Citrus Sinensis ID: 016966

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MCGMGLGLFQGVNKMEAARNRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIASTKRNVFTATNEQVDGCREWSDGSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNPAESKV
Secondary Structure (PSIPRED)
ccEEEEccccccccHHHHHHHHHHHHHHHHHccccccccccccccEEccHHHHHHHHHHHcccccEEEEEcccccccccccccccHHHHHHHHHccccccccccccccccHHHHHHcccccccccccccccccHHHHccccEEEEEccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccHHHHccccccEEcccccccccccccHHccccccccEEEEcccccccHHHHHcccccccHHHHcccccccEEEEEcccccccccccccccccEEEEEcccccccccccccccccEEEccccccccccccccccccEEEccccccccccHHHHHHHHHccccccEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEHHHHHHHHHHHHHHcccccEEEEEEccccccccccHHHHHcEEEEEEccccHHcccccccccccEEEEEEcccccccccccccccccHHHHHcccEEEEEcccccccccHHHHHHHcHccccccccccHHHHHHHHHcEEEEcccccHHHccHHHHHHHHcEEEcccccccccEccccHHHHHHHHEEEEEccccccccccccccccHHHHHHHHHHHcccEEEEEEcccHHccccccHccccEEEEEEEccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHccccccEcccccccEccccEEEEEEEccccccccccccc
Coil and Loop (DISEMBL)
mcgmglglfqGVNKMEAARNRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIASTkrnvftatneqvdgcrewsdgstikhFTSIVLhgikpnllpevlecpqlellfirgggrddpwetspvtipdnfFKSMIEVRVVNLTdmilpsslgllsnlrtlslcscglpdisfVGYLKKLEILCLrgsdivklpvevGELTWlklldlrdccflkvippnilsklSHLEELYIGRESFVDWEEEVEGVKNASLeelkhlpnltslevhvrdvsslprgllleKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRlegsdlalnpaeskv
Flexible Loop (DISEMBL)
MCGMGLGLFQGVNKMEAARNRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISiastkrnvftatneqvdgcrewsdgSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASleelkhlpnltslevhvrdvsslprgllleklerYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGsshlkrlrlegsdlalnpaeskv
Low Complexity Region (SEG)
MCGMGLGLFQGVNKMEAARNRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIASTKRNVFTATNEQVDGCREWSDGSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMILPsslgllsnlrtlslcsCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLErysiyirryfsrKTGIWCRQFRVELNNKICLKDSLIVQLQRIedlelselqeqdVDYFRNELVKVGSSHLKRLRLEGSDLALNPAESKV
Disordered region (IsUnstruct)
****GLGLFQGVNKMEAARNRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIASTKRNVFTATNEQVDGCREWSDGSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGS**********************
Disordered Region (DISOPRED)
MCGMGLGLFQGVNKMEAARNRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIASTKRNVFTATNEQVDGCREWSDGSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNPA*S**
Disordered Region (DISEMBL)
MCGMGLGLFQGVNKMEAARNRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIASTKRNVFTATNEQVDGCREWSDGSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLA********
Disordered Region (DISPRO)
MCGMGLGLFQGVNKMEAARNRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIASTKRNVFTATNEQVDGCREWSDGSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNP*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCGMGLGLFQGVNKMEAARNRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIASTKRNVFTATNEQVDGCREWSDGSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNPAESKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	379	2.2.26 [Sep-21-2011]
O81825	919	Probable disease resistan	yes	no	0.691	0.285	0.290	3e-13
Q42484	909	Disease resistance protei	no	no	0.622	0.259	0.296	9e-12
Q9T048	985	Disease resistance protei	no	no	0.762	0.293	0.264	2e-11
Q01730	277	Ras suppressor protein 1	yes	no	0.358	0.490	0.329	1e-07
Q15404	277	Ras suppressor protein 1	yes	no	0.358	0.490	0.317	9e-07
Q5E9C0	277	Ras suppressor protein 1	yes	no	0.358	0.490	0.317	9e-07
B0W6M9	628	Leucine-rich repeat prote	N/A	no	0.517	0.312	0.295	0.0002
O61967	699	Protein lap1 OS=Caenorhab	yes	no	0.411	0.223	0.269	0.0007
F1MCA7	1536	Leucine-rich repeat-conta	no	no	0.221	0.054	0.321	0.0008
Q96NW7	1537	Leucine-rich repeat-conta	no	no	0.221	0.054	0.321	0.0008

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 134/282 (47%), Gaps = 20/282 (7%)

Query: 7   GLFQGVNKMEAARNRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIASTKRNV 66
           GL  G +  E   N    LV  LK SC+L D +S   +   MHDVVR  AI   S++   
Sbjct: 392 GLLDGQHHYEDMMNEGVTLVERLKDSCLLEDGDSC--DTVKMHDVVRDFAIWFMSSQGEG 449

Query: 67  FTATNEQVDGCREWSDGSTIKHFTSIVLHGIKPNLLPE-VLECPQLELLFIRGGGRDDPW 125
           F +      G  E+     +     + L   K   LP  V+E  +  +L ++G       
Sbjct: 450 FHSLVMAGRGLIEFPQDKFVSSVQRVSLMANKLERLPNNVIEGVETLVLLLQGN------ 503

Query: 126 ETSPVTIPDNFFKSMIEVRVVNLTDM---ILPSSLGLLSNLRTLSLCSCG-LPDISFVGY 181
            +    +P+ F ++   +R+++L+ +    LP S   L +LR+L L +C  L ++  +  
Sbjct: 504 -SHVKEVPNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLRNCKKLRNLPSLES 562

Query: 182 LKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE 241
           L KL+ L L  S I +LP  +  L+ L+ + + +   L+ IP   + +LS LE L +   
Sbjct: 563 LVKLQFLDLHESAIRELPRGLEALSSLRYICVSNTYQLQSIPAGTILQLSSLEVLDMAGS 622

Query: 242 SFVDWE---EEVEGVKNASLEELKHLPNLTSLEVHVRDVSSL 280
           ++  W    EE EG   A+L+E+  LP+L  L + + DV S 
Sbjct: 623 AY-SWGIKGEEREG--QATLDEVTCLPHLQFLAIKLLDVLSF 661

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 127/277 (45%), Gaps = 41/277 (14%)

Query: 10  QGVNKMEAARNRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIAS---TKRNV 66
            GVN +       + L+  LKA+C LL+   EK ++  MH+VVR  A+ +AS   T + +
Sbjct: 439 HGVNTIYKG----YFLIGDLKAAC-LLETGDEKTQV-KMHNVVRSFALWMASEQGTYKEL 492

Query: 67  FTATNEQVDGCREWSDGSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWE 126
                E   G  E       +    I L   +   LPE L CP+L  L ++         
Sbjct: 493 ILV--EPSMGHTEAPKAENWRQALVISLLDNRIQTLPEKLICPKLTTLMLQQN------- 543

Query: 127 TSPVTIPDNFFKSMIEVRVVNLTDMILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLE 186
           +S   IP  FF  M  +RV++L+           +++  + L          + YL +L 
Sbjct: 544 SSLKKIPTGFFMHMPVLRVLDLS----------FTSITEIPLS---------IKYLVELY 584

Query: 187 ILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDW 246
            L + G+ I  LP E+G L  LK LDL+   FL+ IP + +  LS LE L +   S+  W
Sbjct: 585 HLSMSGTKISVLPQELGNLRKLKHLDLQRTQFLQTIPRDAICWLSKLEVLNL-YYSYAGW 643

Query: 247 EEEVEGVKNA---SLEELKHLPNLTSLEVHVRDVSSL 280
           E +  G   A      +L++L NLT+L + V  + +L
Sbjct: 644 ELQSFGEDEAEELGFADLEYLENLTTLGITVLSLETL 680

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 141/310 (45%), Gaps = 21/310 (6%)

Query: 4   MGLGLFQGVNKMEAARNRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIASTK 63
           M  G  + +   E + N     V +LK  C+L D   ++ +   MHDVVR  AI I S+ 
Sbjct: 420 MAEGFMEELGSQEDSMNEGITTVESLKDYCLLED--GDRRDTVKMHDVVRDFAIWIMSSS 477

Query: 64  RNVFTATNEQVDGCREWSDGSTIKHFTSIVLHGIKPNLLPEVLE--CPQLELLFIRGGGR 121
           ++   +      G ++            + L   K   LP+++E  C +  +L ++G   
Sbjct: 478 QDDSHSLVMSGTGLQDIRQDKLAPSLRRVSLMNNKLESLPDLVEEFCVKTSVLLLQGNFL 537

Query: 122 DDPWETSPVTIPDNFFKSMIEVRVVNLTDMILPS----SLGLLSNLRTLSLCSC-GLPDI 176
                     +P  F ++   +R++NL+   + S    SL  L +L +L L  C  L  +
Sbjct: 538 LKE-------VPIGFLQAFPTLRILNLSGTRIKSFPSCSLLRLFSLHSLFLRDCFKLVKL 590

Query: 177 SFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEEL 236
             +  L KLE+L L G+ I++ P  + EL   + LDL     L+ IP  ++S+LS LE L
Sbjct: 591 PSLETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPARVVSRLSSLETL 650

Query: 237 YIGRESFVDWEEEVEGVK-NASLEELKHLPNLTSLEVHVRDVSSL--PRGLLLEKLERYS 293
            +   S   W  + E  K  A++EE+  L  L  L + +     L   R   +++L+++ 
Sbjct: 651 DMT-SSHYRWSVQGETQKGQATVEEIGCLQRLQVLSIRLHSSPFLLNKRNTWIKRLKKFQ 709

Query: 294 IYI-RRYFSR 302
           + +  RY  R
Sbjct: 710 LVVGSRYILR 719

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q01730|RSU1_MOUSE Ras suppressor protein 1 OS=Mus musculus GN=Rsu1 PE=2 SV=3

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 77/164 (46%), Gaps = 28/164 (17%)

Query: 85  TIKHFTSIVL-HGIKPNLLPEVLECPQLELL-FIRGGGRDDPWETSPV------------ 130
           ++ H T +VL H     + P V E   LE+L F      + P + S +            
Sbjct: 38  SLAHITQLVLSHNKLTTVPPNVAELKNLEVLNFFNNQIEELPTQISSLQKLKHLNLGMNR 97

Query: 131 --TIPDNFFKS----MIEVRVVNLTDMILPSSLGLLSNLRTLSLCSCGL----PDISFVG 180
             T+P  F  S    ++E+   NL +  LP +   L+ LR L L         PDI   G
Sbjct: 98  LNTLPRGFGSSRLLEVLELTYNNLNEHSLPGNFFYLTTLRALYLSDNDFEILPPDI---G 154

Query: 181 YLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPP 224
            L KL+IL LR +D++ LP E+GELT LK L ++    L V+PP
Sbjct: 155 KLTKLQILSLRDNDLISLPKEIGELTQLKELHIQGNR-LTVLPP 197

Potentially plays a role in the Ras signal transduction pathway. Capable of suppressing v-Ras transformation in vitro.

Mus musculus (taxid: 10090)

>sp|Q15404|RSU1_HUMAN Ras suppressor protein 1 OS=Homo sapiens GN=RSU1 PE=1 SV=3

 Score = 55.1 bits (131), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 28/164 (17%)

Query: 85  TIKHFTSIVLHGIKPNLLP-EVLECPQLELL-FIRGGGRDDPWETSPV------------ 130
           T+ H T +VL   K  ++P  + E   LE+L F      + P + S +            
Sbjct: 38  TLSHITQLVLSHNKLTMVPPNIAELKNLEVLNFFNNQIEELPTQISSLQKLKHLNLGMNR 97

Query: 131 --TIPDNFFK----SMIEVRVVNLTDMILPSSLGLLSNLRTLSLCSCGL----PDISFVG 180
             T+P  F       ++++   NL++  LP +   L+ LR L L         PDI   G
Sbjct: 98  LNTLPRGFGSLPALEVLDLTYNNLSENSLPGNFFYLTTLRALYLSDNDFEILPPDI---G 154

Query: 181 YLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPP 224
            L KL+IL LR +D++ LP E+GELT LK L ++    L V+PP
Sbjct: 155 KLTKLQILSLRDNDLISLPKEIGELTQLKELHIQGNR-LTVLPP 197

Potentially plays a role in the Ras signal transduction pathway. Capable of suppressing v-Ras transformation in vitro.

Homo sapiens (taxid: 9606)

>sp|Q5E9C0|RSU1_BOVIN Ras suppressor protein 1 OS=Bos taurus GN=RSU1 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 76/164 (46%), Gaps = 28/164 (17%)

Query: 85  TIKHFTSIVL-HGIKPNLLPEVLECPQLELL-FIRGGGRDDPWETSPV------------ 130
           T+ H T +VL H     + P + E   LE+L F      + P + S +            
Sbjct: 38  TLSHITQLVLSHNKLTTVPPNIAELKNLEVLNFFNNQIEELPTQISSLQKLKHLNLGMNR 97

Query: 131 --TIPDNFFK----SMIEVRVVNLTDMILPSSLGLLSNLRTLSLCSCGL----PDISFVG 180
             T+P  F       ++++   NL +  LP +   L+ LR L L         PDI   G
Sbjct: 98  LNTLPRGFGSLPALEVLDLTYNNLNENSLPGNFFYLTTLRALYLSDNDFEILPPDI---G 154

Query: 181 YLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPP 224
            L KL+IL LR +D++ LP E+GELT LK L ++    L V+PP
Sbjct: 155 KLTKLQILSLRDNDLISLPKEIGELTQLKELHIQGNR-LTVLPP 197

Potentially plays a role in the Ras signal transduction pathway. Capable of suppressing v-Ras transformation in vitro.

Bos taurus (taxid: 9913)

>sp|B0W6M9|SUR8_CULQU Leucine-rich repeat protein soc-2 homolog OS=Culex quinquefasciatus GN=Sur-8 PE=3 SV=1

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 101/220 (45%), Gaps = 24/220 (10%)

Query: 139 SMIEVRVVNLTDMILPSSLGLLSNLRTLSLCS---CGLPDISFVGYLKKLEILCLRGSDI 195
           S+IE  +       LP  +G LSNL+TL+L       LPD   +  LK L++L LR + +
Sbjct: 171 SLIEFYLYGNKISSLPVEIGCLSNLKTLALNENSLTSLPD--SLQNLKALKVLDLRHNKL 228

Query: 196 VKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKN 255
            ++P  + +L  L  L LR    +KV+  N L  LS L  L +      +    +  ++N
Sbjct: 229 SEIPDVIYKLHTLTTLYLR-FNRIKVVGDN-LKNLSSLTMLSLRENKIHELPAAIGHLRN 286

Query: 256 -----ASLEELKHLP-------NLTSLEVHVRDVSSLPRGL----LLEKLE-RYSIYIRR 298
                 S   LKHLP       NLT+L++   D+  +P  +     L++L  RY+     
Sbjct: 287 LTTLDLSHNHLKHLPEAIGNCVNLTALDLQHNDLLDIPETIGNLANLQRLGLRYNQLTAI 346

Query: 299 YFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELS 338
             S +  I   +F VE N+   L D L+  L  +  + LS
Sbjct: 347 PVSLRNCIHMDEFNVEGNSISQLPDGLLASLSNLTTITLS 386

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Culex quinquefasciatus (taxid: 7176)

>sp|O61967|LAP1_CAEEL Protein lap1 OS=Caenorhabditis elegans GN=let-413 PE=1 SV=3

 Score = 45.4 bits (106), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 26/182 (14%)

Query: 123 DPWETSPVTIPDNFFKSMIEVRVVNLTDMILPSSLGLLSNLRTLSLCSCGLPDISF-VGY 181
           +P+   P TI +    +++ +   +LT  +LPS++G L+NLR L      L  I   +  
Sbjct: 115 NPFTRLPETICECSSITILSLNETSLT--LLPSNIGSLTNLRVLEARDNLLRTIPLSIVE 172

Query: 182 LKKLEILCLRGSDIVKLPVEVGELTWLK--LLDLRDCCFLKVIPPNILSKLSHLEELYIG 239
           L+KLE L L  +++  LP E+G+LT L+   +D+     L    P+ +S    L++L + 
Sbjct: 173 LRKLEELDLGQNELEALPAEIGKLTSLREFYVDINSLTSL----PDSISGCRMLDQLDVS 228

Query: 240 RESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLP------RGLLLEKLERYS 293
               +              E L  +PNLT L + + ++  LP      + L + K +R S
Sbjct: 229 ENQIIRLP-----------ENLGRMPNLTDLNISINEIIELPSSFGELKRLQMLKADRNS 277

Query: 294 IY 295
           ++
Sbjct: 278 LH 279

Critical role in assembling adherens junctions; adapter protein involved in polarizing protein trafficking in epithelial cells. Necessary to maintain, not establish, the entire terminal web (organelle-depleted, intermediate filament-rich layer of cytoplasm that underlies the apical microvilli of polarized epithelial cells) or brush border assembly at the apical surface gut cells. Required for correct localization of ifb-2 intermediate filaments in the terminal web.

Caenorhabditis elegans (taxid: 6239)

>sp|F1MCA7|LRRC7_BOVIN Leucine-rich repeat-containing protein 7 OS=Bos taurus GN=LRRC7 PE=3 SV=3

 Score = 45.1 bits (105), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 153 LPSSLGLLSNLRTLSLCSCGLPDISF-VGYLKKLEILCLRGSDIVKLPVEVGELTWLKLL 211
           LPS++G L +LRTL++    LP++   +G  K + ++ LR + +  LP E+G++  L++L
Sbjct: 313 LPSTIGYLHSLRTLAVDENFLPELPREIGSCKNVTVMSLRSNKLEFLPEEIGQMQKLRVL 372

Query: 212 DLRDCCFLKVIPPNILSKLSHLEELYI 238
           +L D     +  P   +KL  L  L++
Sbjct: 373 NLSDNRLKNL--PFSFTKLKELAALWL 397

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Bos taurus (taxid: 9913)

>sp|Q96NW7|LRRC7_HUMAN Leucine-rich repeat-containing protein 7 OS=Homo sapiens GN=LRRC7 PE=1 SV=1

 Score = 45.1 bits (105), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 153 LPSSLGLLSNLRTLSLCSCGLPDISF-VGYLKKLEILCLRGSDIVKLPVEVGELTWLKLL 211
           LPS++G L +LRTL++    LP++   +G  K + ++ LR + +  LP E+G++  L++L
Sbjct: 314 LPSTIGYLHSLRTLAVDENFLPELPREIGSCKNVTVMSLRSNKLEFLPEEIGQMQKLRVL 373

Query: 212 DLRDCCFLKVIPPNILSKLSHLEELYI 238
           +L D     +  P   +KL  L  L++
Sbjct: 374 NLSDNRLKNL--PFSFTKLKELAALWL 398

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
255563252	1603	Disease resistance protein RPS5, putativ	0.923	0.218	0.417	3e-55
255542484	2460	phosphoprotein phosphatase, putative [Ri	0.918	0.141	0.410	4e-55
225016144	3196	Rpp4 candidate 2 [Glycine max]	0.754	0.089	0.455	2e-54
356566878	2804	PREDICTED: uncharacterized protein LOC10	0.754	0.101	0.455	2e-54
224111296	1315	cc-nbs-lrr resistance protein [Populus t	0.920	0.265	0.394	3e-54
359488101	1677	PREDICTED: disease resistance protein At	0.849	0.192	0.422	6e-54
359488108	1436	PREDICTED: disease resistance protein At	0.860	0.227	0.430	6e-54
328447248	3009	Rpp4 candidate R1 [Glycine max]	0.746	0.094	0.447	9e-54
225016141	3055	Rpp4 candidate 1 [Glycine max]	0.746	0.092	0.447	9e-54
359487924	1731	PREDICTED: uncharacterized protein LOC10	0.854	0.187	0.413	9e-54

>gi|255563252|ref|XP_002522629.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223538105|gb|EEF39716.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 157/376 (41%), Positives = 220/376 (58%), Gaps = 26/376 (6%)

Query: 1   MCGMGLGLFQGVNKMEAARNRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIA 60
           M   GLGLF+G++ +  ARNRVH L+  LKA+C+LLD  S+ +    +HDVVR VAISIA
Sbjct: 421 MYSTGLGLFKGIDTLGDARNRVHKLISDLKAACLLLD--SDIKGRVKIHDVVRDVAISIA 478

Query: 61  STKRNVFTATNEQVDGCREWSDGSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGG 120
           S  +++FT  N  +   +EW +    K  T I L     + LPEVLECP+LEL  +    
Sbjct: 479 SRMQHLFTVRNGAL--LKEWPNKDVCKSCTRISLPYNDIHGLPEVLECPELELFLLFT-- 534

Query: 121 RDDPWETSPVTIPDNFFKSMIEVRVVNLTDM---ILPSSLGLLSNLRTLSLCSCGLPDIS 177
                +   + +PD  F+    +RV+N T M    LP SLG L NL TL L  C L D++
Sbjct: 535 -----QDISLKVPDLCFELTKNLRVLNFTGMHFSSLPPSLGFLKNLFTLCLDWCALRDVA 589

Query: 178 FVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELY 237
            +G L  L IL  + SDIV+LP E+ +LT LK LDL  C  LKVIP  I+S+L+ LEELY
Sbjct: 590 IIGELTGLTILSFKHSDIVELPREIRQLTKLKFLDLSHCLKLKVIPAKIISELTQLEELY 649

Query: 238 IGRESFVDWEEEVEGV---KNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSI 294
           +   SF  W  +V+G+   +NASL EL+ LP LT+LE+ V D   LP+ L   KLER+ I
Sbjct: 650 MNN-SFDLW--DVQGINNQRNASLAELECLPYLTTLEICVLDAKILPKDLFFRKLERFRI 706

Query: 295 YIRRYFSRKTGIW--CRQFRVELN-NKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNE 351
           +I   +S  TG +   R  +++LN + I L+  L + L+  EDL L+E+  + +     +
Sbjct: 707 FIGDVWS-GTGDYGTSRTLKLKLNTSSIHLEHGLSILLEVTEDLYLAEV--KGIKSVLYD 763

Query: 352 LVKVGSSHLKRLRLEG 367
           L   G + LK L ++ 
Sbjct: 764 LDSQGFTQLKHLDVQN 779

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis]

 Score =  221 bits (564), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 154/375 (41%), Positives = 222/375 (59%), Gaps = 27/375 (7%)

Query: 3   GMGLGLFQGVNKMEAARNRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIAST 62
            +GLGLF     ++AARNR+  +V  LK SC+LL+ + + E    MHDVV + A  +AS 
Sbjct: 372 SLGLGLFNQRTTVKAARNRLLKVVNDLKRSCLLLEGDDDDE--VRMHDVVHNFATLVASR 429

Query: 63  KRNVFTATNEQVDGCREWSDGSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRD 122
             +VF    +   G  EW +   ++ FT+I L   K   LPEV ECP L+   +      
Sbjct: 430 DHHVFAVACD--SGLEEWPEKDILEQFTAISLPDCKIPKLPEVFECPDLQSFLLYN---- 483

Query: 123 DPWETSPVTIPDNFFKSMIEVRVVNLTDMIL---PSSLGLLSNLRTLSLCSCGLPDISFV 179
              + S + IPDNFF  M ++++++L+++ L   P SL  L NL+TL L  C L DI+ +
Sbjct: 484 ---KDSSLKIPDNFFSRMKKLKLMDLSNVHLSPMPLSLQCLENLQTLCLDRCTLEDIAAI 540

Query: 180 GYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIG 239
           G LKKL++L   GS +V+LP EVG+LT L+LLDL  C  L+VIP  +LS L+ LEELY+G
Sbjct: 541 GELKKLQVLSFIGSTMVQLPREVGKLTRLQLLDLSRCQKLEVIPKGVLSCLTKLEELYMG 600

Query: 240 RESFVDWE-EEVEGVK-NASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIR 297
             SFV WE EE +G + NASL+ELK LPNL +LE+H+ +   LPR +  EKL+ Y ++I 
Sbjct: 601 N-SFVQWESEEHDGDRNNASLDELKLLPNLVTLELHIINAEILPRDVFSEKLDLYKVFIG 659

Query: 298 R---YFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQE-QDVDYFRNELV 353
               +F +      R  +++LN+ I + + + V L   EDL L EL+  ++V Y   EL 
Sbjct: 660 EEWSWFGKYEA--SRTLKLKLNSSIEI-EKVKVLLMTTEDLYLDELEGVRNVLY---ELD 713

Query: 354 KVGSSHLKRLRLEGS 368
             G   LK L ++ S
Sbjct: 714 GQGFPQLKHLHIQNS 728

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225016144|gb|ACN78968.1| Rpp4 candidate 2 [Glycine max]

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 139/305 (45%), Positives = 193/305 (63%), Gaps = 19/305 (6%)

Query: 1   MCGMGLGLFQGVNKMEAARNRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIA 60
           M  +GLGL QGV+ +  ARN+V+ L+  LK S +L   ES   + F+MHD+VR VA+SI+
Sbjct: 488 MLCIGLGLLQGVHTIREARNKVNILIEELKESTLL--GESYSRDRFNMHDIVRDVALSIS 545

Query: 61  STKRNVFTATNEQVDGCREWSDGSTIKHFTSIVLHGIKPNL-LPEVLECPQLELLFIRGG 119
           S +++VF   N  +D   EW     ++ +T+I LH    N  LPE + CP+LE+L I   
Sbjct: 546 SKEKHVFFMKNGILD---EWPHKDELERYTAICLHFCDINDGLPESIHCPRLEVLHI--D 600

Query: 120 GRDDPWETSPVTIPDNFFKSMIEVRVVNLTDM---ILPSSLGLLSNLRTLSLCSCGL-PD 175
            +DD      + IPD+FFK MIE+RV+ LT +    LPSS+  L  LR LSL  C L  +
Sbjct: 601 SKDDF-----LKIPDDFFKDMIELRVLILTGVNLSCLPSSIKCLKKLRMLSLERCTLGEN 655

Query: 176 ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEE 235
           +S VG LKKL IL L GS+I  LP+E G+L  L+L DL +C  L+VIP NI+SK++ LEE
Sbjct: 656 LSIVGELKKLRILTLSGSNIESLPLEFGQLDKLQLFDLSNCSKLRVIPSNIISKMNSLEE 715

Query: 236 LYIGRESFVDWE-EEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSI 294
            Y+ R+S + WE EE    +NASL EL+HL  L +L+VH++ VS  P+ L L+ L+ Y I
Sbjct: 716 FYL-RDSLILWEAEENIQSQNASLSELRHLNQLQNLDVHIQSVSHFPQNLFLDMLDSYKI 774

Query: 295 YIRRY 299
            I  +
Sbjct: 775 VIGEF 779

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566878|ref|XP_003551653.1| PREDICTED: uncharacterized protein LOC100819614 [Glycine max]

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 139/305 (45%), Positives = 193/305 (63%), Gaps = 19/305 (6%)

Query: 1   MCGMGLGLFQGVNKMEAARNRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIA 60
           M  +GLGL QGV+ +  ARN+V+ L+  LK S +L   ES   + F+MHD+VR VA+SI+
Sbjct: 488 MLCIGLGLLQGVHTIREARNKVNILIEELKESTLL--GESYSRDRFNMHDIVRDVALSIS 545

Query: 61  STKRNVFTATNEQVDGCREWSDGSTIKHFTSIVLHGIKPNL-LPEVLECPQLELLFIRGG 119
           S +++VF   N  +D   EW     ++ +T+I LH    N  LPE + CP+LE+L I   
Sbjct: 546 SKEKHVFFMKNGILD---EWPHKDELERYTAICLHFCDINDGLPESIHCPRLEVLHI--D 600

Query: 120 GRDDPWETSPVTIPDNFFKSMIEVRVVNLTDM---ILPSSLGLLSNLRTLSLCSCGL-PD 175
            +DD      + IPD+FFK MIE+RV+ LT +    LPSS+  L  LR LSL  C L  +
Sbjct: 601 SKDDF-----LKIPDDFFKDMIELRVLILTGVNLSCLPSSIKCLKKLRMLSLERCTLGEN 655

Query: 176 ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEE 235
           +S VG LKKL IL L GS+I  LP+E G+L  L+L DL +C  L+VIP NI+SK++ LEE
Sbjct: 656 LSIVGELKKLRILTLSGSNIESLPLEFGQLDKLQLFDLSNCSKLRVIPSNIISKMNSLEE 715

Query: 236 LYIGRESFVDWE-EEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSI 294
            Y+ R+S + WE EE    +NASL EL+HL  L +L+VH++ VS  P+ L L+ L+ Y I
Sbjct: 716 FYL-RDSLILWEAEENIQSQNASLSELRHLNQLQNLDVHIQSVSHFPQNLFLDMLDSYKI 774

Query: 295 YIRRY 299
            I  +
Sbjct: 775 VIGEF 779

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111296|ref|XP_002332952.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834264|gb|EEE72741.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 147/373 (39%), Positives = 214/373 (57%), Gaps = 24/373 (6%)

Query: 3   GMGLGLFQGVNKMEAARNRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIAST 62
           G+GL LF+G + +E  RN +  LV  LKASC+LL  E +K+    MHDVV   AIS+A  
Sbjct: 417 GIGLDLFKGCSTLEETRNSLLTLVDELKASCLLL--EGDKDGSVKMHDVVHSFAISVALR 474

Query: 63  KRNVFTATNEQVDGCREWSDGSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRD 122
             +V T  +E     +EW     ++ +T+I L   K   LP +LECP L    +      
Sbjct: 475 DHHVLTVADE----FKEWPANDVLQQYTAISLPFRKIPDLPAILECPNLNSFLLLN---K 527

Query: 123 DPWETSPVTIPDNFFKSMIEVRVVNLTDM---ILPSSLGLLSNLRTLSLCSCGLPDISFV 179
           DP     + IPD+FF+ M E+++++LT++    LPSSL  L NL+TL L  C L DIS +
Sbjct: 528 DP----SLQIPDSFFREMKELKILDLTEVNLSPLPSSLQFLENLQTLCLDHCVLEDISII 583

Query: 180 GYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIG 239
           G L KL++L L  S+IV+LP E+G++T L+LLDL +C  L+VI PN LS L+ LE+LY+G
Sbjct: 584 GELNKLKVLSLMSSNIVRLPREIGKVTRLQLLDLSNCERLEVISPNALSSLTRLEDLYMG 643

Query: 240 RESFVDWEEEVEGVK--NASLEELKHLPNLTSLEVHVRDVSSLPRGLL--LEKLERYSIY 295
             SFV WE E    +  NA L ELKHL NL++L + + D  ++P+ L    + LER+ I+
Sbjct: 644 N-SFVKWETEGSSSQRNNACLSELKHLSNLSTLHMQITDADNMPKDLFSSFQNLERFRIF 702

Query: 296 IRRYFSRKT-GIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVK 354
           I   +         R  +++LN  I L++ +   L+  E+L L EL    V    N+L  
Sbjct: 703 IGDGWDWSVKDATSRTLKLKLNTVIQLEEGVNTLLKITEELHLQEL--NGVKSILNDLDG 760

Query: 355 VGSSHLKRLRLEG 367
            G   L+ L ++ 
Sbjct: 761 EGFPQLRHLHVQN 773

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488101|ref|XP_002263761.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  218 bits (554), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 147/348 (42%), Positives = 197/348 (56%), Gaps = 26/348 (7%)

Query: 3   GMGLGLFQGVNKMEAARNRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIAST 62
           G+GL LFQG N +E A+NR+  LV TLK+S +LL  E+    +  MHD+VR  A  IAS 
Sbjct: 422 GVGLRLFQGTNTLEEAKNRIDTLVETLKSSNLLL--ETGHNAVVRMHDLVRSTARKIASD 479

Query: 63  KRNVFTATNEQVDGCREWSDGSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRD 122
           + +VFT  N  V     W     ++  TS+ LH      LPE L CP+LEL      G  
Sbjct: 480 QHHVFTLQNTTVR-VEGWPRIDELQKVTSVSLHDCDIRELPEGLVCPKLELF-----GCY 533

Query: 123 DPWETSPVTIPDNFFKSMIEVRVVNLTDMILPS---SLGLLSNLRTLSLCSCGLPDISFV 179
           D      V IP+ FF+ M +++V++L+ M LPS   SL  L+NLRTL L  C + DI  +
Sbjct: 534 DVNTNLAVQIPNKFFEEMKQLKVLDLSRMQLPSLPLSLHCLTNLRTLCLNGCKVGDIVII 593

Query: 180 GYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIG 239
             LKKLEIL L  SD+ +LP E+ +LT L+LLDL     LKVIP  ++S LS LE L + 
Sbjct: 594 AKLKKLEILSLIDSDMEQLPREIAQLTHLRLLDLSGSSKLKVIPSGVISSLSQLENLCMA 653

Query: 240 RESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRY 299
             SF  WE   EG  NA L ELKHL +LTSL++ +RD   LP+ ++ + L RY I++   
Sbjct: 654 N-SFTQWEG--EGKSNACLAELKHLSHLTSLDIQIRDAKLLPKDIVFDNLVRYRIFVGDV 710

Query: 300 FSRKTGIWCRQFRV-------ELNNKICLKDSLIVQLQRIEDLELSEL 340
           +S     W   F         +L+  + L D +I  L+R EDL L EL
Sbjct: 711 WS-----WREIFETNKTLKLNKLDTSLHLVDGIIKLLKRTEDLHLHEL 753

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488108|ref|XP_003633701.1| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  217 bits (553), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 148/344 (43%), Positives = 197/344 (57%), Gaps = 18/344 (5%)

Query: 3   GMGLGLFQGVNKMEAARNRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIAST 62
           G+GL LFQG N +E A+NR+ ALV  LK+S  LL  E+       MHD+VR  A  IAS 
Sbjct: 426 GVGLRLFQGTNTLEEAKNRIDALVDNLKSSNFLL--ETGHNAFVRMHDLVRSTARKIASD 483

Query: 63  KRNVFTATNEQVDGCREWSDGSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRD 122
           + +VFT  N  V     W     ++  T + LH      LPE L CP+LEL      G  
Sbjct: 484 QHHVFTLQNTTVR-VEGWPRIDELQKVTWVSLHDCDIRELPEGLACPKLELF-----GCY 537

Query: 123 DPWETSPVTIPDNFFKSMIEVRVVNLTDMILPS---SLGLLSNLRTLSLCSCGLPDISFV 179
           D    S V IP+NFF+ M +++V++L+ M LPS   S    +NLRTL L  C L +I  +
Sbjct: 538 DVNTNSAVQIPNNFFEEMKQLKVLDLSRMQLPSLPLSCHCRTNLRTLCLDGCNLGEIVII 597

Query: 180 GYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIG 239
             LKKLEIL L  SDI KLP E+ +LT L+L DL+    LKVIPP+++S LS LE+L + 
Sbjct: 598 AELKKLEILSLTYSDIEKLPREIAQLTHLRLFDLKGSYKLKVIPPDVISSLSQLEDLCM- 656

Query: 240 RESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRY 299
             SF  WE   EG  NA L ELKHL +LTSL++ + D   LP+ ++ + L RY I++   
Sbjct: 657 ENSFTQWEG--EGKSNACLAELKHLSHLTSLDIQIPDAKLLPKDIVFDTLVRYRIFVGDV 714

Query: 300 FSRKTGIWCRQFRVELN---NKICLKDSLIVQLQRIEDLELSEL 340
           +S   GI      ++LN     + L D +I  L+R EDL L EL
Sbjct: 715 WSW-GGISEANKTLQLNKFDTSLHLVDGIIKLLKRTEDLHLREL 757

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|328447248|gb|AEB06126.1| Rpp4 candidate R1 [Glycine max]

 Score =  217 bits (552), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 135/302 (44%), Positives = 192/302 (63%), Gaps = 19/302 (6%)

Query: 4   MGLGLFQGVNKMEAARNRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIASTK 63
           +GLGL QGV+ +  ARN+V+ L+  LK S +L   ES   + F+MHD+VR VA+SI+S +
Sbjct: 479 IGLGLLQGVHTIREARNKVNILIEELKESTLL--GESYSRDRFNMHDIVRDVALSISSKE 536

Query: 64  RNVFTATNEQVDGCREWSDGSTIKHFTSIVLHGIKPNL-LPEVLECPQLELLFIRGGGRD 122
           ++VF   N  +D   EW     ++ +T+I LH    N  LPE + CP+LE+L I     D
Sbjct: 537 KHVFFMKNGILD---EWPHKDELERYTAICLHFCDINDGLPESIHCPRLEVLHI--DNID 591

Query: 123 DPWETSPVTIPDNFFKSMIEVRVVNLTDM---ILPSSLGLLSNLRTLSLCSCGL-PDISF 178
           D      + IPDNFFK MIE+RV+ LT +    LPSS+  L  LR LSL  C L  ++S 
Sbjct: 592 DF-----LKIPDNFFKDMIELRVLILTGVNLSCLPSSIKCLKKLRMLSLERCTLGENLSI 646

Query: 179 VGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYI 238
           +G LKKL IL L GS+I  LP+E G+L  L+L D+ +C  L+VIP NI+S+++ LEE Y+
Sbjct: 647 IGELKKLRILTLSGSNIESLPLEFGQLDKLQLFDISNCSKLRVIPSNIISRMNSLEEFYM 706

Query: 239 GRESFVDWE-EEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIR 297
            R+S + WE EE    +NASL EL+HL  L +L++H++ VS  P+ L L+ L+ Y I+I 
Sbjct: 707 -RDSLILWEAEENIQSQNASLSELRHLNQLQNLDIHIQSVSHFPQNLFLDMLDSYKIFIG 765

Query: 298 RY 299
            +
Sbjct: 766 EF 767

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225016141|gb|ACN78965.1| Rpp4 candidate 1 [Glycine max]

 Score =  217 bits (552), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 135/302 (44%), Positives = 192/302 (63%), Gaps = 19/302 (6%)

Query: 4   MGLGLFQGVNKMEAARNRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIASTK 63
           +GLGL QGV+ +  ARN+V+ L+  LK S +L   ES   + F+MHD+VR VA+SI+S +
Sbjct: 479 IGLGLLQGVHTIREARNKVNILIEELKESTLL--GESYSRDRFNMHDIVRDVALSISSKE 536

Query: 64  RNVFTATNEQVDGCREWSDGSTIKHFTSIVLHGIKPNL-LPEVLECPQLELLFIRGGGRD 122
           ++VF   N  +D   EW     ++ +T+I LH    N  LPE + CP+LE+L I     D
Sbjct: 537 KHVFFMKNGILD---EWPHKDELERYTAICLHFCDINDGLPESIHCPRLEVLHI--DNID 591

Query: 123 DPWETSPVTIPDNFFKSMIEVRVVNLTDM---ILPSSLGLLSNLRTLSLCSCGL-PDISF 178
           D      + IPDNFFK MIE+RV+ LT +    LPSS+  L  LR LSL  C L  ++S 
Sbjct: 592 DF-----LKIPDNFFKDMIELRVLILTGVNLSCLPSSIKCLKKLRMLSLERCTLGENLSI 646

Query: 179 VGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYI 238
           +G LKKL IL L GS+I  LP+E G+L  L+L D+ +C  L+VIP NI+S+++ LEE Y+
Sbjct: 647 IGELKKLRILTLSGSNIESLPLEFGQLDKLQLFDISNCSKLRVIPSNIISRMNSLEEFYM 706

Query: 239 GRESFVDWE-EEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIR 297
            R+S + WE EE    +NASL EL+HL  L +L++H++ VS  P+ L L+ L+ Y I+I 
Sbjct: 707 -RDSLILWEAEENIQSQNASLSELRHLNQLQNLDIHIQSVSHFPQNLFLDMLDSYKIFIG 765

Query: 298 RY 299
            +
Sbjct: 766 EF 767

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487924|ref|XP_003633676.1| PREDICTED: uncharacterized protein LOC100246921 [Vitis vinifera]

 Score =  217 bits (552), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 141/341 (41%), Positives = 200/341 (58%), Gaps = 17/341 (4%)

Query: 3    GMGLGLFQGVNKMEAARNRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIAST 62
             MGL LF  ++ +E ARNR+ ALV  LKAS +LLD   ++++   MHDVV +V   IAS 
Sbjct: 1154 AMGLDLFDRIDSLEQARNRLLALVEILKASSLLLDSHEDRDKFVRMHDVVCNVVREIASK 1213

Query: 63   KRNVFTATNEQVDGCREWSDGSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRD 122
              + F    +   G  EWS+    K +T I LH    + LP+ L CP L+   +     +
Sbjct: 1214 DPHPFVVREDV--GLEEWSETDESKSYTFISLHCKAVHELPQGLVCPDLQFFQLHN---N 1268

Query: 123  DPWETSPVTIPDNFFKSMIEVRVVNLTDM---ILPSSLGLLSNLRTLSLCSCGLPDISFV 179
            +P     + IP+ FF+ M +++V++L+ M   +LPSSL  L+NL+TL L  C L DI+ +
Sbjct: 1269 NP----SLNIPNTFFEGMKKLKVLDLSKMRFTVLPSSLDSLTNLQTLRLDGCKLEDIALI 1324

Query: 180  GYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIG 239
            G L KLE+L L GS I +LP E+ +LT L+LLDL DC  L+VIP NILS LS LE LY+ 
Sbjct: 1325 GKLTKLEVLSLMGSTIQQLPNEMVQLTNLRLLDLNDCKELEVIPQNILSSLSRLECLYM- 1383

Query: 240  RESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRY 299
            + SF  W   VEG  NA L EL HL +LT+LE+ + +   LP+ +L E L RY I+I   
Sbjct: 1384 KSSFTQW--AVEGESNACLSELNHLSHLTTLEIDIPNAKLLPKDILFENLTRYGIFIGVS 1441

Query: 300  FSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSEL 340
               +T      +  E+N  + L D +   L+R E+L+  +L
Sbjct: 1442 GGLRTKRALNLY--EVNRSLHLGDGMSKLLERSEELQFYKL 1480

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.688	0.284	0.270	1.6e-09
TAIR|locus:2136447	985	AT4G27190 [Arabidopsis thalian	0.688	0.264	0.250	2.3e-08
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.321	0.136	0.294	3.9e-05
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.266	0.111	0.361	9.4e-05

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 76/281 (27%), Positives = 124/281 (44%)

Query:     7 GLFQGVNKMEAARNRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIASTKRNV 66
             GL  G +  E   N    LV  LK SC+L D +S   +   MHDVVR  AI   S++   
Sbjct:   392 GLLDGQHHYEDMMNEGVTLVERLKDSCLLEDGDSC--DTVKMHDVVRDFAIWFMSSQGEG 449

Query:    67 FTATNEQVDGCREWSDGSTIKHFTSIVLHGIKPNLLPE-VLECPQLELLFIRGGGRDDPW 125
             F +      G  E+     +     + L   K   LP  V+E  +  +L ++G       
Sbjct:   450 FHSLVMAGRGLIEFPQDKFVSSVQRVSLMANKLERLPNNVIEGVETLVLLLQGNSHVKE- 508

Query:   126 ETSPVTIPDNFFKSMIEVRVVNLTDM---ILPXXXXXXXXXXXXXXXXCG-LPDISFVGY 181
                   +P+ F ++   +R+++L+ +    LP                C  L ++  +  
Sbjct:   509 ------VPNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLRNCKKLRNLPSLES 562

Query:   182 LKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE 241
             L KL+ L L  S I +LP  +  L+ L+ + + +   L+ IP   + +LS LE L +   
Sbjct:   563 LVKLQFLDLHESAIRELPRGLEALSSLRYICVSNTYQLQSIPAGTILQLSSLEVLDMAGS 622

Query:   242 SFVDWE---EEVEGVKNASLEELKHLPNLTSLEVHVRDVSS 279
             ++  W    EE EG   A+L+E+  LP+L  L + + DV S
Sbjct:   623 AY-SWGIKGEEREG--QATLDEVTCLPHLQFLAIKLLDVLS 660

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 70/279 (25%), Positives = 119/279 (42%)

Query:     4 MGLGLFQGVNKMEAARNRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIASTK 63
             M  G  + +   E + N     V +LK  C+L D   ++ +   MHDVVR  AI I S+ 
Sbjct:   420 MAEGFMEELGSQEDSMNEGITTVESLKDYCLLED--GDRRDTVKMHDVVRDFAIWIMSSS 477

Query:    64 RNVFTATNEQVDGCREWSDGSTIKHFTSIVLHGIKPNLLPEVLE--CPQLELLFIRGGGR 121
             ++   +      G ++            + L   K   LP+++E  C +  +L ++G   
Sbjct:   478 QDDSHSLVMSGTGLQDIRQDKLAPSLRRVSLMNNKLESLPDLVEEFCVKTSVLLLQGN-- 535

Query:   122 DDPWETSPVTIPDNFFKSMIEVRVVNLTDMIL---PX-XXXXXXXXXXXXXXXC-GLPDI 176
                       +P  F ++   +R++NL+   +   P                 C  L  +
Sbjct:   536 -----FLLKEVPIGFLQAFPTLRILNLSGTRIKSFPSCSLLRLFSLHSLFLRDCFKLVKL 590

Query:   177 SFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEEL 236
               +  L KLE+L L G+ I++ P  + EL   + LDL     L+ IP  ++S+LS LE L
Sbjct:   591 PSLETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPARVVSRLSSLETL 650

Query:   237 YIGRESFVDWEEEVEGVKN-ASLEELKHLPNLTSLEVHV 274
              +   S   W  + E  K  A++EE+  L  L  L + +
Sbjct:   651 DM-TSSHYRWSVQGETQKGQATVEEIGCLQRLQVLSIRL 688

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
 Identities = 41/139 (29%), Positives = 73/139 (52%)

Query:    16 EAARNRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIASTKRNVFTATNEQVD 75
             E A ++ + ++  L  +C+LL+    KE++  MHDVVR +A+ IAS           QV 
Sbjct:   445 ERALSQGYEIIGILVRACLLLEEAINKEQV-KMHDVVREMALWIASDLGEHKERCIVQVG 503

Query:    76 -GCREWSDGSTIKHFTSIVLHGIKPNLLPEVL----ECPQLELLFIRGGGRDDPWETSPV 130
              G RE      +K+++S+    +  N + E+L    EC +L  LF++   ++D    S +
Sbjct:   504 VGLREVPK---VKNWSSVRRMSLMENEI-EILSGSPECLELTTLFLQ---KND----SLL 552

Query:   131 TIPDNFFKSMIEVRVVNLT 149
              I D FF+ +  + V++L+
Sbjct:   553 HISDEFFRCIPMLVVLDLS 571

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 9.4e-05, P = 9.4e-05
 Identities = 38/105 (36%), Positives = 57/105 (54%)

Query:   179 VGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYI 238
             + YL +L  L + G+ I  LP E+G L  LK LDL+   FL+ IP + +  LS LE L +
Sbjct:   577 IKYLVELYHLSMSGTKISVLPQELGNLRKLKHLDLQRTQFLQTIPRDAICWLSKLEVLNL 636

Query:   239 GRESFVDWEEEVEGVKNAS---LEELKHLPNLTSLEVHVRDVSSL 280
                S+  WE +  G   A      +L++L NLT+L + V  + +L
Sbjct:   637 -YYSYAGWELQSFGEDEAEELGFADLEYLENLTTLGITVLSLETL 680


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.139   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      379       339   0.00094  116 3  11 22  0.37    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  233 KB (2127 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.02u 0.11s 25.13t   Elapsed:  00:00:01
  Total cpu time:  25.02u 0.11s 25.13t   Elapsed:  00:00:01
  Start:  Fri May 10 04:21:45 2013   End:  Fri May 10 04:21:46 2013

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.03110007 cc-nbs-lrr resistance protein (1315 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	379
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.004

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 40/175 (22%), Positives = 72/175 (41%), Gaps = 6/175 (3%)

Query: 122 DDPWETSPVTIPDNFFKSMIEVRVVNLTDMILPSSLGLL-SNLRTLSLCSCGLPDISF-V 179
            +   ++   + +    + +++   N+TD  +P  +GLL SNL+ L L    +  +   +
Sbjct: 102 LNRLRSNISELLELTNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSDNKIESLPSPL 159

Query: 180 GYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIG 239
             L  L+ L L  +D+  LP  +  L+ L  LDL       +  P  +  LS LEEL + 
Sbjct: 160 RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDL--PPEIELLSALEELDLS 217

Query: 240 RESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSI 294
             S ++    +  +KN S  EL +       E      +     L   ++   S 
Sbjct: 218 NNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS 272

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	379
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.88
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.88
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.85
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.83
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.8
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.77
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.74
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.74
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.6
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.57
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.57
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.54
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.48
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.41
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.41
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.4
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.39
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.32
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.31
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.26
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.21
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.15
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.14
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.13
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.09
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.04
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.0
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.98
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.97
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.84
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.8
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.78
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.66
PLN03150	623	hypothetical protein; Provisional	98.61
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.49
PLN03150	623	hypothetical protein; Provisional	98.48
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.46
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.37
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.37
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.36
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.21
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.16
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.15
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.15
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.09
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.09
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.07
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.07
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.97
PRK15386	426	type III secretion protein GogB; Provisional	97.92
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.89
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.84
PRK15386	426	type III secretion protein GogB; Provisional	97.71
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.68
KOG4341	483	consensus F-box protein containing LRR [General fu	97.66
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.65
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.62
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.42
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.32
KOG4341	483	consensus F-box protein containing LRR [General fu	97.3
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.21
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.12
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.12
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.06
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.53
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.96
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.64
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.11
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.86
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.47
smart00370	26	LRR Leucine-rich repeats, outliers.	91.15
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.15
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.01
KOG4308	478	consensus LRR-containing protein [Function unknown	88.89
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	85.81
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.65
KOG4308	478	consensus LRR-containing protein [Function unknown	84.97
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	81.49

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.97  E-value=4.7e-31  Score=263.19  Aligned_cols=336  Identities=25%  Similarity=0.311  Sum_probs=232.5

Q ss_pred             CcccccccccccchHHHHHHHHHHHHHHHHHhccceeccc-cccCeEeechhHHHHHHHHhh-----cccceEEecCCcc
Q 016966            1 MCGMGLGLFQGVNKMEAARNRVHALVRTLKASCMLLDHES-EKEELFSMHDVVRHVAISIAS-----TKRNVFTATNEQV   74 (379)
Q Consensus         1 ~~Wiaeg~i~~~~~~e~~~~~~~~~~~~L~~~~l~~~~~~-~~~~~~~~hdl~~d~~~~~~~-----~~~~~~~~~~~~~   74 (379)
                      .||||||||++....+.|++.+++|+.+|++++|++.... ++..+|+|||+|||+|.++|+     +++  ..+..+. 
T Consensus       435 ~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~--~iv~~~~-  511 (889)
T KOG4658|consen  435 EYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEEN--QIVSDGV-  511 (889)
T ss_pred             HHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccc--eEEECCc-
Confidence            3899999999876777899999999999999999998764 357899999999999999999     666  3333332 


Q ss_pred             ccCcCCCCCCccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--
Q 016966           75 DGCREWSDGSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--  152 (379)
Q Consensus        75 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--  152 (379)
                       ++.+.+....+..+|++++.++.+..++....+++|++|.+.+|..   |   ...++..+|..|+.|++||+++|.  
T Consensus       512 -~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~---~---l~~is~~ff~~m~~LrVLDLs~~~~l  584 (889)
T KOG4658|consen  512 -GLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSD---W---LLEISGEFFRSLPLLRVLDLSGNSSL  584 (889)
T ss_pred             -CccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecch---h---hhhcCHHHHhhCcceEEEECCCCCcc
Confidence             4445566778899999999999998888888888999999999542   1   567888889999999999999887  


Q ss_pred             --CCccccCCCCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCc-CcccchhhcCCCCCCEEeccCCCC-CcccChhhh
Q 016966          153 --LPSSLGLLSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSD-IVKLPVEVGELTWLKLLDLRDCCF-LKVIPPNIL  227 (379)
Q Consensus       153 --lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~-l~~lp~~~~~l~~L~~L~l~~~~~-~~~~~~~~l  227 (379)
                        +|.+|+.|.+||||+++++.+.. |..++++.+|.+|++..+. +..+|.....|++||+|.+..... ....-...+
T Consensus       585 ~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el  664 (889)
T KOG4658|consen  585 SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKEL  664 (889)
T ss_pred             CcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhh
Confidence              99999999999999999999999 9999999999999999984 445555566699999999876431 111111113


Q ss_pred             CCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcE----EEeeccCCCCCCccc-cccCCcEEEEEeeccccc
Q 016966          228 SKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTS----LEVHVRDVSSLPRGL-LLEKLERYSIYIRRYFSR  302 (379)
Q Consensus       228 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~----L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~  302 (379)
                      .++.+|+.+.+.....            .....+..++.|++    +.+.++.....+... .+++|+.|.+..+.....
T Consensus       665 ~~Le~L~~ls~~~~s~------------~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~  732 (889)
T KOG4658|consen  665 ENLEHLENLSITISSV------------LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEI  732 (889)
T ss_pred             hcccchhhheeecchh------------HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchh
Confidence            4444455444432221            02233334444442    332233333233333 678888888855544311


Q ss_pred             CcccccceEEEEeCCcccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccCCCC
Q 016966          303 KTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNPAE  376 (379)
Q Consensus       303 ~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  376 (379)
                      .. .|....        ....    .|+++..+.+.+|.  ..+...+..+   .|+|+.|.+..|+.++.|..
T Consensus       733 ~~-~~~~~~--------~~~~----~f~~l~~~~~~~~~--~~r~l~~~~f---~~~L~~l~l~~~~~~e~~i~  788 (889)
T KOG4658|consen  733 VI-EWEESL--------IVLL----CFPNLSKVSILNCH--MLRDLTWLLF---APHLTSLSLVSCRLLEDIIP  788 (889)
T ss_pred             hc-cccccc--------chhh----hHHHHHHHHhhccc--cccccchhhc---cCcccEEEEecccccccCCC
Confidence            11 010000        0000    14566666666666  5666655544   46777777777766665543

>PLN03210 Resistant to P

Probab=99.91  E-value=6.2e-23  Score=214.89  Aligned_cols=326  Identities=18%  Similarity=0.221  Sum_probs=182.9

Q ss_pred             HHHHHHHhccceeccccccCeEeechhHHHHHHHHhhccc------ceEEec----------CCc--ccc-------CcC
Q 016966           25 LVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIASTKR------NVFTAT----------NEQ--VDG-------CRE   79 (379)
Q Consensus        25 ~~~~L~~~~l~~~~~~~~~~~~~~hdl~~d~~~~~~~~~~------~~~~~~----------~~~--~~~-------~~~   79 (379)
                      .++.|++++|++...    ..+.|||++|+||+++++++.      .+....          .+.  ..+       +.+
T Consensus       471 ~l~~L~~ksLi~~~~----~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~  546 (1153)
T PLN03210        471 GLKNLVDKSLIHVRE----DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDE  546 (1153)
T ss_pred             ChHHHHhcCCEEEcC----CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccce
Confidence            478899999998753    479999999999999997653      111100          000  000       000


Q ss_pred             C----CCCCccCCccEEEEeCCCC-------CCCCC-CCCC-CCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEE
Q 016966           80 W----SDGSTIKHFTSIVLHGIKP-------NLLPE-VLEC-PQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVV  146 (379)
Q Consensus        80 ~----~~~~~~~~l~~L~l~~~~~-------~~~~~-~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L  146 (379)
                      .    ..+..+++++.|.+..+..       ..+|. +..+ .+||.|.+.++.        ...+|..+  .+.+|+.|
T Consensus       547 ~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~--------l~~lP~~f--~~~~L~~L  616 (1153)
T PLN03210        547 LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP--------LRCMPSNF--RPENLVKL  616 (1153)
T ss_pred             eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC--------CCCCCCcC--CccCCcEE
Confidence            0    0122344555555543321       01221 1122 235555555422        33344332  34555566


Q ss_pred             EecCCC---CCccccCCCCCcEEEeecCC-CCCcccccCcCCCcEEEeeCC-cCcccchhhcCCCCCCEEeccCCCCCcc
Q 016966          147 NLTDMI---LPSSLGLLSNLRTLSLCSCG-LPDISFVGYLKKLEILCLRGS-DIVKLPVEVGELTWLKLLDLRDCCFLKV  221 (379)
Q Consensus       147 ~l~~~~---lp~~i~~l~~L~~L~l~~~~-l~~~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~~~~  221 (379)
                      ++.++.   +|..+..+++|++|+++++. +..++.++.+++|++|++++| .+..+|..++.+++|++|++++|.....
T Consensus       617 ~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~  696 (1153)
T PLN03210        617 QMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEI  696 (1153)
T ss_pred             ECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCc
Confidence            665555   45555555556666665544 333344555555566665555 3445555555555555555555555555


Q ss_pred             cChhhhCCCCCCcEEEecCC---------------------CCcChhhhh------------------------------
Q 016966          222 IPPNILSKLSHLEELYIGRE---------------------SFVDWEEEV------------------------------  250 (379)
Q Consensus       222 ~~~~~l~~l~~L~~L~l~~~---------------------~~~~~~~~~------------------------------  250 (379)
                      +|...  ++++|+.|.+++|                     .+...+...                              
T Consensus       697 Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~  774 (1153)
T PLN03210        697 LPTGI--NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMT  774 (1153)
T ss_pred             cCCcC--CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhh
Confidence            55431  3444444444433                     322211000                              


Q ss_pred             -------------hcccccchHhhcCCCCCcEEEeecc-CCCCCCccccccCCcEEEEEeecccccCcccc-cceEEEEe
Q 016966          251 -------------EGVKNASLEELKHLPNLTSLEVHVR-DVSSLPRGLLLEKLERYSIYIRRYFSRKTGIW-CRQFRVEL  315 (379)
Q Consensus       251 -------------~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~l  315 (379)
                                   ......++..++.+++|+.|++++| .+..+|....+++|+.|+++.+..... ++.. .+...|++
T Consensus       775 ~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~-~p~~~~nL~~L~L  853 (1153)
T PLN03210        775 MLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRT-FPDISTNISDLNL  853 (1153)
T ss_pred             hccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccc-ccccccccCEeEC
Confidence                         0011124566777777888888754 455777666677788887754433221 2222 23447788


Q ss_pred             --CCcccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCcc
Q 016966          316 --NNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLAL  372 (379)
Q Consensus       316 --~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~  372 (379)
                        +....+|.++..+ ++|+.|++.+|+  .++.++.....  +++|+.|++++|+.++
T Consensus       854 s~n~i~~iP~si~~l-~~L~~L~L~~C~--~L~~l~~~~~~--L~~L~~L~l~~C~~L~  907 (1153)
T PLN03210        854 SRTGIEEVPWWIEKF-SNLSFLDMNGCN--NLQRVSLNISK--LKHLETVDFSDCGALT  907 (1153)
T ss_pred             CCCCCccChHHHhcC-CCCCEEECCCCC--CcCccCccccc--ccCCCeeecCCCcccc
Confidence              4445588888874 999999999999  89998876544  8999999999998876

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.88  E-value=7.1e-22  Score=205.96  Aligned_cols=264  Identities=21%  Similarity=0.243  Sum_probs=146.0

Q ss_pred             cCCccEEEEeCCCC-CCCCCC-C-CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCcccc
Q 016966           86 IKHFTSIVLHGIKP-NLLPEV-L-ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLG  158 (379)
Q Consensus        86 ~~~l~~L~l~~~~~-~~~~~~-~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~  158 (379)
                      +++++.|++++|.+ ..+|.. . .+++|+.|++++|.+.       ..+|.   ..+++|++|++++|.    .|..++
T Consensus        92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~-------~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~  161 (968)
T PLN00113         92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT-------GSIPR---GSIPNLETLDLSNNMLSGEIPNDIG  161 (968)
T ss_pred             CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccc-------cccCc---cccCCCCEEECcCCcccccCChHHh
Confidence            44555555555544 234331 1 4455555555554331       12222   234555555555554    455556


Q ss_pred             CCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCc-ccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcE
Q 016966          159 LLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIV-KLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEE  235 (379)
Q Consensus       159 ~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  235 (379)
                      .+++|++|++++|.+..  |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++
T Consensus       162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~  240 (968)
T PLN00113        162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNH  240 (968)
T ss_pred             cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCE
Confidence            66666666666665543  455566666666666666554 45555666666666666665555555554 466666666


Q ss_pred             EEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC-CCCccc-cccCCcEEEEEeecccccC---cccccce
Q 016966          236 LYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS-SLPRGL-LLEKLERYSIYIRRYFSRK---TGIWCRQ  310 (379)
Q Consensus       236 L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~---~~~~~~~  310 (379)
                      |++++|.+.+.          .+..++.+++|+.|+++.|.+. .+|..+ .+++|+.|+++.+......   +..+++.
T Consensus       241 L~L~~n~l~~~----------~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  310 (968)
T PLN00113        241 LDLVYNNLTGP----------IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL  310 (968)
T ss_pred             EECcCceeccc----------cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCC
Confidence            66666655432          3556667777777777766665 455544 5667777776544332111   1223344


Q ss_pred             EEEEe-CCcc--cchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccCCC
Q 016966          311 FRVEL-NNKI--CLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNPA  375 (379)
Q Consensus       311 ~~L~l-~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  375 (379)
                      ..|.+ .+..  ..|..+..+ ++|+.|++.+|.  ....+|..+..  +++|+.|++++|......|
T Consensus       311 ~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~--l~~~~p~~l~~--~~~L~~L~Ls~n~l~~~~p  373 (968)
T PLN00113        311 EILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNK--FSGEIPKNLGK--HNNLTVLDLSTNNLTGEIP  373 (968)
T ss_pred             cEEECCCCccCCcCChhHhcC-CCCCEEECcCCC--CcCcCChHHhC--CCCCcEEECCCCeeEeeCC
Confidence            46666 2222  245555554 777777777776  33355554433  7778888887777654433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.88  E-value=8.9e-22  Score=205.23  Aligned_cols=268  Identities=22%  Similarity=0.254  Sum_probs=176.5

Q ss_pred             ccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCC
Q 016966           85 TIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLL  160 (379)
Q Consensus        85 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l  160 (379)
                      .++++++|++++|.+....+...+++|++|++++|.+       ...+|.. +..+++|++|++++|.    +|..++++
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~-------~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l  187 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNML-------SGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNL  187 (968)
T ss_pred             cCCCCCEEECcCCccccccCccccCCCCEEECcCCcc-------cccCChH-HhcCCCCCEEECccCcccccCChhhhhC
Confidence            5678999999999884333335688899999999765       3345544 5788999999998887    77788889


Q ss_pred             CCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCc-ccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEE
Q 016966          161 SNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIV-KLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELY  237 (379)
Q Consensus       161 ~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  237 (379)
                      ++|++|++++|.+..  |..++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|+.|+
T Consensus       188 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~  266 (968)
T PLN00113        188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLF  266 (968)
T ss_pred             cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEE
Confidence            999999999988776  788888899999999988877 67888888999999999888777777776 78888888888


Q ss_pred             ecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC-CCCccc-cccCCcEEEEEeecccccC---cccccceEE
Q 016966          238 IGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS-SLPRGL-LLEKLERYSIYIRRYFSRK---TGIWCRQFR  312 (379)
Q Consensus       238 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~---~~~~~~~~~  312 (379)
                      +++|.+.+.          .+..+..+++|+.|++++|.+. .+|..+ .+++|+.|++..+......   ...+++...
T Consensus       267 L~~n~l~~~----------~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  336 (968)
T PLN00113        267 LYQNKLSGP----------IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV  336 (968)
T ss_pred             CcCCeeecc----------CchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCE
Confidence            888877643          2445555566666666655554 344333 4555555555433322111   112222334


Q ss_pred             EEe-CCcc--cchHHHHHH-----------------------hcccceeeccccccccccccccccccccCCCCcEEEec
Q 016966          313 VEL-NNKI--CLKDSLIVQ-----------------------LQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLE  366 (379)
Q Consensus       313 L~l-~~~~--~~~~~~~~~-----------------------~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~  366 (379)
                      |.+ .+..  .+|..+..+                       +++|+.|++.+|.  ....+|..+.  .+++|+.|++.
T Consensus       337 L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~--l~~~~p~~~~--~~~~L~~L~L~  412 (968)
T PLN00113        337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS--LEGEIPKSLG--ACRSLRRVRLQ  412 (968)
T ss_pred             EECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE--ecccCCHHHh--CCCCCCEEECc
Confidence            444 1111  133333332                       1445555555554  2223333332  37788888888


Q ss_pred             CCCCccCCC
Q 016966          367 GSDLALNPA  375 (379)
Q Consensus       367 ~c~~l~~~~  375 (379)
                      +|.....+|
T Consensus       413 ~n~l~~~~p  421 (968)
T PLN00113        413 DNSFSGELP  421 (968)
T ss_pred             CCEeeeECC
Confidence            887765444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.85  E-value=1.3e-23  Score=193.56  Aligned_cols=270  Identities=19%  Similarity=0.260  Sum_probs=183.1

Q ss_pred             CccCCccEEEEeCCCCCCC-CCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccC
Q 016966           84 STIKHFTSIVLHGIKPNLL-PEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGL  159 (379)
Q Consensus        84 ~~~~~l~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~  159 (379)
                      ..+.++.+|++.+|.+..+ ..+..++.||++++..|.+.      ...+|+++| .+..|.+|||++|.   .|..+.+
T Consensus        52 ~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LK------nsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~  124 (1255)
T KOG0444|consen   52 SRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLK------NSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEY  124 (1255)
T ss_pred             HHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccc------cCCCCchhc-ccccceeeecchhhhhhcchhhhh
Confidence            4567888999999888444 45668999999999998765      346888887 58999999999998   8888888


Q ss_pred             CCCCcEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEE
Q 016966          160 LSNLRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELY  237 (379)
Q Consensus       160 l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  237 (379)
                      -+++-+|++++|.|.. | +-+-+++.|-+|++++|++..+|+.+.++.+|++|.+++|.....--.. +..+++|++|.
T Consensus       125 AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLh  203 (1255)
T KOG0444|consen  125 AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLH  203 (1255)
T ss_pred             hcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhhh
Confidence            8999999999999988 6 4456889999999999999999999999999999999987543222222 45566677777


Q ss_pred             ecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc-cccCCcEEEEEeeccc--ccCcccccceE---
Q 016966          238 IGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL-LLEKLERYSIYIRRYF--SRKTGIWCRQF---  311 (379)
Q Consensus       238 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~--~~~~~~~~~~~---  311 (379)
                      +++..-+-..         +|..+..+.+|+.+++++|++..+|.-+ .+++|..|+++.+...  ....+.|.+..   
T Consensus       204 ms~TqRTl~N---------~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLN  274 (1255)
T KOG0444|consen  204 MSNTQRTLDN---------IPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLN  274 (1255)
T ss_pred             cccccchhhc---------CCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhc
Confidence            7765443322         4555555666666666666666555544 4555555555443322  11112222211   


Q ss_pred             --------------------EEEe--------------------------CCccc-chHHHHHHhcccceeecccccccc
Q 016966          312 --------------------RVEL--------------------------NNKIC-LKDSLIVQLQRIEDLELSELQEQD  344 (379)
Q Consensus       312 --------------------~L~l--------------------------~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~  344 (379)
                                          +|.+                          ++... .|.++.++ .+|+.|.|..|+   
T Consensus       275 lSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC-~kL~kL~L~~Nr---  350 (1255)
T KOG0444|consen  275 LSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRC-VKLQKLKLDHNR---  350 (1255)
T ss_pred             cccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhh-HHHHHhcccccc---
Confidence                                1111                          22222 45555554 666666666665   


Q ss_pred             ccccccccccccCCCCcEEEecCCCCccCCCC
Q 016966          345 VDYFRNELVKVGSSHLKRLRLEGSDLALNPAE  376 (379)
Q Consensus       345 l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  376 (379)
                      +-.+|+.+..  +|.|+.|++.+||.+-+||.
T Consensus       351 LiTLPeaIHl--L~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  351 LITLPEAIHL--LPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             eeechhhhhh--cCCcceeeccCCcCccCCCC
Confidence            5566665554  67777777777777777764

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.83  E-value=4.9e-22  Score=183.28  Aligned_cols=249  Identities=20%  Similarity=0.284  Sum_probs=190.6

Q ss_pred             CCccCCccEEEEeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCcccc
Q 016966           83 GSTIKHFTSIVLHGIKPNLLPEVL-ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLG  158 (379)
Q Consensus        83 ~~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~  158 (379)
                      +-.++.++.|++++|.+..+|... ..+++-.|+++.|.        +..+|...|-++..|-.|||++|.   +|..+.
T Consensus        99 iF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~--------IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~R  170 (1255)
T KOG0444|consen   99 IFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN--------IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIR  170 (1255)
T ss_pred             hcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc--------cccCCchHHHhhHhHhhhccccchhhhcCHHHH
Confidence            345677888999999888888655 77788889998865        556888888899999999999998   888999


Q ss_pred             CCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCc--ccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCc
Q 016966          159 LLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIV--KLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLE  234 (379)
Q Consensus       159 ~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  234 (379)
                      .|.+|+.|.+++|.+..  ...+-.+++|++|.+++++-+  .+|.++..+.+|+.++++.|. +..+|.- +.++++|+
T Consensus       171 RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPec-ly~l~~Lr  248 (1255)
T KOG0444|consen  171 RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPEC-LYKLRNLR  248 (1255)
T ss_pred             HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHH-Hhhhhhhh
Confidence            99999999999998766  566777778888888887443  778888888888888888744 5667766 57788888


Q ss_pred             EEEecCCCCcChhhhh------------hcccccchHhhcCCCCCcEEEeeccCCC--CCCccc-cccCCcEEEEEeecc
Q 016966          235 ELYIGRESFVDWEEEV------------EGVKNASLEELKHLPNLTSLEVHVRDVS--SLPRGL-LLEKLERYSIYIRRY  299 (379)
Q Consensus       235 ~L~l~~~~~~~~~~~~------------~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~-~~~~L~~L~l~~~~~  299 (379)
                      .|++++|.++...-.+            ..+...+|..++++++|+.|....|++.  .+|+.+ .+.+|+.+....+..
T Consensus       249 rLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L  328 (1255)
T KOG0444|consen  249 RLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL  328 (1255)
T ss_pred             eeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence            8888888776543111            1255568889999999999999988877  899888 678888777644433


Q ss_pred             cccCcc----cccceEEEEe--CCcccchHHHHHHhcccceeecccccccccc
Q 016966          300 FSRKTG----IWCRQFRVEL--NNKICLKDSLIVQLQRIEDLELSELQEQDVD  346 (379)
Q Consensus       300 ~~~~~~----~~~~~~~L~l--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~  346 (379)
                      .  .+|    ..+.+..|.+  +..+.+|+.|.-+ +-|+.|+++.|+  .+.
T Consensus       329 E--lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL-~~l~vLDlreNp--nLV  376 (1255)
T KOG0444|consen  329 E--LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLL-PDLKVLDLRENP--NLV  376 (1255)
T ss_pred             c--cCchhhhhhHHHHHhcccccceeechhhhhhc-CCcceeeccCCc--Ccc
Confidence            2  222    2233346777  7778899999885 999999999999  554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.80  E-value=5.6e-21  Score=174.91  Aligned_cols=245  Identities=19%  Similarity=0.225  Sum_probs=164.9

Q ss_pred             CCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCc-cccCCCCCcEEEeecCCCCC--cccccCc
Q 016966          109 PQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPS-SLGLLSNLRTLSLCSCGLPD--ISFVGYL  182 (379)
Q Consensus       109 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~-~i~~l~~L~~L~l~~~~l~~--~~~~~~l  182 (379)
                      .+++.|++.+|.+        +.+..+.|.++.+|-+|.|+.|.   +|. .+.+|++|+.|+|.+|.|..  .-.+..|
T Consensus       173 ~ni~~L~La~N~I--------t~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL  244 (873)
T KOG4194|consen  173 VNIKKLNLASNRI--------TTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGL  244 (873)
T ss_pred             CCceEEeeccccc--------cccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCc
Confidence            3455555555432        23333445556666666666666   443 45556667777776666555  3455566


Q ss_pred             CCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhh
Q 016966          183 KKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEEL  261 (379)
Q Consensus       183 ~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l  261 (379)
                      ++|+.|.+..|++..+.++ +..|.++++|++..|.. ..+-.+++.+++.|+.|++++|.+....          ++..
T Consensus       245 ~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l-~~vn~g~lfgLt~L~~L~lS~NaI~rih----------~d~W  313 (873)
T KOG4194|consen  245 PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL-QAVNEGWLFGLTSLEQLDLSYNAIQRIH----------IDSW  313 (873)
T ss_pred             hhhhhhhhhhcCcccccCcceeeecccceeecccchh-hhhhcccccccchhhhhccchhhhheee----------cchh
Confidence            6677777777766666653 55778888888888654 4444555788889999999988887764          6777


Q ss_pred             cCCCCCcEEEeeccCCCCCCccc--cccCCcEEEEEeecccccC---cccccceEEEEe-CCccc--chH---HHHHHhc
Q 016966          262 KHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSIYIRRYFSRK---TGIWCRQFRVEL-NNKIC--LKD---SLIVQLQ  330 (379)
Q Consensus       262 ~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~l-~~~~~--~~~---~~~~~~~  330 (379)
                      ..+++|+.|+++.|.++++++.-  .+..|++|.++.+...-..   +....++.+|++ .+...  +++   .+.+ ++
T Consensus       314 sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g-l~  392 (873)
T KOG4194|consen  314 SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG-LP  392 (873)
T ss_pred             hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhcc-ch
Confidence            78889999999999999887754  5788888888666543222   222233346666 22222  222   2344 49


Q ss_pred             ccceeeccccccccccccccccccccCCCCcEEEecCCCCccCCCCC
Q 016966          331 RIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNPAES  377 (379)
Q Consensus       331 ~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  377 (379)
                      +|+.|.+.+|+   ++.++...+ .+++.|++|++.+|++.++-++.
T Consensus       393 ~LrkL~l~gNq---lk~I~krAf-sgl~~LE~LdL~~NaiaSIq~nA  435 (873)
T KOG4194|consen  393 SLRKLRLTGNQ---LKSIPKRAF-SGLEALEHLDLGDNAIASIQPNA  435 (873)
T ss_pred             hhhheeecCce---eeecchhhh-ccCcccceecCCCCcceeecccc
Confidence            99999999997   999998776 37999999999999998877665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.77  E-value=1.4e-19  Score=165.84  Aligned_cols=280  Identities=20%  Similarity=0.283  Sum_probs=174.8

Q ss_pred             CccCCccEEEEeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCc-ccc
Q 016966           84 STIKHFTSIVLHGIKPNLLPEVL-ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPS-SLG  158 (379)
Q Consensus        84 ~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~-~i~  158 (379)
                      ..+++++.+++.+|.+..+|.+. ...+|+.|.+..|.+        ..+...-++.++.||+|||+.|.   +|. ++.
T Consensus        99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I--------~sv~se~L~~l~alrslDLSrN~is~i~~~sfp  170 (873)
T KOG4194|consen   99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLI--------SSVTSEELSALPALRSLDLSRNLISEIPKPSFP  170 (873)
T ss_pred             hcCCcceeeeeccchhhhcccccccccceeEEeeecccc--------ccccHHHHHhHhhhhhhhhhhchhhcccCCCCC
Confidence            44556666666666666666655 333466666666543        23344445667788888888877   332 445


Q ss_pred             CCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcE
Q 016966          159 LLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEE  235 (379)
Q Consensus       159 ~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  235 (379)
                      .-.++++|+|++|.|+.  ...+..+.+|.+|.+++|+++.+|. .+.++++|+.|++..|. ++.+....+..+++|+.
T Consensus       171 ~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~n  249 (873)
T KOG4194|consen  171 AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQN  249 (873)
T ss_pred             CCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhh
Confidence            55678888888888877  4677778888888888888888885 56668888888888754 33332222556666666


Q ss_pred             EEecCCCCcChhhhhh-c------------c-cccchHhhcCCCCCcEEEeeccCCCCCCccc--cccCCcEEEEEeecc
Q 016966          236 LYIGRESFVDWEEEVE-G------------V-KNASLEELKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSIYIRRY  299 (379)
Q Consensus       236 L~l~~~~~~~~~~~~~-~------------~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~  299 (379)
                      |.+..|.+........ |            . ....-.++-.++.|+.|++++|.+.++....  ++++|+.|+++.+..
T Consensus       250 lklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i  329 (873)
T KOG4194|consen  250 LKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI  329 (873)
T ss_pred             hhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence            6666665554321100 0            0 0001344556777788888888777554333  678888888866655


Q ss_pred             cccCccccc---ceEEEEe--CCcccchHHHHHHhcccceeeccccccccccc-cccccc-cccCCCCcEEEecCCCCcc
Q 016966          300 FSRKTGIWC---RQFRVEL--NNKICLKDSLIVQLQRIEDLELSELQEQDVDY-FRNELV-KVGSSHLKRLRLEGSDLAL  372 (379)
Q Consensus       300 ~~~~~~~~~---~~~~L~l--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~-~~~~~~L~~L~l~~c~~l~  372 (379)
                      .....+.+.   .+..|.+  +....+.++....+++|+.|+|++|.   +.- +.+... -.++|+|++|++.+|..-.
T Consensus       330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~---ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~  406 (873)
T KOG4194|consen  330 TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE---LSWCIEDAAVAFNGLPSLRKLRLTGNQLKS  406 (873)
T ss_pred             ccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe---EEEEEecchhhhccchhhhheeecCceeee
Confidence            533333332   2236666  33344655555446899999999987   332 222111 1258999999999998776


Q ss_pred             CCC
Q 016966          373 NPA  375 (379)
Q Consensus       373 ~~~  375 (379)
                      ++.
T Consensus       407 I~k  409 (873)
T KOG4194|consen  407 IPK  409 (873)
T ss_pred             cch
Confidence            654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.74  E-value=6.4e-20  Score=161.11  Aligned_cols=269  Identities=23%  Similarity=0.291  Sum_probs=182.8

Q ss_pred             cCCccEEEEeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCcccc-CC
Q 016966           86 IKHFTSIVLHGIKPNLLPEVL-ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLG-LL  160 (379)
Q Consensus        86 ~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~-~l  160 (379)
                      ++.+.+++...|.++.+|+-. .+.+|.-|++..|+        +..+|.  |.++..|+.|+++.|.   +|.... .+
T Consensus       182 m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk--------i~~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L  251 (565)
T KOG0472|consen  182 MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK--------IRFLPE--FPGCSLLKELHVGENQIEMLPAEHLKHL  251 (565)
T ss_pred             HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc--------cccCCC--CCccHHHHHHHhcccHHHhhHHHHhccc
Confidence            667777777777777777533 77777777777755        444553  5677777777777777   666554 77


Q ss_pred             CCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCccc-----------------
Q 016966          161 SNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVI-----------------  222 (379)
Q Consensus       161 ~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~-----------------  222 (379)
                      .++..||+..|++++ |..++.+++|.+||+++|.++.+|.+++++ .|+.|.+.+|.. +.+                 
T Consensus       252 ~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl-rTiRr~ii~~gT~~vLKyLr  329 (565)
T KOG0472|consen  252 NSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL-RTIRREIISKGTQEVLKYLR  329 (565)
T ss_pred             ccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch-HHHHHHHHcccHHHHHHHHH
Confidence            778888888888777 777777888888888888888888778877 777777666510 000                 


Q ss_pred             ---------------------Chh---hhCCCCCCcEEEecCCCCcChhhhhhc--------------------------
Q 016966          223 ---------------------PPN---ILSKLSHLEELYIGRESFVDWEEEVEG--------------------------  252 (379)
Q Consensus       223 ---------------------~~~---~l~~l~~L~~L~l~~~~~~~~~~~~~~--------------------------  252 (379)
                                           +..   ....+.+.+.|.+++-.++..+.++..                          
T Consensus       330 s~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~  409 (565)
T KOG0472|consen  330 SKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVE  409 (565)
T ss_pred             HhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHH
Confidence                                 000   012223444555554444433322211                          


Q ss_pred             -------------ccccchHhhcCCCCCcEEEeeccCCCCCCccc-cccCCcEEEEEeecccccCcccccceE---EEEe
Q 016966          253 -------------VKNASLEELKHLPNLTSLEVHVRDVSSLPRGL-LLEKLERYSIYIRRYFSRKTGIWCRQF---RVEL  315 (379)
Q Consensus       253 -------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~---~L~l  315 (379)
                                   .....+..++.+++|..|++++|-+.++|.++ .+..|+.++++.+.+.  ..|.+....   +..+
T Consensus       410 lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr--~lP~~~y~lq~lEtll  487 (565)
T KOG0472|consen  410 LKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR--MLPECLYELQTLETLL  487 (565)
T ss_pred             HHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccc--cchHHHhhHHHHHHHH
Confidence                         33345677888999999999999999999987 5777999999776443  333332222   2222


Q ss_pred             --CCccc-c-hHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccCC
Q 016966          316 --NNKIC-L-KDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNP  374 (379)
Q Consensus       316 --~~~~~-~-~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  374 (379)
                        ++... + ++++..+ .+|..|++.+|.   +..+|..++.  +.+|++|++++||+...+
T Consensus       488 as~nqi~~vd~~~l~nm-~nL~tLDL~nNd---lq~IPp~Lgn--mtnL~hLeL~gNpfr~Pr  544 (565)
T KOG0472|consen  488 ASNNQIGSVDPSGLKNM-RNLTTLDLQNND---LQQIPPILGN--MTNLRHLELDGNPFRQPR  544 (565)
T ss_pred             hccccccccChHHhhhh-hhcceeccCCCc---hhhCChhhcc--ccceeEEEecCCccCCCH
Confidence              23333 3 4557775 999999999998   8999987754  999999999999998543

>PLN03210 Resistant to P

Probab=99.74  E-value=7.3e-17  Score=169.48  Aligned_cols=281  Identities=21%  Similarity=0.247  Sum_probs=186.8

Q ss_pred             cCCccEEEEeCCCCCCC--C--CCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCcccc
Q 016966           86 IKHFTSIVLHGIKPNLL--P--EVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLG  158 (379)
Q Consensus        86 ~~~l~~L~l~~~~~~~~--~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~  158 (379)
                      ..+++.+.+....+..+  .  .+..+++|+.|.+..+..... ......+|..+..-..+||.|++.++.   +|..+ 
T Consensus       531 ~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~-~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-  608 (1153)
T PLN03210        531 TKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQK-KEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-  608 (1153)
T ss_pred             cceeeEEEeccCccceeeecHHHHhcCccccEEEEeccccccc-ccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-
Confidence            35667777665555322  1  245899999999876432110 000224565543334579999999987   88776 


Q ss_pred             CCCCCcEEEeecCCCCC-cccccCcCCCcEEEeeCC-cCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEE
Q 016966          159 LLSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGS-DIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEEL  236 (379)
Q Consensus       159 ~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L  236 (379)
                      .+.+|+.|++.++.+.. +..+..+++|++|+++++ .+..+| .+..+++|++|++++|.....+|.. ++++++|+.|
T Consensus       609 ~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L  686 (1153)
T PLN03210        609 RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDL  686 (1153)
T ss_pred             CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEE
Confidence            57899999999999988 788889999999999988 567888 5889999999999999999999987 7999999999


Q ss_pred             EecCCCCc-Chhhhhh-c-------ccccchHhh-cCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeeccc---cc-
Q 016966          237 YIGRESFV-DWEEEVE-G-------VKNASLEEL-KHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYF---SR-  302 (379)
Q Consensus       237 ~l~~~~~~-~~~~~~~-~-------~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~-  302 (379)
                      ++.+|... ..+.... .       ........+ ...++|+.|++.++.+..+|..+.+++|+.|.+......   .. 
T Consensus       687 ~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~  766 (1153)
T PLN03210        687 DMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERV  766 (1153)
T ss_pred             eCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccc
Confidence            99987533 2210000 0       000000000 012345556666666666666555666666665321110   00 


Q ss_pred             --C----cccccceEEEEeCC---cccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccC
Q 016966          303 --K----TGIWCRQFRVELNN---KICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALN  373 (379)
Q Consensus       303 --~----~~~~~~~~~L~l~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~  373 (379)
                        .    ....++...|.+.+   ...+|..+..+ ++|+.|++.+|.  .++.+|...   .+++|++|++++|..++.
T Consensus       767 ~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L-~~L~~L~Ls~C~--~L~~LP~~~---~L~sL~~L~Ls~c~~L~~  840 (1153)
T PLN03210        767 QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNL-HKLEHLEIENCI--NLETLPTGI---NLESLESLDLSGCSRLRT  840 (1153)
T ss_pred             cccchhhhhccccchheeCCCCCCccccChhhhCC-CCCCEEECCCCC--CcCeeCCCC---CccccCEEECCCCCcccc
Confidence              0    00112334677722   33478888875 999999999998  888888755   388999999999988876


Q ss_pred             CCC
Q 016966          374 PAE  376 (379)
Q Consensus       374 ~~~  376 (379)
                      .|+
T Consensus       841 ~p~  843 (1153)
T PLN03210        841 FPD  843 (1153)
T ss_pred             ccc
Confidence            654

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.67  E-value=1.2e-19  Score=159.49  Aligned_cols=213  Identities=24%  Similarity=0.264  Sum_probs=106.7

Q ss_pred             CCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccC
Q 016966          140 MIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRD  215 (379)
Q Consensus       140 l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~  215 (379)
                      +..++.|++++++   +|..++.+..|+.++++.|.+.. +++++.+..|+.++..+|++..+|..++.+.+|..+++.+
T Consensus        90 l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~  169 (565)
T KOG0472|consen   90 LEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG  169 (565)
T ss_pred             HHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc
Confidence            4444444444444   44444444444444444444444 4444444444444444444444444444444444444444


Q ss_pred             CCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEE
Q 016966          216 CCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIY  295 (379)
Q Consensus       216 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~  295 (379)
                      |. ...+|+..+ +++.|++|+...|-+..           +|++++.+.+|..|++..|++..+|+.-.|..|.++.+.
T Consensus       170 n~-l~~l~~~~i-~m~~L~~ld~~~N~L~t-----------lP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g  236 (565)
T KOG0472|consen  170 NK-LKALPENHI-AMKRLKHLDCNSNLLET-----------LPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVG  236 (565)
T ss_pred             cc-hhhCCHHHH-HHHHHHhcccchhhhhc-----------CChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhc
Confidence            22 223333322 24444444444433332           344444444444444444444444432234444444432


Q ss_pred             eecccc--c-CcccccceEEEEe--CCcccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCC
Q 016966          296 IRRYFS--R-KTGIWCRQFRVEL--NNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDL  370 (379)
Q Consensus       296 ~~~~~~--~-~~~~~~~~~~L~l--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~  370 (379)
                      .+....  . ....++....|++  +.....|+.+.-+ ++|++|++++|.   ++.+|.+++.  + .|+.|.+.|||.
T Consensus       237 ~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clL-rsL~rLDlSNN~---is~Lp~sLgn--l-hL~~L~leGNPl  309 (565)
T KOG0472|consen  237 ENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLL-RSLERLDLSNND---ISSLPYSLGN--L-HLKFLALEGNPL  309 (565)
T ss_pred             ccHHHhhHHHHhcccccceeeeccccccccCchHHHHh-hhhhhhcccCCc---cccCCccccc--c-eeeehhhcCCch
Confidence            221110  0 0001222234444  3334578877775 889999999997   8888887754  6 888999999887


Q ss_pred             cc
Q 016966          371 AL  372 (379)
Q Consensus       371 l~  372 (379)
                      -+
T Consensus       310 rT  311 (565)
T KOG0472|consen  310 RT  311 (565)
T ss_pred             HH
Confidence            54

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.60  E-value=1.2e-17  Score=130.69  Aligned_cols=163  Identities=25%  Similarity=0.377  Sum_probs=124.3

Q ss_pred             CCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC-
Q 016966          100 NLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD-  175 (379)
Q Consensus       100 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~-  175 (379)
                      .+++....+++++.|.++.|+        ...+|+.+ ..+++|++|++.+|.   +|.+++.+++|+.|++.-|++.. 
T Consensus        24 ~~~~gLf~~s~ITrLtLSHNK--------l~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~l   94 (264)
T KOG0617|consen   24 EELPGLFNMSNITRLTLSHNK--------LTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNIL   94 (264)
T ss_pred             hhcccccchhhhhhhhcccCc--------eeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcC
Confidence            445555566677777777754        34455554 567788888888877   88888888888888888888777 


Q ss_pred             cccccCcCCCcEEEeeCCcCc--ccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcc
Q 016966          176 ISFVGYLKKLEILCLRGSDIV--KLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGV  253 (379)
Q Consensus       176 ~~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  253 (379)
                      |..++.++-|++|++.+|++.  .+|..+..|+.|+.|.+++|. ...+|.. ++++++||.|.+..|.+.+        
T Consensus        95 prgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll~--------  164 (264)
T KOG0617|consen   95 PRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLLS--------  164 (264)
T ss_pred             ccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchhh--------
Confidence            888888888888888888776  677777778888888888844 5667776 6888888888888877765        


Q ss_pred             cccchHhhcCCCCCcEEEeeccCCCCCCccc
Q 016966          254 KNASLEELKHLPNLTSLEVHVRDVSSLPRGL  284 (379)
Q Consensus       254 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  284 (379)
                         ++.+++.++.|++|.|.+|.++.+|..+
T Consensus       165 ---lpkeig~lt~lrelhiqgnrl~vlppel  192 (264)
T KOG0617|consen  165 ---LPKEIGDLTRLRELHIQGNRLTVLPPEL  192 (264)
T ss_pred             ---CcHHHHHHHHHHHHhcccceeeecChhh
Confidence               5788888888888888888888777764

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.57  E-value=2.3e-17  Score=129.19  Aligned_cols=143  Identities=27%  Similarity=0.396  Sum_probs=76.7

Q ss_pred             CCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccC
Q 016966          140 MIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRD  215 (379)
Q Consensus       140 l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~  215 (379)
                      +.++..|.+++|.   .|..|..+.+|+.|++.+|.+++ |.+++.+++|+.|++.-|++..+|.+++.+|.|+.|++.+
T Consensus        32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlty  111 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY  111 (264)
T ss_pred             hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence            4555555555555   55555555555555555555555 5555555555555555555555555555555555555555


Q ss_pred             CCCCcc-cChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc-cccCCcEEE
Q 016966          216 CCFLKV-IPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL-LLEKLERYS  293 (379)
Q Consensus       216 ~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~  293 (379)
                      |+.... +|.. +..+..|+-|+++.|.+.-           ++.+++++++|+.|.++.|.+-++|..+ .+..|+.|.
T Consensus       112 nnl~e~~lpgn-ff~m~tlralyl~dndfe~-----------lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelh  179 (264)
T KOG0617|consen  112 NNLNENSLPGN-FFYMTTLRALYLGDNDFEI-----------LPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELH  179 (264)
T ss_pred             cccccccCCcc-hhHHHHHHHHHhcCCCccc-----------CChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHh
Confidence            444332 3333 4445555555555555443           3455555555555555555555555544 344444443


Q ss_pred             E
Q 016966          294 I  294 (379)
Q Consensus       294 l  294 (379)
                      +
T Consensus       180 i  180 (264)
T KOG0617|consen  180 I  180 (264)
T ss_pred             c
Confidence            3

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.57  E-value=1.7e-14  Score=142.96  Aligned_cols=240  Identities=18%  Similarity=0.239  Sum_probs=134.0

Q ss_pred             CccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCCc
Q 016966           88 HFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLR  164 (379)
Q Consensus        88 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~  164 (379)
                      +...|.+.++++..+|... .+.++.|++.+|.+        ..+|..++   .+|++|++++|.   +|..+.  .+|+
T Consensus       179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~L--------tsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~  244 (754)
T PRK15370        179 NKTELRLKILGLTTIPACI-PEQITTLILDNNEL--------KSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQ  244 (754)
T ss_pred             CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCC--------CcCChhhc---cCCCEEECCCCccccCChhhh--cccc
Confidence            3455666666665555422 24566666666543        23444432   356666666665   554332  3566


Q ss_pred             EEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCC
Q 016966          165 TLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESF  243 (379)
Q Consensus       165 ~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  243 (379)
                      .|++++|.+.. |..+.  .+|++|++++|+++.+|..+.  ++|++|++++|.. ..+|.. +.  ++|+.|++++|.+
T Consensus       245 ~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~L-t~LP~~-lp--~sL~~L~Ls~N~L  316 (754)
T PRK15370        245 EMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSI-RTLPAH-LP--SGITHLNVQSNSL  316 (754)
T ss_pred             EEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCcc-ccCccc-ch--hhHHHHHhcCCcc
Confidence            66676666665 44432  356667776666666665443  3566676666543 334432 11  3566666666655


