||+.-.+|..|
T Consensus       307 llqift~~~~-------~-----~-~f~E~iqr~----~-------------~~gfg~~n~~~l~~~~e~~q~~r  351 (357)
T 1cjx_A          307 LLQIFSETLM-------G-----P-VFFEFIQRK----G-------------DDGFGEGNFKALFESIERDQVRR  351 (357)
T ss_dssp             EEEEEBCCCB-------T-----T-BEEEEEEEE----B-------------CCSCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccCCC-------C-----c-eEEEEEEEc----C-------------cCccccccHHHHHHHHHHHHHHh
Confidence            7777654431       1     4 699999999    2             69999999999999999888776

>2r5v_A PCZA361.1; dioxygenase, non-heme iron, vancomycin, oxidoreductase; HET: HHH; 2.30A {Amycolatopsis orientalis}

Probab=97.56  E-value=0.00012  Score=70.04  Aligned_cols=97  Identities=16%  Similarity=0.220  Sum_probs=70.3

Q ss_pred             hhhHhhh-cCCCCcccceecccccccCCCHHHHHHHHHHCCCccccC-------------------------CCeEEeCC
Q 016952          246 YAAWTLV-NGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSE-------------------------GGVLKVSP  299 (380)
Q Consensus       246 yAAWIa~-~Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~-------------------------GG~IkgSP  299 (380)
                      ...++.. .|-.++|+++       .+.||+++.+.|+++|+++-..                         +=.+-.-|
T Consensus       227 ~~~~~~~~~~~g~~Hiaf-------~v~Di~~~~~~L~~~Gv~~~~~p~~yy~~~~~r~~~~~~~~~~~~~~~~l~~~Dp  299 (357)
T 2r5v_A          227 IDEFLKDHQGAGVQHIAF-------NSNDAVRAVKALSERGVEFLKTPGAYYDLLGERITLQTHSLDDLRATNVLADEDH  299 (357)
T ss_dssp             HHHHHHHHTSSEEEEEEE-------ECSCHHHHHHHHHHTTCCBCCCCHHHHHTTTTTCCCSSSCHHHHHHHTCEEEEET
T ss_pred             hHHHHHhcCCCCccEEEE-------EcCCHHHHHHHHHHcCCCcCCCchhHHHHHHHhhccchhhHHHHHHcCeEEecCC
Confidence            3344433 2457889887       6789999999999999975432                         01222357


Q ss_pred             CcceEeeeecccceeEEecCCcEeeeccceEeeeeeccCCCCCCCChhhhhhhccccCcCCCChhHHHHhhhhhhhhh
Q 016952          300 DGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTSKEQLTR  377 (380)
Q Consensus       300 ~glLrQSSt~Ad~~~v~F~DG~~~~IPgsfyEFaeR~~lp~~~~~~~~el~~~~~~~GF~a~NAdkIFEST~~~~~~~  377 (380)
                      +|.|.|-.|....      |+     |+-|+|++||.    +             ++||-++|+..+||+.-.+|..|
T Consensus       300 ~G~llqi~t~~~~------~~-----~~~f~e~i~r~----~-------------~~gfg~~n~~~l~~~~e~~~~~~  349 (357)
T 2r5v_A          300 GGQLFQIFTASTH------PR-----HTIFFEVIERQ----G-------------AGTFGSSNIKALYEAVELERTGQ  349 (357)
T ss_dssp             TEEEEEEEBCCCS------TT-----SCCEEEEEEEE----B-------------CCSCCHHHHHHHHHHHHHHHHC-
T ss_pred             CceEEEEEccCCC------CC-----CeEEEEEEEEc----C-------------CCccccccHHHHHHHHHHHHHHh
Confidence            8888887775321      21     67799999998    2             69999999999999998888665

>1t47_A 4-hydroxyphenylpyruvate dioxygenase; triketone inhibitor, iron, oxidoreductase; HET: NTD; 2.50A {Streptomyces avermitilis} SCOP: d.32.1.3 d.32.1.3

Probab=97.46  E-value=0.00019  Score=70.22  Aligned_cols=90  Identities=28%  Similarity=0.384  Sum_probs=68.7

Q ss_pred             CCCCcccceecccccccCCCHHHHHHHHHHCCCccccC------------------------CC-eEEeCCCcceEeeee
Q 016952          254 GYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSE------------------------GG-VLKVSPDGLLLQSST  308 (380)
Q Consensus       254 Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~------------------------GG-~IkgSP~glLrQSSt  308 (380)
                      |..++|+++       ++.||++..+.|+++|+++-..                        -| .|-.-|+|.|.|-.|
T Consensus       265 g~Gv~HiAf-------~vdDi~~~~~~L~~~Gv~~~~~p~~Yy~~l~~R~~~~~~~~~~l~~~~il~d~d~~g~llqift  337 (381)
T 1t47_A          265 GAGVQHIAL-------NTGDIVETVRTMRAAGVQFLDTPDSYYDTLGEWVGDTRVPVDTLRELKILADRDEDGYLLQIFT  337 (381)
T ss_dssp             SCEEEEEEE-------ECSCHHHHHHHHHHTTCCBCCCCGGGTTSHHHHHCCCSSCHHHHHHHTCEEEECSSCEEEEEEB
T ss_pred             CCCcceEEE-------ecCCHHHHHHHHHHcCCccCCCCccHHHHHHHhccccchhHHHHHHhCeEEeeCCCCeEEEEec
Confidence            667899987       6789999999999999986431                        01 233567888999877