Q ss_pred             cChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeecccccCcc-cc-cceEEEEe--CCcc
Q 016966          244 VDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTG-IW-CRQFRVEL--NNKI  319 (379)
Q Consensus       244 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~-~~~~~L~l--~~~~  319 (379)
                      ...           +..+  .++|+.|.+.+|.++.+|..+ .++|+.|+++.+...  .+| .+ +....|++  +...
T Consensus       317 t~L-----------P~~l--~~sL~~L~Ls~N~Lt~LP~~l-~~sL~~L~Ls~N~L~--~LP~~lp~~L~~LdLs~N~Lt  380 (754)
T PRK15370        317 TAL-----------PETL--PPGLKTLEAGENALTSLPASL-PPELQVLDVSKNQIT--VLPETLPPTITTLDVSRNALT  380 (754)
T ss_pred             ccC-----------Cccc--cccceeccccCCccccCChhh-cCcccEEECCCCCCC--cCChhhcCCcCEEECCCCcCC
Confidence            542           1111  145666666666666665543 256666666444332  111 11 22235566  2333


Q ss_pred             cchHHHHHHhcccceeeccccccccccccccccc--cccCCCCcEEEecCCCCc
Q 016966          320 CLKDSLIVQLQRIEDLELSELQEQDVDYFRNELV--KVGSSHLKRLRLEGSDLA  371 (379)
Q Consensus       320 ~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~--~~~~~~L~~L~l~~c~~l  371 (379)
                      .+|+.+.   +.|+.|++++|.   +..+|..+.  ...+|.+..|++.+|+..
T Consensus       381 ~LP~~l~---~sL~~LdLs~N~---L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        381 NLPENLP---AALQIMQASRNN---LVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CCCHhHH---HHHHHHhhccCC---cccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            4665542   568899999987   777776542  224688899999998863

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.54  E-value=2.4e-13  Score=134.21  Aligned_cols=234  Identities=19%  Similarity=0.157  Sum_probs=156.1

Q ss_pred             ccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCC
Q 016966           85 TIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLS  161 (379)
Q Consensus        85 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~  161 (379)
                      ..++++.|.+.+|.+..+|..  .++|++|++++|.+..        +|.    ..++|+.|++++|.   +|..   ..
T Consensus       220 l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~Lts--------LP~----lp~sL~~L~Ls~N~L~~Lp~l---p~  282 (788)
T PRK15387        220 LPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTS--------LPV----LPPGLLELSIFSNPLTHLPAL---PS  282 (788)
T ss_pred             hhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCc--------ccC----cccccceeeccCCchhhhhhc---hh
Confidence            345789999999988888764  5789999999976543        443    13578889998887   4432   35


Q ss_pred             CCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecC
Q 016966          162 NLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGR  240 (379)
Q Consensus       162 ~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  240 (379)
                      .|+.|++++|.++. |..   +++|+.|++++|.++.+|..   ..+|+.|.+++|.. ..+|..    .++|+.|++++
T Consensus       283 ~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L-~~LP~l----p~~Lq~LdLS~  351 (788)
T PRK15387        283 GLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQL-TSLPTL----PSGLQELSVSD  351 (788)
T ss_pred             hcCEEECcCCcccccccc---ccccceeECCCCccccCCCC---cccccccccccCcc-cccccc----ccccceEecCC
Confidence            67888898888877 442   46789999999988887752   23577777777554 445531    24788888888


Q ss_pred             CCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeecccccCccccc-ceEEEEe--CC
Q 016966          241 ESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTGIWC-RQFRVEL--NN  317 (379)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~l--~~  317 (379)
                      |.+...+           ..   .++|+.|+++.|.+..+|..  ..+|+.|+++.+...  .+|..+ +...|++  +.
T Consensus       352 N~Ls~LP-----------~l---p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt--~LP~l~s~L~~LdLS~N~  413 (788)
T PRK15387        352 NQLASLP-----------TL---PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLT--SLPVLPSELKELMVSGNR  413 (788)
T ss_pred             CccCCCC-----------CC---CcccceehhhccccccCccc--ccccceEEecCCccc--CCCCcccCCCEEEccCCc
Confidence            8877632           11   24566777777777766653  356777777544433  223222 3336666  33


Q ss_pred             cccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccC
Q 016966          318 KICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALN  373 (379)
Q Consensus       318 ~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~  373 (379)
                      ...+|..    +.+|+.|++++|.   ++.+|..+..  +++|+.|++++|+....
T Consensus       414 LssIP~l----~~~L~~L~Ls~Nq---Lt~LP~sl~~--L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        414 LTSLPML----PSGLLSLSVYRNQ---LTRLPESLIH--LSSETTVNLEGNPLSER  460 (788)
T ss_pred             CCCCCcc----hhhhhhhhhccCc---ccccChHHhh--ccCCCeEECCCCCCCch
Confidence            3334431    3567788888886   7788876654  78888888888887643

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.48  E-value=1.9e-15  Score=145.83  Aligned_cols=258  Identities=20%  Similarity=0.225  Sum_probs=165.9

Q ss_pred             CCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCC
Q 016966           87 KHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNL  163 (379)
Q Consensus        87 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L  163 (379)
                      +++++|..+.|.+..........+|+.++++.|.+        ..+| ++...+.+|..+++.+|.   +|..+.....|
T Consensus       219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l--------~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L  289 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNL--------SNLP-EWIGACANLEALNANHNRLVALPLRISRITSL  289 (1081)
T ss_pred             cchheeeeccCcceeeccccccccceeeecchhhh--------hcch-HHHHhcccceEecccchhHHhhHHHHhhhhhH
Confidence            45666666666664333233445677777777553        3455 667778888888888887   77777888888


Q ss_pred             cEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhc-CCCC-CCEEeccCCCCCcccChhhhCCCCCCcEEEecC
Q 016966          164 RTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVG-ELTW-LKLLDLRDCCFLKVIPPNILSKLSHLEELYIGR  240 (379)
Q Consensus       164 ~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~-~l~~-L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  240 (379)
                      ++|.+..|.++. |+....+++|++|++..|.+..+|+.+- .+.. |+.|+.+.+. +...|...=..++.|+.|++.+
T Consensus       290 ~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~-l~~lp~~~e~~~~~Lq~Lylan  368 (1081)
T KOG0618|consen  290 VSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNK-LSTLPSYEENNHAALQELYLAN  368 (1081)
T ss_pred             HHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcc-ccccccccchhhHHHHHHHHhc
Confidence            888888888877 7777778888888888888887776332 2222 5555555432 3344432223455677777777


Q ss_pred             CCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc--cccCCcEEEEEeeccc--ccCcccccceEEEEe-
Q 016966          241 ESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSIYIRRYF--SRKTGIWCRQFRVEL-  315 (379)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~l-  315 (379)
                      |.+++..          .+.+.+.++|+.|.+++|.+..+|...  .++.|+.|.++.+...  ......|..+.+|.. 
T Consensus       369 N~Ltd~c----------~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ah  438 (1081)
T KOG0618|consen  369 NHLTDSC----------FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAH  438 (1081)
T ss_pred             Ccccccc----------hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhc
Confidence            7776543          566777777888888888777777654  5677777777554433  111112333334555 


Q ss_pred             CCc-ccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCC
Q 016966          316 NNK-ICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDL  370 (379)
Q Consensus       316 ~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~  370 (379)
                      .+. ...| .+..+ +.|+.++++.|.   ++.+.-.... .-|+|++|++++|..
T Consensus       439 sN~l~~fP-e~~~l-~qL~~lDlS~N~---L~~~~l~~~~-p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  439 SNQLLSFP-ELAQL-PQLKVLDLSCNN---LSEVTLPEAL-PSPNLKYLDLSGNTR  488 (1081)
T ss_pred             CCceeech-hhhhc-CcceEEecccch---hhhhhhhhhC-CCcccceeeccCCcc
Confidence            333 3455 57775 999999999887   6655432211 137899999999874

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.41  E-value=1.6e-13  Score=125.31  Aligned_cols=259  Identities=18%  Similarity=0.140  Sum_probs=163.4

Q ss_pred             ccCCccEEEEeCCCCC-----CCCC-CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CC
Q 016966           85 TIKHFTSIVLHGIKPN-----LLPE-VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LP  154 (379)
Q Consensus        85 ~~~~l~~L~l~~~~~~-----~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp  154 (379)
                      ....++.+.+.++.+.     .++. ....+.++.+.+.++.+... .. ........+..+++|+.|++++|.    .+
T Consensus        21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~-~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~   98 (319)
T cd00116          21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRI-PR-GLQSLLQGLTKGCGLQELDLSDNALGPDGC   98 (319)
T ss_pred             HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCc-ch-HHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence            3455888888888772     2333 23667788888888554310 00 111122345678899999998887    23


Q ss_pred             ccccCCCC---CcEEEeecCCCCC------cccccCc-CCCcEEEeeCCcCc-----ccchhhcCCCCCCEEeccCCCCC
Q 016966          155 SSLGLLSN---LRTLSLCSCGLPD------ISFVGYL-KKLEILCLRGSDIV-----KLPVEVGELTWLKLLDLRDCCFL  219 (379)
Q Consensus       155 ~~i~~l~~---L~~L~l~~~~l~~------~~~~~~l-~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~  219 (379)
                      ..+..+.+   |++|++++|.+..      ...+..+ ++|+.|++++|.++     .++..+..+++|++|++++|...
T Consensus        99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116          99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence            34444444   9999999998774      2345566 88999999999877     34456677788999999887765


Q ss_pred             cc----cChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCC-ccc--c----ccC
Q 016966          220 KV----IPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLP-RGL--L----LEK  288 (379)
Q Consensus       220 ~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~--~----~~~  288 (379)
                      ..    ++.. +...++|++|++++|.+.+..      ...+...+..+++|+.|++++|.++... ..+  .    .+.
T Consensus       179 ~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~------~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~  251 (319)
T cd00116         179 DAGIRALAEG-LKANCNLEVLDLNNNGLTDEG------ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNIS  251 (319)
T ss_pred             hHHHHHHHHH-HHhCCCCCEEeccCCccChHH------HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCC
Confidence            32    2222 455679999999988876432      1224456677888999999988776311 111  1    267


Q ss_pred             CcEEEEEeecccccCcccccceEEEEeCCcccchHHHHHHhcccceeeccccccccccccccccc---cccC-CCCcEEE
Q 016966          289 LERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELV---KVGS-SHLKRLR  364 (379)
Q Consensus       289 L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~---~~~~-~~L~~L~  364 (379)
                      |+.|++..+....              .....+...+.. +++|+++++++|.   +...+....   ...+ +.|+.|+
T Consensus       252 L~~L~l~~n~i~~--------------~~~~~l~~~~~~-~~~L~~l~l~~N~---l~~~~~~~~~~~~~~~~~~~~~~~  313 (319)
T cd00116         252 LLTLSLSCNDITD--------------DGAKDLAEVLAE-KESLLELDLRGNK---FGEEGAQLLAESLLEPGNELESLW  313 (319)
T ss_pred             ceEEEccCCCCCc--------------HHHHHHHHHHhc-CCCccEEECCCCC---CcHHHHHHHHHHHhhcCCchhhcc
Confidence            8888775443210              011123333444 3789999999997   444322111   1234 7899999


Q ss_pred             ecCCCC
Q 016966          365 LEGSDL  370 (379)
Q Consensus       365 l~~c~~  370 (379)
                      +.+++.
T Consensus       314 ~~~~~~  319 (319)
T cd00116         314 VKDDSF  319 (319)
T ss_pred             cCCCCC
Confidence            988763

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.41  E-value=1.6e-12  Score=128.97  Aligned_cols=219  Identities=21%  Similarity=0.236  Sum_probs=135.1

Q ss_pred             CccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC-cccccCcCCC
Q 016966          110 QLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD-ISFVGYLKKL  185 (379)
Q Consensus       110 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L  185 (379)
                      +...|.+.++.+        ..+|..+   .++|+.|++++|.   +|..+.  .+|++|++++|.++. |..+.  .+|
T Consensus       179 ~~~~L~L~~~~L--------tsLP~~I---p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L  243 (754)
T PRK15370        179 NKTELRLKILGL--------TTIPACI---PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTI  243 (754)
T ss_pred             CceEEEeCCCCc--------CcCCccc---ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccc
Confidence            456677776443        3345433   2467788888877   665443  478888888887776 54432  368


Q ss_pred             cEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCC
Q 016966          186 EILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLP  265 (379)
Q Consensus       186 ~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~  265 (379)
                      +.|++++|.+..+|..+.  .+|+.|++++|.. ..+|.. +.  ++|+.|++++|.+...           +..+.  +
T Consensus       244 ~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L-~~LP~~-l~--~sL~~L~Ls~N~Lt~L-----------P~~lp--~  304 (754)
T PRK15370        244 QEMELSINRITELPERLP--SALQSLDLFHNKI-SCLPEN-LP--EELRYLSVYDNSIRTL-----------PAHLP--S  304 (754)
T ss_pred             cEEECcCCccCcCChhHh--CCCCEEECcCCcc-Cccccc-cC--CCCcEEECCCCccccC-----------cccch--h
Confidence            888888888877776554  4688888877553 456654 22  4788888888777653           22221  3


Q ss_pred             CCcEEEeeccCCCCCCccccccCCcEEEEEeecccccCccccc-ceEEEEe--CCcccchHHHHHHhcccceeecccccc
Q 016966          266 NLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTGIWC-RQFRVEL--NNKICLKDSLIVQLQRIEDLELSELQE  342 (379)
Q Consensus       266 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~l--~~~~~~~~~~~~~~~~L~~L~l~~~~~  342 (379)
                      +|+.|++++|.++.+|..+ .++|+.|.+..+.... ....++ +...|++  ++...+|..+   .++|+.|++++|. 
T Consensus       305 sL~~L~Ls~N~Lt~LP~~l-~~sL~~L~Ls~N~Lt~-LP~~l~~sL~~L~Ls~N~L~~LP~~l---p~~L~~LdLs~N~-  378 (754)
T PRK15370        305 GITHLNVQSNSLTALPETL-PPGLKTLEAGENALTS-LPASLPPELQVLDVSKNQITVLPETL---PPTITTLDVSRNA-  378 (754)
T ss_pred             hHHHHHhcCCccccCCccc-cccceeccccCCcccc-CChhhcCcccEEECCCCCCCcCChhh---cCCcCEEECCCCc-
Confidence            5777888888877776543 3677777775544331 111122 3336666  2333355433   3677778887776 


Q ss_pred             ccccccccccccccCCCCcEEEecCCCCccCC
Q 016966          343 QDVDYFRNELVKVGSSHLKRLRLEGSDLALNP  374 (379)
Q Consensus       343 ~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  374 (379)
                        +..+|..+    .+.|+.|++++|.....|
T Consensus       379 --Lt~LP~~l----~~sL~~LdLs~N~L~~LP  404 (754)
T PRK15370        379 --LTNLPENL----PAALQIMQASRNNLVRLP  404 (754)
T ss_pred             --CCCCCHhH----HHHHHHHhhccCCcccCc
Confidence              66666543    245777777777766554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.40  E-value=2.5e-13  Score=123.94  Aligned_cols=235  Identities=19%  Similarity=0.142  Sum_probs=151.8

Q ss_pred             CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----------CCccccCCCCCcEEEeecCCCCC-
Q 016966          107 ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----------LPSSLGLLSNLRTLSLCSCGLPD-  175 (379)
Q Consensus       107 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----------lp~~i~~l~~L~~L~l~~~~l~~-  175 (379)
                      .+.+|+.|.+.++.+++..   ...++ ..+...+.++.|+++++.          ++..+..+++|++|++++|.+.. 
T Consensus        21 ~l~~L~~l~l~~~~l~~~~---~~~i~-~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~   96 (319)
T cd00116          21 KLLCLQVLRLEGNTLGEEA---AKALA-SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD   96 (319)
T ss_pred             HHhhccEEeecCCCCcHHH---HHHHH-HHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence            5666899999986653310   11222 334567778999988875          22356778899999999998764 


Q ss_pred             -cccccCcCC---CcEEEeeCCcCc-----ccchhhcCC-CCCCEEeccCCCCCcc----cChhhhCCCCCCcEEEecCC
Q 016966          176 -ISFVGYLKK---LEILCLRGSDIV-----KLPVEVGEL-TWLKLLDLRDCCFLKV----IPPNILSKLSHLEELYIGRE  241 (379)
Q Consensus       176 -~~~~~~l~~---L~~L~l~~~~l~-----~lp~~~~~l-~~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~~  241 (379)
                       +..+..+.+   |++|++++|.+.     .+...+..+ ++|+.|++++|.....    ++.. +..+++|++|++.+|
T Consensus        97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n  175 (319)
T cd00116          97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANN  175 (319)
T ss_pred             HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCC
Confidence             444544444   999999998776     233456667 8899999999876532    2222 566778999999988


Q ss_pred             CCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCC-----ccc-cccCCcEEEEEeecccccCcccccceEEEEe
Q 016966          242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLP-----RGL-LLEKLERYSIYIRRYFSRKTGIWCRQFRVEL  315 (379)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l  315 (379)
                      .+.+..      ...+...+..+++|+.|++++|.+....     ..+ .+++|+.|+++.+....              
T Consensus       176 ~l~~~~------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~--------------  235 (319)
T cd00116         176 GIGDAG------IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD--------------  235 (319)
T ss_pred             CCchHH------HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch--------------
Confidence            876422      1123455666688999999988776322     112 46778888885443320              


Q ss_pred             CCcccchHHHHHH----hcccceeeccccccccccccccc-c--ccccCCCCcEEEecCCCCccC
Q 016966          316 NNKICLKDSLIVQ----LQRIEDLELSELQEQDVDYFRNE-L--VKVGSSHLKRLRLEGSDLALN  373 (379)
Q Consensus       316 ~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~l~~~~~~-~--~~~~~~~L~~L~l~~c~~l~~  373 (379)
                          .....+...    .+.|++|++.+|.   +++.... +  ....+++|+++++++|.....
T Consensus       236 ----~~~~~l~~~~~~~~~~L~~L~l~~n~---i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         236 ----AGAAALASALLSPNISLLTLSLSCND---ITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             ----HHHHHHHHHHhccCCCceEEEccCCC---CCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence                011112222    2699999999997   4421111 1  122468999999999987643

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.39  E-value=3.1e-12  Score=126.48  Aligned_cols=231  Identities=20%  Similarity=0.203  Sum_probs=165.9

Q ss_pred             ccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCCcE
Q 016966           89 FTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRT  165 (379)
Q Consensus        89 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~  165 (379)
                      -..|+++.+.+..+|... .++|+.|.+..|.+.        .+|.    .+++|++|++++|.   +|.   ..++|+.
T Consensus       203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt--------~LP~----lp~~Lk~LdLs~N~LtsLP~---lp~sL~~  266 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLT--------SLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLE  266 (788)
T ss_pred             CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCC--------CCCC----CCCCCcEEEecCCccCcccC---cccccce
Confidence            456888999888888743 257999999997654        3443    25789999999998   653   2468899


Q ss_pred             EEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCc
Q 016966          166 LSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFV  244 (379)
Q Consensus       166 L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  244 (379)
                      |++.+|.+.. |..   ..+|+.|++++|+++.+|.   .+++|+.|++++|.. ..+|..    ..+|+.|++.+|.+.
T Consensus       267 L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L-~~Lp~l----p~~L~~L~Ls~N~L~  335 (788)
T PRK15387        267 LSIFSNPLTHLPAL---PSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQL-ASLPAL----PSELCKLWAYNNQLT  335 (788)
T ss_pred             eeccCCchhhhhhc---hhhcCEEECcCCccccccc---cccccceeECCCCcc-ccCCCC----cccccccccccCccc
Confidence            9999999877 432   2578899999999999985   347899999999764 445542    236788889988887


Q ss_pred             ChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeecccccCccccc-ceEEEEe-CCcc-cc
Q 016966          245 DWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTGIWC-RQFRVEL-NNKI-CL  321 (379)
Q Consensus       245 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~l-~~~~-~~  321 (379)
                      ..+           .   ...+|+.|++++|+++.+|..  .++|+.|.++.+...  .+|..+ +...|++ .+.. .+
T Consensus       336 ~LP-----------~---lp~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~--~LP~l~~~L~~LdLs~N~Lt~L  397 (788)
T PRK15387        336 SLP-----------T---LPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLT--SLPALPSGLKELIVSGNRLTSL  397 (788)
T ss_pred             ccc-----------c---cccccceEecCCCccCCCCCC--Ccccceehhhccccc--cCcccccccceEEecCCcccCC
Confidence            532           1   114799999999999988864  467888877554433  334333 3347777 3333 34


Q ss_pred             hHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccCCCC
Q 016966          322 KDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNPAE  376 (379)
Q Consensus       322 ~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  376 (379)
                      |..    .++|+.|++++|.   ++.+|..     +.+|+.|++++|.+.++|..
T Consensus       398 P~l----~s~L~~LdLS~N~---LssIP~l-----~~~L~~L~Ls~NqLt~LP~s  440 (788)
T PRK15387        398 PVL----PSELKELMVSGNR---LTSLPML-----PSGLLSLSVYRNQLTRLPES  440 (788)
T ss_pred             CCc----ccCCCEEEccCCc---CCCCCcc-----hhhhhhhhhccCcccccChH
Confidence            431    3789999999997   7777741     45788999999998877653

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.32  E-value=1.3e-13  Score=133.27  Aligned_cols=250  Identities=20%  Similarity=0.229  Sum_probs=157.8

Q ss_pred             CccEEEEeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCC
Q 016966           88 HFTSIVLHGIKPNLLPEVL-ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNL  163 (379)
Q Consensus        88 ~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L  163 (379)
                      ++.+|++++|.+..+|.-. .+.+|+.|.++.|.        +..+|.. ..++++|++|.|.++.   +|.++..+++|
T Consensus        46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~--------i~~vp~s-~~~~~~l~~lnL~~n~l~~lP~~~~~lknl  116 (1081)
T KOG0618|consen   46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY--------IRSVPSS-CSNMRNLQYLNLKNNRLQSLPASISELKNL  116 (1081)
T ss_pred             eeEEeeccccccccCCchhhhHHHHhhcccchhh--------HhhCchh-hhhhhcchhheeccchhhcCchhHHhhhcc
Confidence            4788888888777777543 77788888888754        4455644 3678888888888887   88888888888


Q ss_pred             cEEEeecCCCCC-cccccCcCCCcEEEeeCC-cCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCC
Q 016966          164 RTLSLCSCGLPD-ISFVGYLKKLEILCLRGS-DIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE  241 (379)
Q Consensus       164 ~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  241 (379)
                      ++|+++.|.+.. |..+..++.+..+..++| .+..++.    .. ++++++..+.....++.. ++.+..  .|++..|
T Consensus       117 ~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~~-ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N  188 (1081)
T KOG0618|consen  117 QYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ----TS-IKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYN  188 (1081)
T ss_pred             cccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc----cc-chhhhhhhhhcccchhcc-hhhhhe--eeecccc
Confidence            888888888777 777777777777777777 2223332    11 555555554444444443 344443  4666666


Q ss_pred             CCcChhhhhhcccccchHhhcCC--------------------CCCcEEEeeccCCCCCCccccccCCcEEEEEeecccc
Q 016966          242 SFVDWEEEVEGVKNASLEELKHL--------------------PNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFS  301 (379)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~l--------------------~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  301 (379)
                      .+...             .+..+                    ++|+.|....|.+..+-......+|+.++++.+... 
T Consensus       189 ~~~~~-------------dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-  254 (1081)
T KOG0618|consen  189 EMEVL-------------DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-  254 (1081)
T ss_pred             hhhhh-------------hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-
Confidence            55411             12222                    344444444444442211113456777777555443 


Q ss_pred             cCccccc----ceEEEEe--CCcccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccCCC
Q 016966          302 RKTGIWC----RQFRVEL--NNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNPA  375 (379)
Q Consensus       302 ~~~~~~~----~~~~L~l--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  375 (379)
                       ..|.|.    +...+.+  +....+|..+... .+|+.|.+..|.   ++.+|...  +++.+|++|++..|.....|+
T Consensus       255 -~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~-~~L~~l~~~~ne---l~yip~~l--e~~~sL~tLdL~~N~L~~lp~  327 (1081)
T KOG0618|consen  255 -NLPEWIGACANLEALNANHNRLVALPLRISRI-TSLVSLSAAYNE---LEYIPPFL--EGLKSLRTLDLQSNNLPSLPD  327 (1081)
T ss_pred             -cchHHHHhcccceEecccchhHHhhHHHHhhh-hhHHHHHhhhhh---hhhCCCcc--cccceeeeeeehhccccccch
Confidence             333443    3335555  4445577777775 788888888887   77887754  358999999999998877665

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.31  E-value=2.5e-13  Score=119.76  Aligned_cols=228  Identities=19%  Similarity=0.239  Sum_probs=121.3

Q ss_pred             ccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcEEEeec-CCCCC-c-ccccCcC
Q 016966          111 LELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRTLSLCS-CGLPD-I-SFVGYLK  183 (379)
Q Consensus       111 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~L~l~~-~~l~~-~-~~~~~l~  183 (379)
                      ...+.+..|.        +..+|+..|+.+++||.|||++|.    -|+.+..+..|..|-+.+ |+|++ | ..++.|.
T Consensus        69 tveirLdqN~--------I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~  140 (498)
T KOG4237|consen   69 TVEIRLDQNQ--------ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS  140 (498)
T ss_pred             ceEEEeccCC--------cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence            4445555543        444566666666666666666666    555666666665555554 55666 4 4455666


Q ss_pred             CCcEEEeeCCcCcccc-hhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhh-----hh-------
Q 016966          184 KLEILCLRGSDIVKLP-VEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEE-----EV-------  250 (379)
Q Consensus       184 ~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-----~~-------  250 (379)
                      .|+.|.+.-|.+.-++ ..+..+++|..|.+.+| ..+.++...+..+.+++++.+..|.+.....     ..       
T Consensus       141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie  219 (498)
T KOG4237|consen  141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE  219 (498)
T ss_pred             HHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh
Confidence            6666666555555433 34556666666666553 2344444334555555555555444211000     00       


Q ss_pred             -hc---------------------------------------ccccchHhhcCCCCCcEEEeeccCCCCCCccc--cccC
Q 016966          251 -EG---------------------------------------VKNASLEELKHLPNLTSLEVHVRDVSSLPRGL--LLEK  288 (379)
Q Consensus       251 -~~---------------------------------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~  288 (379)
                       .|                                       ........++.+++|+++.+++|.++.+....  ....
T Consensus       220 tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~  299 (498)
T KOG4237|consen  220 TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAE  299 (498)
T ss_pred             cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhh
Confidence             00                                       00001122455566666666666666544432  3444


Q ss_pred             CcEEEEEeecccccCcccccceEEEEeCCcccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCC
Q 016966          289 LERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGS  368 (379)
Q Consensus       289 L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c  368 (379)
                      ++.|.+..+.                   ...+...+.+-+..|+.|+|++|+   ++.+.+..+. ...+|.+|.+-.|
T Consensus       300 l~eL~L~~N~-------------------l~~v~~~~f~~ls~L~tL~L~~N~---it~~~~~aF~-~~~~l~~l~l~~N  356 (498)
T KOG4237|consen  300 LQELYLTRNK-------------------LEFVSSGMFQGLSGLKTLSLYDNQ---ITTVAPGAFQ-TLFSLSTLNLLSN  356 (498)
T ss_pred             hhhhhcCcch-------------------HHHHHHHhhhccccceeeeecCCe---eEEEeccccc-ccceeeeeehccC
Confidence            5555442221                   222444443335888888898887   7777776652 4667788887766


Q ss_pred             CC
Q 016966          369 DL  370 (379)
Q Consensus       369 ~~  370 (379)
                      |.
T Consensus       357 p~  358 (498)
T KOG4237|consen  357 PF  358 (498)
T ss_pred             cc
Confidence            54

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.26  E-value=2.4e-13  Score=125.12  Aligned_cols=182  Identities=23%  Similarity=0.330  Sum_probs=142.3

Q ss_pred             EEEeCCCCCCCCCC---CCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCCcE
Q 016966           92 IVLHGIKPNLLPEV---LECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRT  165 (379)
Q Consensus        92 L~l~~~~~~~~~~~---~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~  165 (379)
                      |.+++.....+|..   ..+..-...+++.|.+        ..+|..+ ..|..|..+.+..|.   +|..+.++..|.|
T Consensus        55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~--------~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~  125 (722)
T KOG0532|consen   55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRF--------SELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTF  125 (722)
T ss_pred             cccccchhhcCCCccccccccchhhhhcccccc--------ccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHH
Confidence            44555544444431   2444445566666553        3455543 556677777777766   9999999999999


Q ss_pred             EEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCc
Q 016966          166 LSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFV  244 (379)
Q Consensus       166 L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  244 (379)
                      |+++.|.+.. |..++.|+ |+.|.+++|+++.+|..++.++.|.+|+.+.|. +..+|.. ++.+.+|+.|.+..|++.
T Consensus       126 l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~  202 (722)
T KOG0532|consen  126 LDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE  202 (722)
T ss_pred             hhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh
Confidence            9999999998 88888886 999999999999999999999999999999966 5777777 799999999999999887


Q ss_pred             ChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc-cccCCcEEEEEee
Q 016966          245 DWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL-LLEKLERYSIYIR  297 (379)
Q Consensus       245 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~  297 (379)
                      .           ++.+++.++ |..|+++||++..+|-.+ .+..|+.|-+..+
T Consensus       203 ~-----------lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenN  244 (722)
T KOG0532|consen  203 D-----------LPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENN  244 (722)
T ss_pred             h-----------CCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccC
Confidence            7           678888664 999999999999999877 6777777777433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.21  E-value=8.6e-12  Score=101.59  Aligned_cols=104  Identities=22%  Similarity=0.232  Sum_probs=23.0

Q ss_pred             CCceeEEEecCCC--CCcccc-CCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhh-cCCCCCCEEeccC
Q 016966          140 MIEVRVVNLTDMI--LPSSLG-LLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEV-GELTWLKLLDLRD  215 (379)
Q Consensus       140 l~~L~~L~l~~~~--lp~~i~-~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~L~~L~l~~  215 (379)
                      ...++.|+|+++.  ..+.++ .+.+|+.|++++|.++..+.+..+++|++|++++|.++.+...+ ..+++|++|++++
T Consensus        18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~   97 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN   97 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred             ccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence            3344555555554  112333 24455555555555544444444555555555555555444333 2345555555554


Q ss_pred             CCCCcccChhhhCCCCCCcEEEecCCCC
Q 016966          216 CCFLKVIPPNILSKLSHLEELYIGRESF  243 (379)
Q Consensus       216 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~  243 (379)
                      |.....-....+..+++|+.|++.+|++
T Consensus        98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   98 NKISDLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             S---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             CcCCChHHhHHHHcCCCcceeeccCCcc
Confidence            4321111111134444555555554444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.15  E-value=3e-11  Score=98.42  Aligned_cols=127  Identities=30%  Similarity=0.362  Sum_probs=46.2

Q ss_pred             ccCCCCCcEEEeecCCCCCccccc-CcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcE
Q 016966          157 LGLLSNLRTLSLCSCGLPDISFVG-YLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEE  235 (379)
Q Consensus       157 i~~l~~L~~L~l~~~~l~~~~~~~-~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  235 (379)
                      +.+..++++|++.++.|+.++.++ .+.+|+.|++++|.++.++ .+..+++|++|++++|.. ..+.......+++|++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I-~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRI-SSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCC-CccccchHHhCCcCCE
Confidence            344556778888888877766666 4677888888888877776 567778888888877554 3444332245778888


Q ss_pred             EEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc-----cccCCcEEEE
Q 016966          236 LYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL-----LLEKLERYSI  294 (379)
Q Consensus       236 L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~l  294 (379)
                      |++++|.+.++.         ....++.+++|+.|++.+|.+...+..-     .+|+|+.|+-
T Consensus        93 L~L~~N~I~~l~---------~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   93 LYLSNNKISDLN---------ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EE-TTS---SCC---------CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             EECcCCcCCChH---------HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            888888777654         4566777788888888877776444321     4677777754

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=8.5e-12  Score=111.61  Aligned_cols=40  Identities=25%  Similarity=0.263  Sum_probs=19.0

Q ss_pred             hcccceeeccccccccccccccccccccCCCCcEEEecCCCCc
Q 016966          329 LQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLA  371 (379)
Q Consensus       329 ~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l  371 (379)
                      |++|++|.+..|+   +++++.--....+++|+.|.+..++..
T Consensus       300 f~kL~~L~i~~N~---I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  300 FPKLEYLNISENN---IRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cccceeeecccCc---cccccccchhhccchhhhhhccccccc
Confidence            4556666666555   333333211223455555555554443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.13  E-value=8.2e-12  Score=110.36  Aligned_cols=66  Identities=17%  Similarity=0.125  Sum_probs=42.3

Q ss_pred             cCcCCCCCCccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecC
Q 016966           76 GCREWSDGSTIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTD  150 (379)
Q Consensus        76 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  150 (379)
                      ++.+.+. +.++....+.+..|.+..+|+  +..+++||.|+++.|.|+        .+.++.|.+++.|-.|-+.+
T Consensus        57 GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is--------~I~p~AF~GL~~l~~Lvlyg  124 (498)
T KOG4237|consen   57 GLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS--------FIAPDAFKGLASLLSLVLYG  124 (498)
T ss_pred             CcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccchh--------hcChHhhhhhHhhhHHHhhc
Confidence            5555554 556677788888888877776  347888888888886643        34444455555555544444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=1.3e-11  Score=110.40  Aligned_cols=201  Identities=20%  Similarity=0.173  Sum_probs=122.8

Q ss_pred             CccCCccEEEEeCCCCCCCCC---CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--CCc---
Q 016966           84 STIKHFTSIVLHGIKPNLLPE---VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--LPS---  155 (379)
Q Consensus        84 ~~~~~l~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--lp~---  155 (379)
                      ...+++|.+++.++.+...+.   ...|++++.|+++.|-+..     .. ....+...+++|+.|+++.|.  .|.   
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n-----w~-~v~~i~eqLp~Le~LNls~Nrl~~~~~s~  191 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN-----WF-PVLKIAEQLPSLENLNLSSNRLSNFISSN  191 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHh-----HH-HHHHHHHhcccchhcccccccccCCcccc
Confidence            345677777887777754442   3377888888888766543     12 223455677888888888877  221   


Q ss_pred             cccCCCCCcEEEeecCCCCC---cccccCcCCCcEEEeeCC-cCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCC
Q 016966          156 SLGLLSNLRTLSLCSCGLPD---ISFVGYLKKLEILCLRGS-DIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLS  231 (379)
Q Consensus       156 ~i~~l~~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~  231 (379)
                      .-..+.+|+.|.++.|.+++   ......+++|+.|.+..| .+..-......+..|++|++++|+....-.....+.++
T Consensus       192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~  271 (505)
T KOG3207|consen  192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP  271 (505)
T ss_pred             chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccccc
Confidence            12356778888888888776   244456677888888777 33222223445566778888776655443222357777


Q ss_pred             CCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc---cccCCcEEEE
Q 016966          232 HLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL---LLEKLERYSI  294 (379)
Q Consensus       232 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l  294 (379)
                      .|+.|.++.+++.+..    .-...........++|+.|.+..|++...++.-   .+++|..|.+
T Consensus       272 ~L~~Lnls~tgi~si~----~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~  333 (505)
T KOG3207|consen  272 GLNQLNLSSTGIASIA----EPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI  333 (505)
T ss_pred             chhhhhccccCcchhc----CCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence            7877777777776543    111112223455677788888777776555422   4566666665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.04  E-value=1.6e-10  Score=98.85  Aligned_cols=217  Identities=19%  Similarity=0.163  Sum_probs=122.6

Q ss_pred             CCCceeEEEecCCC------------CCccccCCCCCcEEEeecCCCCCccccc-CcCCCcEEEeeCCcCcccchhhcCC
Q 016966          139 SMIEVRVVNLTDMI------------LPSSLGLLSNLRTLSLCSCGLPDISFVG-YLKKLEILCLRGSDIVKLPVEVGEL  205 (379)
Q Consensus       139 ~l~~L~~L~l~~~~------------lp~~i~~l~~L~~L~l~~~~l~~~~~~~-~l~~L~~L~l~~~~l~~lp~~~~~l  205 (379)
                      .+..|.+|.++...            +|-.+.-+++|..+.++.|.-..+..+. .-+.|+++.+.++.+...|. +-.+
T Consensus       180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~-l~pe  258 (490)
T KOG1259|consen  180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPS-LLPE  258 (490)
T ss_pred             hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccccccccc-ccch
Confidence            34566666666654            4445555677777777777654432222 22567788777765543331 1112


Q ss_pred             CCCCEEeccC-CCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc
Q 016966          206 TWLKLLDLRD-CCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL  284 (379)
Q Consensus       206 ~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  284 (379)
                      ..+....-.. ....+..... +.....|+.+++++|.+...           -.+..-.|.++.|+++.|.+..+....
T Consensus       259 ~~~~D~~~~E~~t~~G~~~~~-~dTWq~LtelDLS~N~I~~i-----------DESvKL~Pkir~L~lS~N~i~~v~nLa  326 (490)
T KOG1259|consen  259 TILADPSGSEPSTSNGSALVS-ADTWQELTELDLSGNLITQI-----------DESVKLAPKLRRLILSQNRIRTVQNLA  326 (490)
T ss_pred             hhhcCccCCCCCccCCceEEe-cchHhhhhhccccccchhhh-----------hhhhhhccceeEEeccccceeeehhhh
Confidence            2222111111 0000111111 23344566666666666542           244445566666666666666555533


Q ss_pred             cccCCcEEEEEeecccccCccccc----ceEEEEe-CCcccchHHHHHHhcccceeeccccccccccccccccccccCCC
Q 016966          285 LLEKLERYSIYIRRYFSRKTGIWC----RQFRVEL-NNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSH  359 (379)
Q Consensus       285 ~~~~L~~L~l~~~~~~~~~~~~~~----~~~~L~l-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~  359 (379)
                      ++++|+.|+++.+...  ....|.    +-.+|.+ .+.+..-+++..+ -+|.+|++++|+   ++.+...-..+.+|+
T Consensus       327 ~L~~L~~LDLS~N~Ls--~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KL-YSLvnLDl~~N~---Ie~ldeV~~IG~LPC  400 (490)
T KOG1259|consen  327 ELPQLQLLDLSGNLLA--ECVGWHLKLGNIKTLKLAQNKIETLSGLRKL-YSLVNLDLSSNQ---IEELDEVNHIGNLPC  400 (490)
T ss_pred             hcccceEeecccchhH--hhhhhHhhhcCEeeeehhhhhHhhhhhhHhh-hhheeccccccc---hhhHHHhcccccccH
Confidence            5666666666433322  222222    2235555 5556666778886 899999999998   777776555667999


Q ss_pred             CcEEEecCCCCccCC
Q 016966          360 LKRLRLEGSDLALNP  374 (379)
Q Consensus       360 L~~L~l~~c~~l~~~  374 (379)
                      |+.|.+.+||...++
T Consensus       401 LE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  401 LETLRLTGNPLAGSV  415 (490)
T ss_pred             HHHHhhcCCCccccc
Confidence            999999999987654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.00  E-value=3e-10  Score=114.76  Aligned_cols=104  Identities=24%  Similarity=0.329  Sum_probs=85.1

Q ss_pred             CccCCccEEEEeCCC--CCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCcc
Q 016966           84 STIKHFTSIVLHGIK--PNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSS  156 (379)
Q Consensus        84 ~~~~~l~~L~l~~~~--~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~  156 (379)
                      ...+++++|-+..+.  +..++.  +..++.|+.|++++|   ..    ...+|..+ +.+-+||+|+++++.   +|.+
T Consensus       542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~---~~----l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~  613 (889)
T KOG4658|consen  542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGN---SS----LSKLPSSI-GELVHLRYLDLSDTGISHLPSG  613 (889)
T ss_pred             CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCC---Cc----cCcCChHH-hhhhhhhcccccCCCccccchH
Confidence            344579999999886  555555  558999999999984   33    77888876 889999999999999   9999


Q ss_pred             ccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcC
Q 016966          157 LGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDI  195 (379)
Q Consensus       157 i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l  195 (379)
                      +++|+.|.||++..+.-..  +.....+++|++|.+.....
T Consensus       614 l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~  654 (889)
T KOG4658|consen  614 LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL  654 (889)
T ss_pred             HHHHHhhheeccccccccccccchhhhcccccEEEeecccc
Confidence            9999999999999987444  45555699999999988753

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.98  E-value=1.5e-10  Score=99.02  Aligned_cols=130  Identities=20%  Similarity=0.262  Sum_probs=85.3

Q ss_pred             CceeEEEecCCC---CCccccCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCC
Q 016966          141 IEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCC  217 (379)
Q Consensus       141 ~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~  217 (379)
                      +.|..+||++|.   +.++..-.+.++.|+++.|.+.....+..+++|+.|++++|.++++.-.-.++-++++|.++.|.
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~  363 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK  363 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh
Confidence            456667777776   55556666777777777777766555677777777777777766665444466667777776633


Q ss_pred             CCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCc
Q 016966          218 FLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPR  282 (379)
Q Consensus       218 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  282 (379)
                       +..+..  ++.+-+|..|++.+|++....         ....++++|-|+.+.+.+|.+..++.
T Consensus       364 -iE~LSG--L~KLYSLvnLDl~~N~Ie~ld---------eV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  364 -IETLSG--LRKLYSLVNLDLSSNQIEELD---------EVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             -Hhhhhh--hHhhhhheeccccccchhhHH---------HhcccccccHHHHHhhcCCCccccch
Confidence             344333  566677777777777776544         45666777777777777777665554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.97  E-value=2.9e-11  Score=111.58  Aligned_cols=175  Identities=23%  Similarity=0.291  Sum_probs=132.5

Q ss_pred             cCCccEEEEeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCC
Q 016966           86 IKHFTSIVLHGIKPNLLPEVL-ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLS  161 (379)
Q Consensus        86 ~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~  161 (379)
                      +......+++.|.+..+|.-. .+..|..++++.|.        ...+|..+ .++..|.+|+|+.|.   +|..+..|+
T Consensus        74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~--------~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp  144 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC--------IRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP  144 (722)
T ss_pred             ccchhhhhccccccccCchHHHHHHHHHHHHHHhcc--------ceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc
Confidence            344556778888887777533 67777888887754        34455544 677888888888887   777776654


Q ss_pred             CCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecC
Q 016966          162 NLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGR  240 (379)
Q Consensus       162 ~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  240 (379)
                       |+.|-+++|+++. |..++.++.|..|+.+.|.+..+|..++.+.+|+.|.+..|. +..+|.+ +..|+ |..|+++.
T Consensus       145 -Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~Lp-Li~lDfSc  220 (722)
T KOG0532|consen  145 -LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSLP-LIRLDFSC  220 (722)
T ss_pred             -ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCCc-eeeeeccc
Confidence             7888888888888 888887788888888888888888888888888888888844 5667776 45443 78888888


Q ss_pred             CCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc
Q 016966          241 ESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL  284 (379)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  284 (379)
                      |++..           +|..+.+|..|+.|.+.+|.+.+-|..+
T Consensus       221 Nkis~-----------iPv~fr~m~~Lq~l~LenNPLqSPPAqI  253 (722)
T KOG0532|consen  221 NKISY-----------LPVDFRKMRHLQVLQLENNPLQSPPAQI  253 (722)
T ss_pred             Cceee-----------cchhhhhhhhheeeeeccCCCCCChHHH
Confidence            87776           5778888888888888888888777666

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.84  E-value=6.5e-10  Score=97.08  Aligned_cols=189  Identities=18%  Similarity=0.156  Sum_probs=88.8

Q ss_pred             cCCCCCcEEEeecCCCCC--c----ccccCcCCCcEEEeeCCcCcccc--------------hhhcCCCCCCEEeccCCC
Q 016966          158 GLLSNLRTLSLCSCGLPD--I----SFVGYLKKLEILCLRGSDIVKLP--------------VEVGELTWLKLLDLRDCC  217 (379)
Q Consensus       158 ~~l~~L~~L~l~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~~lp--------------~~~~~l~~L~~L~l~~~~  217 (379)
                      ...++|++|+|+.|-+..  +    .-+.++..|++|.+.+|++...-              .-++.-++|+++...+|.
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr  168 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR  168 (382)
T ss_pred             hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence            334466666666665433  2    23345566666666666554111              122334556666555533


Q ss_pred             CCcccCh----hhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCC-----ccc-ccc
Q 016966          218 FLKVIPP----NILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLP-----RGL-LLE  287 (379)
Q Consensus       218 ~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----~~~-~~~  287 (379)
                      . ...+.    ..+...+.|+.+.+..|.+....      .......+..+++|+.|+++.|-++.-.     ..+ .++
T Consensus       169 l-en~ga~~~A~~~~~~~~leevr~~qN~I~~eG------~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~  241 (382)
T KOG1909|consen  169 L-ENGGATALAEAFQSHPTLEEVRLSQNGIRPEG------VTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP  241 (382)
T ss_pred             c-ccccHHHHHHHHHhccccceEEEecccccCch------hHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc
Confidence            2 22111    11344456666666655554321      1223445555666666666655444111     111 234


Q ss_pred             CCcEEEEEeecccccCcccccceEEEEeCCcccchHHHHHHhcccceeeccccccccccccc-ccc--ccccCCCCcEEE
Q 016966          288 KLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFR-NEL--VKVGSSHLKRLR  364 (379)
Q Consensus       288 ~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~-~~~--~~~~~~~L~~L~  364 (379)
                      +|+.+++..+...              =.+...+.+.+.+.+|+|+.|.+.+|.   ++.-. ..+  .....|.|+.|+
T Consensus       242 ~L~El~l~dcll~--------------~~Ga~a~~~al~~~~p~L~vl~l~gNe---It~da~~~la~~~~ek~dL~kLn  304 (382)
T KOG1909|consen  242 HLRELNLGDCLLE--------------NEGAIAFVDALKESAPSLEVLELAGNE---ITRDAALALAACMAEKPDLEKLN  304 (382)
T ss_pred             hheeecccccccc--------------cccHHHHHHHHhccCCCCceeccCcch---hHHHHHHHHHHHHhcchhhHHhc
Confidence            4444444211111              012222334444446778888887776   22211 111  112367788888


Q ss_pred             ecCCCC
Q 016966          365 LEGSDL  370 (379)
Q Consensus       365 l~~c~~  370 (379)
                      +++|..
T Consensus       305 LngN~l  310 (382)
T KOG1909|consen  305 LNGNRL  310 (382)
T ss_pred             CCcccc
Confidence            877765

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.80  E-value=4.5e-09  Score=98.88  Aligned_cols=99  Identities=30%  Similarity=0.421  Sum_probs=47.5

Q ss_pred             CceeEEEecCCC---CCccccCCC-CCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccC
Q 016966          141 IEVRVVNLTDMI---LPSSLGLLS-NLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRD  215 (379)
Q Consensus       141 ~~L~~L~l~~~~---lp~~i~~l~-~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~  215 (379)
                      ..+..|++.++.   ++.....+. +|++|+++++.+.. +..+..+++|+.|++++|++.++|...+.++.|+.|++++
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~  195 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG  195 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC
Confidence            445555555554   444444442 55555555555544 3445555555555555555555554444455555555555


Q ss_pred             CCCCcccChhhhCCCCCCcEEEecCC
Q 016966          216 CCFLKVIPPNILSKLSHLEELYIGRE  241 (379)
Q Consensus       216 ~~~~~~~~~~~l~~l~~L~~L~l~~~  241 (379)
                      |. ...+|.. ++....|+.|.+.+|
T Consensus       196 N~-i~~l~~~-~~~~~~L~~l~~~~N  219 (394)
T COG4886         196 NK-ISDLPPE-IELLSALEELDLSNN  219 (394)
T ss_pred             Cc-cccCchh-hhhhhhhhhhhhcCC
Confidence            22 3444432 233333555555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.78  E-value=5.6e-09  Score=98.24  Aligned_cols=182  Identities=27%  Similarity=0.370  Sum_probs=100.4

Q ss_pred             EEEeCCCC-CCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCC-ceeEEEecCCC---CCccccCCCCCcEE
Q 016966           92 IVLHGIKP-NLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMI-EVRVVNLTDMI---LPSSLGLLSNLRTL  166 (379)
Q Consensus        92 L~l~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~---lp~~i~~l~~L~~L  166 (379)
                      +....+.+ .........+.++.|.+.+|.+        ..+++.. ..+. +|+.|+++++.   +|..+..+++|+.|
T Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i--------~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L  168 (394)
T COG4886          98 LDLNLNRLRSNISELLELTNLTSLDLDNNNI--------TDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNL  168 (394)
T ss_pred             eeccccccccCchhhhcccceeEEecCCccc--------ccCcccc-ccchhhcccccccccchhhhhhhhhcccccccc
Confidence            34444433 2233333445566666666443        2333322 2232 66666666666   44456666667777


Q ss_pred             EeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcC
Q 016966          167 SLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVD  245 (379)
Q Consensus       167 ~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  245 (379)
                      +++.|.+.+ +...+.+++|+.|+++++.+..+|..+..+..|+++.+++|....... . ++.++++..+.+..+.+..
T Consensus       169 ~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~-~-~~~~~~l~~l~l~~n~~~~  246 (394)
T COG4886         169 DLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLS-S-LSNLKNLSGLELSNNKLED  246 (394)
T ss_pred             ccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecch-h-hhhcccccccccCCceeee
Confidence            777766666 444446666666777776666666655555556666666643222222 2 4556666666555554433


Q ss_pred             hhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEE
Q 016966          246 WEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIY  295 (379)
Q Consensus       246 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~  295 (379)
                                 .+..++.++.++.|++.+|.++.++......+|+.++++
T Consensus       247 -----------~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s  285 (394)
T COG4886         247 -----------LPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLS  285 (394)
T ss_pred             -----------ccchhccccccceeccccccccccccccccCccCEEecc
Confidence                       234555556666666666666655553245566666553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.66  E-value=6.2e-09  Score=91.06  Aligned_cols=181  Identities=17%  Similarity=0.169  Sum_probs=99.0

Q ss_pred             CCccEEEEeCCCC--CCCCC----CCCCCCccEEEeecCCCCCCCCCCCccc-Ch--------hhhhCCCceeEEEecCC
Q 016966           87 KHFTSIVLHGIKP--NLLPE----VLECPQLELLFIRGGGRDDPWETSPVTI-PD--------NFFKSMIEVRVVNLTDM  151 (379)
Q Consensus        87 ~~l~~L~l~~~~~--~~~~~----~~~~~~L~~L~l~~n~~~~~~~~~~~~~-~~--------~~~~~l~~L~~L~l~~~  151 (379)
                      ++++.+++++|.+  +.++.    +.++..|+.|.+.+|.+...    .... ..        .-..+-+.||+++.+.|
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~----ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPE----AGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChh----HHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            4677777777766  23332    12566677777777655332    1111 00        01123456777777776


Q ss_pred             C--------CCccccCCCCCcEEEeecCCCCC------cccccCcCCCcEEEeeCCcCc-----ccchhhcCCCCCCEEe
Q 016966          152 I--------LPSSLGLLSNLRTLSLCSCGLPD------ISFVGYLKKLEILCLRGSDIV-----KLPVEVGELTWLKLLD  212 (379)
Q Consensus       152 ~--------lp~~i~~l~~L~~L~l~~~~l~~------~~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~  212 (379)
                      .        +...+...+.|+.+.++.|.|..      ...+..+++|++||++.|.++     .+...+..++.|+.|+
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~  247 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN  247 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence            6        22334555667777777776544      144556677777777777554     3344455666677777


Q ss_pred             ccCCCCCcccChh----hhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCC
Q 016966          213 LRDCCFLKVIPPN----ILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDV  277 (379)
Q Consensus       213 l~~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  277 (379)
                      +++|.....-...    .-...|+|+.|.+.+|.++...      ...+...+...+.|++|.+++|.+
T Consensus       248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da------~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDA------ALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHH------HHHHHHHHhcchhhHHhcCCcccc
Confidence            7776543332211    1233567777777777665432      112233344466677777776665

>PLN03150 hypothetical protein; Provisional

Probab=98.61  E-value=1.4e-07  Score=93.50  Aligned_cols=106  Identities=25%  Similarity=0.292  Sum_probs=75.3

Q ss_pred             CCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCc-ccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEe
Q 016966          162 NLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIV-KLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYI  238 (379)
Q Consensus       162 ~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  238 (379)
                      .++.|+|+++.+..  |..++++++|+.|++++|.+. .+|..++.+++|+.|++++|...+.+|.. ++++++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence            36677777777765  677777888888888888776 67777778888888888887777777766 677888888888


Q ss_pred             cCCCCcChhhhhhcccccchHhhcCC-CCCcEEEeeccCCC
Q 016966          239 GRESFVDWEEEVEGVKNASLEELKHL-PNLTSLEVHVRDVS  278 (379)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~  278 (379)
                      ++|.+.+.          ++..++.+ .++..+++.+|...
T Consensus       498 s~N~l~g~----------iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        498 NGNSLSGR----------VPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             cCCccccc----------CChHHhhccccCceEEecCCccc
Confidence            87776643          35555443 35667777766543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=1.2e-08  Score=87.58  Aligned_cols=37  Identities=22%  Similarity=0.239  Sum_probs=27.2

Q ss_pred             hcccceeeccccccccccccccccc-cccCCCCcEEEecCCC
Q 016966          329 LQRIEDLELSELQEQDVDYFRNELV-KVGSSHLKRLRLEGSD  369 (379)
Q Consensus       329 ~~~L~~L~l~~~~~~~l~~~~~~~~-~~~~~~L~~L~l~~c~  369 (379)
                      |+.|++|.+++|.  .  .+|..+. ....|+|.+|++.+|-
T Consensus       337 f~~L~~lSlsRCY--~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  337 FNYLQHLSLSRCY--D--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             cchheeeehhhhc--C--CChHHeeeeccCcceEEEEecccc
Confidence            6899999999998  2  2333332 3458999999998874

>PLN03150 hypothetical protein; Provisional

Probab=98.48  E-value=4.9e-07  Score=89.56  Aligned_cols=103  Identities=23%  Similarity=0.325  Sum_probs=76.9

Q ss_pred             CCcEEEeeCCcCc-ccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhc
Q 016966          184 KLEILCLRGSDIV-KLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELK  262 (379)
Q Consensus       184 ~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~  262 (379)
                      .++.|+++++.+. .+|..+..+++|+.|++++|...+.+|.. ++.+++|+.|++++|.+.+.          .+..++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~----------iP~~l~  487 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGS----------IPESLG  487 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCCC----------CchHHh
Confidence            3677888888776 67778888888888888888777777776 68888888888888877654          467788


Q ss_pred             CCCCCcEEEeeccCCC-CCCccc--cccCCcEEEEEee
Q 016966          263 HLPNLTSLEVHVRDVS-SLPRGL--LLEKLERYSIYIR  297 (379)
Q Consensus       263 ~l~~L~~L~l~~~~~~-~~~~~~--~~~~L~~L~l~~~  297 (379)
                      .+++|+.|++++|.+. .+|..+  ...++..+++..+
T Consensus       488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             cCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence            8888888888888877 677665  2345556665433

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=3e-09  Score=91.10  Aligned_cols=172  Identities=26%  Similarity=0.247  Sum_probs=110.1

Q ss_pred             CCccEEEEeCCCC--CCCCCC-CCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-CC-----ccc
Q 016966           87 KHFTSIVLHGIKP--NLLPEV-LECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-LP-----SSL  157 (379)
Q Consensus        87 ~~l~~L~l~~~~~--~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-lp-----~~i  157 (379)
                      .++++|+++...+  .++..+ ..|.+|+.|.+.++.+.|.       +... +.+-.+|+.|+++.|+ +.     --+
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~-------I~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~  256 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP-------IVNT-IAKNSNLVRLNLSMCSGFTENALQLLL  256 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH-------HHHH-HhccccceeeccccccccchhHHHHHH
Confidence            3577888887766  223332 3778888888888766443       3223 3456788888888887 22     125


Q ss_pred             cCCCCCcEEEeecCCCCC--ccc-ccCc-CCCcEEEeeCCc----CcccchhhcCCCCCCEEeccCCCCCcccChhhhCC
Q 016966          158 GLLSNLRTLSLCSCGLPD--ISF-VGYL-KKLEILCLRGSD----IVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSK  229 (379)
Q Consensus       158 ~~l~~L~~L~l~~~~l~~--~~~-~~~l-~~L~~L~l~~~~----l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~  229 (379)
                      .+++.|..|++++|.+..  ... +.+. .+|..|++++|.    .+.+..-..++|+|.+|++++|..+..--...+.+
T Consensus       257 ~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k  336 (419)
T KOG2120|consen  257 SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK  336 (419)
T ss_pred             HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence            667788888888887544  211 1221 467888888872    22444445678888888888876555433333677


Q ss_pred             CCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeecc
Q 016966          230 LSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVR  275 (379)
Q Consensus       230 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  275 (379)
                      ++.|++|.++.|......         ..-.+...|.|.+|++.++
T Consensus       337 f~~L~~lSlsRCY~i~p~---------~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  337 FNYLQHLSLSRCYDIIPE---------TLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             cchheeeehhhhcCCChH---------HeeeeccCcceEEEEeccc
Confidence            888888888877654322         3455677788888887654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.37  E-value=4.5e-07  Score=60.63  Aligned_cols=58  Identities=29%  Similarity=0.479  Sum_probs=29.5

Q ss_pred             CCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCC
Q 016966          184 KLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRES  242 (379)
Q Consensus       184 ~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  242 (379)
                      +|++|++++|+++.+|. .+..+++|++|++++|.. ..++...+..+++|+.|++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l-~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL-TSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSE-SEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc-CccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555555553 344555555555555332 33333335555555555555543

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.37  E-value=3.5e-07  Score=61.18  Aligned_cols=57  Identities=28%  Similarity=0.400  Sum_probs=43.6

Q ss_pred             CCCcEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCC
Q 016966          161 SNLRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCC  217 (379)
Q Consensus       161 ~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~  217 (379)
                      ++|++|++++|.++. + ..+..+++|++|++++|.+..+++ .+..+++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            467788888887777 3 567778888888888888887775 56788888888887764

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.36  E-value=2.9e-09  Score=101.31  Aligned_cols=174  Identities=20%  Similarity=0.214  Sum_probs=109.5

Q ss_pred             CCCccCCccEEEEeCCCCCCCCCCCC-CCCccEEEeecCCCCCCCCCCCcccChhhhh----------CCCceeEEEecC
Q 016966           82 DGSTIKHFTSIVLHGIKPNLLPEVLE-CPQLELLFIRGGGRDDPWETSPVTIPDNFFK----------SMIEVRVVNLTD  150 (379)
Q Consensus        82 ~~~~~~~l~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~----------~l~~L~~L~l~~  150 (379)
                      .+..++.+|+|.+.+|++.....+.. -..|+.|+-.+          ...-...+|.          ..-.|.+.+.++
T Consensus       104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~----------Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsy  173 (1096)
T KOG1859|consen  104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHN----------SLDALRHVFASCGGDISNSPVWNKLATASFSY  173 (1096)
T ss_pred             eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhc----------cHHHHHHHHHHhccccccchhhhhHhhhhcch
Confidence            34567888999998888744333221 12233333322          0000011111          123466677777


Q ss_pred             CC---CCccccCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCCCCCcccChhh
Q 016966          151 MI---LPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCCFLKVIPPNI  226 (379)
Q Consensus       151 ~~---lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~  226 (379)
                      |.   +-.++.-++.|+.|+|+.|++.....+..|++|++||+++|.+..+|.- ...+ +|+.|.+++|.. ..+-.  
T Consensus       174 N~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l-~tL~g--  249 (1096)
T KOG1859|consen  174 NRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNAL-TTLRG--  249 (1096)
T ss_pred             hhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccHH-Hhhhh--
Confidence            77   5556777788888888888887766777888888888888888877742 2233 388888877553 33332  


Q ss_pred             hCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC
Q 016966          227 LSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS  278 (379)
Q Consensus       227 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  278 (379)
                      +.++.+|+.|+++.|-+.+..         -+..+..+..|+.|.+.+|.+-
T Consensus       250 ie~LksL~~LDlsyNll~~hs---------eL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  250 IENLKSLYGLDLSYNLLSEHS---------ELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             HHhhhhhhccchhHhhhhcch---------hhhHHHHHHHHHHHhhcCCccc
Confidence            677888888888888776544         3555566667778888777654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.21  E-value=1.7e-07  Score=88.54  Aligned_cols=104  Identities=29%  Similarity=0.335  Sum_probs=47.0

Q ss_pred             CCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccC
Q 016966          139 SMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRD  215 (379)
Q Consensus       139 ~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~  215 (379)
                      .+++|..|++.++.   +...+..+.+|++|++++|.|+....+..++.|+.|++.+|.++.++ .+..++.|+.+++++
T Consensus        93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~  171 (414)
T KOG0531|consen   93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSY  171 (414)
T ss_pred             cccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCCc
Confidence            34445555555544   11114445555555555555555444444444555555555554444 233345555555555


Q ss_pred             CCCCcccChhhhCCCCCCcEEEecCCCCc
Q 016966          216 CCFLKVIPPNILSKLSHLEELYIGRESFV  244 (379)
Q Consensus       216 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  244 (379)
                      |.....-+.. +..+.+++.+.+.+|.+.
T Consensus       172 n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  172 NRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             chhhhhhhhh-hhhccchHHHhccCCchh
Confidence            3322211101 134445555555544443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=6e-07  Score=77.28  Aligned_cols=176  Identities=20%  Similarity=0.219  Sum_probs=111.1

Q ss_pred             CccEEEEeCCCCCCCCCC---C-CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCCCCcccc----C
Q 016966           88 HFTSIVLHGIKPNLLPEV---L-ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMILPSSLG----L  159 (379)
Q Consensus        88 ~l~~L~l~~~~~~~~~~~---~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~lp~~i~----~  159 (379)
                      .+.-+.+.++.+.....+   . .+..++.+++.+|.+++     +..+ ..++.+|+.|++|++++|++...|+    .
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSd-----WseI-~~ile~lP~l~~LNls~N~L~s~I~~lp~p  119 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISD-----WSEI-GAILEQLPALTTLNLSCNSLSSDIKSLPLP  119 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhcc-----HHHH-HHHHhcCccceEeeccCCcCCCccccCccc
Confidence            344556666766544432   2 67788889999988766     3333 3466888999999999988222233    4


Q ss_pred             CCCCcEEEeecCCCCC---cccccCcCCCcEEEeeCCcCcccc---hhh---------------------------cCCC
Q 016966          160 LSNLRTLSLCSCGLPD---ISFVGYLKKLEILCLRGSDIVKLP---VEV---------------------------GELT  206 (379)
Q Consensus       160 l~~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp---~~~---------------------------~~l~  206 (379)
                      +.+|+.|-+.++.+..   -..+..++.++.|+++.|.+..+-   ..+                           ..+|
T Consensus       120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp  199 (418)
T KOG2982|consen  120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP  199 (418)
T ss_pred             ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence            5688888888888776   355667788888888777443111   011                           1123


Q ss_pred             CCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC
Q 016966          207 WLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS  278 (379)
Q Consensus       207 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  278 (379)
                      ++..+.+..|..-..-.......++.+-.|.++.+++.+|.         ..+++..++.|+.|.+..+.+.
T Consensus       200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswa---------svD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWA---------SVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHH---------HHHHHcCCchhheeeccCCccc
Confidence            33333333332211111111344566667788888888876         6788999999999999887765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.15  E-value=9.2e-07  Score=75.21  Aligned_cols=187  Identities=16%  Similarity=0.130  Sum_probs=111.4

Q ss_pred             ccccCcCCCcEEEeeCCcCc-ccch----hhcCCCCCCEEeccCCCCCcccChhh-------------hCCCCCCcEEEe
Q 016966          177 SFVGYLKKLEILCLRGSDIV-KLPV----EVGELTWLKLLDLRDCCFLKVIPPNI-------------LSKLSHLEELYI  238 (379)
Q Consensus       177 ~~~~~l~~L~~L~l~~~~l~-~lp~----~~~~l~~L~~L~l~~~~~~~~~~~~~-------------l~~l~~L~~L~l  238 (379)
                      +.+-+|++|++.+++.|.+. +.|+    .+..-+.|.||.+++|. .+.+...-             ..+-|.|++..+
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vic  164 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC  164 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence            45556777777777777554 3333    35566777777777753 23222211             245678899988


Q ss_pred             cCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCC--CCccc-----cccCCcEEEEEeeccc-------ccCc
Q 016966          239 GRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSS--LPRGL-----LLEKLERYSIYIRRYF-------SRKT  304 (379)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~-----~~~~L~~L~l~~~~~~-------~~~~  304 (379)
                      ..|++...+      ......-+....+|+.+.+..|.+..  +...+     .+.+|+.|++..+.+.       ....
T Consensus       165 grNRlengs------~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al  238 (388)
T COG5238         165 GRNRLENGS------KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL  238 (388)
T ss_pred             ccchhccCc------HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh
Confidence            888876532      11122334444688999998888762  22211     4688999988655433       3446


Q ss_pred             ccccceEEEEeCCcccchHH---HHHH-----hcccceeeccccccccccccc-----cccccccCCCCcEEEecCCCCc
Q 016966          305 GIWCRQFRVELNNKICLKDS---LIVQ-----LQRIEDLELSELQEQDVDYFR-----NELVKVGSSHLKRLRLEGSDLA  371 (379)
Q Consensus       305 ~~~~~~~~L~l~~~~~~~~~---~~~~-----~~~L~~L~l~~~~~~~l~~~~-----~~~~~~~~~~L~~L~l~~c~~l  371 (379)
                      +.|+..+.|.++.|.....+   +...     +|+|..|-..+|.  .-..+.     .++..+++|-|..|.+.+|.+-
T Consensus       239 ~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne--~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         239 CEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE--RRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             cccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhh--hcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence            77888778888444432222   2211     4778888888776  222211     1223456888888888877654


Q ss_pred             c
Q 016966          372 L  372 (379)
Q Consensus       372 ~  372 (379)
                      +
T Consensus       317 E  317 (388)
T COG5238         317 E  317 (388)
T ss_pred             h
Confidence            3

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.15  E-value=1.2e-06  Score=86.86  Aligned_cols=131  Identities=18%  Similarity=0.189  Sum_probs=71.3

Q ss_pred             CCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-----CCccccCCCCCcEEEeecCCCCCcccccCcC
Q 016966          109 PQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-----LPSSLGLLSNLRTLSLCSCGLPDISFVGYLK  183 (379)
Q Consensus       109 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-----lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~  183 (379)
                      .+|+.|+++|...  .    ...-+..+...+|.|+.|.+.+-.     +..-..++++|++||++++.++....+++|+
T Consensus       122 ~nL~~LdI~G~~~--~----s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~Lk  195 (699)
T KOG3665|consen  122 QNLQHLDISGSEL--F----SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLK  195 (699)
T ss_pred             HhhhhcCccccch--h----hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccc
Confidence            4566666665211  1    222333344456666666666654     1122345667777777777776666777777


Q ss_pred             CCcEEEeeCCcCcccc--hhhcCCCCCCEEeccCCCCCccc--Chh---hhCCCCCCcEEEecCCCCcC
Q 016966          184 KLEILCLRGSDIVKLP--VEVGELTWLKLLDLRDCCFLKVI--PPN---ILSKLSHLEELYIGRESFVD  245 (379)
Q Consensus       184 ~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~~--~~~---~l~~l~~L~~L~l~~~~~~~  245 (379)
                      +|++|.+.+-.+..-.  ..+.+|++|++||+|........  ...   --..+|+|+.|+.+++.+..
T Consensus       196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            7777777665554322  25566777777777664322221  100   01336677777766655543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=1.9e-06  Score=74.30  Aligned_cols=79  Identities=27%  Similarity=0.376  Sum_probs=51.7

Q ss_pred             hCCCceeEEEecCCC------CCccccCCCCCcEEEeecCCCCC-cccc-cCcCCCcEEEeeCCcCc--ccchhhcCCCC
Q 016966          138 KSMIEVRVVNLTDMI------LPSSLGLLSNLRTLSLCSCGLPD-ISFV-GYLKKLEILCLRGSDIV--KLPVEVGELTW  207 (379)
Q Consensus       138 ~~l~~L~~L~l~~~~------lp~~i~~l~~L~~L~l~~~~l~~-~~~~-~~l~~L~~L~l~~~~l~--~lp~~~~~l~~  207 (379)
                      .....++.+||.+|.      +-.-+.+|++|++|+++.|.+.. +..+ ..+.+|++|.+.++.+.  .....+..+|+
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            456677777777776      22234567777777777777665 4433 35567777777777554  45555667777


Q ss_pred             CCEEeccCC
Q 016966          208 LKLLDLRDC  216 (379)
Q Consensus       208 L~~L~l~~~  216 (379)
                      ++.|+++.|
T Consensus       148 vtelHmS~N  156 (418)
T KOG2982|consen  148 VTELHMSDN  156 (418)
T ss_pred             hhhhhhccc
Confidence            777777765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.09  E-value=8.3e-07  Score=87.97  Aligned_cols=147  Identities=20%  Similarity=0.171  Sum_probs=105.1

Q ss_pred             cCCccEEEEeCCCC--CCCC-CC-CCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--CCccccC
Q 016966           86 IKHFTSIVLHGIKP--NLLP-EV-LECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--LPSSLGL  159 (379)
Q Consensus        86 ~~~l~~L~l~~~~~--~~~~-~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--lp~~i~~  159 (379)
                      ..++++|+|++...  ..-+ .. .-+|.|++|.+.+-.+.       ..--...+.++++|+.||++++.  -..++++
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~-------~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~  193 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD-------NDDFSQLCASFPNLRSLDISGTNISNLSGISR  193 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec-------chhHHHHhhccCccceeecCCCCccCcHHHhc
Confidence            45788999987544  1111 22 27899999999993332       11123456789999999999999  3368999


Q ss_pred             CCCCcEEEeecCCCCC---cccccCcCCCcEEEeeCCcCcccc-------hhhcCCCCCCEEeccCCCCCcccChhhhCC
Q 016966          160 LSNLRTLSLCSCGLPD---ISFVGYLKKLEILCLRGSDIVKLP-------VEVGELTWLKLLDLRDCCFLKVIPPNILSK  229 (379)
Q Consensus       160 l~~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp-------~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~  229 (379)
                      |++|+.|.+.+-.+..   ...+..|++|++||++.......+       +.-..+|+||.||.++......+-...+..
T Consensus       194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~s  273 (699)
T KOG3665|consen  194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNS  273 (699)
T ss_pred             cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHh
Confidence            9999999999988776   578889999999999997444222       123459999999999976666655554555


Q ss_pred             CCCCcEEEec
Q 016966          230 LSHLEELYIG  239 (379)
Q Consensus       230 l~~L~~L~l~  239 (379)
                      -++|+...+.
T Consensus       274 H~~L~~i~~~  283 (699)
T KOG3665|consen  274 HPNLQQIAAL  283 (699)
T ss_pred             CccHhhhhhh
Confidence            5666555433

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.07  E-value=5.5e-07  Score=85.13  Aligned_cols=170  Identities=25%  Similarity=0.279  Sum_probs=84.5

Q ss_pred             CccCCccEEEEeCCCCCCCCC-CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--CCccccCC
Q 016966           84 STIKHFTSIVLHGIKPNLLPE-VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--LPSSLGLL  160 (379)
Q Consensus        84 ~~~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--lp~~i~~l  160 (379)
                      ..++++..+++.+|.+..+.. ...+++|+.|++++|.+.+        +..  +..++.|+.|++.+|.  -...+..+
T Consensus        92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~--------i~~--l~~l~~L~~L~l~~N~i~~~~~~~~l  161 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK--------LEG--LSTLTLLKELNLSGNLISDISGLESL  161 (414)
T ss_pred             ccccceeeeeccccchhhcccchhhhhcchheecccccccc--------ccc--hhhccchhhheeccCcchhccCCccc
Confidence            345566666666666655555 4456666666666655433        111  2344456666666665  22334445


Q ss_pred             CCCcEEEeecCCCCCccc--ccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCC--CcEE
Q 016966          161 SNLRTLSLCSCGLPDISF--VGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSH--LEEL  236 (379)
Q Consensus       161 ~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~--L~~L  236 (379)
                      ..|+.+++++|.+...+.  +..+.+++.+.+.++.+..+. .+..+..+..+.+..+.....-+   +..++.  |+.+
T Consensus       162 ~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~~---l~~~~~~~L~~l  237 (414)
T KOG0531|consen  162 KSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLEG---LNELVMLHLREL  237 (414)
T ss_pred             hhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceeccC---cccchhHHHHHH
Confidence            666666666666555322  455566666666666554333 22222233333333322221111   122222  5666


Q ss_pred             EecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC
Q 016966          237 YIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS  278 (379)
Q Consensus       237 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  278 (379)
                      ++.++++...           +..+..+..+..|++..+.+.
T Consensus       238 ~l~~n~i~~~-----------~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  238 YLSGNRISRS-----------PEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             hcccCccccc-----------cccccccccccccchhhcccc
Confidence            6666665541           134444555555555555443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.07  E-value=5.8e-06  Score=50.84  Aligned_cols=38  Identities=29%  Similarity=0.366  Sum_probs=17.6

Q ss_pred             CCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccc
Q 016966          162 NLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLP  199 (379)
Q Consensus       162 ~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp  199 (379)
                      +|++|++++|.++. ++.+++|++|++|++++|+++.++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            44555555555555 333555555555555555444443

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.97  E-value=1.8e-05  Score=64.57  Aligned_cols=84  Identities=23%  Similarity=0.295  Sum_probs=36.1

Q ss_pred             CCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcC
Q 016966          184 KLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKH  263 (379)
Q Consensus       184 ~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~  263 (379)
                      +...+++++|.+..++ .+..++.|.+|.+++|..+..-|.- -.-+++|..|.+.+|++....         -+.-+..
T Consensus        43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L-~~~~p~l~~L~LtnNsi~~l~---------dl~pLa~  111 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDL-DTFLPNLKTLILTNNSIQELG---------DLDPLAS  111 (233)
T ss_pred             ccceecccccchhhcc-cCCCccccceEEecCCcceeeccch-hhhccccceEEecCcchhhhh---------hcchhcc
Confidence            3444444444444333 3344444444444443333322221 122344555555555444433         2333444


Q ss_pred             CCCCcEEEeeccCCC
Q 016966          264 LPNLTSLEVHVRDVS  278 (379)
Q Consensus       264 l~~L~~L~l~~~~~~  278 (379)
                      ||+|++|.+-+|.++
T Consensus       112 ~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen  112 CPKLEYLTLLGNPVE  126 (233)
T ss_pred             CCccceeeecCCchh
Confidence            455555555555444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.92  E-value=6e-05  Score=69.41  Aligned_cols=72  Identities=15%  Similarity=0.258  Sum_probs=39.4

Q ss_pred             cCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCC-cCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEE
Q 016966          158 GLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGS-DIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEEL  236 (379)
Q Consensus       158 ~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L  236 (379)
                      ..+.++++|++++|.++..+.  -..+|++|.+++| .++.+|..+  .++|++|.+++|..+..+|.       +|+.|
T Consensus        49 ~~~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~-------sLe~L  117 (426)
T PRK15386         49 EEARASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE-------SVRSL  117 (426)
T ss_pred             HHhcCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-------ccceE
Confidence            345666777777776655221  1235777777665 555555433  24567777766644444442       35555


Q ss_pred             EecC
Q 016966          237 YIGR  240 (379)
Q Consensus       237 ~l~~  240 (379)
                      .+..
T Consensus       118 ~L~~  121 (426)
T PRK15386        118 EIKG  121 (426)
T ss_pred             EeCC
Confidence            5543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.89  E-value=4.9e-07  Score=86.57  Aligned_cols=98  Identities=21%  Similarity=0.203  Sum_probs=56.5

Q ss_pred             CCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcC
Q 016966          184 KLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKH  263 (379)
Q Consensus       184 ~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~  263 (379)
                      .|.+.+.++|.+..+-.++.-++.|++|++++|+....-  . +..++.|.+|++++|.++..+         -+...+ 
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~-Lr~l~~LkhLDlsyN~L~~vp---------~l~~~g-  231 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--N-LRRLPKLKHLDLSYNCLRHVP---------QLSMVG-  231 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--H-HHhcccccccccccchhcccc---------ccchhh-
Confidence            455666666666655556666666777777765543332  2 566667777777766665432         111111 


Q ss_pred             CCCCcEEEeeccCCCCCCccccccCCcEEEEE
Q 016966          264 LPNLTSLEVHVRDVSSLPRGLLLEKLERYSIY  295 (379)
Q Consensus       264 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~  295 (379)
                      + +|..|.+++|.++.+.....+.+|+.|+++
T Consensus       232 c-~L~~L~lrnN~l~tL~gie~LksL~~LDls  262 (1096)
T KOG1859|consen  232 C-KLQLLNLRNNALTTLRGIENLKSLYGLDLS  262 (1096)
T ss_pred             h-hheeeeecccHHHhhhhHHhhhhhhccchh
Confidence            1 366666666666665554456666666663

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.84  E-value=2.8e-05  Score=47.80  Aligned_cols=36  Identities=36%  Similarity=0.458  Sum_probs=27.0

Q ss_pred             CCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCC
Q 016966          183 KKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCF  218 (379)
Q Consensus       183 ~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~  218 (379)
                      ++|++|++++|+++.+|..+++|++|++|++++|..
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence            468888888888888887788888888888888653

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.71  E-value=0.00022  Score=65.72  Aligned_cols=128  Identities=22%  Similarity=0.283  Sum_probs=80.1

Q ss_pred             hCCCceeEEEecCCC---CCccccCCCCCcEEEeecCC-CCC-cccccCcCCCcEEEeeCC-cCcccchhhcCCCCCCEE
Q 016966          138 KSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCG-LPD-ISFVGYLKKLEILCLRGS-DIVKLPVEVGELTWLKLL  211 (379)
Q Consensus       138 ~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~-l~~-~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L  211 (379)
                      ..+++++.|++++|.   +|.   --.+|+.|.+++|. ++. |..+  ..+|++|++++| .+..+|.      .|++|
T Consensus        49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L  117 (426)
T PRK15386         49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSL  117 (426)
T ss_pred             HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceE
Confidence            347899999999997   662   22369999999876 555 5444  358999999999 7878885      46667


Q ss_pred             eccCCC--CCcccChhhhCCCCCCcEEEecCCCCc-ChhhhhhcccccchHhhcCC-CCCcEEEeeccCCCCCCcccccc
Q 016966          212 DLRDCC--FLKVIPPNILSKLSHLEELYIGRESFV-DWEEEVEGVKNASLEELKHL-PNLTSLEVHVRDVSSLPRGLLLE  287 (379)
Q Consensus       212 ~l~~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~  287 (379)
                      ++..+.  .+..+|.       +|+.|.+..+... ...         .+.   .+ ++|+.|.+.+|....+|.. ...
T Consensus       118 ~L~~n~~~~L~~LPs-------sLk~L~I~~~n~~~~~~---------lp~---~LPsSLk~L~Is~c~~i~LP~~-LP~  177 (426)
T PRK15386        118 EIKGSATDSIKNVPN-------GLTSLSINSYNPENQAR---------IDN---LISPSLKTLSLTGCSNIILPEK-LPE  177 (426)
T ss_pred             EeCCCCCcccccCcc-------hHhheeccccccccccc---------ccc---ccCCcccEEEecCCCcccCccc-ccc
Confidence            665532  2333443       4666666432211 000         010   12 5788888887776555543 235


Q ss_pred             CCcEEEEEe
Q 016966          288 KLERYSIYI  296 (379)
Q Consensus       288 ~L~~L~l~~  296 (379)
                      +|+.|.+..
T Consensus       178 SLk~L~ls~  186 (426)
T PRK15386        178 SLQSITLHI  186 (426)
T ss_pred             cCcEEEecc
Confidence            777777743

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.68  E-value=9e-05  Score=63.39  Aligned_cols=143  Identities=15%  Similarity=0.159  Sum_probs=94.6

Q ss_pred             cCCCCCcEEEeecCCCCC--c----ccccCcCCCcEEEeeCCcCc----ccch-------hhcCCCCCCEEeccCCCCCc
Q 016966          158 GLLSNLRTLSLCSCGLPD--I----SFVGYLKKLEILCLRGSDIV----KLPV-------EVGELTWLKLLDLRDCCFLK  220 (379)
Q Consensus       158 ~~l~~L~~L~l~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~----~lp~-------~~~~l~~L~~L~l~~~~~~~  220 (379)
                      ..+..+..+++++|.|..  .    ..+.+-.+|+..+++.....    +++.       .+-++|+|+..++++|-+..
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            335566677777777654  2    33444567777777765222    3333       45689999999999998877


Q ss_pred             ccChhh---hCCCCCCcEEEecCCCCcChhhhhhcccc---cchHhhcCCCCCcEEEeeccCCCCCCccc------cccC
Q 016966          221 VIPPNI---LSKLSHLEELYIGRESFVDWEEEVEGVKN---ASLEELKHLPNLTSLEVHVRDVSSLPRGL------LLEK  288 (379)
Q Consensus       221 ~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~------~~~~  288 (379)
                      ..|...   +++-+.|.+|.+.+|.+......-.|..-   +........|.|+.+....|.+...|...      .-.+
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~  186 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN  186 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence            777542   67778999999999988754422222110   12233446688999999988888766543      1258


Q ss_pred             CcEEEEEeeccc
Q 016966          289 LERYSIYIRRYF  300 (379)
Q Consensus       289 L~~L~l~~~~~~  300 (379)
                      |+.+.+..++..
T Consensus       187 lk~vki~qNgIr  198 (388)
T COG5238         187 LKEVKIQQNGIR  198 (388)
T ss_pred             ceeEEeeecCcC
Confidence            889988777665

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.66  E-value=3.1e-06  Score=76.22  Aligned_cols=40  Identities=20%  Similarity=0.101  Sum_probs=25.1

Q ss_pred             cccceeeccccccccccccccccccccCCCCcEEEecCCCCcc
Q 016966          330 QRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLAL  372 (379)
Q Consensus       330 ~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~  372 (379)
                      ..|+.|.+.+|+  .+.+-.-.. ...+++|+++++.+|...+
T Consensus       401 ~~l~~lEL~n~p--~i~d~~Le~-l~~c~~Leri~l~~~q~vt  440 (483)
T KOG4341|consen  401 EGLEVLELDNCP--LITDATLEH-LSICRNLERIELIDCQDVT  440 (483)
T ss_pred             cccceeeecCCC--CchHHHHHH-HhhCcccceeeeechhhhh
Confidence            667777888777  444333222 2347778888777776654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.65  E-value=4.8e-06  Score=63.63  Aligned_cols=94  Identities=15%  Similarity=0.195  Sum_probs=47.1

Q ss_pred             cccCcCCCcEEEeeCCcCcccchhhc-CCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhccccc
Q 016966          178 FVGYLKKLEILCLRGSDIVKLPVEVG-ELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNA  256 (379)
Q Consensus       178 ~~~~l~~L~~L~l~~~~l~~lp~~~~-~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  256 (379)
                      .+.+...|...++++|.+..+|..+. +.+.+++|++.+|. +.++|.+ +..++.|+.|+++.|++..           
T Consensus        48 ~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE-~Aam~aLr~lNl~~N~l~~-----------  114 (177)
T KOG4579|consen   48 MLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEE-LAAMPALRSLNLRFNPLNA-----------  114 (177)
T ss_pred             HHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHH-HhhhHHhhhcccccCcccc-----------
Confidence            33444455555555555555554443 23345555555533 4455555 4555555555555555543           


Q ss_pred             chHhhcCCCCCcEEEeeccCCCCCCccc
Q 016966          257 SLEELKHLPNLTSLEVHVRDVSSLPRGL  284 (379)
Q Consensus       257 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~  284 (379)
                      .+..+..+.+|-.|+...|....++-..
T Consensus       115 ~p~vi~~L~~l~~Lds~~na~~eid~dl  142 (177)
T KOG4579|consen  115 EPRVIAPLIKLDMLDSPENARAEIDVDL  142 (177)
T ss_pred             chHHHHHHHhHHHhcCCCCccccCcHHH
Confidence            2333434455555555555555555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.62  E-value=0.00014  Score=59.49  Aligned_cols=97  Identities=18%  Similarity=0.176  Sum_probs=59.9

Q ss_pred             CccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-----CCccccCCCC
Q 016966           88 HFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-----LPSSLGLLSN  162 (379)
Q Consensus        88 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-----lp~~i~~l~~  162 (379)
                      ....+++++|++..++.+..++.|.+|.+..|.++.        +.+.+-..+++|.+|.+.+|+     -...+..+++
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~--------I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~  114 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITR--------IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK  114 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCccee--------eccchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence            455677777777777777777888888888866433        333333445667777777766     1223455666


Q ss_pred             CcEEEeecCCCCC-----cccccCcCCCcEEEeeC
Q 016966          163 LRTLSLCSCGLPD-----ISFVGYLKKLEILCLRG  192 (379)
Q Consensus       163 L~~L~l~~~~l~~-----~~~~~~l~~L~~L~l~~  192 (379)
                      |++|.+-+|.++.     .--+.++++|++||..+
T Consensus       115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            6666666666544     23455566666666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.42  E-value=6.7e-06  Score=70.34  Aligned_cols=98  Identities=21%  Similarity=0.127  Sum_probs=74.8

Q ss_pred             CCceeEEEecCCC--CCccccCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccch--hhcCCCCCCEEeccC
Q 016966          140 MIEVRVVNLTDMI--LPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPV--EVGELTWLKLLDLRD  215 (379)
Q Consensus       140 l~~L~~L~l~~~~--lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~  215 (379)
                      +.+.+.|++-+|.  ...-..+|+.|++|.|+-|+|+....+..+++|+.|.|+.|.|..+-+  .+.++|+|+.|.+..
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence            5567778888887  222346788899999999998888888888999999999888876653  677888888888888


Q ss_pred             CCCCcccCh----hhhCCCCCCcEEE
Q 016966          216 CCFLKVIPP----NILSKLSHLEELY  237 (379)
Q Consensus       216 ~~~~~~~~~----~~l~~l~~L~~L~  237 (379)
                      |...+.-+.    .++.-||+|++|+
T Consensus        98 NPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   98 NPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             CCcccccchhHHHHHHHHcccchhcc
Confidence            777666553    2356678888875

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.32  E-value=1.2e-05  Score=68.86  Aligned_cols=96  Identities=22%  Similarity=0.197  Sum_probs=71.9

Q ss_pred             CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--CCccccCCCCCcEEEeecCCCCC---cccccC
Q 016966          107 ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--LPSSLGLLSNLRTLSLCSCGLPD---ISFVGY  181 (379)
Q Consensus       107 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--lp~~i~~l~~L~~L~l~~~~l~~---~~~~~~  181 (379)
                      .+.+.+.|++-|+.+++.          ++..+|+.|++|.|+-|.  ....+..+++|+.|+|..|.|.+   +..+.+
T Consensus        17 dl~~vkKLNcwg~~L~DI----------sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLkn   86 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI----------SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKN   86 (388)
T ss_pred             HHHHhhhhcccCCCccHH----------HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhc
Confidence            355667777777555442          567789999999999988  44567888899999999999887   577888


Q ss_pred             cCCCcEEEeeCCcCc--ccc----hhhcCCCCCCEEe
Q 016966          182 LKKLEILCLRGSDIV--KLP----VEVGELTWLKLLD  212 (379)
Q Consensus       182 l~~L~~L~l~~~~l~--~lp----~~~~~l~~L~~L~  212 (379)
                      +++|++|.|..|.-.  .-+    ..+..+|+|+.|+
T Consensus        87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            999999999887322  222    2466788888886

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.30  E-value=1.7e-05  Score=71.56  Aligned_cols=263  Identities=16%  Similarity=0.128  Sum_probs=152.8

Q ss_pred             CccCCccEEEEeCCCC-C--CCCCCC-CCCCccEEEeecCCCCCCCCCCCcc-cChhhhhCCCceeEEEecCCC-CC---
Q 016966           84 STIKHFTSIVLHGIKP-N--LLPEVL-ECPQLELLFIRGGGRDDPWETSPVT-IPDNFFKSMIEVRVVNLTDMI-LP---  154 (379)
Q Consensus        84 ~~~~~l~~L~l~~~~~-~--~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~-lp---  154 (379)
                      ...+++.+|.+.+|.. +  ..-.+. .+++++.+.+..+.   .    ++. ....+-..+++|++|+++.|. +.   
T Consensus       161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~---~----iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~g  233 (483)
T KOG4341|consen  161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS---S----ITDVSLKYLAEGCRKLKYLNLSWCPQISGNG  233 (483)
T ss_pred             hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc---h----hHHHHHHHHHHhhhhHHHhhhccCchhhcCc
Confidence            4678999999988863 1  111233 78999999988832   1    222 222344678999999999998 21   


Q ss_pred             --ccccCCCCCcEEEeecCCCCCcccc----cCcCCCcEEEeeCC-cCc--ccchhhcCCCCCCEEeccCCCCCcccChh
Q 016966          155 --SSLGLLSNLRTLSLCSCGLPDISFV----GYLKKLEILCLRGS-DIV--KLPVEVGELTWLKLLDLRDCCFLKVIPPN  225 (379)
Q Consensus       155 --~~i~~l~~L~~L~l~~~~l~~~~~~----~~l~~L~~L~l~~~-~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~  225 (379)
                        ........++.+.+.+|.-.+.+.+    +.+.-+..+++..| .++  .+...-..+..|+.|..++|......+..
T Consensus       234 v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~  313 (483)
T KOG4341|consen  234 VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLW  313 (483)
T ss_pred             chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHH
Confidence              2334455677776677652222222    22334556666666 333  22222345677888888887765554432


Q ss_pred             hh-CCCCCCcEEEecCCCCcChhhhhhcccccchHhh-cCCCCCcEEEeeccCCC-C--CC-ccccccCCcEEEEEeecc
Q 016966          226 IL-SKLSHLEELYIGRESFVDWEEEVEGVKNASLEEL-KHLPNLTSLEVHVRDVS-S--LP-RGLLLEKLERYSIYIRRY  299 (379)
Q Consensus       226 ~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~-~--~~-~~~~~~~L~~L~l~~~~~  299 (379)
                      .+ .+.++|+.|.+.+|...+..         -...+ .+++.|+.+++..+... .  +. ...+++.|+.++++++..
T Consensus       314 aLg~~~~~L~~l~l~~c~~fsd~---------~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~  384 (483)
T KOG4341|consen  314 ALGQHCHNLQVLELSGCQQFSDR---------GFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCEL  384 (483)
T ss_pred             HHhcCCCceEEEeccccchhhhh---------hhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhh
Confidence            22 45578888888887643211         13333 35577888888755433 1  11 122678888888764432


Q ss_pred             cccC----cc----cccceEEEEeCCcccchHHHHHH---hcccceeeccccccccccccccccccccCCCCcEEE
Q 016966          300 FSRK----TG----IWCRQFRVELNNKICLKDSLIVQ---LQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLR  364 (379)
Q Consensus       300 ~~~~----~~----~~~~~~~L~l~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~  364 (379)
                      -...    ..    .......+.++++..+++...+.   .+.|+.+++..|.  .+..-+..-+...+|+++...
T Consensus       385 itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q--~vtk~~i~~~~~~lp~i~v~a  458 (483)
T KOG4341|consen  385 ITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ--DVTKEAISRFATHLPNIKVHA  458 (483)
T ss_pred             hhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh--hhhhhhhHHHHhhCccceehh
Confidence            2111    00    01111255666666666554322   4789999999998  666555544455678777653

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.21  E-value=0.00012  Score=62.25  Aligned_cols=82  Identities=28%  Similarity=0.322  Sum_probs=40.9

Q ss_pred             CCCcEEEeecCCCCCcccccCcCCCcEEEeeCC--cCc-ccchhhcCCCCCCEEeccCCCC--CcccChhhhCCCCCCcE
Q 016966          161 SNLRTLSLCSCGLPDISFVGYLKKLEILCLRGS--DIV-KLPVEVGELTWLKLLDLRDCCF--LKVIPPNILSKLSHLEE  235 (379)
Q Consensus       161 ~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~--~l~-~lp~~~~~l~~L~~L~l~~~~~--~~~~~~~~l~~l~~L~~  235 (379)
                      ..|++|++.++.++....+-.|++|++|.++.|  .+. .++....++|+|++|++++|+.  +..++.  +..+.+|..
T Consensus        43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~~  120 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLKS  120 (260)
T ss_pred             cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchhh
Confidence            344445455554444444445556666666655  322 4444444556666666665542  122222  345555555