Q ss_pred             cccceeEEecCCcEeeeccceEeeeeeccCCCCCCCChhhhhhhccccCcCCCChhHHHHhhhhhhhhhh
Q 016952          309 VADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTSKEQLTRR  378 (380)
Q Consensus       309 ~Ad~~~v~F~DG~~~~IPgsfyEFaeR~~lp~~~~~~~~el~~~~~~~GF~a~NAdkIFEST~~~~~~~~  378 (380)
                      ...      .|+     |+-|+||+||.    +             ++||-+||-..+|||--.+|..|-
T Consensus       338 ~~~------~~~-----pt~f~E~iqR~----g-------------~~gfg~gN~~alf~~ie~~q~~rg  379 (381)
T 1t47_A          338 KPV------QDR-----PTVFFEIIERH----G-------------SMGFGKGNFKALFEAIEREQEKRG  379 (381)
T ss_dssp             CCS------SSS-----SCCEEEEEEEE----B-------------CCCCSTHHHHHHHHHHHHHHHC--
T ss_pred             cCC------CCC-----CeeEEEEEEEc----C-------------CCccchhhHHHHHHHHHHHHHHhc
Confidence            432      122     67799999998    2             699999999999999988887763

>3isq_A 4-hydroxyphenylpyruvate dioxygenase; tyrosine metabolism, DIS mutation, iron, mental retardation, metal-binding, oxidored phenylalanine catabolism; 1.75A {Homo sapiens} PDB: 1sqi_A*

Probab=96.97  E-value=0.0013  Score=65.75  Aligned_cols=100  Identities=25%  Similarity=0.414  Sum_probs=77.8

Q ss_pred             hhhhhhHhhhc-CCCCcccceecccccccCCCHHHHHHHHHHCCCccccC------------CC----------------
Q 016952          243 ESEYAAWTLVN-GYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSE------------GG----------------  293 (380)
Q Consensus       243 ESeyAAWIa~~-Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~------------GG----------------  293 (380)
                      .|+.+.++..+ |-.++|+++       ++.||++..+.|+++|+++.+.            ++                
T Consensus       242 ~s~I~~fL~~~~G~Gi~HiA~-------~~dDi~~~~~~l~~~Gv~~l~~P~~YY~~l~~r~~~~~~~~~e~~~~l~~~~  314 (393)
T 3isq_A          242 KSQIQEYVDYNGGAGVQHIAL-------KTEDIITAIRHLRERGLEFLSVPSTYYKQLREKLKTAKIKVKENIDALEELK  314 (393)
T ss_dssp             CCHHHHHHHHHTSSEEEEEEE-------EESCHHHHHHHHHHTTCCBCCCCHHHHHHHHHHHTTCSSCCCSCHHHHHHHT
T ss_pred             CCHHHHHHHHcCCCCcceEEE-------EcCCHHHHHHHHHHcCCccCCCCccHHHHHHHHhccccccccccHHHHHhcC
Confidence            57788888876 778999997       7889999999999999976641            00                


Q ss_pred             -eEEeCCCcceEeeeecccceeEEecCCcEeeeccceEeeeeeccCCCCCCCChhhhhhhccccCcCCCChhHHHHhhhh
Q 016952          294 -VLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTSK  372 (380)
Q Consensus       294 -~IkgSP~glLrQSSt~Ad~~~v~F~DG~~~~IPgsfyEFaeR~~lp~~~~~~~~el~~~~~~~GF~a~NAdkIFEST~~  372 (380)
                       .|-+..+|.|.|-.|+...      |     =|.-|+||+||.    +             ++||=+||-..+|||=-.
T Consensus       315 IL~D~d~~g~llQifT~~~~------~-----rpt~FfEiIqR~----g-------------~~GFG~gNf~aLfeaiE~  366 (393)
T 3isq_A          315 ILVDYDEKGYLLQIFTKPVQ------D-----RPTLFLEVIQRH----N-------------HQGFGAGNFNSLFKAFEE  366 (393)
T ss_dssp             CEEEECSSCEEEEEEBCCSS------S-----SSCCEEEEEEEE----S-------------CCSCCHHHHHHHHHHHHH
T ss_pred             cEEccCCCceEEEEEeeccC------C-----CCceEEEEEEEc----C-------------CCccChhhHHHHHHHHHH
Confidence             1223445789998887632      1     166799999999    2             799999999999999887