Q ss_pred             EEecCCCCc
Q 016966          236 LYIGRESFV  244 (379)
Q Consensus       236 L~l~~~~~~  244 (379)
                      |++..|..+
T Consensus       121 Ldl~n~~~~  129 (260)
T KOG2739|consen  121 LDLFNCSVT  129 (260)
T ss_pred             hhcccCCcc
Confidence            655555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.12  E-value=4.2e-05  Score=58.63  Aligned_cols=104  Identities=18%  Similarity=0.231  Sum_probs=60.6

Q ss_pred             ccEEEEeCCCCCCCCC----CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCC
Q 016966           89 FTSIVLHGIKPNLLPE----VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLS  161 (379)
Q Consensus        89 l~~L~l~~~~~~~~~~----~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~  161 (379)
                      ...++++.|.+-.++.    .+....|+...+++|.+        ..+|+.+-..++.+..|++.+|.   +|..+..++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f--------k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~  100 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF--------KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMP  100 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchh--------hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhH
Confidence            3445666665533332    23445566666777543        33455554455566666666666   666666666


Q ss_pred             CCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccch
Q 016966          162 NLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPV  200 (379)
Q Consensus       162 ~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~  200 (379)
                      .|+.|+++.|.+.. |..+..|.+|-.|+..++.+.++|.
T Consensus       101 aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~  140 (177)
T KOG4579|consen  101 ALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV  140 (177)
T ss_pred             HhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence            66666666666555 5555556666666666665555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.12  E-value=0.00011  Score=70.86  Aligned_cols=162  Identities=24%  Similarity=0.339  Sum_probs=87.7

Q ss_pred             CCCCccEEEeecCCCCCCCCCCCccc-ChhhhhCCCceeEEEecCC-C--------CCccccCCCCCcEEEeecCC-CCC
Q 016966          107 ECPQLELLFIRGGGRDDPWETSPVTI-PDNFFKSMIEVRVVNLTDM-I--------LPSSLGLLSNLRTLSLCSCG-LPD  175 (379)
Q Consensus       107 ~~~~L~~L~l~~n~~~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~-~--------lp~~i~~l~~L~~L~l~~~~-l~~  175 (379)
                      .++.|+.+.+.++..       .... -..+...+++|+.|+++++ .        .......+.+|+.|+++.+. +++
T Consensus       186 ~~~~L~~l~l~~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd  258 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSK-------ITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD  258 (482)
T ss_pred             hCchhhHhhhccccc-------CChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc
Confidence            356777777666211       1111 1234456778888888762 1        12233445777888888777 555


Q ss_pred             --cccccC-cCCCcEEEeeCCc-Cc--ccchhhcCCCCCCEEeccCCCCCcc--cChhhhCCCCCCcEEEecCCC----C
Q 016966          176 --ISFVGY-LKKLEILCLRGSD-IV--KLPVEVGELTWLKLLDLRDCCFLKV--IPPNILSKLSHLEELYIGRES----F  243 (379)
Q Consensus       176 --~~~~~~-l~~L~~L~l~~~~-l~--~lp~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~----~  243 (379)
                        ...+.. +++|++|.+.+|. ++  .+-.....++.|++|+++.|.....  +... ..++++|+.|.+....    +
T Consensus       259 ~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~~~c~~l  337 (482)
T KOG1947|consen  259 IGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSLNGCPSL  337 (482)
T ss_pred             hhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhcCCCccH
Confidence              444443 6788888877774 44  4444455677788888887765422  2222 3445666665444332    1


Q ss_pred             cChhhhhhc--c---cccchHhhcCCCCCcEEEeeccCCC
Q 016966          244 VDWEEEVEG--V---KNASLEELKHLPNLTSLEVHVRDVS  278 (379)
Q Consensus       244 ~~~~~~~~~--~---~~~~~~~l~~l~~L~~L~l~~~~~~  278 (379)
                      ....  ..+  .   ..........+++++.+.+..+...
T Consensus       338 ~~~~--l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~  375 (482)
T KOG1947|consen  338 TDLS--LSGLLTLTSDDLAELILRSCPKLTDLSLSYCGIS  375 (482)
T ss_pred             HHHH--HHHhhccCchhHhHHHHhcCCCcchhhhhhhhcc
Confidence            1111  000  1   1222334556677777777665533

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.06  E-value=0.00028  Score=60.09  Aligned_cols=103  Identities=26%  Similarity=0.285  Sum_probs=73.6

Q ss_pred             CcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCC--CCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccch
Q 016966          181 YLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDC--CFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASL  258 (379)
Q Consensus       181 ~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  258 (379)
                      ....|+.|.+.++.++.+. .+..|++|+.|.++.|  .....++.. ...+|+|++|.+++|.+....         ..
T Consensus        41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~ls---------tl  109 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLS---------TL  109 (260)
T ss_pred             cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCcccccc---------cc
Confidence            4456777777777766554 4568899999999998  444555544 456699999999999998654         56


Q ss_pred             HhhcCCCCCcEEEeeccCCCCCCcc---c--cccCCcEEEE
Q 016966          259 EELKHLPNLTSLEVHVRDVSSLPRG---L--LLEKLERYSI  294 (379)
Q Consensus       259 ~~l~~l~~L~~L~l~~~~~~~~~~~---~--~~~~L~~L~l  294 (379)
                      ..+..+.+|..|++..|..+.+-..   +  .+++|+.|+-
T Consensus       110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            6677788899999987766643322   1  3677776654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.53  E-value=0.015  Score=44.98  Aligned_cols=102  Identities=17%  Similarity=0.227  Sum_probs=43.9

Q ss_pred             ChhhhhCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccch-hhcCCC
Q 016966          133 PDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPV-EVGELT  206 (379)
Q Consensus       133 ~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~  206 (379)
                      +...|.++.+|+.+.+...-   -...+..+.+|+.+.+..+ +..  -..+..+++|+.+.+.. .+..++. .+..++
T Consensus         4 ~~~~F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             -TTTTTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             CHHHHhCCCCCCEEEECCCeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence            34456666666666665432   2233455556666666553 443  24455555666666644 3444443 334466


Q ss_pred             CCCEEeccCCCCCcccChhhhCCCCCCcEEEec
Q 016966          207 WLKLLDLRDCCFLKVIPPNILSKLSHLEELYIG  239 (379)
Q Consensus       207 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  239 (379)
                      +|+.+.+..+  ...++...+.+. +|+.+.+.
T Consensus        82 ~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   82 NLKNIDIPSN--ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             TECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred             cccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence            6666666442  334444445554 66666554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.96  E-value=0.0035  Score=31.96  Aligned_cols=21  Identities=29%  Similarity=0.570  Sum_probs=13.5

Q ss_pred             CCcEEEeeCCcCcccchhhcC
Q 016966          184 KLEILCLRGSDIVKLPVEVGE  204 (379)
Q Consensus       184 ~L~~L~l~~~~l~~lp~~~~~  204 (379)
                      +|++|++++|+++.+|.++++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            466777777777666665443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.64  E-value=0.0025  Score=61.53  Aligned_cols=126  Identities=26%  Similarity=0.277  Sum_probs=67.4

Q ss_pred             CCCCcEEEeecCC-CCC--c-ccccCcCCCcEEEeeCC--cCcc----cchhhcCCCCCCEEeccCCCCCcccChhhh-C
Q 016966          160 LSNLRTLSLCSCG-LPD--I-SFVGYLKKLEILCLRGS--DIVK----LPVEVGELTWLKLLDLRDCCFLKVIPPNIL-S  228 (379)
Q Consensus       160 l~~L~~L~l~~~~-l~~--~-~~~~~l~~L~~L~l~~~--~l~~----lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l-~  228 (379)
                      .+.|+.|.+.++. +..  . +....+++|+.|+++++  ....    .......+.+|++|+++.+....+.....+ .
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            5666777776664 443  2 44455677777777662  1111    112334556777777777664333322222 2


Q ss_pred             CCCCCcEEEecCCC-CcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC-C--CCccc-cccCCcEEEE
Q 016966          229 KLSHLEELYIGRES-FVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS-S--LPRGL-LLEKLERYSI  294 (379)
Q Consensus       229 ~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~--~~~~~-~~~~L~~L~l  294 (379)
                      .+++|++|.+.+|. +++..         +......++.|++|+++++... .  +.... .+++|+.+.+
T Consensus       267 ~c~~L~~L~l~~c~~lt~~g---------l~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEG---------LVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL  328 (482)
T ss_pred             hCCCcceEccCCCCccchhH---------HHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence            36777777766565 34332         4444556677777777755443 1  11111 4566666544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.11  E-value=0.1  Score=40.21  Aligned_cols=84  Identities=12%  Similarity=0.187  Sum_probs=33.7

Q ss_pred             CcccChhhhhCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccch-hh
Q 016966          129 PVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPV-EV  202 (379)
Q Consensus       129 ~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~~  202 (379)
                      ...+....|..+..|+.+.+..+-   ....+..+..|+.+.+.. .+..  ...+..+++|+.+.+..+ +..++. .+
T Consensus        23 ~~~I~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f  100 (129)
T PF13306_consen   23 IKKIGENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSF  100 (129)
T ss_dssp             --EE-TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTT
T ss_pred             eeEeChhhcccccccccccccccccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhh
Confidence            334455555555556666555433   112344444556665543 2222  234445566666666443 444443 23


Q ss_pred             cCCCCCCEEeccC
Q 016966          203 GELTWLKLLDLRD  215 (379)
Q Consensus       203 ~~l~~L~~L~l~~  215 (379)
                      .+. +|+.+.+..
T Consensus       101 ~~~-~l~~i~~~~  112 (129)
T PF13306_consen  101 SNC-NLKEINIPS  112 (129)
T ss_dssp             TT--T--EEE-TT
T ss_pred             cCC-CceEEEECC
Confidence            444 666665543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.86  E-value=0.019  Score=27.16  Aligned_cols=16  Identities=31%  Similarity=0.515  Sum_probs=7.1

Q ss_pred             CCcEEEeeCCcCcccc
Q 016966          184 KLEILCLRGSDIVKLP  199 (379)
Q Consensus       184 ~L~~L~l~~~~l~~lp  199 (379)
                      +|++|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4566666666655544

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.47  E-value=0.035  Score=45.84  Aligned_cols=74  Identities=28%  Similarity=0.337  Sum_probs=43.1

Q ss_pred             ceeEEEecCCC----CCccccCCCCCcEEEeecCC-CCC--cccccCc-CCCcEEEeeCC-cCccc-chhhcCCCCCCEE
Q 016966          142 EVRVVNLTDMI----LPSSLGLLSNLRTLSLCSCG-LPD--ISFVGYL-KKLEILCLRGS-DIVKL-PVEVGELTWLKLL  211 (379)
Q Consensus       142 ~L~~L~l~~~~----lp~~i~~l~~L~~L~l~~~~-l~~--~~~~~~l-~~L~~L~l~~~-~l~~l-p~~~~~l~~L~~L  211 (379)
                      .++.++.+++.    --+.+..+..++.|.+.+|. +.+  ...++.+ ++|+.|++++| +|++- -..+.++++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            35667776665    23345566666677777776 443  4445443 56777777766 55522 2255666666666


Q ss_pred             eccC
Q 016966          212 DLRD  215 (379)
Q Consensus       212 ~l~~  215 (379)
                      ++.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            6655

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.15  E-value=0.2  Score=26.45  Aligned_cols=21  Identities=29%  Similarity=0.377  Sum_probs=13.9

Q ss_pred             cCCCcEEEeeCCcCcccchhh
Q 016966          182 LKKLEILCLRGSDIVKLPVEV  202 (379)
Q Consensus       182 l~~L~~L~l~~~~l~~lp~~~  202 (379)
                      +++|++|++++|.++.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            356777777777777776543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.15  E-value=0.2  Score=26.45  Aligned_cols=21  Identities=29%  Similarity=0.377  Sum_probs=13.9

Q ss_pred             cCCCcEEEeeCCcCcccchhh
Q 016966          182 LKKLEILCLRGSDIVKLPVEV  202 (379)
Q Consensus       182 l~~L~~L~l~~~~l~~lp~~~  202 (379)
                      +++|++|++++|.++.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            356777777777777776543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.01  E-value=0.054  Score=44.74  Aligned_cols=78  Identities=19%  Similarity=0.151  Sum_probs=43.3

Q ss_pred             CCcEEEeecCCCCC--cccccCcCCCcEEEeeCC-cCc--ccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEE
Q 016966          162 NLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGS-DIV--KLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEEL  236 (379)
Q Consensus       162 ~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~-~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L  236 (379)
                      .++.++-+++.|..  ...+..++.++.|.+.+| .+.  .+..--+-.++|+.|++++|..+.+.....+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            35556666665544  566666666666666666 332  1111111345666666666666555554445666666666


Q ss_pred             Eec
Q 016966          237 YIG  239 (379)
Q Consensus       237 ~l~  239 (379)
                      .+.
T Consensus       182 ~l~  184 (221)
T KOG3864|consen  182 HLY  184 (221)
T ss_pred             Hhc
Confidence            555

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=88.89  E-value=0.0054  Score=58.66  Aligned_cols=180  Identities=20%  Similarity=0.147  Sum_probs=106.0

Q ss_pred             ccEEEEeCCCCCCCC------CCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCC-CceeEEEecCCC--------C
Q 016966           89 FTSIVLHGIKPNLLP------EVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSM-IEVRVVNLTDMI--------L  153 (379)
Q Consensus        89 l~~L~l~~~~~~~~~------~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~--------l  153 (379)
                      +.++++.+|.+..-.      .....+.|..|++.+|.+.+.    ........+... +.+++|.+..|.        +
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~----g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l  164 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDE----GARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPL  164 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccH----hHHHHHhhcccchHHHHHHHhhcccccccchHHH
Confidence            777888888773222      133667788888888776542    111111112222 456667777666        4


Q ss_pred             CccccCCCCCcEEEeecCCCCC------ccccc----CcCCCcEEEeeCCcCc-----ccchhhcCCCC-CCEEeccCCC
Q 016966          154 PSSLGLLSNLRTLSLCSCGLPD------ISFVG----YLKKLEILCLRGSDIV-----KLPVEVGELTW-LKLLDLRDCC  217 (379)
Q Consensus       154 p~~i~~l~~L~~L~l~~~~l~~------~~~~~----~l~~L~~L~l~~~~l~-----~lp~~~~~l~~-L~~L~l~~~~  217 (379)
                      .+.+....+++.++++.|.+..      +..+.    ...++++|++.+|.++     .+-..+...+. ++.+++..|.
T Consensus       165 ~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~  244 (478)
T KOG4308|consen  165 AAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK  244 (478)
T ss_pred             HHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence            4455567778888888887532      23333    3667888888888766     11223444455 6667777765


Q ss_pred             CCcccChhh---hCCC-CCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC
Q 016966          218 FLKVIPPNI---LSKL-SHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS  278 (379)
Q Consensus       218 ~~~~~~~~~---l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  278 (379)
                      .........   +..+ +.++++++..|++....      ...+...+..+++++.+.+..|.+.
T Consensus       245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~------~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKG------VRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             cchHHHHHHHHHhcccchhhhhhhhhcCCccccc------hHHHHHHHhhhHHHHHhhcccCccc
Confidence            443311111   3444 56788888888876543      2234555666677888888777654

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=85.81  E-value=0.59  Score=24.68  Aligned_cols=16  Identities=25%  Similarity=0.382  Sum_probs=12.2

Q ss_pred             CCCCcEEEecCCCCcc
Q 016966          357 SSHLKRLRLEGSDLAL  372 (379)
Q Consensus       357 ~~~L~~L~l~~c~~l~  372 (379)
                      +|+|++|+|++|+.++
T Consensus         1 c~~L~~L~l~~C~~it   16 (26)
T smart00367        1 CPNLRELDLSGCTNIT   16 (26)
T ss_pred             CCCCCEeCCCCCCCcC
Confidence            4778888888887664

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.65  E-value=0.018  Score=48.63  Aligned_cols=75  Identities=13%  Similarity=0.067  Sum_probs=33.1

Q ss_pred             CceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccC
Q 016966          141 IEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRD  215 (379)
Q Consensus       141 ~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~  215 (379)
                      +...+||++.+.   +-..++-+..|..|+++.+.+.. |.+.+.+..+..+++..|..+..|.+.+..+.+++++.-.
T Consensus        42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~  120 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKK  120 (326)
T ss_pred             ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhcc
Confidence            344444444444   33333333444444444444444 4444444444444444444444444444444444444433

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=84.97  E-value=0.01  Score=56.78  Aligned_cols=178  Identities=21%  Similarity=0.208  Sum_probs=114.4

Q ss_pred             ccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--------CCccccCC-CCCcEEEeecCCCCC------
Q 016966          111 LELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--------LPSSLGLL-SNLRTLSLCSCGLPD------  175 (379)
Q Consensus       111 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--------lp~~i~~l-~~L~~L~l~~~~l~~------  175 (379)
                      +..|.+.+|.+.+.    ....-...+.....|..|++++|.        +-..+... ..+++|++..|.+..      
T Consensus        89 l~~L~L~~~~l~~~----~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l  164 (478)
T KOG4308|consen   89 LLHLSLANNRLGDR----GAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPL  164 (478)
T ss_pred             HHHhhhhhCccccc----hHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHH
Confidence            77788888776553    222333445678889999999988        22233333 567888888888765      


Q ss_pred             cccccCcCCCcEEEeeCCcCc-----ccchhhc----CCCCCCEEeccCCCCCcccCh---hhhCCCCC-CcEEEecCCC
Q 016966          176 ISFVGYLKKLEILCLRGSDIV-----KLPVEVG----ELTWLKLLDLRDCCFLKVIPP---NILSKLSH-LEELYIGRES  242 (379)
Q Consensus       176 ~~~~~~l~~L~~L~l~~~~l~-----~lp~~~~----~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~-L~~L~l~~~~  242 (379)
                      ...+.+...++.++++.|.+.     .++..+.    ...++++|.+++|..+...-.   ..+...+. +..|++..|.
T Consensus       165 ~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~  244 (478)
T KOG4308|consen  165 AAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK  244 (478)
T ss_pred             HHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence            256667788999999999664     2233333    477899999988765432211   12445555 6668888777


Q ss_pred             CcChhhhhhcccccchHhhcCC-CCCcEEEeeccCCCCCCc-c----c-cccCCcEEEEEeec
Q 016966          243 FVDWEEEVEGVKNASLEELKHL-PNLTSLEVHVRDVSSLPR-G----L-LLEKLERYSIYIRR  298 (379)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~-~----~-~~~~L~~L~l~~~~  298 (379)
                      +.+..      .....+.+..+ ..++.+++..|.+..... .    + .++.++.+.+..+.
T Consensus       245 l~d~g------~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~  301 (478)
T KOG4308|consen  245 LGDVG------VEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP  301 (478)
T ss_pred             cchHH------HHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence            76532      22344555556 678999999888773222 1    1 46778888775443

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=81.49  E-value=0.91  Score=24.03  Aligned_cols=18  Identities=22%  Similarity=0.383  Sum_probs=14.5

Q ss_pred             CCCcEEEeeCCcCcccch
Q 016966          183 KKLEILCLRGSDIVKLPV  200 (379)
Q Consensus       183 ~~L~~L~l~~~~l~~lp~  200 (379)
                      ++|+.|++++|+++.+|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            468888888888888885

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	379
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 21/141 (14%)

Query: 153 LPSSLGLLSNLRTLSLCSCGLPDI-SFVGYLKKLEILCLRG-SDIVKLPVEVGELTWLKL 210
           LP+S+  L NL++L + +  L  +   + +L KLE L LRG + +   P   G    LK 
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257

Query: 211 LDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASL----EELKHLPN 266
           L L+DC  L  +P +I  +L+ LE+L +                  +L      +  LP 
Sbjct: 258 LILKDCSNLLTLPLDI-HRLTQLEKLDLR--------------GCVNLSRLPSLIAQLPA 302

Query: 267 LTSLEVHVRDVSSLPRGLLLE 287
              + V     + L +   + 
Sbjct: 303 NCIILVPPHLQAQLDQHRPVA 323

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.7 bits (174), Expect = 8e-14
 Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 23/150 (15%)

Query: 153 LPSSLGLLSNLRTLSLCSCGLPDI-SFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLL 211
            P     LS+L+ +++ + GL ++   +     LE L L  + +  LP  +  L  L+ L
Sbjct: 96  FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLREL 155

Query: 212 DLRDCCFLKVIPPNI--------LSKLSHLEELYIGRESFVDWEEEVEGVKNASL-EELK 262
            +R C  L  +P  +           L +L+ L +                  SL   + 
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR------------SLPASIA 203

Query: 263 HLPNLTSLEVHVRDVSSLPRGL-LLEKLER 291
           +L NL SL++    +S+L   +  L KLE 
Sbjct: 204 NLQNLKSLKIRNSPLSALGPAIHHLPKLEE 233

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.1 bits (162), Expect = 3e-12
 Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 23/131 (17%)

Query: 147 NLTDMILPSSLGLLSNLRTLSLCSCGLPDI-SFVGYLKKLEILCLRGSDIVKLPVEVGEL 205
            L           L NL++L L   G+  + + +  L+ L+ L +R S +  L   +  L
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHL 228

Query: 206 TWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLP 265
             L+ LDLR C  L+  PP      + L+ L +   S                  L  LP
Sbjct: 229 PKLEELDLRGCTALRNYPPIF-GGRAPLKRLILKDCS-----------------NLLTLP 270

Query: 266 ----NLTSLEV 272
                LT LE 
Sbjct: 271 LDIHRLTQLEK 281

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 25/150 (16%), Positives = 47/150 (31%), Gaps = 9/150 (6%)

Query: 147 NLTDMILPSSLGLLSNLRTLSLCSCGL---PDISFVGYLKKLEILCLRGSDIVKLPVEVG 203
           +             +N +  +     L    D+           L LR   + + P +  
Sbjct: 42  DRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAF 101

Query: 204 ELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELK- 262
            L+ L+ + + D   L  +P  +  + + LE L + R         +  +    L EL  
Sbjct: 102 RLSHLQHMTI-DAAGLMELPDTM-QQFAGLETLTLARNPLRALPASIASLNR--LRELSI 157

Query: 263 -HLPNLTSLEVHVRDVSSLPRGLLLEKLER 291
              P LT L   +    +      L  L+ 
Sbjct: 158 RACPELTELPEPLASTDASGEHQGLVNLQS 187

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.6 bits (127), Expect = 7e-08
 Identities = 21/143 (14%), Positives = 39/143 (27%), Gaps = 20/143 (13%)

Query: 153 LPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKL-- 210
               L                            +I    G  +      + + T      
Sbjct: 28  YHDVLSQWQRHYNADRNRWHSAWR--QANSNNPQIETRTGRALKATADLLEDATQPGRVA 85

Query: 211 LDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASL-EELKHLPNLTS 269
           L+LR    L   P     +LSHL+ + I     +             L + ++    L +
Sbjct: 86  LELR-SVPLPQFPDQA-FRLSHLQHMTIDAAGLM------------ELPDTMQQFAGLET 131

Query: 270 LEVHVRDVSSLPRGL-LLEKLER 291
           L +    + +LP  +  L +L  
Sbjct: 132 LTLARNPLRALPASIASLNRLRE 154

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 8/83 (9%)

Query: 153 LPSSLGLLSNLRTLSLCSC----GLPDISFVGYLKKLEILCLRG-SDIVKLPVEVGELTW 207
            P   G  + L+ L L  C     LP    +  L +LE L LRG  ++ +LP  + +L  
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLTLPL--DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302

Query: 208 LKLLDLRDCCFLKVIPPNILSKL 230
             ++ +        +  +     
Sbjct: 303 NCIILVPP-HLQAQLDQHRPVAR 324

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 68.2 bits (167), Expect = 9e-13
 Identities = 42/171 (24%), Positives = 66/171 (38%), Gaps = 23/171 (13%)

Query: 131 TIPDNFFKSMIEVRVVNLTD----MILPSSLGLLSNLRTLSLCSCGLPDIS---FVGYLK 183
            I  N FK +  + ++ L+      I   +   L+NL TL L    L  I    FV  L 
Sbjct: 78  IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY-LS 136

Query: 184 KLEILCLRGSDIVKLPVEV-GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRES 242
           KL+ L LR + I  +P      +  L+ LDL +   L  I       LS+L  L +   +
Sbjct: 137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196

Query: 243 FVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLL--LEKLER 291
                          +  L  L  L  L++    +S++  G    L  L++
Sbjct: 197 L------------REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 53.6 bits (129), Expect = 5e-08
 Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 23/171 (13%)

Query: 131 TIPDNFFKSMIEVRVVNLTD----MILPSSLGLLSNLRTLSLCSC----GLPDISFVGYL 182
           TIP+  F  + +++ + L +     I   +   + +LR L L        + + +F G L
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG-L 184

Query: 183 KKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRES 242
             L  L L   ++ ++P  +  L  L  LDL     L  I P     L HL++L++ +  
Sbjct: 185 SNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQ 242

Query: 243 FVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLL--LEKLER 291
               E               +L +L  + +   +++ LP  L   L  LER
Sbjct: 243 IQVIERNA----------FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.4 bits (155), Expect = 5e-12
 Identities = 28/155 (18%), Positives = 61/155 (39%), Gaps = 18/155 (11%)

Query: 130 VTIPDNFFKSMIEVRVVNLTDMILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILC 189
           V IPD+ FK+   +  +         +   +++L  ++L +  + D++ + Y   ++ L 
Sbjct: 15  VNIPDSTFKA--YLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLT 72

Query: 190 LRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEE 249
           +           +  L+ L+ L +          PN LS L+ L  L I           
Sbjct: 73  INNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISH--------- 121

Query: 250 VEGVKNASLEELKHLPNLTSLEVH----VRDVSSL 280
                ++ L ++  LP + S+++     + D+  L
Sbjct: 122 -SAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL 155

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 19/138 (13%)

Query: 147 NLTDMILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVE-VGEL 205
           N+TD+   + +    N++ L++ +    + + +  L  LE L + G D+    +  +  L
Sbjct: 55  NVTDL---TGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGL 111

Query: 206 TWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLP 265
           T L LLD+             ++ L  +  + +     +             +  LK LP
Sbjct: 112 TSLTLLDISH-SAHDDSILTKINTLPKVNSIDLSYNGAI-----------TDIMPLKTLP 159

Query: 266 NLTSLEV---HVRDVSSL 280
            L SL +    V D   +
Sbjct: 160 ELKSLNIQFDGVHDYRGI 177

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 6/95 (6%)

Query: 147 NLTDMILPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPVEVGE 204
           ++T      +L  L++L  L +      D  ++ +  L K+  + L  +  +   + +  
Sbjct: 99  DVTS-DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKT 157

Query: 205 LTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIG 239
           L  LK L+++            +     L +LY  
Sbjct: 158 LPELKSLNIQFDGVHDYRG---IEDFPKLNQLYAF 189

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.8 bits (161), Expect = 6e-12
 Identities = 39/204 (19%), Positives = 73/204 (35%), Gaps = 41/204 (20%)

Query: 147 NLTDMILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELT 206
           N+TD +   S   L  + TL     G+  I  V YL  L  +    + +  +   +  LT
Sbjct: 35  NVTDTV---SQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT-PLKNLT 90

Query: 207 WLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPN 266
            L  + + +   +  I P  L+ L++L  L +      D            ++ LK+L N
Sbjct: 91  KLVDILMNN-NQIADITP--LANLTNLTGLTLFNNQITD------------IDPLKNLTN 135

Query: 267 LTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLI 326
           L  LE+    +S +     L  L+                     ++   N++      +
Sbjct: 136 LNRLELSSNTISDISALSGLTSLQ---------------------QLSFGNQV-TDLKPL 173

Query: 327 VQLQRIEDLELSELQEQDVDYFRN 350
             L  +E L++S  +  D+     
Sbjct: 174 ANLTTLERLDISSNKVSDISVLAK 197

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 16/137 (11%)

Query: 154 PSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDL 213
            S L  L+NL +L   +  + DI+ +G L  L+ L L G+ +  +   +  LT L  LDL
Sbjct: 192 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDL 250

Query: 214 RDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVH 273
            +   +  + P  LS L+ L EL +G     +            +  L  L  LT+LE++
Sbjct: 251 AN-NQISNLAP--LSGLTKLTELKLGANQISN------------ISPLAGLTALTNLELN 295

Query: 274 VRDVSSLPRGLLLEKLE 290
              +  +     L+ L 
Sbjct: 296 ENQLEDISPISNLKNLT 312

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 16/131 (12%)

Query: 155 SSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLR 214
           S L  L+ L  L L    L DIS +  LK L  L L  ++I  +   V  LT L+ L   
Sbjct: 281 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFY 339

Query: 215 DCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHV 274
           +   +  +    L+ L+++  L  G     D            L  L +L  +T L ++ 
Sbjct: 340 NN-KVSDVSS--LANLTNINWLSAGHNQISD------------LTPLANLTRITQLGLND 384

Query: 275 RDVSSLPRGLL 285
           +  ++ P    
Sbjct: 385 QAWTNAPVNYK 395

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 16/119 (13%)

Query: 155 SSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLR 214
            +   L+      L    + D      L ++  L      I  +   V  L  L  ++  
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFS 76

Query: 215 DCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVH 273
           +   L  I P  L  L+ L ++ +      D            +  L +L NLT L + 
Sbjct: 77  N-NQLTDITP--LKNLTKLVDILMNNNQIAD------------ITPLANLTNLTGLTLF 120

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 155 SSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLR 214
           S +  L+ L+ L   +  + D+S +  L  +  L    + I  L   +  LT +  L L 
Sbjct: 325 SPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLT-PLANLTRITQLGLN 383

Query: 215 DCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEV 272
           D       P N  + +S    +     + +            +   +    + T  ++
Sbjct: 384 D-QAWTNAPVNYKANVSIPNTVKNVTGALI------------APATISDGGSYTEPDI 428

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 2/85 (2%)

Query: 154 PSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDL 213
            SSL  L+N+  LS     + D++ +  L ++  L L        PV       + + + 
Sbjct: 346 VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKAN--VSIPNT 403

Query: 214 RDCCFLKVIPPNILSKLSHLEELYI 238
                  +I P  +S      E  I
Sbjct: 404 VKNVTGALIAPATISDGGSYTEPDI 428

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.5 bits (160), Expect = 7e-12
 Identities = 39/171 (22%), Positives = 61/171 (35%), Gaps = 23/171 (13%)

Query: 131 TIPDNFFKSMIEVRVVNLTD----MILPSSLGLLSNLRTLSLCSCGLPDIS---FVGYLK 183
            I  + F+ +  + V+ L       I   +   L++L TL L    L  I    F   L 
Sbjct: 89  MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY-LS 147

Query: 184 KLEILCLRGSDIVKLPVEV-GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRES 242
           KL  L LR + I  +P      +  L  LDL +   L+ I       L +L+ L +G  +
Sbjct: 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207

Query: 243 FVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLL--LEKLER 291
                          +  L  L  L  LE+       +  G    L  L++
Sbjct: 208 I------------KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK 246

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 7/113 (6%)

Query: 131 TIPDNFFKSMIEVRVVNLTDM-----ILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKL 185
           +IP   F  +  +  ++L ++     I   +   L NL+ L+L  C + D+  +  L  L
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGL 220

Query: 186 EILCLRGSDIVKLPVEV-GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELY 237
           E L + G+   ++       L+ LK L + +   + +I  N    L+ L EL 
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELN 272

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.1 bits (120), Expect = 6e-07
 Identities = 37/171 (21%), Positives = 64/171 (37%), Gaps = 23/171 (13%)

Query: 131 TIPDNFFKSMIEVRVVNLTD----MILPSSLGLLSNLRTLSLCSC----GLPDISFVGYL 182
            IP   F+ + ++R + L +     I   +   + +L  L L        + + +F G L
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG-L 195

Query: 183 KKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRES 242
             L+ L L   +I  +P  +  L  L+ L++        I P     LS L++L++    
Sbjct: 196 FNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQ 253

Query: 243 FVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLL--LEKLER 291
               E                L +L  L +   ++SSLP  L   L  L  
Sbjct: 254 VSLIERNA----------FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE 294

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 21/163 (12%), Positives = 58/163 (35%), Gaps = 6/163 (3%)

Query: 131 TIPDNFFKSMIEVRVVNLTDMI--LPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEIL 188
            I  +   S+ + ++ NLT+ I  +  ++  L+ L+ +   +      +     +     
Sbjct: 416 PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD 475

Query: 189 CLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEE 248
             +  +     +    L  L  ++L +C  +  +P  +   L  L+ L I     +   +
Sbjct: 476 YAKQYEN--EELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQ 532

Query: 249 EVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLER 291
                   + ++    P +    +   ++   P    L+K+ +
Sbjct: 533 LKADWTRLA-DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK 574

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.4 bits (136), Expect = 7e-09
 Identities = 16/149 (10%), Positives = 43/149 (28%), Gaps = 14/149 (9%)

Query: 153 LPSSLG-LLSNLRTLSLCSC---GLPDISFVGYLKKLEILCLRGSDIVKLPVEVG----- 203
           +P         +  L         +P+I     +  +  +    + I      +      
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669

Query: 204 -ELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELK 262
            +      + L     ++  P  + +  S +  + +         E     K+ +    K
Sbjct: 670 YKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN---YK 725

Query: 263 HLPNLTSLEVHVRDVSSLPRGLLLEKLER 291
           +   LT++++    ++SL        L  
Sbjct: 726 NTYLLTTIDLRFNKLTSLSDDFRATTLPY 754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 21/129 (16%), Positives = 37/129 (28%), Gaps = 21/129 (16%)

Query: 131 TIPDNFFKSMIEVRVVNLTD-----------MILPSSLGLLSNLRTLSLCSC---GLPDI 176
             P   F +   +  + L++                +      L T+ L       L D 
Sbjct: 687 KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD 746

Query: 177 SFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLR------DCCFLKVIPPNILSKL 230
                L  L  + +  +     P +    + LK   +R          L+  P  I +  
Sbjct: 747 FRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI-TTC 805

Query: 231 SHLEELYIG 239
             L +L IG
Sbjct: 806 PSLIQLQIG 814

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 28/181 (15%), Positives = 55/181 (30%), Gaps = 28/181 (15%)

Query: 131 TIPDNFFKSMIEVRVVNLTDMIL---------PSSLGLLSNLRTLSLCSCGLPDI----- 176
           +   N   SM + + +N + + L                S + T+ L +  +  I     
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL 717

Query: 177 ----SFVGYLKKLEILCLRGSDIVKLPVE--VGELTWLKLLDLRDCCFLKVIPPNILSKL 230
                       L  + LR + +  L  +     L +L  +D+   C     P       
Sbjct: 718 KPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQP-LNS 775

Query: 231 SHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLL--LEK 288
           S L+   I  +   +    +          +   P+L  L++   D+  +   L   L  
Sbjct: 776 SQLKAFGIRHQRDAEGNRILRQWP----TGITTCPSLIQLQIGSNDIRKVDEKLTPQLYI 831

Query: 289 L 289
           L
Sbjct: 832 L 832

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 8e-08
 Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 10/148 (6%)

Query: 102 LPEVL-ECPQLELLFIRG--GGRDDPWETSPVTIPDNFFK----SMIEVRVVNLTDMILP 154
           LP+ L + P+L+ L I    G      +     + D+        +  +   NL +    
Sbjct: 507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566

Query: 155 SSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGE-LTWLKLLDL 213
           +SL  +  L  L      +  +   G   KL  L L  + I ++P +       ++ L  
Sbjct: 567 ASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF 626

Query: 214 RDCCFLKVIPPNI-LSKLSHLEELYIGR 240
                LK IP       +  +  +    
Sbjct: 627 SH-NKLKYIPNIFNAKSVYVMGSVDFSY 653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 35/208 (16%), Positives = 69/208 (33%), Gaps = 50/208 (24%)

Query: 132 IPDNFFKSMIEVRVVNLTDM----ILPSSLGLLSNLRTLSLCSCGLPDIS---------- 177
            P     +   V  ++L        +P ++G L+ L+ LS  +                 
Sbjct: 314 QPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTP 373

Query: 178 -----------------FVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCF-- 218
                            F+ Y ++L +  L    I + P E+  +     + L+D     
Sbjct: 374 DMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP-EMKPIKKDSRISLKDTQIGN 432

Query: 219 ----LKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASL---------EELKHLP 265
               +  I   I  +L+ L+ +Y     F      V+     S              +L 
Sbjct: 433 LTNRITFISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK 491

Query: 266 NLTSLEV-HVRDVSSLPRGLL-LEKLER 291
           +LT +E+ +  +++ LP  L  L +L+ 
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQS 519

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 48/277 (17%), Positives = 92/277 (33%), Gaps = 41/277 (14%)

Query: 131 TIPDNFFKSMIEVRVVNLTD----MILPSSLGLLSNLRTLSLCSCGL---PDISFVGYLK 183
            I     ++   ++V+ L       I   +   L +L  L L    L       F   L 
Sbjct: 40  YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP-LS 98

Query: 184 KLEILCLRGSDIVKLPV--EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE 241
            L+ L L G+    L V      LT L+ L + +      I     + L+ L EL I   
Sbjct: 99  SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

Query: 242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLL-----LEKLERYSIYI 296
           S  +++ +           LK + ++  L +H+ + + L          +  LE     +
Sbjct: 159 SLRNYQSQS----------LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208

Query: 297 RRYFSRKTGIWCRQFRVEL--NNKICLKDSLIVQLQRI-------EDLELSELQEQDVDY 347
            R+      +      ++        L D    +L ++        ++E  +     +  
Sbjct: 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD 268

Query: 348 FRN-------ELVKVGSSHLKRLRLEGSDLALNPAES 377
           F         EL KV +  ++RL +    L  + +  
Sbjct: 269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 32/173 (18%), Positives = 61/173 (35%), Gaps = 31/173 (17%)

Query: 131 TIPDNFFKSMIEVRVVNLTD-------MILPSSLGLLSNLRTLSLCSCGLPDISFVGY-- 181
            +P +F + +  +  ++L++       +   +  G   +L+TL L    L  +   G   
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383

Query: 182 --LKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIG 239
             LK L  L +  +    +P        ++ L+L     ++V+   I   L  L+     
Sbjct: 384 LTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSS-TGIRVVKTCIPQTLEVLD----- 437

Query: 240 RESFVDWEEEVEGVKNASLEEL-KHLPNLTSLEVHVRDVSSLPRGLLLEKLER 291
                        V N +L+     LP L  L +    + +LP   L   L  
Sbjct: 438 -------------VSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLV 477

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.7 bits (153), Expect = 7e-11
 Identities = 37/265 (13%), Positives = 76/265 (28%), Gaps = 35/265 (13%)

Query: 131 TIPDNFFKSMIEVRVVNLTD----MILPSSLGLLSNLRTLSLCSC---GLPDISFVGYLK 183
            IP     S      +  +      I  ++   L NL  L L  C    + + +F     
Sbjct: 26  EIPGTLPNS---TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS-QH 81

Query: 184 KLEILCLRGSDIVKLPVEV-GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRES 242
           +L+ L L  + ++ +          LK L       +  I    L     LE LY+G   
Sbjct: 82  RLDTLVLTANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNH 140

Query: 243 FVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLL--LEKLERYSIY----- 295
                       +  L +      L  L+     +  L +  +  L++    S+      
Sbjct: 141 I----------SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 296 ---IRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNEL 352
              I              F    N  +  K      +Q +      ++ ++D+       
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS--PAVF 248

Query: 353 VKVGSSHLKRLRLEGSDLALNPAES 377
             +    ++ + L+        + +
Sbjct: 249 EGLCEMSVESINLQKHYFFNISSNT 273

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 12/119 (10%)

Query: 131 TIPDNFFKSMIEVRVVNL-----TDMILPSSLGLLSNLRTLSLCSCGLPDIS--FVGYLK 183
           ++    FK   ++ +++L           S    L  L+ L+L    L   S      L 
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449

Query: 184 KLEILCLRGSDIVKLPVEV----GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYI 238
            L+ L L+G+   K  ++       L  L++L L  C  L  I  +  + L  +  + +
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDL 507

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 28/144 (19%), Positives = 51/144 (35%), Gaps = 12/144 (8%)

Query: 152 ILPSSLGLLSNLRTLSLCSCGLPDI-SFVGYLKKLEILCLRGSDIVKLPVEV-GELTWLK 209
           I  ++    S L+ L L +  L ++ S +  L  L+ L L  +    L          L 
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328

Query: 210 LLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTS 269
            L ++       +    L  L +L EL +  +             +    +L++L +L S
Sbjct: 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDI--------ETSDCCNLQLRNLSHLQS 380

Query: 270 LEVHVRDVSSLPRGLL--LEKLER 291
           L +   +  SL         +LE 
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLEL 404

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 10/118 (8%)

Query: 131 TIPDNFFKSMIEVRVVNL-------TDMILPSSLGLLSNLRTLSLCSCGLPDIS--FVGY 181
              +  F  +  ++ +NL        ++   +SL  L  L  L L  C L  I       
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498

Query: 182 LKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIG 239
           LK +  + L  + +    +E         L+L     + +I P++L  LS    + + 
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASN-HISIILPSLLPILSQQRTINLR 555

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.2 bits (149), Expect = 9e-11
 Identities = 33/220 (15%), Positives = 63/220 (28%), Gaps = 27/220 (12%)

Query: 131 TIPDNFFKSMIEVRVVNLTD----MILPSSLGLLSNLRTLSLCSC---GLPDISFVGYLK 183
            +  +  +     + + L +    M+     G  S ++ L L       +          
Sbjct: 113 RVSCSRGQGK---KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 184 KLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESF 243
            LE L L+ + I  +  +V     LK LDL     L  + P      + +  + +     
Sbjct: 170 TLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSN-KLAFMGPEF-QSAAGVTWISLRNNKL 226

Query: 244 VDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRK 303
           V  E+            L+   NL   ++               K +R     ++   + 
Sbjct: 227 VLIEKA-----------LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275

Query: 304 TG---IWCRQFRVELNNKICLKDSLIVQLQRIEDLELSEL 340
           TG     C    +      C +D       R+  L     
Sbjct: 276 TGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 35/273 (12%), Positives = 73/273 (26%), Gaps = 66/273 (24%)

Query: 131 TIPDNFFKSMIEVRVVNLTD----MILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLE 186
               +  +S   V+ ++L+      I  + L   + L  L+L S  L +   +  L  L 
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLR 83

Query: 187 ILCLRGSDIVKLP-----------------VEVGELTWLKLLDLRDCCFLKVIPPNILSK 229
            L L  + + +L                  V        K + L +   + ++       
Sbjct: 84  TLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK-ITMLRDLDEGC 142

Query: 230 LSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKL 289
            S ++ L +                    E       L  L +    +  +   ++  KL
Sbjct: 143 RSRVQYLDLKLNEIDTVNFA---------ELAASSDTLEHLNLQYNFIYDVKGQVVFAKL 193

Query: 290 ERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFR 349
           +   +                     +NK+            +  + L            
Sbjct: 194 KTLDLS--------------------SNKLAFMGPEFQSAAGVTWISLR----------N 223

Query: 350 NELVKV-----GSSHLKRLRLEGSDLALNPAES 377
           N+LV +      S +L+   L G+         
Sbjct: 224 NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD 256

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 39/205 (19%), Positives = 71/205 (34%), Gaps = 40/205 (19%)

Query: 172 GLPDISFVGYLKKLEILCLRGSDIVKLPVEVGE-LTWLKLLDLRDCCFLKVIPPNILSKL 230
            + +I       + +I  +  S + +    + +    +K LDL     L  I    L+  
Sbjct: 1   AIHEIK--QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPF 57

Query: 231 SHLEELYIGRESFVDWEEEVEGVKN--ASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEK 288
           + LE L +                N      +L+ L  L +L+++   V  L  G  +E 
Sbjct: 58  TKLELLNLSS--------------NVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIET 103

Query: 289 LERYSIYIRRYFSRKTGIWCRQFR--VEL---NNKI-CLKDSLIVQLQRIEDLELS--EL 340
           L   +  I R       + C + +    +   NNKI  L+D       R++ L+L   E+
Sbjct: 104 LHAANNNISR-------VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

Query: 341 QEQDVDYFRNELVKVGSSHLKRLRL 365
              +               L+ L L
Sbjct: 157 DTVNFAELAASS-----DTLEHLNL 176

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.8 bits (151), Expect = 2e-10
 Identities = 27/139 (19%), Positives = 45/139 (32%), Gaps = 18/139 (12%)

Query: 143 VRVVNLTDMIL-------PSSLGLLSNLRTLSLCSCGLP-DISFVGYLKKLEILCLRGSD 194
           V  ++L+   L        SSL  L+ L +L L +  +   +S       L  L L  + 
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111

Query: 195 IV-KLP--VEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVE 251
           +   +     +G  + LK L++           +   KL+ LE L +   S         
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI-------S 164

Query: 252 GVKNASLEELKHLPNLTSL 270
           G              L  L
Sbjct: 165 GANVVGWVLSDGCGELKHL 183

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.5 bits (137), Expect = 8e-09
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 8/92 (8%)

Query: 153 LPSSLGLLSNLRTLSLCSCGL----PDISFVGYLKKLEILCLRGSDIV-KLPVEVGELTW 207
           +P     L +L+ LSL         PD    G    L  L L G+     +P   G  + 
Sbjct: 263 IPPLP--LKSLQYLSLAENKFTGEIPD-FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319

Query: 208 LKLLDLRDCCFLKVIPPNILSKLSHLEELYIG 239
           L+ L L    F   +P + L K+  L+ L + 
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.9 bits (120), Expect = 9e-07
 Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 22/132 (16%)

Query: 147 NLTDMILP-SSLGLLSNLRTLSLCSCGL---PDISFVGYLKKLEILCLRGSDIV-KLPVE 201
           +L+  +   +SLG  S L+ L++ S  L     +S    L  LE+L L  + I     V 
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170

Query: 202 V---GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASL 258
                    LK L +        +    +S+  +LE L +   +F           +  +
Sbjct: 171 WVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNF-----------STGI 216

Query: 259 EELKHLPNLTSL 270
             L     L  L
Sbjct: 217 PFLGDCSALQHL 228

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 7e-05
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 9/98 (9%)

Query: 147 NLTDMILPSSLGLLSNLRTLSLCSCGL----PDISFVGYLKKLEILCLRGSDIV-KLPVE 201
            L+  I PSSLG LS LR L L    L    P    + Y+K LE L L  +D+  ++P  
Sbjct: 429 YLSGTI-PSSLGSLSKLRDLKLWLNMLEGEIP--QELMYVKTLETLILDFNDLTGEIPSG 485

Query: 202 VGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIG 239
           +   T L  + L +      IP  I  +L +L  L + 
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWI-GRLENLAILKLS 522

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 13/121 (10%)

Query: 131 TIPDNFFKSMIEVRVV-----NLTDMILPSSLG-LLSNLRTLSLCSCGL----PDISFVG 180
            +P +    M  ++V+       +  + P SL  L ++L TL L S              
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGEL-PESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391

Query: 181 YLKKLEILCLRGSDIV-KLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIG 239
               L+ L L+ +    K+P  +   + L  L L        IP + L  LS L +L + 
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLW 450

Query: 240 R 240
            
Sbjct: 451 L 451

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 9/98 (9%)

Query: 147 NLTDMILPSSLGLLSNLRTLSLCSCGL----PDISFVGYLKKLEILCLRGSDIV-KLPVE 201
             T  I P +L   S L +L L    L    P  S +G L KL  L L  + +  ++P E
Sbjct: 405 GFTGKI-PPTLSNCSELVSLHLSFNYLSGTIP--SSLGSLSKLRDLKLWLNMLEGEIPQE 461

Query: 202 VGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIG 239
           +  +  L+ L L        IP   LS  ++L  + + 
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLS 498

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 50/261 (19%), Positives = 99/261 (37%), Gaps = 29/261 (11%)

Query: 131 TIPDNFFKSMIEVRVVNLTD----MILPSSLGLLSNLRTLSLCSC---GLPDISFVGYLK 183
            +    F S  E++V++L+      I   +   LS+L TL L       L   +F G L 
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LS 100

Query: 184 KLEILCLRGSDIVKL-PVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRES 242
            L+ L    +++  L    +G L  LK L++          P   S L++LE L +    
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 243 FVDWEEEVEGVKNASLEELKHLPNL-TSLEVHVRDVSSLPRGLL----LEKLERYSIYIR 297
                   + +    L  L  +P L  SL++ +  ++ +  G      L KL   + +  
Sbjct: 161 I-------QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDS 213

Query: 298 RYFSRKTGIWCRQFRV------ELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNE 351
               +          V      E  N+  L+      L+ + +L + E +   +DY+ ++
Sbjct: 214 LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD 273

Query: 352 LVKV--GSSHLKRLRLEGSDL 370
           ++ +    +++    L    +
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTI 294

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 26/164 (15%), Positives = 55/164 (33%), Gaps = 13/164 (7%)

Query: 82  DGSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMI 141
               +K    +     K       ++ P LE L +   G       S             
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG------LSFKGCCSQSDFGTT 373

Query: 142 EVRVVNLTD---MILPSSLGLLSNLRTLSLCSC---GLPDISFVGYLKKLEILCLRGSDI 195
            ++ ++L+    + + S+   L  L  L         + + S    L+ L  L +  +  
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 196 VKLPVEV-GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYI 238
                 +   L+ L++L +    F +   P+I ++L +L  L +
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 7/97 (7%)

Query: 147 NLTDMILPSSLGLLSNLRTLSLCSC---GLPDISFVGYLKKLEILCLRGSDIVK--LPVE 201
           NL  M   S    L NL  L +         +  F G L  LE+L + G+   +  LP  
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPDI 465

Query: 202 VGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYI 238
             EL  L  LDL  C  L+ + P   + LS L+ L +
Sbjct: 466 FTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNM 501

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 5/112 (4%)

Query: 131 TIPDNFFKSMIEVRVVNLTDMILPSSLGLLSNLRTLSLCSCGLPDISFV----GYLKKLE 186
             P    KS+  +   +       S + L  +L  L L   GL               L+
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 187 ILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYI 238
            L L  + ++ +      L  L+ LD +     ++   ++   L +L  L I
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 16/114 (14%)

Query: 147 NLTDMILPSSLGLLSNLRTLSLCSC---GLPDISFVGYLKKLEILCLRGSDIVKLPVEV- 202
           +  +  LP     L NL  L L  C    L   +F   L  L++L +  ++   L     
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMSHNNFFSLDTFPY 514

Query: 203 GELTWLKLLDLRDCCFLKVIPPNILSKL-SHLEELYIGR---------ESFVDW 246
             L  L++LD      +       L    S L  L + +         +SF+ W
Sbjct: 515 KCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW 567

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.3 bits (144), Expect = 4e-10
 Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 19/141 (13%)

Query: 154 PSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDL 213
             +   L  + TLS    G+  I  V YL  L  L L+ + I  L   +  LT +  L+L
Sbjct: 34  TVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA-PLKNLTKITELEL 92

Query: 214 RDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKN-----------ASLEELK 262
                LK +    ++ L  ++ L +      D    + G+ N            ++  L 
Sbjct: 93  SG-NPLKNVSA--IAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNISPLA 148

Query: 263 HLPNLTSLEV---HVRDVSSL 280
            L NL  L +    V D++ L
Sbjct: 149 GLTNLQYLSIGNAQVSDLTPL 169

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 22/137 (16%)

Query: 147 NLTDMILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELT 206
            L ++   S++  L +++TL L S  + D++ +  L  L++L L  + I  +   +  LT
Sbjct: 96  PLKNV---SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS-PLAGLT 151

Query: 207 WLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPN 266
            L+ L + +   +  + P  L+ LS L  L              +  K + +  L  LPN
Sbjct: 152 NLQYLSIGNAQ-VSDLTP--LANLSKLTTLKA------------DDNKISDISPLASLPN 196

Query: 267 LTSLEV---HVRDVSSL 280
           L  + +    + DVS L
Sbjct: 197 LIEVHLKNNQISDVSPL 213

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 155 SSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLR 214
           S L  L+NL+ LS+ +  + D++ +  L KL  L    + I  +   +  L  L  + L+
Sbjct: 145 SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLK 203

Query: 215 DCCFLKVIPPNILSKLSHLEELYI 238
           +   +  + P  L+  S+L  + +
Sbjct: 204 N-NQISDVSP--LANTSNLFIVTL 224

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.1 bits (145), Expect = 4e-10
 Identities = 30/148 (20%), Positives = 57/148 (38%), Gaps = 26/148 (17%)

Query: 147 NLTDMILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELT 206
           ++TD     +   L+++  +   +  +  +  + YL  +  L L G+ +  +   +  L 
Sbjct: 32  SVTDA---VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK-PLTNLK 87

Query: 207 WLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNA--SLEELKHL 264
            L  L L +   +K +    L  L  L+ L +                N    +  L HL
Sbjct: 88  NLGWLFLDENK-IKDLSS--LKDLKKLKSLSLE--------------HNGISDINGLVHL 130

Query: 265 PNLTSLEVH---VRDVSSLPRGLLLEKL 289
           P L SL +    + D++ L R   L+ L
Sbjct: 131 PQLESLYLGNNKITDITVLSRLTKLDTL 158

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.0 bits (142), Expect = 1e-09
 Identities = 29/133 (21%), Positives = 46/133 (34%), Gaps = 19/133 (14%)

Query: 160 LSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFL 219
            +     +L    + D      L  ++ +    SDI  +   +  L  +  L L     L
Sbjct: 20  FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-L 77

Query: 220 KVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVH---VRD 276
             I P  L+ L +L  L++               K   L  LK L  L SL +    + D
Sbjct: 78  TDIKP--LTNLKNLGWLFLDE------------NKIKDLSSLKDLKKLKSLSLEHNGISD 123

Query: 277 VSSLPRGLLLEKL 289
           ++ L     LE L
Sbjct: 124 INGLVHLPQLESL 136

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 55.5 bits (133), Expect = 1e-08
 Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 14/124 (11%)

Query: 147 NLTDMILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELT 206
            ++D+   + L  L  L +L L +  + DI+ +  L KL+ L L  + I  +   +  LT
Sbjct: 120 GISDI---NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLT 175

Query: 207 WLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPN 266
            L+ L L     +  +    L+ L +L+ L +  +  ++               L     
Sbjct: 176 KLQNLYLSKNH-ISDLRA--LAGLKNLDVLELFSQECLNKPIN-------HQSNLVVPNT 225

Query: 267 LTSL 270
           + + 
Sbjct: 226 VKNT 229

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.4 bits (112), Expect = 4e-06
 Identities = 37/209 (17%), Positives = 71/209 (33%), Gaps = 51/209 (24%)

Query: 163 LRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVI 222
           +      S  +  I       +     L+   +    V   EL  +  +   +   +K +
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANN-SDIKSV 58

Query: 223 PPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEV---HVRDVSS 279
               +  L ++ +L++             G K   ++ L +L NL  L +    ++D+SS
Sbjct: 59  QG--IQYLPNVTKLFLN------------GNKLTDIKPLTNLKNLGWLFLDENKIKDLSS 104

Query: 280 LPRGLLLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKD-SLIVQLQRIEDLELS 338
           L     L+KL+  S+                     +N I   D + +V L ++E L L 
Sbjct: 105 LKD---LKKLKSLSLE--------------------HNGI--SDINGLVHLPQLESLYLG 139

Query: 339 ELQEQDVDYFRNELVKVGSSHLKRLRLEG 367
             +  D+            + L  L LE 
Sbjct: 140 NNKITDITVLSR------LTKLDTLSLED 162

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.2 bits (145), Expect = 5e-10
 Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 12/123 (9%)

Query: 151 MILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKL 210
           +         +++R L L    L  +  +  L  +  L L  + +  LP  +  L  L++
Sbjct: 431 LENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEV 490

Query: 211 LDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSL 270
           L   D   L+ +    ++ L  L+EL +                   ++ L   P L  L
Sbjct: 491 LQASD-NALENVDG--VANLPRLQELLLCNNRLQQSAA---------IQPLVSCPRLVLL 538

Query: 271 EVH 273
            + 
Sbjct: 539 NLQ 541

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.1 bits (144), Expect = 6e-10
 Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 15/120 (12%)

Query: 154 PSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDL 213
            S+L  L+NLR L L    + DIS +  L K+  L L  +  +     +  +T L  L +
Sbjct: 103 ISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTV 162

Query: 214 RDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVH 273
            +   +K + P  ++ L+ L  L +      D            +  L  L +L     +
Sbjct: 163 TE-SKVKDVTP--IANLTDLYSLSLNYNQIED------------ISPLASLTSLHYFTAY 207

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.7 bits (143), Expect = 9e-10
 Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 16/127 (12%)

Query: 155 SSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLR 214
                L+      L    + D+     L+ +  L + G  +  +   +  LT L+ L+L 
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLN 74

Query: 215 DCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHV 274
               +  I P  LS L  L  LYIG     D            +  L++L NL  L ++ 
Sbjct: 75  G-NQITDISP--LSNLVKLTNLYIGTNKITD------------ISALQNLTNLRELYLNE 119

Query: 275 RDVSSLP 281
            ++S + 
Sbjct: 120 DNISDIS 126

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.6 bits (135), Expect = 9e-09
 Identities = 29/121 (23%), Positives = 45/121 (37%), Gaps = 20/121 (16%)

Query: 155 SSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLR 214
           + +  L++L +LSL    + DIS +  L  L       + I  +   V  +T L  L + 
Sbjct: 171 TPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT-PVANMTRLNSLKIG 229

Query: 215 DCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNA--SLEELKHLPNLTSLEV 272
           +     + P   L+ LS L  L IG               N    +  +K L  L  L V
Sbjct: 230 NNKITDLSP---LANLSQLTWLEIG--------------TNQISDINAVKDLTKLKMLNV 272

Query: 273 H 273
            
Sbjct: 273 G 273

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.2 bits (121), Expect = 4e-07
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 154 PSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEV-GELTWLKLLD 212
            +++  L+ L+ L++ S  + DIS +  L +L  L L  + +    +EV G LT L  L 
Sbjct: 258 INAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 213 LRDCCFLKVIPPNILSKLSHLEELYI 238
           L     +  I P  L+ LS ++    
Sbjct: 318 LSQNH-ITDIRP--LASLSKMDSADF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.4 bits (111), Expect = 8e-06
 Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 16/108 (14%)

Query: 163 LRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVI 222
             TL+     +  I     L +     L+ + +  +     EL  +  L +     +  I
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAG-EKVASI 59

Query: 223 PPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSL 270
               +  L++LE L +             G +   +  L +L  LT+L
Sbjct: 60  QG--IEYLTNLEYLNLN------------GNQITDISPLSNLVKLTNL 93

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 58.6 bits (142), Expect = 8e-10
 Identities = 39/180 (21%), Positives = 67/180 (37%), Gaps = 25/180 (13%)

Query: 131 TIPDNFFKSMIEVRVVNLTD----MILPSSLGLLSNLRTLSLCSCGLPDIS---FVGYLK 183
            I ++  +  + ++ + LT      I   S   L +L  L L    L ++S   F   L 
Sbjct: 66  YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKP-LS 124

Query: 184 KLEILCLRGSDIVKLPVEV--GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE 241
            L  L L G+    L        LT L++L + +      I     + L+ LEEL I   
Sbjct: 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184

Query: 242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLL-----LEKLERYSIYI 296
               +E +           LK + N++ L +H++    L    +     +E LE     +
Sbjct: 185 DLQSYEPKS----------LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.3 bits (144), Expect = 9e-10
 Identities = 25/159 (15%), Positives = 53/159 (33%), Gaps = 13/159 (8%)

Query: 87  KHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVV 146
           K    +     K       ++ P LE L +           S              ++ +
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN------GLSFKGCCSQSDFGTTSLKYL 378

Query: 147 NLTD---MILPSSLGLLSNLRTLSLCSC---GLPDISFVGYLKKLEILCLRGSDIVKLPV 200
           +L+    + + S+   L  L  L         + + S    L+ L  L +  +       
Sbjct: 379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 201 EV-GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYI 238
            +   L+ L++L +    F +   P+I ++L +L  L +
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 37/164 (22%), Positives = 64/164 (39%), Gaps = 17/164 (10%)

Query: 131 TIPDNFFKSMIEVRVVNLTD----MILPSSLGLLSNLRTLSLCSC---GLPDISFVGYLK 183
            +    F S  E++V++L+      I   +   LS+L TL L       L   +F G L 
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LS 100

Query: 184 KLEILCLRGSDIVKLPVEV-GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRES 242
            L+ L    +++  L     G L  LK L++          P   S L++LE L +    
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 243 FVDWEEEVEGVKNASLEELKHLPNLT-SLEVHVRDVSSLPRGLL 285
                   + +    L  L  +P L  SL++ +  ++ +  G  
Sbjct: 161 I-------QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 20/115 (17%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 133 PDNFFKSMIEVRVVNLTD----MILPSSLGLLSNLRTLSLCSCGLPDI---SFVGYLKKL 185
             + F S+  +  ++++     +        LS+L  L +      +         L+ L
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 186 EILCLRGSDIVKLPVEV-GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIG 239
             L L    + +L       L+ L++L++     LK +P  I  +L+ L+++++ 
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLH 526

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 24/159 (15%), Positives = 50/159 (31%), Gaps = 13/159 (8%)

Query: 84  STIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEV 143
           + + + +S  L  +    + +       + L +                P    KS+  +
Sbjct: 279 NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN--------CKFGQFPTLKLKSLKRL 330

Query: 144 RVVNLTDMILPSSLGLLSNLRTLSLCSCGLPDISFV----GYLKKLEILCLRGSDIVKLP 199
              +       S + L  +L  L L   GL               L+ L L  + ++ + 
Sbjct: 331 TFTSNKGGNAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389

Query: 200 VEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYI 238
                L  L+ LD +     ++   ++   L +L  L I
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 23/148 (15%)

Query: 131 TIPDNFFKSMIEVRVVNLTD----MILPSSLGLLSNLRTLSLCSCGLPDI---SFVGYLK 183
            +PD+   +   + V+NLT      +  ++    S L +L +    +  +        L 
Sbjct: 18  QVPDDLPTN---ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK-LP 73

Query: 184 KLEILCLRGSDIVKLPVEV-GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRES 242
            L++L L+ +++ +L  +     T L  L L     ++ I  N   K  +L  L +    
Sbjct: 74  MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNG 132

Query: 243 FVDWEEEVEGVKNASLEELKHLPNLTSL 270
                       +  L     L NL  L
Sbjct: 133 L----------SSTKLGTQVQLENLQEL 150

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 26/143 (18%), Positives = 48/143 (33%), Gaps = 14/143 (9%)

Query: 131 TIPDNFFKSMIEVRVVNLTD----MILPSSLGLLSNLRTLSLCSC---GLPDISFVGYLK 183
            + D  F     +  ++L       I  +      NL TL L           + V  L+
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ-LE 145

Query: 184 KLEILCLRG---SDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIG- 239
            L+ L L       +    +++   + LK L+L     +K   P     +  L  L++  
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNN 204

Query: 240 -RESFVDWEEEVEGVKNASLEEL 261
            +      E+    + N S+  L
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNL 227

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 30/158 (18%)

Query: 131 TIPDNFFKSMIEVRVVNLTD------MILPSSLGLLSNLRTLSLCSC---GLPDISFVGY 181
            +  N F  +  ++ + L           PS    L NL  L L +     + D    G 
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG- 502

Query: 182 LKKLEILCLRGSDIVKLPVEV---------GELTWLKLLDLRDCCFLKVIPPNILSKLSH 232
           L+KLEIL L+ +++ +L               L+ L +L+L        IP  +   L  
Sbjct: 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFE 561

Query: 233 LEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSL 270
           L+ + +G  +       V            +  +L SL
Sbjct: 562 LKIIDLGLNNLNTLPASV----------FNNQVSLKSL 589

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 11/121 (9%)

Query: 131 TIPDNFFKSMIEVRVVNLTD----MILPSSLGLLSNLRTLSL-----CSCGLPDISFVG- 180
            I D  F+ +  +  +N+ D     I  +    L NL+ LSL         L + +FV  
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378

Query: 181 YLKKLEILCLRGSDIVKLPVEV-GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIG 239
               L IL L  + I K+  +    L  L++LDL      + +       L ++ E+Y+ 
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

Query: 240 R 240
            
Sbjct: 439 Y 439

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 17/125 (13%)

Query: 131 TIPDNFFKSMIEVRVVNLTD------------MILPSSLGLLSNLRTLSLCSCGLPDISF 178
            I D+  + + ++ +++L                    L  LS+L  L+L S G  +I  
Sbjct: 494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553

Query: 179 --VGYLKKLEILCLRGSDIVKLPVEV-GELTWLKLLDLRDCCFLKVIPPNILSK-LSHLE 234
                L +L+I+ L  +++  LP  V      LK L+L+    +  +   +      +L 
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK-NLITSVEKKVFGPAFRNLT 612

Query: 235 ELYIG 239
           EL + 
Sbjct: 613 ELDMR 617

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 32/152 (21%), Positives = 56/152 (36%), Gaps = 29/152 (19%)

Query: 131 TIPDNFFKSMIEVRVVNLTD----MILPSSLGLLSNLRTLSLCSCGLPDI---SFVGYLK 183
            +PD+   S    + ++L+     ++   S    S L+ L L  C +  I   ++ G L 
Sbjct: 25  KVPDDIPSS---TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG-LH 80

Query: 184 KLEILCLRGSDIVKLPVEV-GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRES 242
            L  L L G+ I          LT L+ L   +   L  +    + +L  L++L +    
Sbjct: 81  HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE-TKLASLESFPIGQLITLKKLNVAH-- 137

Query: 243 FVDWEEEVEGVKN--ASLEELKHLPNLTSLEV 272
                       N   S +   +  NLT+L  
Sbjct: 138 ------------NFIHSCKLPAYFSNLTNLVH 157

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 12/149 (8%)

Query: 131 TIPDNFFKSMIEVRVVNL-----TDMILPSSLGLLSNLRTLSLCSCGLPDIS------FV 179
           ++       +I ++ +N+         LP+    L+NL  + L    +  I+        
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177

Query: 180 GYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIG 239
              +    L +  + I  +  +  +   L  L LR       I    L  L+ L    + 
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237

Query: 240 RESFVDWEEEVEGVKNASLEELKHLPNLT 268
              F D E  +E  + + +E L  +    
Sbjct: 238 LGEFKD-ERNLEIFEPSIMEGLCDVTIDE 265

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.1 bits (128), Expect = 8e-08
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 4/91 (4%)

Query: 152 ILPSSLGLLSNLRTLSLCS---CGLPDISFVGYLKKLEILCLRGSDIVKLPVEV-GELTW 207
           I+ ++   L  L+ L         + + S    L+KL  L +  ++       +   LT 
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 208 LKLLDLRDCCFLKVIPPNILSKLSHLEELYI 238
           L  L +    F      N+ +  ++L  L +
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 11/118 (9%)

Query: 131 TIPDNFFKSMIEVRVVNL-----TDMILPSSLGLLSNLRTLSLCSCGLPDIS---FVGYL 182
              D  F  +  +  + +      D  L +     +NL  L L  C L  IS   F   L
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF-DTL 496

Query: 183 KKLEILCLRGSDIVKLPVEV-GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIG 239
            +L++L +  ++++ L      +L  L  LD      ++     +      L    + 
Sbjct: 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF-NRIETSKGILQHFPKSLAFFNLT 553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 19/115 (16%), Positives = 42/115 (36%), Gaps = 9/115 (7%)

Query: 132 IPDNFFKSMIEVRVVNLTD----MILPSSLGLLSNLRTLSLCSCGLPDIS---FVGYLKK 184
              + F S+ ++  ++++     +        L++L TL +      D +          
Sbjct: 415 TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474

Query: 185 LEILCLRGSDIVKLPVEV-GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYI 238
           L  L L    + ++   V   L  L+LL++     L  +  +  ++L  L  L  
Sbjct: 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH-NNLLFLDSSHYNQLYSLSTLDC 528

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 12/118 (10%)

Query: 131 TIPDNFFKSMIEVRVVNL-----TDMILPSSLGLLSNLRTLSLCSC---GLPDISFVGYL 182
            I    F  + E++ ++        +   S+   L  L  L +         D  F+G L
Sbjct: 389 IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG-L 447

Query: 183 KKLEILCLRG-SDIVKLPVEV-GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYI 238
             L  L + G S        V    T L  LDL   C L+ I   +   L  L+ L +
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK-CQLEQISWGVFDTLHRLQLLNM 504

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.7 bits (137), Expect = 7e-09
 Identities = 41/249 (16%), Positives = 77/249 (30%), Gaps = 27/249 (10%)

Query: 131 TIPDNFFKSMIEVRVVNL-----TDMILPSSLGLLSNLRTLSLCSCG---LPDISFVGYL 182
           T+  + F  + +++++ L        I   +   L NLR L L S     L   +F G L
Sbjct: 38  TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG-L 96

Query: 183 KKLEILCLRGSDIVKLPVEVG---ELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIG 239
             L  L L    +    ++ G    L  L  LDL       +       KL+ L+ +   
Sbjct: 97  FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156

Query: 240 RESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERY-SIYIRR 298
                   E         LE L     L+   +    + S       + +  + ++ +  
Sbjct: 157 SNQIFLVCEH-------ELEPL-QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEI 208

Query: 299 YFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELS--ELQEQDVDYFRNELVKVG 356
                 G          N     +   ++    I         +++ D + F      + 
Sbjct: 209 LDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG----LA 264

Query: 357 SSHLKRLRL 365
            S ++ L L
Sbjct: 265 RSSVRHLDL 273

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.6 bits (121), Expect = 5e-07
 Identities = 33/185 (17%), Positives = 65/185 (35%), Gaps = 30/185 (16%)

Query: 131 TIPDNFFKSMIEVRVVNLTD----MILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKL- 185
            +  + F  + +V  ++L      +I   +   L  L+TL L    L  I F+  +  + 
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF 387

Query: 186 ----------------EILCLRGSDIVKLPVEV--GELTWLKLLDLRDCCFLKVIPPNIL 227
                            ++ L  + +  L +      +  L++L L    F         
Sbjct: 388 LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447

Query: 228 SKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLL-- 285
           S+   LE+L++G        E          +  + L +L  L ++   ++SLP G+   
Sbjct: 448 SENPSLEQLFLGENMLQLAWET-----ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502

Query: 286 LEKLE 290
           L  L 
Sbjct: 503 LTALR 507

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 19/155 (12%)

Query: 144 RVVNLTDMILPSSLGLLSNLRTLSLCSCGLPDI---SFVGYLKKLEILCLRGSDI-VKLP 199
           R+       L     +L+    L L    +  +   SF   L++L++L L      + + 
Sbjct: 7   RIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPF-LEQLQLLELGSQYTPLTID 65

Query: 200 VEV-GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASL 258
            E    L  L++LDL     +  + P+    L HL EL +                +A L
Sbjct: 66  KEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGL----------SDAVL 114

Query: 259 EE--LKHLPNLTSLEVHVRDVSSLPRGLLLEKLER 291
           ++   ++L  LT L++    + SL       KL  
Sbjct: 115 KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS 149

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 12/118 (10%)

Query: 153 LPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLD 212
           + ++L  L   + L+L +  +  IS +  ++ L IL L  + I K+         L+ L 
Sbjct: 40  MDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELW 99

Query: 213 LRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSL 270
           +     +  +    + KL +L  LY+      +W E         +++L  L  L  L
Sbjct: 100 ISY-NQIASLSG--IEKLVNLRVLYMSNNKITNWGE---------IDKLAALDKLEDL 145

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 2/115 (1%)

Query: 157 LGLLSNLRTLSLCSCGLPDIS-FVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRD 215
           L  + NLR LSL    +  I         LE L +  + I  L   + +L  L++L + +
Sbjct: 66  LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSN 124

Query: 216 CCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSL 270
                    + L+ L  LE+L +      +  +E        +E +K LPNL  L
Sbjct: 125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 20/93 (21%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 147 NLTDMILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELT 206
           +++            +L +L++ S  L D  F     ++++L L  + I  +P +V +L 
Sbjct: 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLE 444

Query: 207 WLKLLDLRDCCFLKVIPPNILSKLSHLEELYIG 239
            L+ L++     LK +P  I  +L+ L+++++ 
Sbjct: 445 ALQELNVAS-NQLKSVPDGIFDRLTSLQKIWLH 476

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 32/186 (17%), Positives = 58/186 (31%), Gaps = 28/186 (15%)

Query: 131 TIPDNFFKSMIEVRVVNLTD----MILPSSLGLLSNLRTLSLCSCGLPDISF--VGYLKK 184
                 ++    + + N T     M+       +S    L   +  L D  F   G+L +
Sbjct: 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349

Query: 185 LEILCLRGSDIVKLPVEVG---ELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE 241
           LE L L+ + + +L        ++  L+ LD+              S    L  L +   
Sbjct: 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

Query: 242 SFVDWEEEVEGVKNASLEELK--------------HLPNLTSLEVHVRDVSSLPRGLL-- 285
              D    +       ++ L                L  L  L V    + S+P G+   
Sbjct: 410 ILTD---TIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDR 466

Query: 286 LEKLER 291
           L  L++
Sbjct: 467 LTSLQK 472

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 39/224 (17%), Positives = 71/224 (31%), Gaps = 25/224 (11%)

Query: 152 ILPSSLGLLSNLRTLSLCSC---GLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWL 208
           +  S +  LS LR L +       L    F    ++LE L L  + +VK+         L
Sbjct: 36  LWTSDILSLSKLRILIISHNRIQYLDISVFKF-NQELEYLDLSHNKLVKISC--HPTVNL 92

Query: 209 KLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLT 268
           K LDL    F  +        +S L+ L +               + +S+  + HL    
Sbjct: 93  KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL----------EKSSVLPIAHLNISK 142

Query: 269 SLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQ 328
            L V             L+     S++I            ++F   L+    +K    ++
Sbjct: 143 VLLVLGETYGEKEDPEGLQDFNTESLHIVF-------PTNKEFHFILDV--SVKTVANLE 193

Query: 329 LQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLAL 372
           L  I+ +         +            S+L    +E +  + 
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 43/259 (16%), Positives = 100/259 (38%), Gaps = 53/259 (20%)

Query: 131 TIPDNFFKSMIEVRVVNLTD----MILPSSLGLLSNLRTLSLCSCGLPDI---SFVGYLK 183
            +P +         +++L +     I       L NL TL L +  +  I   +F   L 
Sbjct: 45  KVPKDLPPD---TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LV 100

Query: 184 KLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESF 243
           KLE L L  + + +LP ++     L+ L + +   +  +  ++ + L+ +  + +G    
Sbjct: 101 KLERLYLSKNQLKELPEKM--PKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNP- 156

Query: 244 VDWEEEVEGVKNASLEE--LKHLPNLTSLEVHVRDVSSLPRGLL--LEKLERYSIYIRR- 298
                    +K++ +E    + +  L+ + +   +++++P+GL   L +L      I + 
Sbjct: 157 ---------LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKV 207

Query: 299 ---YFSRKTGIWCRQFRVEL-NNKI-CLKDSLIVQLQRIEDLELSELQEQDVDYFRNELV 353
                     +     ++ L  N I  + +  +     + +L L+           N+LV
Sbjct: 208 DAASLKGLNNL----AKLGLSFNSISAVDNGSLANTPHLRELHLN----------NNKLV 253

Query: 354 KV-----GSSHLKRLRLEG 367
           KV        +++ + L  
Sbjct: 254 KVPGGLADHKYIQVVYLHN 272

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 30/172 (17%), Positives = 55/172 (31%), Gaps = 24/172 (13%)

Query: 131 TIPDNFFKSMIEVRVVNLTDMILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCL 190
             PD+ F S +              S   L+ L +L   +  + D++ +  L  L  L  
Sbjct: 14  WFPDDNFASEVAAA--FEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLIC 71

Query: 191 RGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEV 250
             ++I  L   + + T L  L       L  +    ++ L+ L  L            ++
Sbjct: 72  TSNNITTLD--LSQNTNLTYLACDS-NKLTNLD---VTPLTKLTYLNCDTNKL----TKL 121

Query: 251 EGVKNASLEEL------------KHLPNLTSLEVHVRDVSSLPRGLLLEKLE 290
           +  +N  L  L             H   LT L+ H+    +        +L 
Sbjct: 122 DVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLT 173

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 20/166 (12%), Positives = 49/166 (29%), Gaps = 24/166 (14%)

Query: 131 TIPDNFFKSMIEVRVVN--LTDMILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEIL 188
            +  +    +  +  +   L ++     L   + L       C       V +  +L +L
Sbjct: 247 ELDVSTLSKLTTLHCIQTDLLEI----DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLL 302

Query: 189 CLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEE 248
             + + I +L   + +   L  L L +   L  +    +S  + L+ L            
Sbjct: 303 DCQAAGITELD--LSQNPKLVYLYLNNTE-LTELD---VSHNTKLKSLS----------- 345

Query: 249 EVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSI 294
                       +  +P L +         ++P+  L       ++
Sbjct: 346 -CVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAV 390

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 23/147 (15%), Positives = 42/147 (28%), Gaps = 22/147 (14%)

Query: 156 SLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRD 215
            +  L+ L         L ++     L KL  L    +D++++   +   T L       
Sbjct: 228 DVTPLTQLTYFDCSVNPLTELDV-STLSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEG 284

Query: 216 CCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEEL------------KH 263
           C   + I    ++  + L  L            E++  +N  L  L             H
Sbjct: 285 C---RKIKELDVTHNTQLYLLDCQAAGI----TELDLSQNPKLVYLYLNNTELTELDVSH 337

Query: 264 LPNLTSLEVHVRDVSSLPRGLLLEKLE 290
              L SL      +        +  L 
Sbjct: 338 NTKLKSLSCVNAHIQDFSSVGKIPALN 364

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 27/173 (15%), Positives = 55/173 (31%), Gaps = 19/173 (10%)

Query: 128 SPVTIPDNFFKSMIEVRVVNLTD---MILPSSLGLLSNLRTLSLCSCGL---PDISFVGY 181
           S              ++ ++L+    + + S+   L  L  L      L    + S    
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124

Query: 182 LKKLEILCLRGSDIVKLPVEV-GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGR 240
           L+ L  L +  +        +   L+ L++L +    F +   P+I ++L +L  L + +
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 241 ESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLL--LEKLER 291
                                  L +L  L +   +  SL       L  L+ 
Sbjct: 185 CQLEQLSPTA----------FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 28/173 (16%), Positives = 51/173 (29%), Gaps = 26/173 (15%)

Query: 131 TIPDNFFKSMIEVRVVNLT----DMILPSSLGLLSNLRTLSLCSCGLPDIS-----FVGY 181
           ++P     S      + L       +       L+ L  LSL S GL           G 
Sbjct: 21  SVPTGIPSS---ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG- 76

Query: 182 LKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE 241
              L+ L L  + ++ +      L  L+ LD +     ++   ++   L +L  L I   
Sbjct: 77  TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136

Query: 242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHV-RDVSSLPRGLL--LEKLER 291
                   +             L +L  L++       +    +   L  L  
Sbjct: 137 HTRVAFNGI----------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 23/137 (16%)

Query: 147 NLTDMILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELT 206
           N+  +   + +   +NL+ L L    + D+S +  L KLE L +  + +  L        
Sbjct: 52  NIQSL---AGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNL--NGIPSA 106

Query: 207 WLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPN 266
            L  L L +           L  L +LE L I                   +  L  L  
Sbjct: 107 CLSRLFLDNNELRDTDS---LIHLKNLEILSIRNNKLKS------------IVMLGFLSK 151

Query: 267 LTSLEV---HVRDVSSL 280
           L  L++    + +   L
Sbjct: 152 LEVLDLHGNEITNTGGL 168

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 34/151 (22%), Positives = 54/151 (35%), Gaps = 24/151 (15%)

Query: 155 SSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLR 214
                L+N    +L    + D+     L  ++      S+I  L   +   T LK L L 
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLS 71

Query: 215 DCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEEL------------- 261
               +  + P  L  L+ LEEL + R    +    + G+ +A L  L             
Sbjct: 72  HNQ-ISDLSP--LKDLTKLEELSVNRNRLKN----LNGIPSACLSRLFLDNNELRDTDSL 124

Query: 262 KHLPNLTSLEVH---VRDVSSLPRGLLLEKL 289
            HL NL  L +    ++ +  L     LE L
Sbjct: 125 IHLKNLEILSIRNNKLKSIVMLGFLSKLEVL 155

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 20/118 (16%), Positives = 45/118 (38%), Gaps = 20/118 (16%)

Query: 175 DISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLE 234
            +     L       L    +  L V   EL+ ++  +  D   ++ +    +   ++L+
Sbjct: 11  QVFPDPGLANAVKQNLGKQSVTDL-VSQKELSGVQNFNG-DNSNIQSLAG--MQFFTNLK 66

Query: 235 ELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVH---VRDVSSLPRGLLLEKL 289
           EL++               + + L  LK L  L  L V+   +++++ +P    L +L
Sbjct: 67  ELHLS------------HNQISDLSPLKDLTKLEELSVNRNRLKNLNGIP-SACLSRL 111

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 4/85 (4%)

Query: 155 SSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGE-LTWLKLLDL 213
             LG LS L  L L    + +   +  LKK+  + L G   V  PV+    L     +  
Sbjct: 144 VMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKD 203

Query: 214 RDCCFLKVIPPNILSKLSHLEELYI 238
            D    + I P  +S      +  +
Sbjct: 204 PD---GRWISPYYISNGGSYVDGCV 225

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 40/151 (26%), Positives = 59/151 (39%), Gaps = 21/151 (13%)

Query: 147 NLTDMILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELT 206
           NL      ++L   + L  L+L    L  +   G L  L  L L  + +  LP+    L 
Sbjct: 41  NLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP 100

Query: 207 WLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNA--SLEE--LK 262
            L +LD+     L  +P   L  L  L+ELY+                N   +L    L 
Sbjct: 101 ALTVLDV-SFNRLTSLPLGALRGLGELQELYLKG--------------NELKTLPPGLLT 145

Query: 263 HLPNLTSLEVHVRDVSSLPRGLL--LEKLER 291
             P L  L +   +++ LP GLL  LE L+ 
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDT 176

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 25/163 (15%)

Query: 131 TIPDNFFKSMIEVRVVNLTDMILPS--SLGLLSNLRTLSLCSCGLPDISFVG-YLKKLEI 187
           T           +  +NL    L      G L  L TL L    L  +  +G  L  L +
Sbjct: 45  TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV 104

Query: 188 LCLRGSDIVKLPVEV-GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDW 246
           L +  + +  LP+     L  L+ L L+    LK +PP +L+    LE+L +        
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLA------- 156

Query: 247 EEEVEGVKNASLEEL-----KHLPNLTSLEVHVRDVSSLPRGL 284
                   N +L EL       L NL +L +    + ++P+G 
Sbjct: 157 --------NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.4 bits (128), Expect = 6e-08
 Identities = 44/252 (17%), Positives = 96/252 (38%), Gaps = 23/252 (9%)

Query: 131 TIPDNFFKSMIEVRVVN--LTDMILPSSLGLLSNLRTLSLCSC---GLPDISFVGYLKKL 185
            +       +  +++ +  LTD    + L     L  + L       +    FV  +++L
Sbjct: 225 VVRGPVNVELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYNELEKIMYHPFVK-MQRL 280

Query: 186 EILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVD 245
           E L +  + +V L +    +  LK+LDL     L  +  N       LE LY+   S V 
Sbjct: 281 ERLYISNNRLVALNLYGQPIPTLKVLDLSH-NHLLHVERNQPQ-FDRLENLYLDHNSIVT 338

Query: 246 WEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTG 305
                  +K ++   LK+L  L+  +     + +L R +    ++    + +  +  + G
Sbjct: 339 -------LKLSTHHTLKNL-TLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHG 390

Query: 306 IWCRQFRVELNNKICL---KDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKR 362
           + C++      +++       S++ ++QR +    +      V    + + + G   L+ 
Sbjct: 391 LCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQG 450

Query: 363 L-RLEGSDLALN 373
             +LE     L 
Sbjct: 451 NEQLEAEVNELR 462

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 29/183 (15%), Positives = 59/183 (32%), Gaps = 28/183 (15%)

Query: 132 IPDNFFKSMIEVRVVNLTDMIL---------PSSLGLLSNLRTLSLCSCGL---PDISFV 179
              + +    ++ + N   +            + L     +  L+L    +      +F 
Sbjct: 37  QTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA 96

Query: 180 GYLKKLEILCLRGSDIVKLPVEV-GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYI 238
                ++ L +  + I  LP  V   +  L +L L     L  +P  I      L  L +
Sbjct: 97  Y-AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER-NDLSSLPRGIFHNTPKLTTLSM 154

Query: 239 GRESFVDWEEEVEGVKNASLEEL------------KHLPNLTSLEVHVRDVSSLPRGLLL 286
              +    E++       SL+ L              +P+L    V    +S+L   + +
Sbjct: 155 SNNNLERIEDDT-FQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV 213

Query: 287 EKL 289
           E+L
Sbjct: 214 EEL 216

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 41/216 (18%), Positives = 76/216 (35%), Gaps = 47/216 (21%)

Query: 153 LPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEV-GELTWLKLL 211
           L            + + +  +        L   +I+  + S + KLP  +      ++LL
Sbjct: 23  LQYDCVFYDV--HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 80

Query: 212 DLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLE 271
           +L D   ++ I     +    +++LY+G  +       V           +++P LT L 
Sbjct: 81  NLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV----------FQNVPLLTVLV 129

Query: 272 VHVRDVSSLPRGLL--LEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKIC-LKDSLIVQ 328
           +   D+SSLPRG+     KL   S+                     NN +  ++D     
Sbjct: 130 LERNDLSSLPRGIFHNTPKLTTLSMS--------------------NNNLERIEDDTFQA 169

Query: 329 LQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLR 364
              +++L+LS           N L  V  S +  L 
Sbjct: 170 TTSLQNLQLS----------SNRLTHVDLSLIPSLF 195

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 21/127 (16%)

Query: 131 TIPDNFFKSMIEVRVVNLTD-MILPSSLGLLSNLRTLSLCSCGLPDISFVGYLK------ 183
            I D+ F++   ++ + L+   +    L L+ +L   ++    L  ++    ++      
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 220

Query: 184 ------------KLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLS 231
                       +L IL L+ +++      +     L  +DL     L+ I  +   K+ 
Sbjct: 221 NSINVVRGPVNVELTILKLQHNNLTDTAWLLN-YPGLVEVDLSY-NELEKIMYHPFVKMQ 278

Query: 232 HLEELYI 238
            LE LYI
Sbjct: 279 RLERLYI 285

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.9 bits (127), Expect = 8e-08
 Identities = 26/255 (10%), Positives = 64/255 (25%), Gaps = 41/255 (16%)

Query: 131 TIPDNFFKSMIEVRVVNL-----TDMILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKL 185
            + D        V+ ++L       +           L  L+L    + D+       KL
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKL 193

Query: 186 EILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVD 245
           + L L  + +  +  E      +  + LR+   L +I   +     +LE   +       
Sbjct: 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKAL-RFSQNLEHFDL---RGNG 248

Query: 246 WEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTG 305
           +         +  + ++ +   T  ++  ++        L                    
Sbjct: 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH------------------ 290

Query: 306 IWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSH---LKR 362
                         C +D       R+  L+  E           E ++    +    + 
Sbjct: 291 ----------YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQRE 340

Query: 363 LRLEGSDLALNPAES 377
           +            + 
Sbjct: 341 IDALKEQYRTVIDQV 355

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 25/182 (13%), Positives = 53/182 (29%), Gaps = 31/182 (17%)

Query: 131 TIPDNFFKSMIEVRVVNLTD----MILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLE 186
               +  +S   V+ ++L+      I  + L   + L  L+L S  L +   +  L  L 
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLR 83

Query: 187 ILCLRGSDIVKLP-----------------VEVGELTWLKLLDLRDCCFLKVIPPNILSK 229
            L L  + + +L                  V        K + L +   + ++       
Sbjct: 84  TLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK-ITMLRDLDEGC 142

Query: 230 LSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKL 289
            S ++ L +                    E       L  L +    +  +   ++  KL
Sbjct: 143 RSRVQYLDLKLNEIDTVNFA---------ELAASSDTLEHLNLQYNFIYDVKGQVVFAKL 193

Query: 290 ER 291
           + 
Sbjct: 194 KT 195

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 22/142 (15%), Positives = 45/142 (31%), Gaps = 23/142 (16%)

Query: 153 LPSSLGLLSNLRTLSLCSCGLPDI--SFVGYLKKLEILCLRGSDIVKLPVEV-GELTWLK 209
           +       +  +   +    L     S       ++ L L G+ + ++        T L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 210 LLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTS 269
           LL+L     L       L  LS L  L +                N  ++EL   P++ +
Sbjct: 62  LLNLSS-NVLYETLD--LESLSTLRTLDLNN--------------N-YVQELLVGPSIET 103

Query: 270 LEVHVRDVSSLPRGLL--LEKL 289
           L     ++S +        + +
Sbjct: 104 LHAANNNISRVSCSRGQGKKNI 125

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.0 bits (125), Expect = 9e-08
 Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 23/126 (18%)

Query: 147 NLTDMILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELT 206
           ++TD     +   L+++  +   +  +  +  + YL  +  L L G+ +  +   +  L 
Sbjct: 35  SVTDA---VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK-PLANLK 90

Query: 207 WLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKN--ASLEELKHL 264
            L  L L +   +K +    L  L  L+ L +                N  + +  L HL
Sbjct: 91  NLGWLFLDENK-VKDLSS--LKDLKKLKSLSLE--------------HNGISDINGLVHL 133

Query: 265 PNLTSL 270
           P L SL
Sbjct: 134 PQLESL 139

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 11/117 (9%)

Query: 155 SSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLR 214
           + L  L  L +L L +  + DI+ +  L KL+ L L  + I  +   +  LT L+ L L 
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLS 186

Query: 215 DCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLE 271
               +  +    L+ L +L+ L +  +  ++               L     + + +
Sbjct: 187 KNH-ISDLRA--LAGLKNLDVLELFSQECLNKPINH-------QSNLVVPNTVKNTD 233

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 19/119 (15%)

Query: 175 DISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLE 234
            I       +     L+   +    V   EL  +  +   +   +K +    +  L ++ 
Sbjct: 16  QIFSDDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANN-SDIKSVQG--IQYLPNVT 71

Query: 235 ELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEV---HVRDVSSLPRGLLLEKLE 290
           +L++             G K   ++ L +L NL  L +    V+D+SSL     L+ L 
Sbjct: 72  KLFLN------------GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLS 118

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 35/175 (20%), Positives = 65/175 (37%), Gaps = 19/175 (10%)

Query: 131 TIPDNFFKSMIEVRVVNLTDMILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCL 190
            +P+    S+  + V N     L     L   L  L + +  L  +  +     L+I+ +
Sbjct: 105 ELPELPQ-SLKSLLVDNNNLKALSD---LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDV 160

Query: 191 RGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEV 250
             + + KLP     L ++   +      L+ +P   L  L  L  +Y    S     +  
Sbjct: 161 DNNSLKKLPDLPPSLEFIAAGN----NQLEELPE--LQNLPFLTAIYADNNSLKKLPDLP 214

Query: 251 EGVKN--------ASLEELKHLPNLTSLEVHVRDVSSLPRGL-LLEKLERYSIYI 296
             +++          L EL++LP LT++      + +LP     LE L     Y+
Sbjct: 215 LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYL 269

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 9/136 (6%)

Query: 158 GLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCC 217
            L  +L ++   +  L ++  +  L  L  +    + +  LP     L  L + D     
Sbjct: 212 DLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD 271

Query: 218 FLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEG--VKNASLEEL-KHLPNLTSLEVHV 274
                 P +   L+ L+          +    +      +  +  L    P+L  L V  
Sbjct: 272 L-----PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSN 326

Query: 275 RDVSSLPRGLL-LEKL 289
             +  LP     LE+L
Sbjct: 327 NKLIELPALPPRLERL 342

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 26/164 (15%), Positives = 45/164 (27%), Gaps = 28/164 (17%)

Query: 147 NLTDMILPSSLGLLSNLRTLSLCSCGLPDIS---------------FVGYLKKLEILCLR 191
           NLT+  +P     + +              +                    ++   L L 
Sbjct: 22  NLTE--MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELN 79

Query: 192 GSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVE 251
              +  LP     L  L       C  L  +P      L  L       ++  D    +E
Sbjct: 80  NLGLSSLPELPPHLESLVA----SCNSLTELPELP-QSLKSLLVDNNNLKALSDLPPLLE 134

Query: 252 -----GVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLL-LEKL 289
                  +   L EL++   L  ++V    +  LP     LE +
Sbjct: 135 YLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI 178

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 33/172 (19%), Positives = 62/172 (36%), Gaps = 23/172 (13%)

Query: 131 TIPDNFFKSMIEVRVVNLTD----MILPSSLGLLSNLRTLSLCS----CGLPDISFVGYL 182
            +P   F++   + ++ L       I  ++   L+ L  L L        +   +F G L
Sbjct: 46  HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG-L 104

Query: 183 KKLEILCLRGSDIVKLPVEV-GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE 241
            +L  L L    + +L   +   L  L+ L L+D   L+ +P +    L +L  L++   
Sbjct: 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN 163

Query: 242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLL--LEKLER 291
                 E             + L +L  L +H   V+ +       L +L  
Sbjct: 164 RISSVPERA----------FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 43/211 (20%), Positives = 76/211 (36%), Gaps = 39/211 (18%)

Query: 131 TIPDNFFKSMIEVRVVNLTD-----MILPSSLGLLSNLRTLSLCSCGLPDIS---FVGYL 182
            I    F  +  +  ++L+D      + P++   L  L TL L  CGL ++    F G L
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG-L 128

Query: 183 KKLEILCLRGSDIVKLPVEV-GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE 241
             L+ L L+ + +  LP +   +L  L  L L     +  +P      L  L+ L + + 
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQN 187

Query: 242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLL--LEKLERYSIYIR-- 297
                               + L  L +L +   ++S+LP   L  L  L+   + +   
Sbjct: 188 RVAHVHPHA----------FRDLGRLMTLYLFANNLSALPTEALAPLRALQY--LRLNDN 235

Query: 298 --------RYFSRKTGIWCRQFRVELNNKIC 320
                   R        W ++FR   +   C
Sbjct: 236 PWVCDCRARPLWA----WLQKFRGSSSEVPC 262

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 29/151 (19%), Positives = 52/151 (34%), Gaps = 21/151 (13%)

Query: 147 NLTDMILPSSLGLLSNLRTLSLCSCGLPDI---SFVGYLKKLEILCLRGSDIVKLPVEV- 202
            L    +P   G+ +  + + L    +  +   SF    + L IL L  + + ++     
Sbjct: 22  GLQA--VPV--GIPAASQRIFLHGNRISHVPAASFRA-CRNLTILWLHSNVLARIDAAAF 76

Query: 203 GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELK 262
             L  L+ LDL D   L+ + P     L  L  L++ R    +    +           +
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL----------FR 126

Query: 263 HLPNLTSLEVHVRDVSSLPRGLL--LEKLER 291
            L  L  L +    + +LP      L  L  
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTH 157

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 1e-07
 Identities = 56/322 (17%), Positives = 102/322 (31%), Gaps = 81/322 (25%)

Query: 87  KHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGR-----DDPWETSPVTIPDNFF---- 137
            ++TS   H     L    ++     LL  +          +           N F    
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW----NAFNLSC 266

Query: 138 KSMIEVRVVNLTDMILPSSLGLLSNLRTLSLCSCGL-PDISFVGYLKKLEIL--CLRGSD 194
           K ++  R   +TD +  ++   +S    L   S  L PD       +   +L   L    
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHIS----LDHHSMTLTPD-------EVKSLLLKYL-DCR 314

Query: 195 IVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWE----EEV 250
              LP EV                     P  LS ++  E +  G  ++ +W+    +++
Sbjct: 315 PQDLPREV-----------------LTTNPRRLSIIA--ESIRDGLATWDNWKHVNCDKL 355

Query: 251 EGVKNASLEELKHLPNLT-----SLEVHVRDVSSLPRGLL---------------LEKLE 290
             +  +SL  L+  P         L V       +P  LL               + KL 
Sbjct: 356 TTIIESSLNVLE--PAEYRKMFDRLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 291 RYSIYIRRYFSRKTGIWCRQF--RVELNNKICLKDSLIVQLQRIEDLELSELQEQDVD-Y 347
           +YS+  ++       I       +V+L N+  L  S++      +  +  +L    +D Y
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472

Query: 348 FRNELVKVGSSHLKRLRLEGSD 369
           F + +      HLK +      
Sbjct: 473 FYSHIGH----HLKNIEHPERM 490

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 38/259 (14%), Positives = 78/259 (30%), Gaps = 87/259 (33%)

Query: 185 LEILCLRGSDIVKLPVEVGELT---WLKLLDLRDCCFLKVIPPNILSKL--SHLEELYIG 239
              L  +  ++V+  VE        +L +  ++         P++++++     + LY  
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFL-MSPIKTEQ----RQPSMMTRMYIEQRDRLYND 122

Query: 240 RESFVDW----EEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRG--------LLLE 287
            + F  +     +    ++ A L EL+   N+    +          G        + L+
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQA-LLELRPAKNVL---ID---------GVLGSGKTWVALD 169

Query: 288 KLERYSIYIRRYFSRKTGI-W-----CRQFRVELN--NKICLK---------DSLIVQLQ 330
               Y +  +  F     I W     C      L    K+  +         D       
Sbjct: 170 VCLSYKVQCKMDF----KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 331 RIEDL--ELSELQEQ-----------DV------DYF----------RNELV--KVGSSH 359
           RI  +  EL  L +            +V      + F          R + V   + ++ 
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 360 LKRLRLEGSDLALNPAESK 378
              + L+   + L P E K
Sbjct: 286 TTHISLDHHSMTLTPDEVK 304

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 61/381 (16%), Positives = 116/381 (30%), Gaps = 86/381 (22%)

Query: 10  QGVNKMEAARNRVHALVRTLKASCMLLDHESEKEELFSMHDV--VRHV-AISIASTKRNV 66
              +     + R+H++   L+    LL  +  +  L  + +V   +   A +++   + +
Sbjct: 215 SRSDHSSNIKLRIHSIQAELR---RLLKSKPYENCLLVLLNVQNAKAWNAFNLSC--KIL 269

Query: 67  FTATNEQVDGCREWSDGSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWE 126
            T   +QV      +D  +    T I L      L P+  E   L L ++    +D P E
Sbjct: 270 LTTRFKQV------TDFLSAATTTHISLDHHSMTLTPD--EVKSLLLKYLDCRPQDLPRE 321

Query: 127 ---TSPVTIPDNFFKSMIEVRVVNLTDMILPSSLGLLSNL-RTLSLCSCGLPDISFVGYL 182
              T+P  +      S+I   + +               L   +      L    +    
Sbjct: 322 VLTTNPRRL------SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 183 KKLEILCLRGSDIVKLPVEVGELTWLK-----------------LLDLRDCCFLKVIPPN 225
            +L +          +P  +  L W                   L++ +       IP  
Sbjct: 376 DRLSVF----PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431

Query: 226 ILSKLSHLEEL----------YIGRESFVDWEEEVEGV------------KNASLEELKH 263
            L     LE            Y   ++F   +     +            KN    E   
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491

Query: 264 LP-----NLTSLEVHVRDVSSLPRGL-----LLEKLERYSIYIRR---YFSRKTGIWCRQ 310
           L      +   LE  +R  S+           L++L+ Y  YI      + R        
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI-LD 550

Query: 311 F--RVELNNKICLKDSLIVQL 329
           F  ++E  N IC K + ++++
Sbjct: 551 FLPKIE-ENLICSKYTDLLRI 570

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 36/185 (19%), Positives = 74/185 (40%), Gaps = 19/185 (10%)

Query: 131 TIPDNFFKSMIEVRVV--NLTDMILPSSLGLLSNLRTLSLCSC---GLPDISFVGYLKKL 185
            +       +  +++   NLTD    + L     L  + L       +    FV  +++L
Sbjct: 219 VVRGPVNVELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYNELEKIMYHPFVK-MQRL 274

Query: 186 EILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVD 245
           E L +  + +V L +    +  LK+LDL     L  +  N   +   LE LY+   S V 
Sbjct: 275 ERLYISNNRLVALNLYGQPIPTLKVLDLSH-NHLLHVERN-QPQFDRLENLYLDHNSIVT 332

Query: 246 WEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTG 305
                  +K ++   LK+L  L+  +     + +L R +    ++    + +  +  + G
Sbjct: 333 -------LKLSTHHTLKNL-TLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHG 384

Query: 306 IWCRQ 310
           + C++
Sbjct: 385 LCCKE 389

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 18/138 (13%), Positives = 48/138 (34%), Gaps = 18/138 (13%)

Query: 160 LSNLRTLSLCSCGL---PDISFVGYLKKLEILCLRGSDIVKLPVEV-GELTWLKLLDLRD 215
           L+N + ++  +  +   P        +++E+L L    I ++          ++ L +  
Sbjct: 44  LNNQKIVTFKNSTMRKLPAALLDS-FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 216 CCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVR 275
              ++ +PP++   +  L  L + R         +            + P LT+L +   
Sbjct: 103 N-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI----------FHNTPKLTTLSMSNN 151

Query: 276 DVSSLPRGLL--LEKLER 291
           ++  +          L+ 
Sbjct: 152 NLERIEDDTFQATTSLQN 169

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 31/152 (20%), Positives = 53/152 (34%), Gaps = 12/152 (7%)

Query: 131 TIPDNFFKSMIEVRVVNLTD----MILPSSLGLLSNLRTLSLCS----CGLPDISFVGYL 182
            I    F+++  ++ + +++     +             L +        +   SFVG  
Sbjct: 94  YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 153

Query: 183 KKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRES 242
            +  IL L  + I ++       T L  L+L D   L+ +P ++    S    L I R  
Sbjct: 154 FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213

Query: 243 FVDWEEEV-EGVKN---ASLEELKHLPNLTSL 270
                    E +K     S   LK LP L  L
Sbjct: 214 IHSLPSYGLENLKKLRARSTYNLKKLPTLEKL 245

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 158 GLLSNLRTLSLCSCGLPDIS---FVGYLKKLEILCLRGSDIVKLPVEVG---ELTWLKLL 211
            L  N   L      L  I    F G    LE + +  +D++++ +E      L  L  +
Sbjct: 27  DLPRNAIELRFVLTKLRVIQKGAFSG-FGDLEKIEISQNDVLEV-IEADVFSNLPKLHEI 84

Query: 212 DLRDCCFLKVIPPNILSKLSHLEELYI 238
            +     L  I P     L +L+ L I
Sbjct: 85  RIEKANNLLYINPEAFQNLPNLQYLLI 111

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 15/132 (11%), Positives = 35/132 (26%), Gaps = 26/132 (19%)

Query: 152 ILPSSLGLLSNLRTLSLCSCG----LPDISFVGYLKKLEILCLRGSDIVKLPV------- 200
                   L +L  + + +C     LP   F+  L +++++ +  +  +           
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPT--FLKALPEMQLINVACNRGISGEQLKDDWQA 297

Query: 201 --EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASL 258
             +      ++++ +             L K+  L  L                     L
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL-----------EGKL 346

Query: 259 EELKHLPNLTSL 270
                   L SL
Sbjct: 347 PAFGSEIKLASL 358

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 23/130 (17%), Positives = 39/130 (30%), Gaps = 21/130 (16%)

Query: 131 TIPDNFFKSMIEVRVVNL-----------TDMILPSSLGLLSNLRTLSLCSC---GLPDI 176
             P   F +   +  +NL           +      +      L ++ L       L D 
Sbjct: 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

Query: 177 SFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCC------FLKVIPPNILSKL 230
                L  L  + L  +   K P +    + LK   +R+         L+  P  I +  
Sbjct: 507 FRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI-TLC 565

Query: 231 SHLEELYIGR 240
             L +L IG 
Sbjct: 566 PSLTQLQIGS 575

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 13/130 (10%)

Query: 147 NLTDMILPSSLGLLSNLRTLSLCSC---GLPDISFVGYLKKLEILCLRGSDIVKLPVEV- 202
           NL    + +SL  +  L  L        G    +F G   KL  L L  + I ++P    
Sbjct: 316 NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AF-GSEIKLASLNLAYNQITEIPANFC 373

Query: 203 GELTWLKLLDLRDCCFLKVIPPNI-LSKLSHLEELYIGRESFVDWEEEVEGVKNASL-EE 260
           G    ++ L       LK IP       +S +  +             V+G     L   
Sbjct: 374 GFTEQVENLSFAH-NKLKYIPNIFDAKSVSVMSAIDFSYNEI----GSVDGKNFDPLDPT 428

Query: 261 LKHLPNLTSL 270
                N++S+
Sbjct: 429 PFKGINVSSI 438

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 19/150 (12%), Positives = 44/150 (29%), Gaps = 38/150 (25%)

Query: 153 LPSSLGLLSNLRTLSLCSCGLPDISFV---------------------GYLKKLEILCLR 191
           +  ++  L+ LR   + +      +                         LK L  + + 
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257

Query: 192 G-SDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNI-------LSKLSHLEELYIGRESF 243
              ++ KLP  +  L  ++L+++     +                    ++ +YIG  + 
Sbjct: 258 NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317

Query: 244 VDWEEEVEGVKNASLEELKHLPNLTSLEVH 273
             +  E           L+ +  L  LE  
Sbjct: 318 KTFPVE---------TSLQKMKKLGMLECL 338

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 26/200 (13%), Positives = 53/200 (26%), Gaps = 37/200 (18%)

Query: 94  LHGIKPNLLPEVLECPQLELLFIRG-GGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI 152
             G  P     + +  +LE+L +   G + +     P  I  N      +   ++     
Sbjct: 93  ASGRVP---DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTF 149

Query: 153 LPSSLGL-LSNLRTLSLCSCGL--PDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLK 209
           +        S+L    + S               K   +    ++I  +   V  LT L+
Sbjct: 150 VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLR 209

Query: 210 LLDLRDCCFLKVIP------------------PNILSKLSHLEELYIGRESFVDWEEEVE 251
              + +  F+                            L  L ++ +     +       
Sbjct: 210 QFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT------ 263

Query: 252 GVKNASL-EELKHLPNLTSL 270
                 L   LK LP +  +
Sbjct: 264 -----KLPTFLKALPEMQLI 278

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 21/144 (14%), Positives = 45/144 (31%), Gaps = 19/144 (13%)

Query: 156 SLGLLSNLRTLSLCSCGLPDI--SFVGYLKKLEILCL-----RGSDIVKLPVEVGELTWL 208
           SL     +  LSL   G        +G L +LE+L L     + ++ +  P  +      
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 209 KLLDLRDCCFLKVIPPNI-LSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNL 267
           +        + K           S L +  I  +              +  +  +     
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQ----------KSIKKSSRITLKD 185

Query: 268 TSLEVHVRDVSSLPRGLL-LEKLE 290
           T +     +++ + + ++ L KL 
Sbjct: 186 TQIGQLSNNITFVSKAVMRLTKLR 209

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 14/114 (12%)

Query: 160 LSNLRTLSLCSCGLPDISFVG---YLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDC 216
            S+++ L L +    +    G     ++LE L      +  +   + +L  LK L+L D 
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLELSDN 74

Query: 217 CFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSL 270
             +      +  K  +L  L +      D            +E LK L NL SL
Sbjct: 75  R-VSGGLEVLAEKCPNLTHLNLSGNKIKDLST---------IEPLKKLENLKSL 118

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 8/112 (7%)

Query: 160 LSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKL-PVEVGELTWLKLLDLRDCCF 218
              L  LS  + GL  I+ +  L KL+ L L  + +     V   +   L  L+L     
Sbjct: 41  FEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

Query: 219 LKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSL 270
             +     L KL +L+ L +       +  EV  + +      K LP LT L
Sbjct: 101 KDLSTIEPLKKLENLKSLDL-------FNCEVTNLNDYRENVFKLLPQLTYL 145

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 36/170 (21%), Positives = 62/170 (36%), Gaps = 24/170 (14%)

Query: 132 IPDNFFKSMIEVRV-VNLTDMILPSSLGLLSNLRTLSLCSCGL---PDISFVGYLKKLEI 187
           IPDN   S   + +  N    +   S      L+ L L  C +    D ++   L  L  
Sbjct: 22  IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS-LSHLST 80

Query: 188 LCLRGSDIVKLPVEV-GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGR---ESF 243
           L L G+ I  L +     L+ L+ L   +   L  +    +  L  L+EL +     +SF
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 244 VDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLL--LEKLER 291
                ++            +L NL  L++    + S+    L  L ++  
Sbjct: 140 -----KLPEY-------FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 13/118 (11%)

Query: 131 TIPDNFFKSMIEVRVVNLTD----MILPSSLGLLSNLRTLSLCSCG---LPDISFVGYLK 183
           TI D  ++S+  +  + LT      +   +   LS+L+ L         L +      LK
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH-LK 124

Query: 184 KLEILCLRGSDIVKLPVEVG---ELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYI 238
            L+ L +  + I    +       LT L+ LDL     ++ I    L  L  +  L +
Sbjct: 125 TLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNL 180

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 147 NLTDMILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELT 206
           +L       +     ++  L+L S  L    F     K+++L L  + I+ +P +V  L 
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQ 473

Query: 207 WLKLLDLRDCCFLKVIPPNILSKLSHLEELYIG 239
            L+ L++     LK +P  +  +L+ L+ +++ 
Sbjct: 474 ALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLH 505

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 37/224 (16%), Positives = 67/224 (29%), Gaps = 36/224 (16%)

Query: 153 LPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLD 212
           LP+    L  L   +     LP +        L+ L +  + +  LP    EL  L   +
Sbjct: 156 LPALPSELCKLWAYNNQLTSLPML-----PSGLQELSVSDNQLASLPTLPSELYKLWAYN 210

Query: 213 LRDCCFLKVIPPNI--LSKL--------------SHLEELYIGRESFVDWEEEVEGVKNA 256
            R    L  +P     L +L              S L+EL +             G+ + 
Sbjct: 211 NR----LTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSL 266

Query: 257 SL---------EELKHLPNLTSLEVHVRDVSSLPRGLL--LEKLERYSIYIRRYFSRKTG 305
           S+         E L HL + T++ +    +S      L  +     YS  I R+      
Sbjct: 267 SVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGAS 326

Query: 306 IWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFR 349
                  + L     L  +   +    +   +   ++    +  
Sbjct: 327 APRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSL 370

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.2 bits (112), Expect = 6e-06
 Identities = 26/136 (19%), Positives = 43/136 (31%), Gaps = 10/136 (7%)

Query: 159 LLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCF 218
           L +    L++   GL  +        +  L +  +++  LP    EL  L++   +    
Sbjct: 38  LNNGNAVLNVGESGLTTLP-DCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQ---- 92

Query: 219 LKVIPPNILSKLSHLEELYIGRESFVDWEEEVEG--VKNASLEEL-KHLPNLTSLEVHVR 275
           L  +P      L  L                +    +    L  L    P L  L V   
Sbjct: 93  LTSLPVLP-PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN 151

Query: 276 DVSSLPRGL-LLEKLE 290
            ++SLP     L KL 
Sbjct: 152 QLASLPALPSELCKLW 167

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 37/171 (21%), Positives = 55/171 (32%), Gaps = 22/171 (12%)

Query: 131 TIPDNFFKSMIEVRVVNLTDMILPSSLGLLSNLRTLSLCSCGLPDI-SFVGYLKKLEILC 189
           T+PD        +  + + D  L S   L   LRTL +    L  +      L +L I  
Sbjct: 54  TLPDCLPAH---ITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFS 110

Query: 190 LRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEE 249
              + +  LP     L  L +   +    L  +P         L+EL +           
Sbjct: 111 NPLTHLPALP---SGLCKLWIFGNQ----LTSLPVLP----PGLQELSVSDNQLASLPAL 159

Query: 250 VEGVK-----NASLEEL-KHLPNLTSLEVHVRDVSSLPRGLL-LEKLERYS 293
              +      N  L  L      L  L V    ++SLP     L KL  Y+
Sbjct: 160 PSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYN 210

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 28/227 (12%), Positives = 62/227 (27%), Gaps = 30/227 (13%)

Query: 153 LPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLD 212
           LP        L+ L +    L  +  +     L  L +  + + +LP  +  L+    ++
Sbjct: 236 LPVLPS---ELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVN 290

Query: 213 LRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWE----------------------EEV 250
           L     L       L +++     Y G     D                         E 
Sbjct: 291 LEG-NPLSERTLQALREITSA-PGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREG 348

Query: 251 EGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTGIWCRQ 310
           E              N  +  + +  +S     +     +          +    +    
Sbjct: 349 EPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAEDEALRANT 408

Query: 311 FRVELNNKICLKDSLIVQLQRIEDLELS-ELQEQDVDYFRNELVKVG 356
           F +        +D +   L ++++++L    ++   D     LV  G
Sbjct: 409 FAMATEATSSCEDRVTFFLHQMKNVQLVHNAEKGQYDNDLAALVATG 455

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 44/225 (19%), Positives = 75/225 (33%), Gaps = 50/225 (22%)

Query: 158 GLLSNLRTLSLCSCGLPDI---SFVGYLKKLEILCLRGSDIVKLPVEV-GELTWLKLLDL 213
           G+ +  R L L    +  +    F      LE L L  + +  +       L  L+ L L
Sbjct: 29  GIPTETRLLDLGKNRIKTLNQDEFAS-FPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87

Query: 214 RDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVH 273
           R    LK+IP  + + LS+L +L I     V   + +           + L NL SLEV 
Sbjct: 88  RSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYM----------FQDLYNLKSLEVG 136

Query: 274 VRDVSSLPRGLL--LEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKI-CLKDSLIVQLQ 330
             D+  +       L  LE+ ++                        +  +    +  L 
Sbjct: 137 DNDLVYISHRAFSGLNSLEQLTLE--------------------KCNLTSIPTEALSHLH 176

Query: 331 RIEDLELSELQEQDVDYFRNELVKVGSSHLKRL-RLEGSDLALNP 374
            +  L L              +  +     KRL RL+  +++  P
Sbjct: 177 GLIVLRLR----------HLNINAIRDYSFKRLYRLKVLEISHWP 211

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 32/194 (16%), Positives = 62/194 (31%), Gaps = 44/194 (22%)

Query: 131 TIPDNFFKSMIEVRVVNLTD----MILPSSLGLLSNLRTLSLCSCGL---PDISFVGYLK 183
            + D  F+ +  ++ + + D     I   +   L++L  L+L  C L   P  +    L 
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH-LH 176

Query: 184 KLEILCLRGSDIVKLPVEV-GELTWLKLLDLRDCCF-----------------------L 219
            L +L LR  +I  +       L  LK+L++    +                       L
Sbjct: 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236

Query: 220 KVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSS 279
             +P   +  L +L  L +        E  +          L  L  L  +++    ++ 
Sbjct: 237 TAVPYLAVRHLVYLRFLNLSYNPISTIEGSM----------LHELLRLQEIQLVGGQLAV 286

Query: 280 LPRGLL--LEKLER 291
           +       L  L  
Sbjct: 287 VEPYAFRGLNYLRV 300

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 46.4 bits (111), Expect = 7e-06
 Identities = 25/171 (14%), Positives = 53/171 (30%), Gaps = 24/171 (14%)

Query: 80  WSDGSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKS 139
           W   +      +    G+  +      +  ++  L + G          P  IP +    
Sbjct: 27  WLPTT---DCCNRTWLGVLCD---TDTQTYRVNNLDLSGLN-----LPKPYPIPSSLAN- 74

Query: 140 MIEVRVVNLTDM-----ILPSSLGLLSNLRTLSLCSCGL----PDISFVGYLKKLEILCL 190
           +  +  + +  +      +P ++  L+ L  L +    +    P   F+  +K L  L  
Sbjct: 75  LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP--DFLSQIKTLVTLDF 132

Query: 191 RGSDIV-KLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGR 240
             + +   LP  +  L  L  +          IP +  S       + I R
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.4 bits (110), Expect = 8e-06
 Identities = 29/148 (19%), Positives = 46/148 (31%), Gaps = 30/148 (20%)

Query: 158 GLLSNLRTLSLCSCGL----PDISFVGYLKKLEILCLRGSDIVKLPVEV-GELTWLKLLD 212
            L S    L L    L     + +    L  L  L L  + +  +  E    +  L+ LD
Sbjct: 36  SLPSYTALLDLSHNNLSRLRAEWTPTR-LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94

Query: 213 LRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKN--ASLEE--LKHLPNLT 268
           L     L  +   + S L  LE L +                N    ++    + +  L 
Sbjct: 95  LSSN-HLHTLDEFLFSDLQALEVLLLYN--------------NHIVVVDRNAFEDMAQLQ 139

Query: 269 SLEVHVRDVSSLPRGLL-----LEKLER 291
            L +    +S  P  L+     L KL  
Sbjct: 140 KLYLSQNQISRFPVELIKDGNKLPKLML 167

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 8/115 (6%)

Query: 157 LGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKL-PVEVGELTWLKLLDLRD 215
                NL  LSL + GL  +S +  L KL+ L L  + I     +   +L  L  L+L  
Sbjct: 45  TAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104

Query: 216 CCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSL 270
                +     L KL  L+ L +      +  +  E V        K LP LT L
Sbjct: 105 NKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESV-------FKLLPQLTYL 152

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.9 bits (105), Expect = 2e-05
 Identities = 37/198 (18%), Positives = 63/198 (31%), Gaps = 26/198 (13%)

Query: 95  HGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPD--NFFKSMIEVRVVNL-TDM 151
             I   ++    +    E LF      ++  E S +   D      +M  +  + +    
Sbjct: 125 SDIADGIVENKEKFAHFEGLFWGDIDFEE-QEISWIEQVDLSPVLDAMPLLNNLKIKGTN 183

Query: 152 ILPSSLGLLSNLRTLSLCSCGLPDIS----FVGYLKKLEILCLR----------GSDIVK 197
            L        NL++L + S GLPD          L  LE L L             ++ +
Sbjct: 184 NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243

Query: 198 LPVEVGELTWLKLLDLRDCCFLKVIPPNILS--KLSHLEELYIGRESFVDWEEEVEGVKN 255
                     LK L + D     V+    L    L  LE + I      D     EG + 
Sbjct: 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD-----EGAR- 297

Query: 256 ASLEELKHLPNLTSLEVH 273
             L+ +  + +L  + + 
Sbjct: 298 LLLDHVDKIKHLKFINMK 315

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 33/112 (29%)

Query: 159 LLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCF 218
            L     +      +  +     L++L+ L +  + I +                     
Sbjct: 40  TLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICR--------------------- 78

Query: 219 LKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSL 270
              I   +   L  L EL +   S V+  +         L+ L  L +LT L
Sbjct: 79  ---IGEGLDQALPDLTELILTNNSLVELGD---------LDPLASLKSLTYL 118

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 158 GLLSNLRTLSLCSCGLPDI---SFVGYLKKLEILCLRGSD-IVKLPVEV-GELTWLKLLD 212
            L  + +TL L    L  I   +F   L  +  + +     + +L       L+ +  ++
Sbjct: 28  SLPPSTQTLKLIETHLRTIPSHAFSN-LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE 86

Query: 213 LRDCCFLKVIPPNILSKLSHLEELYIGR 240
           +R+   L  I P+ L +L  L+ L I  
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFN 114

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 23/155 (14%), Positives = 48/155 (30%), Gaps = 24/155 (15%)

Query: 131 TIPDNFFKSMIEVRVVNLTD---MILP--SSLGLLSNLRTLSLCS----CGLPDISFVGY 181
            I  +  K +  ++ + + +    + P  + +        L +        +P  +F G 
Sbjct: 95  YIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGL 154

Query: 182 LKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKL-SHLEELYIGR 240
             +   L L  +    +       T L  + L    +L VI  +    + S    L + +
Sbjct: 155 CNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214

Query: 241 ESFVDWEEEVEGVKNASLEE--LKHLPNLTSLEVH 273
            S              +L    L+HL  L +    
Sbjct: 215 TSVT------------ALPSKGLEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 16/137 (11%), Positives = 36/137 (26%), Gaps = 22/137 (16%)

Query: 161 SNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEV-GELTWLKLLDLRDCCFL 219
                  +    +  I         + L L  + +  +P      L  +  + +     L
Sbjct: 11  HQEEDFRVTCKDIQRIP--SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL 68

Query: 220 KVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEEL-----KHLPNLTSLEVHV 274
           + +  +    LS +  + I                  +L  +     K LP L  L +  
Sbjct: 69  QQLESHSFYNLSKVTHIEIRN--------------TRNLTYIDPDALKELPLLKFLGIFN 114

Query: 275 RDVSSLPRGLLLEKLER 291
             +   P    +   + 
Sbjct: 115 TGLKMFPDLTKVYSTDI 131

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 43/171 (25%), Positives = 68/171 (39%), Gaps = 22/171 (12%)

Query: 131 TIPDNFFKSMIEVRVVNLTDMILPS-SLGL---LSNLRTLSLCSCGLPDIS---FVGYLK 183
           ++P   F  + ++R++ L D  L +   G+   L NL TL +    L  +    F   L 
Sbjct: 51  SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQ-LV 109

Query: 184 KLEILCLRGSDIVKLPVEV-GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRES 242
            L  L L  + +  LP  V   LT L  L L     L+ +P  +  KL+ L+EL +    
Sbjct: 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQ 168

Query: 243 FVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLL--LEKLER 291
                E               L  L +L++    +  +P G    LEKL+ 
Sbjct: 169 LKRVPEGA----------FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 21/117 (17%), Positives = 48/117 (41%), Gaps = 14/117 (11%)

Query: 131 TIPDNFFKSMIEVRVVNLTD----MILPSSLGLLSNLRTLSLCSCGLPDIS---FVGYLK 183
            +P           +++L +     +       L +L  L L +  +  I    F   L+
Sbjct: 47  AVPKEISPD---TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP-LR 102

Query: 184 KLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGR 240
           KL+ L +  + +V++P  +   + L  L + D   ++ +P  + S L ++  + +G 
Sbjct: 103 KLQKLYISKNHLVEIPPNL--PSSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGG 156

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 35/167 (20%), Positives = 60/167 (35%), Gaps = 33/167 (19%)

Query: 131 TIPDNFFKSMIEVRV-VNLTDMILPSSLGLLSNLRTLSLC-----SCGLPDISFVGYLKK 184
            IP N   S++E+R+  N    +       L N+  + +      + G    +F G   K
Sbjct: 116 EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--K 173

Query: 185 LEILCLRGSDIVKLPVEV-GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELY------ 237
           L  L +  + +  +P ++   L  L L   +    ++ I    L + S L  L       
Sbjct: 174 LNYLRISEAKLTGIPKDLPETLNELHLDHNK----IQAIELEDLLRYSKLYRLGLGHNQI 229

Query: 238 --IGRESFVDWEEEVEGVKNASLEELKHLPN--LTSLEVHVRDVSSL 280
             I   S              +L EL HL N  L+ +   + D+  L
Sbjct: 230 RMIENGSLSFLP---------TLREL-HLDNNKLSRVPAGLPDLKLL 266

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 39/165 (23%)

Query: 173 LPDISFVGYLKKLEILCLRGSDIVKLPVEV-GELTWLKLLDLRDCCFLKVIPPNILSKLS 231
           +P  +F    KKL  + L  + I +L  +    L  L  L L     +  +P ++   L 
Sbjct: 47  IPPGAFSP-YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLF 104

Query: 232 HLEELYIGRESFVDWEEEVEGVKN--ASLEE--LKHLPNLTSLEVHVRDVSSLPRGLL-- 285
            L+ L +                N    L     + L NL  L ++   + ++ +G    
Sbjct: 105 SLQLLLLNA--------------NKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 286 LEKLERYSIYIR----------RYFSRKTGIWCRQFRVELNNKIC 320
           L  ++   +++           ++ +     +     +E +   C
Sbjct: 151 LRAIQT--MHLAQNPFICDCHLKWLAD----YLHTNPIETSGARC 189

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 160 LSNLRTLSLCS---CGLPDISFVGYLKKLEILCLRGSDIVKLPVEV-GELTWLKLLDLRD 215
            ++L  L+L       + D +F G L  L  L L  + +  +   +   L  L++LDL  
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWG-LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356

Query: 216 CCFLKVIPPNILSKLSHLEELYI 238
              ++ +       L +L+EL +
Sbjct: 357 NH-IRALGDQSFLGLPNLKELAL 378

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 26/213 (12%), Positives = 63/213 (29%), Gaps = 42/213 (19%)

Query: 158 GLLSNLRTLSLCSCGLPDISFVGY---LKKLEILCLRGSDIVKLPVEV-GELTWLKLLDL 213
            +      L L +     +   G    L +L  +    + I  +        + +  + L
Sbjct: 29  HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88

Query: 214 RDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKN--ASLEE--LKHLPNLTS 269
                L+ +   +   L  L+ L +                N    +       L ++  
Sbjct: 89  TSN-RLENVQHKMFKGLESLKTLMLRS--------------NRITCVGNDSFIGLSSVRL 133

Query: 270 LEVHVRDVSSLPRGLL--LEKLERYSIYIR----------RYFSRKTGIWCRQFRVELNN 317
           L ++   ++++  G    L  L    + +            +       W R+ R+   N
Sbjct: 134 LSLYDNQITTVAPGAFDTLHSLST--LNLLANPFNCNCYLAWLGE----WLRKKRIVTGN 187

Query: 318 KICLKDSLIVQLQRIEDLELSELQEQDVDYFRN 350
             C K    ++   I+D+ + +    D  +  +
Sbjct: 188 PRCQKPY-FLKEIPIQDVAIQDFTCDDAHHHHH 219

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	379
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.91
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.91
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.91
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.9
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.9
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.9
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.89
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.89
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.89
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.89
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.89
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.89
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.88
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.88
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.88
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.88
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.88
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.88
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.88
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.88
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.88
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.88
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.88
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.87
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.87
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.87
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.87
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.87
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.87
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.87
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.86
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.86
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.85
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.85
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.85
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.84
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.84
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.84
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.83
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.82
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.82
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.82
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.82
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.82
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.82
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.82
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.81
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.81
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.81
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.81
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.8
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.79
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.79
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.79
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.79
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.79
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.79
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.78
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.78
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.78
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.78
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.77
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.77
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.77
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.77
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.75
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.75
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.73
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.73
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.72
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.71
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.71
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.7
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.7
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.7
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.68
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.67
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.66
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.64
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.64
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.61
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.61
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.61
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.61
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.61
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.59
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.59
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.59
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.58
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.58
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.58
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.58
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.57
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.56
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.54
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.53
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.53
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.51
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.48
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.45
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.43
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.43
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.42
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.38
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.38
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.38
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.37
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.34
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.32
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.3
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.3
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.3
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.29
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.26
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.24
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.23
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.19
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.09
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.09
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.01
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.98
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.87
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.86
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.83
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.82
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.73
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.69
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.47
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	98.34
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.31
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.27
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.24
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.08
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.03
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.99
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.79
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.75
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.73
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.49
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.52
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.21
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.92
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.67
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.64
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	94.19
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	89.81
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	86.35

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.91  E-value=5.6e-23  Score=188.58  Aligned_cols=264  Identities=19%  Similarity=0.175  Sum_probs=126.6

Q ss_pred             CCccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccC
Q 016966           83 GSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGL  159 (379)
Q Consensus        83 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~  159 (379)
                      ...++++++|++++|.+..++.+..+++|++|++++|.+.+        ++  .|..+++|++|++++|.   ++. +..
T Consensus        62 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~--------~~--~~~~l~~L~~L~l~~n~i~~~~~-~~~  130 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD--------IS--ALQNLTNLRELYLNEDNISDISP-LAN  130 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--------CG--GGTTCTTCSEEECTTSCCCCCGG-GTT
T ss_pred             hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC--------ch--HHcCCCcCCEEECcCCcccCchh-hcc
Confidence            44556666666666666555555566666666666654322        22  24556666666666665   332 555


Q ss_pred             CCCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEe
Q 016966          160 LSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYI  238 (379)
Q Consensus       160 l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  238 (379)
                      +++|++|++++|.... ++.+..+++|++|++++|.+..++. +..+++|++|++++|.. ..++.  +..+++|+.|++
T Consensus       131 l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~L~l  206 (347)
T 4fmz_A          131 LTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI-EDISP--LASLTSLHYFTA  206 (347)
T ss_dssp             CTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC-CCCGG--GGGCTTCCEEEC
T ss_pred             CCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc-ccccc--ccCCCccceeec
Confidence            6666666666654333 4445555556666665555555443 55555555555555432 22222  344444444444


Q ss_pred             cCCCCcChhhhhhc------------ccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeeccccc-Ccc
Q 016966          239 GRESFVDWEEEVEG------------VKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSR-KTG  305 (379)
Q Consensus       239 ~~~~~~~~~~~~~~------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~  305 (379)
                      .+|.+....+ ...            .....+ .+..+++|+.|++++|.+..++....+++|+.|+++.+..... ...
T Consensus       207 ~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  284 (347)
T 4fmz_A          207 YVNQITDITP-VANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLN  284 (347)
T ss_dssp             CSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred             ccCCCCCCch-hhcCCcCCEEEccCCccCCCc-chhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhc
Confidence            4444433210 000            000011 1455555555555555555443322455555555543332211 112


Q ss_pred             cccceEEEEe-CCccc--chHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCC
Q 016966          306 IWCRQFRVEL-NNKIC--LKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDL  370 (379)
Q Consensus       306 ~~~~~~~L~l-~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~  370 (379)
                      .+++...|.+ ++...  .+..+.. +++|+.|++++|+   ++.++. +  ..+++|++|++++|++
T Consensus       285 ~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~~n~---l~~~~~-~--~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          285 NLSQLNSLFLNNNQLGNEDMEVIGG-LTNLTTLFLSQNH---ITDIRP-L--ASLSKMDSADFANQVI  345 (347)
T ss_dssp             GCTTCSEEECCSSCCCGGGHHHHHT-CTTCSEEECCSSS---CCCCGG-G--GGCTTCSEESSSCC--
T ss_pred             CCCCCCEEECcCCcCCCcChhHhhc-cccCCEEEccCCc---cccccC-h--hhhhccceeehhhhcc
Confidence            2233335555 22221  2333334 2556666666665   444333 1  2356666666666554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.91  E-value=2.1e-22  Score=184.76  Aligned_cols=234  Identities=20%  Similarity=0.252  Sum_probs=157.6

Q ss_pred             CCCCccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccc
Q 016966           81 SDGSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSL  157 (379)
Q Consensus        81 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i  157 (379)
                      +....++++++|++++|.+..++.+..+++|++|++++|.+.+        ++.  +..+++|++|++++|.   .+..+
T Consensus        82 ~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~--------~~~--~~~l~~L~~L~l~~n~~~~~~~~~  151 (347)
T 4fmz_A           82 SPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISD--------ISP--LANLTKMYSLNLGANHNLSDLSPL  151 (347)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCC--------CGG--GTTCTTCCEEECTTCTTCCCCGGG
T ss_pred             hhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccC--------chh--hccCCceeEEECCCCCCcccccch
Confidence            3356778899999999988888777789999999999876543        232  5667777777777774   33346


Q ss_pred             cCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccch---------------------hhcCCCCCCEEeccCC
Q 016966          158 GLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPV---------------------EVGELTWLKLLDLRDC  216 (379)
Q Consensus       158 ~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~---------------------~~~~l~~L~~L~l~~~  216 (379)
                      ..+++|++|++++|.+.....+..+++|++|++++|.+..++.                     .+..+++|++|++++|
T Consensus       152 ~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n  231 (347)
T 4fmz_A          152 SNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNN  231 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS
T ss_pred             hhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCC
Confidence            6666667776666666553335566666666666666555543                     1444555555555554


Q ss_pred             CCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEe
Q 016966          217 CFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYI  296 (379)
Q Consensus       217 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~  296 (379)
                      ... .++.  +..+++|++|++++|.+..            .+.+..+++|+.|++++|.+..++....+++|+.|+++.
T Consensus       232 ~l~-~~~~--~~~l~~L~~L~l~~n~l~~------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~  296 (347)
T 4fmz_A          232 KIT-DLSP--LANLSQLTWLEIGTNQISD------------INAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNN  296 (347)
T ss_dssp             CCC-CCGG--GTTCTTCCEEECCSSCCCC------------CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCS
T ss_pred             ccC-CCcc--hhcCCCCCEEECCCCccCC------------ChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcC
Confidence            432 2222  4566666666666665554            356888999999999999999886544789999999976


Q ss_pred             ecccccC---cccccceEEEEe-CCccc-chHHHHHHhcccceeeccccc
Q 016966          297 RRYFSRK---TGIWCRQFRVEL-NNKIC-LKDSLIVQLQRIEDLELSELQ  341 (379)
Q Consensus       297 ~~~~~~~---~~~~~~~~~L~l-~~~~~-~~~~~~~~~~~L~~L~l~~~~  341 (379)
                      +......   +..+++...|++ ++... .++ +.. +++|++|++++|.
T Consensus       297 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~-l~~L~~L~l~~N~  344 (347)
T 4fmz_A          297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LAS-LSKMDSADFANQV  344 (347)
T ss_dssp             SCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGG-CTTCSEESSSCC-
T ss_pred             CcCCCcChhHhhccccCCEEEccCCccccccC-hhh-hhccceeehhhhc
Confidence            6543222   234566668999 44444 444 556 5999999999997

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.91  E-value=2.6e-23  Score=197.87  Aligned_cols=285  Identities=18%  Similarity=0.185  Sum_probs=190.3

Q ss_pred             cCcCCCCCCccCCccEEEEeCCCCCCCC--CCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-
Q 016966           76 GCREWSDGSTIKHFTSIVLHGIKPNLLP--EVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-  152 (379)
Q Consensus        76 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-  152 (379)
                      ++...+.  ..+++++|++++|.+..++  .+..+++|+.|++++|.+       ...+++..|.++++|++|++++|. 
T Consensus        21 ~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~-------~~~i~~~~~~~l~~L~~L~Ls~n~l   91 (455)
T 3v47_A           21 GLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP-------GLVIRNNTFRGLSSLIILKLDYNQF   91 (455)
T ss_dssp             CCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST-------TCEECTTTTTTCTTCCEEECTTCTT
T ss_pred             CcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcc-------cceECcccccccccCCEEeCCCCcc
Confidence            4445554  4588999999999996653  355899999999999765       446777778999999999999998 


Q ss_pred             ---CCccccCCCCCcEEEeecCCCCC--ccc--ccCcCCCcEEEeeCCcCccc-chh-hcCCCCCCEEeccCCCCCcccC
Q 016966          153 ---LPSSLGLLSNLRTLSLCSCGLPD--ISF--VGYLKKLEILCLRGSDIVKL-PVE-VGELTWLKLLDLRDCCFLKVIP  223 (379)
Q Consensus       153 ---lp~~i~~l~~L~~L~l~~~~l~~--~~~--~~~l~~L~~L~l~~~~l~~l-p~~-~~~l~~L~~L~l~~~~~~~~~~  223 (379)
                         .|..++.+++|++|++++|.+..  +..  +..+++|++|++++|.+..+ |.. +..+++|++|++++|......+
T Consensus        92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  171 (455)
T 3v47_A           92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE  171 (455)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred             CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence               57889999999999999999987  444  88999999999999999977 444 7899999999999987655544


Q ss_pred             hhhhC----------------------------------CCCCCcEEEecCCCCcChhhhhhcc----------------
Q 016966          224 PNILS----------------------------------KLSHLEELYIGRESFVDWEEEVEGV----------------  253 (379)
Q Consensus       224 ~~~l~----------------------------------~l~~L~~L~l~~~~~~~~~~~~~~~----------------  253 (379)
                      .. +.                                  .+++|++|++++|.+.+..+.....                
T Consensus       172 ~~-l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~  250 (455)
T 3v47_A          172 ED-LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY  250 (455)
T ss_dssp             TT-SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred             hh-hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence            32 22                                  3367888888888765432111100                


Q ss_pred             -------------------------------------cccchHhhcCCCCCcEEEeeccCCCCCCc-cc-cccCCcEEEE
Q 016966          254 -------------------------------------KNASLEELKHLPNLTSLEVHVRDVSSLPR-GL-LLEKLERYSI  294 (379)
Q Consensus       254 -------------------------------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l  294 (379)
                                                           ....+..++.+++|+.|++++|.+..++. .+ .+++|+.|++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  330 (455)
T 3v47_A          251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL  330 (455)
T ss_dssp             TTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEEC
Confidence                                                 00123345566666666666666664432 33 4566666666


Q ss_pred             Eeeccccc---CcccccceEEEEe-CCccc-c-hHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCC
Q 016966          295 YIRRYFSR---KTGIWCRQFRVEL-NNKIC-L-KDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGS  368 (379)
Q Consensus       295 ~~~~~~~~---~~~~~~~~~~L~l-~~~~~-~-~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c  368 (379)
                      +.+.....   .+..+++...|++ .+... . |..+..+ ++|++|++++|.   ++.++...+ ..+++|++|++++|
T Consensus       331 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~---l~~~~~~~~-~~l~~L~~L~l~~N  405 (455)
T 3v47_A          331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL-PNLKELALDTNQ---LKSVPDGIF-DRLTSLQKIWLHTN  405 (455)
T ss_dssp             CSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSC---CSCCCTTTT-TTCTTCCEEECCSS
T ss_pred             CCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccc-ccccEEECCCCc---cccCCHhHh-ccCCcccEEEccCC
Confidence            54433211   1223344446666 32222 2 4444453 677777777765   555554432 24667777777777


Q ss_pred             CCccCCC
Q 016966          369 DLALNPA  375 (379)
Q Consensus       369 ~~l~~~~  375 (379)
                      +..-..|
T Consensus       406 ~l~~~~~  412 (455)
T 3v47_A          406 PWDCSCP  412 (455)
T ss_dssp             CBCCCTT
T ss_pred             CcccCCC
Confidence            6665544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.90  E-value=3.3e-24  Score=193.89  Aligned_cols=244  Identities=16%  Similarity=0.205  Sum_probs=189.3

Q ss_pred             CCccEEEEeCCCCC---CCCC-CCCCCCccEEEeec-CCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccc
Q 016966           87 KHFTSIVLHGIKPN---LLPE-VLECPQLELLFIRG-GGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSL  157 (379)
Q Consensus        87 ~~l~~L~l~~~~~~---~~~~-~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i  157 (379)
                      .++++|+++++.+.   .+|. +..+++|+.|++++ |.+       ...+|.. |.++++|++|++++|.    .|..+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l-------~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~  121 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL-------VGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFL  121 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE-------ESCCCGG-GGGCTTCSEEEEEEECCEEECCGGG
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcc-------cccCChh-HhcCCCCCEEECcCCeeCCcCCHHH
Confidence            57889999998885   4665 44888999999984 554       3345554 5788999999998887    77888


Q ss_pred             cCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCc-ccchhhcCCC-CCCEEeccCCCCCcccChhhhCCCCCC
Q 016966          158 GLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIV-KLPVEVGELT-WLKLLDLRDCCFLKVIPPNILSKLSHL  233 (379)
Q Consensus       158 ~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~L  233 (379)
                      ..+++|++|++++|.+..  |..+..+++|++|++++|.++ .+|..++.++ +|++|++++|...+..|.. ++.++ |
T Consensus       122 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L  199 (313)
T 1ogq_A          122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-L  199 (313)
T ss_dssp             GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-C
T ss_pred             hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-c
Confidence            889999999999998874  778888999999999999888 7888888887 8999999988777677776 67776 9


Q ss_pred             cEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc-cccCCcEEEEEeecccccCcccccceEE
Q 016966          234 EELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL-LLEKLERYSIYIRRYFSRKTGIWCRQFR  312 (379)
Q Consensus       234 ~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~  312 (379)
                      +.|++++|.+.+.          .+..++.+++|+.|++++|.++..+..+ .+++|+.|+++.+...            
T Consensus       200 ~~L~Ls~N~l~~~----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~------------  257 (313)
T 1ogq_A          200 AFVDLSRNMLEGD----------ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY------------  257 (313)
T ss_dssp             SEEECCSSEEEEC----------CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCE------------
T ss_pred             cEEECcCCcccCc----------CCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCccc------------
Confidence            9999998887653          3677788889999999988887443334 6788888888544332            


Q ss_pred             EEeCCcccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccCC
Q 016966          313 VELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNP  374 (379)
Q Consensus       313 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  374 (379)
                            ..+|.++.. +++|++|++++|.  ....+|..   ..+++|+.|++.+|+.+.-+
T Consensus       258 ------~~~p~~l~~-l~~L~~L~Ls~N~--l~~~ip~~---~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          258 ------GTLPQGLTQ-LKFLHSLNVSFNN--LCGEIPQG---GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             ------ECCCGGGGG-CTTCCEEECCSSE--EEEECCCS---TTGGGSCGGGTCSSSEEEST
T ss_pred             ------CcCChHHhc-CcCCCEEECcCCc--ccccCCCC---ccccccChHHhcCCCCccCC
Confidence                  135555666 4999999999998  44466664   35899999999999966543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.90  E-value=3e-23  Score=190.85  Aligned_cols=261  Identities=18%  Similarity=0.135  Sum_probs=170.6

Q ss_pred             cEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcE
Q 016966           90 TSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRT  165 (379)
Q Consensus        90 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~  165 (379)
                      ...+.+++.+..+|... .++|+.|++++|.+        ..++...|.++++|++|++++|.    .|..+..+++|++
T Consensus        34 ~~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           34 GICKGSSGSLNSIPSGL-TEAVKSLDLSNNRI--------TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             SEEECCSTTCSSCCTTC-CTTCCEEECTTSCC--------CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             eEeeCCCCCcccccccc-cccCcEEECCCCcC--------cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence            34566666666666522 24677777777543        34555456677777777777776    4455777777777


Q ss_pred             EEeecCCCCC-ccc-ccCcCCCcEEEeeCCcCcccch--hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCC
Q 016966          166 LSLCSCGLPD-ISF-VGYLKKLEILCLRGSDIVKLPV--EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE  241 (379)
Q Consensus       166 L~l~~~~l~~-~~~-~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  241 (379)
                      |++++|.++. +.. ++.+++|++|++++|.++.+|.  .+..+++|++|++++|.....++...++.+++|++|++++|
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence            7777777776 433 6777777777777777777765  56677777777777765555555444677777777777777


Q ss_pred             CCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc--cccCCcEEEEEeecccccCccccc------ceEEE
Q 016966          242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSIYIRRYFSRKTGIWC------RQFRV  313 (379)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~------~~~~L  313 (379)
                      .+.+.          .+..++.+++|+.|++++|.+..++...  .+++|+.|+++.+.........+.      ....+
T Consensus       185 ~l~~~----------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l  254 (353)
T 2z80_A          185 DLQSY----------EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF  254 (353)
T ss_dssp             TCCEE----------CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEE
T ss_pred             CcCcc----------CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcc
Confidence            76653          2556667777777777777776666544  367777777765544322211111      11133


Q ss_pred             Ee-C------CcccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccCC
Q 016966          314 EL-N------NKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNP  374 (379)
Q Consensus       314 ~l-~------~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  374 (379)
                      .+ .      ....+|+++..+ ++|+.|++++|.   ++.++..++ ..+++|++|++++|+....+
T Consensus       255 ~L~~~~l~~~~l~~l~~~l~~l-~~L~~L~Ls~N~---l~~i~~~~~-~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          255 TFRNVKITDESLFQVMKLLNQI-SGLLELEFSRNQ---LKSVPDGIF-DRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             EEESCBCCHHHHHHHHHHHHTC-TTCCEEECCSSC---CCCCCTTTT-TTCTTCCEEECCSSCBCCCH
T ss_pred             ccccccccCcchhhhHHHHhcc-cCCCEEECCCCC---CCccCHHHH-hcCCCCCEEEeeCCCccCcC
Confidence            33 1      112356667774 999999999998   788887653 35899999999999876543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=2.5e-23  Score=189.22  Aligned_cols=221  Identities=19%  Similarity=0.218  Sum_probs=173.7

Q ss_pred             CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC-cccccCc
Q 016966          107 ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD-ISFVGYL  182 (379)
Q Consensus       107 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l  182 (379)
                      ..++++.|++.+|.+        ..+|+.+ .++++|++|++++|.   +|..++.+++|++|++++|.+.. |..++++
T Consensus        79 ~~~~l~~L~L~~n~l--------~~lp~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l  149 (328)
T 4fcg_A           79 TQPGRVALELRSVPL--------PQFPDQA-FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASL  149 (328)
T ss_dssp             TSTTCCEEEEESSCC--------SSCCSCG-GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGC
T ss_pred             cccceeEEEccCCCc--------hhcChhh-hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcC
Confidence            457889999999654        3566665 458899999999988   88888899999999999999888 7888899


Q ss_pred             CCCcEEEeeCCc-CcccchhhcC---------CCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhc
Q 016966          183 KKLEILCLRGSD-IVKLPVEVGE---------LTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEG  252 (379)
Q Consensus       183 ~~L~~L~l~~~~-l~~lp~~~~~---------l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  252 (379)
                      ++|++|++++|+ +..+|..+..         +++|++|++++|... .+|.. ++.+++|++|++++|.+..       
T Consensus       150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~-l~~l~~L~~L~L~~N~l~~-------  220 (328)
T 4fcg_A          150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS-IANLQNLKSLKIRNSPLSA-------  220 (328)
T ss_dssp             TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGG-GGGCTTCCEEEEESSCCCC-------
T ss_pred             cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHh-hcCCCCCCEEEccCCCCCc-------
Confidence            999999999874 4477766554         889999999987654 77776 7889999999999888876       


Q ss_pred             ccccchHhhcCCCCCcEEEeeccCCC-CCCccc-cccCCcEEEEEeecccccCcccccceEEEEeCCcccchHHHHHHhc
Q 016966          253 VKNASLEELKHLPNLTSLEVHVRDVS-SLPRGL-LLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQ  330 (379)
Q Consensus       253 ~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~  330 (379)
                          ++..++.+++|+.|++++|.+. .+|..+ .+++|+.|+++.+...                  ..+|..+.. ++
T Consensus       221 ----l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~------------------~~~p~~~~~-l~  277 (328)
T 4fcg_A          221 ----LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL------------------LTLPLDIHR-LT  277 (328)
T ss_dssp             ----CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC------------------CBCCTTGGG-CT
T ss_pred             ----CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch------------------hhcchhhhc-CC
Confidence                4557888889999999987766 666665 6788888888443332                  234555655 49


Q ss_pred             ccceeeccccccccccccccccccccCCCCcEEEecCCCCcc
Q 016966          331 RIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLAL  372 (379)
Q Consensus       331 ~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~  372 (379)
                      +|++|++++|.  .+..+|..+..  +++|+.+.+..+....
T Consensus       278 ~L~~L~L~~n~--~~~~iP~~l~~--L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          278 QLEKLDLRGCV--NLSRLPSLIAQ--LPANCIILVPPHLQAQ  315 (328)
T ss_dssp             TCCEEECTTCT--TCCCCCGGGGG--SCTTCEEECCGGGSCC
T ss_pred             CCCEEeCCCCC--chhhccHHHhh--ccCceEEeCCHHHHHH
Confidence            99999999999  88899988765  9999999888655443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.90  E-value=1.9e-22  Score=193.13  Aligned_cols=272  Identities=18%  Similarity=0.169  Sum_probs=144.8

Q ss_pred             ccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCc-ccc
Q 016966           85 TIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPS-SLG  158 (379)
Q Consensus        85 ~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~-~i~  158 (379)
                      ..++++.|++++|.+..++.  +..+++|+.|++++|.+        ..+++..|.++++|++|++++|.   +|. .+.
T Consensus        30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  101 (477)
T 2id5_A           30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV--------SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT  101 (477)
T ss_dssp             CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC--------CEECTTTTTTCTTCCEEECCSSCCCSCCTTSST
T ss_pred             CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCcc--------CEeChhhhhCCccCCEEECCCCcCCccCccccc
Confidence            34566777777776654432  34666777777766543        23333445666666666666665   332 355


Q ss_pred             CCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccc-hhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcE
Q 016966          159 LLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLP-VEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEE  235 (379)
Q Consensus       159 ~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  235 (379)
                      .+++|++|++++|.+..  +..+..+++|++|++++|.+..++ ..+..+++|++|++++|.. ..++...+..+++|+.
T Consensus       102 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~~  180 (477)
T 2id5_A          102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIV  180 (477)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC-SSCCHHHHTTCTTCCE
T ss_pred             CCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC-cccChhHhcccCCCcE
Confidence            66666666666666655  345566666666666666665443 3455666666666666543 3344433566666666


Q ss_pred             EEecCCCCcChhhhhhc--------------ccccchHhhcCCCCCcEEEeeccCCCCCCccc--cccCCcEEEEEeecc
Q 016966          236 LYIGRESFVDWEEEVEG--------------VKNASLEELKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSIYIRRY  299 (379)
Q Consensus       236 L~l~~~~~~~~~~~~~~--------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~  299 (379)
                      |++.+|.+....+...+              .....+.......+|+.|++++|.++.+|...  .+++|+.|+++.+..
T Consensus       181 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  260 (477)
T 2id5_A          181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI  260 (477)
T ss_dssp             EEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCC
T ss_pred             EeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcC
Confidence            66666655443200000              00001222222335566666666666555322  456666666644432


Q ss_pred             cc---cCcccccceEEEEe-CCccc-c-hHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCC
Q 016966          300 FS---RKTGIWCRQFRVEL-NNKIC-L-KDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDL  370 (379)
Q Consensus       300 ~~---~~~~~~~~~~~L~l-~~~~~-~-~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~  370 (379)
                      ..   ..+..+++...|.+ ++... + +..+.. +++|+.|++++|.   ++.++...+ ..+++|++|++++|+.
T Consensus       261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~N~---l~~~~~~~~-~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG-LNYLRVLNVSGNQ---LTTLEESVF-HSVGNLETLILDSNPL  332 (477)
T ss_dssp             CEECTTSCTTCTTCCEEECCSSCCSEECTTTBTT-CTTCCEEECCSSC---CSCCCGGGB-SCGGGCCEEECCSSCE
T ss_pred             CccChhhccccccCCEEECCCCccceECHHHhcC-cccCCEEECCCCc---CceeCHhHc-CCCcccCEEEccCCCc
Confidence            21   11223344446666 22222 2 333444 3677777777775   555555432 2366777777776664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.90  E-value=2.9e-22  Score=186.88  Aligned_cols=267  Identities=17%  Similarity=0.138  Sum_probs=163.4

Q ss_pred             ccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCcccc
Q 016966           85 TIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLG  158 (379)
Q Consensus        85 ~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~  158 (379)
                      .+++++++++.++.+..+|.  +..+++|++|++++|.+        ..+++..|..+++|++|++++|.    .|..++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  114 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI--------EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ  114 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC--------CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcc--------cccChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence            34667777777777666665  23667777777777543        33444456677777777777776    344566


Q ss_pred             CCCCCcEEEeecCCCCC-ccc-ccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcE
Q 016966          159 LLSNLRTLSLCSCGLPD-ISF-VGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEE  235 (379)
Q Consensus       159 ~l~~L~~L~l~~~~l~~-~~~-~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  235 (379)
                      .+++|++|++++|.+.. |.. +..+++|++|++++|.+..++. .+..+++|++|++++|.... ++   ++.+++|+.
T Consensus       115 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~---~~~l~~L~~  190 (390)
T 3o6n_A          115 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFH  190 (390)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC---GGGCTTCSE
T ss_pred             CCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cc---cccccccce
Confidence            77777777777777766 433 4667777777777777765543 46677777777777755332 22   222333333


Q ss_pred             EEecCC-------------------CCcChhhhhh---------cccccchHhhcCCCCCcEEEeeccCCCCC-Cccc-c
Q 016966          236 LYIGRE-------------------SFVDWEEEVE---------GVKNASLEELKHLPNLTSLEVHVRDVSSL-PRGL-L  285 (379)
Q Consensus       236 L~l~~~-------------------~~~~~~~~~~---------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~-~  285 (379)
                      |++++|                   .+...+....         +..-.....+..+++|+.|++++|.+..+ |..+ .
T Consensus       191 L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  270 (390)
T 3o6n_A          191 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK  270 (390)
T ss_dssp             EECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             eecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccc
Confidence            333322                   2221110000         00000124567788888888888888754 4444 6


Q ss_pred             ccCCcEEEEEeecccc--cCcccccceEEEEe--CCcccchHHHHHHhcccceeeccccccccccccccccccccCCCCc
Q 016966          286 LEKLERYSIYIRRYFS--RKTGIWCRQFRVEL--NNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLK  361 (379)
Q Consensus       286 ~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~l--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~  361 (379)
                      +++|+.|+++.+....  .....+++...|++  +....+|..+..+ ++|+.|++++|.   ++.++    ...+++|+
T Consensus       271 l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l-~~L~~L~L~~N~---i~~~~----~~~~~~L~  342 (390)
T 3o6n_A          271 MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQF-DRLENLYLDHNS---IVTLK----LSTHHTLK  342 (390)
T ss_dssp             CSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHH-TTCSEEECCSSC---CCCCC----CCTTCCCS
T ss_pred             cccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCcccccc-CcCCEEECCCCc---cceeC----chhhccCC
Confidence            7888888886554331  11234556668888  3344467777774 899999999987   66664    23488999


Q ss_pred             EEEecCCCCc
Q 016966          362 RLRLEGSDLA  371 (379)
Q Consensus       362 ~L~l~~c~~l  371 (379)
                      +|++++|+..
T Consensus       343 ~L~l~~N~~~  352 (390)
T 3o6n_A          343 NLTLSHNDWD  352 (390)
T ss_dssp             EEECCSSCEE
T ss_pred             EEEcCCCCcc
Confidence            9999988753

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=4.6e-23  Score=208.35  Aligned_cols=266  Identities=21%  Similarity=0.229  Sum_probs=176.7

Q ss_pred             CccEEEEeCCCC-CCCCC-CCC--CCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccC
Q 016966           88 HFTSIVLHGIKP-NLLPE-VLE--CPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGL  159 (379)
Q Consensus        88 ~l~~L~l~~~~~-~~~~~-~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~  159 (379)
                      +++.|++++|.+ ..++. ...  +++|+.|.+.+|.+       ...+|. .|..+++|++|++++|.    .|..++.
T Consensus       369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l-------~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  440 (768)
T 3rgz_A          369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF-------TGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGS  440 (768)
T ss_dssp             TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE-------EEECCG-GGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred             CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc-------ccccCH-HHhcCCCCCEEECcCCcccCcccHHHhc
Confidence            677777777766 22332 222  56777777777543       223343 34667777777777776    6666777


Q ss_pred             CCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCc-ccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEE
Q 016966          160 LSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIV-KLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEEL  236 (379)
Q Consensus       160 l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L  236 (379)
                      +++|++|++++|.+..  |..+..+++|++|++++|.++ .+|..+..+++|++|++++|...+.+|.. ++.+++|+.|
T Consensus       441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L  519 (768)
T 3rgz_A          441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAIL  519 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEE
T ss_pred             CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEE
Confidence            7777777777777664  566777777777777777666 56666777777777777777766666665 5777777777


Q ss_pred             EecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC-CCCccc-------------------------------
Q 016966          237 YIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS-SLPRGL-------------------------------  284 (379)
Q Consensus       237 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-------------------------------  284 (379)
                      ++++|.+.+.          .+..++.+++|+.|++++|.+. .+|..+                               
T Consensus       520 ~L~~N~l~~~----------~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (768)
T 3rgz_A          520 KLSNNSFSGN----------IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG  589 (768)
T ss_dssp             ECCSSCCEEE----------CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred             ECCCCcccCc----------CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccc
Confidence            7777766543          3566667777777777766554 343221                               


Q ss_pred             ----------------------------------------cccCCcEEEEEeecccccC---cccccceEEEEe-CCcc-
Q 016966          285 ----------------------------------------LLEKLERYSIYIRRYFSRK---TGIWCRQFRVEL-NNKI-  319 (379)
Q Consensus       285 ----------------------------------------~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~l-~~~~-  319 (379)
                                                              .+++|+.|+++.+...+..   ++.++....|++ .+.. 
T Consensus       590 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  669 (768)
T 3rgz_A          590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS  669 (768)
T ss_dssp             SEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             cccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccC
Confidence                                                    1355667777555443222   223344446777 3333 


Q ss_pred             -cchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccCCCCC
Q 016966          320 -CLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNPAES  377 (379)
Q Consensus       320 -~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  377 (379)
                       .+|+.++.+ ++|+.|++++|.  ....+|..+..  +++|++|++++|+....+|..
T Consensus       670 g~ip~~l~~L-~~L~~LdLs~N~--l~g~ip~~l~~--l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          670 GSIPDEVGDL-RGLNILDLSSNK--LDGRIPQAMSA--LTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             SCCCGGGGGC-TTCCEEECCSSC--CEECCCGGGGG--CCCCSEEECCSSEEEEECCSS
T ss_pred             CCCChHHhCC-CCCCEEECCCCc--ccCcCChHHhC--CCCCCEEECcCCcccccCCCc
Confidence             378888885 999999999998  55578877654  999999999999988777654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.89  E-value=1.3e-23  Score=207.81  Aligned_cols=256  Identities=12%  Similarity=0.132  Sum_probs=185.6

Q ss_pred             CCC-CCCCCCccEEEeecCCCCCC--CCCCCc--------ccChhhhh--CCCceeEEEecCCC----CCccccCCCCCc
Q 016966          102 LPE-VLECPQLELLFIRGGGRDDP--WETSPV--------TIPDNFFK--SMIEVRVVNLTDMI----LPSSLGLLSNLR  164 (379)
Q Consensus       102 ~~~-~~~~~~L~~L~l~~n~~~~~--~~~~~~--------~~~~~~~~--~l~~L~~L~l~~~~----lp~~i~~l~~L~  164 (379)
                      +|. +..+++|++|++++|.+...  +..+..        .+|..+ .  ++++|++|++++|.    +|..++++++|+
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  276 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ  276 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence            444 34789999999999776430  000000        066654 5  79999999999997    888999999999


Q ss_pred             EEEeecCC-CCC---cccccCc------CCCcEEEeeCCcCcccch--hhcCCCCCCEEeccCCCCCcccChhhhCCCCC
Q 016966          165 TLSLCSCG-LPD---ISFVGYL------KKLEILCLRGSDIVKLPV--EVGELTWLKLLDLRDCCFLKVIPPNILSKLSH  232 (379)
Q Consensus       165 ~L~l~~~~-l~~---~~~~~~l------~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~  232 (379)
                      +|++++|. ++.   |..++++      ++|++|++++|.++.+|.  .++.+++|++|++++|...+.+| . ++.+++
T Consensus       277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~  354 (636)
T 4eco_A          277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIK  354 (636)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEE
T ss_pred             EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCC
Confidence            99999998 873   6777776      999999999999999998  89999999999999988777888 4 799999


Q ss_pred             CcEEEecCCCCcChhhhhhcccccchHhhcCCCC-CcEEEeeccCCCCCCcccc---ccCCcEEEEEeecccccCcc---
Q 016966          233 LEELYIGRESFVDWEEEVEGVKNASLEELKHLPN-LTSLEVHVRDVSSLPRGLL---LEKLERYSIYIRRYFSRKTG---  305 (379)
Q Consensus       233 L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~---  305 (379)
                      |+.|++++|.+..           ++..+..+++ |+.|++++|.++.+|..+.   +++|+.|+++.+........   
T Consensus       355 L~~L~L~~N~l~~-----------lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  423 (636)
T 4eco_A          355 LASLNLAYNQITE-----------IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD  423 (636)
T ss_dssp             ESEEECCSSEEEE-----------CCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred             CCEEECCCCcccc-----------ccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhc
Confidence            9999999998874           5677888888 9999999999998887662   44788888866655432222   


Q ss_pred             -------cccceEEEEe--CCcccchHHHHHHhcccceeecccccccccccccccccccc------CCCCcEEEecCCCC
Q 016966          306 -------IWCRQFRVEL--NNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVG------SSHLKRLRLEGSDL  370 (379)
Q Consensus       306 -------~~~~~~~L~l--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~------~~~L~~L~l~~c~~  370 (379)
                             ...+...|.+  +....+|..+...+++|++|++++|.   ++.++...+...      +++|++|++++|..
T Consensus       424 ~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~---l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  500 (636)
T 4eco_A          424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM---LTEIPKNSLKDENENFKNTYLLTSIDLRFNKL  500 (636)
T ss_dssp             TTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC---CSBCCSSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred             ccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC---CCCcCHHHhccccccccccCCccEEECcCCcC
Confidence                   2224557777  33334666555434777777777776   455554433210      11555555555555


Q ss_pred             ccCC
Q 016966          371 ALNP  374 (379)
Q Consensus       371 l~~~  374 (379)
                      ..+|
T Consensus       501 ~~lp  504 (636)
T 4eco_A          501 TKLS  504 (636)
T ss_dssp             CBCC
T ss_pred             CccC
Confidence            5444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.89  E-value=6.7e-23  Score=202.75  Aligned_cols=275  Identities=13%  Similarity=0.157  Sum_probs=181.6

Q ss_pred             ccCCccEEEEeCCCC-CCCCC-CCCCCCccEEEeecCC-CCCCCCCCCc-ccChhhhhCC------CceeEEEecCCC--
Q 016966           85 TIKHFTSIVLHGIKP-NLLPE-VLECPQLELLFIRGGG-RDDPWETSPV-TIPDNFFKSM------IEVRVVNLTDMI--  152 (379)
Q Consensus        85 ~~~~l~~L~l~~~~~-~~~~~-~~~~~~L~~L~l~~n~-~~~~~~~~~~-~~~~~~~~~l------~~L~~L~l~~~~--  152 (379)
                      .++++++|++++|.+ ..+|. +..+++|+.|++++|. +       .. .+|..+ ..+      ++|++|++++|.  
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l-------~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI-------SGEQLKDDW-QALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS-------CHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCS
T ss_pred             ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC-------ccccchHHH-HhhhccccCCCCCEEECCCCcCC
Confidence            788999999999987 66775 4489999999999976 4       33 466554 334      899999999998  


Q ss_pred             -CCc--cccCCCCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCC-CCEEeccCCCCCcccChhhh
Q 016966          153 -LPS--SLGLLSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTW-LKLLDLRDCCFLKVIPPNIL  227 (379)
Q Consensus       153 -lp~--~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~-L~~L~l~~~~~~~~~~~~~l  227 (379)
                       +|.  .++.+++|++|++++|.+.. .+.++.+++|++|++++|.++.+|..+..+++ |++|++++|... .+|.. +
T Consensus       319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~-~  396 (636)
T 4eco_A          319 TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNI-F  396 (636)
T ss_dssp             SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSC-C
T ss_pred             ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchh-h
Confidence             887  88999999999999999884 33888888999999999988888888888888 889988887755 66754 4


Q ss_pred             CCCC--CCcEEEecCCCCcChhhhhhc--------------------ccccchH-hhcCCCCCcEEEeeccCCCCCCccc
Q 016966          228 SKLS--HLEELYIGRESFVDWEEEVEG--------------------VKNASLE-ELKHLPNLTSLEVHVRDVSSLPRGL  284 (379)
Q Consensus       228 ~~l~--~L~~L~l~~~~~~~~~~~~~~--------------------~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~  284 (379)
                      +.++  +|+.|++++|.+.+..+...+                    ....++. .+..+++|+.|++++|.++.+|...
T Consensus       397 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~  476 (636)
T 4eco_A          397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS  476 (636)
T ss_dssp             CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSS
T ss_pred             hhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHH
Confidence            5443  777777777777553211000                    0011222 2334566666666666666555543


Q ss_pred             -c-c-------cCCcEEEEEeecccccCcc------cccceEEEEe--CCcccchHHHHHHhcccceeecc------ccc
Q 016966          285 -L-L-------EKLERYSIYIRRYFSRKTG------IWCRQFRVEL--NNKICLKDSLIVQLQRIEDLELS------ELQ  341 (379)
Q Consensus       285 -~-~-------~~L~~L~l~~~~~~~~~~~------~~~~~~~L~l--~~~~~~~~~~~~~~~~L~~L~l~------~~~  341 (379)
                       . .       ++|+.|+++.+...  ..+      .+++...|++  +....+|..+..+ ++|+.|+++      +|.
T Consensus       477 ~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l-~~L~~L~Ls~N~~ls~N~  553 (636)
T 4eco_A          477 LKDENENFKNTYLLTSIDLRFNKLT--KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNS-STLKGFGIRNQRDAQGNR  553 (636)
T ss_dssp             SEETTEECTTGGGCCEEECCSSCCC--BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGC-SSCCEEECCSCBCTTCCB
T ss_pred             hccccccccccCCccEEECcCCcCC--ccChhhhhccCCCcCEEECCCCCCCCcChhhhcC-CCCCEEECCCCcccccCc
Confidence             1 1       16666666444333  111      2334446666  2333355555553 777777773      333


Q ss_pred             cccccccccccccccCCCCcEEEecCCCCccCCCC
Q 016966          342 EQDVDYFRNELVKVGSSHLKRLRLEGSDLALNPAE  376 (379)
Q Consensus       342 ~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  376 (379)
                        ....+|..+..  +++|++|++++|....+|..
T Consensus       554 --l~~~~p~~l~~--l~~L~~L~Ls~N~l~~ip~~  584 (636)
T 4eco_A          554 --TLREWPEGITL--CPSLTQLQIGSNDIRKVNEK  584 (636)
T ss_dssp             --CCCCCCTTGGG--CSSCCEEECCSSCCCBCCSC
T ss_pred             --ccccChHHHhc--CCCCCEEECCCCcCCccCHh
Confidence              34455555443  77777777777777555543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=1.2e-22  Score=205.43  Aligned_cols=276  Identities=18%  Similarity=0.126  Sum_probs=195.9

Q ss_pred             CccCCccEEEEeCCCCC-CCCC--CCCCCCccEEEeecCCCCCCCCCC------------------CcccChhhhhC--C
Q 016966           84 STIKHFTSIVLHGIKPN-LLPE--VLECPQLELLFIRGGGRDDPWETS------------------PVTIPDNFFKS--M  140 (379)
Q Consensus        84 ~~~~~l~~L~l~~~~~~-~~~~--~~~~~~L~~L~l~~n~~~~~~~~~------------------~~~~~~~~~~~--l  140 (379)
                      ..++++++|++++|.+. .+|.  +..+++|+.|++++|.+....-..                  ...++..+ ..  +
T Consensus       315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~-~~~~~  393 (768)
T 3rgz_A          315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL-CQNPK  393 (768)
T ss_dssp             GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT-TCSTT
T ss_pred             hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhh-hhccc
Confidence            45667777777777663 5553  346677777777765542110000                  11122221 12  5


Q ss_pred             CceeEEEecCCC----CCccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCc-ccchhhcCCCCCCEEec
Q 016966          141 IEVRVVNLTDMI----LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIV-KLPVEVGELTWLKLLDL  213 (379)
Q Consensus       141 ~~L~~L~l~~~~----lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l  213 (379)
                      ++|++|++++|.    .|..++.+++|++|++++|.+..  |..++.+++|++|++++|.+. .+|..+..+++|++|++
T Consensus       394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  473 (768)
T 3rgz_A          394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL  473 (768)
T ss_dssp             CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence            667777777776    67778888888888888888765  677888888888888888777 67777888888888888


Q ss_pred             cCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC-CCCccc-cccCCcE
Q 016966          214 RDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS-SLPRGL-LLEKLER  291 (379)
Q Consensus       214 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~  291 (379)
                      ++|...+.+|.. ++.+++|+.|++++|.+.+.          .+..++.+++|+.|++++|.+. .+|..+ .+++|+.
T Consensus       474 ~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~----------~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  542 (768)
T 3rgz_A          474 DFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGE----------IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW  542 (768)
T ss_dssp             CSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSC----------CCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCE
T ss_pred             cCCcccCcCCHH-HhcCCCCCEEEccCCccCCc----------CChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCE
Confidence            888777777776 68888888888888887753          4778889999999999999988 778777 7899999


Q ss_pred             EEEEeecccccCcc------------------------------------------------------------------
Q 016966          292 YSIYIRRYFSRKTG------------------------------------------------------------------  305 (379)
Q Consensus       292 L~l~~~~~~~~~~~------------------------------------------------------------------  305 (379)
                      |+++.+...+....                                                                  
T Consensus       543 L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g  622 (768)
T 3rgz_A          543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG  622 (768)
T ss_dssp             EECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred             EECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence            99865543211110                                                                  


Q ss_pred             -------cccceEEEEe-CCcc--cchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccCCC
Q 016966          306 -------IWCRQFRVEL-NNKI--CLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNPA  375 (379)
Q Consensus       306 -------~~~~~~~L~l-~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  375 (379)
                             .+.....|++ .+..  .+|..++.+ ++|+.|++++|.  ....+|..+..  +++|+.|++++|.....+|
T Consensus       623 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l-~~L~~L~Ls~N~--l~g~ip~~l~~--L~~L~~LdLs~N~l~g~ip  697 (768)
T 3rgz_A          623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM-PYLFILNLGHND--ISGSIPDEVGD--LRGLNILDLSSNKLDGRIP  697 (768)
T ss_dssp             ECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC-TTCCEEECCSSC--CCSCCCGGGGG--CTTCCEEECCSSCCEECCC
T ss_pred             cCchhhhccccccEEECcCCcccccCCHHHhcc-ccCCEEeCcCCc--cCCCCChHHhC--CCCCCEEECCCCcccCcCC
Confidence                   0112236777 3433  367778885 999999999998  55588887765  9999999999999986666


Q ss_pred             C
Q 016966          376 E  376 (379)
Q Consensus       376 ~  376 (379)
                      .
T Consensus       698 ~  698 (768)
T 3rgz_A          698 Q  698 (768)
T ss_dssp             G
T ss_pred             h
Confidence            4

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.89  E-value=1.5e-22  Score=184.12  Aligned_cols=216  Identities=20%  Similarity=0.216  Sum_probs=181.5

Q ss_pred             cCCccEEEEeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCC
Q 016966           86 IKHFTSIVLHGIKPNLLPEVL-ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLS  161 (379)
Q Consensus        86 ~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~  161 (379)
                      ..+++.|+++++.+..+|... .+++|+.|++++|.+.        .+|.. |..+++|++|++++|.   +|..++.++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--------~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~  150 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--------ELPDT-MQQFAGLETLTLARNPLRALPASIASLN  150 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--------CCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCT
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--------chhHH-HhccCCCCEEECCCCccccCcHHHhcCc
Confidence            478999999999998888744 8999999999997653        45654 5789999999999998   898999999


Q ss_pred             CCcEEEeecCCCCC--ccccc---------CcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCC
Q 016966          162 NLRTLSLCSCGLPD--ISFVG---------YLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKL  230 (379)
Q Consensus       162 ~L~~L~l~~~~l~~--~~~~~---------~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l  230 (379)
                      +|++|++++|.+..  |..++         .+++|++|++++|.++.+|..++.+++|++|++++|... .+|.. ++.+
T Consensus       151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~-l~~l  228 (328)
T 4fcg_A          151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPA-IHHL  228 (328)
T ss_dssp             TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGG-GGGC
T ss_pred             CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchh-hccC
Confidence            99999999987544  66555         499999999999999999999999999999999997765 56766 7999


Q ss_pred             CCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC-CCCccc-cccCCcEEEEEeecccccCccccc
Q 016966          231 SHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS-SLPRGL-LLEKLERYSIYIRRYFSRKTGIWC  308 (379)
Q Consensus       231 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~  308 (379)
                      ++|+.|++++|.+.+.          .+..++.+++|+.|++++|.+. .+|..+ .+++|+.|+++.+...        
T Consensus       229 ~~L~~L~Ls~n~~~~~----------~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~--------  290 (328)
T 4fcg_A          229 PKLEELDLRGCTALRN----------YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL--------  290 (328)
T ss_dssp             TTCCEEECTTCTTCCB----------CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC--------
T ss_pred             CCCCEEECcCCcchhh----------hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch--------
Confidence            9999999999888764          4678899999999999987766 788776 7899999998544433        


Q ss_pred             ceEEEEeCCcccchHHHHHHhcccceeeccccc
Q 016966          309 RQFRVELNNKICLKDSLIVQLQRIEDLELSELQ  341 (379)
Q Consensus       309 ~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  341 (379)
                                ..+|+++..+ ++|+.+.+..+.
T Consensus       291 ----------~~iP~~l~~L-~~L~~l~l~~~~  312 (328)
T 4fcg_A          291 ----------SRLPSLIAQL-PANCIILVPPHL  312 (328)
T ss_dssp             ----------CCCCGGGGGS-CTTCEEECCGGG
T ss_pred             ----------hhccHHHhhc-cCceEEeCCHHH
Confidence                      3467777775 999999888765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.89  E-value=8.6e-23  Score=206.32  Aligned_cols=255  Identities=13%  Similarity=0.138  Sum_probs=184.9

Q ss_pred             CCC-CCCCCCccEEEeecCCCCCC--CCCCCc--------ccChhh-hhCCCceeEEEecCCC----CCccccCCCCCcE
Q 016966          102 LPE-VLECPQLELLFIRGGGRDDP--WETSPV--------TIPDNF-FKSMIEVRVVNLTDMI----LPSSLGLLSNLRT  165 (379)
Q Consensus       102 ~~~-~~~~~~L~~L~l~~n~~~~~--~~~~~~--------~~~~~~-~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~  165 (379)
                      +|. +..+++|+.|++++|.+...  ...+..        .+|+.+ |.++++|++|++++|.    +|..++++++|++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            444 34889999999999876430  000000        267665 4589999999999987    8889999999999


Q ss_pred             EEeecCC-CCC---cccccCcC-------CCcEEEeeCCcCcccch--hhcCCCCCCEEeccCCCCCcccChhhhCCCCC
Q 016966          166 LSLCSCG-LPD---ISFVGYLK-------KLEILCLRGSDIVKLPV--EVGELTWLKLLDLRDCCFLKVIPPNILSKLSH  232 (379)
Q Consensus       166 L~l~~~~-l~~---~~~~~~l~-------~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~  232 (379)
                      |++++|. ++.   |..+++++       +|++|++++|.++.+|.  .++++++|++|++++|... .+| . ++.+++
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~-~~~L~~  596 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-A-FGTNVK  596 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-C-CCTTSE
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-h-hcCCCc
Confidence            9999998 773   56666655       99999999999999998  8999999999999998765 888 4 899999


Q ss_pred             CcEEEecCCCCcChhhhhhcccccchHhhcCCCC-CcEEEeeccCCCCCCccc-c--ccCCcEEEEEeecccccCccccc
Q 016966          233 LEELYIGRESFVDWEEEVEGVKNASLEELKHLPN-LTSLEVHVRDVSSLPRGL-L--LEKLERYSIYIRRYFSRKTGIWC  308 (379)
Q Consensus       233 L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~-~--~~~L~~L~l~~~~~~~~~~~~~~  308 (379)
                      |+.|++++|.+..           ++..+..+++ |+.|++++|.+..+|..+ .  .++|+.|+++.+...+ ..+.++
T Consensus       597 L~~L~Ls~N~l~~-----------lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g-~ip~l~  664 (876)
T 4ecn_A          597 LTDLKLDYNQIEE-----------IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNIS  664 (876)
T ss_dssp             ESEEECCSSCCSC-----------CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTT-TSSSCS
T ss_pred             ceEEECcCCcccc-----------chHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCC-ccccch
Confidence            9999999999874           5677888888 999999999999888765 2  2458888886655432 112222


Q ss_pred             ---------ceEEEEe--CCcccchHHHHHHhcccceeeccccccccccccccccccc------cCCCCcEEEecCCCCc
Q 016966          309 ---------RQFRVEL--NNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKV------GSSHLKRLRLEGSDLA  371 (379)
Q Consensus       309 ---------~~~~L~l--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~------~~~~L~~L~l~~c~~l  371 (379)
                               +...|.+  +....+|..+...+++|+.|++++|.   +..+|...+..      .+++|+.|++++|...
T Consensus       665 ~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~---L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~  741 (876)
T 4ecn_A          665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL---MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT  741 (876)
T ss_dssp             SCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC---CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC
T ss_pred             hhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc---CCccChHHhccccccccccCCccEEECCCCCCc
Confidence                     4456777  33344666665434777777777776   55666544321      1226666666666555


Q ss_pred             cCC
Q 016966          372 LNP  374 (379)
Q Consensus       372 ~~~  374 (379)
                      .+|
T Consensus       742 ~lp  744 (876)
T 4ecn_A          742 SLS  744 (876)
T ss_dssp             CCC
T ss_pred             cch
Confidence            444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.89  E-value=2.1e-21  Score=185.78  Aligned_cols=189  Identities=24%  Similarity=0.245  Sum_probs=153.4

Q ss_pred             cEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcE
Q 016966           90 TSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRT  165 (379)
Q Consensus        90 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~  165 (379)
                      +.+..+++.+..+|... .++++.|++++|.+        ..+++..|.++++|++|++++|.    .|..+..+++|++
T Consensus        14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l--------~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~   84 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRI--------KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRT   84 (477)
T ss_dssp             TEEECCSCCCSSCCSCC-CTTCSEEECCSSCC--------CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CEEEeCCCCcCcCCCCC-CCCCcEEECCCCcc--------ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCE
Confidence            46667777777777633 46899999999764        44555668999999999999998    5788999999999


Q ss_pred             EEeecCCCCC-c-ccccCcCCCcEEEeeCCcCccc-chhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCC
Q 016966          166 LSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKL-PVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRES  242 (379)
Q Consensus       166 L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  242 (379)
                      |++++|.+.. + ..+.++++|++|++++|.+..+ |..+..+++|++|++++|......+.. ++.+++|+.|++.+|.
T Consensus        85 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~  163 (477)
T 2id5_A           85 LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA-FSGLNSLEQLTLEKCN  163 (477)
T ss_dssp             EECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS-STTCTTCCEEEEESCC
T ss_pred             EECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhh-ccCCCCCCEEECCCCc
Confidence            9999999988 5 4578999999999999999866 457889999999999997765555544 8999999999999999


Q ss_pred             CcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCcc-c-cccCCcEEEEEeec
Q 016966          243 FVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRG-L-LLEKLERYSIYIRR  298 (379)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~  298 (379)
                      +....          ...+..+++|+.|+++.|.+..++.. + .+++|+.|+++.+.
T Consensus       164 l~~~~----------~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~  211 (477)
T 2id5_A          164 LTSIP----------TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP  211 (477)
T ss_dssp             CSSCC----------HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred             CcccC----------hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence            88753          46688889999999998888865543 2 57778888776543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.89  E-value=1.5e-21  Score=192.43  Aligned_cols=137  Identities=22%  Similarity=0.159  Sum_probs=113.4

Q ss_pred             cCcCCCCCCccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-
Q 016966           76 GCREWSDGSTIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-  152 (379)
Q Consensus        76 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-  152 (379)
                      ++...+. ...+++++|++++|.+..++.  +..+++|+.|++++|.        ...+++..|.++++|++|++++|. 
T Consensus        22 ~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--------l~~i~~~~~~~l~~L~~L~Ls~n~l   92 (606)
T 3vq2_A           22 KLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE--------IETIEDKAWHGLHHLSNLILTGNPI   92 (606)
T ss_dssp             CCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC--------CCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             CcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc--------ccccCHHHhhchhhcCEeECCCCcc
Confidence            3444444 345889999999999976664  5589999999999965        445666667899999999999998 


Q ss_pred             ---CCccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCc--ccchhhcCCCCCCEEeccCCCCCcc
Q 016966          153 ---LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIV--KLPVEVGELTWLKLLDLRDCCFLKV  221 (379)
Q Consensus       153 ---lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~  221 (379)
                         .|..++.+++|++|++++|.+..  +..++++++|++|++++|.+.  .+|..++++++|++|++++|.....
T Consensus        93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A           93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred             cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence               47889999999999999999887  477999999999999999887  5788999999999999999765443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.88  E-value=9.5e-22  Score=193.81  Aligned_cols=212  Identities=17%  Similarity=0.141  Sum_probs=154.7

Q ss_pred             CcCCCCCCccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--
Q 016966           77 CREWSDGSTIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--  152 (379)
Q Consensus        77 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--  152 (379)
                      +...+. ...+.+++|++++|.+..+++  +..+++|++|++++|.+        ..+++..|.++++|++|++++|.  
T Consensus        24 l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--------~~~~~~~~~~l~~L~~L~Ls~n~l~   94 (606)
T 3t6q_A           24 LNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI--------YWIHEDTFQSQHRLDTLVLTANPLI   94 (606)
T ss_dssp             CSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCC--------CEECTTTTTTCTTCCEEECTTCCCS
T ss_pred             cccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCcc--------ceeChhhccCccccCeeeCCCCccc
Confidence            334443 345689999999999966643  45899999999999654        34555567889999999999997  


Q ss_pred             --CCccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccc-hhhcCCCCCCEEeccCCCCCcccChhhh
Q 016966          153 --LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLP-VEVGELTWLKLLDLRDCCFLKVIPPNIL  227 (379)
Q Consensus       153 --lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l  227 (379)
                        .|..++.+++|++|++++|.+..  +..++.+++|++|++++|.+..++ ..+..+++|++|++++|......+. .+
T Consensus        95 ~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~  173 (606)
T 3t6q_A           95 FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE-DM  173 (606)
T ss_dssp             EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH-HH
T ss_pred             ccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh-hh
Confidence              57788999999999999999888  577889999999999999888663 3445589999999998765544344 37


Q ss_pred             CCCCCCc--EEEecCCCCcChhhhhhcc----------------------------------------------------
Q 016966          228 SKLSHLE--ELYIGRESFVDWEEEVEGV----------------------------------------------------  253 (379)
Q Consensus       228 ~~l~~L~--~L~l~~~~~~~~~~~~~~~----------------------------------------------------  253 (379)
                      +.+++|+  .|++++|.+....+...+.                                                    
T Consensus       174 ~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~  253 (606)
T 3t6q_A          174 SSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE  253 (606)
T ss_dssp             HTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG
T ss_pred             hhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhc
Confidence            8888888  7888887766543221110                                                    


Q ss_pred             ------------cc-cchHhhcCCCCCcEEEeeccCCCCCCccc-cccCCcEEEEEeec
Q 016966          254 ------------KN-ASLEELKHLPNLTSLEVHVRDVSSLPRGL-LLEKLERYSIYIRR  298 (379)
Q Consensus       254 ------------~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~  298 (379)
                                  .. ..+..++.+++|+.|++++|.++.+|..+ .+++|+.|+++.+.
T Consensus       254 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~  312 (606)
T 3t6q_A          254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK  312 (606)
T ss_dssp             SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCC
T ss_pred             CceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCC
Confidence                        00 01223667788888888888888777766 57778888775443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.88  E-value=7.7e-22  Score=187.54  Aligned_cols=238  Identities=20%  Similarity=0.225  Sum_probs=186.0

Q ss_pred             ccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCc
Q 016966           89 FTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLR  164 (379)
Q Consensus        89 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~  164 (379)
                      .+.+...+..+..+|... .++++.|++++|.+        ..+++..|.++++|++|++++|.    .+..+..+++|+
T Consensus        56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i--------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  126 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNI--------QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLN  126 (452)
T ss_dssp             SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCC--------CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CcEEEECCCCcCccCCCC-CCCccEEECcCCcC--------ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCC
Confidence            456777777777777532 36899999999654        44555667899999999999998    557788999999


Q ss_pred             EEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCC
Q 016966          165 TLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE  241 (379)
Q Consensus       165 ~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  241 (379)
                      +|++++|.+.. + ..+..+++|++|++++|.+..+|. .+.++++|++|++++|+....++...+..+++|+.|++++|
T Consensus       127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n  206 (452)
T 3zyi_A          127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC  206 (452)
T ss_dssp             EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence            99999999888 4 558889999999999999998875 67889999999999988888888777889999999999999


Q ss_pred             CCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCc-cc-cccCCcEEEEEeecccccCcccccceEEEEeCCcc
Q 016966          242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPR-GL-LLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKI  319 (379)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~  319 (379)
                      .+...            +.+..+++|+.|++++|.+..++. .+ .+++|+.|+++.+...                  .
T Consensus       207 ~l~~~------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------~  256 (452)
T 3zyi_A          207 NIKDM------------PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS------------------L  256 (452)
T ss_dssp             CCSSC------------CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC------------------E
T ss_pred             ccccc------------ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc------------------e
Confidence            88763            357788999999999999986643 44 6888999888443332                  0