Q ss_pred             hhhhh
Q 016952          373 EQLTR  377 (380)
Q Consensus       373 ~~~~~  377 (380)
                      +|..|
T Consensus       367 eq~~r  371 (393)
T 3isq_A          367 EQNLR  371 (393)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            77655

>1sqd_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 1.80A {Arabidopsis thaliana} SCOP: d.32.1.3 d.32.1.3 PDB: 1tfz_A* 1tg5_A* 1sp9_A

Probab=95.81  E-value=0.019  Score=57.44  Aligned_cols=112  Identities=22%  Similarity=0.319  Sum_probs=71.8

Q ss_pred             HhhhhhhHhhh-cCCCCcccceecccccccCCCHHHHHHHHHH----CCCccccCC------------C-----------
Q 016952          242 RESEYAAWTLV-NGYAVNHVTISIHHLKSQLNNIKSLNQFIED----NGFRLNSEG------------G-----------  293 (380)
Q Consensus       242 ~ESeyAAWIa~-~Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~----~G~~ln~~G------------G-----------  293 (380)
                      ..|+...++.. .|..++|+++       .+.||++..+.|++    +|+++-+.=            |           
T Consensus       269 ~~s~i~~fl~~~~G~G~~HIAf-------~vdDI~~a~~~L~~r~~~~Gv~~l~~pp~~YY~~l~~r~~~~~~~~~~~~l  341 (424)
T 1sqd_A          269 RKSQIQTYLEHNEGAGLQHLAL-------MSEDIFRTLREMRKRSSIGGFDFMPSPPPTYYQNLKKRVGDVLSDDQIKEC  341 (424)
T ss_dssp             -CCHHHHHHHHHTSCEEEEEEE-------EESCHHHHHHHHHHHGGGTSCCBCCCCCHHHHHHHHHHHTTTSCHHHHHHH
T ss_pred             CcchhhhhhhhcCCCCcCEEEE-------EeCCHHHHHHHHHhhhccCCcEEecCCCcchhHHHHHhhccccchhhHHHH
Confidence            34555666654 4778999997       67799999999999    899776531            1           


Q ss_pred             -----eEEeCCCcceEeeeecccceeEEecCCcEeeeccceEeeeeeccC-CCCCCCChhhhhhhccccCcCCCChhHHH
Q 016952          294 -----VLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVL-PQYKNLPEAEVKEFHRRDGFEVGNADKIF  367 (380)
Q Consensus       294 -----~IkgSP~glLrQSSt~Ad~~~v~F~DG~~~~IPgsfyEFaeR~~l-p~~~~~~~~el~~~~~~~GF~a~NAdkIF  367 (380)
                           .|-+-.+++|.|..|+...      |     =|.=|+||+||.-- -+.   ..++....---+||=.||=..+|
T Consensus       342 ~~~~IL~D~d~~g~llqift~~~~------~-----~pt~FfEiIqR~g~~~~~---~~~~~~~~~~~~gFG~gNf~aLf  407 (424)
T 1sqd_A          342 EELGILVDRDDQGTLLQIFTKPLG------D-----RPTIFIEIIQRVGCMMKD---EEGKAYQSGGCGGFGKGNFSELF  407 (424)
T ss_dssp             HHHTCEEEECSSEEEEEEEBCCSS------S-----SSCCEEEEEEEEECBC----------CBCTTTTCSSTTHHHHHH
T ss_pred             HHcCeEEecCCCCeEEEEEccccC------C-----CCceEEEEEEEcCccccc---cccchhhcccCCccccccHHHHH
Confidence                 2344556788888876542      1     16679999999932 110   01122222335899999999999


Q ss_pred             Hhhhhhh
Q 016952          368 ESTSKEQ  374 (380)
Q Consensus       368 EST~~~~  374 (380)
                      ||=-..|
T Consensus       408 e~ie~~~  414 (424)
T 1sqd_A          408 KSIEEYE  414 (424)
T ss_dssp             HHC----
T ss_pred             HHHHHHH
Confidence            9976555

>1sp8_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 2.00A {Zea mays} SCOP: d.32.1.3 d.32.1.3

Probab=95.74  E-value=0.024  Score=56.69  Aligned_cols=109  Identities=19%  Similarity=0.303  Sum_probs=72.8