Q ss_pred             cchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCC
Q 016966          320 CLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDL  370 (379)
Q Consensus       320 ~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~  370 (379)
                      ..+..+.. +++|+.|++++|.   ++.++...+ ..+++|+.|++++|+.
T Consensus       257 ~~~~~~~~-l~~L~~L~L~~N~---l~~~~~~~~-~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          257 IERNAFDG-LASLVELNLAHNN---LSSLPHDLF-TPLRYLVELHLHHNPW  302 (452)
T ss_dssp             ECTTTTTT-CTTCCEEECCSSC---CSCCCTTSS-TTCTTCCEEECCSSCE
T ss_pred             ECHHHhcC-CCCCCEEECCCCc---CCccChHHh-ccccCCCEEEccCCCc
Confidence            11233344 4889999999997   777776543 3588999999998874

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=1e-21  Score=192.99  Aligned_cols=254  Identities=17%  Similarity=0.164  Sum_probs=153.0

Q ss_pred             cCCccEEEEeCCCCCCCCCC--CCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccC
Q 016966           86 IKHFTSIVLHGIKPNLLPEV--LECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGL  159 (379)
Q Consensus        86 ~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~  159 (379)
                      +.+++.+++.++.+..+|..  ..+++|+.|++++|.+        ..+++..|..+++|++|++++|.    .|..++.
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  121 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI--------EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN  121 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC--------CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC--------CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence            34556666666665555542  2556666666666432        23343345566666666666665    3334566


Q ss_pred             CCCCcEEEeecCCCCC-ccc-ccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCC----
Q 016966          160 LSNLRTLSLCSCGLPD-ISF-VGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSH----  232 (379)
Q Consensus       160 l~~L~~L~l~~~~l~~-~~~-~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~----  232 (379)
                      +++|++|++++|.+.. |+. ++.+++|++|++++|.+..+++ .++.+++|++|++++|.... ++   ++.+++    
T Consensus       122 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~---~~~l~~L~~L  197 (597)
T 3oja_B          122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHA  197 (597)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC---GGGCTTCSEE
T ss_pred             CCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC---hhhhhhhhhh
Confidence            6666666666666655 333 3566666666666666655443 45566666666666654322 22   122233    


Q ss_pred             ------------------------------------CcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccC
Q 016966          233 ------------------------------------LEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRD  276 (379)
Q Consensus       233 ------------------------------------L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  276 (379)
                                                          |+.|++++|.+.+            +..++.+++|+.|++++|.
T Consensus       198 ~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~------------~~~l~~l~~L~~L~Ls~N~  265 (597)
T 3oja_B          198 NVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD------------TAWLLNYPGLVEVDLSYNE  265 (597)
T ss_dssp             ECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC------------CGGGGGCTTCSEEECCSSC
T ss_pred             hcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC------------ChhhccCCCCCEEECCCCc
Confidence                                                3333333333332            3567788889999998888


Q ss_pred             CCCC-Cccc-cccCCcEEEEEeecccc--cCcccccceEEEEe--CCcccchHHHHHHhcccceeecccccccccccccc
Q 016966          277 VSSL-PRGL-LLEKLERYSIYIRRYFS--RKTGIWCRQFRVEL--NNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRN  350 (379)
Q Consensus       277 ~~~~-~~~~-~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~l--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~  350 (379)
                      +..+ |..+ .+++|+.|+++.+....  .....+++...|++  +....+|.++..+ ++|+.|++++|.   +..++ 
T Consensus       266 l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l-~~L~~L~L~~N~---l~~~~-  340 (597)
T 3oja_B          266 LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQF-DRLENLYLDHNS---IVTLK-  340 (597)
T ss_dssp             CCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHH-TTCSEEECCSSC---CCCCC-
T ss_pred             cCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccC-CCCCEEECCCCC---CCCcC-
Confidence            8854 4444 67888888885544331  12233556668888  4444577777774 999999999997   66654 


Q ss_pred             ccccccCCCCcEEEecCCCCc
Q 016966          351 ELVKVGSSHLKRLRLEGSDLA  371 (379)
Q Consensus       351 ~~~~~~~~~L~~L~l~~c~~l  371 (379)
                         ...+++|++|++++|+..
T Consensus       341 ---~~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          341 ---LSTHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             ---CCTTCCCSEEECCSSCEE
T ss_pred             ---hhhcCCCCEEEeeCCCCC
Confidence               234899999999998853

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.88  E-value=4e-22  Score=201.50  Aligned_cols=278  Identities=13%  Similarity=0.141  Sum_probs=190.6

Q ss_pred             ccCCccEEEEeCCCC-CCCCC-CCCCCCccEEEeecCC-CCCCCCCCCc-ccChhh------hhCCCceeEEEecCCC--
Q 016966           85 TIKHFTSIVLHGIKP-NLLPE-VLECPQLELLFIRGGG-RDDPWETSPV-TIPDNF------FKSMIEVRVVNLTDMI--  152 (379)
Q Consensus        85 ~~~~l~~L~l~~~~~-~~~~~-~~~~~~L~~L~l~~n~-~~~~~~~~~~-~~~~~~------~~~l~~L~~L~l~~~~--  152 (379)
                      .++++++|++++|.+ ..+|. +..+++|+.|++++|. +       .. .+|..+      +..+++|++|++++|.  
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l-------sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI-------SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS-------CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc-------ccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            788999999999986 66775 4489999999999975 4       33 355433      2244589999999888  


Q ss_pred             -CCc--cccCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCC-CCEEeccCCCCCcccChhhhC
Q 016966          153 -LPS--SLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTW-LKLLDLRDCCFLKVIPPNILS  228 (379)
Q Consensus       153 -lp~--~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~-L~~L~l~~~~~~~~~~~~~l~  228 (379)
                       +|.  .++.+++|++|++++|.+...+.++.+++|++|++++|.+..+|..+..+++ |++|++++|... .+|.. ++
T Consensus       562 ~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~-~~  639 (876)
T 4ecn_A          562 EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNI-FN  639 (876)
T ss_dssp             BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSC-CC
T ss_pred             ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchh-hh
Confidence             777  7888999999999998887733888888999999999888888888888888 899988887654 66654 45


Q ss_pred             CCCC--CcEEEecCCCCcChhhhhhc------------------ccccchHhh-cCCCCCcEEEeeccCCCCCCcccc--
Q 016966          229 KLSH--LEELYIGRESFVDWEEEVEG------------------VKNASLEEL-KHLPNLTSLEVHVRDVSSLPRGLL--  285 (379)
Q Consensus       229 ~l~~--L~~L~l~~~~~~~~~~~~~~------------------~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~--  285 (379)
                      .++.  |+.|++++|.+.+..+....                  ....++..+ ..+++|+.|++++|.+..+|....  
T Consensus       640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~  719 (876)
T 4ecn_A          640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP  719 (876)
T ss_dssp             TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC
T ss_pred             ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcc
Confidence            5443  77777777766543211100                  111133333 467778888888877777776541  


Q ss_pred             -------ccCCcEEEEEeecccc--cCcc--cccceEEEEe--CCcccchHHHHHHhcccceeeccc------ccccccc
Q 016966          286 -------LEKLERYSIYIRRYFS--RKTG--IWCRQFRVEL--NNKICLKDSLIVQLQRIEDLELSE------LQEQDVD  346 (379)
Q Consensus       286 -------~~~L~~L~l~~~~~~~--~~~~--~~~~~~~L~l--~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~l~  346 (379)
                             +++|+.|+++.+....  ....  .+++...|++  +....+|..+..+ ++|+.|++++      |.  ...
T Consensus       720 ~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L-~~L~~L~Ls~N~~ls~N~--l~~  796 (876)
T 4ecn_A          720 KDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNS-SQLKAFGIRHQRDAEGNR--ILR  796 (876)
T ss_dssp             TTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGC-TTCCEEECCCCBCTTCCB--CCC
T ss_pred             ccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcC-CCCCEEECCCCCCccccc--ccc
Confidence                   1277888775554431  1111  3345557777  3333466666664 8888888866      44  345


Q ss_pred             ccccccccccCCCCcEEEecCCCCccCCCC
Q 016966          347 YFRNELVKVGSSHLKRLRLEGSDLALNPAE  376 (379)
Q Consensus       347 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  376 (379)
                      .+|..+..  +++|+.|++++|....+|..
T Consensus       797 ~ip~~l~~--L~~L~~L~Ls~N~L~~Ip~~  824 (876)
T 4ecn_A          797 QWPTGITT--CPSLIQLQIGSNDIRKVDEK  824 (876)
T ss_dssp             CCCTTGGG--CSSCCEEECCSSCCCBCCSC
T ss_pred             cChHHHhc--CCCCCEEECCCCCCCccCHh
Confidence            56655543  88888888888888655554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.88  E-value=1e-21  Score=183.14  Aligned_cols=254  Identities=14%  Similarity=0.130  Sum_probs=166.5

Q ss_pred             CCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcEEEeecCCCCC--cccc
Q 016966          106 LECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRTLSLCSCGLPD--ISFV  179 (379)
Q Consensus       106 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~L~l~~~~l~~--~~~~  179 (379)
                      ..+++++.|.+.+|.        ...+|..+|..+++|++|+++++.    .+..+..+++|++|++++|.+..  +..+
T Consensus        42 ~~l~~l~~l~l~~~~--------l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  113 (390)
T 3o6n_A           42 ITLNNQKIVTFKNST--------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF  113 (390)
T ss_dssp             GGGCCCSEEEEESCE--------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             cccCCceEEEecCCc--------hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh
Confidence            367899999999954        567888889999999999999998    44588999999999999999988  4668


Q ss_pred             cCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhccccc--
Q 016966          180 GYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNA--  256 (379)
Q Consensus       180 ~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~--  256 (379)
                      +.+++|++|++++|.++.+|.. +..+++|++|++++|......+. .++.+++|+.|++++|.+.............  
T Consensus       114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~  192 (390)
T 3o6n_A          114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN  192 (390)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEE
T ss_pred             cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChh-hccCCCCCCEEECCCCcCCccccccccccceee
Confidence            9999999999999999999976 48999999999999876554444 4799999999999999987643111000000  


Q ss_pred             ----chHhhcCCC---------------------CCcEEEeeccCCCCCCccccccCCcEEEEEeecccc---cCccccc
Q 016966          257 ----SLEELKHLP---------------------NLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFS---RKTGIWC  308 (379)
Q Consensus       257 ----~~~~l~~l~---------------------~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~  308 (379)
                          ....+...+                     +|+.|++++|.++..+....+++|+.|+++.+....   ..+..++
T Consensus       193 l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  272 (390)
T 3o6n_A          193 VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ  272 (390)
T ss_dssp             CCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred             cccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccc
Confidence                000011112                     344444444444433322245556666654433221   1122333


Q ss_pred             ceEEEEe-CC-cccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccCC
Q 016966          309 RQFRVEL-NN-KICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNP  374 (379)
Q Consensus       309 ~~~~L~l-~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  374 (379)
                      +...|.+ ++ ...++..... +++|+.|++++|.   ++.++..+..  +++|++|++++|+....+
T Consensus       273 ~L~~L~L~~n~l~~~~~~~~~-l~~L~~L~L~~n~---l~~~~~~~~~--l~~L~~L~L~~N~i~~~~  334 (390)
T 3o6n_A          273 RLERLYISNNRLVALNLYGQP-IPTLKVLDLSHNH---LLHVERNQPQ--FDRLENLYLDHNSIVTLK  334 (390)
T ss_dssp             SCCEEECCSSCCCEEECSSSC-CTTCCEEECCSSC---CCCCGGGHHH--HTTCSEEECCSSCCCCCC
T ss_pred             cCCEEECCCCcCcccCcccCC-CCCCCEEECCCCc---ceecCccccc--cCcCCEEECCCCccceeC
Confidence            4445555 22 2223333333 3666666666665   5555554432  666777777766665543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.88  E-value=4.1e-21  Score=183.25  Aligned_cols=270  Identities=20%  Similarity=0.244  Sum_probs=140.8

Q ss_pred             CCccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CC-----
Q 016966           83 GSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LP-----  154 (379)
Q Consensus        83 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp-----  154 (379)
                      ...++++++|++++|.+..++.+..+++|++|++++|.+.+        +++  +..+++|++|++++|.   ++     
T Consensus        86 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~--------~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l  155 (466)
T 1o6v_A           86 LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD--------IDP--LKNLTNLNRLELSSNTISDISALSGL  155 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--------CGG--GTTCTTCSEEEEEEEEECCCGGGTTC
T ss_pred             hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCC--------ChH--HcCCCCCCEEECCCCccCCChhhccC
Confidence            44556667777766666555555566666666666654432        221  3445555555554443   11     


Q ss_pred             ---------------ccccCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCC
Q 016966          155 ---------------SSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFL  219 (379)
Q Consensus       155 ---------------~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~  219 (379)
                                     ..+..+++|++|++++|.+..++.+..+++|++|++++|.+..++. ++.+++|++|++++|...
T Consensus       156 ~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~  234 (466)
T 1o6v_A          156 TSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLK  234 (466)
T ss_dssp             TTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred             CcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcc
Confidence                           1245556666666666666554446666666666666666655543 555566666666654432


Q ss_pred             cccChhhhCCCCCCcEEEecCCCCcChhhhhhc------------ccccchHhhcCCCCCcEEEeeccCCCCCCcccccc
Q 016966          220 KVIPPNILSKLSHLEELYIGRESFVDWEEEVEG------------VKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLE  287 (379)
Q Consensus       220 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  287 (379)
                       .++.  +..+++|+.|++++|.+....+ ..+            .....+ .+..+++|+.|++++|.+..++....++
T Consensus       235 -~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~l~  309 (466)
T 1o6v_A          235 -DIGT--LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQLEDISPISNLK  309 (466)
T ss_dssp             -CCGG--GGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCSCCGGGGGCT
T ss_pred             -cchh--hhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCccc-cccCCCccCeEEcCCCcccCchhhcCCC
Confidence             2222  4455555555555555543220 000            000011 1455556666666666555544433556


Q ss_pred             CCcEEEEEeecccccC-cccccceEEEEe-CCcccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEe
Q 016966          288 KLERYSIYIRRYFSRK-TGIWCRQFRVEL-NNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRL  365 (379)
Q Consensus       288 ~L~~L~l~~~~~~~~~-~~~~~~~~~L~l-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l  365 (379)
                      +|+.|+++.+...... ...+++...|.+ ++.....+.+..+ ++|+.|++++|.   +..++. +  ..+++|+.|++
T Consensus       310 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l-~~L~~L~l~~n~---l~~~~~-~--~~l~~L~~L~l  382 (466)
T 1o6v_A          310 NLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANL-TNINWLSAGHNQ---ISDLTP-L--ANLTRITQLGL  382 (466)
T ss_dssp             TCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTC-TTCCEEECCSSC---CCBCGG-G--TTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCchhhccCccCCEeECCCCccCCchhhccC-CCCCEEeCCCCc---cCccch-h--hcCCCCCEEec
Confidence            6666666444332111 223344446666 3333333344443 677777777776   444333 2  24777777777


Q ss_pred             cCCCCccCCC
Q 016966          366 EGSDLALNPA  375 (379)
Q Consensus       366 ~~c~~l~~~~  375 (379)
                      ++|+....|.
T Consensus       383 ~~n~~~~~p~  392 (466)
T 1o6v_A          383 NDQAWTNAPV  392 (466)
T ss_dssp             CCEEEECCCB
T ss_pred             cCCcccCCch
Confidence            7777666543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.88  E-value=1.7e-21  Score=184.47  Aligned_cols=238  Identities=21%  Similarity=0.270  Sum_probs=184.7

Q ss_pred             ccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCc
Q 016966           89 FTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLR  164 (379)
Q Consensus        89 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~  164 (379)
                      .+.+...+..+..+|... .++++.|++++|.+        ..++...|.++++|++|++++|.    .+..+..+++|+
T Consensus        45 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i--------~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~  115 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGI-STNTRLLNLHENQI--------QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLN  115 (440)
T ss_dssp             SCEEECCSCCCSSCCSCC-CTTCSEEECCSCCC--------CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcC--------CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCC
Confidence            456777777777777533 36889999999654        44555667889999999999988    456788899999


Q ss_pred             EEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCC
Q 016966          165 TLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE  241 (379)
Q Consensus       165 ~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  241 (379)
                      +|++++|.++. + ..+..+++|++|++++|.+..+|. .+..+++|++|++++|+....++...+..+++|+.|++++|
T Consensus       116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n  195 (440)
T 3zyj_A          116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC  195 (440)
T ss_dssp             EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred             EEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence            99999999888 4 468889999999999999998875 67889999999999988888888776889999999999999


Q ss_pred             CCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCC-ccc-cccCCcEEEEEeecccccCcccccceEEEEeCCcc
Q 016966          242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLP-RGL-LLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKI  319 (379)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~  319 (379)
                      .+...            +.+..+++|+.|++++|.++.++ ..+ .+++|+.|++..+....                  
T Consensus       196 ~l~~~------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------  245 (440)
T 3zyj_A          196 NLREI------------PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV------------------  245 (440)
T ss_dssp             CCSSC------------CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE------------------
T ss_pred             cCccc------------cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE------------------
Confidence            88763            35778889999999999988664 344 68889998884433320                  


Q ss_pred             cchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCC
Q 016966          320 CLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDL  370 (379)
Q Consensus       320 ~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~  370 (379)
                      ..+..+.. +++|+.|+|++|.   ++.++...+ ..+++|+.|++++|+.
T Consensus       246 ~~~~~~~~-l~~L~~L~L~~N~---l~~~~~~~~-~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          246 IERNAFDN-LQSLVEINLAHNN---LTLLPHDLF-TPLHHLERIHLHHNPW  291 (440)
T ss_dssp             ECTTSSTT-CTTCCEEECTTSC---CCCCCTTTT-SSCTTCCEEECCSSCE
T ss_pred             EChhhhcC-CCCCCEEECCCCC---CCccChhHh-ccccCCCEEEcCCCCc
Confidence            01222333 4889999999987   777776543 3588999999988874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.88  E-value=3.4e-21  Score=183.81  Aligned_cols=270  Identities=20%  Similarity=0.200  Sum_probs=140.3

Q ss_pred             CCCCccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccc
Q 016966           81 SDGSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSL  157 (379)
Q Consensus        81 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i  157 (379)
                      +....++++++|++++|.+..++.+..+++|+.|.+++|.+..        +++  +..+++|++|++++|.   ++ .+
T Consensus        62 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~--------~~~--~~~l~~L~~L~L~~n~l~~~~-~~  130 (466)
T 1o6v_A           62 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--------ITP--LANLTNLTGLTLFNNQITDID-PL  130 (466)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--------CGG--GTTCTTCCEEECCSSCCCCCG-GG
T ss_pred             cchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCcccc--------Chh--hcCCCCCCEEECCCCCCCCCh-HH
Confidence            3345566777777777777666665577777777777755432        232  5667777777777776   33 36


Q ss_pred             cCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEE
Q 016966          158 GLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELY  237 (379)
Q Consensus       158 ~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  237 (379)
                      ..+++|++|++++|.+...+.++.+++|++|++.+ .+..++ .+..+++|++|++++|.. ..++.  +..+++|++|+
T Consensus       131 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~-~~~~~~-~~~~l~~L~~L~l~~n~l-~~~~~--l~~l~~L~~L~  205 (466)
T 1o6v_A          131 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTDLK-PLANLTTLERLDISSNKV-SDISV--LAKLTNLESLI  205 (466)
T ss_dssp             TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEE-SCCCCG-GGTTCTTCCEEECCSSCC-CCCGG--GGGCTTCSEEE
T ss_pred             cCCCCCCEEECCCCccCCChhhccCCcccEeecCC-cccCch-hhccCCCCCEEECcCCcC-CCChh--hccCCCCCEEE
Confidence            77777777777777666533344444444444432 222222 244555555555555432 22221  34455555555


Q ss_pred             ecCCCCcChhhhhh----------cccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeeccccc-Cccc
Q 016966          238 IGRESFVDWEEEVE----------GVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSR-KTGI  306 (379)
Q Consensus       238 l~~~~~~~~~~~~~----------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~  306 (379)
                      +++|.+.+..+...          +..-.....+..+++|+.|++++|.+..++....+++|+.|+++.+..... ....
T Consensus       206 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  285 (466)
T 1o6v_A          206 ATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG  285 (466)
T ss_dssp             CCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTT
T ss_pred             ecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccC
Confidence            55554443220000          000000123455566666666666655544422456666666644332211 1223


Q ss_pred             ccceEEEEe-CCcccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccC
Q 016966          307 WCRQFRVEL-NNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALN  373 (379)
Q Consensus       307 ~~~~~~L~l-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~  373 (379)
                      +++...|.+ .+.......+.. +++|+.|++++|.   +..++. +  ..+++|++|++++|+....
T Consensus       286 l~~L~~L~L~~n~l~~~~~~~~-l~~L~~L~L~~n~---l~~~~~-~--~~l~~L~~L~l~~n~l~~~  346 (466)
T 1o6v_A          286 LTALTNLELNENQLEDISPISN-LKNLTYLTLYFNN---ISDISP-V--SSLTKLQRLFFYNNKVSDV  346 (466)
T ss_dssp             CTTCSEEECCSSCCSCCGGGGG-CTTCSEEECCSSC---CSCCGG-G--GGCTTCCEEECCSSCCCCC
T ss_pred             CCccCeEEcCCCcccCchhhcC-CCCCCEEECcCCc---CCCchh-h--ccCccCCEeECCCCccCCc
Confidence            344446666 333332222444 3777777777776   444433 2  2477777777777765543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.88  E-value=1.7e-21  Score=188.43  Aligned_cols=155  Identities=14%  Similarity=0.177  Sum_probs=110.2

Q ss_pred             cCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCC-CC
Q 016966          203 GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSS-LP  281 (379)
Q Consensus       203 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~  281 (379)
                      ..+++|++|++++|...+..|.. ++.+++|+.|++++|.+.+.+        ..+..++.+++|+.|++++|.+.. +|
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~--------~~~~~~~~l~~L~~L~Ls~N~l~~~l~  391 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKELS--------KIAEMTTQMKSLQQLDISQNSVSYDEK  391 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTT-CCCCSSCCEEECCSSCCCBHH--------HHHHHHTTCTTCCEEECCSSCCBCCGG
T ss_pred             hhCCcccEEEeECCccChhhhhh-hccCCCCCEEEccCCccCccc--------cchHHHhhCCCCCEEECCCCcCCcccc
Confidence            56677777888777766656655 677888888888888777532        135668888899999999888886 77


Q ss_pred             ccc--cccCCcEEEEEeecccccCcccc-cceEEEEe--CCcccchHHHHHHhcccceeecccccccccccccccccccc
Q 016966          282 RGL--LLEKLERYSIYIRRYFSRKTGIW-CRQFRVEL--NNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVG  356 (379)
Q Consensus       282 ~~~--~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~l--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~  356 (379)
                      ...  .+++|+.|+++.+.........+ ++...|++  +....+|..+.. +++|++|++++|.   ++.+|.... ..
T Consensus       392 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~-l~~L~~L~L~~N~---l~~l~~~~~-~~  466 (520)
T 2z7x_B          392 KGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVK-LEALQELNVASNQ---LKSVPDGIF-DR  466 (520)
T ss_dssp             GCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGG-CTTCCEEECCSSC---CCCCCTTTT-TT
T ss_pred             cchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhc-CCCCCEEECCCCc---CCccCHHHh-cc
Confidence            653  57888998886655433333333 35557888  444457777775 4889999999887   777777622 24


Q ss_pred             CCCCcEEEecCCCCc
Q 016966          357 SSHLKRLRLEGSDLA  371 (379)
Q Consensus       357 ~~~L~~L~l~~c~~l  371 (379)
                      +++|++|++++|+..
T Consensus       467 l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          467 LTSLQKIWLHTNPWD  481 (520)
T ss_dssp             CTTCCEEECCSSCBC
T ss_pred             CCcccEEECcCCCCc
Confidence            888999999888764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.88  E-value=2.7e-22  Score=181.27  Aligned_cols=226  Identities=13%  Similarity=0.160  Sum_probs=183.5

Q ss_pred             CCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecC-CC----CCccccCCCCCcEEEeecCCCCC--cccccC
Q 016966          109 PQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTD-MI----LPSSLGLLSNLRTLSLCSCGLPD--ISFVGY  181 (379)
Q Consensus       109 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~----lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~  181 (379)
                      .+++.|++.+|.+..     ...+|.. |.++++|++|++++ +.    +|..++.+++|++|++++|.+..  |..+.+
T Consensus        50 ~~l~~L~L~~~~l~~-----~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  123 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPK-----PYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ  123 (313)
T ss_dssp             CCEEEEEEECCCCSS-----CEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred             ceEEEEECCCCCccC-----CcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC
Confidence            579999999976632     1146654 58899999999995 65    88899999999999999999985  788999


Q ss_pred             cCCCcEEEeeCCcCc-ccchhhcCCCCCCEEeccCCCCCcccChhhhCCCC-CCcEEEecCCCCcChhhhhhcccccchH
Q 016966          182 LKKLEILCLRGSDIV-KLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLS-HLEELYIGRESFVDWEEEVEGVKNASLE  259 (379)
Q Consensus       182 l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~  259 (379)
                      +++|++|++++|.++ .+|..+..+++|++|++++|...+.+|.. ++.++ +|+.|++++|.+.+.          .+.
T Consensus       124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~----------~~~  192 (313)
T 1ogq_A          124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGK----------IPP  192 (313)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEE----------CCG
T ss_pred             CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeecc----------CCh
Confidence            999999999999998 78889999999999999998887788887 78888 999999999988743          466


Q ss_pred             hhcCCCCCcEEEeeccCCC-CCCccc-cccCCcEEEEEeecccccCcccccceEEEEeCCcccchHHHHHHhcccceeec
Q 016966          260 ELKHLPNLTSLEVHVRDVS-SLPRGL-LLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLEL  337 (379)
Q Consensus       260 ~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l  337 (379)
                      .++.++ |+.|++++|.+. ..|..+ .+++|+.|+++.+...                   ..++.+.. +++|++|++
T Consensus       193 ~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------------~~~~~~~~-l~~L~~L~L  251 (313)
T 1ogq_A          193 TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA-------------------FDLGKVGL-SKNLNGLDL  251 (313)
T ss_dssp             GGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC-------------------CBGGGCCC-CTTCCEEEC
T ss_pred             HHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee-------------------eecCcccc-cCCCCEEEC
Confidence            777776 999999999988 455444 6899999998544432                   11111223 489999999


Q ss_pred             cccccccccccccccccccCCCCcEEEecCCCCccCCCC
Q 016966          338 SELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNPAE  376 (379)
Q Consensus       338 ~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  376 (379)
                      ++|.  ....+|..+..  +++|++|++++|+....+|.
T Consensus       252 s~N~--l~~~~p~~l~~--l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          252 RNNR--IYGTLPQGLTQ--LKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             CSSC--CEECCCGGGGG--CTTCCEEECCSSEEEEECCC
T ss_pred             cCCc--ccCcCChHHhc--CcCCCEEECcCCcccccCCC
Confidence            9998  33367776654  99999999999999855554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.88  E-value=2.8e-21  Score=175.98  Aligned_cols=256  Identities=16%  Similarity=0.179  Sum_probs=128.9

Q ss_pred             CccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCC
Q 016966           88 HFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNL  163 (379)
Q Consensus        88 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L  163 (379)
                      +++.++++++.+..+|... .+.++.|++++|.+        ..+++..|..+++|++|++++|.    .|..+..+++|
T Consensus        32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKI--------TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL  102 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCC--------CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             CCeEEEecCCCccccCccC-CCCCeEEECCCCcC--------CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence            4455555555444444321 24455555555432        22333334555555555555554    24445555555


Q ss_pred             cEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCc--ccChhhhCCCCCCcEEEec
Q 016966          164 RTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLK--VIPPNILSKLSHLEELYIG  239 (379)
Q Consensus       164 ~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~l~  239 (379)
                      ++|++++|.++. |..+.  ++|++|++++|.+..++. .+..+++|++|++++|....  ..+.. ++.+++|+.|+++
T Consensus       103 ~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~  179 (330)
T 1xku_A          103 ERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA-FQGMKKLSYIRIA  179 (330)
T ss_dssp             CEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG-GGGCTTCCEEECC
T ss_pred             CEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh-ccCCCCcCEEECC
Confidence            555555555544 33322  455555555555554443 34555555555555544321  22222 4555555555555


Q ss_pred             CCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCC-ccc-cccCCcEEEEEeeccccc---CcccccceEEEE
Q 016966          240 RESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLP-RGL-LLEKLERYSIYIRRYFSR---KTGIWCRQFRVE  314 (379)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~  314 (379)
                      +|.+...+           ..+.  ++|+.|++++|.+..++ ..+ .+++|+.|+++.+.....   .+..+++...|+
T Consensus       180 ~n~l~~l~-----------~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  246 (330)
T 1xku_A          180 DTNITTIP-----------QGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH  246 (330)
T ss_dssp             SSCCCSCC-----------SSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred             CCccccCC-----------cccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEE
Confidence            55544321           1111  44555555555544332 222 345555555533322211   112223333444


Q ss_pred             e--CCcccchHHHHHHhcccceeeccccccccccccccccccc-----cCCCCcEEEecCCCCcc
Q 016966          315 L--NNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKV-----GSSHLKRLRLEGSDLAL  372 (379)
Q Consensus       315 l--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~-----~~~~L~~L~l~~c~~l~  372 (379)
                      +  +....+|.++..+ ++|++|++++|.   ++.++...+..     .++.|+.|++.+|+...
T Consensus       247 L~~N~l~~lp~~l~~l-~~L~~L~l~~N~---i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          247 LNNNKLVKVPGGLADH-KYIQVVYLHNNN---ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             CCSSCCSSCCTTTTTC-SSCCEEECCSSC---CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             CCCCcCccCChhhccC-CCcCEEECCCCc---CCccChhhcCCcccccccccccceEeecCcccc
Confidence            4  2223466666664 999999999997   77777654421     25789999999999753

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.87  E-value=1.4e-21  Score=190.27  Aligned_cols=144  Identities=21%  Similarity=0.305  Sum_probs=90.6

Q ss_pred             cCCccEEEEeCCCCCCCC--CCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CC-ccccC
Q 016966           86 IKHFTSIVLHGIKPNLLP--EVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LP-SSLGL  159 (379)
Q Consensus        86 ~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp-~~i~~  159 (379)
                      .+++++|++++|.+..++  .+..+++|++|++++|.+        ..+++..|..+++|++|++++|.   .+ ..++.
T Consensus        25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   96 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI--------NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP   96 (549)
T ss_dssp             CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC--------CEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred             CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCc--------CccChhhccccccCCEEECCCCccCccCHHHhcc
Confidence            467777777777775443  244777777777777543        33444456677777777777776   33 33677


Q ss_pred             CCCCcEEEeecCCCCC---cccccCcCCCcEEEeeCCc-Ccccc-hhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCc
Q 016966          160 LSNLRTLSLCSCGLPD---ISFVGYLKKLEILCLRGSD-IVKLP-VEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLE  234 (379)
Q Consensus       160 l~~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~-l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  234 (379)
                      +++|++|++++|.+..   +..++++++|++|++++|. +..+| ..+..+++|++|++++|......|.. ++.+++|+
T Consensus        97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~  175 (549)
T 2z81_A           97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIH  175 (549)
T ss_dssp             CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEE
T ss_pred             CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCc
Confidence            7777777777777653   4566777777777777775 55565 35667777777777776655544443 34433333


Q ss_pred             EEEe
Q 016966          235 ELYI  238 (379)
Q Consensus       235 ~L~l  238 (379)
                      +|++
T Consensus       176 ~L~l  179 (549)
T 2z81_A          176 HLTL  179 (549)
T ss_dssp             EEEE
T ss_pred             eEec
Confidence            3333

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.87  E-value=1.3e-21  Score=186.13  Aligned_cols=239  Identities=15%  Similarity=0.149  Sum_probs=150.9

Q ss_pred             CCccCCccEEEEeCCCCC-CCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCc
Q 016966           83 GSTIKHFTSIVLHGIKPN-LLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPS  155 (379)
Q Consensus        83 ~~~~~~l~~L~l~~~~~~-~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~  155 (379)
                      ...++++++|++++|.+. .++.  +..+++|++|++++|.+        ..+++..|.++++|++|++++|.    .|.
T Consensus        50 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  121 (455)
T 3v47_A           50 FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF--------LQLETGAFNGLANLEVLTLTQCNLDGAVLS  121 (455)
T ss_dssp             TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT--------CEECTTTTTTCTTCCEEECTTSCCBTHHHH
T ss_pred             hccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc--------CccChhhccCcccCCEEeCCCCCCCccccC
Confidence            345667777777777662 3332  34667777777777543        22333345666677777776666    132


Q ss_pred             c--ccCCCCCcEEEeecCCCCC--ccc-ccCcCCCcEEEeeCCcCcccch-hhc--------------------------
Q 016966          156 S--LGLLSNLRTLSLCSCGLPD--ISF-VGYLKKLEILCLRGSDIVKLPV-EVG--------------------------  203 (379)
Q Consensus       156 ~--i~~l~~L~~L~l~~~~l~~--~~~-~~~l~~L~~L~l~~~~l~~lp~-~~~--------------------------  203 (379)
                      .  +..+++|++|++++|.+..  |.. +.++++|++|++++|.+..++. .+.                          
T Consensus       122 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~  201 (455)
T 3v47_A          122 GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG  201 (455)
T ss_dssp             SSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTT
T ss_pred             cccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcc
Confidence            2  5666667777776666655  322 5666666666666665553321 111                          


Q ss_pred             --------CCCC---------------------------------------------------------------CCEEe
Q 016966          204 --------ELTW---------------------------------------------------------------LKLLD  212 (379)
Q Consensus       204 --------~l~~---------------------------------------------------------------L~~L~  212 (379)
                              .+++                                                               |++|+
T Consensus       202 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  281 (455)
T 3v47_A          202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD  281 (455)
T ss_dssp             HHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEE
T ss_pred             ccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEE
Confidence                    1233                                                               44444


Q ss_pred             ccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCc-cc-cccCCc
Q 016966          213 LRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPR-GL-LLEKLE  290 (379)
Q Consensus       213 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~  290 (379)
                      +++|......|.. ++.+++|+.|++++|.+.+.          .+..++.+++|+.|++++|.+..++. .+ .+++|+
T Consensus       282 l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  350 (455)
T 3v47_A          282 LSKSKIFALLKSV-FSHFTDLEQLTLAQNEINKI----------DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE  350 (455)
T ss_dssp             CCSSCCCEECTTT-TTTCTTCCEEECTTSCCCEE----------CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC
T ss_pred             ecCccccccchhh-cccCCCCCEEECCCCccccc----------ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC
Confidence            4444433333433 67788888888888887764          25678899999999999999986644 43 689999


Q ss_pred             EEEEEeeccccc---CcccccceEEEEe-CC-cccchHHH-HHHhcccceeeccccc
Q 016966          291 RYSIYIRRYFSR---KTGIWCRQFRVEL-NN-KICLKDSL-IVQLQRIEDLELSELQ  341 (379)
Q Consensus       291 ~L~l~~~~~~~~---~~~~~~~~~~L~l-~~-~~~~~~~~-~~~~~~L~~L~l~~~~  341 (379)
                      .|+++.+.....   .+..+++...|++ ++ ...+|... .. +++|+.|++++|+
T Consensus       351 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~l~~N~  406 (455)
T 3v47_A          351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR-LTSLQKIWLHTNP  406 (455)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT-CTTCCEEECCSSC
T ss_pred             EEECCCCcccccChhhccccccccEEECCCCccccCCHhHhcc-CCcccEEEccCCC
Confidence            999976655422   3344566678999 43 33455443 45 5999999999998

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.87  E-value=6.7e-22  Score=178.20  Aligned_cols=192  Identities=18%  Similarity=0.135  Sum_probs=97.8

Q ss_pred             cCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCC
Q 016966           86 IKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLL  160 (379)
Q Consensus        86 ~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l  160 (379)
                      .+++++|++++|.+..++.  +..+++|+.|++++|.+..     ....+.. +..+++|++|++++|.   +|..+..+
T Consensus        27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~-~~~~~~L~~L~Ls~n~i~~l~~~~~~l  100 (306)
T 2z66_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF-----KGCCSQS-DFGTTSLKYLDLSFNGVITMSSNFLGL  100 (306)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCE-----EEEEEHH-HHSCSCCCEEECCSCSEEEEEEEEETC
T ss_pred             CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCc-----ccCcccc-cccccccCEEECCCCccccChhhcCCC
Confidence            3455666666665555554  2355566666665544321     1111222 2345566666666555   44455555


Q ss_pred             CCCcEEEeecCCCCC-c--ccccCcCCCcEEEeeCCcCccc-chhhcCCCCCCEEeccCCCCCc-ccChhhhCCCCCCcE
Q 016966          161 SNLRTLSLCSCGLPD-I--SFVGYLKKLEILCLRGSDIVKL-PVEVGELTWLKLLDLRDCCFLK-VIPPNILSKLSHLEE  235 (379)
Q Consensus       161 ~~L~~L~l~~~~l~~-~--~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~  235 (379)
                      ++|++|++++|.+.. +  ..+..+++|++|++++|.+... |..+..+++|++|++++|.... ..|.. ++.+++|+.
T Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~  179 (306)
T 2z66_A          101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTF  179 (306)
T ss_dssp             TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCE
T ss_pred             CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-HhhCcCCCE
Confidence            666666666555544 2  3455555666666665555532 2345555566666665554433 23333 455556666


Q ss_pred             EEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc--cccCCcEEEE
Q 016966          236 LYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSI  294 (379)
Q Consensus       236 L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l  294 (379)
                      |++++|.+.+..          +..+..+++|+.|++++|.++.++...  .+++|+.|++
T Consensus       180 L~Ls~n~l~~~~----------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  230 (306)
T 2z66_A          180 LDLSQCQLEQLS----------PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY  230 (306)
T ss_dssp             EECTTSCCCEEC----------TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred             EECCCCCcCCcC----------HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence            666655554421          344555555666666555555444321  3444444444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.87  E-value=1.1e-21  Score=191.95  Aligned_cols=283  Identities=18%  Similarity=0.121  Sum_probs=196.4

Q ss_pred             cCcCCCCCCccCCccEEEEeCCCCCCCC--CCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-
Q 016966           76 GCREWSDGSTIKHFTSIVLHGIKPNLLP--EVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-  152 (379)
Q Consensus        76 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-  152 (379)
                      ++...+. ...+++++|++++|.+..++  .+..+++|++|++++|.        ...+++..|.++++|++|++++|. 
T Consensus        18 ~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--------i~~i~~~~~~~l~~L~~L~L~~n~l   88 (570)
T 2z63_A           18 NFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--------IQTIEDGAYQSLSHLSTLILTGNPI   88 (570)
T ss_dssp             CCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC--------CCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             CccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCc--------CCccCcccccCchhCCEEeCcCCcC
Confidence            3444443 34578999999999986665  35589999999999965        445666678899999999999997 


Q ss_pred             ---CCccccCCCCCcEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcc--cchhhcCCCCCCEEeccCCCCCcccChh
Q 016966          153 ---LPSSLGLLSNLRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVK--LPVEVGELTWLKLLDLRDCCFLKVIPPN  225 (379)
Q Consensus       153 ---lp~~i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~  225 (379)
                         .|..++.+++|++|++++|.+.. + ..++++++|++|++++|.+..  +|..++++++|++|++++|......+..
T Consensus        89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~  168 (570)
T 2z63_A           89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD  168 (570)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG
T ss_pred             CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH
Confidence               45788999999999999999888 4 368899999999999998884  7888999999999999997654443333


Q ss_pred             hhCCCCCC----cEEEecCCCCcChhhhhhc-------------------------------------------------
Q 016966          226 ILSKLSHL----EELYIGRESFVDWEEEVEG-------------------------------------------------  252 (379)
Q Consensus       226 ~l~~l~~L----~~L~l~~~~~~~~~~~~~~-------------------------------------------------  252 (379)
                       ++.+++|    +.|++++|.+....+....                                                 
T Consensus       169 -~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~  247 (570)
T 2z63_A          169 -LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD  247 (570)
T ss_dssp             -GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECC
T ss_pred             -ccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcc
Confidence             4555555    6666666655433211100                                                 


Q ss_pred             ----------------------ccccchHhhcCCCCCcEEEeeccCCCCCCccc-cccCCcEEEEEeecccccCc-----
Q 016966          253 ----------------------VKNASLEELKHLPNLTSLEVHVRDVSSLPRGL-LLEKLERYSIYIRRYFSRKT-----  304 (379)
Q Consensus       253 ----------------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~-----  304 (379)
                                            .....+..++.+++|+.|+++++.+..+|..+ .+ +|+.|++..+.......     
T Consensus       248 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~  326 (570)
T 2z63_A          248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKS  326 (570)
T ss_dssp             TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSS
T ss_pred             hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccc
Confidence                                  00112344556677888888877777766655 33 66666664433221111     


Q ss_pred             -----------------ccccceEEEEe-CCccc-c---hHHHHHHhcccceeeccccccccccccccccccccCCCCcE
Q 016966          305 -----------------GIWCRQFRVEL-NNKIC-L---KDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKR  362 (379)
Q Consensus       305 -----------------~~~~~~~~L~l-~~~~~-~---~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~  362 (379)
                                       ..+++...|++ .+... .   +..+..+ ++|++|++++|.   +..++..+.  .+++|++
T Consensus       327 L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-~~L~~L~l~~n~---l~~~~~~~~--~l~~L~~  400 (570)
T 2z63_A          327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-TSLKYLDLSFNG---VITMSSNFL--GLEQLEH  400 (570)
T ss_dssp             CCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTC-SCCCEEECCSCS---EEEEEEEEE--TCTTCCE
T ss_pred             cCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccccccc-CccCEEECCCCc---ccccccccc--ccCCCCE
Confidence                             23344447777 33322 2   4556664 889999999987   666666543  4899999


Q ss_pred             EEecCCCCccCCC
Q 016966          363 LRLEGSDLALNPA  375 (379)
Q Consensus       363 L~l~~c~~l~~~~  375 (379)
                      |++++|.....++
T Consensus       401 L~l~~n~l~~~~~  413 (570)
T 2z63_A          401 LDFQHSNLKQMSE  413 (570)
T ss_dssp             EECTTSEEESCTT
T ss_pred             EEccCCccccccc
Confidence            9999998877655

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.87  E-value=3.2e-21  Score=188.33  Aligned_cols=155  Identities=14%  Similarity=0.166  Sum_probs=101.4

Q ss_pred             cCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCC-CC
Q 016966          203 GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSS-LP  281 (379)
Q Consensus       203 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~  281 (379)
                      ..+++|++|++++|...+..|.. ++.+++|+.|++++|.+.+..        ..+..++.+++|+.|++++|.+.. +|
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~--------~~~~~~~~l~~L~~L~l~~N~l~~~~~  420 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQG-CSTLKRLQTLILQRNGLKNFF--------KVALMTKNMSSLETLDVSLNSLNSHAY  420 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTT-CCSCSSCCEEECCSSCCCBTT--------HHHHTTTTCTTCCEEECTTSCCBSCCS
T ss_pred             cCCCCceEEECCCCccccchhhh-hcccCCCCEEECCCCCcCCcc--------cchhhhcCCCCCCEEECCCCcCCCccC
Confidence            45667777777776665555554 577777777777777766532        134557777888888888888775 76


Q ss_pred             ccc--cccCCcEEEEEeecccccCcccc-cceEEEEe--CCcccchHHHHHHhcccceeecccccccccccccccccccc
Q 016966          282 RGL--LLEKLERYSIYIRRYFSRKTGIW-CRQFRVEL--NNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVG  356 (379)
Q Consensus       282 ~~~--~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~l--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~  356 (379)
                      ...  .+++|+.|+++.+.........+ ++...|++  +....+|.++.. +++|+.|++++|.   ++.+|.... ..
T Consensus       421 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~-l~~L~~L~L~~N~---l~~l~~~~~-~~  495 (562)
T 3a79_B          421 DRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTH-LQALQELNVASNQ---LKSVPDGVF-DR  495 (562)
T ss_dssp             SCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTS-SCCCSEEECCSSC---CCCCCTTST-TT
T ss_pred             hhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcC-CCCCCEEECCCCC---CCCCCHHHH-hc
Confidence            653  56788888876555443333334 34557777  333446666665 4788888888886   667776521 24


Q ss_pred             CCCCcEEEecCCCCc
Q 016966          357 SSHLKRLRLEGSDLA  371 (379)
Q Consensus       357 ~~~L~~L~l~~c~~l  371 (379)
                      +++|+.|++++|+..
T Consensus       496 l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          496 LTSLQYIWLHDNPWD  510 (562)
T ss_dssp             CTTCCCEECCSCCBC
T ss_pred             CCCCCEEEecCCCcC
Confidence            788888888887754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.87  E-value=3.1e-21  Score=190.16  Aligned_cols=262  Identities=14%  Similarity=0.084  Sum_probs=150.5

Q ss_pred             CccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCC
Q 016966           88 HFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLS  161 (379)
Q Consensus        88 ~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~  161 (379)
                      +++.|++++|.+..++.  +..+++|+.|++++|.+        ..+|.. +..+++|++|++++|.    .|..+..++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--------~~lp~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~  325 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL--------SELPSG-LVGLSTLKKLVLSANKFENLCQISASNFP  325 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC--------SCCCSS-CCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCcc--------CCCChh-hcccccCCEEECccCCcCcCchhhhhccC
Confidence            56677777777655554  33667777777777543        234443 3566777777777776    345666777


Q ss_pred             CCcEEEeecCCCCC--c-ccccCcCCCcEEEeeCCcCccc---chhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcE
Q 016966          162 NLRTLSLCSCGLPD--I-SFVGYLKKLEILCLRGSDIVKL---PVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEE  235 (379)
Q Consensus       162 ~L~~L~l~~~~l~~--~-~~~~~l~~L~~L~l~~~~l~~l---p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  235 (379)
                      +|++|++++|.+..  + ..+..+++|++|++++|.+..+   |..+..+++|++|++++|......|.. ++.+++|+.
T Consensus       326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~  404 (606)
T 3t6q_A          326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA-FKECPQLEL  404 (606)
T ss_dssp             TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT-TTTCTTCSE
T ss_pred             cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH-hcCCccCCe
Confidence            77777777776553  2 3466677777777777766644   445667777777777776554444433 566777777


Q ss_pred             EEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCC-ccc-cccCCcEEEEEeecccc------cCcccc
Q 016966          236 LYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLP-RGL-LLEKLERYSIYIRRYFS------RKTGIW  307 (379)
Q Consensus       236 L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~------~~~~~~  307 (379)
                      |++++|.+....         ....++.+++|+.|++++|.+...+ ..+ .+++|+.|+++.+....      .....+
T Consensus       405 L~l~~n~l~~~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l  475 (606)
T 3t6q_A          405 LDLAFTRLKVKD---------AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL  475 (606)
T ss_dssp             EECTTCCEECCT---------TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC
T ss_pred             EECCCCcCCCcc---------cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC
Confidence            777776665432         1223556666666666666665333 223 46666666664443321      112233


Q ss_pred             cceEEEEe-CCccc-c-hHHHHHHhcccceeecccccccccccc-ccccccccCCCCcEEEecCCCCccCCC
Q 016966          308 CRQFRVEL-NNKIC-L-KDSLIVQLQRIEDLELSELQEQDVDYF-RNELVKVGSSHLKRLRLEGSDLALNPA  375 (379)
Q Consensus       308 ~~~~~L~l-~~~~~-~-~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~~~~~~L~~L~l~~c~~l~~~~  375 (379)
                      ++...|++ .+... . |..+..+ ++|+.|++++|.   +... +..+.  .++.| +|++++|.....+|
T Consensus       476 ~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~---l~~~~~~~l~--~l~~L-~L~L~~N~l~~~~~  540 (606)
T 3t6q_A          476 GRLEILVLSFCDLSSIDQHAFTSL-KMMNHVDLSHNR---LTSSSIEALS--HLKGI-YLNLASNHISIILP  540 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSC---CCGGGGGGGT--TCCSC-EEECCSSCCCCCCG
T ss_pred             CCccEEECCCCccCccChhhhccc-cCCCEEECCCCc---cCcCChhHhC--ccccc-EEECcCCcccccCH
Confidence            44446666 22222 2 3444443 666666666665   3332 22222  35566 66666666655554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.87  E-value=1.6e-21  Score=192.19  Aligned_cols=263  Identities=15%  Similarity=0.049  Sum_probs=200.8

Q ss_pred             CCccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--CCccccCC
Q 016966           83 GSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--LPSSLGLL  160 (379)
Q Consensus        83 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--lp~~i~~l  160 (379)
                      ...+++++.|++.++.+..++.+..+++|+.|.+.+|.+        ..+| . + .+++|++|++++|.  .+..+..+
T Consensus       281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l--------~~lp-~-~-~l~~L~~L~l~~n~~~~~~~~~~l  349 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL--------KQFP-T-L-DLPFLKSLTLTMNKGSISFKKVAL  349 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC--------SSCC-C-C-CCSSCCEEEEESCSSCEECCCCCC
T ss_pred             cccCCCCCEEEecCccchhhhhccccccCCEEEcccccC--------cccc-c-C-CCCccceeeccCCcCccchhhccC
Confidence            456788999999999988888777888999999999765        3345 2 3 78899999999886  33356788


Q ss_pred             CCCcEEEeecCCCCC----cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEE
Q 016966          161 SNLRTLSLCSCGLPD----ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEEL  236 (379)
Q Consensus       161 ~~L~~L~l~~~~l~~----~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L  236 (379)
                      ++|++|++++|.+..    +..+..+++|++|++++|.+..+|..+..+++|++|++++|......+...++.+++|+.|
T Consensus       350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  429 (606)
T 3vq2_A          350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL  429 (606)
T ss_dssp             TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred             CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence            899999999988765    4667788899999999998888888888889999999988776666553447888899999


Q ss_pred             EecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCC--CCccc-cccCCcEEEEEeeccccc---Ccccccce
Q 016966          237 YIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSS--LPRGL-LLEKLERYSIYIRRYFSR---KTGIWCRQ  310 (379)
Q Consensus       237 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~~---~~~~~~~~  310 (379)
                      ++++|.+...          .+..++.+++|+.|++++|.+..  +|..+ .+++|+.|+++.+.....   .+..+++.
T Consensus       430 ~l~~n~l~~~----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  499 (606)
T 3vq2_A          430 DISYTNTKID----------FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL  499 (606)
T ss_dssp             ECTTSCCEEC----------CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             ECcCCCCCcc----------chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence            9998887654          35667888888999988888774  55555 678888888865544322   23344556


Q ss_pred             EEEEe-CCccc--chHHHHHHhcccceeeccccccccccccccccccccCC-CCcEEEecCCCCcc
Q 016966          311 FRVEL-NNKIC--LKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSS-HLKRLRLEGSDLAL  372 (379)
Q Consensus       311 ~~L~l-~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~-~L~~L~l~~c~~l~  372 (379)
                      ..|++ .+...  .|..+..+ ++|+.|++++|+   ++.+|..+..  ++ +|++|++++|+..-
T Consensus       500 ~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~l~~N~---l~~~p~~~~~--l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          500 QLLNMSHNNLLFLDSSHYNQL-YSLSTLDCSFNR---IETSKGILQH--FPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             CEEECCSSCCSCEEGGGTTTC-TTCCEEECTTSC---CCCEESCGGG--SCTTCCEEECCSCCCCC
T ss_pred             CEEECCCCcCCCcCHHHccCC-CcCCEEECCCCc---CcccCHhHhh--hcccCcEEEccCCCccc
Confidence            68888 33333  36666664 999999999998   8888887543  76 59999999988763

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.87  E-value=2.1e-21  Score=176.95  Aligned_cols=254  Identities=14%  Similarity=0.142  Sum_probs=135.0

Q ss_pred             CccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCC
Q 016966           88 HFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNL  163 (379)
Q Consensus        88 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L  163 (379)
                      +++.++++++.+..+|... .++++.|++++|.+        ..+++..|.++++|++|++++|.    .|..+..+++|
T Consensus        34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  104 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDI--------SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL  104 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCC--------CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred             cCCEEECCCCCccccCCCC-CCCCeEEECCCCcC--------CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence            4556666666555555422 34566666666432        23333345566666666666665    34556666666


Q ss_pred             cEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCc--ccChhhhCCCCCCcEEEec
Q 016966          164 RTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLK--VIPPNILSKLSHLEELYIG  239 (379)
Q Consensus       164 ~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~l~  239 (379)
                      ++|++++|.+.. |..+.  ++|++|++++|.+..+|. .+..+++|++|++++|....  ..+.. ++.+ +|+.|+++
T Consensus       105 ~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l-~L~~L~l~  180 (332)
T 2ft3_A          105 QKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA-FDGL-KLNYLRIS  180 (332)
T ss_dssp             CEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTS-SCSC-CCSCCBCC
T ss_pred             CEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccc-ccCC-ccCEEECc
Confidence            666666666555 43333  566666666666665554 35566666666666654421  22222 3444 55666665


Q ss_pred             CCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCc-cc-cccCCcEEEEEeeccccc---CcccccceEEEE
Q 016966          240 RESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPR-GL-LLEKLERYSIYIRRYFSR---KTGIWCRQFRVE  314 (379)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~  314 (379)
                      +|.+...+           ..+.  ++|+.|++++|.+..++. .+ .+++|+.|+++.+.....   .+..+++...|+
T Consensus       181 ~n~l~~l~-----------~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  247 (332)
T 2ft3_A          181 EAKLTGIP-----------KDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH  247 (332)
T ss_dssp             SSBCSSCC-----------SSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEE
T ss_pred             CCCCCccC-----------cccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEE
Confidence            55554421           1111  345555555555554332 22 345555555533322211   112223333455


Q ss_pred             e--CCcccchHHHHHHhcccceeeccccccccccccccccccc-----cCCCCcEEEecCCCCc
Q 016966          315 L--NNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKV-----GSSHLKRLRLEGSDLA  371 (379)
Q Consensus       315 l--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~-----~~~~L~~L~l~~c~~l  371 (379)
                      +  +....+|.++..+ ++|+.|++++|.   ++.++...+..     .++.|+.|++.+|+..
T Consensus       248 L~~N~l~~lp~~l~~l-~~L~~L~l~~N~---l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          248 LDNNKLSRVPAGLPDL-KLLQVVYLHTNN---ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CCSSCCCBCCTTGGGC-TTCCEEECCSSC---CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             CCCCcCeecChhhhcC-ccCCEEECCCCC---CCccChhHccccccccccccccceEeecCccc
Confidence            5  2233456666663 888888888887   66666543321     2567888888888866

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.87  E-value=2.2e-21  Score=190.74  Aligned_cols=254  Identities=13%  Similarity=0.120  Sum_probs=170.4

Q ss_pred             CCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcEEEeecCCCCC-c-ccc
Q 016966          106 LECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRTLSLCSCGLPD-I-SFV  179 (379)
Q Consensus       106 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~L~l~~~~l~~-~-~~~  179 (379)
                      ..+.+++.+.+.+|.        ...+|+.+|..+++|++|++++|.    .|..++.+++|++|++++|.+.. + ..+
T Consensus        48 l~l~~l~~l~l~~~~--------l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  119 (597)
T 3oja_B           48 ITLNNQKIVTFKNST--------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF  119 (597)
T ss_dssp             GGGCCCSEEEESSCE--------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             ccCCCceEEEeeCCC--------CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHH
Confidence            367889999999854        567888889999999999999998    55689999999999999999988 4 567


Q ss_pred             cCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccc---
Q 016966          180 GYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKN---  255 (379)
Q Consensus       180 ~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~---  255 (379)
                      +.+++|++|++++|.++.+|.. ++.+++|++|++++|......|.. ++.+++|++|++++|.+...+........   
T Consensus       120 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~  198 (597)
T 3oja_B          120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN  198 (597)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-TTTCTTCCEEECTTSCCSBCCGGGCTTCSEEE
T ss_pred             cCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh-hhcCCcCcEEECcCCCCCCcChhhhhhhhhhh
Confidence            9999999999999999999976 589999999999998766555544 79999999999999988764311100000   


Q ss_pred             ---cchHhhcCCC---------------------CCcEEEeeccCCCCCCccccccCCcEEEEEeeccccc---Cccccc
Q 016966          256 ---ASLEELKHLP---------------------NLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSR---KTGIWC  308 (379)
Q Consensus       256 ---~~~~~l~~l~---------------------~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~  308 (379)
                         .....+...+                     +|+.|++++|.++..+....+++|+.|+++.+.....   .+..++
T Consensus       199 l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  278 (597)
T 3oja_B          199 VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ  278 (597)
T ss_dssp             CCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred             cccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCcc
Confidence               0000111122                     3444444444444432222456666666644433211   222334


Q ss_pred             ceEEEEe-C-CcccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccCC
Q 016966          309 RQFRVEL-N-NKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNP  374 (379)
Q Consensus       309 ~~~~L~l-~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  374 (379)
                      +...|.+ + ....+|..... +++|+.|++++|.   +..+|..+.  .+++|++|++++|+....+
T Consensus       279 ~L~~L~Ls~N~l~~l~~~~~~-l~~L~~L~Ls~N~---l~~i~~~~~--~l~~L~~L~L~~N~l~~~~  340 (597)
T 3oja_B          279 RLERLYISNNRLVALNLYGQP-IPTLKVLDLSHNH---LLHVERNQP--QFDRLENLYLDHNSIVTLK  340 (597)
T ss_dssp             SCCEEECTTSCCCEEECSSSC-CTTCCEEECCSSC---CCCCGGGHH--HHTTCSEEECCSSCCCCCC
T ss_pred             CCCEEECCCCCCCCCCccccc-CCCCcEEECCCCC---CCccCcccc--cCCCCCEEECCCCCCCCcC
Confidence            4446666 2 22224443333 3667777777775   556665543  3677777777777765554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.87  E-value=7.5e-21  Score=173.21  Aligned_cols=257  Identities=15%  Similarity=0.156  Sum_probs=164.5

Q ss_pred             ccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccC
Q 016966           85 TIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGL  159 (379)
Q Consensus        85 ~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~  159 (379)
                      ..+.++.|++++|.+..++.  +..+++|++|++++|.+        ..+++..|..+++|++|++++|.   +|..+. 
T Consensus        50 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--------~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-  120 (330)
T 1xku_A           50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI--------SKISPGAFAPLVKLERLYLSKNQLKELPEKMP-  120 (330)
T ss_dssp             CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC--------CCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC-
T ss_pred             CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcC--------CeeCHHHhcCCCCCCEEECCCCcCCccChhhc-
Confidence            34688889999998876664  45888999999988654        33444456788899999998887   555443 


Q ss_pred             CCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCc---ccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCc
Q 016966          160 LSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIV---KLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLE  234 (379)
Q Consensus       160 l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  234 (379)
                       ++|++|++++|.+..  +..+..+++|++|++++|.+.   ..+..+..+++|++|++++|.. ..+|...   .++|+
T Consensus       121 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l~~~~---~~~L~  195 (330)
T 1xku_A          121 -KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGL---PPSLT  195 (330)
T ss_dssp             -TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCSSC---CTTCS
T ss_pred             -ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc-ccCCccc---cccCC
Confidence             678888888888777  345777888888888887765   3345677777888888877553 3455431   26777


Q ss_pred             EEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCc-cc-cccCCcEEEEEeecccc--cCcccccce
Q 016966          235 ELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPR-GL-LLEKLERYSIYIRRYFS--RKTGIWCRQ  310 (379)
Q Consensus       235 ~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~--~~~~~~~~~  310 (379)
                      +|++++|.+....          +..+..+++|+.|++++|.+..++. .+ .+++|+.|+++.+....  .....+++.
T Consensus       196 ~L~l~~n~l~~~~----------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L  265 (330)
T 1xku_A          196 ELHLDGNKITKVD----------AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI  265 (330)
T ss_dssp             EEECTTSCCCEEC----------TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSC
T ss_pred             EEECCCCcCCccC----------HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCc
Confidence            7777777766532          4566677777777777777765543 23 56777777775444331  112223344


Q ss_pred             EEEEe-CCccc-chHHHH------HHhcccceeeccccccccccc--cccccccccCCCCcEEEecCCC
Q 016966          311 FRVEL-NNKIC-LKDSLI------VQLQRIEDLELSELQEQDVDY--FRNELVKVGSSHLKRLRLEGSD  369 (379)
Q Consensus       311 ~~L~l-~~~~~-~~~~~~------~~~~~L~~L~l~~~~~~~l~~--~~~~~~~~~~~~L~~L~l~~c~  369 (379)
                      ..|++ ++... ++....      ..++.|+.|++.+|+   +..  ++...+ ..++.|+.+++++|.
T Consensus       266 ~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~---~~~~~i~~~~f-~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP---VQYWEIQPSTF-RCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS---SCGGGSCGGGG-TTCCCGGGEEC----
T ss_pred             CEEECCCCcCCccChhhcCCcccccccccccceEeecCc---ccccccCcccc-ccccceeEEEecccC
Confidence            46666 33222 322111      013789999999998   443  222222 247889999998874

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.86  E-value=7.5e-21  Score=169.52  Aligned_cols=203  Identities=22%  Similarity=0.319  Sum_probs=162.7

Q ss_pred             cCcCCCCCCccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-
Q 016966           76 GCREWSDGSTIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-  152 (379)
Q Consensus        76 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-  152 (379)
                      ++...+. ..++++++|+++++.+..++.  +..+++|+.|++++|.+        ..+++..|..+++|++|++++|. 
T Consensus        22 ~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l--------~~~~~~~~~~l~~L~~L~l~~n~~   92 (285)
T 1ozn_A           22 GLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL--------ARIDAAAFTGLALLEQLDLSDNAQ   92 (285)
T ss_dssp             CCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--------CEECTTTTTTCTTCCEEECCSCTT
T ss_pred             CcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcc--------ceeCHhhcCCccCCCEEeCCCCCC
Confidence            3444443 456789999999999876664  45889999999999654        34545557889999999999985 


Q ss_pred             ----CCccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCCCCCcccChh
Q 016966          153 ----LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCCFLKVIPPN  225 (379)
Q Consensus       153 ----lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~  225 (379)
                          .|..+..+++|++|++++|.+..  +..+..+++|++|++++|.++.++.. +..+++|++|++++|.. ..++..
T Consensus        93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~  171 (285)
T 1ozn_A           93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPER  171 (285)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CEECTT
T ss_pred             ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc-cccCHH
Confidence                36678889999999999999887  56788899999999999999988754 78899999999999764 455555


Q ss_pred             hhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc--cccCCcEEEEEeec
Q 016966          226 ILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSIYIRR  298 (379)
Q Consensus       226 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~  298 (379)
                      .+..+++|+.|++++|.+...          .+..+..+++|+.|++++|.++.++...  .+++|+.|+++.+.
T Consensus       172 ~~~~l~~L~~L~l~~n~l~~~----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          172 AFRGLHSLDRLLLHQNRVAHV----------HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEE----------CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             HhcCccccCEEECCCCccccc----------CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence            478899999999999988764          2677888999999999999999877653  68899999885444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.86  E-value=1.1e-20  Score=192.95  Aligned_cols=284  Identities=19%  Similarity=0.168  Sum_probs=196.0

Q ss_pred             cCcCCCCCCccCCccEEEEeCCCCCCCC--CCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-
Q 016966           76 GCREWSDGSTIKHFTSIVLHGIKPNLLP--EVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-  152 (379)
Q Consensus        76 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-  152 (379)
                      .+...+.  .++++++|++++|.+..++  .+..+++|+.|++++|..       ...+++..|.++++|++|++++|. 
T Consensus        15 ~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~-------~~~i~~~~f~~L~~L~~L~Ls~N~l   85 (844)
T 3j0a_A           15 NLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-------PLTIDKEAFRNLPNLRILDLGSSKI   85 (844)
T ss_dssp             CSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC-------CCEECTTTTSSCTTCCEEECTTCCC
T ss_pred             CCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC-------ccccCHHHhcCCCCCCEEECCCCcC
Confidence            4445555  6789999999999996554  355999999999999643       556766778999999999999998 


Q ss_pred             ---CCccccCCCCCcEEEeecCCCCC--ccc--ccCcCCCcEEEeeCCcCcccc--hhhcCCCCCCEEeccCCCCCcccC
Q 016966          153 ---LPSSLGLLSNLRTLSLCSCGLPD--ISF--VGYLKKLEILCLRGSDIVKLP--VEVGELTWLKLLDLRDCCFLKVIP  223 (379)
Q Consensus       153 ---lp~~i~~l~~L~~L~l~~~~l~~--~~~--~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~~~  223 (379)
                         .|..++.+++|++|++++|.+..  +..  ++++++|++|++++|.+..++  ..++++++|++|++++|......+
T Consensus        86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~  165 (844)
T 3j0a_A           86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE  165 (844)
T ss_dssp             CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred             cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence               68889999999999999999886  444  889999999999999988653  578999999999999987655444


Q ss_pred             hhhhCCC--CC------------------------------CcEEEecCCCCcChhhhhhccc-----------------
Q 016966          224 PNILSKL--SH------------------------------LEELYIGRESFVDWEEEVEGVK-----------------  254 (379)
Q Consensus       224 ~~~l~~l--~~------------------------------L~~L~l~~~~~~~~~~~~~~~~-----------------  254 (379)
                      .. ++.+  ++                              |+.|++++|.+....+......                 
T Consensus       166 ~~-l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~  244 (844)
T 3j0a_A          166 HE-LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG  244 (844)
T ss_dssp             GG-GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCB
T ss_pred             HH-cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccc
Confidence            43 3333  34                              4555555554432211000000                 


Q ss_pred             ---------ccchHhhcC--CCCCcEEEeeccCCCCCCc-cc-cccCCcEEEEEeeccccc---CcccccceEEEEe-CC
Q 016966          255 ---------NASLEELKH--LPNLTSLEVHVRDVSSLPR-GL-LLEKLERYSIYIRRYFSR---KTGIWCRQFRVEL-NN  317 (379)
Q Consensus       255 ---------~~~~~~l~~--l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~l-~~  317 (379)
                               ......+..  .++|+.|+++.|.+..++. .+ .+++|+.|+++.+.....   .+..+++...|++ .+
T Consensus       245 ~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N  324 (844)
T 3j0a_A          245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN  324 (844)
T ss_dssp             CSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC
T ss_pred             ccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC
Confidence                     000111112  2578888888888775443 33 578888888876654422   2334455567888 33


Q ss_pred             cc-cc-hHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccCC
Q 016966          318 KI-CL-KDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNP  374 (379)
Q Consensus       318 ~~-~~-~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  374 (379)
                      .. .+ +..+.. +++|+.|++++|.   +..++...+ .++++|++|++++|.....+
T Consensus       325 ~l~~~~~~~~~~-l~~L~~L~L~~N~---i~~~~~~~~-~~l~~L~~L~Ls~N~l~~i~  378 (844)
T 3j0a_A          325 LLGELYSSNFYG-LPKVAYIDLQKNH---IAIIQDQTF-KFLEKLQTLDLRDNALTTIH  378 (844)
T ss_dssp             CCSCCCSCSCSS-CTTCCEEECCSCC---CCCCCSSCS-CSCCCCCEEEEETCCSCCCS
T ss_pred             CCCccCHHHhcC-CCCCCEEECCCCC---CCccChhhh-cCCCCCCEEECCCCCCCccc
Confidence            33 23 444555 4888888888887   666665433 35888999999988876543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.85  E-value=9.9e-21  Score=179.69  Aligned_cols=262  Identities=13%  Similarity=0.102  Sum_probs=137.8

Q ss_pred             ccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-CCccccCCCCC
Q 016966           85 TIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-LPSSLGLLSNL  163 (379)
Q Consensus        85 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-lp~~i~~l~~L  163 (379)
                      .++++++|++++|.+..+|.+..+++|+.|++++|.+..        ++   +..+++|++|++++|. ....++.+++|
T Consensus        40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~--------~~---~~~l~~L~~L~Ls~N~l~~~~~~~l~~L  108 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT--------LD---LSQNTNLTYLACDSNKLTNLDVTPLTKL  108 (457)
T ss_dssp             HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC--------CC---CTTCTTCSEEECCSSCCSCCCCTTCTTC
T ss_pred             HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe--------Ec---cccCCCCCEEECcCCCCceeecCCCCcC
Confidence            345556666666655555544455566666666544322        22   3455556666665555 10125555555


Q ss_pred             cEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCC
Q 016966          164 RTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESF  243 (379)
Q Consensus       164 ~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  243 (379)
                      ++|++++|.++..+ ++.+++|++|++++|.++.++  ++.+++|++|++++|...+.++   ++.+++|+.|++++|.+
T Consensus       109 ~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l  182 (457)
T 3bz5_A          109 TYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKI  182 (457)
T ss_dssp             CEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCC
T ss_pred             CEEECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcc
Confidence            66666555555521 455555555555555555543  4455555555555544343332   34444555555554444


Q ss_pred             cChhhhhhc------------ccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeecccccCcccccceE
Q 016966          244 VDWEEEVEG------------VKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTGIWCRQF  311 (379)
Q Consensus       244 ~~~~~~~~~------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  311 (379)
                      ...+  ...            .....  .++.+++|+.|++++|.++.+| ...+++|+.|+++.+.........+++..
T Consensus       183 ~~l~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~  257 (457)
T 3bz5_A          183 TELD--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELDVSTLSKLT  257 (457)
T ss_dssp             CCCC--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCC
T ss_pred             ceec--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcCHHHCCCCC
Confidence            3321  000            00001  3566777888888877777766 22677788887765555443333444444


Q ss_pred             EEEe-----------CCcc--cchHHHHHHhcccceeecccccccccccccccc------ccccCCCCcEEEecCCCCcc
Q 016966          312 RVEL-----------NNKI--CLKDSLIVQLQRIEDLELSELQEQDVDYFRNEL------VKVGSSHLKRLRLEGSDLAL  372 (379)
Q Consensus       312 ~L~l-----------~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~------~~~~~~~L~~L~l~~c~~l~  372 (379)
                      .|.+           .+..  .+|  ... +++|+.|++++|.  .+..++...      ...++++|++|++++|....
T Consensus       258 ~L~l~~n~L~~L~l~~n~~~~~~~--~~~-l~~L~~L~Ls~n~--~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~  332 (457)
T 3bz5_A          258 TLHCIQTDLLEIDLTHNTQLIYFQ--AEG-CRKIKELDVTHNT--QLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE  332 (457)
T ss_dssp             EEECTTCCCSCCCCTTCTTCCEEE--CTT-CTTCCCCCCTTCT--TCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred             EEeccCCCCCEEECCCCccCCccc--ccc-cccCCEEECCCCc--ccceeccCCCcceEechhhcccCCEEECCCCcccc
Confidence            3332           1111  122  223 4788888888887  555555321      12246777888887777665


Q ss_pred             C
Q 016966          373 N  373 (379)
Q Consensus       373 ~  373 (379)
                      .
T Consensus       333 l  333 (457)
T 3bz5_A          333 L  333 (457)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.85  E-value=1.1e-20  Score=183.96  Aligned_cols=180  Identities=19%  Similarity=0.151  Sum_probs=140.1

Q ss_pred             EEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcEEE
Q 016966           92 IVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRTLS  167 (379)
Q Consensus        92 L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~L~  167 (379)
                      .+.+++.+..+|... .++|++|++++|.+        ..+++..|.++++|++|++++|.    .|..+..+++|++|+
T Consensus        10 c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l--------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   80 (549)
T 2z81_A           10 CDGRSRSFTSIPSGL-TAAMKSLDLSFNKI--------TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD   80 (549)
T ss_dssp             EECTTSCCSSCCSCC-CTTCCEEECCSSCC--------CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             EECCCCccccccccC-CCCccEEECcCCcc--------CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence            456667777788643 37899999999764        34444557899999999999998    567899999999999


Q ss_pred             eecCCCCC-c-ccccCcCCCcEEEeeCCcCcc--cchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCC
Q 016966          168 LCSCGLPD-I-SFVGYLKKLEILCLRGSDIVK--LPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESF  243 (379)
Q Consensus       168 l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  243 (379)
                      +++|.+.. + ..++.+++|++|++++|.++.  .|..++++++|++|++++|...+.+|...++.+++|++|++++|.+
T Consensus        81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l  160 (549)
T 2z81_A           81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL  160 (549)
T ss_dssp             CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence            99999998 5 459999999999999999984  4668999999999999998877888765589999999999999998


Q ss_pred             cChhhhhhcc-------------cccchHh-hcCCCCCcEEEeeccCCCCC
Q 016966          244 VDWEEEVEGV-------------KNASLEE-LKHLPNLTSLEVHVRDVSSL  280 (379)
Q Consensus       244 ~~~~~~~~~~-------------~~~~~~~-l~~l~~L~~L~l~~~~~~~~  280 (379)
                      .+..+...+.             ....+.. ++.+++|+.|++++|.+..+
T Consensus       161 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  211 (549)
T 2z81_A          161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF  211 (549)
T ss_dssp             CEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred             cccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence            7643221110             0111222 24567888888888777653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.85  E-value=3e-20  Score=181.44  Aligned_cols=110  Identities=14%  Similarity=0.109  Sum_probs=85.2

Q ss_pred             CcCCCCCCccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--
Q 016966           77 CREWSDGSTIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--  152 (379)
Q Consensus        77 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--  152 (379)
                      ++..+. ..++++++|++++|.+..++.  +..+++|++|++++|.+        ..+++..|.++++|++|++++|.  
T Consensus        43 L~~ip~-~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l--------~~~~~~~~~~l~~L~~L~Ls~N~l~  113 (562)
T 3a79_B           43 LTHVPK-DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI--------RSLDFHVFLFNQDLEYLDVSHNRLQ  113 (562)
T ss_dssp             CCSCCT-TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC--------CEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             CccCCC-CCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCC--------CcCCHHHhCCCCCCCEEECCCCcCC
Confidence            334443 334789999999999877763  55889999999999654        34555567888999999999988  


Q ss_pred             -CCccccCCCCCcEEEeecCCCCC---cccccCcCCCcEEEeeCCcCcc
Q 016966          153 -LPSSLGLLSNLRTLSLCSCGLPD---ISFVGYLKKLEILCLRGSDIVK  197 (379)
Q Consensus       153 -lp~~i~~l~~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~  197 (379)
                       +|..  .+++|++|++++|.+..   |..++++++|++|++++|.++.
T Consensus       114 ~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          114 NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence             6655  78889999999998876   3678888888888888887653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.84  E-value=4.6e-20  Score=178.43  Aligned_cols=127  Identities=19%  Similarity=0.134  Sum_probs=87.5

Q ss_pred             CCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCC
Q 016966           87 KHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLS  161 (379)
Q Consensus        87 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~  161 (379)
                      +++++|++++|.+..++.  +..+++|++|++++|.+        ..+++..|.++++|++|++++|.   +|..  .++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--------~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~   90 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRI--------QYLDISVFKFNQELEYLDLSHNKLVKISCH--PTV   90 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC--------CEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCcc--------CCcChHHhhcccCCCEEecCCCceeecCcc--ccC
Confidence            677888888877766653  44777788888877553        33444456777888888888777   5544  677


Q ss_pred             CCcEEEeecCCCCC---cccccCcCCCcEEEeeCCcCcccchhhcCCCCC--CEEeccCCCC--CcccChh
Q 016966          162 NLRTLSLCSCGLPD---ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWL--KLLDLRDCCF--LKVIPPN  225 (379)
Q Consensus       162 ~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L--~~L~l~~~~~--~~~~~~~  225 (379)
                      +|++|++++|.+..   |..++++++|++|++++|.++.  ..+..+++|  ++|++++|..  ....|..
T Consensus        91 ~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~  159 (520)
T 2z7x_B           91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG  159 (520)
T ss_dssp             CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT
T ss_pred             CccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc
Confidence            78888888877664   4677777888888888777765  245566666  7888777665  4555544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.84  E-value=3.5e-20  Score=166.88  Aligned_cols=233  Identities=20%  Similarity=0.156  Sum_probs=156.3

Q ss_pred             cEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC------CCccccCCCCC
Q 016966           90 TSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI------LPSSLGLLSNL  163 (379)
Q Consensus        90 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~------lp~~i~~l~~L  163 (379)
                      +.++.+++.+..+|... .++++.|++++|.+        ..++..+|.++++|++|++++|.      .+..+..+++|
T Consensus        10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l--------~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L   80 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKL--------QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL   80 (306)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCCEEECCSSCC--------CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCC
T ss_pred             CEEEcCCCCcccCCCCC-CCCCCEEECCCCcc--------CccCHhHhhccccCCEEECCCCccCcccCccccccccccc
Confidence            35666666666666522 36788888888553        34666667788888888888877      14556677888


Q ss_pred             cEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccch--hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecC
Q 016966          164 RTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPV--EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGR  240 (379)
Q Consensus       164 ~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  240 (379)
                      ++|++++|.+.. +..+..+++|++|++++|.++.++.  .+..+++|++|++++|......+.. ++.+++|++|++++
T Consensus        81 ~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~  159 (306)
T 2z66_A           81 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAG  159 (306)
T ss_dssp             CEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT-TTTCTTCCEEECTT
T ss_pred             CEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh-cccCcCCCEEECCC
Confidence            888888888777 6667788888888888887776664  6778888888888887655444443 67788888888888


Q ss_pred             CCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCC-Cccc-cccCCcEEEEEeeccccc---CcccccceEEEEe
Q 016966          241 ESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSL-PRGL-LLEKLERYSIYIRRYFSR---KTGIWCRQFRVEL  315 (379)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~l  315 (379)
                      |.+.+..         .+..+..+++|+.|++++|.++.+ |..+ .+++|+.|+++.+.....   .+..+++...|++
T Consensus       160 n~l~~~~---------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  230 (306)
T 2z66_A          160 NSFQENF---------LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY  230 (306)
T ss_dssp             CEEGGGE---------ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred             Ccccccc---------chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence            7765421         355677778888888888887755 3334 577888888754443321   1223445557777


Q ss_pred             -CCccc--chHHHHHHhcccceeeccccc
Q 016966          316 -NNKIC--LKDSLIVQLQRIEDLELSELQ  341 (379)
Q Consensus       316 -~~~~~--~~~~~~~~~~~L~~L~l~~~~  341 (379)
                       ++...  .+..+..+.++|++|++++|+
T Consensus       231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          231 SLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             TTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             CCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence             33332  233333321377888888776

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.84  E-value=3.4e-20  Score=169.00  Aligned_cols=239  Identities=17%  Similarity=0.250  Sum_probs=188.7

Q ss_pred             CCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcEEEeecCCCCC--cccccCc
Q 016966          109 PQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYL  182 (379)
Q Consensus       109 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l  182 (379)
                      .+++.+.+.++.        ...+|..+   .++|++|++++|.    .|..+..+++|++|++++|.++.  +..++.+
T Consensus        33 c~l~~l~~~~~~--------l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  101 (332)
T 2ft3_A           33 CHLRVVQCSDLG--------LKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL  101 (332)
T ss_dssp             EETTEEECCSSC--------CSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTC
T ss_pred             ccCCEEECCCCC--------ccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCc
Confidence            368999999855        44566554   3689999999998    45689999999999999999988  6789999


Q ss_pred             CCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhc
Q 016966          183 KKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELK  262 (379)
Q Consensus       183 ~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~  262 (379)
                      ++|++|++++|.++.+|..+.  ++|++|++++|... .++...++.+++|++|++++|.+....        ..+..+.
T Consensus       102 ~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~~  170 (332)
T 2ft3_A          102 RKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSG--------FEPGAFD  170 (332)
T ss_dssp             TTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGG--------SCTTSSC
T ss_pred             CCCCEEECCCCcCCccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCC--------CCccccc
Confidence            999999999999999997665  89999999997754 556555899999999999999886422        1345666


Q ss_pred             CCCCCcEEEeeccCCCCCCccccccCCcEEEEEeeccccc---CcccccceEEEEe-CCccc-ch-HHHHHHhcccceee
Q 016966          263 HLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSR---KTGIWCRQFRVEL-NNKIC-LK-DSLIVQLQRIEDLE  336 (379)
Q Consensus       263 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~l-~~~~~-~~-~~~~~~~~~L~~L~  336 (379)
                      .+ +|+.|++++|.++.+|..+. ++|+.|+++.+.....   .+...++...|++ .+... .+ ..+.. +++|+.|+
T Consensus       171 ~l-~L~~L~l~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~  247 (332)
T 2ft3_A          171 GL-KLNYLRISEAKLTGIPKDLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF-LPTLRELH  247 (332)
T ss_dssp             SC-CCSCCBCCSSBCSSCCSSSC-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG-CTTCCEEE
T ss_pred             CC-ccCEEECcCCCCCccCcccc-CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC-CCCCCEEE
Confidence            66 89999999999999887654 7899999866554422   2334455557888 33333 43 34555 49999999


Q ss_pred             ccccccccccccccccccccCCCCcEEEecCCCCccCCCCC
Q 016966          337 LSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNPAES  377 (379)
Q Consensus       337 l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  377 (379)
                      +++|.   ++.+|..+..  +++|++|++++|+....++..
T Consensus       248 L~~N~---l~~lp~~l~~--l~~L~~L~l~~N~l~~~~~~~  283 (332)
T 2ft3_A          248 LDNNK---LSRVPAGLPD--LKLLQVVYLHTNNITKVGVND  283 (332)
T ss_dssp             CCSSC---CCBCCTTGGG--CTTCCEEECCSSCCCBCCTTS
T ss_pred             CCCCc---CeecChhhhc--CccCCEEECCCCCCCccChhH
Confidence            99997   7888887654  999999999999998877653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.83  E-value=9.8e-20  Score=178.02  Aligned_cols=270  Identities=13%  Similarity=0.128  Sum_probs=180.3

Q ss_pred             CCccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCc-c
Q 016966           83 GSTIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPS-S  156 (379)
Q Consensus        83 ~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~-~  156 (379)
                      ...++++++|++++|.+..++.  +..+++|++|++++|.        ...+++..|.++++|++|++++|.   ++. .
T Consensus        48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~--------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~  119 (570)
T 2z63_A           48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP--------IQSLALGAFSGLSSLQKLVAVETNLASLENFP  119 (570)
T ss_dssp             TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--------CCEECTTTTTTCTTCCEEECTTSCCCCSTTCS
T ss_pred             hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc--------CCccCHhhhcCccccccccccccccccCCCcc
Confidence            4567899999999998866654  4588999999999965        344566667889999999999987   443 5


Q ss_pred             ccCCCCCcEEEeecCCCCC---cccccCcCCCcEEEeeCCcCcccc-hhhcCCCCC----CEEeccCCCCCcccCh----
Q 016966          157 LGLLSNLRTLSLCSCGLPD---ISFVGYLKKLEILCLRGSDIVKLP-VEVGELTWL----KLLDLRDCCFLKVIPP----  224 (379)
Q Consensus       157 i~~l~~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L----~~L~l~~~~~~~~~~~----  224 (379)
                      ++.+++|++|++++|.+..   |..++++++|++|++++|.++.++ ..++.+++|    +++++++|......+.    
T Consensus       120 ~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~  199 (570)
T 2z63_A          120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE  199 (570)
T ss_dssp             CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred             ccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhcc
Confidence            8889999999999998765   678889999999999999887654 345555555    5666665433221111    


Q ss_pred             ----------------------------------------------------------------------------hhhC
Q 016966          225 ----------------------------------------------------------------------------NILS  228 (379)
Q Consensus       225 ----------------------------------------------------------------------------~~l~  228 (379)
                                                                                                  ..++
T Consensus       200 ~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~  279 (570)
T 2z63_A          200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN  279 (570)
T ss_dssp             CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTG
T ss_pred             CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhc
Confidence                                                                                        1133


Q ss_pred             CCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCcc---------------------cccc
Q 016966          229 KLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRG---------------------LLLE  287 (379)
Q Consensus       229 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---------------------~~~~  287 (379)
                      .+++|+.|++.+|.+..           ++..+..+ +|+.|++.+|.+..+|..                     ..++
T Consensus       280 ~l~~L~~L~l~~~~l~~-----------l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~  347 (570)
T 2z63_A          280 CLTNVSSFSLVSVTIER-----------VKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP  347 (570)
T ss_dssp             GGTTCSEEEEESCEECS-----------CCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCT
T ss_pred             CcCcccEEEecCccchh-----------hhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCC
Confidence            45566666666665543           33444444 566666666555544432                     2456


Q ss_pred             CCcEEEEEeecccc-----cCcccccceEEEEe-C-CcccchHHHHHHhcccceeeccccccccccccccccccccCCCC
Q 016966          288 KLERYSIYIRRYFS-----RKTGIWCRQFRVEL-N-NKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHL  360 (379)
Q Consensus       288 ~L~~L~l~~~~~~~-----~~~~~~~~~~~L~l-~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L  360 (379)
                      +|+.|+++.+....     .....+++...|++ . ....++..+.. +++|+.|++.+|.   +...+.......+++|
T Consensus       348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-l~~L~~L~l~~n~---l~~~~~~~~~~~l~~L  423 (570)
T 2z63_A          348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSN---LKQMSEFSVFLSLRNL  423 (570)
T ss_dssp             TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEET-CTTCCEEECTTSE---EESCTTSCTTTTCTTC
T ss_pred             CCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccc-cCCCCEEEccCCc---cccccchhhhhcCCCC
Confidence            66666664433221     11223455558888 3 33345544555 4999999999998   5554331112358999


Q ss_pred             cEEEecCCCCccCCCC
Q 016966          361 KRLRLEGSDLALNPAE  376 (379)
Q Consensus       361 ~~L~l~~c~~l~~~~~  376 (379)
                      ++|++++|.....++.
T Consensus       424 ~~L~l~~n~l~~~~~~  439 (570)
T 2z63_A          424 IYLDISHTHTRVAFNG  439 (570)
T ss_dssp             CEEECTTSCCEECCTT
T ss_pred             CEEeCcCCcccccchh
Confidence            9999999998877664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.83  E-value=4.7e-20  Score=188.24  Aligned_cols=271  Identities=16%  Similarity=0.089  Sum_probs=188.2

Q ss_pred             cEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-----CCccccCCCCCc
Q 016966           90 TSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-----LPSSLGLLSNLR  164 (379)
Q Consensus        90 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-----lp~~i~~l~~L~  164 (379)
                      +..+.+++++..+|.  ..++++.|++++|.+        ..+++..|.++++|++|++++|.     .|..++++++|+
T Consensus         7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i--------~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~   76 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYI--------RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR   76 (844)
T ss_dssp             EEEEESCCCSSCCCS--SCTTCCEEEEESCCC--------CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCC
T ss_pred             eEEEccCCCCCCCCC--CCCCcCEEECCCCcC--------CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCC
Confidence            456777788888988  568999999999764        34444557999999999999995     378899999999


Q ss_pred             EEEeecCCCCC--cccccCcCCCcEEEeeCCcCcc-cchh--hcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEec
Q 016966          165 TLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVK-LPVE--VGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIG  239 (379)
Q Consensus       165 ~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  239 (379)
                      +|++++|.+..  |..++++++|++|++++|.+.. +|..  +.++++|++|++++|......+...++++++|++|+++
T Consensus        77 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls  156 (844)
T 3j0a_A           77 ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS  156 (844)
T ss_dssp             EEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred             EEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence            99999999988  7889999999999999999985 5654  88999999999999887666554448999999999999


Q ss_pred             CCCCcChhhhhhccc----------------ccchHhhcCCC------CCcEEEeeccCCC-CCCccc------------
Q 016966          240 RESFVDWEEEVEGVK----------------NASLEELKHLP------NLTSLEVHVRDVS-SLPRGL------------  284 (379)
Q Consensus       240 ~~~~~~~~~~~~~~~----------------~~~~~~l~~l~------~L~~L~l~~~~~~-~~~~~~------------  284 (379)
                      +|.+....+...+..                ...+..++.++      +|+.|++++|.+. ..+..+            
T Consensus       157 ~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L  236 (844)
T 3j0a_A          157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL  236 (844)
T ss_dssp             SSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEE
T ss_pred             CCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccce
Confidence            998876432111100                00111122222      2777777766544 222111            


Q ss_pred             ---------------------------cccCCcEEEEEeecccc---cCcccccceEEEEe-CCcc-cc-hHHHHHHhcc
Q 016966          285 ---------------------------LLEKLERYSIYIRRYFS---RKTGIWCRQFRVEL-NNKI-CL-KDSLIVQLQR  331 (379)
Q Consensus       285 ---------------------------~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~l-~~~~-~~-~~~~~~~~~~  331 (379)
                                                 ..++|+.|+++.+....   ..+..+++...|++ .+.. .. +..+.. +++
T Consensus       237 ~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~  315 (844)
T 3j0a_A          237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG-LDN  315 (844)
T ss_dssp             ECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTT-CSS
T ss_pred             ecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcC-CCC
Confidence                                       02456666664333221   12233445557777 3333 33 344555 488


Q ss_pred             cceeeccccccccccccc-cccccccCCCCcEEEecCCCCccCCCC
Q 016966          332 IEDLELSELQEQDVDYFR-NELVKVGSSHLKRLRLEGSDLALNPAE  376 (379)
Q Consensus       332 L~~L~l~~~~~~~l~~~~-~~~~~~~~~~L~~L~l~~c~~l~~~~~  376 (379)
                      |++|++++|.   +..+. ..+.  ++++|++|++++|....++++
T Consensus       316 L~~L~Ls~N~---l~~~~~~~~~--~l~~L~~L~L~~N~i~~~~~~  356 (844)
T 3j0a_A          316 LQVLNLSYNL---LGELYSSNFY--GLPKVAYIDLQKNHIAIIQDQ  356 (844)
T ss_dssp             CCEEEEESCC---CSCCCSCSCS--SCTTCCEEECCSCCCCCCCSS
T ss_pred             CCEEECCCCC---CCccCHHHhc--CCCCCCEEECCCCCCCccChh
Confidence            8888888887   55553 3333  488899999988877666654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.82  E-value=2.3e-20  Score=169.02  Aligned_cols=184  Identities=15%  Similarity=0.138  Sum_probs=93.0

Q ss_pred             cCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCCCCccccCCCCC
Q 016966           86 IKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMILPSSLGLLSNL  163 (379)
Q Consensus        86 ~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~lp~~i~~l~~L  163 (379)
                      .+++++|++++|.+..++.  +..+++|+.|++++|.+.        ..++  |..+++|++|++++|.+. .+...++|
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--------~~~~--~~~l~~L~~L~Ls~n~l~-~l~~~~~L  101 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY--------ETLD--LESLSTLRTLDLNNNYVQ-ELLVGPSI  101 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCE--------EEEE--ETTCTTCCEEECCSSEEE-EEEECTTC
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCC--------cchh--hhhcCCCCEEECcCCccc-cccCCCCc
Confidence            3456666666665544442  335556666666654432        1222  455566666666665411 11223556


Q ss_pred             cEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCC
Q 016966          164 RTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE  241 (379)
Q Consensus       164 ~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  241 (379)
                      ++|++++|.+.. +..  .+++|++|++++|.++.++. .+..+++|++|++++|......+......+++|++|++++|
T Consensus       102 ~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  179 (317)
T 3o53_A          102 ETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (317)
T ss_dssp             CEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             CEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence            666666665555 221  24556666666665555433 44555566666666655444333332234556666666655


Q ss_pred             CCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc-cccCCcEEEE
Q 016966          242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL-LLEKLERYSI  294 (379)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l  294 (379)
                      .+...            .....+++|+.|++++|.++.+|..+ .+++|+.|++
T Consensus       180 ~l~~~------------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L  221 (317)
T 3o53_A          180 FIYDV------------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL  221 (317)
T ss_dssp             CCCEE------------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEEC
T ss_pred             cCccc------------ccccccccCCEEECCCCcCCcchhhhcccCcccEEEC
Confidence            55432            12223555666666666555554443 4455555555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.82  E-value=1.1e-19  Score=181.37  Aligned_cols=261  Identities=17%  Similarity=0.112  Sum_probs=176.5

Q ss_pred             ccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCc-ccc
Q 016966           85 TIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPS-SLG  158 (379)
Q Consensus        85 ~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~-~i~  158 (379)
                      ..+++++|++++|.+..++.  +..+++|++|++++|.+        ..+++..|.++++|++|++++|.   +|. .++
T Consensus        23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--------~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~   94 (680)
T 1ziw_A           23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI--------SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA   94 (680)
T ss_dssp             SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC--------CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc--------CccCHHHHhcccCcCEEECCCCccCccChhhhc
Confidence            34688888888888876664  44788888888888654        33445566788888888888887   554 578