Q ss_pred             hhhHhhh-cCCCCcccceecccccccCCCHHHHHHHHHH----CCCccccCC------------C---------------
Q 016952          246 YAAWTLV-NGYAVNHVTISIHHLKSQLNNIKSLNQFIED----NGFRLNSEG------------G---------------  293 (380)
Q Consensus       246 yAAWIa~-~Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~----~G~~ln~~G------------G---------------  293 (380)
                      ...++-. .|..++|+++       .+.||++..+.|++    +|+++-+.=            |               
T Consensus       270 i~~fl~~~~G~G~~HIAf-------~vdDI~~a~~~L~~r~~~~Gv~~l~~Pp~~YY~~l~~r~~~~~~~~~~~~l~~~~  342 (418)
T 1sp8_A          270 IQTFLDHHGGPGVQHMAL-------ASDDVLRTLREMQARSAMGGFEFMAPPTSDYYDGVRRRAGDVLTEAQIKECQELG  342 (418)
T ss_dssp             HHHHHHHHTSSEEEEEEE-------EETTHHHHHHHHHTSGGGTSCCBCCCCCHHHHHHHHHHHTTTSCHHHHHHHHHHT
T ss_pred             hhhhhhccCCCCcCEEEE-------EeCCHHHHHHHHhhhhccCCeEEccCCCcchhHHHHHhhccccchhhHHHHHHhC
Confidence            3334432 4778999997       67799999999999    799776531            1               


Q ss_pred             -eEEeCCCcceEeeeecccceeEEecCCcEeeeccceEeeeeeccC-CCCCCCChhhhhhhccccCcCCCChhHHHHhhh
Q 016952          294 -VLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVL-PQYKNLPEAEVKEFHRRDGFEVGNADKIFESTS  371 (380)
Q Consensus       294 -~IkgSP~glLrQSSt~Ad~~~v~F~DG~~~~IPgsfyEFaeR~~l-p~~~~~~~~el~~~~~~~GF~a~NAdkIFEST~  371 (380)
                       .|-+-.+|.|.|..|+...      |+     |.=|+||+||.-- -+.   ..++.....-.+||=.||=..+|||--
T Consensus       343 IL~D~d~~g~llqift~~~~------~~-----pt~FfEiIqR~g~~~~~---~~~~~~~~~~~~gFg~gNf~aLfeaie  408 (418)
T 1sp8_A          343 VLVDRDDQGVLLQIFTKPVG------DR-----PTLFLEIIQRIGCMEKD---EKGQEYQKGGCGGFGKGNFSQLFKSIE  408 (418)
T ss_dssp             CEEEECSSEEEEEEEBCCSS------SS-----SCCEEEEEEEEECCCCS---SSCSCCCCTTTTCSSGGGHHHHHHHHH
T ss_pred             cEEecCCCCeEEEEEecccC------CC-----CceEEEEEEeeCccccc---cccchhhccCCCCcccccHHHHHHHHH
Confidence             1233456788888876542      11     6679999999932 110   001222233369999999999999987


Q ss_pred             hhhh
Q 016952          372 KEQL  375 (380)
Q Consensus       372 ~~~~  375 (380)
                      ..|.
T Consensus       409 ~~~~  412 (418)
T 1sp8_A          409 DYEK  412 (418)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            6663

>3gm5_A Lactoylglutathione lyase and related lyases; sheet-helix-sheet-sheet-sheet motif, isomerase; HET: CIT; 2.00A {Thermoanaerobacter tengcongensis}

Probab=82.65  E-value=0.72  Score=37.86  Aligned_cols=41  Identities=12%  Similarity=0.302  Sum_probs=33.0

Q ss_pred             hhhhhHhhhcCCCCcccceecccccccCCCHHHHHHHHHHCCCccccC
Q 016952          244 SEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSE  291 (380)
Q Consensus       244 SeyAAWIa~~Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~  291 (380)
                      ++++.|+...|..++|+++       .+.||+++.+.|+++|+++...
T Consensus        92 ~~~~~~l~~~~~g~~Hiaf-------~v~di~~~~~~l~~~G~~~~~~  132 (159)
T 3gm5_A           92 STWREFLDKNGEGIHHIAF-------VVKDMDRKVEELYRKGMKVIQK  132 (159)
T ss_dssp             CHHHHHHHHHCSEEEEEEE-------ECSCHHHHHHHHHHTTCCEEEE
T ss_pred             ChhHHHhhcCCceEEEEEE-------EcCCHHHHHHHHHHCCCcEeec
Confidence            4566677667778999997       6679999999999999987543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	380
d1cjxa2	203	4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudom	97.09
d1t47a2	199	4-hydroxyphenylpyruvate dioxygenase, HppD {Strepto	97.06
d1sp8a2	224	4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Z	96.53
d1sqia2	210	4-hydroxyphenylpyruvate dioxygenase, HppD {Human (	94.98
d1sqda2	230	4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-e	93.81
d1cjxa1	150	4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudom	91.61
d1sqda1	167	4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-e	87.65

>d1cjxa2 d.32.1.3 (A:154-356) 4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Pseudomonas fluorescens [TaxId: 294]

Probab=97.09  E-value=0.00039  Score=61.32  Aligned_cols=97  Identities=24%  Similarity=0.352  Sum_probs=68.2

Q ss_pred             hhhhhHhhhc-CCCCcccceecccccccCCCHHHHHHHHHHCCCccccC-CC--------eEE-----------------
Q 016952          244 SEYAAWTLVN-GYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSE-GG--------VLK-----------------  296 (380)
Q Consensus       244 SeyAAWIa~~-Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~-GG--------~Ik-----------------  296 (380)
                      |+..-++..+ |-.+.|+++       +++||.+..+.|+++|+++-+. -.        .+.                 
T Consensus        71 sqi~~fl~~~~g~GiqHIAf-------~vdDI~aav~~L~~~Gv~fL~~pp~~Yy~~l~~~~~~~~~~~~~l~~~~iL~D  143 (203)
T d1cjxa2          71 GQIEEFLMQFNGEGIQHVAF-------LTDDLVKTWDALKKIGMRFMTAPPDTYYEMLEGRLPDHGEPVDQLQARGILLD  143 (203)
T ss_dssp             SHHHHHHHHHTSSBCCEEEE-------EESCHHHHHHHHHHTTCCBCCCCCHHHHHTHHHHSTTCCCCHHHHHHHTCEEE
T ss_pred             cHHHHHHHhcCCCCCceEEE-------EeCCHHHHHHHHHhcCCccccCchhhHHHHHHHhhccccchHHHHHHcCEEEe
Confidence            4455566654 568999997       7789999999999999877541 00        000                 


Q ss_pred             ----eCCCcceEeeeecccceeEEecCCcEeeeccceEeeeeeccCCCCCCCChhhhhhhccccCcCCCChhHHHHhhhh
Q 016952          297 ----VSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTSK  372 (380)
Q Consensus       297 ----gSP~glLrQSSt~Ad~~~v~F~DG~~~~IPgsfyEFaeR~~lp~~~~~~~~el~~~~~~~GF~a~NAdkIFEST~~  372 (380)
                          +...+.|.|..|...             .++-|+|++||.    |             ++||=++|+..+||+--.
T Consensus       144 ~d~~~~~~~~llqifT~~~-------------~~~~FfEiiqR~----g-------------~~GfG~~N~~al~~a~e~  193 (203)
T d1cjxa2         144 GSSVEGDKRLLLQIFSETL-------------MGPVFFEFIQRK----G-------------DDGFGEGNFKALFESIER  193 (203)
T ss_dssp             EEEETTEEEEEEEEEBCCC-------------BTTBEEEEEEEE----B-------------CCSCCHHHHHHHHHHHHH
T ss_pred             cCCCCCCCceEEEEeccCC-------------CCCeEEEEEEEc----C-------------CCccchhhHHHHHHHHHH
Confidence                001245666666442             134599999997    2             689999999999999887


Q ss_pred             hhhhh
Q 016952          373 EQLTR  377 (380)
Q Consensus       373 ~~~~~  377 (380)
                      +|.+|
T Consensus       194 ~q~~r  198 (203)
T d1cjxa2         194 DQVRR  198 (203)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            77655

>d1t47a2 d.32.1.3 (A:179-377) 4-hydroxyphenylpyruvate dioxygenase, HppD {Streptomyces avermitilis [TaxId: 33903]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Streptomyces avermitilis [TaxId: 33903]

Probab=97.06  E-value=0.00038  Score=61.65  Aligned_cols=97  Identities=25%  Similarity=0.328  Sum_probs=71.2

Q ss_pred             hhhhhhHhhhcC-CCCcccceecccccccCCCHHHHHHHHHHCCCccccC-------------------------CCeEE
Q 016952          243 ESEYAAWTLVNG-YAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSE-------------------------GGVLK  296 (380)
Q Consensus       243 ESeyAAWIa~~G-y~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~-------------------------GG~Ik  296 (380)
                      .|+.+-.+..+| -.+.|+++       +++||.+..+.|+++|+++-+-                         |=.+-
T Consensus        75 ~s~i~~FL~~~~g~GiQHIAl-------~tdDI~~av~~L~~~G~~fL~~p~~YY~~l~~r~~~~~~~~~~l~~~~IL~D  147 (199)
T d1t47a2          75 KSQIDEYLEFYGGAGVQHIAL-------NTGDIVETVRTMRAAGVQFLDTPDSYYDTLGEWVGDTRVPVDTLRELKILAD  147 (199)
T ss_dssp             CCHHHHHHHHHTSCEEEEEEE-------ECSCHHHHHHHHHHTTCCBCCCCGGGTTSHHHHHCCCSSCHHHHHHHTCEEE
T ss_pred             ccchhhhhhhcCCCcceEEEE-------EcCCHHHHHHHHHHcCCCCCCCChHHHHHHHHHhcccccCHHHHHhcCeEEe
Confidence            355555566564 58999997       7899999999999999966541                         11223