Q ss_pred             CCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccc-hhhcCCCCCCEEeccCCCCCcccChhhhC--CCCCC
Q 016966          159 LLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLP-VEVGELTWLKLLDLRDCCFLKVIPPNILS--KLSHL  233 (379)
Q Consensus       159 ~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~--~l~~L  233 (379)
                      .+++|++|++++|.+..  +..++++++|++|++++|.++..+ ..++++++|++|++++|......+.. ++  .+++|
T Consensus        95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~L  173 (680)
T 1ziw_A           95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE-LDIFANSSL  173 (680)
T ss_dssp             TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH-HGGGTTCEE
T ss_pred             cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH-hhccccccc
Confidence            88888888888888877  356888888888888888777543 45778888888888886654433332 32  45788


Q ss_pred             cEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCC-C----CccccccCCcEEEEEeeccccc---Ccc
Q 016966          234 EELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSS-L----PRGLLLEKLERYSIYIRRYFSR---KTG  305 (379)
Q Consensus       234 ~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~----~~~~~~~~L~~L~l~~~~~~~~---~~~  305 (379)
                      ++|++++|.+.+..          +..+..+++|+.+.+..+.+.. .    +..+..++|+.|+++.+.....   .+.
T Consensus       174 ~~L~L~~n~l~~~~----------~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~  243 (680)
T 1ziw_A          174 KKLELSSNQIKEFS----------PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL  243 (680)
T ss_dssp             SEEECTTCCCCCBC----------TTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred             cEEECCCCcccccC----------hhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence            88888888776643          5566777788888887665541 1    1111347788888854433221   122


Q ss_pred             ccc--ceEEEEe-CCcc-cc-hHHHHHHhcccceeecccccccccccccc-ccccccCCCCcEEEecCCCC
Q 016966          306 IWC--RQFRVEL-NNKI-CL-KDSLIVQLQRIEDLELSELQEQDVDYFRN-ELVKVGSSHLKRLRLEGSDL  370 (379)
Q Consensus       306 ~~~--~~~~L~l-~~~~-~~-~~~~~~~~~~L~~L~l~~~~~~~l~~~~~-~~~~~~~~~L~~L~l~~c~~  370 (379)
                      ...  +...|++ .+.. .. +..+..+ ++|++|++++|.   +..++. .+.  ++++|++|++++|..
T Consensus       244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~---l~~~~~~~~~--~l~~L~~L~L~~~~~  308 (680)
T 1ziw_A          244 GLKWTNLTMLDLSYNNLNVVGNDSFAWL-PQLEYFFLEYNN---IQHLFSHSLH--GLFNVRYLNLKRSFT  308 (680)
T ss_dssp             GGGGSCCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSCC---BSEECTTTTT--TCTTCCEEECTTCBC
T ss_pred             ccCcCCCCEEECCCCCcCccCcccccCc-ccccEeeCCCCc---cCccChhhhc--CCCCccEEeccchhh
Confidence            222  2558888 3333 23 3455564 899999999987   444433 332  488999999987653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.82  E-value=3.5e-19  Score=158.70  Aligned_cols=191  Identities=17%  Similarity=0.227  Sum_probs=157.7

Q ss_pred             cEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcE
Q 016966           90 TSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRT  165 (379)
Q Consensus        90 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~  165 (379)
                      +.++..++.+..+|.. ..++++.|++++|.        ...+++..|..+++|++|++++|.    .|..+..+++|++
T Consensus        14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~--------i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   84 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGNR--------ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ   84 (285)
T ss_dssp             CEEECCSSCCSSCCTT-CCTTCSEEECTTSC--------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             eEEEcCcCCcccCCcC-CCCCceEEEeeCCc--------CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCE
Confidence            6777788878777752 35789999999965        445666668899999999999998    5778999999999


Q ss_pred             EEeecCC-CCC--cccccCcCCCcEEEeeCCcCcccc-hhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCC
Q 016966          166 LSLCSCG-LPD--ISFVGYLKKLEILCLRGSDIVKLP-VEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE  241 (379)
Q Consensus       166 L~l~~~~-l~~--~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  241 (379)
                      |++++|. +..  +..+..+++|++|++++|.++.++ ..+..+++|++|++++|... .++...++.+++|++|++++|
T Consensus        85 L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n  163 (285)
T 1ozn_A           85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGN  163 (285)
T ss_dssp             EECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred             EeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCC
Confidence            9999997 777  578899999999999999999774 56889999999999997754 555544789999999999999


Q ss_pred             CCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCC-Cccc-cccCCcEEEEEeeccc
Q 016966          242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSL-PRGL-LLEKLERYSIYIRRYF  300 (379)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~  300 (379)
                      .+....          ...+..+++|+.|++++|.+..+ |..+ .+++|+.|+++.+...
T Consensus       164 ~l~~~~----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  214 (285)
T 1ozn_A          164 RISSVP----------ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS  214 (285)
T ss_dssp             CCCEEC----------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             cccccC----------HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence            988643          34588899999999999999855 5555 6899999999655443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.82  E-value=1.9e-19  Score=179.83  Aligned_cols=195  Identities=21%  Similarity=0.256  Sum_probs=92.6

Q ss_pred             CccCCccEEEEeCCCCC------CCC-----CCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC
Q 016966           84 STIKHFTSIVLHGIKPN------LLP-----EVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI  152 (379)
Q Consensus        84 ~~~~~l~~L~l~~~~~~------~~~-----~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  152 (379)
                      ..++++++|++.++...      .+|     .+..+++|+.|++++|.+        ..+++..|..+++|++|++++|.
T Consensus       293 ~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l--------~~~~~~~~~~l~~L~~L~Ls~n~  364 (680)
T 1ziw_A          293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI--------PGIKSNMFTGLINLKYLSLSNSF  364 (680)
T ss_dssp             TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB--------CCCCTTTTTTCTTCCEEECTTCB
T ss_pred             cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc--------CCCChhHhccccCCcEEECCCCc
Confidence            45566666666654321      222     233566666666666543        22344445566666666666553


Q ss_pred             -----CC-cccc--CCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCc-ccc-hhhcCCCCCCEEeccCCCCCc
Q 016966          153 -----LP-SSLG--LLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIV-KLP-VEVGELTWLKLLDLRDCCFLK  220 (379)
Q Consensus       153 -----lp-~~i~--~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp-~~~~~l~~L~~L~l~~~~~~~  220 (379)
                           ++ ..+.  ....|++|++++|.+..  +..+..+++|++|++++|.+. .+| ..+..+++|++|++++|....
T Consensus       365 ~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  444 (680)
T 1ziw_A          365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ  444 (680)
T ss_dssp             SCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE
T ss_pred             hhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcce
Confidence                 11 1111  11345555555555554  344555555555555555554 233 345555555555555544322


Q ss_pred             ccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc--cccCCcEEEEE
Q 016966          221 VIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSIY  295 (379)
Q Consensus       221 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~  295 (379)
                      ..+.. +..+++|+.|++.+|.+....        ..+..++.+++|+.|++++|.++.++...  .+++|+.|+++
T Consensus       445 ~~~~~-~~~~~~L~~L~l~~n~l~~~~--------~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls  512 (680)
T 1ziw_A          445 LTRNS-FALVPSLQRLMLRRVALKNVD--------SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ  512 (680)
T ss_dssp             CCTTT-TTTCTTCCEEECTTSCCBCTT--------CSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             eChhh-hhcCcccccchhccccccccc--------cCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCC
Confidence            22222 444555555555544443211        12334444445555555555444443322  34445554443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.82  E-value=3e-20  Score=177.93  Aligned_cols=232  Identities=14%  Similarity=0.159  Sum_probs=135.2

Q ss_pred             ccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCCCCccccCCCC
Q 016966           85 TIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMILPSSLGLLSN  162 (379)
Q Consensus        85 ~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~lp~~i~~l~~  162 (379)
                      .++++++|++++|.+..+++  +..+++|+.|++++|.+.+        .++  |..+++|++|++++|.+. .+...++
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~--l~~l~~L~~L~Ls~N~l~-~l~~~~~  100 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--------TLD--LESLSTLRTLDLNNNYVQ-ELLVGPS  100 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE--------EEE--CTTCTTCCEEECCSSEEE-EEEECTT
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC--------Ccc--cccCCCCCEEEecCCcCC-CCCCCCC
Confidence            34467777777777755542  3467777777777755421        222  566777777777777511 1222367


Q ss_pred             CcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCccc-chhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecC
Q 016966          163 LRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKL-PVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGR  240 (379)
Q Consensus       163 L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  240 (379)
                      |++|++++|.+.. +..  .+++|++|++++|.++.+ |..++.+++|++|++++|......|....+.+++|+.|++++
T Consensus       101 L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~  178 (487)
T 3oja_A          101 IETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (487)
T ss_dssp             CCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             cCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence            7777777777766 332  346677777777777655 335666777777777776665555555333667777777777


Q ss_pred             CCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc-cccCCcEEEEEeecccccCcccccceEEEEeCCcc
Q 016966          241 ESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL-LLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKI  319 (379)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~  319 (379)
                      |.+.+.            +....+++|+.|++++|.++.+|..+ .+++|+.|+++.+...                   
T Consensus       179 N~l~~~------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-------------------  227 (487)
T 3oja_A          179 NFIYDV------------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-------------------  227 (487)
T ss_dssp             SCCCEE------------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-------------------
T ss_pred             Cccccc------------cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-------------------
Confidence            766642            22334667777777777777665554 4566666666333222                   


Q ss_pred             cchHHHHHHhcccceeecccccccccc--ccccccccccCCCCcEEEec
Q 016966          320 CLKDSLIVQLQRIEDLELSELQEQDVD--YFRNELVKVGSSHLKRLRLE  366 (379)
Q Consensus       320 ~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~~~~~~~L~~L~l~  366 (379)
                      .+|..+.. +++|+.|++++|+   +.  .++..+.  .++.|+.|++.
T Consensus       228 ~lp~~l~~-l~~L~~L~l~~N~---l~c~~~~~~~~--~l~~L~~l~~~  270 (487)
T 3oja_A          228 LIEKALRF-SQNLEHFDLRGNG---FHCGTLRDFFS--KNQRVQTVAKQ  270 (487)
T ss_dssp             EECTTCCC-CTTCCEEECTTCC---BCHHHHHHHHT--TCHHHHHHHHH
T ss_pred             ccchhhcc-CCCCCEEEcCCCC---CcCcchHHHHH--hCCCCcEEecc
Confidence            12322322 3667777777766   33  3333222  35566655553

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.82  E-value=4.5e-19  Score=168.31  Aligned_cols=249  Identities=15%  Similarity=0.109  Sum_probs=147.8

Q ss_pred             CCccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccC
Q 016966           83 GSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGL  159 (379)
Q Consensus        83 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~  159 (379)
                      ...++++++|++++|.+..++ +..+++|+.|++++|.+..        ++   +..+++|++|++++|.   +|  ++.
T Consensus        60 l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~--------~~---~~~l~~L~~L~L~~N~l~~l~--~~~  125 (457)
T 3bz5_A           60 IEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTN--------LD---VTPLTKLTYLNCDTNKLTKLD--VSQ  125 (457)
T ss_dssp             GGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSC--------CC---CTTCTTCCEEECCSSCCSCCC--CTT
T ss_pred             hcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCce--------ee---cCCCCcCCEEECCCCcCCeec--CCC
Confidence            344555666666666555543 4455556666665544322        11   3445555555555554   22  444


Q ss_pred             CCCCcEEEeecCCCCCc---------------------ccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCC
Q 016966          160 LSNLRTLSLCSCGLPDI---------------------SFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCF  218 (379)
Q Consensus       160 l~~L~~L~l~~~~l~~~---------------------~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~  218 (379)
                      +++|++|++++|.++..                     -.++.+++|++|++++|.++.+|  +..+++|++|++++|..
T Consensus       126 l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l  203 (457)
T 3bz5_A          126 NPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNI  203 (457)
T ss_dssp             CTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCC
T ss_pred             CCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcC
Confidence            44444444444444331                     13556667777777777777766  66777777777777654


Q ss_pred             CcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeec
Q 016966          219 LKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRR  298 (379)
Q Consensus       219 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  298 (379)
                      .. ++   ++.+++|+.|++++|.+.+           ++  ++.+++|+.|++++|.++.+|.. .+++|+.|++..+.
T Consensus       204 ~~-~~---l~~l~~L~~L~Ls~N~l~~-----------ip--~~~l~~L~~L~l~~N~l~~~~~~-~l~~L~~L~l~~n~  265 (457)
T 3bz5_A          204 TK-LD---LNQNIQLTFLDCSSNKLTE-----------ID--VTPLTQLTYFDCSVNPLTELDVS-TLSKLTTLHCIQTD  265 (457)
T ss_dssp             SC-CC---CTTCTTCSEEECCSSCCSC-----------CC--CTTCTTCSEEECCSSCCSCCCCT-TCTTCCEEECTTCC
T ss_pred             Ce-ec---cccCCCCCEEECcCCcccc-----------cC--ccccCCCCEEEeeCCcCCCcCHH-HCCCCCEEeccCCC
Confidence            43 32   5777888888888887765           23  77889999999999999977633 46667666543222


Q ss_pred             cccc------Cc-----ccccceEEEEeCCcc---cchH--------HHHHHhcccceeecccccccccccccccccccc
Q 016966          299 YFSR------KT-----GIWCRQFRVELNNKI---CLKD--------SLIVQLQRIEDLELSELQEQDVDYFRNELVKVG  356 (379)
Q Consensus       299 ~~~~------~~-----~~~~~~~~L~l~~~~---~~~~--------~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~  356 (379)
                      ....      ..     ..+++...|++.++.   .+|.        .+.. .++|+.|++++|.   ++.++  +  ..
T Consensus       266 L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~-~~~L~~L~L~~N~---l~~l~--l--~~  337 (457)
T 3bz5_A          266 LLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ-NPKLVYLYLNNTE---LTELD--V--SH  337 (457)
T ss_dssp             CSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT-CTTCCEEECTTCC---CSCCC--C--TT
T ss_pred             CCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhh-cccCCEEECCCCc---ccccc--c--cc
Confidence            1100      01     122334456662211   1111        0233 3788888888887   66653  3  35


Q ss_pred             CCCCcEEEecCCCCccC
Q 016966          357 SSHLKRLRLEGSDLALN  373 (379)
Q Consensus       357 ~~~L~~L~l~~c~~l~~  373 (379)
                      +++|+.|++++|.....
T Consensus       338 l~~L~~L~l~~N~l~~l  354 (457)
T 3bz5_A          338 NTKLKSLSCVNAHIQDF  354 (457)
T ss_dssp             CTTCSEEECCSSCCCBC
T ss_pred             CCcCcEEECCCCCCCCc
Confidence            99999999999987754

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.82  E-value=8.1e-20  Score=167.94  Aligned_cols=245  Identities=16%  Similarity=0.198  Sum_probs=188.4

Q ss_pred             cCcCCCCCCccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-
Q 016966           76 GCREWSDGSTIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-  152 (379)
Q Consensus        76 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-  152 (379)
                      .++..+. ...+++++|++++|.+..++.  +..+++|+.|++++|.+        ..+++..|.++++|++|++++|. 
T Consensus        42 ~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--------~~~~~~~~~~l~~L~~L~Ls~n~l  112 (353)
T 2z80_A           42 SLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI--------NTIEEDSFSSLGSLEHLDLSYNYL  112 (353)
T ss_dssp             TCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC--------CEECTTTTTTCTTCCEEECCSSCC
T ss_pred             Ccccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc--------CccCHhhcCCCCCCCEEECCCCcC
Confidence            3444443 345689999999999977765  55899999999999754        44555667899999999999998 


Q ss_pred             --CCcc-ccCCCCCcEEEeecCCCCC-cc--cccCcCCCcEEEeeCC-cCcccc-hhhcCCCCCCEEeccCCCCCcccCh
Q 016966          153 --LPSS-LGLLSNLRTLSLCSCGLPD-IS--FVGYLKKLEILCLRGS-DIVKLP-VEVGELTWLKLLDLRDCCFLKVIPP  224 (379)
Q Consensus       153 --lp~~-i~~l~~L~~L~l~~~~l~~-~~--~~~~l~~L~~L~l~~~-~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~  224 (379)
                        +|.. ++.+++|++|++++|.+.. +.  .+..+++|++|++++| .+..++ ..+..+++|++|++++|......|.
T Consensus       113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  192 (353)
T 2z80_A          113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK  192 (353)
T ss_dssp             SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred             CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence              5654 8899999999999999988 54  6889999999999999 577765 5788999999999999887666666


Q ss_pred             hhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc-----cccCCcEEEEEeecc
Q 016966          225 NILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL-----LLEKLERYSIYIRRY  299 (379)
Q Consensus       225 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~l~~~~~  299 (379)
                      . ++.+++|++|++++|.+...+          ...+..+++|+.|++++|.++.++...     ..+.++.+++.....
T Consensus       193 ~-l~~l~~L~~L~l~~n~l~~~~----------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l  261 (353)
T 2z80_A          193 S-LKSIQNVSHLILHMKQHILLL----------EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI  261 (353)
T ss_dssp             T-TTTCSEEEEEEEECSCSTTHH----------HHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred             H-HhccccCCeecCCCCccccch----------hhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence            5 799999999999999987643          234456889999999999988654321     356677777754433


Q ss_pred             ccc-------CcccccceEEEEe--CCcccchHHH-HHHhcccceeeccccc
Q 016966          300 FSR-------KTGIWCRQFRVEL--NNKICLKDSL-IVQLQRIEDLELSELQ  341 (379)
Q Consensus       300 ~~~-------~~~~~~~~~~L~l--~~~~~~~~~~-~~~~~~L~~L~l~~~~  341 (379)
                      ...       .+..+++...|++  +....+|..+ .. +++|++|++++|+
T Consensus       262 ~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~-l~~L~~L~L~~N~  312 (353)
T 2z80_A          262 TDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDR-LTSLQKIWLHTNP  312 (353)
T ss_dssp             CHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSC
T ss_pred             cCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhc-CCCCCEEEeeCCC
Confidence            211       1223445568888  4444577665 45 5999999999998

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.81  E-value=4.7e-21  Score=173.14  Aligned_cols=243  Identities=14%  Similarity=0.108  Sum_probs=179.2

Q ss_pred             cCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhh------hCCCceeEEEecCCC----CCc
Q 016966           86 IKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFF------KSMIEVRVVNLTDMI----LPS  155 (379)
Q Consensus        86 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~------~~l~~L~~L~l~~~~----lp~  155 (379)
                      .++++.+.+.+|.+ .+|... ...|+.|++++|.+..      ..++..++      ..+++|++|++++|.    .|.
T Consensus        42 ~~~L~~l~l~~n~l-~~p~~~-~~~L~~L~L~~n~l~~------~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE-ADLGQF-TDIIKSLSLKRLTVRA------ARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEECTTHHHHCCTT-CCCHHH-HHHHHHCCCCEEEEEE------EECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             CCCceeEeeccccc-ccHHHH-HHHHhhcccccccccC------CCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            35677777778877 555422 1127788888765421      13444332      268999999999998    666


Q ss_pred             cc--cCCCCCcEEEeecCCCCC-cccccCc-----CCCcEEEeeCCcCcccc-hhhcCCCCCCEEeccCCCCCccc--Ch
Q 016966          156 SL--GLLSNLRTLSLCSCGLPD-ISFVGYL-----KKLEILCLRGSDIVKLP-VEVGELTWLKLLDLRDCCFLKVI--PP  224 (379)
Q Consensus       156 ~i--~~l~~L~~L~l~~~~l~~-~~~~~~l-----~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~--~~  224 (379)
                      .+  ..+++|++|++++|.+.. |..++.+     ++|++|++++|.+..++ ..++.+++|++|++++|...+..  +.
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred             HHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence            65  889999999999999888 7777776     89999999999999777 68889999999999998866542  32


Q ss_pred             h-hhCCCCCCcEEEecCCCCcChhhhhhcccccch-HhhcCCCCCcEEEeeccCCCCCC-cc-c-cccCCcEEEEEeecc
Q 016966          225 N-ILSKLSHLEELYIGRESFVDWEEEVEGVKNASL-EELKHLPNLTSLEVHVRDVSSLP-RG-L-LLEKLERYSIYIRRY  299 (379)
Q Consensus       225 ~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~-~~-~-~~~~L~~L~l~~~~~  299 (379)
                      . .++.+++|++|++++|.+...+        ..+ ..+..+++|+.|++++|.+...+ .. . .+++|+.|+++.+..
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l  265 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMETPS--------GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL  265 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCCHH--------HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC
T ss_pred             HHHhccCCCCCEEECCCCcCcchH--------HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc
Confidence            3 1278999999999999987532        022 33467889999999999998644 22 2 578899998844433


Q ss_pred             cccCcccccceEEEEeCCcccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCcc
Q 016966          300 FSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLAL  372 (379)
Q Consensus       300 ~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~  372 (379)
                      .                   .+|..+   +++|++|++++|.   ++.+|. +.  .+++|++|++++|+...
T Consensus       266 ~-------------------~ip~~~---~~~L~~L~Ls~N~---l~~~p~-~~--~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          266 K-------------------QVPKGL---PAKLSVLDLSYNR---LDRNPS-PD--ELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             S-------------------SCCSSC---CSEEEEEECCSSC---CCSCCC-TT--TSCEEEEEECTTCTTTC
T ss_pred             C-------------------hhhhhc---cCCceEEECCCCC---CCCChh-Hh--hCCCCCEEeccCCCCCC
Confidence            2                   233323   3789999999998   777765 33  59999999999998764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.81  E-value=2.3e-19  Score=169.82  Aligned_cols=202  Identities=20%  Similarity=0.238  Sum_probs=160.1

Q ss_pred             cCcCCCCCCccCCccEEEEeCCCCCCCC--CCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-
Q 016966           76 GCREWSDGSTIKHFTSIVLHGIKPNLLP--EVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-  152 (379)
Q Consensus        76 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-  152 (379)
                      .+...+. ...++++.|++++|.+..++  .+..+++|+.|++++|.        ...++...|.++++|++|++++|. 
T Consensus        54 ~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~--------i~~i~~~~~~~l~~L~~L~L~~n~l  124 (440)
T 3zyj_A           54 NLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH--------IRTIEIGAFNGLANLNTLELFDNRL  124 (440)
T ss_dssp             CCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC--------CCEECGGGGTTCSSCCEEECCSSCC
T ss_pred             CcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc--------CCccChhhccCCccCCEEECCCCcC
Confidence            3444443 44578999999999996665  35589999999999965        445666778899999999999998 


Q ss_pred             --CC-ccccCCCCCcEEEeecCCCCC-c-ccccCcCCCcEEEeeCC-cCcccch-hhcCCCCCCEEeccCCCCCcccChh
Q 016966          153 --LP-SSLGLLSNLRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGS-DIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPN  225 (379)
Q Consensus       153 --lp-~~i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~-~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~  225 (379)
                        +| ..+..+++|++|++++|.+.. + ..+..+++|++|++++| .+..++. .+..+++|++|++++|.. ..+|. 
T Consensus       125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~-  202 (440)
T 3zyj_A          125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL-REIPN-  202 (440)
T ss_dssp             SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC-SSCCC-
T ss_pred             CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC-ccccc-
Confidence              44 468899999999999999888 3 57888999999999985 6667765 578899999999999764 56664 


Q ss_pred             hhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCcc-c-cccCCcEEEEEeecc
Q 016966          226 ILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRG-L-LLEKLERYSIYIRRY  299 (379)
Q Consensus       226 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~  299 (379)
                       +..+++|+.|++++|.+....          +..+..+++|+.|++++|.+..++.. + .+++|+.|+++.+..
T Consensus       203 -~~~l~~L~~L~Ls~N~l~~~~----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  267 (440)
T 3zyj_A          203 -LTPLIKLDELDLSGNHLSAIR----------PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL  267 (440)
T ss_dssp             -CTTCSSCCEEECTTSCCCEEC----------TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred             -cCCCcccCEEECCCCccCccC----------hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence             688999999999999887653          56788889999999999988866543 3 678899998855443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.81  E-value=8.1e-19  Score=171.74  Aligned_cols=234  Identities=19%  Similarity=0.161  Sum_probs=179.7

Q ss_pred             cCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCC
Q 016966           86 IKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSN  162 (379)
Q Consensus        86 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~  162 (379)
                      .++++.|++++|.+..+|.  .+++|++|++++|.+.        .+|.    .+++|++|++++|.   +|.   .+.+
T Consensus        60 ~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~--------~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~  122 (622)
T 3g06_A           60 PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLT--------SLPV----LPPGLLELSIFSNPLTHLPA---LPSG  122 (622)
T ss_dssp             CTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCS--------CCCC----CCTTCCEEEECSCCCCCCCC---CCTT
T ss_pred             CCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCC--------cCCC----CCCCCCEEECcCCcCCCCCC---CCCC
Confidence            4789999999999888887  6789999999997653        3444    57899999999998   554   6788


Q ss_pred             CcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCC
Q 016966          163 LRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE  241 (379)
Q Consensus       163 L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  241 (379)
                      |++|++++|.++. |..   +++|++|++++|.++.+|.   .+++|+.|++++|.. ..+|    ..+++|+.|++++|
T Consensus       123 L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l-~~l~----~~~~~L~~L~Ls~N  191 (622)
T 3g06_A          123 LCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQL-TSLP----MLPSGLQELSVSDN  191 (622)
T ss_dssp             CCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC-SCCC----CCCTTCCEEECCSS
T ss_pred             cCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCC-CCCc----ccCCCCcEEECCCC
Confidence            9999999999888 543   4889999999999988875   356789999988664 4455    35688999999999


Q ss_pred             CCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeecccccCcccccceEEEEe-C-Ccc
Q 016966          242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTGIWCRQFRVEL-N-NKI  319 (379)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l-~-~~~  319 (379)
                      .+...+           .   .+++|+.|++++|.++.+|..  +++|+.|+++.+..... ...+++...|++ . ...
T Consensus       192 ~l~~l~-----------~---~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~l-p~~l~~L~~L~Ls~N~L~  254 (622)
T 3g06_A          192 QLASLP-----------T---LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSL-PVLPSELKELMVSGNRLT  254 (622)
T ss_dssp             CCSCCC-----------C---CCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCC-CCCCTTCCEEECCSSCCS
T ss_pred             CCCCCC-----------C---ccchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcC-CCCCCcCcEEECCCCCCC
Confidence            887632           1   246899999999988888764  58899998865544421 133455558888 3 333


Q ss_pred             cchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccC
Q 016966          320 CLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALN  373 (379)
Q Consensus       320 ~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~  373 (379)
                      .+|.   . +++|+.|++++|.   ++.+|..+..  +++|+.|++++|+....
T Consensus       255 ~lp~---~-~~~L~~L~Ls~N~---L~~lp~~l~~--l~~L~~L~L~~N~l~~~  299 (622)
T 3g06_A          255 SLPM---L-PSGLLSLSVYRNQ---LTRLPESLIH--LSSETTVNLEGNPLSER  299 (622)
T ss_dssp             CCCC---C-CTTCCEEECCSSC---CCSCCGGGGG--SCTTCEEECCSCCCCHH
T ss_pred             cCCc---c-cccCcEEeCCCCC---CCcCCHHHhh--ccccCEEEecCCCCCCc
Confidence            3555   2 5899999999997   7788877654  99999999999997653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=9.5e-19  Score=157.58  Aligned_cols=191  Identities=20%  Similarity=0.251  Sum_probs=162.9

Q ss_pred             CccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--CCccccCCC
Q 016966           84 STIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--LPSSLGLLS  161 (379)
Q Consensus        84 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--lp~~i~~l~  161 (379)
                      ..++++++|+++++.+..++.+..+++|+.|++++|.+.+        +++  +..+++|++|++++|.  ....+..++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~--------~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~  107 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD--------LAP--LKNLTKITELELSGNPLKNVSAIAGLQ  107 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--------CGG--GTTCCSCCEEECCSCCCSCCGGGTTCT
T ss_pred             HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCC--------Chh--HccCCCCCEEEccCCcCCCchhhcCCC
Confidence            4578999999999999888887799999999999976543        344  6889999999999998  334789999


Q ss_pred             CCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCC
Q 016966          162 NLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE  241 (379)
Q Consensus       162 ~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  241 (379)
                      +|++|++++|.+...+.+..+++|++|++++|.++.++. +..+++|++|++++|... .++.  +..+++|+.|++++|
T Consensus       108 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          108 SIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVS-DLTP--LANLSKLTTLKADDN  183 (308)
T ss_dssp             TCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSS
T ss_pred             CCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCC-CChh--hcCCCCCCEEECCCC
Confidence            999999999999885558999999999999999998885 889999999999997654 4554  789999999999999


Q ss_pred             CCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeeccc
Q 016966          242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYF  300 (379)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~  300 (379)
                      .+.+..            .+..+++|+.|++++|.+..++....+++|+.|+++.+...
T Consensus       184 ~l~~~~------------~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          184 KISDIS------------PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCCCCG------------GGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEE
T ss_pred             ccCcCh------------hhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeee
Confidence            988643            37889999999999999998875447899999999776654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.81  E-value=6.8e-19  Score=167.20  Aligned_cols=223  Identities=20%  Similarity=0.224  Sum_probs=176.3

Q ss_pred             ccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcEEEeecCCCCC--cccccCcCC
Q 016966          111 LELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKK  184 (379)
Q Consensus       111 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~  184 (379)
                      .+.+...++.        ...+|..+   .+++++|++++|.    .|..+..+++|++|++++|.+..  +..+..+++
T Consensus        56 ~~~v~c~~~~--------l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  124 (452)
T 3zyi_A           56 FSKVVCTRRG--------LSEVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS  124 (452)
T ss_dssp             SCEEECCSSC--------CSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             CcEEEECCCC--------cCccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCccc
Confidence            4566666633        45566654   3689999999998    57789999999999999999988  578999999


Q ss_pred             CcEEEeeCCcCcccchh-hcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcC
Q 016966          185 LEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKH  263 (379)
Q Consensus       185 L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~  263 (379)
                      |++|++++|.++.+|.. +..+++|++|++++|.. ..++...+..+++|+.|++++|.....-         ....+..
T Consensus       125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~~~~l~~i---------~~~~~~~  194 (452)
T 3zyi_A          125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYI---------SEGAFEG  194 (452)
T ss_dssp             CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEE---------CTTTTTT
T ss_pred             CCEEECCCCcCCccChhhhcccCCCCEEECCCCCc-ceeCHhHHhcCCcccEEeCCCCCCcccc---------ChhhccC
Confidence            99999999999988865 78899999999999774 5666655899999999999985443321         2446888


Q ss_pred             CCCCcEEEeeccCCCCCCccccccCCcEEEEEeecccccCcccccceEEEEeCCcccchHHHHHHhcccceeeccccccc
Q 016966          264 LPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQ  343 (379)
Q Consensus       264 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~  343 (379)
                      +++|+.|++++|.++.+|....+++|+.|+++.+...                  ...+..+.. +++|+.|++++|.  
T Consensus       195 l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~------------------~~~~~~~~~-l~~L~~L~L~~n~--  253 (452)
T 3zyi_A          195 LFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFP------------------EIRPGSFHG-LSSLKKLWVMNSQ--  253 (452)
T ss_dssp             CTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCS------------------EECGGGGTT-CTTCCEEECTTSC--
T ss_pred             CCCCCEEECCCCcccccccccccccccEEECcCCcCc------------------ccCcccccC-ccCCCEEEeCCCc--
Confidence            9999999999999998887557899999988544333                  112444555 4999999999998  


Q ss_pred             cccccccccccccCCCCcEEEecCCCCccCCCCC
Q 016966          344 DVDYFRNELVKVGSSHLKRLRLEGSDLALNPAES  377 (379)
Q Consensus       344 ~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  377 (379)
                       ++.++...+ .++++|++|++++|.....+++.
T Consensus       254 -l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~  285 (452)
T 3zyi_A          254 -VSLIERNAF-DGLASLVELNLAHNNLSSLPHDL  285 (452)
T ss_dssp             -CCEECTTTT-TTCTTCCEEECCSSCCSCCCTTS
T ss_pred             -CceECHHHh-cCCCCCCEEECCCCcCCccChHH
Confidence             666654433 35899999999999988877654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.80  E-value=8.8e-21  Score=171.71  Aligned_cols=215  Identities=15%  Similarity=0.138  Sum_probs=118.0

Q ss_pred             CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCCcccccCcC
Q 016966          107 ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPDISFVGYLK  183 (379)
Q Consensus       107 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~  183 (379)
                      .+++|+.|++++|.+        ..+++..|..+++|++|++++|.   .+ .+..+++|++|++++|.++..   ...+
T Consensus        32 ~~~~L~~L~L~~n~l--------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~l---~~~~   99 (317)
T 3o53_A           32 SAWNVKELDLSGNPL--------SQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQEL---LVGP   99 (317)
T ss_dssp             TGGGCSEEECTTSCC--------CCCCHHHHTTCTTCCEEECTTSCCEEEE-EETTCTTCCEEECCSSEEEEE---EECT
T ss_pred             cCCCCCEEECcCCcc--------CcCCHHHhhCCCcCCEEECCCCcCCcch-hhhhcCCCCEEECcCCccccc---cCCC
Confidence            345666666666543        23444445666666666666666   22 266666666666666665441   1225


Q ss_pred             CCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhh-c
Q 016966          184 KLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEEL-K  262 (379)
Q Consensus       184 ~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l-~  262 (379)
                      +|++|++++|.++.++.  ..+++|++|++++|......+.. ++.+++|+.|++++|.+....          +..+ .
T Consensus       100 ~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~----------~~~~~~  166 (317)
T 3o53_A          100 SIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVN----------FAELAA  166 (317)
T ss_dssp             TCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBC-TGGGSSEEEEECTTSCCCEEE----------GGGGGG
T ss_pred             CcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchh-hhccCCCCEEECCCCCCCccc----------HHHHhh
Confidence            66666666666665553  23566666666665543333322 556666666666666665432          2233 3


Q ss_pred             CCCCCcEEEeeccCCCCCCccccccCCcEEEEEeecccccCcccccceEEEEeCCcccchHHHHHHhcccceeecccccc
Q 016966          263 HLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQE  342 (379)
Q Consensus       263 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~  342 (379)
                      .+++|+.|++++|.++.++....+++|+.|+++.+...                   .++..+.. +++|+.|++++|. 
T Consensus       167 ~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~-------------------~l~~~~~~-l~~L~~L~L~~N~-  225 (317)
T 3o53_A          167 SSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-------------------FMGPEFQS-AAGVTWISLRNNK-  225 (317)
T ss_dssp             GTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCC-------------------EECGGGGG-GTTCSEEECTTSC-
T ss_pred             ccCcCCEEECCCCcCcccccccccccCCEEECCCCcCC-------------------cchhhhcc-cCcccEEECcCCc-
Confidence            45666666666666665554445666666666433322                   12222333 2556666666654 


Q ss_pred             ccccccccccccccCCCCcEEEecCCCCc
Q 016966          343 QDVDYFRNELVKVGSSHLKRLRLEGSDLA  371 (379)
Q Consensus       343 ~~l~~~~~~~~~~~~~~L~~L~l~~c~~l  371 (379)
                        ++.++..+.  .+++|+.|++++|+..
T Consensus       226 --l~~l~~~~~--~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          226 --LVLIEKALR--FSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             --CCEECTTCC--CCTTCCEEECTTCCCB
T ss_pred             --ccchhhHhh--cCCCCCEEEccCCCcc
Confidence              445554432  2556666666655544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.79  E-value=1.9e-18  Score=154.14  Aligned_cols=194  Identities=21%  Similarity=0.214  Sum_probs=163.6

Q ss_pred             CccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCC
Q 016966           84 STIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLL  160 (379)
Q Consensus        84 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l  160 (379)
                      ..+++++.++++++.+..+|... .++++.|++++|.+        ..+++..|..+++|++|++++|.   ++. .+.+
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l   76 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLL--------YTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTL   76 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCC--------SEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCC
T ss_pred             cccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcC--------CccCHHHhhcCCCCCEEECCCCccCcccC-CCCC
Confidence            45678999999999998888644 37899999999764        34555667899999999999998   443 3789


Q ss_pred             CCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEe
Q 016966          161 SNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYI  238 (379)
Q Consensus       161 ~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  238 (379)
                      ++|++|++++|.+.. |..+..+++|++|++++|+++.+|. .+..+++|++|++++|.. ..+|...+..+++|+.|++
T Consensus        77 ~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L  155 (290)
T 1p9a_G           77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSL  155 (290)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEEC
T ss_pred             CcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC-CccChhhcccccCCCEEEC
Confidence            999999999999998 7888999999999999999998884 688999999999999765 4566666789999999999


Q ss_pred             cCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc-cccCCcEEEEEeec
Q 016966          239 GRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL-LLEKLERYSIYIRR  298 (379)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~  298 (379)
                      ++|.+...+          ...+..+++|+.|++++|.++.+|..+ ..++|+.+.+..+.
T Consensus       156 ~~N~l~~l~----------~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          156 ANNNLTELP----------AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             TTSCCSCCC----------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             CCCcCCccC----------HHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence            999998753          345678999999999999999999877 57889999885444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.79  E-value=1.9e-18  Score=154.24  Aligned_cols=195  Identities=19%  Similarity=0.238  Sum_probs=157.1

Q ss_pred             CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcEEEeecCCCCCccccc
Q 016966          105 VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRTLSLCSCGLPDISFVG  180 (379)
Q Consensus       105 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~L~l~~~~l~~~~~~~  180 (379)
                      +..+++++++.+.++.        ...+|..++   +++++|++++|.    .+..+..+++|++|++++|.++..+..+
T Consensus         6 ~~~l~~l~~l~~~~~~--------l~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   74 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRN--------LTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG   74 (290)
T ss_dssp             EECSTTCCEEECTTSC--------CSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCS
T ss_pred             ccccCCccEEECCCCC--------CCcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCC
Confidence            3467889999999865        445665543   689999999998    4667899999999999999998833348


Q ss_pred             CcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHh
Q 016966          181 YLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEE  260 (379)
Q Consensus       181 ~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  260 (379)
                      .+++|++|++++|.++.+|..+..+++|++|++++|... .++...++.+++|+.|++++|.+....          +..
T Consensus        75 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~----------~~~  143 (290)
T 1p9a_G           75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLP----------PGL  143 (290)
T ss_dssp             CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCC----------TTT
T ss_pred             CCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccC----------hhh
Confidence            899999999999999999998999999999999997654 555444899999999999999998753          455


Q ss_pred             hcCCCCCcEEEeeccCCCCCCccc--cccCCcEEEEEeecccccCcccccceEEEEeCCcccchHHHHHHhcccceeecc
Q 016966          261 LKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELS  338 (379)
Q Consensus       261 l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~  338 (379)
                      +..+++|+.|++++|.++.+|...  .+++|+.|+++.+...                   .+|.++... ++|+.|++.
T Consensus       144 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-------------------~ip~~~~~~-~~L~~l~L~  203 (290)
T 1p9a_G          144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-------------------TIPKGFFGS-HLLPFAFLH  203 (290)
T ss_dssp             TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-------------------CCCTTTTTT-CCCSEEECC
T ss_pred             cccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-------------------ccChhhccc-ccCCeEEeC
Confidence            788999999999999999888765  5788888888444332                   345445553 788899998


Q ss_pred             ccc
Q 016966          339 ELQ  341 (379)
Q Consensus       339 ~~~  341 (379)
                      +|+
T Consensus       204 ~Np  206 (290)
T 1p9a_G          204 GNP  206 (290)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            887

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.79  E-value=2.7e-18  Score=152.21  Aligned_cols=170  Identities=21%  Similarity=0.235  Sum_probs=99.8

Q ss_pred             CCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcEEEeecCCCCC--cccccCc
Q 016966          109 PQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYL  182 (379)
Q Consensus       109 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l  182 (379)
                      ++++.|++++|.+        ..++...|.++++|++|++++|.    .+..+..+++|++|++++|.+..  +..+..+
T Consensus        28 ~~l~~L~ls~n~l--------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (276)
T 2z62_A           28 FSTKNLDLSFNPL--------RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL   99 (276)
T ss_dssp             TTCCEEECTTCCC--------CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred             CCccEEECCCCcc--------cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCC
Confidence            4566777766543        33444445666777777777766    33356667777777777777666  3556667


Q ss_pred             CCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCc-ccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHh
Q 016966          183 KKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLK-VIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEE  260 (379)
Q Consensus       183 ~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  260 (379)
                      ++|++|++++|.+..++. .+..+++|++|++++|.... .+|.. ++.+++|++|++++|.+.+..       ......
T Consensus       100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~-------~~~~~~  171 (276)
T 2z62_A          100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY-------CTDLRV  171 (276)
T ss_dssp             TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEEC-------GGGGHH
T ss_pred             ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcCC-------HHHhhh
Confidence            777777777776666554 46667777777777755443 23444 566777777777777665532       011222


Q ss_pred             hcCCCCCc-EEEeeccCCCCCCccc-cccCCcEEEE
Q 016966          261 LKHLPNLT-SLEVHVRDVSSLPRGL-LLEKLERYSI  294 (379)
Q Consensus       261 l~~l~~L~-~L~l~~~~~~~~~~~~-~~~~L~~L~l  294 (379)
                      +..++.|. .|++++|.+..++... ...+|+.|++
T Consensus       172 l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L  207 (276)
T 2z62_A          172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL  207 (276)
T ss_dssp             HHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEEC
T ss_pred             hhhccccceeeecCCCcccccCccccCCCcccEEEC
Confidence            33333333 6666666666554433 2334555555

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.79  E-value=4.7e-18  Score=150.16  Aligned_cols=191  Identities=23%  Similarity=0.297  Sum_probs=152.3

Q ss_pred             CccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCc-cccCCCCC
Q 016966           88 HFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPS-SLGLLSNL  163 (379)
Q Consensus        88 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~-~i~~l~~L  163 (379)
                      ..+.++++++.+..+|... .++++.|++++|.+        ..+++..|..+++|++|++++|.   +|. .+..+++|
T Consensus        17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l--------~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L   87 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKL--------SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL   87 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCC--------SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTC
T ss_pred             CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCC--------CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCC
Confidence            5678888888887777533 26799999999664        34565567889999999999987   544 35789999


Q ss_pred             cEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecC
Q 016966          164 RTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGR  240 (379)
Q Consensus       164 ~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  240 (379)
                      ++|++++|.+.. + ..+..+++|++|++++|.++.++. .+..+++|++|++++|.. ..++...++.+++|+.|++++
T Consensus        88 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~  166 (270)
T 2o6q_A           88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYN  166 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcC-CccCHhHccCCcccceeEecC
Confidence            999999999888 4 567889999999999999987775 468899999999999764 456655578899999999999


Q ss_pred             CCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc--cccCCcEEEEEeec
Q 016966          241 ESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSIYIRR  298 (379)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~  298 (379)
                      |.+....          +..+..+++|+.|++++|.++.++...  .+++|+.|++..+.
T Consensus       167 n~l~~~~----------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          167 NQLKRVP----------EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             SCCSCCC----------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CcCcEeC----------hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence            9887753          455788899999999999998887754  57889999885444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.79  E-value=2.8e-18  Score=148.73  Aligned_cols=196  Identities=15%  Similarity=0.223  Sum_probs=159.5

Q ss_pred             CcCCCCCCccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecC-CC-
Q 016966           77 CREWSDGSTIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTD-MI-  152 (379)
Q Consensus        77 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~-  152 (379)
                      ++..+.  ..+++++|++++|.+..++.  +..+++|+.|++++|..       ...+++..|.++++|++|++++ +. 
T Consensus        23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~-------l~~i~~~~f~~l~~L~~L~l~~~n~l   93 (239)
T 2xwt_C           23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT-------LQQLESHSFYNLSKVTHIEIRNTRNL   93 (239)
T ss_dssp             CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSS-------CCEECTTTEESCTTCCEEEEEEETTC
T ss_pred             ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCC-------cceeCHhHcCCCcCCcEEECCCCCCe
Confidence            334444  45689999999999977775  45899999999999642       4456766788999999999998 66 


Q ss_pred             ---CCccccCCCCCcEEEeecCCCCCcccccCcCCCc---EEEeeCC-cCcccch-hhcCCCCCC-EEeccCCCCCcccC
Q 016966          153 ---LPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLE---ILCLRGS-DIVKLPV-EVGELTWLK-LLDLRDCCFLKVIP  223 (379)
Q Consensus       153 ---lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~---~L~l~~~-~l~~lp~-~~~~l~~L~-~L~l~~~~~~~~~~  223 (379)
                         .+..+..+++|++|++++|.++..+.+..+++|+   +|++++| .++.+|. .+..+++|+ +|++++|... .+|
T Consensus        94 ~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~  172 (239)
T 2xwt_C           94 TYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQ  172 (239)
T ss_dssp             CEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EEC
T ss_pred             eEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccC
Confidence               3457889999999999999998833388888888   9999999 9998886 488899999 9999997654 777


Q ss_pred             hhhhCCCCCCcEEEecCCC-CcChhhhhhcccccchHhhcCC-CCCcEEEeeccCCCCCCccccccCCcEEEE
Q 016966          224 PNILSKLSHLEELYIGRES-FVDWEEEVEGVKNASLEELKHL-PNLTSLEVHVRDVSSLPRGLLLEKLERYSI  294 (379)
Q Consensus       224 ~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  294 (379)
                      ...+.. ++|+.|++++|. +...+          ...+..+ ++|+.|++++|.++.+|.. .+++|+.|++
T Consensus       173 ~~~~~~-~~L~~L~L~~n~~l~~i~----------~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l  233 (239)
T 2xwt_C          173 GYAFNG-TKLDAVYLNKNKYLTVID----------KDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA  233 (239)
T ss_dssp             TTTTTT-CEEEEEECTTCTTCCEEC----------TTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred             HhhcCC-CCCCEEEcCCCCCcccCC----------HHHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence            764444 899999999995 77643          4567888 9999999999999988876 6788998887

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.79  E-value=9.8e-20  Score=174.33  Aligned_cols=215  Identities=15%  Similarity=0.141  Sum_probs=168.5

Q ss_pred             CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCCcccccCcC
Q 016966          107 ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPDISFVGYLK  183 (379)
Q Consensus       107 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~  183 (379)
                      .+++|+.|++++|.+        ..+++..|..+++|++|++++|.   .+ .+..+++|++|++++|.++..+   ..+
T Consensus        32 ~~~~L~~L~Ls~n~l--------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~l~---~~~   99 (487)
T 3oja_A           32 SAWNVKELDLSGNPL--------SQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELL---VGP   99 (487)
T ss_dssp             TGGGCCEEECCSSCC--------CCCCGGGGTTCTTCCEEECTTSCCEEEE-ECTTCTTCCEEECCSSEEEEEE---ECT
T ss_pred             cCCCccEEEeeCCcC--------CCCCHHHHhCCCCCCEEEeeCCCCCCCc-ccccCCCCCEEEecCCcCCCCC---CCC
Confidence            455899999999764        34555667899999999999998   33 3888999999999999877621   237


Q ss_pred             CCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhc-
Q 016966          184 KLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELK-  262 (379)
Q Consensus       184 ~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-  262 (379)
                      +|++|++++|.++.++.  ..+++|++|++++|......|.. ++.+++|+.|++++|.+.+..          +..+. 
T Consensus       100 ~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~----------~~~l~~  166 (487)
T 3oja_A          100 SIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVN----------FAELAA  166 (487)
T ss_dssp             TCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCEEE----------GGGGGG
T ss_pred             CcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCCCcC----------hHHHhh
Confidence            89999999999988775  35788999999998766655555 788999999999999887643          45554 


Q ss_pred             CCCCCcEEEeeccCCCCCCccccccCCcEEEEEeecccccCcccccceEEEEeCCcccchHHHHHHhcccceeecccccc
Q 016966          263 HLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQE  342 (379)
Q Consensus       263 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~  342 (379)
                      .+++|+.|++++|.++.++....+++|+.|+++.+...                   .+|+.+.. +++|+.|++++|. 
T Consensus       167 ~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~-------------------~~~~~~~~-l~~L~~L~Ls~N~-  225 (487)
T 3oja_A          167 SSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-------------------FMGPEFQS-AAGVTWISLRNNK-  225 (487)
T ss_dssp             GTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCC-------------------EECGGGGG-GTTCSEEECTTSC-
T ss_pred             hCCcccEEecCCCccccccccccCCCCCEEECCCCCCC-------------------CCCHhHcC-CCCccEEEecCCc-
Confidence            78899999999999987776667889999988544433                   23444555 4899999999997 


Q ss_pred             ccccccccccccccCCCCcEEEecCCCCc
Q 016966          343 QDVDYFRNELVKVGSSHLKRLRLEGSDLA  371 (379)
Q Consensus       343 ~~l~~~~~~~~~~~~~~L~~L~l~~c~~l  371 (379)
                        +..+|..+.  .+++|+.|++++|+..
T Consensus       226 --l~~lp~~l~--~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          226 --LVLIEKALR--FSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             --CCEECTTCC--CCTTCCEEECTTCCBC
T ss_pred             --Ccccchhhc--cCCCCCEEEcCCCCCc
Confidence              777887654  3899999999999876

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.78  E-value=1.2e-17  Score=158.35  Aligned_cols=199  Identities=19%  Similarity=0.189  Sum_probs=110.8

Q ss_pred             hhCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEec
Q 016966          137 FKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDL  213 (379)
Q Consensus       137 ~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l  213 (379)
                      |.++++|++|++++|.   +|..   ..+|++|++++|.+...+.++.+++|++|++++|.++.+|..   .++|++|++
T Consensus       149 ~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l  222 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVA  222 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEEC
T ss_pred             cCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCC---cCcccEEEC
Confidence            4566666666666665   3332   236666666666666533566666666666666666665532   246666777


Q ss_pred             cCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEE
Q 016966          214 RDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYS  293 (379)
Q Consensus       214 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~  293 (379)
                      ++|... .+|.  ++.+++|+.|++++|.+.+.+           .   ..++|+.|++++|.+..+|..  +++|+.|+
T Consensus       223 ~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~l~-----------~---~~~~L~~L~l~~N~l~~l~~~--~~~L~~L~  283 (454)
T 1jl5_A          223 GNNILE-ELPE--LQNLPFLTTIYADNNLLKTLP-----------D---LPPSLEALNVRDNYLTDLPEL--PQSLTFLD  283 (454)
T ss_dssp             CSSCCS-SCCC--CTTCTTCCEEECCSSCCSSCC-----------S---CCTTCCEEECCSSCCSCCCCC--CTTCCEEE
T ss_pred             cCCcCC-cccc--cCCCCCCCEEECCCCcCCccc-----------c---cccccCEEECCCCcccccCcc--cCcCCEEE
Confidence            665433 5553  567777777777777666532           1   124555555555555544432  24444444


Q ss_pred             EEeecccc------------------cCccccc-ceEEEEe-CCc-ccchHHHHHHhcccceeecccccccccccccccc
Q 016966          294 IYIRRYFS------------------RKTGIWC-RQFRVEL-NNK-ICLKDSLIVQLQRIEDLELSELQEQDVDYFRNEL  352 (379)
Q Consensus       294 l~~~~~~~------------------~~~~~~~-~~~~L~l-~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~  352 (379)
                      ++.+....                  ...+.++ +...|++ .+. ..+|..    +++|+.|++++|.   ++.+|.  
T Consensus       284 ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~L~~N~---l~~lp~--  354 (454)
T 1jl5_A          284 VSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNH---LAEVPE--  354 (454)
T ss_dssp             CCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSC---CSCCCC--
T ss_pred             CcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccccc----CCcCCEEECCCCc---cccccc--
Confidence            43222111                  1112222 3335666 222 223332    3677777777776   566655  


Q ss_pred             ccccCCCCcEEEecCCCCcc
Q 016966          353 VKVGSSHLKRLRLEGSDLAL  372 (379)
Q Consensus       353 ~~~~~~~L~~L~l~~c~~l~  372 (379)
                         .+++|++|++++|+...
T Consensus       355 ---~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          355 ---LPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             ---CCTTCCEEECCSSCCSS
T ss_pred             ---hhhhccEEECCCCCCCc
Confidence               26788888888887776

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.78  E-value=1e-17  Score=148.02  Aligned_cols=175  Identities=25%  Similarity=0.309  Sum_probs=149.1

Q ss_pred             ccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CC-cccc
Q 016966           85 TIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LP-SSLG  158 (379)
Q Consensus        85 ~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp-~~i~  158 (379)
                      .++++++|++++|.+..++.  +..+++|+.|++++|.+        ..++..+|..+++|++|++++|.   +| ..+.
T Consensus        35 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--------~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  106 (270)
T 2o6q_A           35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL--------QTLPAGIFKELKNLETLWVTDNKLQALPIGVFD  106 (270)
T ss_dssp             CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC--------SCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc--------CeeChhhhcCCCCCCEEECCCCcCCcCCHhHcc
Confidence            45789999999999987775  55899999999999664        45777778999999999999998   44 4568


Q ss_pred             CCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCCCCCcccChhhhCCCCCCcE
Q 016966          159 LLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEE  235 (379)
Q Consensus       159 ~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  235 (379)
                      .+++|++|++++|.+..  +..+..+++|++|++++|.++.+|.. +..+++|++|++++|.. ..++...+..+++|++
T Consensus       107 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~  185 (270)
T 2o6q_A          107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKT  185 (270)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCE
T ss_pred             cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC-cEeChhHhccCCCcCE
Confidence            89999999999999988  45678999999999999999988865 78999999999999765 4455554789999999


Q ss_pred             EEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC
Q 016966          236 LYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS  278 (379)
Q Consensus       236 L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  278 (379)
                      |++++|.+...+          ...+..+++|+.|++++|.+.
T Consensus       186 L~L~~N~l~~~~----------~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          186 LKLDNNQLKRVP----------EGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             EECCSSCCSCCC----------TTTTTTCTTCCEEECCSSCBC
T ss_pred             EECCCCcCCcCC----------HHHhccccCCCEEEecCCCee
Confidence            999999988753          445788999999999999876

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.78  E-value=2.3e-18  Score=152.66  Aligned_cols=195  Identities=21%  Similarity=0.170  Sum_probs=158.5

Q ss_pred             ccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCcccc
Q 016966           85 TIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLG  158 (379)
Q Consensus        85 ~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~  158 (379)
                      ..+++++|++++|.+..++.  +..+++|+.|++++|.+        ..+++..|..+++|++|++++|.    .+..+.
T Consensus        26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   97 (276)
T 2z62_A           26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--------QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS   97 (276)
T ss_dssp             SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCC--------CEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred             CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcC--------CccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence            45689999999999976664  55899999999999754        45666667899999999999998    556789


Q ss_pred             CCCCCcEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcc--cchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCc
Q 016966          159 LLSNLRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVK--LPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLE  234 (379)
Q Consensus       159 ~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  234 (379)
                      .+++|++|++++|.+.. + ..++.+++|++|++++|.+..  +|..+..+++|++|++++|..... +...+..+++|+
T Consensus        98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~  176 (276)
T 2z62_A           98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMP  176 (276)
T ss_dssp             TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE-CGGGGHHHHTCT
T ss_pred             CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC-CHHHhhhhhhcc
Confidence            99999999999999988 3 468999999999999999986  788999999999999999875544 333355555555


Q ss_pred             ----EEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc--cccCCcEEEEEeecc
Q 016966          235 ----ELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSIYIRRY  299 (379)
Q Consensus       235 ----~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~  299 (379)
                          .|++++|.+...           +.......+|+.|++++|.++.+|...  .+++|+.|+++.+..
T Consensus       177 ~l~l~L~ls~n~l~~~-----------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          177 LLNLSLDLSLNPMNFI-----------QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             TCCEEEECCSSCCCEE-----------CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred             ccceeeecCCCccccc-----------CccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence                899999998764           233334458999999999999888765  589999999865543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.78  E-value=4.5e-18  Score=147.46  Aligned_cols=203  Identities=16%  Similarity=0.196  Sum_probs=143.4

Q ss_pred             CCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----C-CccccCCCCCcEEEeec-C
Q 016966           98 KPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----L-PSSLGLLSNLRTLSLCS-C  171 (379)
Q Consensus        98 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----l-p~~i~~l~~L~~L~l~~-~  171 (379)
                      .+..+|.  -.++++.|++++|.        ...+++..|..+++|++|++++|.    + +..+..+++|++|++++ |
T Consensus        22 ~l~~ip~--~~~~l~~L~l~~n~--------l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n   91 (239)
T 2xwt_C           22 DIQRIPS--LPPSTQTLKLIETH--------LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR   91 (239)
T ss_dssp             SCSSCCC--CCTTCCEEEEESCC--------CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET
T ss_pred             CccccCC--CCCcccEEEEeCCc--------ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC
Confidence            3666776  34478999999865        445666667888899999998884    3 34678888889999888 7


Q ss_pred             CCCC-c-ccccCcCCCcEEEeeCCcCcccchhhcCCCCCC---EEeccCCCCCcccChhhhCCCCCCc-EEEecCCCCcC
Q 016966          172 GLPD-I-SFVGYLKKLEILCLRGSDIVKLPVEVGELTWLK---LLDLRDCCFLKVIPPNILSKLSHLE-ELYIGRESFVD  245 (379)
Q Consensus       172 ~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~---~L~l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~  245 (379)
                      .++. + ..+..+++|++|++++|.++.+|. +..+++|+   +|++++|.....++...+..+++|+ .|++++|.+..
T Consensus        92 ~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~  170 (239)
T 2xwt_C           92 NLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS  170 (239)
T ss_dssp             TCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE
T ss_pred             CeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc
Confidence            8877 3 567788888888888888888886 77777777   8888887355666665577888888 88888887765


Q ss_pred             hhhhhhcccccchHhhcCCCCCcEEEeeccC-CCCCCccccccCCcEEEEEeecccccCcccccceEEEEeCCcccchHH
Q 016966          246 WEEEVEGVKNASLEELKHLPNLTSLEVHVRD-VSSLPRGLLLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDS  324 (379)
Q Consensus       246 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~  324 (379)
                      .+          ...+.. ++|+.|++++|. ++.++...                                        
T Consensus       171 i~----------~~~~~~-~~L~~L~L~~n~~l~~i~~~~----------------------------------------  199 (239)
T 2xwt_C          171 VQ----------GYAFNG-TKLDAVYLNKNKYLTVIDKDA----------------------------------------  199 (239)
T ss_dssp             EC----------TTTTTT-CEEEEEECTTCTTCCEECTTT----------------------------------------
T ss_pred             cC----------HhhcCC-CCCCEEEcCCCCCcccCCHHH----------------------------------------
Confidence            32          122233 677777777773 66554321                                        


Q ss_pred             HHHHh-cccceeeccccccccccccccccccccCCCCcEEEecCCCC
Q 016966          325 LIVQL-QRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDL  370 (379)
Q Consensus       325 ~~~~~-~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~  370 (379)
                      +.. + ++|+.|++++|.   ++.++..    .|++|+.|++.++..
T Consensus       200 ~~~-l~~~L~~L~l~~N~---l~~l~~~----~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          200 FGG-VYSGPSLLDVSQTS---VTALPSK----GLEHLKELIARNTWT  238 (239)
T ss_dssp             TTT-CSBCCSEEECTTCC---CCCCCCT----TCTTCSEEECTTC--
T ss_pred             hhc-cccCCcEEECCCCc---cccCChh----HhccCceeeccCccC
Confidence            001 3 677788888876   6666653    378888888887764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.77  E-value=2.5e-17  Score=156.16  Aligned_cols=252  Identities=18%  Similarity=0.191  Sum_probs=151.1

Q ss_pred             CCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCC
Q 016966           87 KHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNL  163 (379)
Q Consensus        87 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L  163 (379)
                      +++++|++++|.+..+|.+..+++|+.|++++|.+..        +|..    ..+|++|++++|.   +| .++.+++|
T Consensus       131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~--------lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L  197 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK--------LPDL----PPSLEFIAAGNNQLEELP-ELQNLPFL  197 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC--------CCCC----CTTCCEEECCSSCCSSCC-CCTTCTTC
T ss_pred             CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc--------cCCC----cccccEEECcCCcCCcCc-cccCCCCC
Confidence            5788888888888778877788999999999976533        3331    3488889998888   66 58888888


Q ss_pred             cEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCC
Q 016966          164 RTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRES  242 (379)
Q Consensus       164 ~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  242 (379)
                      ++|++++|.+.. |...   ++|++|++++|.+..+| .++.+++|++|++++|... .+|.    .+++|+.|++++|.
T Consensus       198 ~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~  268 (454)
T 1jl5_A          198 TAIYADNNSLKKLPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNY  268 (454)
T ss_dssp             CEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSC
T ss_pred             CEEECCCCcCCcCCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCCc
Confidence            888888888777 3322   47888888888888888 4778888888888886543 3443    23667777777776


Q ss_pred             CcChhhhhhc------ccccchHhhcC-CCCCcEEEeeccCCCCCCccccccCCcEEEEEeecccccCccc-ccceEEEE
Q 016966          243 FVDWEEEVEG------VKNASLEELKH-LPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTGI-WCRQFRVE  314 (379)
Q Consensus       243 ~~~~~~~~~~------~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~  314 (379)
                      +.+.+.....      ... ....+.. .++|+.|++++|.++.++..  .++|+.|+++.+....  .+. +++...|+
T Consensus       269 l~~l~~~~~~L~~L~ls~N-~l~~l~~~~~~L~~L~l~~N~l~~i~~~--~~~L~~L~Ls~N~l~~--lp~~~~~L~~L~  343 (454)
T 1jl5_A          269 LTDLPELPQSLTFLDVSEN-IFSGLSELPPNLYYLNASSNEIRSLCDL--PPSLEELNVSNNKLIE--LPALPPRLERLI  343 (454)
T ss_dssp             CSCCCCCCTTCCEEECCSS-CCSEESCCCTTCCEEECCSSCCSEECCC--CTTCCEEECCSSCCSC--CCCCCTTCCEEE
T ss_pred             ccccCcccCcCCEEECcCC-ccCcccCcCCcCCEEECcCCcCCcccCC--cCcCCEEECCCCcccc--ccccCCcCCEEE
Confidence            6553200000      000 0000001 13556666665555544321  2588899886554432  333 35556888


Q ss_pred             e--CCcccchHHHHHHhcccceeeccccccccccc---cccccccc-----------cCCCCcEEEecCCCCcc
Q 016966          315 L--NNKICLKDSLIVQLQRIEDLELSELQEQDVDY---FRNELVKV-----------GSSHLKRLRLEGSDLAL  372 (379)
Q Consensus       315 l--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~---~~~~~~~~-----------~~~~L~~L~l~~c~~l~  372 (379)
                      +  +....+|.    .+++|++|++++|.   +..   +|..+..-           .+++|++|++++|+...
T Consensus       344 L~~N~l~~lp~----~l~~L~~L~L~~N~---l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          344 ASFNHLAEVPE----LPQNLKQLHVEYNP---LREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE  410 (454)
T ss_dssp             CCSSCCSCCCC----CCTTCCEEECCSSC---CSSCCCCCTTCCEEECCC------------------------
T ss_pred             CCCCccccccc----hhhhccEEECCCCC---CCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence            8  33334565    25999999999998   444   55544320           12889999999999887

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.77  E-value=8.7e-18  Score=148.58  Aligned_cols=175  Identities=20%  Similarity=0.252  Sum_probs=140.8

Q ss_pred             CCccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCcccc
Q 016966           83 GSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLG  158 (379)
Q Consensus        83 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~  158 (379)
                      ...+++++.|.+.++.+..++.+..+++|+.|++++|.+.+        ++  .+..+++|++|++++|.    .+..+.
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~--------~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~  106 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD--------IS--ALKELTNLTYLILTGNQLQSLPNGVFD  106 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC--------CG--GGTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC--------ch--hhcCCCCCCEEECCCCccCccChhHhc
Confidence            35677899999999988888888889999999999976543        22  36788999999999988    334478


Q ss_pred             CCCCCcEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCCCCCcccChhhhCCCCCCcE
Q 016966          159 LLSNLRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEE  235 (379)
Q Consensus       159 ~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  235 (379)
                      .+++|++|++++|.+.. + ..++.+++|++|++++|.++.+|.. +..+++|++|++++|... .++...++.+++|++
T Consensus       107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~  185 (272)
T 3rfs_A          107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKD  185 (272)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCE
Confidence            89999999999999888 4 4578899999999999988888764 578999999999997654 455544688999999


Q ss_pred             EEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC
Q 016966          236 LYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS  278 (379)
Q Consensus       236 L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  278 (379)
                      |++++|.+.+..          +..++.+++|+.|++++|.+.
T Consensus       186 L~L~~N~l~~~~----------~~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          186 LRLYQNQLKSVP----------DGVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             EECCSSCCSCCC----------TTTTTTCTTCCEEECCSSCBC
T ss_pred             EECCCCcCCccC----------HHHHhCCcCCCEEEccCCCcc
Confidence            999999887643          455788899999999888765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.77  E-value=8.5e-19  Score=155.09  Aligned_cols=218  Identities=19%  Similarity=0.181  Sum_probs=167.7

Q ss_pred             cCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--CCccccCCCCC
Q 016966           86 IKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--LPSSLGLLSNL  163 (379)
Q Consensus        86 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--lp~~i~~l~~L  163 (379)
                      +..+..+.+..+.+........+++|+.|.+.+|.+..        ++.  +..+++|++|++++|.  ....+..+++|
T Consensus        18 ~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~--------~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L   87 (272)
T 3rfs_A           18 FAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKS--------VQG--IQYLPNVRYLALGGNKLHDISALKELTNL   87 (272)
T ss_dssp             HHHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCC--------CTT--GGGCTTCCEEECTTSCCCCCGGGTTCTTC
T ss_pred             HHHHHHHHhcCcccccccccccccceeeeeeCCCCccc--------ccc--cccCCCCcEEECCCCCCCCchhhcCCCCC
Confidence            33444555555555444455578999999999976533        332  5789999999999998  44478999999


Q ss_pred             cEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecC
Q 016966          164 RTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGR  240 (379)
Q Consensus       164 ~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  240 (379)
                      ++|++++|.++. + ..++.+++|++|++++|.++.+|.. +..+++|++|++++|... .++...++.+++|+.|++++
T Consensus        88 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~  166 (272)
T 3rfs_A           88 TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSY  166 (272)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCC
Confidence            999999999988 4 5578999999999999999988764 789999999999998654 55555578999999999999


Q ss_pred             CCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc--cccCCcEEEEEeecccccCcccccceEEEEeCCc
Q 016966          241 ESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNK  318 (379)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~  318 (379)
                      |.+.+..          +..++.+++|+.|++++|.+..++...  .+++|+.|++..+...                  
T Consensus       167 n~l~~~~----------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------------------  218 (272)
T 3rfs_A          167 NQLQSLP----------EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------------------  218 (272)
T ss_dssp             SCCCCCC----------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------------------
T ss_pred             CCcCccC----------HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------------------
Confidence            9988653          455788999999999999999777654  6899999998544322                  


Q ss_pred             ccchHHHHHHhcccceeecccccccccccccccc
Q 016966          319 ICLKDSLIVQLQRIEDLELSELQEQDVDYFRNEL  352 (379)
Q Consensus       319 ~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~  352 (379)
                             .. ++.|+.|.+..|.  ....+|..+
T Consensus       219 -------~~-~~~l~~l~~~~n~--~~g~ip~~~  242 (272)
T 3rfs_A          219 -------CT-CPGIRYLSEWINK--HSGVVRNSA  242 (272)
T ss_dssp             -------CC-TTTTHHHHHHHHH--TGGGBBCTT
T ss_pred             -------cc-CcHHHHHHHHHHh--CCCcccCcc
Confidence                   01 3667777777776  444555543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.77  E-value=8.2e-19  Score=158.37  Aligned_cols=215  Identities=18%  Similarity=0.202  Sum_probs=150.2

Q ss_pred             ccEEEEeCCCCCC--CCCCC--------CCCCccEEEeecCCCCCCCCCCCcccChhhh-hCCCceeEEEecCCC---CC
Q 016966           89 FTSIVLHGIKPNL--LPEVL--------ECPQLELLFIRGGGRDDPWETSPVTIPDNFF-KSMIEVRVVNLTDMI---LP  154 (379)
Q Consensus        89 l~~L~l~~~~~~~--~~~~~--------~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~---lp  154 (379)
                      +++|+++++.+..  ++...        .+++|+.|++++|.+       ...+|..+| ..+++|++|++++|.   .|
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l-------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  137 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV-------TGTAPPPLLEATGPDLNILNLRNVSWATRD  137 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBC-------BSCCCCCSSSCCSCCCSEEEEESCBCSSSS
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcc-------cchhHHHHHHhcCCCccEEEccCCCCcchh
Confidence            6667777666522  33222        478888888888665       334555543 778888888888887   55


Q ss_pred             ccccCC-----CCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcc---cchhh--cCCCCCCEEeccCCCCCc--
Q 016966          155 SSLGLL-----SNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVK---LPVEV--GELTWLKLLDLRDCCFLK--  220 (379)
Q Consensus       155 ~~i~~l-----~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~---lp~~~--~~l~~L~~L~l~~~~~~~--  220 (379)
                      ..++.+     ++|++|++++|.+..  +..++.+++|++|++++|.+..   +|..+  ..+++|++|++++|....  
T Consensus       138 ~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~  217 (312)
T 1wwl_A          138 AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS  217 (312)
T ss_dssp             SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH
T ss_pred             HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH
Confidence            556655     788888888888877  4778888888888888887653   34444  788888888888876542  


Q ss_pred             ccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeeccc
Q 016966          221 VIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYF  300 (379)
Q Consensus       221 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~  300 (379)
                      .++...+..+++|+.|++++|.+.+..         ....+..+++|+.|++++|.++.+|..+. ++|+.|+++.+...
T Consensus       218 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~---------~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~  287 (312)
T 1wwl_A          218 GVCSALAAARVQLQGLDLSHNSLRDAA---------GAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRLD  287 (312)
T ss_dssp             HHHHHHHHTTCCCSEEECTTSCCCSSC---------CCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCCC
T ss_pred             HHHHHHHhcCCCCCEEECCCCcCCccc---------chhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECCCCCCC
Confidence            344444567888888888888887632         12345567888888888888888887655 77888877544433


Q ss_pred             ccCcccccceEEEEeCCcccchHHHHHHhcccceeeccccc
Q 016966          301 SRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQ  341 (379)
Q Consensus       301 ~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  341 (379)
                                         ..|. +.. +++|++|++++|+
T Consensus       288 -------------------~~p~-~~~-l~~L~~L~L~~N~  307 (312)
T 1wwl_A          288 -------------------RNPS-PDE-LPQVGNLSLKGNP  307 (312)
T ss_dssp             -------------------SCCC-TTT-SCEEEEEECTTCT
T ss_pred             -------------------CChh-Hhh-CCCCCEEeccCCC
Confidence                               1222 333 4888888888887

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.75  E-value=1.3e-17  Score=164.75  Aligned_cols=139  Identities=24%  Similarity=0.193  Sum_probs=115.3

Q ss_pred             cCcCCCCCCccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-
Q 016966           76 GCREWSDGSTIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-  152 (379)
Q Consensus        76 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-  152 (379)
                      ++...|. ..++.+++|++++|.+..+++  +..+++|+.|++++|.        +..+++..|.++++|++|+|++|. 
T Consensus        42 ~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~--------i~~i~~~~f~~L~~L~~L~Ls~N~l  112 (635)
T 4g8a_A           42 NFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--------IQTIEDGAYQSLSHLSTLILTGNPI  112 (635)
T ss_dssp             CCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC--------CCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             CcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc--------CCCcChhHhcCCCCCCEEEccCCcC
Confidence            4445554 456789999999999988875  5589999999999975        456777788999999999999998 


Q ss_pred             --CC-ccccCCCCCcEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCc--ccchhhcCCCCCCEEeccCCCCCcccC
Q 016966          153 --LP-SSLGLLSNLRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIV--KLPVEVGELTWLKLLDLRDCCFLKVIP  223 (379)
Q Consensus       153 --lp-~~i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~  223 (379)
                        +| ..+..+.+|++|++++|.++. + ..++++++|++|++++|.+.  .+|..++.+++|++|++++|......+
T Consensus       113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  190 (635)
T 4g8a_A          113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  190 (635)
T ss_dssp             CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence              55 468999999999999999988 4 56899999999999999887  457788899999999999976544433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.75  E-value=3.8e-17  Score=147.09  Aligned_cols=179  Identities=19%  Similarity=0.234  Sum_probs=153.0

Q ss_pred             cCCCCCCccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CC
Q 016966           78 REWSDGSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LP  154 (379)
Q Consensus        78 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp  154 (379)
                      ...+....++++++|++++|.+..++.+..+++|+.|++++|.+.+        ++  .+..+++|++|++++|.   ++
T Consensus        54 ~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~--------~~--~~~~l~~L~~L~l~~n~l~~~~  123 (308)
T 1h6u_A           54 TTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--------VS--AIAGLQSIKTLDLTSTQITDVT  123 (308)
T ss_dssp             CCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC--------CG--GGTTCTTCCEEECTTSCCCCCG
T ss_pred             cCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCC--------ch--hhcCCCCCCEEECCCCCCCCch
Confidence            3444556789999999999999888887799999999999987643        33  36889999999999999   54


Q ss_pred             ccccCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCc
Q 016966          155 SSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLE  234 (379)
Q Consensus       155 ~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  234 (379)
                       .+..+++|++|++++|.+...+.+..+++|++|++++|.++.++. +..+++|++|++++|... .++.  +..+++|+
T Consensus       124 -~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~  198 (308)
T 1h6u_A          124 -PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKIS-DISP--LASLPNLI  198 (308)
T ss_dssp             -GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGG--GGGCTTCC
T ss_pred             -hhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccC-cChh--hcCCCCCC
Confidence             489999999999999999984448999999999999999998886 899999999999997754 4454  68999999


Q ss_pred             EEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCcc
Q 016966          235 ELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRG  283 (379)
Q Consensus       235 ~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  283 (379)
                      +|++++|.+.+.           + .+..+++|+.|++++|.++..|..
T Consensus       199 ~L~L~~N~l~~~-----------~-~l~~l~~L~~L~l~~N~i~~~~~~  235 (308)
T 1h6u_A          199 EVHLKNNQISDV-----------S-PLANTSNLFIVTLTNQTITNQPVF  235 (308)
T ss_dssp             EEECTTSCCCBC-----------G-GGTTCTTCCEEEEEEEEEECCCEE
T ss_pred             EEEccCCccCcc-----------c-cccCCCCCCEEEccCCeeecCCee
Confidence            999999999863           2 478999999999999998876654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=1.7e-17  Score=148.15  Aligned_cols=173  Identities=27%  Similarity=0.360  Sum_probs=144.0

Q ss_pred             CccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--CCccccCCC
Q 016966           84 STIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--LPSSLGLLS  161 (379)
Q Consensus        84 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--lp~~i~~l~  161 (379)
                      ..+++++.|++++|.+..++.+..+++|+.|++++|.+.+        +++  +..+++|++|++++|.  .+..+..++
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~--------~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~  112 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--------IKP--LANLKNLGWLFLDENKVKDLSSLKDLK  112 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--------CGG--GTTCTTCCEEECCSSCCCCGGGGTTCT
T ss_pred             hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCC--------Ccc--cccCCCCCEEECCCCcCCCChhhccCC
Confidence            4577899999999999888887789999999999976543        333  6789999999999998  334588999


Q ss_pred             CCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCC
Q 016966          162 NLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE  241 (379)
Q Consensus       162 ~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  241 (379)
                      +|++|++++|.+..++.+..+++|++|++++|.++.++ .+..+++|++|++++|.... ++.  +..+++|+.|++++|
T Consensus       113 ~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L~~L~L~~N  188 (291)
T 1h6t_A          113 KLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKN  188 (291)
T ss_dssp             TCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSS
T ss_pred             CCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcch-hhccCCCCCEEEccCCcccc-chh--hcCCCccCEEECCCC
Confidence            99999999999888777889999999999999998884 78899999999999976544 443  688999999999999


Q ss_pred             CCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCc
Q 016966          242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPR  282 (379)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  282 (379)
                      .+.+.            +.+..+++|+.|++++|.+...|.
T Consensus       189 ~i~~l------------~~l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          189 HISDL------------RALAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             CCCBC------------GGGTTCTTCSEEEEEEEEEECCCE
T ss_pred             cCCCC------------hhhccCCCCCEEECcCCcccCCcc
Confidence            88762            357888999999999988776554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.75  E-value=5.2e-17  Score=141.81  Aligned_cols=172  Identities=22%  Similarity=0.291  Sum_probs=132.8

Q ss_pred             CccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCC
Q 016966           88 HFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNL  163 (379)
Q Consensus        88 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L  163 (379)
                      ..++++++++.+..+|.... +.++.|++++|.+.        .+++..|.++++|++|++++|.    .+..+..+++|
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   85 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLA--------TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL   85 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCC--------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcC--------ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcC
Confidence            55678888888877776433 68899999986643        3455557888899999999887    44557888899


Q ss_pred             cEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecC
Q 016966          164 RTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGR  240 (379)
Q Consensus       164 ~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  240 (379)
                      ++|++++|.++. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|.. ..++...++.+++|++|++++
T Consensus        86 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~  164 (251)
T 3m19_A           86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLST  164 (251)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcC-CccCHHHcCcCcCCCEEECCC
Confidence            999999988887 3 5678888999999999988888765 57888899999988754 455554478888899999888


Q ss_pred             CCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCC
Q 016966          241 ESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSS  279 (379)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  279 (379)
                      |.+....          +..+..+++|+.|++++|.+..
T Consensus       165 N~l~~~~----------~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          165 NQLQSVP----------HGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             SCCSCCC----------TTTTTTCTTCCEEECCSCCBCT
T ss_pred             CcCCccC----------HHHHhCCCCCCEEEeeCCceeC
Confidence            8887643          4567778888888888887763

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.73  E-value=8.1e-17  Score=159.12  Aligned_cols=108  Identities=15%  Similarity=0.198  Sum_probs=91.8

Q ss_pred             CCccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CC-cc
Q 016966           83 GSTIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LP-SS  156 (379)
Q Consensus        83 ~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp-~~  156 (379)
                      +..++++++|++++|.+..+++  +..+++|++|++++|.        ...+|+..|.++++|++|++++|.   +| ..
T Consensus        72 f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~--------l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~  143 (635)
T 4g8a_A           72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP--------IQSLALGAFSGLSSLQKLVAVETNLASLENFP  143 (635)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--------CCEECGGGGTTCTTCCEEECTTSCCCCSTTCC
T ss_pred             HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc--------CCCCCHHHhcCCCCCCEEECCCCcCCCCChhh
Confidence            4678899999999999987775  4589999999999975        556788889999999999999998   44 45


Q ss_pred             ccCCCCCcEEEeecCCCCC---cccccCcCCCcEEEeeCCcCccc
Q 016966          157 LGLLSNLRTLSLCSCGLPD---ISFVGYLKKLEILCLRGSDIVKL  198 (379)
Q Consensus       157 i~~l~~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~l  198 (379)
                      ++.+++|++|++++|.+..   |..++.+++|++|++++|.++.+
T Consensus       144 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence            8999999999999999865   57788899999999998877643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.73  E-value=1.1e-17  Score=150.91  Aligned_cols=225  Identities=13%  Similarity=0.080  Sum_probs=163.1

Q ss_pred             CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccc--cCCCCCcEEEeecCCCCC--c--
Q 016966          107 ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSL--GLLSNLRTLSLCSCGLPD--I--  176 (379)
Q Consensus       107 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i--~~l~~L~~L~l~~~~l~~--~--  176 (379)
                      ....++.+.+..+.+.+..   ...+..  +..+++|++|++++|.    .|..+  ..+++|++|++++|.+..  +  
T Consensus        62 ~~~~l~~l~l~~~~~~~~~---~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~  136 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQL---LVGALR--VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL  136 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHH---HHHHHH--HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH
T ss_pred             hhcceeEEEEeCCcCCHHH---HHHHHH--hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh
Confidence            4455778888774432100   001111  1234679999999998    66666  889999999999999876  2  


Q ss_pred             --ccccCcCCCcEEEeeCCcCcccc-hhhcCCCCCCEEeccCCCCCcc--cC-hhhhCCCCCCcEEEecCCCCcChhhhh
Q 016966          177 --SFVGYLKKLEILCLRGSDIVKLP-VEVGELTWLKLLDLRDCCFLKV--IP-PNILSKLSHLEELYIGRESFVDWEEEV  250 (379)
Q Consensus       177 --~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~--~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~  250 (379)
                        ..+..+++|++|++++|.+..++ ..++.+++|++|++++|...+.  ++ ...++.+++|++|++++|.+...+.  
T Consensus       137 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~--  214 (310)
T 4glp_A          137 AELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG--  214 (310)
T ss_dssp             HHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH--
T ss_pred             HHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH--
Confidence              33457899999999999998776 5788999999999999876543  22 2224789999999999999875430  


Q ss_pred             hcccccchH-hhcCCCCCcEEEeeccCCCCC-Cccc-c---ccCCcEEEEEeecccccCcccccceEEEEeCCcccchHH
Q 016966          251 EGVKNASLE-ELKHLPNLTSLEVHVRDVSSL-PRGL-L---LEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDS  324 (379)
Q Consensus       251 ~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~-~~~~-~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~  324 (379)
                            .+. .++.+++|++|++++|.+... |..+ .   +++|+.|+++.+...                   .+|..
T Consensus       215 ------~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-------------------~lp~~  269 (310)
T 4glp_A          215 ------VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-------------------QVPKG  269 (310)
T ss_dssp             ------HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-------------------SCCSC
T ss_pred             ------HHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-------------------chhhh
Confidence                  122 247789999999999999965 6554 3   379999998544433                   23332


Q ss_pred             HHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCcc
Q 016966          325 LIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLAL  372 (379)
Q Consensus       325 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~  372 (379)
                      +   +++|+.|++++|.   ++.++.   ...+++|+.|++++|+...
T Consensus       270 ~---~~~L~~L~Ls~N~---l~~~~~---~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          270 L---PAKLRVLDLSSNR---LNRAPQ---PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             C---CSCCSCEECCSCC---CCSCCC---TTSCCCCSCEECSSTTTSC
T ss_pred             h---cCCCCEEECCCCc---CCCCch---hhhCCCccEEECcCCCCCC
Confidence            2   4899999999998   777654   2358999999999998764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.72  E-value=1.3e-17  Score=150.30  Aligned_cols=192  Identities=13%  Similarity=0.108  Sum_probs=127.2

Q ss_pred             CCccEEEEeCCCCC-CCCC-C--CCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCcccc
Q 016966           87 KHFTSIVLHGIKPN-LLPE-V--LECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLG  158 (379)
Q Consensus        87 ~~l~~L~l~~~~~~-~~~~-~--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~  158 (379)
                      +++++|++++|.+. ..+. +  ..+++|++|++++|.+...    ...++...+..+++|++|++++|.    .|..++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~----~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  166 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATG----RSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR  166 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSST----TSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccch----hhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence            45778888888773 3333 2  5677788888888766432    222222233467788888888877    445677


Q ss_pred             CCCCCcEEEeecCCCCC----c--ccccCcCCCcEEEeeCCcCcccchh----hcCCCCCCEEeccCCCCCcccChhhhC
Q 016966          159 LLSNLRTLSLCSCGLPD----I--SFVGYLKKLEILCLRGSDIVKLPVE----VGELTWLKLLDLRDCCFLKVIPPNILS  228 (379)
Q Consensus       159 ~l~~L~~L~l~~~~l~~----~--~~~~~l~~L~~L~l~~~~l~~lp~~----~~~l~~L~~L~l~~~~~~~~~~~~~l~  228 (379)
                      .+++|++|++++|.+..    +  ..++.+++|++|++++|.++.++..    +..+++|++|++++|......|.. ++
T Consensus       167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~  245 (310)
T 4glp_A          167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-AP  245 (310)
T ss_dssp             CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CS
T ss_pred             cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HH
Confidence            78888888888887543    1  2235677888888888877766542    456778888888887766555554 34


Q ss_pred             CC---CCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEe
Q 016966          229 KL---SHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYI  296 (379)
Q Consensus       229 ~l---~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~  296 (379)
                      .+   ++|++|++++|.+...           +..+.  ++|+.|++++|.++.+|....+++|+.|+++.
T Consensus       246 ~~~~~~~L~~L~Ls~N~l~~l-----------p~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~  303 (310)
T 4glp_A          246 RCMWSSALNSLNLSFAGLEQV-----------PKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDG  303 (310)
T ss_dssp             SCCCCTTCCCEECCSSCCCSC-----------CSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSS
T ss_pred             hccCcCcCCEEECCCCCCCch-----------hhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcC
Confidence            44   5888888888877753           33332  67888888888887766544677777777743

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.71  E-value=2.8e-18  Score=159.58  Aligned_cols=233  Identities=17%  Similarity=0.105  Sum_probs=125.8

Q ss_pred             ccCCccEEEEeCCCCCC-----CC-CCCCCCCccEEEeecCCCCCCCCCCCcccChhh------hhCCCceeEEEecCCC
Q 016966           85 TIKHFTSIVLHGIKPNL-----LP-EVLECPQLELLFIRGGGRDDPWETSPVTIPDNF------FKSMIEVRVVNLTDMI  152 (379)
Q Consensus        85 ~~~~l~~L~l~~~~~~~-----~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~------~~~l~~L~~L~l~~~~  152 (379)
                      ..+++++|++++|.+..     ++ .+..+++|+.|.+++|.++..    ...+|..+      |..+++|++|++++|.
T Consensus        30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l----~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~  105 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRV----KDEIPEALRLLLQALLKCPKLHTVRLSDNA  105 (386)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSC----GGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCcc----ccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence            34567777777776532     11 133566777777777554432    22333332      3566777777777766


Q ss_pred             --------CCccccCCCCCcEEEeecCCCCC--ccc----ccCc---------CCCcEEEeeCCcCc--ccc---hhhcC
Q 016966          153 --------LPSSLGLLSNLRTLSLCSCGLPD--ISF----VGYL---------KKLEILCLRGSDIV--KLP---VEVGE  204 (379)
Q Consensus       153 --------lp~~i~~l~~L~~L~l~~~~l~~--~~~----~~~l---------~~L~~L~l~~~~l~--~lp---~~~~~  204 (379)
                              +|..+..+++|++|++++|.+..  +..    +..+         ++|++|++++|.++  .+|   ..+..
T Consensus       106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  185 (386)
T 2ca6_A          106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  185 (386)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence                    23355666777777777776653  222    2233         67777777777664  333   34556


Q ss_pred             CCCCCEEeccCCCCCcc----cChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCC
Q 016966          205 LTWLKLLDLRDCCFLKV----IPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSL  280 (379)
Q Consensus       205 l~~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  280 (379)
                      +++|++|++++|.....    +....+..+++|++|++++|.+....      ...++..+..+++|+.|++++|.+...
T Consensus       186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g------~~~l~~~l~~~~~L~~L~L~~n~i~~~  259 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG------SSALAIALKSWPNLRELGLNDCLLSAR  259 (386)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH------HHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred             CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH------HHHHHHHHccCCCcCEEECCCCCCchh
Confidence            66777777777654321    11112566677777777766664211      112345566667777777776666532


Q ss_pred             -----Cccc-c--ccCCcEEEEEeecccccCcccccceEEEEeCCcccchHHHHHHhcccceeeccccc
Q 016966          281 -----PRGL-L--LEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQ  341 (379)
Q Consensus       281 -----~~~~-~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  341 (379)
                           +..+ .  +++|+.|+++.+....              .....+|..+...+++|++|++++|+
T Consensus       260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~--------------~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          260 GAAAVVDAFSKLENIGLQTLRLQYNEIEL--------------DAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHHHHHHHHTCSSCCCCEEECCSSCCBH--------------HHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             hHHHHHHHHhhccCCCeEEEECcCCcCCH--------------HHHHHHHHHHHhcCCCceEEEccCCc
Confidence                 2222 1  5566666664333220              00012444442223667777777666

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.71  E-value=1.9e-18  Score=160.71  Aligned_cols=240  Identities=15%  Similarity=0.154  Sum_probs=160.7

Q ss_pred             CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-------CCccc-------cCCCCCcEEEeecCC
Q 016966          107 ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-------LPSSL-------GLLSNLRTLSLCSCG  172 (379)
Q Consensus       107 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------lp~~i-------~~l~~L~~L~l~~~~  172 (379)
                      .+++|+.|++++|.+.+.    ........+..+++|++|++++|.       +|..+       ..+++|++|++++|.
T Consensus        30 ~~~~L~~L~L~~n~i~~~----~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~  105 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGTE----AARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  105 (386)
T ss_dssp             HCSCCCEEECTTSEECHH----HHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             cCCCccEEECCCCCCCHH----HHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence            678899999998765321    111111235678899999998874       34333       688999999999998


Q ss_pred             CCC------cccccCcCCCcEEEeeCCcCc-----ccchhhcCC---------CCCCEEeccCCCCC-cccCh--hhhCC
Q 016966          173 LPD------ISFVGYLKKLEILCLRGSDIV-----KLPVEVGEL---------TWLKLLDLRDCCFL-KVIPP--NILSK  229 (379)
Q Consensus       173 l~~------~~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l---------~~L~~L~l~~~~~~-~~~~~--~~l~~  229 (379)
                      +..      +..+..+++|++|++++|.++     .++..+..+         ++|++|++++|... ..++.  ..+..
T Consensus       106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  185 (386)
T 2ca6_A          106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  185 (386)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence            766      346778899999999999876     233334444         88999999988765 33442  22667


Q ss_pred             CCCCcEEEecCCCCcChhhhhhcccccchH-hhcCCCCCcEEEeeccCC-----CCCCccc-cccCCcEEEEEeeccccc
Q 016966          230 LSHLEELYIGRESFVDWEEEVEGVKNASLE-ELKHLPNLTSLEVHVRDV-----SSLPRGL-LLEKLERYSIYIRRYFSR  302 (379)
Q Consensus       230 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~-----~~~~~~~-~~~~L~~L~l~~~~~~~~  302 (379)
                      +++|++|++++|.+....      .....+ .+..+++|+.|++++|.+     ..+|..+ .+++|+.|+++.+.... 
T Consensus       186 ~~~L~~L~L~~n~l~~~g------~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~-  258 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPEG------IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA-  258 (386)
T ss_dssp             CTTCCEEECCSSCCCHHH------HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH-
T ss_pred             CCCcCEEECcCCCCCHhH------HHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch-
Confidence            889999999988876321      111233 777888999999998887     3455544 57889998884433220 


Q ss_pred             CcccccceEEEEeCCcccchHHHHH-Hhcccceeeccccccccccc-----cccccccccCCCCcEEEecCCCCccCC
Q 016966          303 KTGIWCRQFRVELNNKICLKDSLIV-QLQRIEDLELSELQEQDVDY-----FRNELVKVGSSHLKRLRLEGSDLALNP  374 (379)
Q Consensus       303 ~~~~~~~~~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~l~~-----~~~~~~~~~~~~L~~L~l~~c~~l~~~  374 (379)
                                   .....++..+.. .+++|+.|++++|.   +..     ++..+. ..+|+|++|++++|+.....
T Consensus       259 -------------~~~~~l~~~l~~~~~~~L~~L~L~~n~---i~~~g~~~l~~~l~-~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          259 -------------RGAAAVVDAFSKLENIGLQTLRLQYNE---IELDAVRTLKTVID-EKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             -------------HHHHHHHHHHHTCSSCCCCEEECCSSC---CBHHHHHHHHHHHH-HHCTTCCEEECTTSBSCTTS
T ss_pred             -------------hhHHHHHHHHhhccCCCeEEEECcCCc---CCHHHHHHHHHHHH-hcCCCceEEEccCCcCCcch
Confidence                         000112333322 03889999999997   555     555442 24799999999999877544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.71  E-value=1.8e-16  Score=145.40  Aligned_cols=189  Identities=15%  Similarity=0.114  Sum_probs=103.4

Q ss_pred             cCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeE-EEecCCC----CCcccc
Q 016966           86 IKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRV-VNLTDMI----LPSSLG  158 (379)
Q Consensus        86 ~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~-L~l~~~~----lp~~i~  158 (379)
                      ++++++|++++|.+..++.  +..+++|+.|++++|.+       ...++...|.+++++.. +.++++.    .|..+.
T Consensus        29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i-------~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~  101 (350)
T 4ay9_X           29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV-------LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ  101 (350)
T ss_dssp             CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTT-------CCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBC
T ss_pred             CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCC-------CCccChhHhhcchhhhhhhcccCCcccccCchhhh
Confidence            4566666666666666654  33666666666666543       33455555666665554 3334443    344566