Q ss_pred             eCCCcceEeeeecccceeEEecCCcEeeeccceEeeeeeccCCCCCCCChhhhhhhccccCcCCCChhHHHHhhhhhh
Q 016952          297 VSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTSKEQ  374 (380)
Q Consensus       297 gSP~glLrQSSt~Ad~~~v~F~DG~~~~IPgsfyEFaeR~~lp~~~~~~~~el~~~~~~~GF~a~NAdkIFEST~~~~  374 (380)
                      +.++|.|.|..|.-.-.           -|+-|+|++||.    |             ++||-+||...+||+--.+|
T Consensus       148 ~d~~g~llqift~~~~~-----------~~~~FfEiiqR~----g-------------~~GfG~~N~~alf~a~e~~q  197 (199)
T d1t47a2         148 RDEDGYLLQIFTKPVQD-----------RPTVFFEIIERH----G-------------SMGFGKGNFKALFEAIEREQ  197 (199)
T ss_dssp             ECSSCEEEEEEBCCSSS-----------SSCCEEEEEEEE----B-------------CCCCSTHHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEEecccCC-----------CCceeEEEEEEc----C-------------CCCccccHHHHHHHHHHHHh
Confidence            35568888888764321           267799999997    3             69999999999999765444

>d1sp8a2 d.32.1.3 (A:208-431) 4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Corn (Zea mays) [TaxId: 4577]

Probab=96.53  E-value=0.0019  Score=57.73  Aligned_cols=111  Identities=17%  Similarity=0.233  Sum_probs=71.7

Q ss_pred             hhhhhhHhhhcC-CCCcccceecccccccCCCHHHHHHHHHHCCCc-----ccc--------------------------
Q 016952          243 ESEYAAWTLVNG-YAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFR-----LNS--------------------------  290 (380)
Q Consensus       243 ESeyAAWIa~~G-y~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~-----ln~--------------------------  290 (380)
                      .|+..-|+.-+| -.++|+++       .++||++..+.|+++|+.     +..                          
T Consensus        77 ~s~i~~FL~~~~g~GiqHIAf-------~vdDI~~av~~L~arGv~~G~~fl~~p~~~Yy~~~~~~~~~~l~~~~~~~l~  149 (224)
T d1sp8a2          77 RSQIQTFLDHHGGPGVQHMAL-------ASDDVLRTLREMQARSAMGGFEFMAPPTSDYYDGVRRRAGDVLTEAQIKECQ  149 (224)
T ss_dssp             CCHHHHHHHHHTSSEEEEEEE-------EETTHHHHHHHHHTSGGGTSCCBCCCCCHHHHHHHHHHHTTTSCHHHHHHHH
T ss_pred             ccHHHHHHHhccCCCceeEEE-------EeCCHHHHHHHHHhccccccceecccchhhhhhhHHhhccccccHHHHHHHH
Confidence            466667776665 57999997       788999999999988742     110                          


Q ss_pred             -CCCeEEeCCCcceEeeeecccceeEEecCCcEeeeccceEeeeeeccC-CCCCCCChhhhhhhccccCcCCCChhHHHH
Q 016952          291 -EGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVL-PQYKNLPEAEVKEFHRRDGFEVGNADKIFE  368 (380)
Q Consensus       291 -~GG~IkgSP~glLrQSSt~Ad~~~v~F~DG~~~~IPgsfyEFaeR~~l-p~~~~~~~~el~~~~~~~GF~a~NAdkIFE  368 (380)
                       -|=.+.+..++.|.|..|...-.           -|+-|+||+||.-- -.+..   +......-++||-+||...+||
T Consensus       150 ~~~iL~D~d~~g~llQifT~~~~~-----------~~~~FfEiIqR~g~~~~~~~---~~~~~~~~~~GfG~gN~~aLf~  215 (224)
T d1sp8a2         150 ELGVLVDRDDQGVLLQIFTKPVGD-----------RPTLFLEIIQRIGCMEKDEK---GQEYQKGGCGGFGKGNFSQLFK  215 (224)
T ss_dssp             HHTCEEEECSSEEEEEEEBCCSSS-----------SSCCEEEEEEEEECCCCSSS---CSCCCCTTTTCSSGGGHHHHHH
T ss_pred             HhCCCCCCCCCCEEEEEeeecccC-----------CCCeEEEEEEecCccccccc---cccccccCCCcCChhHHHHHHH
Confidence             00123445567788887765322           26779999999521 00000   0010122389999999999999


Q ss_pred             hhhhhh
Q 016952          369 STSKEQ  374 (380)
Q Consensus       369 ST~~~~  374 (380)
                      |--..|
T Consensus       216 sie~~q  221 (224)
T d1sp8a2         216 SIEDYE  221 (224)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            876554

>d1sqia2 d.32.1.3 (A:157-366) 4-hydroxyphenylpyruvate dioxygenase, HppD {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.011  Score=52.38  Aligned_cols=86  Identities=22%  Similarity=0.367  Sum_probs=59.6

Q ss_pred             HhhhhhhHhhhc-CCCCcccceecccccccCCCHHHHHHHHHHCCCccccC-----------------------------
Q 016952          242 RESEYAAWTLVN-GYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSE-----------------------------  291 (380)
Q Consensus       242 ~ESeyAAWIa~~-Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~-----------------------------  291 (380)
                      ..|...-++..+ |-.+.|+++       ++.||.+..+.|+++|+++-+.                             
T Consensus        92 ~~sqi~~fl~~~~G~GiQHIAf-------~t~DI~~av~~L~~~Gv~fL~~P~~YY~~l~~r~~~~~~~~~~~~~~l~~~  164 (210)
T d1sqia2          92 KKSQIQEYVDYNGGAGVQHIAL-------RTEDIITTIRHLRERGMEFLAVPSSYYRLLRENLKTSKIQVKENMDVLEEL  164 (210)
T ss_dssp             --CHHHHHHHHHTSSEEEEEEE-------EESCHHHHHHHHHHHTCCBCCCCHHHHHHHHHHHHTCSSCCCSCHHHHHHH
T ss_pred             cccHHHHHHhhcCCCCeeEEEE-------EcCCHHHHHHHHHHcCCCCCCCCcchhhhHHhhhhcccccccccHHHHHhc
Confidence            345555556544 778999997       7889999999999999866520                             


Q ss_pred             CCeEEeCCCcceEeeeecccceeEEecCCcEeeeccceEeeeeeccCCCCCCCChhhhhhhccccCcCCCC
Q 016952          292 GGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGN  362 (380)
Q Consensus       292 GG~IkgSP~glLrQSSt~Ad~~~v~F~DG~~~~IPgsfyEFaeR~~lp~~~~~~~~el~~~~~~~GF~a~N  362 (380)
                      |=.+-+..++.|.|..|...-.           -|+-|+||+||.    |             ++||=+||
T Consensus       165 ~IL~D~d~~g~llqifT~~~~~-----------~~~~FfEiIqR~----g-------------~~GFG~gN  207 (210)
T d1sqia2         165 KILVDYDEKGYLLQIFTKPMQD-----------RPTLFLEVIQRH----N-------------HQGFGAGN  207 (210)
T ss_dssp             TCEEECCTTCEEEEEEBCCSSS-----------SSCCEEEEEEEE----S-------------CCCCSHHH
T ss_pred             CEEEecCCCCeEEEEeecCcCC-----------CCceEEEEEEEC----C-------------CCccCccC
Confidence            1122223457788887765322           166799999996    2             68998887

>d1sqda2 d.32.1.3 (A:181-410) 4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.81  E-value=0.039  Score=49.19  Aligned_cols=107  Identities=22%  Similarity=0.270  Sum_probs=65.5

Q ss_pred             HhhhhhhHhhhc-CCCCcccceecccccccCCCHHHHHHHHHHCCCc-----ccc-------------------------
Q 016952          242 RESEYAAWTLVN-GYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFR-----LNS-------------------------  290 (380)
Q Consensus       242 ~ESeyAAWIa~~-Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~-----ln~-------------------------  290 (380)
                      ..|+..-.+..+ |-.++|+++       ++.||.+..+.|+++|+.     +..                         
T Consensus        89 ~~sqi~~FL~~~~G~GiQHIAf-------~tdDI~aav~~LrarG~~~G~~f~~~~p~~YY~~l~~r~~~~l~~~~~~~l  161 (230)
T d1sqda2          89 RKSQIQTYLEHNEGAGLQHLAL-------MSEDIFRTLREMRKRSSIGGFDFMPSPPPTYYQNLKKRVGDVLSDDQIKEC  161 (230)
T ss_dssp             -CCHHHHHHHHHTSCEEEEEEE-------EESCHHHHHHHHHHHGGGTSCCBCCCCCHHHHHHHHHHHTTTSCHHHHHHH
T ss_pred             CcchHHHHHhhccCCceeEEEE-------EeCCHHHHHHHHHHhhcccCcccccCCchHHHHHHHHHhccccchHhHHHH
Confidence            345555566554 778999997       778999999999997653     211                         


Q ss_pred             --CCCeEEeCCCcceEeeeecccceeEEecCCcEeeeccceEeeeeecc-CCCCCCCChhhhhhhccccCcCCCChhHHH
Q 016952          291 --EGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLV-LPQYKNLPEAEVKEFHRRDGFEVGNADKIF  367 (380)
Q Consensus       291 --~GG~IkgSP~glLrQSSt~Ad~~~v~F~DG~~~~IPgsfyEFaeR~~-lp~~~~~~~~el~~~~~~~GF~a~NAdkIF  367 (380)
                        .|=.+-+..++.|.|-.|.-.-.           -|+=|+|++||.- ...+ .  +.......-.+||=+||=..+|
T Consensus       162 ~~~~IL~D~d~~g~llqifT~~~~~-----------~~t~FfEiIqR~G~~~~~-~--~~~~~~r~~a~GFG~gN~~aLf  227 (230)
T d1sqda2         162 EELGILVDRDDQGTLLQIFTKPLGD-----------RPTIFIEIIQRVGCMMKD-E--EGKAYQSGGCGGFGKGNFSELF  227 (230)
T ss_dssp             HHHTCEEEECSSEEEEEEEBCCSSS-----------SSCCEEEEEEEEECBC----------CBCTTTTCSSTTHHHHHH
T ss_pred             HHcCCcccCCCCCeEEEEeccccCC-----------CCCcEEEEEEecCCcccc-c--cccccccccCCCCchhHHHHHH
Confidence              00122334456777777654321           2667999999952 1100 0  0001111226999999999999