Q ss_pred             CCCCCcEEEeecCCCCC-c-ccccCcCCCcEEEeeCC-cCcccchh-hcCC-CCCCEEeccCCCCCcccChhhhCCCCCC
Q 016966          159 LLSNLRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGS-DIVKLPVE-VGEL-TWLKLLDLRDCCFLKVIPPNILSKLSHL  233 (379)
Q Consensus       159 ~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~-~l~~lp~~-~~~l-~~L~~L~l~~~~~~~~~~~~~l~~l~~L  233 (379)
                      .+++|++|++++|.+.. + ..+....++..|++.++ .+..+|.. +..+ ..++.|++++|. +..++.. .....+|
T Consensus       102 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~-~f~~~~L  179 (350)
T 4ay9_X          102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNS-AFNGTQL  179 (350)
T ss_dssp             CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTT-SSTTEEE
T ss_pred             hccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChh-hccccch
Confidence            66666666666666655 2 23334445666666553 55555542 3333 246666666644 3445544 3345566


Q ss_pred             cEEEecC-CCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEE
Q 016966          234 EELYIGR-ESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSI  294 (379)
Q Consensus       234 ~~L~l~~-~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  294 (379)
                      +.|.+.+ |.+...+          ...++.+++|+.|++++|.++.+|.. .+.+|+.|.+
T Consensus       180 ~~l~l~~~n~l~~i~----------~~~f~~l~~L~~LdLs~N~l~~lp~~-~~~~L~~L~~  230 (350)
T 4ay9_X          180 DELNLSDNNNLEELP----------NDVFHGASGPVILDISRTRIHSLPSY-GLENLKKLRA  230 (350)
T ss_dssp             EEEECTTCTTCCCCC----------TTTTTTEECCSEEECTTSCCCCCCSS-SCTTCCEEEC
T ss_pred             hHHhhccCCcccCCC----------HHHhccCcccchhhcCCCCcCccChh-hhccchHhhh
Confidence            6666653 3344321          23456666666666666666666654 2445555543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=7.4e-17  Score=157.64  Aligned_cols=173  Identities=27%  Similarity=0.378  Sum_probs=148.0

Q ss_pred             CccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--CCccccCCC
Q 016966           84 STIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--LPSSLGLLS  161 (379)
Q Consensus        84 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--lp~~i~~l~  161 (379)
                      ..+++++.|++++|.+..++.+..+++|+.|++++|.+.+        +++  +..+++|+.|+|++|.  .+..+..++
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~--------~~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~  109 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--------IKP--LTNLKNLGWLFLDENKIKDLSSLKDLK  109 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCC--------CGG--GGGCTTCCEEECCSSCCCCCTTSTTCT
T ss_pred             hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCC--------Chh--hccCCCCCEEECcCCCCCCChhhccCC
Confidence            4677899999999999888888899999999999977544        333  6789999999999998  334789999


Q ss_pred             CCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCC
Q 016966          162 NLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE  241 (379)
Q Consensus       162 ~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  241 (379)
                      +|++|++++|.+..++.+..+++|+.|++++|.++.+ ..+..+++|++|++++|......|   +..+++|+.|++++|
T Consensus       110 ~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          110 KLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKN  185 (605)
T ss_dssp             TCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSS
T ss_pred             CCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCC
Confidence            9999999999998877899999999999999999988 478999999999999987655444   689999999999999


Q ss_pred             CCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCc
Q 016966          242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPR  282 (379)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  282 (379)
                      .+.+            ++.+..+++|+.|++++|.+...|.
T Consensus       186 ~i~~------------l~~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          186 HISD------------LRALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             CCCB------------CGGGTTCTTCSEEECCSEEEECCCC
T ss_pred             CCCC------------ChHHccCCCCCEEEccCCcCcCCcc
Confidence            8876            2468889999999999988775543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.70  E-value=9.6e-19  Score=166.53  Aligned_cols=270  Identities=16%  Similarity=0.124  Sum_probs=156.3

Q ss_pred             CccEEEEeCCCCCC-----CCC-CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--------C
Q 016966           88 HFTSIVLHGIKPNL-----LPE-VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--------L  153 (379)
Q Consensus        88 ~l~~L~l~~~~~~~-----~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--------l  153 (379)
                      ++++|++++|.+..     ++. +..+++|+.|++++|.+.+..   ...+...++...++|++|++++|.        +
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~---~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG---LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH---HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHH---HHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence            57777777777642     222 336777777777776542210   001112222334567777777776        2


Q ss_pred             CccccCCCCCcEEEeecCCCCC--ccccc-----CcCCCcEEEeeCCcCcc-----cchhhcCCCCCCEEeccCCCCCcc
Q 016966          154 PSSLGLLSNLRTLSLCSCGLPD--ISFVG-----YLKKLEILCLRGSDIVK-----LPVEVGELTWLKLLDLRDCCFLKV  221 (379)
Q Consensus       154 p~~i~~l~~L~~L~l~~~~l~~--~~~~~-----~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~  221 (379)
                      +..+..+++|++|++++|.+..  +..+.     .+++|++|++++|.++.     ++..+..+++|++|++++|.....
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            4445566777888887777655  33333     24577888888777764     466666777888888877654332


Q ss_pred             ----cChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCc-cc------cccCCc
Q 016966          222 ----IPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPR-GL------LLEKLE  290 (379)
Q Consensus       222 ----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~------~~~~L~  290 (379)
                          +.......+++|++|++++|.+....      ...++..+..+++|+.|++++|.+..... .+      ..++|+
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~------~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~  316 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKG------CGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE  316 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHH------HHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCC
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHH------HHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccce
Confidence                11222345777888888877766432      11234556667788888888777652211 11      125777


Q ss_pred             EEEEEeecccccC---cc----cccceEEEEe-CCcccc--hHHHHHH----hcccceeecccccccccc-----ccccc
Q 016966          291 RYSIYIRRYFSRK---TG----IWCRQFRVEL-NNKICL--KDSLIVQ----LQRIEDLELSELQEQDVD-----YFRNE  351 (379)
Q Consensus       291 ~L~l~~~~~~~~~---~~----~~~~~~~L~l-~~~~~~--~~~~~~~----~~~L~~L~l~~~~~~~l~-----~~~~~  351 (379)
                      .|+++.+......   .+    ..++...|++ .+....  +..+...    .++|++|++++|.   ++     .++..
T Consensus       317 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~---i~~~~~~~l~~~  393 (461)
T 1z7x_W          317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD---VSDSSCSSLAAT  393 (461)
T ss_dssp             EEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC---CCHHHHHHHHHH
T ss_pred             eeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC---CChhhHHHHHHH
Confidence            7777544432111   11    1244447777 333321  2223321    2478888888886   44     44544


Q ss_pred             cccccCCCCcEEEecCCCCc
Q 016966          352 LVKVGSSHLKRLRLEGSDLA  371 (379)
Q Consensus       352 ~~~~~~~~L~~L~l~~c~~l  371 (379)
                      +..  +++|++|++++|+..
T Consensus       394 l~~--~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          394 LLA--NHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHH--CCCCCEEECCSSSCC
T ss_pred             HHh--CCCccEEECCCCCCC
Confidence            433  788888888888754

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.70  E-value=1.6e-16  Score=141.77  Aligned_cols=185  Identities=21%  Similarity=0.188  Sum_probs=151.8

Q ss_pred             ccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCCcE
Q 016966           89 FTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRT  165 (379)
Q Consensus        89 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~  165 (379)
                      +.++.+....+..+.....+++|+.|.+.+|.+.+        ++.  +..+++|++|++++|.   ++. +..+++|++
T Consensus        26 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~--------~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~   94 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKS--------VQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGW   94 (291)
T ss_dssp             HHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCC--------CTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred             HHHHHhcCCCcccccchhhcCcccEEEccCCCccc--------Chh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCE
Confidence            33334444444444445578899999999976543        343  6789999999999998   554 899999999


Q ss_pred             EEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcC
Q 016966          166 LSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVD  245 (379)
Q Consensus       166 L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  245 (379)
                      |++++|.+..++.+..+++|++|++++|.++.++ .+..+++|++|++++|.... ++ . ++.+++|+.|++++|.+.+
T Consensus        95 L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~-~~-~-l~~l~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A           95 LFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD-IT-V-LSRLTKLDTLSLEDNQISD  170 (291)
T ss_dssp             EECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCC-CG-G-GGGCTTCSEEECCSSCCCC
T ss_pred             EECCCCcCCCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCc-ch-h-hccCCCCCEEEccCCcccc
Confidence            9999999999777999999999999999999885 68899999999999977544 43 3 7899999999999999987


Q ss_pred             hhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeeccc
Q 016966          246 WEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYF  300 (379)
Q Consensus       246 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~  300 (379)
                      ..           . +..+++|+.|++++|.++.++....+++|+.|+++.+...
T Consensus       171 ~~-----------~-l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          171 IV-----------P-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CG-----------G-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEE
T ss_pred             ch-----------h-hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCccc
Confidence            42           2 8899999999999999998876447899999999777654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.70  E-value=9e-16  Score=150.20  Aligned_cols=210  Identities=19%  Similarity=0.150  Sum_probs=164.5

Q ss_pred             ccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCC
Q 016966           85 TIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLS  161 (379)
Q Consensus        85 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~  161 (379)
                      .+++++.|++++|.+..+|.  .+++|+.|++++|.+..        +|.    .+++|+.|++++|.   +|..   ++
T Consensus        79 ~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~--------l~~----~l~~L~~L~L~~N~l~~lp~~---l~  141 (622)
T 3g06_A           79 LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTH--------LPA----LPSGLCKLWIFGNQLTSLPVL---PP  141 (622)
T ss_dssp             CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCC--------CCC----CCTTCCEEECCSSCCSCCCCC---CT
T ss_pred             cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCC--------CCC----CCCCcCEEECCCCCCCcCCCC---CC
Confidence            57899999999999988887  78999999999976543        443    46889999999998   6643   58


Q ss_pred             CCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecC
Q 016966          162 NLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGR  240 (379)
Q Consensus       162 ~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  240 (379)
                      +|++|++++|.++. |.   .+.+|+.|++++|.++.+|   ..+++|++|++++|.. ..+|.    .+++|+.|++.+
T Consensus       142 ~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l-~~l~~----~~~~L~~L~L~~  210 (622)
T 3g06_A          142 GLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQL-ASLPT----LPSELYKLWAYN  210 (622)
T ss_dssp             TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCC-SCCCC----CCTTCCEEECCS
T ss_pred             CCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCC-CCCCC----ccchhhEEECcC
Confidence            99999999999888 43   3468999999999999988   5678999999999764 44553    347899999999


Q ss_pred             CCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeecccccCcc-cccceEEEEe--CC
Q 016966          241 ESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTG-IWCRQFRVEL--NN  317 (379)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~l--~~  317 (379)
                      |.+...+           .   .+++|+.|++++|.++.+|.  .+++|+.|+++.+...  .++ ..++...|++  +.
T Consensus       211 N~l~~l~-----------~---~~~~L~~L~Ls~N~L~~lp~--~l~~L~~L~Ls~N~L~--~lp~~~~~L~~L~Ls~N~  272 (622)
T 3g06_A          211 NRLTSLP-----------A---LPSGLKELIVSGNRLTSLPV--LPSELKELMVSGNRLT--SLPMLPSGLLSLSVYRNQ  272 (622)
T ss_dssp             SCCSSCC-----------C---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCS--CCCCCCTTCCEEECCSSC
T ss_pred             CcccccC-----------C---CCCCCCEEEccCCccCcCCC--CCCcCcEEECCCCCCC--cCCcccccCcEEeCCCCC
Confidence            8887632           1   24789999999999888883  4688999998665443  222 3344558888  44


Q ss_pred             cccchHHHHHHhcccceeeccccc
Q 016966          318 KICLKDSLIVQLQRIEDLELSELQ  341 (379)
Q Consensus       318 ~~~~~~~~~~~~~~L~~L~l~~~~  341 (379)
                      ...+|..+..+ ++|+.|++++|+
T Consensus       273 L~~lp~~l~~l-~~L~~L~L~~N~  295 (622)
T 3g06_A          273 LTRLPESLIHL-SSETTVNLEGNP  295 (622)
T ss_dssp             CCSCCGGGGGS-CTTCEEECCSCC
T ss_pred             CCcCCHHHhhc-cccCEEEecCCC
Confidence            44578777775 999999999998

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.68  E-value=2.8e-17  Score=149.79  Aligned_cols=244  Identities=18%  Similarity=0.177  Sum_probs=173.1

Q ss_pred             CCccEEEEeCCCCCCCCC-CCCC--CCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-----CCcccc
Q 016966           87 KHFTSIVLHGIKPNLLPE-VLEC--PQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-----LPSSLG  158 (379)
Q Consensus        87 ~~l~~L~l~~~~~~~~~~-~~~~--~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-----lp~~i~  158 (379)
                      ...++++++++.+.  +. +..+  ++++.|.+.+|.+...        ++.+ ..+++|++|++++|.     +|..+.
T Consensus        47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~--------~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~  115 (336)
T 2ast_B           47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQP--------LAEH-FSPFRVQHMDLSNSVIEVSTLHGILS  115 (336)
T ss_dssp             TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSC--------CCSC-CCCBCCCEEECTTCEECHHHHHHHHT
T ss_pred             hhheeeccccccCC--HHHHHhhhhccceEEEcCCcccccc--------chhh-ccCCCCCEEEccCCCcCHHHHHHHHh
Confidence            35788899887653  22 2244  7899999999765432        2223 468999999999997     556678


Q ss_pred             CCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCC-cCc--ccchhhcCCCCCCEEeccCC-CCCcc-cChhhhCCCC
Q 016966          159 LLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGS-DIV--KLPVEVGELTWLKLLDLRDC-CFLKV-IPPNILSKLS  231 (379)
Q Consensus       159 ~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~-~l~--~lp~~~~~l~~L~~L~l~~~-~~~~~-~~~~~l~~l~  231 (379)
                      .+++|++|++++|.+..  +..++.+++|++|++++| .++  .++..+..+++|++|++++| ..... ++.. +..++
T Consensus       116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~  194 (336)
T 2ast_B          116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVS  194 (336)
T ss_dssp             TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSC
T ss_pred             hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcc
Confidence            89999999999999886  788889999999999999 677  47777889999999999998 54443 4443 68899


Q ss_pred             -CCcEEEecCCC--CcChhhhhhcccccchHhhcCCCCCcEEEeeccC-CC-CCCccc-cccCCcEEEEEeecccccCcc
Q 016966          232 -HLEELYIGRES--FVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRD-VS-SLPRGL-LLEKLERYSIYIRRYFSRKTG  305 (379)
Q Consensus       232 -~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~  305 (379)
                       +|++|++++|.  +.+..         ++..+..+++|+.|++++|. ++ ..+..+ .+++|+.|+++.+...   .+
T Consensus       195 ~~L~~L~l~~~~~~~~~~~---------l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~---~~  262 (336)
T 2ast_B          195 ETITQLNLSGYRKNLQKSD---------LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI---IP  262 (336)
T ss_dssp             TTCCEEECCSCGGGSCHHH---------HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC---CG
T ss_pred             cCCCEEEeCCCcccCCHHH---------HHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC---CH
Confidence             99999999984  44222         45677789999999999888 55 444444 6789999988443211   00


Q ss_pred             cccceEEEEeCCcccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccCCCC
Q 016966          306 IWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNPAE  376 (379)
Q Consensus       306 ~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  376 (379)
                                    .....+.. +++|+.|++.+|-  .-..+.. + .   ..|+.|++++|......|.
T Consensus       263 --------------~~~~~l~~-~~~L~~L~l~~~i--~~~~~~~-l-~---~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          263 --------------ETLLELGE-IPTLKTLQVFGIV--PDGTLQL-L-K---EALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             --------------GGGGGGGG-CTTCCEEECTTSS--CTTCHHH-H-H---HHSTTSEESCCCSCCTTCS
T ss_pred             --------------HHHHHHhc-CCCCCEEeccCcc--CHHHHHH-H-H---hhCcceEEecccCccccCC
Confidence                          00112334 5999999999884  2111111 1 1   2355566888888776664

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.67  E-value=6.5e-17  Score=147.38  Aligned_cols=191  Identities=15%  Similarity=0.192  Sum_probs=149.7

Q ss_pred             CCccEEEEeCCCCCC-CCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCC
Q 016966           87 KHFTSIVLHGIKPNL-LPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLS  161 (379)
Q Consensus        87 ~~l~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~  161 (379)
                      ++++.+++.++.+.. .+....+++|+.|++++|.+       .....+..+..+++|++|++++|.    .+..++.++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l-------~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~  142 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVI-------EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS  142 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEE-------CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCT
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCc-------CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCC
Confidence            689999999998844 44455899999999999654       222133457889999999999998    566788999


Q ss_pred             CCcEEEeecC-CCCC---cccccCcCCCcEEEeeCC-cCcc--cchhhcCCC-CCCEEeccCCC--CC-cccChhhhCCC
Q 016966          162 NLRTLSLCSC-GLPD---ISFVGYLKKLEILCLRGS-DIVK--LPVEVGELT-WLKLLDLRDCC--FL-KVIPPNILSKL  230 (379)
Q Consensus       162 ~L~~L~l~~~-~l~~---~~~~~~l~~L~~L~l~~~-~l~~--lp~~~~~l~-~L~~L~l~~~~--~~-~~~~~~~l~~l  230 (379)
                      +|++|++++| .++.   +..+..+++|++|++++| .++.  ++..+..++ +|++|++++|.  .. ..++.. ++.+
T Consensus       143 ~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~  221 (336)
T 2ast_B          143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRC  221 (336)
T ss_dssp             TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHC
T ss_pred             CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhC
Confidence            9999999999 6775   456888999999999999 8884  677888999 99999999984  33 344544 6889


Q ss_pred             CCCcEEEecCCC-CcChhhhhhcccccchHhhcCCCCCcEEEeeccC-CCCCC-ccc-cccCCcEEEEE
Q 016966          231 SHLEELYIGRES-FVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRD-VSSLP-RGL-LLEKLERYSIY  295 (379)
Q Consensus       231 ~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~-~~~-~~~~L~~L~l~  295 (379)
                      ++|++|++++|. +.+.          .+..+..+++|+.|++++|. +.... ..+ .+++|+.|++.
T Consensus       222 ~~L~~L~l~~~~~l~~~----------~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  280 (336)
T 2ast_B          222 PNLVHLDLSDSVMLKND----------CFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF  280 (336)
T ss_dssp             TTCSEEECTTCTTCCGG----------GGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred             CCCCEEeCCCCCcCCHH----------HHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence            999999999998 4433          36678889999999999885 22111 122 57889998883

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=6.1e-16  Score=129.84  Aligned_cols=147  Identities=16%  Similarity=0.149  Sum_probs=84.4

Q ss_pred             CccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccC
Q 016966           84 STIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGL  159 (379)
Q Consensus        84 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~  159 (379)
                      ..++++++|+++++.+..++.+..+++|++|++++|.+..        ++  .+..+++|++|++++|.    .|..++.
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~--------~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~  110 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN--------YN--PISGLSNLERLRIMGKDVTSDKIPNLSG  110 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSC--------CG--GGTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCc--------ch--hhhcCCCCCEEEeECCccCcccChhhcC
Confidence            4456777777777777666655567777777777753322        21  24556666666666665    3455556


Q ss_pred             CCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCc-CcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEE
Q 016966          160 LSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSD-IVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEEL  236 (379)
Q Consensus       160 l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~-l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L  236 (379)
                      +++|++|++++|.+..  +..++.+++|++|++++|. ++.+| .+..+++|++|++++|... .++ . +..+++|++|
T Consensus       111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~-~~~-~-l~~l~~L~~L  186 (197)
T 4ezg_A          111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYR-G-IEDFPKLNQL  186 (197)
T ss_dssp             CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC-CCT-T-GGGCSSCCEE
T ss_pred             CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc-ChH-H-hccCCCCCEE
Confidence            6666666666666554  4555566666666666664 55555 4555666666666554432 233 1 4555556666


Q ss_pred             EecCCCCc
Q 016966          237 YIGRESFV  244 (379)
Q Consensus       237 ~l~~~~~~  244 (379)
                      ++++|.+.
T Consensus       187 ~l~~N~i~  194 (197)
T 4ezg_A          187 YAFSQTIG  194 (197)
T ss_dssp             EECBC---
T ss_pred             EeeCcccC
Confidence            66555543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.67  E-value=7e-18  Score=160.55  Aligned_cols=269  Identities=15%  Similarity=0.103  Sum_probs=155.1

Q ss_pred             ccCCccEEEEeCCCCC-----CCCC-CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCC----ceeEEEecCCC--
Q 016966           85 TIKHFTSIVLHGIKPN-----LLPE-VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMI----EVRVVNLTDMI--  152 (379)
Q Consensus        85 ~~~~l~~L~l~~~~~~-----~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~----~L~~L~l~~~~--  152 (379)
                      .++++++|++++|.+.     .++. +..+++|++|++++|.+.       ...+..++..++    +|++|++++|.  
T Consensus        26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~-------~~~~~~l~~~l~~~~~~L~~L~L~~n~i~   98 (461)
T 1z7x_W           26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG-------DVGVHCVLQGLQTPSCKIQKLSLQNCCLT   98 (461)
T ss_dssp             HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH-------HHHHHHHHHTTCSTTCCCCEEECTTSCCB
T ss_pred             hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC-------hHHHHHHHHHHhhCCCceeEEEccCCCCC
Confidence            3556777777777763     2222 225677777777775542       222333444455    57777777776  


Q ss_pred             ------CCccccCCCCCcEEEeecCCCCC--ccccc-----CcCCCcEEEeeCCcCcc-----cchhhcCCCCCCEEecc
Q 016966          153 ------LPSSLGLLSNLRTLSLCSCGLPD--ISFVG-----YLKKLEILCLRGSDIVK-----LPVEVGELTWLKLLDLR  214 (379)
Q Consensus       153 ------lp~~i~~l~~L~~L~l~~~~l~~--~~~~~-----~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~  214 (379)
                            ++..+..+++|++|++++|.+..  +..+.     ..++|++|++++|.++.     ++..+..+++|++|+++
T Consensus        99 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~  178 (461)
T 1z7x_W           99 GAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS  178 (461)
T ss_dssp             GGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECC
T ss_pred             HHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECc
Confidence                  25556777777777777777654  33222     24567777777776663     34556667777777777


Q ss_pred             CCCCCcccChhh----hCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCC-----ccc-
Q 016966          215 DCCFLKVIPPNI----LSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLP-----RGL-  284 (379)
Q Consensus       215 ~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----~~~-  284 (379)
                      +|......+...    ....++|++|++++|.+....      ...++..+..+++|++|++++|.+....     ..+ 
T Consensus       179 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~------~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~  252 (461)
T 1z7x_W          179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN------CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL  252 (461)
T ss_dssp             SSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH------HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred             CCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH------HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHh
Confidence            766433322221    113557777777777766432      1123555666777888888777665321     111 


Q ss_pred             -cccCCcEEEEEeecccccC---cc----cccceEEEEe-CCccc--chHHHHHHh----cccceeecccccccccccc-
Q 016966          285 -LLEKLERYSIYIRRYFSRK---TG----IWCRQFRVEL-NNKIC--LKDSLIVQL----QRIEDLELSELQEQDVDYF-  348 (379)
Q Consensus       285 -~~~~L~~L~l~~~~~~~~~---~~----~~~~~~~L~l-~~~~~--~~~~~~~~~----~~L~~L~l~~~~~~~l~~~-  348 (379)
                       .+++|+.|+++.+......   .+    ..++...|++ .+...  .+..+...+    ++|++|++++|.   ++.. 
T Consensus       253 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~---l~~~~  329 (461)
T 1z7x_W          253 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS---FTAAC  329 (461)
T ss_dssp             STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC---CBGGG
T ss_pred             cCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC---CchHH
Confidence             2567777777544322110   11    1234446777 33322  112232221    588888888887   4433 


Q ss_pred             ----ccccccccCCCCcEEEecCCCCc
Q 016966          349 ----RNELVKVGSSHLKRLRLEGSDLA  371 (379)
Q Consensus       349 ----~~~~~~~~~~~L~~L~l~~c~~l  371 (379)
                          +..+  ..+++|++|++++|...
T Consensus       330 ~~~l~~~l--~~~~~L~~L~Ls~n~i~  354 (461)
T 1z7x_W          330 CSHFSSVL--AQNRFLLELQISNNRLE  354 (461)
T ss_dssp             HHHHHHHH--HHCSSCCEEECCSSBCH
T ss_pred             HHHHHHHH--hhCCCccEEEccCCccc
Confidence                2222  23789999999988654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.66  E-value=2.6e-15  Score=131.02  Aligned_cols=153  Identities=18%  Similarity=0.206  Sum_probs=129.9

Q ss_pred             ccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCcccc
Q 016966           85 TIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLG  158 (379)
Q Consensus        85 ~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~  158 (379)
                      ..+.++.|++++|.+..++.  +..+++|+.|++++|.+.        .+++..|..+++|++|++++|.    .+..+.
T Consensus        33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  104 (251)
T 3m19_A           33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ--------TLSAGVFDDLTELGTLGLANNQLASLPLGVFD  104 (251)
T ss_dssp             CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC--------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC--------ccCHhHhccCCcCCEEECCCCcccccChhHhc
Confidence            45789999999999976664  458999999999997653        4566667899999999999998    445678


Q ss_pred             CCCCCcEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcE
Q 016966          159 LLSNLRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEE  235 (379)
Q Consensus       159 ~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  235 (379)
                      .+++|++|++++|.++. + ..+..+++|++|++++|.++.+|. .+..+++|++|++++|... .++...+..+++|+.
T Consensus       105 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~  183 (251)
T 3m19_A          105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQT  183 (251)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCE
T ss_pred             ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC-ccCHHHHhCCCCCCE
Confidence            99999999999999998 4 457899999999999999999887 5889999999999997755 555444899999999


Q ss_pred             EEecCCCCcCh
Q 016966          236 LYIGRESFVDW  246 (379)
Q Consensus       236 L~l~~~~~~~~  246 (379)
                      |++.+|.+...
T Consensus       184 L~l~~N~~~c~  194 (251)
T 3m19_A          184 ITLFGNQFDCS  194 (251)
T ss_dssp             EECCSCCBCTT
T ss_pred             EEeeCCceeCC
Confidence            99999998653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.66  E-value=1.8e-16  Score=154.88  Aligned_cols=187  Identities=20%  Similarity=0.186  Sum_probs=153.5

Q ss_pred             CCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCC
Q 016966           87 KHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNL  163 (379)
Q Consensus        87 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L  163 (379)
                      ..+..+.+..+.+..+.....+++|+.|.+.+|.+..        ++.  +..+++|+.|+|++|.   ++. +..+++|
T Consensus        21 ~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~--------l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L   89 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKS--------VQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNL   89 (605)
T ss_dssp             HHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCC--------CTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTC
T ss_pred             HHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCC--------ChH--HccCCCCCEEEeeCCCCCCChh-hccCCCC
Confidence            3444455555555555555578899999999976543        343  6789999999999998   554 8999999


Q ss_pred             cEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCC
Q 016966          164 RTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESF  243 (379)
Q Consensus       164 ~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  243 (379)
                      ++|++++|.+..++.+..+++|++|++++|.+..++ .+..+++|+.|++++|.... ++.  ++.+++|+.|++++|.+
T Consensus        90 ~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~-l~~--l~~l~~L~~L~Ls~N~l  165 (605)
T 1m9s_A           90 GWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD-ITV--LSRLTKLDTLSLEDNQI  165 (605)
T ss_dssp             CEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCC-CGG--GGSCTTCSEEECCSSCC
T ss_pred             CEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCC-chh--hcccCCCCEEECcCCcC
Confidence            999999999998778999999999999999999886 68999999999999987554 432  79999999999999999


Q ss_pred             cChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeeccc
Q 016966          244 VDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYF  300 (379)
Q Consensus       244 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~  300 (379)
                      .+..           + +..+++|+.|++++|.+..++....+++|+.|+++.+...
T Consensus       166 ~~~~-----------~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          166 SDIV-----------P-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             CCCG-----------G-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEE
T ss_pred             CCch-----------h-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCc
Confidence            8742           3 8899999999999999998875447899999999766554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=1.1e-15  Score=128.31  Aligned_cols=148  Identities=17%  Similarity=0.241  Sum_probs=103.0

Q ss_pred             CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--CCccccCCCCCcEEEeecCCCCC--cccccCc
Q 016966          107 ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYL  182 (379)
Q Consensus       107 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l  182 (379)
                      .+++|+.|.+++|.+.        .++.  +..+++|++|++++|.  .+..+..+++|++|++++|.+..  +..++.+
T Consensus        42 ~l~~L~~L~l~~n~i~--------~l~~--l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l  111 (197)
T 4ezg_A           42 QMNSLTYITLANINVT--------DLTG--IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGL  111 (197)
T ss_dssp             HHHTCCEEEEESSCCS--------CCTT--GGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTC
T ss_pred             hcCCccEEeccCCCcc--------ChHH--HhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCC
Confidence            5677888888876543        3342  4667778888887777  44467777788888888877775  6777777


Q ss_pred             CCCcEEEeeCCcCcc-cchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhh
Q 016966          183 KKLEILCLRGSDIVK-LPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEEL  261 (379)
Q Consensus       183 ~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l  261 (379)
                      ++|++|++++|.++. .|..+..+++|++|++++|..+..++.  +..+++|+.|++++|.+.+.            ..+
T Consensus       112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~------------~~l  177 (197)
T 4ezg_A          112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY------------RGI  177 (197)
T ss_dssp             TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCC------------TTG
T ss_pred             CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcCh------------HHh
Confidence            788888888877773 556677777888888877665556653  67777788887777777652            256


Q ss_pred             cCCCCCcEEEeeccCCC
Q 016966          262 KHLPNLTSLEVHVRDVS  278 (379)
Q Consensus       262 ~~l~~L~~L~l~~~~~~  278 (379)
                      ..+++|+.|++++|.+.
T Consensus       178 ~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          178 EDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             GGCSSCCEEEECBC---
T ss_pred             ccCCCCCEEEeeCcccC
Confidence            66777777777777654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.64  E-value=2.3e-16  Score=154.88  Aligned_cols=81  Identities=11%  Similarity=0.037  Sum_probs=42.2

Q ss_pred             ccCCccEEEEeCCCCCCCC-----CCC-CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCc
Q 016966           85 TIKHFTSIVLHGIKPNLLP-----EVL-ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPS  155 (379)
Q Consensus        85 ~~~~l~~L~l~~~~~~~~~-----~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~  155 (379)
                      .++++++|++++|.+....     ... .+++|++|++++|.+...    .......++.++++|++|++++|.   +|.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~----~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~  237 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI----SPKDLETIARNCRSLVSVKVGDFEILELVG  237 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSC----CHHHHHHHHHHCTTCCEEECSSCBGGGGHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCcc----CHHHHHHHHhhCCCCcEEeccCccHHHHHH
Confidence            3456677777766542211     111 566677777766544321    111122334556777777777665   444


Q ss_pred             cccCCCCCcEEEee
Q 016966          156 SLGLLSNLRTLSLC  169 (379)
Q Consensus       156 ~i~~l~~L~~L~l~  169 (379)
                      .+..+++|++|+++
T Consensus       238 ~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          238 FFKAAANLEEFCGG  251 (592)
T ss_dssp             HHHHCTTCCEEEEC
T ss_pred             HHhhhhHHHhhccc
Confidence            44555555555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.64  E-value=2.5e-15  Score=127.16  Aligned_cols=168  Identities=19%  Similarity=0.261  Sum_probs=118.1

Q ss_pred             cEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CC-ccccCCCCCcE
Q 016966           90 TSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LP-SSLGLLSNLRT  165 (379)
Q Consensus        90 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp-~~i~~l~~L~~  165 (379)
                      +.+...++.+..+|.. ..++|+.|++++|.+        ..+++..|..+++|++|++++|.   +| ..+..+++|++
T Consensus        10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l--------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   80 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTG-IPAQTTYLDLETNSL--------KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY   80 (208)
T ss_dssp             TEEECCSSCCSSCCSC-CCTTCSEEECCSSCC--------CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CEEEecCCCccCCCCC-CCCCCcEEEcCCCcc--------CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCE
Confidence            3555566666556532 245788888888654        34555667778888888888877   43 34577888888


Q ss_pred             EEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCC
Q 016966          166 LSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRES  242 (379)
Q Consensus       166 L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  242 (379)
                      |++++|.++. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|... .++...+..+++|+.|++++|.
T Consensus        81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A           81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCC
T ss_pred             EECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCC
Confidence            8888888877 4 4467888888888888888877754 677888888888886644 4554446788888888888776


Q ss_pred             CcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC-CCCccc
Q 016966          243 FVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS-SLPRGL  284 (379)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~  284 (379)
                      +..                 .+++|+.|++..|.++ .+|..+
T Consensus       160 ~~~-----------------~~~~l~~L~~~~n~~~g~ip~~~  185 (208)
T 2o6s_A          160 WDC-----------------TCPGIRYLSEWINKHSGVVRNSA  185 (208)
T ss_dssp             BCC-----------------CTTTTHHHHHHHHHCTTTBBCTT
T ss_pred             eec-----------------CCCCHHHHHHHHHhCCceeeccC
Confidence            543                 3456777777777666 566543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.61  E-value=1.7e-15  Score=146.55  Aligned_cols=134  Identities=23%  Similarity=0.321  Sum_probs=79.0

Q ss_pred             CccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC-cccccCcCCC
Q 016966          110 QLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD-ISFVGYLKKL  185 (379)
Q Consensus       110 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L  185 (379)
                      +++.|++++|.+        ..+|..++   ++|++|++++|.   +|   ..+++|++|++++|.++. |. +..  +|
T Consensus        60 ~L~~L~Ls~n~L--------~~lp~~l~---~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L  122 (571)
T 3cvr_A           60 QFSELQLNRLNL--------SSLPDNLP---PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SL  122 (571)
T ss_dssp             TCSEEECCSSCC--------SCCCSCCC---TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TC
T ss_pred             CccEEEeCCCCC--------CccCHhHc---CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CC
Confidence            666666666543        22444332   456666666666   44   345666666666666666 44 433  66


Q ss_pred             cEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCC
Q 016966          186 EILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLP  265 (379)
Q Consensus       186 ~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~  265 (379)
                      ++|++++|.++.+|.   .+++|++|++++|... .+|.    .+++|+.|++++|.+...+           . +.  +
T Consensus       123 ~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~lp-----------~-l~--~  180 (571)
T 3cvr_A          123 KHLDVDNNQLTMLPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTFLP-----------E-LP--E  180 (571)
T ss_dssp             CEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCCC-----------C-CC--T
T ss_pred             CEEECCCCcCCCCCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCCcc-----------h-hh--C
Confidence            666666666666665   5666666666665533 3443    3556666666666665532           2 33  5


Q ss_pred             CCcEEEeeccCCCCCCc
Q 016966          266 NLTSLEVHVRDVSSLPR  282 (379)
Q Consensus       266 ~L~~L~l~~~~~~~~~~  282 (379)
                      +|+.|++++|.++.+|.
T Consensus       181 ~L~~L~Ls~N~L~~lp~  197 (571)
T 3cvr_A          181 SLEALDVSTNLLESLPA  197 (571)
T ss_dssp             TCCEEECCSSCCSSCCC
T ss_pred             CCCEEECcCCCCCchhh
Confidence            66666666666666655

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.61  E-value=4.7e-16  Score=136.61  Aligned_cols=170  Identities=17%  Similarity=0.147  Sum_probs=110.6

Q ss_pred             ccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCC
Q 016966           85 TIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLS  161 (379)
Q Consensus        85 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~  161 (379)
                      .+.++..+.+..+.+..++.+..+++|+.|++++|.+.+        ++  .+..+++|++|++++|.   ++. +..++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~--------l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~   85 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS--------LA--GMQFFTNLKELHLSHNQISDLSP-LKDLT   85 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC--------CT--TGGGCTTCCEEECCSSCCCCCGG-GTTCS
T ss_pred             HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc--------ch--HHhhCCCCCEEECCCCccCCChh-hccCC
Confidence            344555566666666555555567777777777755432        33  24567777777777776   443 67777


Q ss_pred             CCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCC
Q 016966          162 NLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE  241 (379)
Q Consensus       162 ~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  241 (379)
                      +|++|++++|.++..+.+.. ++|++|++++|.++.++ .+..+++|++|++++|.. ..++.  ++.+++|+.|++++|
T Consensus        86 ~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i-~~~~~--l~~l~~L~~L~L~~N  160 (263)
T 1xeu_A           86 KLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKL-KSIVM--LGFLSKLEVLDLHGN  160 (263)
T ss_dssp             SCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCC-CBCGG--GGGCTTCCEEECTTS
T ss_pred             CCCEEECCCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcC-CCChH--HccCCCCCEEECCCC
Confidence            77777777777766323333 77777777777777765 477777777777777654 33442  567777777777777


Q ss_pred             CCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCc
Q 016966          242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPR  282 (379)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  282 (379)
                      .+.+.            ..+..+++|+.|++++|.+...|.
T Consensus       161 ~i~~~------------~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          161 EITNT------------GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             CCCBC------------TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             cCcch------------HHhccCCCCCEEeCCCCcccCCcc
Confidence            77651            456667777777777777665443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.61  E-value=1.2e-14  Score=124.81  Aligned_cols=149  Identities=21%  Similarity=0.284  Sum_probs=115.7

Q ss_pred             CCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CC-ccccCCCC
Q 016966           87 KHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LP-SSLGLLSN  162 (379)
Q Consensus        87 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp-~~i~~l~~  162 (379)
                      -..+.++.+++.+..+|... .++|+.|++++|.+.        .+++..|..+++|++|++++|.   +| ..+..+++
T Consensus        19 Cs~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~--------~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~   89 (229)
T 3e6j_A           19 CSGTTVDCRSKRHASVPAGI-PTNAQILYLHDNQIT--------KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ   89 (229)
T ss_dssp             EETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             EeCCEeEccCCCcCccCCCC-CCCCCEEEcCCCccC--------ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCC
Confidence            34567888888777777633 378999999997653        3444557888999999999988   44 34678889


Q ss_pred             CcEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecC
Q 016966          163 LRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGR  240 (379)
Q Consensus       163 L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  240 (379)
                      |++|++++|.++. + ..+..+++|++|++++|.++.+|..+..+++|++|++++|.. ..++...+..+++|+.|++.+
T Consensus        90 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A           90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECTT
T ss_pred             cCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcC-CccCHHHHhCCCCCCEEEeeC
Confidence            9999999998888 4 446788899999999998888888888889999999988654 455555578888888888888


Q ss_pred             CCCcC
Q 016966          241 ESFVD  245 (379)
Q Consensus       241 ~~~~~  245 (379)
                      |.+..
T Consensus       169 N~~~c  173 (229)
T 3e6j_A          169 NPWDC  173 (229)
T ss_dssp             SCBCT
T ss_pred             CCccC
Confidence            87764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.61  E-value=1.2e-16  Score=147.17  Aligned_cols=199  Identities=14%  Similarity=0.089  Sum_probs=120.1

Q ss_pred             cCCccEEEEeCCCCCCCCC------CCCCC-CccEEEeecCCCCCCCCCCCcccChhhhhC----C-CceeEEEecCCC-
Q 016966           86 IKHFTSIVLHGIKPNLLPE------VLECP-QLELLFIRGGGRDDPWETSPVTIPDNFFKS----M-IEVRVVNLTDMI-  152 (379)
Q Consensus        86 ~~~l~~L~l~~~~~~~~~~------~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~----l-~~L~~L~l~~~~-  152 (379)
                      .+++++|++++|.+...+.      +..++ +|++|++++|.+.+        .....|..    . ++|++|++++|. 
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~--------~~~~~l~~~l~~~~~~L~~L~Ls~n~l   92 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGF--------KNSDELVQILAAIPANVTSLNLSGNFL   92 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGG--------SCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCH--------HHHHHHHHHHhccCCCccEEECcCCcC
Confidence            4457888888887755442      23566 78888888865433        22222222    2 778888888877 


Q ss_pred             ---CCc----cccCC-CCCcEEEeecCCCCC--cccc----cC-cCCCcEEEeeCCcCc-----ccchhhcCCC-CCCEE
Q 016966          153 ---LPS----SLGLL-SNLRTLSLCSCGLPD--ISFV----GY-LKKLEILCLRGSDIV-----KLPVEVGELT-WLKLL  211 (379)
Q Consensus       153 ---lp~----~i~~l-~~L~~L~l~~~~l~~--~~~~----~~-l~~L~~L~l~~~~l~-----~lp~~~~~l~-~L~~L  211 (379)
                         .+.    .+..+ ++|++|++++|.+..  +..+    .. .++|++|++++|.++     .++..+..++ +|++|
T Consensus        93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L  172 (362)
T 3goz_A           93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL  172 (362)
T ss_dssp             GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred             ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence               222    24444 678888888887765  2332    23 257888888888776     4444555555 78888


Q ss_pred             eccCCCCCcccChh---hhCCC-CCCcEEEecCCCCcChhhhhhcccccchHhhcC-CCCCcEEEeeccCCCCCCccc--
Q 016966          212 DLRDCCFLKVIPPN---ILSKL-SHLEELYIGRESFVDWEEEVEGVKNASLEELKH-LPNLTSLEVHVRDVSSLPRGL--  284 (379)
Q Consensus       212 ~l~~~~~~~~~~~~---~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~--  284 (379)
                      ++++|......+..   .+... ++|++|++++|.+....      ...++..+.. .++|+.|++++|.+...+...  
T Consensus       173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  246 (362)
T 3goz_A          173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS------YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK  246 (362)
T ss_dssp             ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC------HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH
T ss_pred             eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH------HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH
Confidence            88887654443321   13444 47888888877776532      1223445544 347888888887777544311  


Q ss_pred             ----cccCCcEEEEEeec
Q 016966          285 ----LLEKLERYSIYIRR  298 (379)
Q Consensus       285 ----~~~~L~~L~l~~~~  298 (379)
                          .+++|+.|+++.+.
T Consensus       247 ~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          247 LLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             HTTTTTTTCSEEEEEHHH
T ss_pred             HHHhcCCCccEEEeccCC
Confidence                35677777775444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.61  E-value=1.1e-14  Score=124.40  Aligned_cols=147  Identities=21%  Similarity=0.204  Sum_probs=106.0

Q ss_pred             cEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcE
Q 016966           90 TSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRT  165 (379)
Q Consensus        90 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~  165 (379)
                      ++++++++.+..+|... .+.++.|++++|.+..       ..+..+|..+++|++|++++|.    .+..+..+++|++
T Consensus        14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~-------~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~   85 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTV-------LEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE   85 (220)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCE-------ECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCc-------cCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence            57888888887777532 3456788888866422       2244556778888888888887    4446778888888


Q ss_pred             EEeecCCCCC-c-ccccCcCCCcEEEeeCCcCccc-chhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCC
Q 016966          166 LSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKL-PVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRES  242 (379)
Q Consensus       166 L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  242 (379)
                      |++++|.++. + ..+..+++|++|++++|.++.+ |..+..+++|++|++++|......|.. +..+++|+.|++++|.
T Consensus        86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA-FDTLHSLSTLNLLANP  164 (220)
T ss_dssp             EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT-TTTCTTCCEEECCSCC
T ss_pred             EECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH-hcCCCCCCEEEecCcC
Confidence            8888888777 3 4577788888888888888766 456777888888888886655444544 6778888888888877


Q ss_pred             CcC
Q 016966          243 FVD  245 (379)
Q Consensus       243 ~~~  245 (379)
                      +..
T Consensus       165 l~c  167 (220)
T 2v70_A          165 FNC  167 (220)
T ss_dssp             EEC
T ss_pred             CcC
Confidence            654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.59  E-value=1.7e-14  Score=123.13  Aligned_cols=146  Identities=21%  Similarity=0.272  Sum_probs=106.3

Q ss_pred             cEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcE
Q 016966           90 TSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRT  165 (379)
Q Consensus        90 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~  165 (379)
                      +.++.+++.+..+|.... +.++.|++++|.+        ..+++..|..+++|++|++++|.    .|..+..+++|++
T Consensus        14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i--------~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~   84 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTI--------KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS   84 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC-TTCCEEECCSSCC--------CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCE
T ss_pred             CEEEcCCCCcCcCCCccC-cCCCEEECCCCcC--------CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCE
Confidence            467777777777775332 6788888888653        34555567788888888888887    5677888888888


Q ss_pred             EEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccc-hhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCC
Q 016966          166 LSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLP-VEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRES  242 (379)
Q Consensus       166 L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  242 (379)
                      |++++|.++. + ..+..+++|++|++++|.++.++ ..+..+++|++|++++|... .++...+..+++|+.|++.+|.
T Consensus        85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           85 LVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEeCCCC
Confidence            8888888877 4 34577888888888888888664 46777888888888886644 3444346778888888888877


Q ss_pred             CcC
Q 016966          243 FVD  245 (379)
Q Consensus       243 ~~~  245 (379)
                      +..
T Consensus       164 ~~c  166 (220)
T 2v9t_B          164 FIC  166 (220)
T ss_dssp             EEC
T ss_pred             cCC
Confidence            654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.59  E-value=2e-14  Score=139.09  Aligned_cols=173  Identities=18%  Similarity=0.237  Sum_probs=115.7

Q ss_pred             CccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCCc
Q 016966           88 HFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLR  164 (379)
Q Consensus        88 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~  164 (379)
                      +++.|++++|.+..+|... +++|+.|++++|.+.        .+|    ..+++|++|++++|.   +|. +..  +|+
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~--------~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~  123 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI--------SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLK  123 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS--------CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCC
T ss_pred             CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc--------ccc----cccCCCCEEEccCCCCCCcch-hhc--CCC
Confidence            6777888777776666533 367888888876543        344    235777888888777   555 443  778


Q ss_pred             EEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCC
Q 016966          165 TLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESF  243 (379)
Q Consensus       165 ~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  243 (379)
                      +|++++|.++. |.   .+++|++|++++|.++.+|.   .+++|++|++++|.... +|.  ++  ++|+.|++++|.+
T Consensus       124 ~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~--l~--~~L~~L~Ls~N~L  192 (571)
T 3cvr_A          124 HLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE--LP--ESLEALDVSTNLL  192 (571)
T ss_dssp             EEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC--CC--TTCCEEECCSSCC
T ss_pred             EEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch--hh--CCCCEEECcCCCC
Confidence            88888887777 44   56778888888887777775   56778888887766433 665  34  7788888887777


Q ss_pred             cChhhhhhcccccchHhhcC-----CCCCcEEEeeccCCCCCCccc-cccCCcEEEEEeecc
Q 016966          244 VDWEEEVEGVKNASLEELKH-----LPNLTSLEVHVRDVSSLPRGL-LLEKLERYSIYIRRY  299 (379)
Q Consensus       244 ~~~~~~~~~~~~~~~~~l~~-----l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~  299 (379)
                      ...+           . +..     .+.|+.|++++|.++.+|..+ .+++|+.|+++.+..
T Consensus       193 ~~lp-----------~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          193 ESLP-----------A-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             SSCC-----------C-CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred             Cchh-----------h-HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence            7533           2 222     122377888888777777765 577777777754443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.59  E-value=1.1e-15  Score=149.94  Aligned_cols=265  Identities=15%  Similarity=0.084  Sum_probs=136.6

Q ss_pred             ccCCccEEEEeCCCCCCCC-----CC-CCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC------
Q 016966           85 TIKHFTSIVLHGIKPNLLP-----EV-LECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI------  152 (379)
Q Consensus        85 ~~~~l~~L~l~~~~~~~~~-----~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~------  152 (379)
                      ..+++++|+++.+.+..+.     .. ..+++|++|.+.+|.+        ..++ ..+..+++|+.|+++...      
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~--------~~l~-~~~~~~~~L~~L~l~~~~~~~~~~  260 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI--------LELV-GFFKAAANLEEFCGGSLNEDIGMP  260 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG--------GGGH-HHHHHCTTCCEEEECBCCCCTTCT
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH--------HHHH-HHHhhhhHHHhhcccccccccchH
Confidence            4678899999888775332     22 2678899998888543        2233 345666777777765432      


Q ss_pred             -CCccccCCCCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCc--------------------------ccchhhcC
Q 016966          153 -LPSSLGLLSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIV--------------------------KLPVEVGE  204 (379)
Q Consensus       153 -lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~--------------------------~lp~~~~~  204 (379)
                       .+..+..+++|+.|+++.+.... +..+..+++|++|++++|.++                          .++.....
T Consensus       261 ~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~  340 (592)
T 3ogk_B          261 EKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQY  340 (592)
T ss_dssp             TSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHH
T ss_pred             HHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHh
Confidence             22233444445554444433222 333344444555555444433                          22222234


Q ss_pred             CCCCCEEeccC----------CCCCccc-ChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcC-CCCCcEEEe
Q 016966          205 LTWLKLLDLRD----------CCFLKVI-PPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKH-LPNLTSLEV  272 (379)
Q Consensus       205 l~~L~~L~l~~----------~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l  272 (379)
                      +++|++|++++          |+..... .......+++|+.|++..+.+.+.          .+..+.. +++|+.|++
T Consensus       341 ~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~----------~~~~l~~~~~~L~~L~l  410 (592)
T 3ogk_B          341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE----------SLESIGTYLKNLCDFRL  410 (592)
T ss_dssp             CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH----------HHHHHHHHCCSCCEEEE
T ss_pred             CCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH----------HHHHHHhhCCCCcEEEE
Confidence            44555555552          2222211 111123355555555544444332          2334433 677777777


Q ss_pred             e----ccCCCCCCcc------c-cccCCcEEEEEeeccc-----ccCc-ccccceEEEEe-CCccc---chHHHHHHhcc
Q 016966          273 H----VRDVSSLPRG------L-LLEKLERYSIYIRRYF-----SRKT-GIWCRQFRVEL-NNKIC---LKDSLIVQLQR  331 (379)
Q Consensus       273 ~----~~~~~~~~~~------~-~~~~L~~L~l~~~~~~-----~~~~-~~~~~~~~L~l-~~~~~---~~~~~~~~~~~  331 (379)
                      .    ++.++..|..      + .+++|+.|+++.+...     .... ...++...|.+ .+...   ++..+.. +++
T Consensus       411 ~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~  489 (592)
T 3ogk_B          411 VLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRG-CPN  489 (592)
T ss_dssp             EECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTC-CTT
T ss_pred             eecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhc-Ccc
Confidence            5    4455544322      1 4677888877542211     0001 11344557777 33322   2232333 488


Q ss_pred             cceeeccccccccccccccccccccCCCCcEEEecCCCCcc
Q 016966          332 IEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLAL  372 (379)
Q Consensus       332 L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~  372 (379)
                      |++|++++|.   ++...-......+++|++|++++|+...
T Consensus       490 L~~L~l~~n~---l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          490 LQKLEMRGCC---FSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             CCEEEEESCC---CBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             cCeeeccCCC---CcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            8999998887   3332111112348899999999998543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.58  E-value=3.6e-16  Score=144.01  Aligned_cols=234  Identities=13%  Similarity=0.071  Sum_probs=153.5

Q ss_pred             EEEeCCCCC-CCCCCCCC-CCccEEEeecCCCCCCCCCCCcccCh----hhhhCCC-ceeEEEecCCC----CCccccCC
Q 016966           92 IVLHGIKPN-LLPEVLEC-PQLELLFIRGGGRDDPWETSPVTIPD----NFFKSMI-EVRVVNLTDMI----LPSSLGLL  160 (379)
Q Consensus        92 L~l~~~~~~-~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~----lp~~i~~l  160 (379)
                      +.++.+.+. .+|.+... ++|+.|++++|.+.        ..+.    ..|..++ +|++|++++|.    .+..+..+
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~--------~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~   74 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY--------SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI   74 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG--------GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCC--------hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH
Confidence            345566653 34444444 45999999997653        3343    5567888 89999999998    34444443


Q ss_pred             -----CCCcEEEeecCCCCC--ccc----ccCc-CCCcEEEeeCCcCcccch-----hhcC-CCCCCEEeccCCCCCcc-
Q 016966          161 -----SNLRTLSLCSCGLPD--ISF----VGYL-KKLEILCLRGSDIVKLPV-----EVGE-LTWLKLLDLRDCCFLKV-  221 (379)
Q Consensus       161 -----~~L~~L~l~~~~l~~--~~~----~~~l-~~L~~L~l~~~~l~~lp~-----~~~~-l~~L~~L~l~~~~~~~~-  221 (379)
                           ++|++|++++|.+..  +..    +..+ ++|++|++++|.++..+.     .+.. .++|++|++++|..... 
T Consensus        75 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  154 (362)
T 3goz_A           75 LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS  154 (362)
T ss_dssp             HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC
T ss_pred             HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH
Confidence                 899999999999876  333    4444 799999999998886553     2344 36899999999876532 


Q ss_pred             ---cChhhhCCCC-CCcEEEecCCCCcChhhhhhcccccchHhhcCC-CCCcEEEeeccCCCC-----CCccc-c-ccCC
Q 016966          222 ---IPPNILSKLS-HLEELYIGRESFVDWEEEVEGVKNASLEELKHL-PNLTSLEVHVRDVSS-----LPRGL-L-LEKL  289 (379)
Q Consensus       222 ---~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~-----~~~~~-~-~~~L  289 (379)
                         ++.. +..++ +|++|++++|.+....      ...+...+..+ ++|+.|++++|.+..     ++..+ . .++|
T Consensus       155 ~~~l~~~-l~~~~~~L~~L~Ls~n~l~~~~------~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L  227 (362)
T 3goz_A          155 SDELIQI-LAAIPANVNSLNLRGNNLASKN------CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV  227 (362)
T ss_dssp             HHHHHHH-HHTSCTTCCEEECTTSCGGGSC------HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTC
T ss_pred             HHHHHHH-HhcCCccccEeeecCCCCchhh------HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCc
Confidence               2332 45565 8999999999887543      11233455666 489999999998886     34433 2 4589


Q ss_pred             cEEEEEeecccccC-------cccccceEEEEe-CCcc-c--------chHHHHHHhcccceeeccccc
Q 016966          290 ERYSIYIRRYFSRK-------TGIWCRQFRVEL-NNKI-C--------LKDSLIVQLQRIEDLELSELQ  341 (379)
Q Consensus       290 ~~L~l~~~~~~~~~-------~~~~~~~~~L~l-~~~~-~--------~~~~~~~~~~~L~~L~l~~~~  341 (379)
                      +.|+++.+......       ....++...|.+ .+.. .        ++..+.. +++|+.|++++|.
T Consensus       228 ~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~-l~~L~~LdL~~N~  295 (362)
T 3goz_A          228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN-IQKIILVDKNGKE  295 (362)
T ss_dssp             CEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTT-CCEEEEECTTSCB
T ss_pred             eEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhcc-CCceEEEecCCCc
Confidence            99999666543211       133345557888 2221 1        1112223 3678889999887

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.58  E-value=9.8e-15  Score=123.51  Aligned_cols=147  Identities=20%  Similarity=0.229  Sum_probs=123.3

Q ss_pred             CccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CC-ccc
Q 016966           84 STIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LP-SSL  157 (379)
Q Consensus        84 ~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp-~~i  157 (379)
                      ...+++++|++++|.+..++.  +..+++|+.|++++|.+        ..++...|..+++|++|++++|.   +| ..+
T Consensus        25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~   96 (208)
T 2o6s_A           25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL--------QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF   96 (208)
T ss_dssp             CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC--------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc--------CccChhhcCCCCCcCEEECCCCcCCccCHhHh
Confidence            346789999999999977776  44899999999999764        45677778899999999999998   44 347


Q ss_pred             cCCCCCcEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCCCCCcccChhhhCCCCCCc
Q 016966          158 GLLSNLRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCCFLKVIPPNILSKLSHLE  234 (379)
Q Consensus       158 ~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  234 (379)
                      ..+++|++|++++|.+.. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|..        .+.+++|+
T Consensus        97 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~l~  168 (208)
T 2o6s_A           97 DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPGIR  168 (208)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTTTH
T ss_pred             cCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCCHH
Confidence            899999999999999988 4 4578999999999999999988865 78899999999999753        35667888


Q ss_pred             EEEecCCCCcCh
Q 016966          235 ELYIGRESFVDW  246 (379)
Q Consensus       235 ~L~l~~~~~~~~  246 (379)
                      .|.++.|.+.+.
T Consensus       169 ~L~~~~n~~~g~  180 (208)
T 2o6s_A          169 YLSEWINKHSGV  180 (208)
T ss_dssp             HHHHHHHHCTTT
T ss_pred             HHHHHHHhCCce
Confidence            888887777654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.58  E-value=3.4e-14  Score=130.15  Aligned_cols=192  Identities=18%  Similarity=0.124  Sum_probs=149.9

Q ss_pred             CCccCCccEEEEeCCCC-CCCCC--CCCCCCccEE-EeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CC-
Q 016966           83 GSTIKHFTSIVLHGIKP-NLLPE--VLECPQLELL-FIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LP-  154 (379)
Q Consensus        83 ~~~~~~l~~L~l~~~~~-~~~~~--~~~~~~L~~L-~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp-  154 (379)
                      +..++++++|++++|.+ +.++.  +..+++++.+ .+..|.        ...+++..|..+++|++|++++|.   .| 
T Consensus        50 f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~--------l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~  121 (350)
T 4ay9_X           50 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN--------LLYINPEAFQNLPNLQYLLISNTGIKHLPD  121 (350)
T ss_dssp             STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT--------CCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred             HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc--------ccccCchhhhhccccccccccccccccCCc
Confidence            36688999999999987 54554  3478887764 455544        566777788999999999999998   33 


Q ss_pred             ccccCCCCCcEEEeecC-CCCC-c-ccccCc-CCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCC
Q 016966          155 SSLGLLSNLRTLSLCSC-GLPD-I-SFVGYL-KKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKL  230 (379)
Q Consensus       155 ~~i~~l~~L~~L~l~~~-~l~~-~-~~~~~l-~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l  230 (379)
                      ..+....++.+|++.++ .+.. + ..+..+ ..+++|++++|+++.+|..+....+|+++++.+++.++.+|...++.+
T Consensus       122 ~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l  201 (350)
T 4ay9_X          122 VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA  201 (350)
T ss_dssp             CTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTE
T ss_pred             hhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccC
Confidence            34456667888999765 4666 3 445555 479999999999999999888889999999998888999998878999


Q ss_pred             CCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEee-ccCCCCCCccccccCCcEEEEE
Q 016966          231 SHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVH-VRDVSSLPRGLLLEKLERYSIY  295 (379)
Q Consensus       231 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~L~~L~l~  295 (379)
                      ++|+.|++++|.+...+           .  ..+.+|+.|.+. .+.+..+|..-.+++|+.+++.
T Consensus       202 ~~L~~LdLs~N~l~~lp-----------~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~  254 (350)
T 4ay9_X          202 SGPVILDISRTRIHSLP-----------S--YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLT  254 (350)
T ss_dssp             ECCSEEECTTSCCCCCC-----------S--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred             cccchhhcCCCCcCccC-----------h--hhhccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence            99999999999998743           2  235677777765 4456688865578899998874

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.58  E-value=1.5e-14  Score=133.03  Aligned_cols=169  Identities=20%  Similarity=0.228  Sum_probs=98.3

Q ss_pred             cEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhh-CCCceeEEEecCCC----CCccccCCCCCc
Q 016966           90 TSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFK-SMIEVRVVNLTDMI----LPSSLGLLSNLR  164 (379)
Q Consensus        90 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~----lp~~i~~l~~L~  164 (379)
                      +.++.+++.+..+|... .+.++.|++++|.+        ..++...|. .+++|++|++++|.    .+..+..+++|+
T Consensus        21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l--------~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~   91 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNL--------SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR   91 (361)
T ss_dssp             TEEECCSSCCSSCCSSC-CTTCSEEECCSSCC--------CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CEEEeCCCCcCccCccC-CCCCCEEECCCCCC--------CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence            45666666665565422 23466677776543        334444455 66677777777666    334566667777


Q ss_pred             EEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCccc-chhhcCCCCCCEEeccCCCCCcccChhhh---CCCCCCcEEEe
Q 016966          165 TLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKL-PVEVGELTWLKLLDLRDCCFLKVIPPNIL---SKLSHLEELYI  238 (379)
Q Consensus       165 ~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l---~~l~~L~~L~l  238 (379)
                      +|++++|.++. + ..+..+++|++|++++|.+..+ |..+..+++|++|++++|. +..+|...+   ..+++|+.|++
T Consensus        92 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L  170 (361)
T 2xot_A           92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDL  170 (361)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEEC
T ss_pred             EEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEEC
Confidence            77777776666 3 3466667777777777766655 3456666777777776654 334554433   45666777777


Q ss_pred             cCCCCcChhhhhhcccccchHhhcCCCC--CcEEEeeccCCC
Q 016966          239 GRESFVDWEEEVEGVKNASLEELKHLPN--LTSLEVHVRDVS  278 (379)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~  278 (379)
                      ++|.+...+          ...+..++.  ++.|++.+|.+.
T Consensus       171 ~~N~l~~l~----------~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          171 SSNKLKKLP----------LTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CSSCCCCCC----------HHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCCCCCccC----------HHHhhhccHhhcceEEecCCCcc
Confidence            766666543          334444444  355666655443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.57  E-value=1.1e-14  Score=127.93  Aligned_cols=148  Identities=18%  Similarity=0.199  Sum_probs=127.6

Q ss_pred             CCccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccC
Q 016966           83 GSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGL  159 (379)
Q Consensus        83 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~  159 (379)
                      ...++++++|++++|.+..++.+..+++|+.|++++|.+.+        +++  |..+++|++|++++|.   +|. +..
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~--------~~~--l~~l~~L~~L~L~~N~l~~l~~-~~~  105 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISD--------LSP--LKDLTKLEELSVNRNRLKNLNG-IPS  105 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--------CGG--GTTCSSCCEEECCSSCCSCCTT-CCC
T ss_pred             hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCC--------Chh--hccCCCCCEEECCCCccCCcCc-ccc
Confidence            45678999999999999889877799999999999977544        444  7899999999999998   553 334


Q ss_pred             CCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEec
Q 016966          160 LSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIG  239 (379)
Q Consensus       160 l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  239 (379)
                       .+|++|++++|.++.++.+..+++|++|++++|.++.++ .+..+++|++|++++|..... + . +..+++|+.|+++
T Consensus       106 -~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~-~-l~~l~~L~~L~l~  180 (263)
T 1xeu_A          106 -ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-G-G-LTRLKKVNWIDLT  180 (263)
T ss_dssp             -SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-T-T-STTCCCCCEEEEE
T ss_pred             -CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-H-H-hccCCCCCEEeCC
Confidence             899999999999998767999999999999999999987 789999999999999876554 3 2 7899999999999


Q ss_pred             CCCCcCh
Q 016966          240 RESFVDW  246 (379)
Q Consensus       240 ~~~~~~~  246 (379)
                      +|.+...
T Consensus       181 ~N~~~~~  187 (263)
T 1xeu_A          181 GQKCVNE  187 (263)
T ss_dssp             EEEEECC
T ss_pred             CCcccCC
Confidence            9987653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.56  E-value=3.9e-14  Score=120.87  Aligned_cols=136  Identities=18%  Similarity=0.213  Sum_probs=90.5

Q ss_pred             CcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccchh-
Q 016966          129 PVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPVE-  201 (379)
Q Consensus       129 ~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-  201 (379)
                      ...+|..+.   ++|+.|++++|.    .+..+..+++|++|++++|.+..  +..+..+++|++|++++|.++.+|.. 
T Consensus        23 l~~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~   99 (220)
T 2v9t_B           23 LTEIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL   99 (220)
T ss_dssp             CSSCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTT
T ss_pred             cCcCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhH
Confidence            334554332   567777777776    33456777777777777777766  46677777777777777777777754 


Q ss_pred             hcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC
Q 016966          202 VGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS  278 (379)
Q Consensus       202 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  278 (379)
                      +..+++|++|++++|......+.. +..+++|+.|++++|.+....          +..+..+++|+.|++++|.+.
T Consensus       100 f~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          100 FEGLFSLQLLLLNANKINCLRVDA-FQDLHNLNLLSLYDNKLQTIA----------KGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCSCCC----------TTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCCCCCCEEECCCCCCCEeCHHH-cCCCCCCCEEECCCCcCCEEC----------HHHHhCCCCCCEEEeCCCCcC
Confidence            466777777777776544433333 677777777777777776543          344666777777777776654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.54  E-value=6.8e-14  Score=119.40  Aligned_cols=145  Identities=15%  Similarity=0.109  Sum_probs=103.8

Q ss_pred             cEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---C-C-ccccCCCCCcEEEeecCCCCC-c-ccccCcCC
Q 016966          112 ELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---L-P-SSLGLLSNLRTLSLCSCGLPD-I-SFVGYLKK  184 (379)
Q Consensus       112 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---l-p-~~i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~  184 (379)
                      +++++++|.+        ..+|..+   ...+++|++++|.   + + ..+..+++|++|++++|.++. + ..+..+++
T Consensus        14 ~~l~~s~n~l--------~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~   82 (220)
T 2v70_A           14 TTVDCSNQKL--------NKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG   82 (220)
T ss_dssp             TEEECCSSCC--------SSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             CEeEeCCCCc--------ccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCC
Confidence            4677777543        3455443   2356788888887   3 2 236778888888888888877 3 46788888


Q ss_pred             CcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcC
Q 016966          185 LEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKH  263 (379)
Q Consensus       185 L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~  263 (379)
                      |++|++++|.++.++. .+..+++|++|++++|......|.. +..+++|+.|++++|.+....          +..+..
T Consensus        83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~----------~~~~~~  151 (220)
T 2v70_A           83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDS-FIGLSSVRLLSLYDNQITTVA----------PGAFDT  151 (220)
T ss_dssp             CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTS-STTCTTCSEEECTTSCCCCBC----------TTTTTT
T ss_pred             CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhH-cCCCccCCEEECCCCcCCEEC----------HHHhcC
Confidence            8888888888887765 3777888888888887655544544 678888888888888777642          566777


Q ss_pred             CCCCcEEEeeccCCC
Q 016966          264 LPNLTSLEVHVRDVS  278 (379)
Q Consensus       264 l~~L~~L~l~~~~~~  278 (379)
                      +++|+.|++++|.+.
T Consensus       152 l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          152 LHSLSTLNLLANPFN  166 (220)
T ss_dssp             CTTCCEEECCSCCEE
T ss_pred             CCCCCEEEecCcCCc
Confidence            788888888877765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.54  E-value=4.3e-14  Score=115.27  Aligned_cols=134  Identities=27%  Similarity=0.246  Sum_probs=68.8

Q ss_pred             CceeEEEecCCC-----CCccccCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcc-cchhhcCCCCCCEEecc
Q 016966          141 IEVRVVNLTDMI-----LPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVK-LPVEVGELTWLKLLDLR  214 (379)
Q Consensus       141 ~~L~~L~l~~~~-----lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~  214 (379)
                      ++|++|++++|.     +|..+..+++|++|++++|.+.....+..+++|++|++++|.+.. +|..+..+++|++|+++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  103 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS  103 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence            344444444443     333344455555555555555444445555566666666665554 44444455666666666


Q ss_pred             CCCCCcccCh-hhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCc
Q 016966          215 DCCFLKVIPP-NILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPR  282 (379)
Q Consensus       215 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  282 (379)
                      +|... .++. ..++.+++|++|++++|.+....       ......+..+++|+.|+++.|....+|.
T Consensus       104 ~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~-------~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          104 GNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLN-------DYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             SSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTST-------THHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             CCccC-cchhHHHHhcCCCCCEEEeeCCcCcchH-------HHHHHHHHhCccCcEecCCCCChhhccc
Confidence            65432 2221 22556666666666666555432       0001245566666666666666555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.53  E-value=4.1e-15  Score=145.94  Aligned_cols=39  Identities=8%  Similarity=0.064  Sum_probs=22.7

Q ss_pred             hcccceeeccccccccccccccccccccCCCCcEEEecCCCC
Q 016966          329 LQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDL  370 (379)
Q Consensus       329 ~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~  370 (379)
                      +++|+.|++++|.   +...........+++|++|++++|+.
T Consensus       480 ~~~L~~L~L~~n~---~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          480 CDSLRKLEIRDCP---FGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CTTCCEEEEESCS---CCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             CCCcCEEECcCCC---CcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            4777777777776   33322211123467777777777765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.53  E-value=8.8e-14  Score=119.46  Aligned_cols=126  Identities=22%  Similarity=0.264  Sum_probs=82.3

Q ss_pred             CceeEEEecCCC----CCccccCCCCCcEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEec
Q 016966          141 IEVRVVNLTDMI----LPSSLGLLSNLRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDL  213 (379)
Q Consensus       141 ~~L~~L~l~~~~----lp~~i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l  213 (379)
                      ++|++|++++|.    .|..+..+++|++|++++|.+.. + ..+..+++|++|++++|.++.+|.. +..+++|++|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            567777777776    35556677777777777777666 3 3456677777777777777766643 456777777777


Q ss_pred             cCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC
Q 016966          214 RDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS  278 (379)
Q Consensus       214 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  278 (379)
                      ++|.. ..+|.. +..+++|++|++++|.+....          ...+..+++|+.|++.+|.+.
T Consensus       120 s~N~l-~~lp~~-~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          120 CCNKL-TELPRG-IERLTHLTHLALDQNQLKSIP----------HGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CSSCC-CSCCTT-GGGCTTCSEEECCSSCCCCCC----------TTTTTTCTTCCEEECTTSCBC
T ss_pred             cCCcc-cccCcc-cccCCCCCEEECCCCcCCccC----------HHHHhCCCCCCEEEeeCCCcc
Confidence            77553 355655 466777777777777666532          244566667777777766655

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.51  E-value=7.4e-14  Score=128.42  Aligned_cols=159  Identities=21%  Similarity=0.182  Sum_probs=130.2

Q ss_pred             CcCCCCCCccCCccEEEEeCCCCCCCCC--CC-CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-
Q 016966           77 CREWSDGSTIKHFTSIVLHGIKPNLLPE--VL-ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-  152 (379)
Q Consensus        77 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-  152 (379)
                      +...+. .....++.|++++|.+..++.  +. .+++|+.|++++|.+        ..+++..|..+++|++|+|++|. 
T Consensus        30 l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i--------~~i~~~~~~~l~~L~~L~Ls~N~l  100 (361)
T 2xot_A           30 LPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL--------NFISSEAFVPVPNLRYLDLSSNHL  100 (361)
T ss_dssp             CSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCC--------CEECTTTTTTCTTCCEEECCSSCC
T ss_pred             cCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcC--------CccChhhccCCCCCCEEECCCCcC
Confidence            444443 345679999999999976664  33 789999999999764        45666678999999999999998 


Q ss_pred             ---CCccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccchhh----cCCCCCCEEeccCCCCCcccC
Q 016966          153 ---LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPVEV----GELTWLKLLDLRDCCFLKVIP  223 (379)
Q Consensus       153 ---lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~~----~~l~~L~~L~l~~~~~~~~~~  223 (379)
                         .+..+..+.+|++|++++|.+..  +..+..+++|++|++++|.++.+|..+    ..+++|++|++++|.. ..+|
T Consensus       101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l-~~l~  179 (361)
T 2xot_A          101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL-KKLP  179 (361)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC-CCCC
T ss_pred             CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC-CccC
Confidence               44568899999999999999988  578999999999999999999999765    5799999999999764 5677


Q ss_pred             hhhhCCCCC--CcEEEecCCCCcC
Q 016966          224 PNILSKLSH--LEELYIGRESFVD  245 (379)
Q Consensus       224 ~~~l~~l~~--L~~L~l~~~~~~~  245 (379)
                      ...+..++.  ++.|++.+|.+..
T Consensus       180 ~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          180 LTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             HHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             HHHhhhccHhhcceEEecCCCccC
Confidence            655788887  4889999998864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.48  E-value=1.4e-14  Score=144.86  Aligned_cols=159  Identities=16%  Similarity=0.159  Sum_probs=100.9

Q ss_pred             ccCCccEEEEeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCC
Q 016966           85 TIKHFTSIVLHGIKPNLLPEVL-ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLL  160 (379)
Q Consensus        85 ~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l  160 (379)
                      ..+++++|.+..+.+...+... ...+|+.+.+........    ...+++..|..++.|++|+|++|.   +|..+..+
T Consensus       171 s~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n----~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l  246 (727)
T 4b8c_D          171 STPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIEN----RMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKY  246 (727)
T ss_dssp             -------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGC
T ss_pred             cCCccceEEeeCCCCCcchhhHhhcCccCcccccCcccccc----ceecChhhhccCCCCcEEECCCCCCCCCChhhcCC
Confidence            3467889999888875554322 444444444433111100    123556678899999999999998   88888899


Q ss_pred             CCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEec
Q 016966          161 SNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIG  239 (379)
Q Consensus       161 ~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  239 (379)
                      .+|++|+|++|.++. |..++.+++|++|+|++|.++.+|..++.+++|++|++++|.. ..+|.. ++.+++|+.|+++
T Consensus       247 ~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l-~~lp~~-~~~l~~L~~L~L~  324 (727)
T 4b8c_D          247 DFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMV-TTLPWE-FGNLCNLQFLGVE  324 (727)
T ss_dssp             CSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCC-CCCCSS-TTSCTTCCCEECT
T ss_pred             CCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCC-CccChh-hhcCCCccEEeCC
Confidence            999999999999998 8889999999999999999999999999999999999999764 588887 8999999999999


Q ss_pred             CCCCcChhhh
Q 016966          240 RESFVDWEEE  249 (379)
Q Consensus       240 ~~~~~~~~~~  249 (379)
                      +|.+.+..+.
T Consensus       325 ~N~l~~~~p~  334 (727)
T 4b8c_D          325 GNPLEKQFLK  334 (727)
T ss_dssp             TSCCCSHHHH
T ss_pred             CCccCCCChH
Confidence            9999876543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.45  E-value=2.2e-13  Score=111.06  Aligned_cols=131  Identities=25%  Similarity=0.307  Sum_probs=111.8

Q ss_pred             cCCCCCcEEEeecCCCC--C-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCc
Q 016966          158 GLLSNLRTLSLCSCGLP--D-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLE  234 (379)
Q Consensus       158 ~~l~~L~~L~l~~~~l~--~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  234 (379)
                      ...++|++|++++|.+.  . |..+..+++|++|++++|.++.+ ..+..+++|++|++++|.....+|.. ++.+++|+
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~   98 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDML-AEKLPNLT   98 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHH-HHHCTTCC
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHH-HhhCCCCC
Confidence            34578999999999998  4 66779999999999999999988 68899999999999998876666665 67799999


Q ss_pred             EEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCc----cc-cccCCcEEEEEeecc
Q 016966          235 ELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPR----GL-LLEKLERYSIYIRRY  299 (379)
Q Consensus       235 ~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~-~~~~L~~L~l~~~~~  299 (379)
                      .|++++|.+.+.+         .+..+..+++|+.|++++|.++.++.    .+ .+++|+.|++..+..
T Consensus        99 ~L~Ls~N~l~~~~---------~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A           99 HLNLSGNKLKDIS---------TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             EEECBSSSCCSSG---------GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             EEeccCCccCcch---------hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            9999999998753         34788999999999999999998886    33 689999998865543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.43  E-value=3.5e-14  Score=139.29  Aligned_cols=105  Identities=12%  Similarity=0.090  Sum_probs=50.7

Q ss_pred             hcCCCCCcEEEeeccCCCC-CCccc--cccCCcEEEEEeecccccCc----ccccceEEEEe-CCcccchHHH---HHHh
Q 016966          261 LKHLPNLTSLEVHVRDVSS-LPRGL--LLEKLERYSIYIRRYFSRKT----GIWCRQFRVEL-NNKICLKDSL---IVQL  329 (379)
Q Consensus       261 l~~l~~L~~L~l~~~~~~~-~~~~~--~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~l-~~~~~~~~~~---~~~~  329 (379)
                      +..+++|+.|++++ .++. ....+  .+++|+.|+++.+.......    ..+++...|.+ ++... ...+   ...+
T Consensus       428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~-~~~~~~~~~~l  505 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG-DKALLANASKL  505 (594)
T ss_dssp             HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC-HHHHHHTGGGG
T ss_pred             HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc-HHHHHHHHHhC
Confidence            44455566666643 2221 11111  25667777775544321111    22455557777 33332 1111   1224


Q ss_pred             cccceeeccccccccccccccccccccCCCCcEEEecCCCC
Q 016966          330 QRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDL  370 (379)
Q Consensus       330 ~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~  370 (379)
                      ++|+.|++++|+  . ...........+|.|+...+..+..
T Consensus       506 ~~L~~L~l~~~~--~-~~~~~~~l~~~lp~l~i~~~~~~~~  543 (594)
T 2p1m_B          506 ETMRSLWMSSCS--V-SFGACKLLGQKMPKLNVEVIDERGA  543 (594)
T ss_dssp             GGSSEEEEESSC--C-BHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred             CCCCEEeeeCCC--C-CHHHHHHHHHhCCCCEEEEecCCCc
Confidence            788888888887  3 2221111123477777666665543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.43  E-value=2.3e-13  Score=108.61  Aligned_cols=58  Identities=28%  Similarity=0.278  Sum_probs=22.9

Q ss_pred             cCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcc-cchhhcCCCCCCEEeccC
Q 016966          158 GLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVK-LPVEVGELTWLKLLDLRD  215 (379)
Q Consensus       158 ~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~  215 (379)
                      ..+++|++|++++|.++....++.+++|++|++++|.++. +|..+..+++|++|++++
T Consensus        39 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~   97 (149)
T 2je0_A           39 DEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG   97 (149)
T ss_dssp             TTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTT
T ss_pred             hhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCC
Confidence            3333444444444433333333334444444444444433 333333344444444444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.42  E-value=1.5e-13  Score=109.66  Aligned_cols=125  Identities=23%  Similarity=0.265  Sum_probs=106.2

Q ss_pred             CCCCCcEEEeecCCCC--C-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcE
Q 016966          159 LLSNLRTLSLCSCGLP--D-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEE  235 (379)
Q Consensus       159 ~l~~L~~L~l~~~~l~--~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  235 (379)
                      ..++|++|++++|.+.  . |..+..+++|++|++++|.++.+ ..+..+++|++|++++|.....+|.. ++.+++|++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL-AEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHH-HHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHH-hhhCCCCCE
Confidence            3467899999999988  3 67778999999999999999988 68899999999999998876666664 678999999


Q ss_pred             EEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCc----cc-cccCCcEEEE
Q 016966          236 LYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPR----GL-LLEKLERYSI  294 (379)
Q Consensus       236 L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~-~~~~L~~L~l  294 (379)
                      |++++|.+.+.+         .+..++.+++|+.|++++|.++.++.    .+ .+++|+.|++
T Consensus        93 L~ls~N~i~~~~---------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           93 LNLSGNKIKDLS---------TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             EECTTSCCCSHH---------HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             EECCCCcCCChH---------HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            999999998753         34778999999999999999998776    23 6889998865

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.38  E-value=8.8e-13  Score=108.32  Aligned_cols=82  Identities=17%  Similarity=0.220  Sum_probs=34.8

Q ss_pred             CCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhh-cCCCCCCEEeccCCCCCcccCh-hhhCCCCCCcEEEec
Q 016966          162 NLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEV-GELTWLKLLDLRDCCFLKVIPP-NILSKLSHLEELYIG  239 (379)
Q Consensus       162 ~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~  239 (379)
                      +|++|++++|.++..+.+..+++|++|++++|.++.+|..+ ..+++|++|++++|.. ..+|. ..++.+++|+.|+++
T Consensus        43 ~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~  121 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCIL  121 (176)
T ss_dssp             CCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECC
T ss_pred             CCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEec
Confidence            44444444444443333444444444444444444444322 4444444444444332 22332 113444444444444


Q ss_pred             CCCCc
Q 016966          240 RESFV  244 (379)
Q Consensus       240 ~~~~~  244 (379)
                      +|.+.
T Consensus       122 ~N~i~  126 (176)
T 1a9n_A          122 RNPVT  126 (176)
T ss_dssp             SSGGG
T ss_pred             CCCCC
Confidence            44443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.38  E-value=2.5e-12  Score=107.21  Aligned_cols=102  Identities=24%  Similarity=0.226  Sum_probs=54.5

Q ss_pred             ceeEEEecCCC---CCc--cccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEec
Q 016966          142 EVRVVNLTDMI---LPS--SLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDL  213 (379)
Q Consensus       142 ~L~~L~l~~~~---lp~--~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l  213 (379)
                      +|++|++++|.   ++.  .++.+++|++|++++|.++.  |..+..+++|++|++++|.++.++. .+..+++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            55556665555   222  25555556666665555555  3455555556666665555554443 2455555555555


Q ss_pred             cCCCCCcccChhhhCCCCCCcEEEecCCCCc
Q 016966          214 RDCCFLKVIPPNILSKLSHLEELYIGRESFV  244 (379)
Q Consensus       214 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  244 (379)
                      ++|......|.. ++.+++|++|++++|.+.
T Consensus       110 ~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          110 YDNQISCVMPGS-FEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSSCCCEECTTS-STTCTTCCEEECTTCCBC
T ss_pred             CCCcCCeeCHHH-hhcCCCCCEEEeCCCCcc
Confidence            555444433333 455555555555555554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.38  E-value=3.1e-12  Score=106.63  Aligned_cols=125  Identities=18%  Similarity=0.166  Sum_probs=105.2

Q ss_pred             cEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccCh-hhhhCCCceeEEEecCCC----CCccccCCCCCc
Q 016966           90 TSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPD-NFFKSMIEVRVVNLTDMI----LPSSLGLLSNLR  164 (379)
Q Consensus        90 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~  164 (379)
                      +.++++++.+..+|... .++++.|++++|.+.        .+++ .+|..+++|++|++++|.    .|..+..+++|+
T Consensus        11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~--------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   81 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELG--------RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ   81 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCC--------SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCC--------ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence            68899999988888643 348999999997653        3443 457899999999999998    577899999999


Q ss_pred             EEEeecCCCCC--cccccCcCCCcEEEeeCCcCccc-chhhcCCCCCCEEeccCCCCCcccC
Q 016966          165 TLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKL-PVEVGELTWLKLLDLRDCCFLKVIP  223 (379)
Q Consensus       165 ~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~  223 (379)
                      +|++++|.++.  +..+..+++|++|++++|.++.+ |..+..+++|++|++++|......+
T Consensus        82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            99999999998  45688999999999999999966 6678899999999999987765544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.37  E-value=1.3e-12  Score=107.27  Aligned_cols=132  Identities=20%  Similarity=0.195  Sum_probs=108.8

Q ss_pred             cccCCCCCcEEEeecCCCCCcccccCcC-CCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCc
Q 016966          156 SLGLLSNLRTLSLCSCGLPDISFVGYLK-KLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLE  234 (379)
Q Consensus       156 ~i~~l~~L~~L~l~~~~l~~~~~~~~l~-~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  234 (379)
                      .+..+.+|++|++++|.++..+.+..+. +|++|++++|.++.+ ..+..+++|++|++++|.. ..+|...++.+++|+
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLT   91 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTCC
T ss_pred             hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcc-cccCcchhhcCCCCC
Confidence            3566788899999999888854566665 999999999999988 5889999999999999775 456665468999999


Q ss_pred             EEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCcc----c-cccCCcEEEEEeec
Q 016966          235 ELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRG----L-LLEKLERYSIYIRR  298 (379)
Q Consensus       235 ~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----~-~~~~L~~L~l~~~~  298 (379)
                      .|++++|.+...+         ....++.+++|+.|++++|.+..+|..    + .+++|+.|+++.+.
T Consensus        92 ~L~L~~N~i~~~~---------~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           92 ELILTNNSLVELG---------DLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             EEECCSCCCCCGG---------GGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             EEECCCCcCCcch---------hhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            9999999997754         234788999999999999999988875    3 68999999885444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.34  E-value=8.5e-12  Score=103.98  Aligned_cols=103  Identities=22%  Similarity=0.296  Sum_probs=61.5

Q ss_pred             CceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEecc
Q 016966          141 IEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLR  214 (379)
Q Consensus       141 ~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~  214 (379)
                      ++|++|++++|.   +|..+..+.+|++|++++|.++.  +..+..+++|++|++++|.++.++. .+..+++|++|+++
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            356666666665   55566666666666666666665  3446666666666666666665553 45566666666666


Q ss_pred             CCCCCcccChhhhCCCCCCcEEEecCCCCc
Q 016966          215 DCCFLKVIPPNILSKLSHLEELYIGRESFV  244 (379)
Q Consensus       215 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  244 (379)
                      +|.. ..++...+..+++|+.|++.+|.+.
T Consensus       111 ~N~l-~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          111 GNDI-SVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SSCC-CBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCC-CeeChhhhhcCccccEEEeCCCCee
Confidence            6443 3444433556666666666666554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.32  E-value=1.8e-11  Score=100.43  Aligned_cols=88  Identities=27%  Similarity=0.405  Sum_probs=49.6

Q ss_pred             ccCCCCCcEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCCCCCcccChhhhCCCCCC
Q 016966          157 LGLLSNLRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCCFLKVIPPNILSKLSHL  233 (379)
Q Consensus       157 i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L  233 (379)
                      +..+++|++|++++|.++. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|.. ..+|...+..+++|
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L  126 (177)
T 2o6r_A           48 FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSL  126 (177)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTC
T ss_pred             hcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcc-eEeCHHHhcCCccc
Confidence            3455555555555555555 2 2345566666666666666655543 45566666666666543 34444434556666


Q ss_pred             cEEEecCCCCcC
Q 016966          234 EELYIGRESFVD  245 (379)
Q Consensus       234 ~~L~l~~~~~~~  245 (379)
                      ++|++++|.+..
T Consensus       127 ~~L~l~~N~~~~  138 (177)
T 2o6r_A          127 QKIWLHTNPWDC  138 (177)
T ss_dssp             CEEECCSSCBCC
T ss_pred             CEEEecCCCeec
Confidence            666666666554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.30  E-value=2.6e-12  Score=128.47  Aligned_cols=150  Identities=19%  Similarity=0.173  Sum_probs=99.6

Q ss_pred             CCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEE-----ecCCC---CCccccCCCCCcEEEeecCCCCC-ccc
Q 016966          108 CPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVN-----LTDMI---LPSSLGLLSNLRTLSLCSCGLPD-ISF  178 (379)
Q Consensus       108 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~-----l~~~~---lp~~i~~l~~L~~L~l~~~~l~~-~~~  178 (379)
                      .+.++.|.+.+|.+.        ..+...+ ....|+.+.     +..+.   .+..+..+.+|+.|++++|.+.. +..
T Consensus       172 ~~~~~~l~L~~n~~~--------~~~~~~l-~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~  242 (727)
T 4b8c_D          172 TPLTPKIELFANGKD--------EANQALL-QHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISAN  242 (727)
T ss_dssp             -----------------------------------------------------------CCCCCCEEECTTSCCSCCCGG
T ss_pred             CCccceEEeeCCCCC--------cchhhHh-hcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChh
Confidence            355777888775432        2333222 223333333     33333   56778999999999999999988 788


Q ss_pred             ccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccch
Q 016966          179 VGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASL  258 (379)
Q Consensus       179 ~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  258 (379)
                      +..+++|++|+|++|.++.+|..++.+++|++|++++|... .+|.. ++.+++|+.|++++|.+..           ++
T Consensus       243 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~L~~N~l~~-----------lp  309 (727)
T 4b8c_D          243 IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAE-LGSCFQLKYFYFFDNMVTT-----------LP  309 (727)
T ss_dssp             GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSS-GGGGTTCSEEECCSSCCCC-----------CC
T ss_pred             hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChh-hcCCCCCCEEECCCCCCCc-----------cC
Confidence            88999999999999999999999999999999999998865 78877 7999999999999999875           56


Q ss_pred             HhhcCCCCCcEEEeeccCCCC
Q 016966          259 EELKHLPNLTSLEVHVRDVSS  279 (379)
Q Consensus       259 ~~l~~l~~L~~L~l~~~~~~~  279 (379)
                      ..++.+++|+.|++++|.++.
T Consensus       310 ~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          310 WEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             SSTTSCTTCCCEECTTSCCCS
T ss_pred             hhhhcCCCccEEeCCCCccCC
Confidence            679999999999999999884

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.30  E-value=9.1e-12  Score=120.92  Aligned_cols=120  Identities=18%  Similarity=0.258  Sum_probs=101.5

Q ss_pred             CCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCC
Q 016966          162 NLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE  241 (379)
Q Consensus       162 ~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  241 (379)
                      .|++|++++|.++.++.++.+++|++|++++|.++.+|..++.+++|++|++++|.... +| . ++.+++|+.|++++|
T Consensus       442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~-l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-G-VANLPRLQELLLCNN  518 (567)
T ss_dssp             TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-G-GTTCSSCCEEECCSS
T ss_pred             CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-c-cCCCCCCcEEECCCC
Confidence            58899999999988334999999999999999999999999999999999999977554 67 4 799999999999999


Q ss_pred             CCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc-----cccCCcEEE
Q 016966          242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL-----LLEKLERYS  293 (379)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~  293 (379)
                      .+.+..         .+..++.+++|+.|++++|.++.+|...     .+++|+.|+
T Consensus       519 ~l~~~~---------~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          519 RLQQSA---------AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CCCSSS---------TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCC---------CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            988741         1678889999999999999998776544     378888875

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.30  E-value=1.5e-11  Score=102.47  Aligned_cols=122  Identities=20%  Similarity=0.201  Sum_probs=71.8

Q ss_pred             eEEEecCCC---CCccccCCCCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCC
Q 016966          144 RVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCF  218 (379)
Q Consensus       144 ~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~  218 (379)
                      ++++++++.   +|..+.  .+|++|++++|.++. |..+..+++|++|++++|.++.++. .+..+++|++|++++|..
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            456666655   554332  466666666666666 5666666666666666666665553 456666666666666553


Q ss_pred             CcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC
Q 016966          219 LKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS  278 (379)
Q Consensus       219 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  278 (379)
                      . .++...++.+++|+.|++++|.+....          ...+..+++|+.|++++|.+.
T Consensus        91 ~-~i~~~~f~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           91 R-CIPPRTFDGLKSLRLLSLHGNDISVVP----------EGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             C-BCCTTTTTTCTTCCEEECCSSCCCBCC----------TTTTTTCTTCCEEECCSSCEE
T ss_pred             C-EeCHHHhCCCCCCCEEECCCCCCCeeC----------hhhhhcCccccEEEeCCCCee
Confidence            3 333333566666666666666665432          234555666666666665543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.29  E-value=9.2e-12  Score=120.88  Aligned_cols=121  Identities=22%  Similarity=0.190  Sum_probs=103.1

Q ss_pred             ceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCC
Q 016966          142 EVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCC  217 (379)
Q Consensus       142 ~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~  217 (379)
                      .|++|++++|.   +|. ++.+++|++|++++|.++. |..++.+++|++|++++|.++.+| .++.+++|++|++++|.
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR  519 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence            57899999998   776 9999999999999999999 899999999999999999999999 89999999999999987


Q ss_pred             CCccc-ChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEe
Q 016966          218 FLKVI-PPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEV  272 (379)
Q Consensus       218 ~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  272 (379)
                      ..... |.. ++.+++|+.|++++|.+.+.++       .....+..+++|+.|++
T Consensus       520 l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~-------~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          520 LQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG-------IQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCSSSTTGG-GGGCTTCCEEECTTSGGGGSSS-------CTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCcHH-HhcCCCCCEEEecCCcCCCCcc-------HHHHHHHHCcccCccCC
Confidence            66554 666 7999999999999999876431       12233445788888853

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.26  E-value=5.6e-11  Score=97.50  Aligned_cols=123  Identities=22%  Similarity=0.264  Sum_probs=81.2

Q ss_pred             eeEEEecCCC---CCccccCCCCCcEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCC
Q 016966          143 VRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDC  216 (379)
Q Consensus       143 L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~  216 (379)
                      .+.++++++.   +|..+  ..+|++|++++|.+.. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            3455665555   44332  3577777777777776 3 4457777888888888877777654 567777888888776


Q ss_pred             CCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC
Q 016966          217 CFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS  278 (379)
Q Consensus       217 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  278 (379)
                      ... .++...++.+++|+.|++++|.+....          ...+..+++|+.|++++|.+.
T Consensus        87 ~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~----------~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           87 KLQ-SLPNGVFDKLTQLKELALDTNQLKSVP----------DGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECCSSCCSCCC----------TTTTTTCTTCCEEECCSSCBC
T ss_pred             Ccc-ccCHHHhhCCcccCEEECcCCcceEeC----------HHHhcCCcccCEEEecCCCee
Confidence            543 444444577777777777777776532          233566777777777777665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.24  E-value=3.9e-14  Score=118.83  Aligned_cols=107  Identities=21%  Similarity=0.261  Sum_probs=65.5