Q ss_pred             Hh
Q 016952          368 ES  369 (380)
Q Consensus       368 ES  369 (380)
                      |+
T Consensus       228 ~a  229 (230)
T d1sqda2         228 KS  229 (230)
T ss_dssp             HH
T ss_pred             hh
Confidence            97

>d1cjxa1 d.32.1.3 (A:4-153) 4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Pseudomonas fluorescens [TaxId: 294]

Probab=91.61  E-value=0.098  Score=43.04  Aligned_cols=93  Identities=10%  Similarity=0.022  Sum_probs=65.0

Q ss_pred             cccceeeeecCCCccchhhHHHhcCCeecceeeeeecCCCCCCCCCCCCCeEEeeccccCcCCHHHHHHHHHHHhhcCCC
Q 016952          135 CYDHIAFRTFGLKRLALLEGLVDVYLLSICDVTFSFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSG  214 (380)
Q Consensus       135 ~nDHiAfRT~~~~~~Giar~F~~LGY~~~G~Y~F~f~pp~~~l~~~g~~PRVFISEL~vd~lS~~~q~iI~~lv~~~~~~  214 (380)
                      -.||+.|=+=+.+..  +++|..|||++.++      +...         .+++  ++-..                   
T Consensus         9 Gidhv~fav~d~~~~--~~~~~~lGF~~~~~------~~~~---------~~~l--~~~G~-------------------   50 (150)
T d1cjxa1           9 GFEFIEFASPTPGTL--EPIFEIMGFTKVAT------HRSK---------NVHL--YRQGE-------------------   50 (150)
T ss_dssp             EEEEEEEECSSTTSS--HHHHHHTTCEEEEE------ESSS---------SEEE--EEETT-------------------
T ss_pred             CEEEEEEecCCHHHH--HHHHHHhCCEEEec------ccce---------EEEE--EecCc-------------------
Confidence            479999987655443  99999999999998      4332         1221  11000                   


Q ss_pred             chHHHHHHHhcCCCCCCCCHHHHHHHHHhhhhhhHhhhcCCCCcccceecccccccCCCHHHHHHHHHHCCCccccC
Q 016952          215 KKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSE  291 (380)
Q Consensus       215 ~~~~~l~~~~~~~~W~~ps~adYe~L~~ESeyAAWIa~~Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~  291 (380)
                           +..++   ...           ..|+.+.++..+|..++|+++       +|.|+++..+.++++|+++-+.
T Consensus        51 -----i~ll~---~~~-----------~~s~~~~~~~~hg~gv~hiaf-------~V~D~~~a~~~a~~~Ga~~i~~  101 (150)
T d1cjxa1          51 -----INLIL---NNE-----------PNSIASYFAAEHGPSVCGMAF-------RVKDSQKAYNRALELGAQPIHI  101 (150)
T ss_dssp             -----EEEEE---ECC-----------SSSHHHHHHHHHSSEEEEEEE-------EESCHHHHHHHHHHTTCCBCCC
T ss_pred             -----EEEEe---cCC-----------CCCHhHhHHhhCCCceEEEEE-------EeCCHHHHHHHHHHCCCEEccc
Confidence                 00111   111           356788899999999999997       8999999999999999976543

>d1sqda1 d.32.1.3 (A:14-180) 4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.65  E-value=0.42  Score=38.37  Aligned_cols=43  Identities=19%  Similarity=0.206  Sum_probs=36.8

Q ss_pred             HhhhhhhHhhhcCCCCcccceecccccccCCCHHHHHHHHHHCCCccccC
Q 016952          242 RESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSE  291 (380)
Q Consensus       242 ~ESeyAAWIa~~Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~  291 (380)
                      .+++...++..+|..+.|+++       ++.||+++.++|+++|.+....
T Consensus        90 ~~~~~~~~~~~~~~G~~Hiaf-------~VdDi~aa~~~l~~~G~~~~~~  132 (167)
T d1sqda1          90 DHGSCRSFFSSHGLGVRAVAI-------EVEDAESAFSISVANGAIPSSP  132 (167)
T ss_dssp             CHHHHHHHHHHHCSEEEEEEE-------EESCHHHHHHHHHHTTCCEEEE
T ss_pred             CcchHHHhhhccCCCceEEEE-------EeCCHHHHHHHHHHCCCEEecC
Confidence            566777788888999999997       7889999999999999976653