Q ss_pred             hhhCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEE
Q 016966          136 FFKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLL  211 (379)
Q Consensus       136 ~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L  211 (379)
                      .|..+++|++|++++|.   +| .+..+++|++|++++|.+.. |..+..+++|++|++++|.++.+| .+..+++|++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L  120 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL  120 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred             HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence            34566677777776666   55 56666666777776666666 555555566667777666666665 46666666666


Q ss_pred             eccCCCCCcccCh-hhhCCCCCCcEEEecCCCCcC
Q 016966          212 DLRDCCFLKVIPP-NILSKLSHLEELYIGRESFVD  245 (379)
Q Consensus       212 ~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~  245 (379)
                      ++++|.... ++. ..+..+++|+.|++++|.+.+
T Consensus       121 ~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          121 YMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             ECCCCcCCc-hhHHHHHhcCCCCCEEEecCCcccc
Confidence            666654332 221 225666666666666665543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.23  E-value=5.6e-13  Score=111.73  Aligned_cols=81  Identities=17%  Similarity=0.205  Sum_probs=40.0

Q ss_pred             hhCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccch--hhcCCCCCCEE
Q 016966          137 FKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPV--EVGELTWLKLL  211 (379)
Q Consensus       137 ~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L  211 (379)
                      +..+++|++|++++|.   +|..+..+++|++|++++|.+..++.+..+++|++|++++|.++.++.  .+..+++|++|
T Consensus        66 ~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L  145 (198)
T 1ds9_A           66 LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL  145 (198)
T ss_dssp             HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred             cccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEE
Confidence            3444555555555554   444444444555555555555442244455555555555555554432  34455555555


Q ss_pred             eccCCC
Q 016966          212 DLRDCC  217 (379)
Q Consensus       212 ~l~~~~  217 (379)
                      ++++|.
T Consensus       146 ~l~~N~  151 (198)
T 1ds9_A          146 LLAGNP  151 (198)
T ss_dssp             EECSCH
T ss_pred             EecCCc
Confidence            555543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.19  E-value=3.4e-11  Score=109.13  Aligned_cols=99  Identities=17%  Similarity=0.162  Sum_probs=78.4

Q ss_pred             cCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCc-EEEecCCCCcChhhhhhcccccchH
Q 016966          182 LKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLE-ELYIGRESFVDWEEEVEGVKNASLE  259 (379)
Q Consensus       182 l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~  259 (379)
                      +++|+.+++.+|+++.+|. .+..+++|+.+++.++  +..++...+..+++|+ .+.+.. .+...+          ..
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~----------~~  291 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIE----------FG  291 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEEC----------TT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEc----------hh
Confidence            6789999999888888886 4778889999998885  6677777788888998 888885 555443          56


Q ss_pred             hhcCCCCCcEEEeeccCCCCCCccc--cccCCcEEE
Q 016966          260 ELKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYS  293 (379)
Q Consensus       260 ~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~  293 (379)
                      .+..|++|+.+++..+.+..++...  .+++|+.+.
T Consensus       292 aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          292 AFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             hhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            7888889999998888888777754  578888764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.09  E-value=5.8e-10  Score=91.12  Aligned_cols=98  Identities=22%  Similarity=0.380  Sum_probs=54.3

Q ss_pred             eEEEecCCC---CCccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCCC
Q 016966          144 RVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCC  217 (379)
Q Consensus       144 ~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~  217 (379)
                      +.++++++.   +|..+.  .+|++|++++|.+..  +..+..+++|++|++++|+++.+|.. +..+++|++|++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            445555554   444332  556666666666555  34455666666666666666666543 3556666666666644


Q ss_pred             CCcccChhhhCCCCCCcEEEecCCCCc
Q 016966          218 FLKVIPPNILSKLSHLEELYIGRESFV  244 (379)
Q Consensus       218 ~~~~~~~~~l~~l~~L~~L~l~~~~~~  244 (379)
                      . ..+|...++.+++|+.|++++|.+.
T Consensus        93 l-~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           93 L-KSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             C-CCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             c-ceeCHHHhccccCCCEEEeCCCCcc
Confidence            3 3344433555666666666666554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.09  E-value=6e-10  Score=90.71  Aligned_cols=100  Identities=21%  Similarity=0.299  Sum_probs=57.9

Q ss_pred             eeEEEecCCC---CCccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCC
Q 016966          143 VRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDC  216 (379)
Q Consensus       143 L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~  216 (379)
                      .++++++++.   +|..+  ..+|++|++++|.++.  +..+..+++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            3455555554   44433  2556666666666665  34466666666666666666666653 356666666666665


Q ss_pred             CCCcccChhhhCCCCCCcEEEecCCCCcC
Q 016966          217 CFLKVIPPNILSKLSHLEELYIGRESFVD  245 (379)
Q Consensus       217 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  245 (379)
                      .. ..++...+..+++|+.|++++|.+..
T Consensus        89 ~l-~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           89 QL-KSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CC-CCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             cc-CEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            43 33444335666666666666665543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.08  E-value=8.3e-10  Score=90.21  Aligned_cols=107  Identities=19%  Similarity=0.180  Sum_probs=83.2

Q ss_pred             CcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccc-hhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecC
Q 016966          163 LRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLP-VEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGR  240 (379)
Q Consensus       163 L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  240 (379)
                      -+.++++++.+.. |..+.  ++|++|++++|.++.++ ..+..+++|++|++++|. +..+|...++.+++|+.|++++
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCC
Confidence            3678888888877 66554  78899999999888774 467888999999998865 4556666568889999999998


Q ss_pred             CCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCc
Q 016966          241 ESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPR  282 (379)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  282 (379)
                      |.+....          ...+..+++|+.|++++|.+...+.
T Consensus        91 N~l~~l~----------~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIP----------RGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCC----------TTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeC----------HHHhccccCCCEEEeCCCCcccccc
Confidence            8887643          3347788889999998888775554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.06  E-value=1e-09  Score=89.35  Aligned_cols=106  Identities=21%  Similarity=0.233  Sum_probs=77.9

Q ss_pred             CcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccc-hhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecC
Q 016966          163 LRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLP-VEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGR  240 (379)
Q Consensus       163 L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  240 (379)
                      .+.++++++.++. |..+.  ++|++|++++|.++.++ ..+..+++|++|++++|.. ..++...+..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCc-CccChhhccCCCCCCEEECCC
Confidence            5678888888877 65553  67888888888888774 4577888888888888654 455655567888888888888


Q ss_pred             CCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCC
Q 016966          241 ESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLP  281 (379)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  281 (379)
                      |.+....          +..+..+++|+.|++++|.+...+
T Consensus        88 N~l~~~~----------~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           88 NQLKSIP----------RGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SCCCCCC----------TTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CccCEeC----------HHHhcCCCCCCEEEeCCCCCCCCc
Confidence            8877643          345777888888888888766433

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.01  E-value=6.7e-11  Score=108.79  Aligned_cols=111  Identities=18%  Similarity=0.097  Sum_probs=56.5

Q ss_pred             CCCcEEEeecCCCCC--cccc-----cCcCCCcEEEeeCCcCc-----ccchhhcCCCCCCEEeccCCCCCccc----Ch
Q 016966          161 SNLRTLSLCSCGLPD--ISFV-----GYLKKLEILCLRGSDIV-----KLPVEVGELTWLKLLDLRDCCFLKVI----PP  224 (379)
Q Consensus       161 ~~L~~L~l~~~~l~~--~~~~-----~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~----~~  224 (379)
                      .+|++|++++|.+..  ...+     ...++|++|++++|.++     .++..+...++|++|++++|.....-    +.
T Consensus       126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~  205 (372)
T 3un9_A          126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA  205 (372)
T ss_dssp             HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred             HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence            355566666665544  2222     12355666666666554     23334455566666666665532211    11


Q ss_pred             hhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC
Q 016966          225 NILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS  278 (379)
Q Consensus       225 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  278 (379)
                      . +...++|++|++++|.+.+..      ...+...+...++|++|++++|.++
T Consensus       206 ~-L~~~~~L~~L~Ls~N~i~~~g------~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          206 Q-LDRNRQLQELNVAYNGAGDTA------ALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             H-GGGCSCCCEEECCSSCCCHHH------HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             H-HhcCCCcCeEECCCCCCCHHH------HHHHHHHHHhCCCCCEEeccCCCCC
Confidence            1 344556666666666655422      1123344445566666666666554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.98  E-value=2e-08  Score=93.25  Aligned_cols=203  Identities=13%  Similarity=0.127  Sum_probs=88.3

Q ss_pred             ccChhhhhCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccch-hhcCC
Q 016966          131 TIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPV-EVGEL  205 (379)
Q Consensus       131 ~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l  205 (379)
                      .+....|.++ +|+.+.+...-   -+..+..+.+|+.+++..+.++. +...-...+|+.+.+.. .+..++. .+..+
T Consensus       148 ~I~~~aF~~~-~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~  225 (401)
T 4fdw_A          148 SIGDMAFFNS-TVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKT  225 (401)
T ss_dssp             EECTTTTTTC-CCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTC
T ss_pred             EECHHhcCCC-CceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCC
Confidence            3444444442 34555544322   22334444555555555444444 22111234455555442 2333332 23344


Q ss_pred             CCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC-----CC
Q 016966          206 TWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS-----SL  280 (379)
Q Consensus       206 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~  280 (379)
                      ++|+.+.+..+  +..++...+.+ ++|+.+.+. +.+...+          ...+..|++|+.+.+..+...     .+
T Consensus       226 ~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp-~~i~~I~----------~~aF~~c~~L~~l~l~~~~~~~~~~~~I  291 (401)
T 4fdw_A          226 SQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLP-NGVTNIA----------SRAFYYCPELAEVTTYGSTFNDDPEAMI  291 (401)
T ss_dssp             TTCCCEECCTT--CCEECTTTTTT-CCCSEEEEE-TTCCEEC----------TTTTTTCTTCCEEEEESSCCCCCTTCEE
T ss_pred             CCCCEEecCCC--ccCcccccccc-CCccEEEeC-CCccEEC----------hhHhhCCCCCCEEEeCCccccCCcccEE
Confidence            45555554431  23333333333 445555543 3333221          334455555555555544332     23


Q ss_pred             Cccc--cccCCcEEEEEeecccccCcccccceEEEEeCCcccchHHHHHHhcccceeeccccccccccccccccccccCC
Q 016966          281 PRGL--LLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSS  358 (379)
Q Consensus       281 ~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~  358 (379)
                      +...  .|++|+.+.+.                    ++...++......+++|+.+.|.++    ++.++...+. ++ 
T Consensus       292 ~~~aF~~c~~L~~l~l~--------------------~~i~~I~~~aF~~c~~L~~l~lp~~----l~~I~~~aF~-~~-  345 (401)
T 4fdw_A          292 HPYCLEGCPKLARFEIP--------------------ESIRILGQGLLGGNRKVTQLTIPAN----VTQINFSAFN-NT-  345 (401)
T ss_dssp             CTTTTTTCTTCCEECCC--------------------TTCCEECTTTTTTCCSCCEEEECTT----CCEECTTSSS-SS-
T ss_pred             CHHHhhCCccCCeEEeC--------------------CceEEEhhhhhcCCCCccEEEECcc----ccEEcHHhCC-CC-
Confidence            3222  34555555442                    2222232222111366777766433    4555554443 34 


Q ss_pred             CCcEEEecCCCCccCCC
Q 016966          359 HLKRLRLEGSDLALNPA  375 (379)
Q Consensus       359 ~L~~L~l~~c~~l~~~~  375 (379)
                      +|+.+.+.++...+.++
T Consensus       346 ~L~~l~l~~n~~~~l~~  362 (401)
T 4fdw_A          346 GIKEVKVEGTTPPQVFE  362 (401)
T ss_dssp             CCCEEEECCSSCCBCCC
T ss_pred             CCCEEEEcCCCCccccc
Confidence            67777776665544443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.87  E-value=1.7e-10  Score=106.04  Aligned_cols=156  Identities=13%  Similarity=0.052  Sum_probs=113.4

Q ss_pred             ccCCccEEEEeCCCCCCCC-----CC-C-CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCCC----
Q 016966           85 TIKHFTSIVLHGIKPNLLP-----EV-L-ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMIL----  153 (379)
Q Consensus        85 ~~~~l~~L~l~~~~~~~~~-----~~-~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l----  153 (379)
                      ..+.++.|++++|.+....     .. . ..++|+.|++++|.+.+       .....++..+++|+.|++++|.+    
T Consensus        70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~-------~~~~~l~~~L~~L~~L~Ls~n~l~~~~  142 (372)
T 3un9_A           70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP-------AGLRTLLPVFLRARKLGLQLNSLGPEA  142 (372)
T ss_dssp             HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH-------HHHHHTHHHHHTEEEEECCSSCCCHHH
T ss_pred             HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH-------HHHHHHHHHHHhccHhhcCCCCCCHHH
Confidence            3467899999999874321     11 1 34799999999977633       22223344567899999999981    


Q ss_pred             ----Cccc-cCCCCCcEEEeecCCCCC--c----ccccCcCCCcEEEeeCCcCc-----ccchhhcCCCCCCEEeccCCC
Q 016966          154 ----PSSL-GLLSNLRTLSLCSCGLPD--I----SFVGYLKKLEILCLRGSDIV-----KLPVEVGELTWLKLLDLRDCC  217 (379)
Q Consensus       154 ----p~~i-~~l~~L~~L~l~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~  217 (379)
                          ...+ ...++|++|++++|.++.  .    ..+..+++|++|++++|.+.     .++..+...++|++|++++|.
T Consensus       143 ~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          143 CKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             HHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred             HHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence                1222 346889999999999876  2    34567899999999999887     345667788899999999987


Q ss_pred             CCcccChh---hhCCCCCCcEEEecCCCCcChh
Q 016966          218 FLKVIPPN---ILSKLSHLEELYIGRESFVDWE  247 (379)
Q Consensus       218 ~~~~~~~~---~l~~l~~L~~L~l~~~~~~~~~  247 (379)
                      ....-...   .+...++|++|++++|.+....
T Consensus       223 i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g  255 (372)
T 3un9_A          223 AGDTAALALARAAREHPSLELLHLYFNELSSEG  255 (372)
T ss_dssp             CCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence            65432211   1456789999999999987654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.86  E-value=1.1e-08  Score=92.41  Aligned_cols=165  Identities=12%  Similarity=0.088  Sum_probs=124.1

Q ss_pred             cCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-----------
Q 016966           86 IKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-----------  152 (379)
Q Consensus        86 ~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-----------  152 (379)
                      +++++.+.+.. .+..++.  +..+++|+.+.+..|.        ...+++..|..+.++..+......           
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~--------i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~  170 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT--------APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHF  170 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS--------CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTS
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC--------ccccchhhhcCCCceEEecCcchhhhhcccccccc
Confidence            67888888887 6666665  4488899999998854        334566666666666666544411           


Q ss_pred             -------------------CCc----------c-----------------c-cCCCCCcEEEeecCCCCC-c-ccccCcC
Q 016966          153 -------------------LPS----------S-----------------L-GLLSNLRTLSLCSCGLPD-I-SFVGYLK  183 (379)
Q Consensus       153 -------------------lp~----------~-----------------i-~~l~~L~~L~l~~~~l~~-~-~~~~~l~  183 (379)
                                         ++.          .                 + ..+.+|+++++..|.++. + ..+..+.
T Consensus       171 ~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~  250 (329)
T 3sb4_A          171 AFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK  250 (329)
T ss_dssp             CEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT
T ss_pred             ccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC
Confidence                               000          0                 0 027899999999999888 4 6788999


Q ss_pred             CCcEEEeeCCcCcccch-hhcCCCCCC-EEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhh
Q 016966          184 KLEILCLRGSDIVKLPV-EVGELTWLK-LLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEEL  261 (379)
Q Consensus       184 ~L~~L~l~~~~l~~lp~-~~~~l~~L~-~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l  261 (379)
                      +|+.+++..+ +..++. .+..+++|+ .+.+.+  .+..++...+..+++|+.+.+..+.+...+          ...+
T Consensus       251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~----------~~aF  317 (329)
T 3sb4_A          251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLG----------DELF  317 (329)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEEC----------TTTT
T ss_pred             CCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccc----------hhhh
Confidence            9999999987 888876 578999999 999988  456777666999999999999888888764          5678


Q ss_pred             cCCCCCcEEEe
Q 016966          262 KHLPNLTSLEV  272 (379)
Q Consensus       262 ~~l~~L~~L~l  272 (379)
                      ..+++|+.+..
T Consensus       318 ~~~~~L~~ly~  328 (329)
T 3sb4_A          318 GNGVPSKLIYK  328 (329)
T ss_dssp             CTTCCCCEEEC
T ss_pred             cCCcchhhhcc
Confidence            89999998864

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.83  E-value=9.8e-09  Score=93.68  Aligned_cols=239  Identities=15%  Similarity=0.101  Sum_probs=130.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhccceeccc------cccCeEee-chhHHHHHHHHhhcccceEEecCCccccCcCCCCCCcc
Q 016966           14 KMEAARNRVHALVRTLKASCMLLDHES------EKEELFSM-HDVVRHVAISIASTKRNVFTATNEQVDGCREWSDGSTI   86 (379)
Q Consensus        14 ~~e~~~~~~~~~~~~L~~~~l~~~~~~------~~~~~~~~-hdl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (379)
                      +.++|...+.+++.+=..||.......      .....+.. .|-      .....+-|...            -.....
T Consensus        45 ~~~~a~~~~~~l~~~k~~kGy~~~~~~~~~~p~~~a~rl~~~~~~------~~~~~~~~~~f------------l~~~~~  106 (362)
T 2ra8_A           45 SAGEAEKAAGKLIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDE------AEEGVNLMDKI------------LKDKKL  106 (362)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCEECCHHHHHHCCCCEEEECCCHHH------HHTTCCHHHHH------------HHCTTG
T ss_pred             CHHHHHHHHHHHHHHHHhcCCccccccCCCCchhhceEEEeecCC------cccHHHHHHHH------------hcCCCc
Confidence            567788888889988888887643221      01122222 110      00000000000            001233


Q ss_pred             CCccEEEEeCCCCC--CC-------C-CCCCCCCccEEEeecCCCCCCCCCCC-cccChhhhhCCCceeEEEecCCC---
Q 016966           87 KHFTSIVLHGIKPN--LL-------P-EVLECPQLELLFIRGGGRDDPWETSP-VTIPDNFFKSMIEVRVVNLTDMI---  152 (379)
Q Consensus        87 ~~l~~L~l~~~~~~--~~-------~-~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~---  152 (379)
                      ..++.|.+......  ..       . ....+++|++|.+..+......-.++ ..-...++..+++|+.|.++++.   
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~  186 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS  186 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence            46778877755432  11       1 12257889999886632211000001 01133556778889999998774   


Q ss_pred             CCccccCCCCCcEEEeecCCCCC--ccccc--CcCCCcEEEeeCC--c------Ccccchhh--cCCCCCCEEeccCCCC
Q 016966          153 LPSSLGLLSNLRTLSLCSCGLPD--ISFVG--YLKKLEILCLRGS--D------IVKLPVEV--GELTWLKLLDLRDCCF  218 (379)
Q Consensus       153 lp~~i~~l~~L~~L~l~~~~l~~--~~~~~--~l~~L~~L~l~~~--~------l~~lp~~~--~~l~~L~~L~l~~~~~  218 (379)
                      ++. +. +++|++|++..|.+..  ...+.  .+++|++|+|+.+  .      +..+...+  ..+++|++|++.+|..
T Consensus       187 l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i  264 (362)
T 2ra8_A          187 IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE  264 (362)
T ss_dssp             CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred             ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence            443 33 7788888888887765  44444  6788888888632  1      11222222  2467888888877665


Q ss_pred             CcccChhh--hCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC
Q 016966          219 LKVIPPNI--LSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS  278 (379)
Q Consensus       219 ~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  278 (379)
                      ....+..+  ...+++|++|+++.|.+.+..      ...+...+..+++|+.|+++.|.++
T Consensus       265 ~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G------~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          265 QNVVVEMFLESDILPQLETMDISAGVLTDEG------ARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             HHHHHHHHHHCSSGGGCSEEECCSSCCBHHH------HHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             chHHHHHHHhCccCCCCCEEECCCCCCChHH------HHHHHhhcccCCcceEEECCCCcCC
Confidence            44333221  135677888888777665432      1122333445677888888776544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.82  E-value=1.2e-07  Score=87.91  Aligned_cols=182  Identities=15%  Similarity=0.105  Sum_probs=101.3

Q ss_pred             CccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCC
Q 016966           88 HFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSN  162 (379)
Q Consensus        88 ~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~  162 (379)
                      +++.+.+.. .+..++.  +..|++|+.+.+..|.        ...++...|. +.+|+.+.+..+-   -...+..+.+
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~--------l~~I~~~aF~-~~~L~~l~lp~~l~~I~~~aF~~~~~  227 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK--------ITKLPASTFV-YAGIEEVLLPVTLKEIGSQAFLKTSQ  227 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC--------CSEECTTTTT-TCCCSEEECCTTCCEECTTTTTTCTT
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCc--------ceEechhhEe-ecccCEEEeCCchheehhhHhhCCCC
Confidence            566676664 4444443  4477788888887643        4456666665 4677777776443   3345666667


Q ss_pred             CcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCC----cccChhhhCCCCCCcE
Q 016966          163 LRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFL----KVIPPNILSKLSHLEE  235 (379)
Q Consensus       163 L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~----~~~~~~~l~~l~~L~~  235 (379)
                      |+.+.+..+ ++.  ...+.. .+|+.+.+. +.++.++. .+..+++|+.+.+.++...    ..++...+..+++|+.
T Consensus       228 L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~  304 (401)
T 4fdw_A          228 LKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLAR  304 (401)
T ss_dssp             CCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCE
T ss_pred             CCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCe
Confidence            777776653 333  233333 566666663 34555543 4556666777666553321    1344444666666666


Q ss_pred             EEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc--cccCCcEEEEE
Q 016966          236 LYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSIY  295 (379)
Q Consensus       236 L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~  295 (379)
                      +.+. +.+...+          ...+..|++|+.+.+.. .+..+....  .+ +|+.+.+.
T Consensus       305 l~l~-~~i~~I~----------~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~  353 (401)
T 4fdw_A          305 FEIP-ESIRILG----------QGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVE  353 (401)
T ss_dssp             ECCC-TTCCEEC----------TTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEEC
T ss_pred             EEeC-CceEEEh----------hhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEc
Confidence            6666 3344332          34556666666666633 344444332  35 66666664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.73  E-value=3.8e-08  Score=89.61  Aligned_cols=99  Identities=19%  Similarity=0.068  Sum_probs=82.9

Q ss_pred             EEEecCC-C---CCccccCCCCCcEEEeec-CCCCC-c-ccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCC
Q 016966          145 VVNLTDM-I---LPSSLGLLSNLRTLSLCS-CGLPD-I-SFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDC  216 (379)
Q Consensus       145 ~L~l~~~-~---lp~~i~~l~~L~~L~l~~-~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~  216 (379)
                      .++.+++ .   +|. +..+.+|++|+|++ |.+.. + ..++.+++|++|+|++|.++.+|+ .+..+++|++|++++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            4577777 4   888 99999999999996 99988 4 679999999999999999998775 6789999999999997


Q ss_pred             CCCcccChhhhCCCCCCcEEEecCCCCcCh
Q 016966          217 CFLKVIPPNILSKLSHLEELYIGRESFVDW  246 (379)
Q Consensus       217 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  246 (379)
                      .. ..+|...+..++ |+.|++.+|.+...
T Consensus        91 ~l-~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           91 AL-ESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             CC-SCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             cc-ceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            65 466666456565 99999999988753

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.69  E-value=5.1e-08  Score=88.74  Aligned_cols=90  Identities=17%  Similarity=0.102  Sum_probs=76.5

Q ss_pred             CcccChhhhhCCCceeEEEecC-CC---CC-ccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccchh
Q 016966          129 PVTIPDNFFKSMIEVRVVNLTD-MI---LP-SSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPVE  201 (379)
Q Consensus       129 ~~~~~~~~~~~l~~L~~L~l~~-~~---lp-~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~  201 (379)
                      ...+|.  +..+.+|++|+|++ |.   +| ..+..|.+|++|+|++|.+..  +..+..+++|++|+|++|.++.+|..
T Consensus        21 l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~   98 (347)
T 2ifg_A           21 LDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK   98 (347)
T ss_dssp             CTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred             CCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence            556777  68899999999996 77   44 679999999999999999998  46789999999999999999999976


Q ss_pred             hcCCCCCCEEeccCCCCCc
Q 016966          202 VGELTWLKLLDLRDCCFLK  220 (379)
Q Consensus       202 ~~~l~~L~~L~l~~~~~~~  220 (379)
                      +.....|++|++.+|....
T Consensus        99 ~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           99 TVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             TTCSCCCCEEECCSSCCCC
T ss_pred             HcccCCceEEEeeCCCccC
Confidence            6555559999999987543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.47  E-value=6.7e-07  Score=81.55  Aligned_cols=82  Identities=16%  Similarity=0.188  Sum_probs=42.6

Q ss_pred             cccCCCCCcEEEeecCCCCC----------c-ccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccCh
Q 016966          156 SLGLLSNLRTLSLCSCGLPD----------I-SFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPP  224 (379)
Q Consensus       156 ~i~~l~~L~~L~l~~~~l~~----------~-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~  224 (379)
                      ++..+++|+.|.+.......          + ..+..+++|+.|+++++.-..++. + .+++|++|.+..|........
T Consensus       134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred             hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHH
Confidence            34566788888776543211          1 223445677777776662223443 2 266677777665543322222


Q ss_pred             hh-hCCCCCCcEEEec
Q 016966          225 NI-LSKLSHLEELYIG  239 (379)
Q Consensus       225 ~~-l~~l~~L~~L~l~  239 (379)
                      .+ ...+|+|++|+++
T Consensus       212 ~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHHSBCTTCCEEEEE
T ss_pred             HHHHccCCCCcEEEEe
Confidence            11 1256667776664

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=98.34  E-value=4.4e-08  Score=94.83  Aligned_cols=61  Identities=7%  Similarity=-0.005  Sum_probs=43.7

Q ss_pred             Cccccc--cccccc---chHHHHHHHHHHHHHHHHHhccceeccccccCeEeechhHHHHHHHHhhcccc
Q 016966            1 MCGMGL--GLFQGV---NKMEAARNRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIASTKRN   65 (379)
Q Consensus         1 ~~Wiae--g~i~~~---~~~e~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~hdl~~d~~~~~~~~~~~   65 (379)
                      ++|+|+  ||++..   .+.+++++    ++++|++|||++....+...+|+|||++||+|++++++++.
T Consensus       408 ~~w~a~~~G~i~~~~~~~~~~~~~~----~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~  473 (549)
T 2a5y_B          408 KLWSCVIPVDICSNEEEQLDDEVAD----RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI  473 (549)
T ss_dssp             HHHHHHSCC-------CCCTHHHHH----HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred             eeeeeeccceeccCCCCCCHHHHHH----HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence            369999  999753   23444433    78888889999987654567899999999999999887654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.31  E-value=7.3e-07  Score=71.86  Aligned_cols=75  Identities=19%  Similarity=0.288  Sum_probs=32.5

Q ss_pred             ceeEEEecCCC----CCccccCCCCCcEEEeecCC-CCC--cccccCc----CCCcEEEeeCC-cCc--ccchhhcCCCC
Q 016966          142 EVRVVNLTDMI----LPSSLGLLSNLRTLSLCSCG-LPD--ISFVGYL----KKLEILCLRGS-DIV--KLPVEVGELTW  207 (379)
Q Consensus       142 ~L~~L~l~~~~----lp~~i~~l~~L~~L~l~~~~-l~~--~~~~~~l----~~L~~L~l~~~-~l~--~lp~~~~~l~~  207 (379)
                      .|+.||+++|.    --..+..+++|++|++++|. +++  ...++.+    ++|++|++++| +++  .+. .+.++++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCTT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCCC
Confidence            45555555554    11123444455555555553 443  3444332    24555555544 243  111 2334444


Q ss_pred             CCEEeccCCC
Q 016966          208 LKLLDLRDCC  217 (379)
Q Consensus       208 L~~L~l~~~~  217 (379)
                      |++|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            4444444444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.27  E-value=5.6e-07  Score=74.02  Aligned_cols=78  Identities=17%  Similarity=0.134  Sum_probs=40.7

Q ss_pred             hhhCCCceeEEEecCC-C--------CCccccCCCCCcEEEeecCCCCC--c----ccccCcCCCcEEEeeCCcCc----
Q 016966          136 FFKSMIEVRVVNLTDM-I--------LPSSLGLLSNLRTLSLCSCGLPD--I----SFVGYLKKLEILCLRGSDIV----  196 (379)
Q Consensus       136 ~~~~l~~L~~L~l~~~-~--------lp~~i~~l~~L~~L~l~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~----  196 (379)
                      .+...+.|+.|+|++| .        +...+...++|++|++++|.+..  .    ..+...++|++|++++|.+.    
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3455666666666666 4        23334445566666666666554  1    22333455666666665554    


Q ss_pred             -ccchhhcCCCCCCEEec
Q 016966          197 -KLPVEVGELTWLKLLDL  213 (379)
Q Consensus       197 -~lp~~~~~l~~L~~L~l  213 (379)
                       .+...+...+.|++|++
T Consensus       111 ~~l~~~L~~n~~L~~L~L  128 (185)
T 1io0_A          111 LALVEALQSNTSLIELRI  128 (185)
T ss_dssp             HHHHHGGGGCSSCCEEEC
T ss_pred             HHHHHHHHhCCCceEEEe
Confidence             13334444445555555

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.24  E-value=6.7e-07  Score=73.54  Aligned_cols=117  Identities=14%  Similarity=0.086  Sum_probs=80.4

Q ss_pred             ccccCCCCCcEEEeecC-CCCC--c----ccccCcCCCcEEEeeCCcCc-----ccchhhcCCCCCCEEeccCCCCCcc-
Q 016966          155 SSLGLLSNLRTLSLCSC-GLPD--I----SFVGYLKKLEILCLRGSDIV-----KLPVEVGELTWLKLLDLRDCCFLKV-  221 (379)
Q Consensus       155 ~~i~~l~~L~~L~l~~~-~l~~--~----~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~-  221 (379)
                      ..+...+.|++|++++| .+..  .    ..+...++|++|++++|.+.     .+...+...+.|++|++++|..... 
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            34566788888888888 7765  2    44556678888888888776     3444566667888888888765443 


Q ss_pred             ---cChhhhCCCCCCcEEEe--cCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC
Q 016966          222 ---IPPNILSKLSHLEELYI--GRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS  278 (379)
Q Consensus       222 ---~~~~~l~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  278 (379)
                         +... +...++|++|++  ++|.+....      ...+...+...++|++|++++|.+.
T Consensus       110 ~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g------~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          110 ILALVEA-LQSNTSLIELRIDNQSQPLGNNV------EMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHG-GGGCSSCCEEECCCCSSCCCHHH------HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHH-HHhCCCceEEEecCCCCCCCHHH------HHHHHHHHHhCCCcCEEeccCCCCC
Confidence               2222 566678888888  777776532      2234556666778888888887654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.08  E-value=6e-06  Score=66.49  Aligned_cols=90  Identities=12%  Similarity=0.115  Sum_probs=56.5

Q ss_pred             CCccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCC-cCcc-cchhhcCC----CCCCEEeccCCCCCcccCh
Q 016966          153 LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGS-DIVK-LPVEVGEL----TWLKLLDLRDCCFLKVIPP  224 (379)
Q Consensus       153 lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~-~l~~-lp~~~~~l----~~L~~L~l~~~~~~~~~~~  224 (379)
                      +|.....-.+|++|++++|.+++  ...+..+++|++|++++| .++. --..+..+    ++|++|++++|..+.+...
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence            55433233468888888888766  677777888888888887 4551 11234443    3577777777765544333


Q ss_pred             hhhCCCCCCcEEEecCCC
Q 016966          225 NILSKLSHLEELYIGRES  242 (379)
Q Consensus       225 ~~l~~l~~L~~L~l~~~~  242 (379)
                      ..+.++++|++|++++|.
T Consensus       133 ~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          133 IALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHGGGCTTCCEEEEESCT
T ss_pred             HHHhcCCCCCEEECCCCC
Confidence            335667777777777665

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.03  E-value=4.9e-05  Score=70.19  Aligned_cols=32  Identities=13%  Similarity=0.296  Sum_probs=17.2

Q ss_pred             cccceeeccccccccccccccccccccCCCCcEEEec
Q 016966          330 QRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLE  366 (379)
Q Consensus       330 ~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~  366 (379)
                      .+|+.+.+..+    ++.++...+. ++++|+.+.+.
T Consensus       343 ~~L~~i~lp~~----l~~I~~~aF~-~C~~L~~i~lp  374 (394)
T 4fs7_A          343 TSLSNINFPLS----LRKIGANAFQ-GCINLKKVELP  374 (394)
T ss_dssp             TTCCEECCCTT----CCEECTTTBT-TCTTCCEEEEE
T ss_pred             CCCCEEEECcc----ccEehHHHhh-CCCCCCEEEEC
Confidence            55666665432    3455544442 46666666664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.99  E-value=1.8e-06  Score=74.85  Aligned_cols=38  Identities=29%  Similarity=0.413  Sum_probs=17.1

Q ss_pred             CCCCcEEEeecCCCCCc----ccccCcCCCcEEEeeCCcCcc
Q 016966          160 LSNLRTLSLCSCGLPDI----SFVGYLKKLEILCLRGSDIVK  197 (379)
Q Consensus       160 l~~L~~L~l~~~~l~~~----~~~~~l~~L~~L~l~~~~l~~  197 (379)
                      +++|+.|+|++|.+...    ..+..+++|++|+|++|.++.
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~  210 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS  210 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence            44455555555544441    222344445555555444443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.79  E-value=1.7e-05  Score=68.77  Aligned_cols=76  Identities=25%  Similarity=0.260  Sum_probs=59.3

Q ss_pred             hhCCCceeEEEecCCC------CCccccCCCCCcEEEeecCCCCCcccccCcC--CCcEEEeeCCcCc-ccc-------h
Q 016966          137 FKSMIEVRVVNLTDMI------LPSSLGLLSNLRTLSLCSCGLPDISFVGYLK--KLEILCLRGSDIV-KLP-------V  200 (379)
Q Consensus       137 ~~~l~~L~~L~l~~~~------lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~--~L~~L~l~~~~l~-~lp-------~  200 (379)
                      ..++++|+.|+|++|.      +|..+..+++|++|+|++|.+.....+..+.  +|++|++++|.+. .+|       .
T Consensus       166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            3568899999999998      3355668999999999999998855555555  8999999999886 344       2


Q ss_pred             hhcCCCCCCEEe
Q 016966          201 EVGELTWLKLLD  212 (379)
Q Consensus       201 ~~~~l~~L~~L~  212 (379)
                      .+..+|+|+.|+
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            356788888875

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.75  E-value=0.00019  Score=66.20  Aligned_cols=57  Identities=12%  Similarity=0.206  Sum_probs=35.8

Q ss_pred             CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCCcEEEeec
Q 016966          105 VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCS  170 (379)
Q Consensus       105 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~  170 (379)
                      +..+.+|+++.+..+         ...++...|..+.+|+.+.+..+-   ....+.++..|+.+.+..
T Consensus       158 F~~c~~L~~i~l~~~---------~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~  217 (394)
T 4fs7_A          158 FATCESLEYVSLPDS---------METLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPN  217 (394)
T ss_dssp             TTTCTTCCEEECCTT---------CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCT
T ss_pred             hcccCCCcEEecCCc---------cceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCC
Confidence            447788888887652         445666777778888887776554   233445555555555443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.73  E-value=0.0012  Score=60.75  Aligned_cols=121  Identities=14%  Similarity=0.115  Sum_probs=64.1

Q ss_pred             CccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCC
Q 016966           88 HFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSN  162 (379)
Q Consensus        88 ~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~  162 (379)
                      .++.+.+-.+ +..+..  +..+.+|+++.+..|.-..     +..+....|..+..|+.+.+..+-   -...+..+.+
T Consensus        65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~-----l~~Ig~~aF~~c~~L~~i~~~~~~~~I~~~aF~~c~~  138 (394)
T 4gt6_A           65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSC-----VKKIGRQAFMFCSELTDIPILDSVTEIDSEAFHHCEE  138 (394)
T ss_dssp             CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCC-----CCEECTTTTTTCTTCCBCGGGTTCSEECTTTTTTCTT
T ss_pred             cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCe-----eeEechhhchhcccceeeccCCccceehhhhhhhhcc
Confidence            3666666543 444443  4467778887776532111     445566666666666666554443   2234556666


Q ss_pred             CcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccC
Q 016966          163 LRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRD  215 (379)
Q Consensus       163 L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~  215 (379)
                      |+.+.+..+...- ...+..+.+|+.+.+..+ +..+........+|+.+.+..
T Consensus       139 L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~  191 (394)
T 4gt6_A          139 LDTVTIPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPA  191 (394)
T ss_dssp             CCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECT
T ss_pred             cccccccceeeeecccceecccccccccccce-eeEeccccccccceeEEEECC
Confidence            7777665432111 244555666766666543 344443333334566665543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.49  E-value=0.0028  Score=58.33  Aligned_cols=79  Identities=14%  Similarity=0.176  Sum_probs=48.6

Q ss_pred             CCccCCccEEEEeCCC---CCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CC
Q 016966           83 GSTIKHFTSIVLHGIK---PNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LP  154 (379)
Q Consensus        83 ~~~~~~l~~L~l~~~~---~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp  154 (379)
                      +..+.+++.+.+..+.   +..++.  +..+.+|+.+.+..+         ...+....|..+.+|+.+.+....   ..
T Consensus        83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~---------~~~I~~~aF~~c~~L~~i~lp~~~~~I~~  153 (394)
T 4gt6_A           83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS---------VTEIDSEAFHHCEELDTVTIPEGVTSVAD  153 (394)
T ss_dssp             TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT---------CSEECTTTTTTCTTCCEEECCTTCCEECT
T ss_pred             hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc---------cceehhhhhhhhcccccccccceeeeecc
Confidence            3456788888887653   333433  336677777665442         555666667777888888776544   23


Q ss_pred             ccccCCCCCcEEEeec
Q 016966          155 SSLGLLSNLRTLSLCS  170 (379)
Q Consensus       155 ~~i~~l~~L~~L~l~~  170 (379)
                      ..+..+..|+.+.+..
T Consensus       154 ~~F~~c~~L~~i~~~~  169 (394)
T 4gt6_A          154 GMFSYCYSLHTVTLPD  169 (394)
T ss_dssp             TTTTTCTTCCEEECCT
T ss_pred             cceecccccccccccc
Confidence            3455566666666654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.52  E-value=0.034  Score=50.56  Aligned_cols=126  Identities=9%  Similarity=0.136  Sum_probs=61.2

Q ss_pred             ChhhhhCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccch-hhcCCC
Q 016966          133 PDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPV-EVGELT  206 (379)
Q Consensus       133 ~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~  206 (379)
                      ....|..+.+|+.+.+...-   ....+..+..|+.+.+..+ ++.  ...+..+.+|+.+.+.. .+..++. .+..++
T Consensus       209 ~~~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~  286 (379)
T 4h09_A          209 TAYGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCS  286 (379)
T ss_dssp             CTTTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCT
T ss_pred             eecccccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccc
Confidence            33344555556655554433   2233445555665555443 222  23444555566665543 2444443 344556


Q ss_pred             CCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEe
Q 016966          207 WLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEV  272 (379)
Q Consensus       207 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  272 (379)
                      +|+.+.+.++ .+..++...+.++.+|+.+.+. +.+...+          ..++..|++|+.+.+
T Consensus       287 ~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp-~~l~~I~----------~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          287 NLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLP-TALKTIQ----------VYAFKNCKALSTISY  340 (379)
T ss_dssp             TCCEEEECCT-TCCEECTTTTTTCTTCCEEECC-TTCCEEC----------TTTTTTCTTCCCCCC
T ss_pred             cccccccccc-ccceehhhhhcCCCCCCEEEcC-ccccEEH----------HHHhhCCCCCCEEEE
Confidence            6666665542 2344444445566666666654 2233221          234555566665555

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.21  E-value=0.12  Score=46.98  Aligned_cols=100  Identities=15%  Similarity=0.124  Sum_probs=54.6

Q ss_pred             CcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchH
Q 016966          181 YLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLE  259 (379)
Q Consensus       181 ~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  259 (379)
                      ...+|+.+.+..+ +..+.. .+..+..|+.+.+..+  +..+....+..+.+|+.+.+.. .+...+          ..
T Consensus       215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~-~i~~i~----------~~  280 (379)
T 4h09_A          215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA-KVKTVP----------YL  280 (379)
T ss_dssp             TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC-CCSEEC----------TT
T ss_pred             cccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccc-cceecc----------cc
Confidence            3445555555332 333332 3445666666666542  3444444456666677766652 233221          34


Q ss_pred             hhcCCCCCcEEEeeccCCCCCCccc--cccCCcEEEE
Q 016966          260 ELKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSI  294 (379)
Q Consensus       260 ~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l  294 (379)
                      .+..+++|+.+.+..+.++.++...  .|.+|+.+.+
T Consensus       281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l  317 (379)
T 4h09_A          281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL  317 (379)
T ss_dssp             TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence            5566777777777666666665544  4677777665

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.92  E-value=0.0099  Score=48.60  Aligned_cols=59  Identities=15%  Similarity=0.257  Sum_probs=28.6

Q ss_pred             hCCCceeEEEecCC-C--------CCccccCCCCCcEEEeecCCCCC--c----ccccCcCCCcEEEeeCCcCc
Q 016966          138 KSMIEVRVVNLTDM-I--------LPSSLGLLSNLRTLSLCSCGLPD--I----SFVGYLKKLEILCLRGSDIV  196 (379)
Q Consensus       138 ~~l~~L~~L~l~~~-~--------lp~~i~~l~~L~~L~l~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~  196 (379)
                      .+-+.|+.|+|+++ .        +.+.+..-..|+.|+|++|.+.+  -    ..+..-+.|++|+|++|.+.
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            34455666666654 2        22234444455555555555543  1    22223345555555555544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.67  E-value=0.011  Score=48.26  Aligned_cols=117  Identities=10%  Similarity=0.064  Sum_probs=71.1

Q ss_pred             ccCCCCCcEEEeecC-CCCC------cccccCcCCCcEEEeeCCcCc-----ccchhhcCCCCCCEEeccCCCCCcccCh
Q 016966          157 LGLLSNLRTLSLCSC-GLPD------ISFVGYLKKLEILCLRGSDIV-----KLPVEVGELTWLKLLDLRDCCFLKVIPP  224 (379)
Q Consensus       157 i~~l~~L~~L~l~~~-~l~~------~~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~  224 (379)
                      +.+-+.|++|+|+++ .+..      -..+..-+.|+.|+|++|.+.     .+...+..=+.|++|+++.|.....-..
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            345567888888875 6654      144555678888888888776     3444555556788888888765443222


Q ss_pred             h---hhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccC
Q 016966          225 N---ILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRD  276 (379)
Q Consensus       225 ~---~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  276 (379)
                      .   .+..-+.|+.|+++++......  . .....+...+..-+.|+.|+++.+.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig--~-~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLG--N-QVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCC--H-HHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcC--H-HHHHHHHHHHHhCCCcCeEeccCCC
Confidence            1   1344456888888754321111  0 0112345566666788888887654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.64  E-value=0.058  Score=40.84  Aligned_cols=55  Identities=20%  Similarity=0.297  Sum_probs=33.4

Q ss_pred             EEEeeCCcCc--ccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCc
Q 016966          187 ILCLRGSDIV--KLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFV  244 (379)
Q Consensus       187 ~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  244 (379)
                      +++.++.+++  .+|..+.  ++|++|++++|. +..++...+..+++|+.|++.+|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence            5566666665  6664322  356777777644 45555555666777777777777654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=94.19  E-value=0.033  Score=58.94  Aligned_cols=44  Identities=11%  Similarity=0.234  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHhccceeccccccCeEeechhHHHHHHHHhhcc
Q 016966           20 NRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIASTK   63 (379)
Q Consensus        20 ~~~~~~~~~L~~~~l~~~~~~~~~~~~~~hdl~~d~~~~~~~~~   63 (379)
                      +.+.+++++|+++||++....++..+|+|||++|++++..+.++
T Consensus       409 ~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          409 EEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             HHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence            44566888899999999776655667999999999999987755

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.16  E-value=0.084  Score=39.96  Aligned_cols=52  Identities=19%  Similarity=0.211  Sum_probs=35.8

Q ss_pred             EEEeecCCCC--C-cccccCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCCCC
Q 016966          165 TLSLCSCGLP--D-ISFVGYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCCF  218 (379)
Q Consensus       165 ~L~l~~~~l~--~-~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~  218 (379)
                      .++.++..++  . |..+  ..+|++|+|++|.++.+|.. +..+++|++|++.+|..
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            5666666666  4 4332  23688888888888888764 56778888888887653

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=89.81  E-value=0.17  Score=51.82  Aligned_cols=34  Identities=18%  Similarity=0.283  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHhccceeccccccCeEeechhHHHHHH
Q 016966           22 VHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAI   57 (379)
Q Consensus        22 ~~~~~~~L~~~~l~~~~~~~~~~~~~~hdl~~d~~~   57 (379)
                      +.+++++|+++|||+...  ....|+|||++++++.
T Consensus       404 Ae~~L~eLvdRSLLq~d~--~~~rYrMHDLllELr~  437 (1221)
T 1vt4_I          404 VMVVVNKLHKYSLVEKQP--KESTISIPSIYLELKV  437 (1221)
T ss_dssp             HHHHHHHHHTSSSSSBCS--SSSEEBCCCHHHHHHH
T ss_pred             HHHHHHHHHhhCCEEEeC--CCCEEEehHHHHHHhc
Confidence            455788899999999753  2578999999999663

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=86.35  E-value=0.65  Score=44.79  Aligned_cols=40  Identities=13%  Similarity=0.213  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHhccceeccccccCeEeechhHHHHHHHHh
Q 016966           21 RVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIA   60 (379)
Q Consensus        21 ~~~~~~~~L~~~~l~~~~~~~~~~~~~~hdl~~d~~~~~~   60 (379)
                      .+.+++++|+++||++....+....|+||+++|+++....
T Consensus       410 ~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~  449 (591)
T 1z6t_A          410 EVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN  449 (591)
T ss_dssp             HHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence            4566888999999998665544568999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	379
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.2 bits (116), Expect = 4e-07
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 160 LSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFL 219
           L NL  L+L    + DIS V  L KL+ L    + +  +   +  LT +  L        
Sbjct: 306 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQIS 364

Query: 220 KVIPPNILSKLSHLEELYI 238
            + P   L+ L+ + +L +
Sbjct: 365 DLTP---LANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 8e-06
 Identities = 31/190 (16%), Positives = 59/190 (31%), Gaps = 36/190 (18%)

Query: 123 DPWETSPVTIPDNFFKSMIEVRVVNLTDMILPSSLGLLSNLRTLSLCSCGLPDISFVGYL 182
                    I      + ++   +N   +    +L  L+NL  L L +  + +++ +  L
Sbjct: 203 IATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGL 262

Query: 183 KKLEILCLRGSDIVKLPVEVG---------------------ELTWLKLLDLRDCCFLKV 221
            KL  L L  + I  +    G                      L  L  L L       +
Sbjct: 263 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 322

Query: 222 IPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLP 281
            P   +S L+ L+ L+                  + +  L +L N+  L      +S L 
Sbjct: 323 SP---VSSLTKLQRLFFANNKV------------SDVSSLANLTNINWLSAGHNQISDLT 367

Query: 282 RGLLLEKLER 291
               L ++ +
Sbjct: 368 PLANLTRITQ 377

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 8e-06
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 147 NLTDMILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELT 206
           N++D+     +  L+ L+ L   +  + D+S +  L  +  L    + I  L   +  LT
Sbjct: 318 NISDIS---PVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLT-PLANLT 373

Query: 207 WLKLLDLRD 215
            +  L L D
Sbjct: 374 RITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 2/88 (2%)

Query: 131 TIPDNFFKSMIEVRVVNLTDMILPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCL 190
              D      ++  V+  T++    S   L  + TL     G+  I  V YL  L  +  
Sbjct: 15  IFTDTALAEKMK-TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINF 73

Query: 191 RGSDIVKLPVEVGELTWLKLLDLRDCCF 218
             + +  +   +  LT L  + + +   
Sbjct: 74  SNNQLTDIT-PLKNLTKLVDILMNNNQI 100

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 45.1 bits (105), Expect = 3e-06
 Identities = 35/178 (19%), Positives = 59/178 (33%), Gaps = 34/178 (19%)

Query: 127 TSPVTIPDNFFK-------SMIEVRVVNLTDMI-----LPSSLGLLSNLRTLSLCSCGLP 174
               TI D              E   V L  MI     + ++L  L   + L+L +  + 
Sbjct: 2   AKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE 61

Query: 175 DISFVGYLKKLEILCLRGSDIVKLPVEVGELT----------------------WLKLLD 212
            IS +  ++ L IL L  + I K+                               L++L 
Sbjct: 62  KISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY 121

Query: 213 LRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSL 270
           + +         + L+ L  LE+L +      +  +E        +E +K LPNL  L
Sbjct: 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 11/130 (8%)

Query: 144 RVVNLTDMIL--PSSLGLLSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPV 200
           RV++L    L     L  L  +  L L    L      +  L+ LE+L    + +  +  
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD- 59

Query: 201 EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEE 260
            V  L  L+ L L +    +      L     L  L +   S    E   E +       
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL------- 112

Query: 261 LKHLPNLTSL 270
            + LP+++S+
Sbjct: 113 AEMLPSVSSI 122

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 13/112 (11%)

Query: 164 RTLSLCSCGLPDISFVGYLKKLEILCLR--GSDIVKLPVEVGELTWLKLLDLRDCCFLKV 221
           +TL L    L      G L    ++  R   S + +   E      ++ +DL +      
Sbjct: 3   QTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 222 IPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVH 273
               ILS+ S L+ L +      D            +  L    NL  L + 
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSD----------PIVNTLAKNSNLVRLNLS 103

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 7/74 (9%)

Query: 160 LSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFL 219
             +L  L++ +  L ++       +LE L    + + ++P        LK L +      
Sbjct: 283 PPSLEELNVSNNKLIELP--ALPPRLERLIASFNHLAEVP---ELPQNLKQLHVEYNPLR 337

Query: 220 KVIPPNILSKLSHL 233
           +   P+I   +  L
Sbjct: 338 EF--PDIPESVEDL 349

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.004
 Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 12/115 (10%)

Query: 147 NLTDMILPSSLGLLSNLRTLSLCSCGLPDI------SFVGYLKKLEILCLRGSDIVKLPV 200
            L+D      L LL   + + L  CGL +       S +     L  L LR +++  + V
Sbjct: 13  ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV 72

Query: 201 EV------GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEE 249
                        ++ L L++CC        + S L  L  L     S     + 
Sbjct: 73  HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 127

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	379
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.81
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.8
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.79
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.75
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.75
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.74
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.73
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.61
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.54
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.52
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.46
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.42
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.42
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.37
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.36
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.34
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.25
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.23
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.17
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.11
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.03
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.0
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.93
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.83
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.11
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.82
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.81
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.49
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.46
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.14
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.0

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=1.3e-18  Score=159.17  Aligned_cols=173  Identities=19%  Similarity=0.201  Sum_probs=84.3

Q ss_pred             ccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccch
Q 016966          179 VGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASL  258 (379)
Q Consensus       179 ~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  258 (379)
                      ...+++++.++++++.++.++. ...+++|++|++++|.. ..++.  +..+++|+.|++.+|.+.+.            
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l-~~~~~--l~~l~~L~~L~l~~n~l~~~------------  256 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQL-KDIGT--LASLTNLTDLDLANNQISNL------------  256 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCC-CCCGG--GGGCTTCSEEECCSSCCCCC------------
T ss_pred             cccccccceeeccCCccCCCCc-ccccCCCCEEECCCCCC-CCcch--hhcccccchhccccCccCCC------------
Confidence            3344556666666666555542 34455666666666442 23332  45566666666666655542            


Q ss_pred             HhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeecccc-cCcccccceEEEEe-CCcccchHHHHHHhcccceee
Q 016966          259 EELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFS-RKTGIWCRQFRVEL-NNKICLKDSLIVQLQRIEDLE  336 (379)
Q Consensus       259 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~l-~~~~~~~~~~~~~~~~L~~L~  336 (379)
                      ..++.+++|+.|+++++.+..++....++.++.+.+..+.... ......++...|++ .+.......+.. +++|+.|+
T Consensus       257 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~-l~~L~~L~  335 (384)
T d2omza2         257 APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSS-LTKLQRLF  335 (384)
T ss_dssp             GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGG-CTTCCEEE
T ss_pred             CcccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCccccc-CCCCCEEE
Confidence            2355556666666666655555443344555555443222111 11122223334555 222221112333 36666666


Q ss_pred             ccccccccccccccccccccCCCCcEEEecCCCCccCC
Q 016966          337 LSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNP  374 (379)
Q Consensus       337 l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  374 (379)
                      +++|.   ++.++. +  .++++|++|++++|+....+
T Consensus       336 L~~n~---l~~l~~-l--~~l~~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         336 FANNK---VSDVSS-L--ANLTNINWLSAGHNQISDLT  367 (384)
T ss_dssp             CCSSC---CCCCGG-G--GGCTTCCEEECCSSCCCBCG
T ss_pred             CCCCC---CCCChh-H--cCCCCCCEEECCCCcCCCCh
Confidence            66665   444442 2  23566666666666555443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=3.4e-18  Score=156.35  Aligned_cols=259  Identities=21%  Similarity=0.265  Sum_probs=202.6

Q ss_pred             CcCCCCCCccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----
Q 016966           77 CREWSDGSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----  152 (379)
Q Consensus        77 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----  152 (379)
                      +........++++++|++++|.++.++++..+++|+.|++++|.+.+        +++  +.++++|+.|+++++.    
T Consensus        56 I~~l~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~--------i~~--l~~l~~L~~L~~~~~~~~~~  125 (384)
T d2omza2          56 IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--------ITP--LANLTNLTGLTLFNNQITDI  125 (384)
T ss_dssp             CCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--------CGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             CCCccccccCCCCCEEeCcCCcCCCCccccCCccccccccccccccc--------ccc--cccccccccccccccccccc
Confidence            44445566788999999999999888888899999999999977643        333  5788999999887654    


Q ss_pred             ---------------------------------------------------------------CCccccCCCCCcEEEee
Q 016966          153 ---------------------------------------------------------------LPSSLGLLSNLRTLSLC  169 (379)
Q Consensus       153 ---------------------------------------------------------------lp~~i~~l~~L~~L~l~  169 (379)
                                                                                     .......++++++++++
T Consensus       126 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~  205 (384)
T d2omza2         126 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIAT  205 (384)
T ss_dssp             GGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeecc
Confidence                                                                           00124456788899999


Q ss_pred             cCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhh
Q 016966          170 SCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEE  249 (379)
Q Consensus       170 ~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  249 (379)
                      ++.++.......+++|++|++++|.++.++ .+..+++|++|++++|... .++.  ++.+++|++|+++++.+..    
T Consensus       206 ~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~L~l~~~~l~~----  277 (384)
T d2omza2         206 NNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQIS-NLAP--LSGLTKLTELKLGANQISN----  277 (384)
T ss_dssp             SSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCCC----
T ss_pred             CCccCCCCcccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccC-CCCc--ccccccCCEeeccCcccCC----
Confidence            998888545677889999999999998887 6889999999999997754 4443  6889999999999988875    


Q ss_pred             hhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeeccccc-CcccccceEEEEe-CCcccchHHHHH
Q 016966          250 VEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSR-KTGIWCRQFRVEL-NNKICLKDSLIV  327 (379)
Q Consensus       250 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~l-~~~~~~~~~~~~  327 (379)
                              ...+..++.++.+.+..+.+..++....+++++.++++.+..... .+..+++...|++ ++.....+.+..
T Consensus       278 --------~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~~l~~  349 (384)
T d2omza2         278 --------ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLAN  349 (384)
T ss_dssp             --------CGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGGG
T ss_pred             --------CCccccccccccccccccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCChhHcC
Confidence                    335778889999999999988877655789999999976655432 2456677779999 555554445777


Q ss_pred             HhcccceeeccccccccccccccccccccCCCCcEEEecCC
Q 016966          328 QLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGS  368 (379)
Q Consensus       328 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c  368 (379)
                      + ++|++|++++|.   ++.++. +  .++++|+.|+|++|
T Consensus       350 l-~~L~~L~l~~N~---l~~l~~-l--~~l~~L~~L~L~~N  383 (384)
T d2omza2         350 L-TNINWLSAGHNQ---ISDLTP-L--ANLTRITQLGLNDQ  383 (384)
T ss_dssp             C-TTCCEEECCSSC---CCBCGG-G--TTCTTCSEEECCCE
T ss_pred             C-CCCCEEECCCCc---CCCChh-h--ccCCCCCEeeCCCC
Confidence            4 999999999997   777654 3  35999999999886

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.79  E-value=1.1e-19  Score=162.05  Aligned_cols=240  Identities=15%  Similarity=0.195  Sum_probs=121.8

Q ss_pred             CccEEEEeCCCCC---CCCC-CCCCCCccEEEeec-CCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCcccc
Q 016966           88 HFTSIVLHGIKPN---LLPE-VLECPQLELLFIRG-GGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLG  158 (379)
Q Consensus        88 ~l~~L~l~~~~~~---~~~~-~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~  158 (379)
                      +++.|+++++.+.   .+|. +..+++|+.|++++ |.+       .+.+|+. |.++++|++|++++|.    .+..+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l-------~g~iP~~-i~~L~~L~~L~Ls~N~l~~~~~~~~~  122 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL-------VGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLS  122 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE-------ESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccc-------ccccccc-cccccccchhhhcccccccccccccc
Confidence            4555555555442   2332 22455555555543 222       2234433 2445555555555544    333344


Q ss_pred             CCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCc-ccchhhcCCCCC-CEEeccCCCCCcccChhhhCCCCCCc
Q 016966          159 LLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIV-KLPVEVGELTWL-KLLDLRDCCFLKVIPPNILSKLSHLE  234 (379)
Q Consensus       159 ~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L-~~L~l~~~~~~~~~~~~~l~~l~~L~  234 (379)
                      .+.+|++++++.|.+..  |..++++++|+++++++|.+. .+|..+..+.++ +.+.+++|...+..|.. ++.+..+ 
T Consensus       123 ~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~-~~~l~~~-  200 (313)
T d1ogqa_         123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLNLA-  200 (313)
T ss_dssp             GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCCCS-
T ss_pred             chhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccc-ccccccc-
Confidence            45555555555544333  444555555555555555444 444444444443 44444444433333333 3333322 


Q ss_pred             EEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc-cccCCcEEEEEeecccccCcccccceEEE
Q 016966          235 ELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL-LLEKLERYSIYIRRYFSRKTGIWCRQFRV  313 (379)
Q Consensus       235 ~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  313 (379)
                      .+++..+.....          .+..+..+++++.+++..+.+...+..+ .+++|+.|+++.+...             
T Consensus       201 ~l~l~~~~~~~~----------~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~-------------  257 (313)
T d1ogqa_         201 FVDLSRNMLEGD----------ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY-------------  257 (313)
T ss_dssp             EEECCSSEEEEC----------CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCE-------------
T ss_pred             cccccccccccc----------ccccccccccccccccccccccccccccccccccccccCccCeec-------------
Confidence            344443332221          2344445555555555555554322222 3455555555322222             


Q ss_pred             EeCCcccchHHHHHHhcccceeecccccccccc-ccccccccccCCCCcEEEecCCCCcc
Q 016966          314 ELNNKICLKDSLIVQLQRIEDLELSELQEQDVD-YFRNELVKVGSSHLKRLRLEGSDLAL  372 (379)
Q Consensus       314 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~~~~~~L~~L~l~~c~~l~  372 (379)
                           ..+|+++..+ ++|++|++++|.   ++ .+|..   ..+++|+.+++.+|+.+.
T Consensus       258 -----g~iP~~l~~L-~~L~~L~Ls~N~---l~g~iP~~---~~L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         258 -----GTLPQGLTQL-KFLHSLNVSFNN---LCGEIPQG---GNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             -----ECCCGGGGGC-TTCCEEECCSSE---EEEECCCS---TTGGGSCGGGTCSSSEEE
T ss_pred             -----ccCChHHhCC-CCCCEEECcCCc---ccccCCCc---ccCCCCCHHHhCCCcccc
Confidence                 1477778775 999999999998   44 67752   347899999999998765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.8e-17  Score=143.94  Aligned_cols=190  Identities=21%  Similarity=0.213  Sum_probs=155.9

Q ss_pred             CccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCCc
Q 016966           88 HFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLR  164 (379)
Q Consensus        88 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~  164 (379)
                      ...+++.+++++..+|... .++++.|++++|.        +..++...|.++++|++|++++|.   +| .++.+++|+
T Consensus        11 ~~~~v~C~~~~L~~iP~~l-p~~l~~L~Ls~N~--------i~~l~~~~f~~l~~L~~L~L~~N~l~~l~-~~~~l~~L~   80 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPDL-PKDTTILHLSENL--------LYTFSLATLMPYTRLTQLNLDRAELTKLQ-VDGTLPVLG   80 (266)
T ss_dssp             TCCEEECTTSCCSSCCSCC-CTTCCEEECTTSC--------CSEEEGGGGTTCTTCCEEECTTSCCCEEE-CCSCCTTCC
T ss_pred             CCeEEEccCCCCCeeCcCc-CcCCCEEECcCCc--------CCCcCHHHhhccccccccccccccccccc-ccccccccc
Confidence            3455666677777777533 2579999999965        445777778999999999999998   44 457899999


Q ss_pred             EEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCC
Q 016966          165 TLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRES  242 (379)
Q Consensus       165 ~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  242 (379)
                      +|++++|.+.. +..+..+++|++|+++++.+..++. .+..+.++++|++++|. ...++...+..+++|+.|++++|.
T Consensus        81 ~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~-l~~l~~~~~~~l~~l~~l~l~~N~  159 (266)
T d1p9ag_          81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNN  159 (266)
T ss_dssp             EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             ccccccccccccccccccccccccccccccccceeeccccccccccccccccccc-cceeccccccccccchhccccccc
Confidence            99999999988 7888899999999999998887664 56788999999999965 456666667889999999999999


Q ss_pred             CcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc-cccCCcEEEEEeec
Q 016966          243 FVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL-LLEKLERYSIYIRR  298 (379)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~  298 (379)
                      +....          +..+..+++|++|++++|.++.+|..+ .+++|+.|+++.+.
T Consensus       160 l~~~~----------~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         160 LTELP----------AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CSCCC----------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ccccC----------ccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCC
Confidence            98753          566888999999999999999999877 68899999986543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.9e-17  Score=143.75  Aligned_cols=192  Identities=19%  Similarity=0.247  Sum_probs=141.7

Q ss_pred             CCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CC-ccccCCCCCcEEEeecCCCCCcccccCcC
Q 016966          108 CPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LP-SSLGLLSNLRTLSLCSCGLPDISFVGYLK  183 (379)
Q Consensus       108 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp-~~i~~l~~L~~L~l~~~~l~~~~~~~~l~  183 (379)
                      ...+.+.+.+++.        .+.+|+.+.   +++++|+|++|.   +| ..+..+++|++|++++|.++.++.++.++
T Consensus         9 ~~~~~~v~C~~~~--------L~~iP~~lp---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~   77 (266)
T d1p9ag_           9 VASHLEVNCDKRN--------LTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP   77 (266)
T ss_dssp             STTCCEEECTTSC--------CSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCT
T ss_pred             cCCCeEEEccCCC--------CCeeCcCcC---cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccccccc
Confidence            3444455555533        445666542   578999999998   44 56888999999999999988855567889


Q ss_pred             CCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcC
Q 016966          184 KLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKH  263 (379)
Q Consensus       184 ~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~  263 (379)
                      +|++|++++|+++..+..+..+++|+.|+++++.... ++...+..+.+++.|.+.+|.+....          ...+..
T Consensus        78 ~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~L~l~~n~l~~l~----------~~~~~~  146 (266)
T d1p9ag_          78 VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLP----------PGLLTP  146 (266)
T ss_dssp             TCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCC-CCSSTTTTCTTCCEEECTTSCCCCCC----------TTTTTT
T ss_pred             cccccccccccccccccccccccccccccccccccce-eeccccccccccccccccccccceec----------cccccc
Confidence            9999999999998888888899999999999866544 44344688899999999988887653          456677


Q ss_pred             CCCCcEEEeeccCCCCCCccc--cccCCcEEEEEeecccccCcccccceEEEEeCCcccchHHHHHHhcccceeeccccc
Q 016966          264 LPNLTSLEVHVRDVSSLPRGL--LLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQ  341 (379)
Q Consensus       264 l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  341 (379)
                      +++|+.+++++|+++.++...  .+++|+.|+++.+...                   .+|+++.. +++|+.|+|.+|+
T Consensus       147 l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-------------------~lp~~~~~-~~~L~~L~L~~Np  206 (266)
T d1p9ag_         147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-------------------TIPKGFFG-SHLLPFAFLHGNP  206 (266)
T ss_dssp             CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-------------------CCCTTTTT-TCCCSEEECCSCC
T ss_pred             cccchhcccccccccccCccccccccccceeecccCCCc-------------------ccChhHCC-CCCCCEEEecCCC
Confidence            889999999999988777653  4677777777433332                   34444444 3777778887776

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.74  E-value=5.7e-17  Score=143.64  Aligned_cols=248  Identities=14%  Similarity=0.159  Sum_probs=177.9

Q ss_pred             cCcCCCCCCccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-
Q 016966           76 GCREWSDGSTIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-  152 (379)
Q Consensus        76 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-  152 (379)
                      +++..|. ..++.+++|++++|.+..++.  +..+++|++|++++|.+        ..+++..|..+++|++|++++|. 
T Consensus        21 ~L~~lP~-~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~--------~~i~~~~f~~l~~L~~L~l~~n~l   91 (305)
T d1xkua_          21 GLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI--------SKISPGAFAPLVKLERLYLSKNQL   91 (305)
T ss_dssp             CCCSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC--------CCBCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCccCC-CCCCCCCEEECcCCcCCCcChhHhhccccccccccccccc--------cccchhhhhCCCccCEecccCCcc
Confidence            3444444 345789999999998888875  44888999999988653        34556667889999999999887 


Q ss_pred             --CCccccCCCCCcEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCc---ccchhhcCCCCCCEEeccCCCCCcccChh
Q 016966          153 --LPSSLGLLSNLRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIV---KLPVEVGELTWLKLLDLRDCCFLKVIPPN  225 (379)
Q Consensus       153 --lp~~i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~~  225 (379)
                        +|..  ....++.|.+..+.+.. + ..+.....+..+....+...   ..+..+..+++|+.+++++|.. ..+|. 
T Consensus        92 ~~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l-~~l~~-  167 (305)
T d1xkua_          92 KELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQ-  167 (305)
T ss_dssp             SBCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCS-
T ss_pred             CcCccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCc-cccCc-
Confidence              5543  34578888888888777 3 44556677778887776433   3344667788888888888653 44553 


Q ss_pred             hhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc--cccCCcEEEEEeecccccC
Q 016966          226 ILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSIYIRRYFSRK  303 (379)
Q Consensus       226 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~  303 (379)
                        ...++|++|++.+|.....          .+..+..++.++.|.+++|.+..++...  .+++|+.|+++.+...   
T Consensus       168 --~~~~~L~~L~l~~n~~~~~----------~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~---  232 (305)
T d1xkua_         168 --GLPPSLTELHLDGNKITKV----------DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV---  232 (305)
T ss_dssp             --SCCTTCSEEECTTSCCCEE----------CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS---
T ss_pred             --ccCCccCEEECCCCcCCCC----------ChhHhhccccccccccccccccccccccccccccceeeeccccccc---
Confidence              3467888888888777654          3567788888899999888888665543  5788888887444332   


Q ss_pred             cccccceEEEEeCCcccchHHHHHHhcccceeeccccccccccccccccc-----cccCCCCcEEEecCCCCc
Q 016966          304 TGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELV-----KVGSSHLKRLRLEGSDLA  371 (379)
Q Consensus       304 ~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~-----~~~~~~L~~L~l~~c~~l  371 (379)
                                      .+|+++.. +++|++|++++|.   ++.++...+     ....++|+.|++++|+..
T Consensus       233 ----------------~lp~~l~~-l~~L~~L~Ls~N~---i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         233 ----------------KVPGGLAD-HKYIQVVYLHNNN---ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             ----------------SCCTTTTT-CSSCCEEECCSSC---CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ----------------cccccccc-ccCCCEEECCCCc---cCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence                            35555656 4999999999987   888865433     124678999999999864

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.73  E-value=9e-18  Score=149.46  Aligned_cols=226  Identities=14%  Similarity=0.165  Sum_probs=171.0

Q ss_pred             CCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecC-CC----CCccccCCCCCcEEEeecCCCCC--cccccC
Q 016966          109 PQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTD-MI----LPSSLGLLSNLRTLSLCSCGLPD--ISFVGY  181 (379)
Q Consensus       109 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~----lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~  181 (379)
                      .+++.|++.++.+..     ...+|+.+ .++++|++|++++ +.    +|..+++|++|++|++++|.+..  +..+..
T Consensus        50 ~~v~~L~L~~~~l~g-----~~~lp~~l-~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~  123 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPK-----PYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ  123 (313)
T ss_dssp             CCEEEEEEECCCCSS-----CEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred             EEEEEEECCCCCCCC-----CCCCChHH-hcCccccccccccccccccccccccccccccchhhhccccccccccccccc
Confidence            478999999976643     33567664 7899999999986 44    88899999999999999999887  566888


Q ss_pred             cCCCcEEEeeCCcCc-ccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCC-cEEEecCCCCcChhhhhhcccccchH
Q 016966          182 LKKLEILCLRGSDIV-KLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHL-EELYIGRESFVDWEEEVEGVKNASLE  259 (379)
Q Consensus       182 l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~~~~~~~~~~~~~~~~  259 (379)
                      +.+|+++++++|.+. .+|..+..++.++++++++|...+.+|.. ++.+..+ +.+.+..|.+.+..          +.
T Consensus       124 ~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l~~~~----------~~  192 (313)
T d1ogqa_         124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKI----------PP  192 (313)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEEC----------CG
T ss_pred             hhhhcccccccccccccCchhhccCcccceeeccccccccccccc-cccccccccccccccccccccc----------cc
Confidence            999999999999655 77889999999999999998888888877 5777665 78888888776542          45


Q ss_pred             hhcCCCCCcEEEeeccCCC-CCCccc-cccCCcEEEEEeecccccCcccccceEEEEeCCcccchHHHHHHhcccceeec
Q 016966          260 ELKHLPNLTSLEVHVRDVS-SLPRGL-LLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLEL  337 (379)
Q Consensus       260 ~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l  337 (379)
                      .+..+. ...+++..+... .+|... .+++|+.+++..+...                   ..+..+.. +++|+.|++
T Consensus       193 ~~~~l~-~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~-------------------~~~~~~~~-~~~L~~L~L  251 (313)
T d1ogqa_         193 TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA-------------------FDLGKVGL-SKNLNGLDL  251 (313)
T ss_dssp             GGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC-------------------CBGGGCCC-CTTCCEEEC
T ss_pred             cccccc-cccccccccccccccccccccccccccccccccccc-------------------cccccccc-ccccccccC
Confidence            555554 346777766665 455544 5788888877433332                   11222333 489999999


Q ss_pred             cccccccccccccccccccCCCCcEEEecCCCCccCCCC
Q 016966          338 SELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNPAE  376 (379)
Q Consensus       338 ~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  376 (379)
                      ++|.  ....+|..+..  +++|++|++++|.....+|.
T Consensus       252 s~N~--l~g~iP~~l~~--L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         252 RNNR--IYGTLPQGLTQ--LKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             CSSC--CEECCCGGGGG--CTTCCEEECCSSEEEEECCC
T ss_pred             ccCe--ecccCChHHhC--CCCCCEEECcCCcccccCCC
Confidence            9998  33488887765  99999999999988844443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.4e-17  Score=142.28  Aligned_cols=202  Identities=22%  Similarity=0.319  Sum_probs=164.8

Q ss_pred             cCcCCCCCCccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-
Q 016966           76 GCREWSDGSTIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-  152 (379)
Q Consensus        76 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-  152 (379)
                      +++.++. ..++.++.|++++|.++.++.  +..+++|+.|++++|.        ...++...+..+..++.+...... 
T Consensus        22 ~L~~iP~-~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~--------l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          22 GLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV--------LARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             CCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--------CCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             CCCccCC-CCCCCCCEEECcCCcCCCCCHHHhhcccccccccccccc--------ccccccccccccccccccccccccc
Confidence            4555554 456788999999999988876  4589999999999965        445566667888889998876554 


Q ss_pred             ----CCccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChh
Q 016966          153 ----LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPN  225 (379)
Q Consensus       153 ----lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~  225 (379)
                          .+..+..+++|++|+++.|.+..  +..+....+|+++++++|.++.+|. .+..+++|++|++++|.. ..++..
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l-~~l~~~  171 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPER  171 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CEECTT
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcc-cccchh
Confidence                46678999999999999999877  4667788999999999999998875 577899999999999764 556655


Q ss_pred             hhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc--cccCCcEEEEEee
Q 016966          226 ILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSIYIR  297 (379)
Q Consensus       226 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~  297 (379)
                      .+..+++|+.+.+.+|.+....          +..+..+++|+.|+++.|.+..++...  .+++|+.++++.+
T Consensus       172 ~f~~l~~L~~l~l~~N~l~~i~----------~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQNRVAHVH----------PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEEC----------TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             hhccccccchhhhhhccccccC----------hhHhhhhhhcccccccccccccccccccccccccCEEEecCC
Confidence            5889999999999999988653          678899999999999999999877654  6889999988544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=1.6e-16  Score=134.53  Aligned_cols=187  Identities=20%  Similarity=0.267  Sum_probs=156.2

Q ss_pred             CccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--CCccccCCC
Q 016966           84 STIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--LPSSLGLLS  161 (379)
Q Consensus        84 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--lp~~i~~l~  161 (379)
                      ..+.+++.|++.+|++..++.+..+++|+.|++++|.+.+        +++  |..+++|++++++++.  -...+..++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~--------~~~--l~~l~~l~~l~~~~n~~~~i~~l~~l~  107 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD--------LAP--LKNLTKITELELSGNPLKNVSAIAGLQ  107 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--------CGG--GTTCCSCCEEECCSCCCSCCGGGTTCT
T ss_pred             HHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeec--------ccc--ccccccccccccccccccccccccccc
Confidence            4567899999999999888888899999999999977543        232  6889999999999988  334688999


Q ss_pred             CCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCC
Q 016966          162 NLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE  241 (379)
Q Consensus       162 ~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  241 (379)
                      +|+++.++++.......+...+.++.+.++++.+...+ .+..+++|++|++++|.... .+.  ++++++|+.|++++|
T Consensus       108 ~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~-~~~--l~~l~~L~~L~Ls~n  183 (227)
T d1h6ua2         108 SIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSD-LTP--LANLSKLTTLKADDN  183 (227)
T ss_dssp             TCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSS
T ss_pred             cccccccccccccccchhccccchhhhhchhhhhchhh-hhcccccccccccccccccc-chh--hcccccceecccCCC
Confidence            99999999998877777788899999999998887655 47788999999999976543 333  789999999999999


Q ss_pred             CCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEe
Q 016966          242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYI  296 (379)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~  296 (379)
                      .+.+.            ..++.+++|+.|++++|+++.++..-.+++|+.|+++.
T Consensus       184 ~l~~l------------~~l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         184 KISDI------------SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             CCCCC------------GGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEE
T ss_pred             ccCCC------------hhhcCCCCCCEEECcCCcCCCCcccccCCCCCEEEeeC
Confidence            88763            34788999999999999999888644799999999853

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.70  E-value=5.7e-16  Score=137.05  Aligned_cols=238  Identities=16%  Similarity=0.213  Sum_probs=155.8

Q ss_pred             ccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCc
Q 016966           89 FTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLR  164 (379)
Q Consensus        89 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~  164 (379)
                      .+.++-++.++.++|... .++++.|++++|.        +..+++..|.++++|++|+++++.    .|..+.++++|+
T Consensus        12 ~~~~~C~~~~L~~lP~~l-~~~l~~L~Ls~N~--------i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~   82 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDL-PPDTALLDLQNNK--------ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE   82 (305)
T ss_dssp             TTEEECTTSCCCSCCCSC-CTTCCEEECCSSC--------CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             CCEEEecCCCCCccCCCC-CCCCCEEECcCCc--------CCCcChhHhhccccccccccccccccccchhhhhCCCccC
Confidence            345555555566676532 3578888888864        445666667778888888888877    455677788888


Q ss_pred             EEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCc-ccChhhhCCCCCCcEEEecCC
Q 016966          165 TLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLK-VIPPNILSKLSHLEELYIGRE  241 (379)
Q Consensus       165 ~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~  241 (379)
                      +|++++|.++. |..  ....+..|++..+.+..++. .+.....+..+....+.... ......+..+++|+.+.+..|
T Consensus        83 ~L~l~~n~l~~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n  160 (305)
T d1xkua_          83 RLYLSKNQLKELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT  160 (305)
T ss_dssp             EEECCSSCCSBCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred             EecccCCccCcCccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccC
Confidence            88888887776 433  23467777887777776664 34456667777766643221 112222566777888887777


Q ss_pred             CCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCC-Cccc-cccCCcEEEEEeecccccCcccccceEEEEeCCcc
Q 016966          242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSL-PRGL-LLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKI  319 (379)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~  319 (379)
                      .+...+           ..  .+++|+.|++.+|..... +..+ .++.++.|.++.+...                   
T Consensus       161 ~l~~l~-----------~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~-------------------  208 (305)
T d1xkua_         161 NITTIP-----------QG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-------------------  208 (305)
T ss_dssp             CCCSCC-----------SS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC-------------------
T ss_pred             CccccC-----------cc--cCCccCEEECCCCcCCCCChhHhhcccccccccccccccc-------------------
Confidence            665421           11  246777888877776633 3333 4566777766333222                   


Q ss_pred             cc-hHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccCCC
Q 016966          320 CL-KDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNPA  375 (379)
Q Consensus       320 ~~-~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  375 (379)
                      .+ +.++.. +++|++|++++|.   ++.+|..+..  +++|++|++++|.+..++.
T Consensus       209 ~~~~~~~~~-l~~L~~L~L~~N~---L~~lp~~l~~--l~~L~~L~Ls~N~i~~i~~  259 (305)
T d1xkua_         209 AVDNGSLAN-TPHLRELHLNNNK---LVKVPGGLAD--HKYIQVVYLHNNNISAIGS  259 (305)
T ss_dssp             EECTTTGGG-STTCCEEECCSSC---CSSCCTTTTT--CSSCCEEECCSSCCCCCCT
T ss_pred             ccccccccc-cccceeeeccccc---cccccccccc--ccCCCEEECCCCccCccCh
Confidence            22 333445 4999999999997   8888876654  9999999999998776654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=6.1e-16  Score=127.99  Aligned_cols=160  Identities=23%  Similarity=0.275  Sum_probs=106.6

Q ss_pred             ccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--CCccccCCCC
Q 016966           85 TIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--LPSSLGLLSN  162 (379)
Q Consensus        85 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--lp~~i~~l~~  162 (379)
                      .+++++.|+++++.+..++.+..+++|++|++++|.+.+        +++  +.++++|++|++++|.  ....+..+++
T Consensus        38 ~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~--------~~~--l~~l~~L~~L~l~~n~~~~~~~l~~l~~  107 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD--------ITP--LKNLTKLVDILMNNNQIADITPLANLTN  107 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--------CGG--GTTCTTCCEEECCSSCCCCCGGGTTCTT
T ss_pred             HhcCCCEEECCCCCCCCccccccCCCcCcCccccccccC--------ccc--ccCCcccccccccccccccccccccccc
Confidence            456778888888887777766677788888888765433        222  5677777777777776  2224667777


Q ss_pred             CcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCC
Q 016966          163 LRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRES  242 (379)
Q Consensus       163 L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  242 (379)
                      |++|+++++.+.....+..+++|+.|++++|.+..++ .+..+++|+.|++.+|.. ..++.  ++++++|++|++++|.
T Consensus       108 L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l-~~l~~--l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         108 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQV-TDLKP--LANLTTLERLDISSNK  183 (199)
T ss_dssp             CSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCC-CCCGG--GTTCTTCCEEECCSSC
T ss_pred             cccccccccccccccccchhhhhHHhhhhhhhhcccc-cccccccccccccccccc-cCCcc--ccCCCCCCEEECCCCC
Confidence            7777777776666555667777777777777766655 466777777777777553 33333  5677777777777776


Q ss_pred             CcChhhhhhcccccchHhhcCCCCCcEE
Q 016966          243 FVDWEEEVEGVKNASLEELKHLPNLTSL  270 (379)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L  270 (379)
                      +.+.            +.++.+++|+.|
T Consensus       184 i~~i------------~~l~~L~~L~~L  199 (199)
T d2omxa2         184 VSDI------------SVLAKLTNLESL  199 (199)
T ss_dssp             CCCC------------GGGGGCTTCSEE
T ss_pred             CCCC------------ccccCCCCCCcC
Confidence            6542            245556666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=6.9e-16  Score=128.79  Aligned_cols=162  Identities=28%  Similarity=0.392  Sum_probs=107.8

Q ss_pred             ccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCC
Q 016966           85 TIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLS  161 (379)
Q Consensus        85 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~  161 (379)
                      .+..+++|.++++.+..++.+..+++|++|++++|.+.+        +++  +..+++|++|++++|.   +| .+..++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~--------l~~--~~~l~~L~~L~l~~n~i~~l~-~l~~l~  112 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--------IKP--LANLKNLGWLFLDENKVKDLS-SLKDLK  112 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--------CGG--GTTCTTCCEEECCSSCCCCGG-GGTTCT
T ss_pred             HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccC--------ccc--cccCccccccccccccccccc-cccccc
Confidence            356788888888887777766678888888888865533        232  4567777777777776   33 466677


Q ss_pred             CCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCC
Q 016966          162 NLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE  241 (379)
Q Consensus       162 ~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  241 (379)
                      +|+.|++++|.+..++.+..++++++++++++.++..+ .+..+++|+++++++|... .++.  ++++++|++|++++|
T Consensus       113 ~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~-~i~~--l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         113 KLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQIS-DIVP--LAGLTKLQNLYLSKN  188 (210)
T ss_dssp             TCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCC-CCGG--GTTCTTCCEEECCSS
T ss_pred             cccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccc-cccc--ccCCCCCCEEECCCC
Confidence            77777777777666556667777777777777666544 4556677777777776543 3333  566777777777776


Q ss_pred             CCcChhhhhhcccccchHhhcCCCCCcEEEee
Q 016966          242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVH  273 (379)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  273 (379)
                      .+.+            .+.+..+++|+.|+++
T Consensus       189 ~i~~------------l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         189 HISD------------LRALAGLKNLDVLELF  208 (210)
T ss_dssp             CCCB------------CGGGTTCTTCSEEEEE
T ss_pred             CCCC------------ChhhcCCCCCCEEEcc
Confidence            6654            2346666677777664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.1e-15  Score=133.70  Aligned_cols=190  Identities=17%  Similarity=0.243  Sum_probs=150.3

Q ss_pred             EEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcEE
Q 016966           91 SIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRTL  166 (379)
Q Consensus        91 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~L  166 (379)
                      .+..+++++..+|... .+.++.|++++|.        ...+++..|.++++|++|+++++.    .+..+..+..++.+
T Consensus        15 ~v~c~~~~L~~iP~~i-p~~~~~L~Ls~N~--------i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l   85 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGI-PAASQRIFLHGNR--------ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQL   85 (284)
T ss_dssp             EEECCSSCCSSCCTTC-CTTCSEEECTTSC--------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             EEEcCCCCCCccCCCC-CCCCCEEECcCCc--------CCCCCHHHhhcccccccccccccccccccccccccccccccc
Confidence            3455666677777533 2578999999976        456777778999999999999998    45566778889998


Q ss_pred             EeecC-CCCC--cccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCC
Q 016966          167 SLCSC-GLPD--ISFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRES  242 (379)
Q Consensus       167 ~l~~~-~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  242 (379)
                      ....+ .+..  +..+..+++|++|++++|.+..++. .+..+++|+.+++++|.. ..++...+..+++|++|++.+|.
T Consensus        86 ~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l-~~i~~~~f~~~~~L~~L~l~~N~  164 (284)
T d1ozna_          86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNR  164 (284)
T ss_dssp             ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccc-cccChhHhccccchhhcccccCc
Confidence            87644 4666  5778899999999999998887664 567789999999999765 56665557899999999999999


Q ss_pred             CcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCC-Cccc-cccCCcEEEEEeeccc
Q 016966          243 FVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSL-PRGL-LLEKLERYSIYIRRYF  300 (379)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~  300 (379)
                      +....          +..+..+++|+.+.+..|.+..+ |..+ .+++|+.|+++.+...
T Consensus       165 l~~l~----------~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~  214 (284)
T d1ozna_         165 ISSVP----------ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS  214 (284)
T ss_dssp             CCEEC----------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             ccccc----------hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccc
Confidence            88753          56788999999999999999865 4444 6899999998655443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=8.8e-16  Score=127.00  Aligned_cols=173  Identities=21%  Similarity=0.229  Sum_probs=137.6

Q ss_pred             EeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--CCccccCCCCCcEEEeecC
Q 016966           94 LHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--LPSSLGLLSNLRTLSLCSC  171 (379)
Q Consensus        94 l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--lp~~i~~l~~L~~L~l~~~  171 (379)
                      +..+.+........+++++.|.+.+|.+.+        +..  ++.+++|++|++++|.  ....++.+++|++|++++|
T Consensus        25 l~~~~~~~~~~~~~l~~l~~L~l~~~~i~~--------l~~--l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          25 LGKTNVTDTVSQTDLDQVTTLQADRLGIKS--------IDG--VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN   94 (199)
T ss_dssp             TTCSSTTSEECHHHHTTCCEEECTTSCCCC--------CTT--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred             hCCCCCCCccCHHHhcCCCEEECCCCCCCC--------ccc--cccCCCcCcCccccccccCcccccCCccccccccccc
Confidence            334444333333467899999999976543        332  5779999999999998  2234899999999999999


Q ss_pred             CCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhh
Q 016966          172 GLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVE  251 (379)
Q Consensus       172 ~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  251 (379)
                      .+...+.+..+++|+.|+++++....++ .+..+++|+.|++++|.. ..++.  +..+++|+.|++.+|.+.+.     
T Consensus        95 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l-~~~~~--l~~~~~L~~L~l~~n~l~~l-----  165 (199)
T d2omxa2          95 QIADITPLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTI-SDISA--LSGLTSLQQLNFSSNQVTDL-----  165 (199)
T ss_dssp             CCCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCC-CCCGG--GTTCTTCSEEECCSSCCCCC-----
T ss_pred             cccccccccccccccccccccccccccc-ccchhhhhHHhhhhhhhh-ccccc--ccccccccccccccccccCC-----
Confidence            9888667899999999999999887765 578899999999999764 44553  78999999999999988763     


Q ss_pred             cccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEE
Q 016966          252 GVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERY  292 (379)
Q Consensus       252 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L  292 (379)
                             +.++.+++|+.|++++|++++++....+++|+.|
T Consensus       166 -------~~l~~l~~L~~L~ls~N~i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         166 -------KPLANLTTLERLDISSNKVSDISVLAKLTNLESL  199 (199)
T ss_dssp             -------GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             -------ccccCCCCCCEEECCCCCCCCCccccCCCCCCcC
Confidence                   3588999999999999999988754467888775

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=5.2e-15  Score=123.36  Aligned_cols=162  Identities=23%  Similarity=0.246  Sum_probs=136.0

Q ss_pred             CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCCcccccCcC
Q 016966          107 ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPDISFVGYLK  183 (379)
Q Consensus       107 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~  183 (379)
                      .+..|+.|.+.+|.+.+        ++.  +..+++|++|++++|.   ++ .++.+++|++|++++|.++.++.+..++
T Consensus        44 ~L~~L~~L~l~~~~i~~--------l~~--l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~  112 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKS--------VQG--IQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLSSLKDLK  112 (210)
T ss_dssp             HHHTCCEEECTTSCCCC--------CTT--GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGGGGTTCT
T ss_pred             HhcCccEEECcCCCCCC--------chh--HhhCCCCCEEeCCCccccCcc-ccccCccccccccccccccccccccccc
Confidence            46789999999976543        333  5779999999999998   44 5789999999999999999866789999


Q ss_pred             CCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcC
Q 016966          184 KLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKH  263 (379)
Q Consensus       184 ~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~  263 (379)
                      +|+.|++++|.+..++ .+..+++++.+++++|... ..+.  +..+++|+++++.+|.+.+.            ..++.
T Consensus       113 ~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~~~n~l~-~~~~--~~~l~~L~~l~l~~n~l~~i------------~~l~~  176 (210)
T d1h6ta2         113 KLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKIT-DITV--LSRLTKLDTLSLEDNQISDI------------VPLAG  176 (210)
T ss_dssp             TCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECCSSCCCCC------------GGGTT
T ss_pred             cccccccccccccccc-ccccccccccccccccccc-cccc--cccccccccccccccccccc------------ccccC
Confidence            9999999999888776 6888999999999997654 3333  67899999999999988763            34889


Q ss_pred             CCCCcEEEeeccCCCCCCccccccCCcEEEEE
Q 016966          264 LPNLTSLEVHVRDVSSLPRGLLLEKLERYSIY  295 (379)
Q Consensus       264 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~  295 (379)
                      +++|+.|++++|.++.++....+++|+.|+++
T Consensus       177 l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         177 LTKLQNLYLSKNHISDLRALAGLKNLDVLELF  208 (210)
T ss_dssp             CTTCCEEECCSSCCCBCGGGTTCTTCSEEEEE
T ss_pred             CCCCCEEECCCCCCCCChhhcCCCCCCEEEcc
Confidence            99999999999999988754478999999985

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=2.1e-14  Score=121.20  Aligned_cols=173  Identities=20%  Similarity=0.250  Sum_probs=144.3

Q ss_pred             cCcCCCCCCccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--C
Q 016966           76 GCREWSDGSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--L  153 (379)
Q Consensus        76 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--l  153 (379)
                      ++........++++++|++++|.+..++++..+++++.+.+.+|.+.+        ++.  +..+++|++++++++.  .
T Consensus        52 ~i~~l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~--------i~~--l~~l~~L~~l~l~~~~~~~  121 (227)
T d1h6ua2          52 GVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--------VSA--IAGLQSIKTLDLTSTQITD  121 (227)
T ss_dssp             CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC--------CGG--GTTCTTCCEEECTTSCCCC
T ss_pred             CCCcchhHhcCCCCcEeecCCceeeccccccccccccccccccccccc--------ccc--ccccccccccccccccccc
Confidence            344555567899999999999999888888899999999999965433        332  5789999999999998  4


Q ss_pred             CccccCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCC
Q 016966          154 PSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHL  233 (379)
Q Consensus       154 p~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L  233 (379)
                      ...+.....++.+.++.+.+.....+..+++|++|++++|.+...+ .+..+++|++|++++|. +..++.  ++++++|
T Consensus       122 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n~-l~~l~~--l~~l~~L  197 (227)
T d1h6ua2         122 VTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNK-ISDISP--LASLPNL  197 (227)
T ss_dssp             CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCCCGG--GGGCTTC
T ss_pred             cchhccccchhhhhchhhhhchhhhhccccccccccccccccccch-hhcccccceecccCCCc-cCCChh--hcCCCCC
Confidence            4457788999999999998888666788999999999999888766 48899999999999976 455654  7899999


Q ss_pred             cEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeec
Q 016966          234 EELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHV  274 (379)
Q Consensus       234 ~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  274 (379)
                      ++|++++|.+++.            ..++.+++|+.|+++.
T Consensus       198 ~~L~Ls~N~lt~i------------~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         198 IEVHLKNNQISDV------------SPLANTSNLFIVTLTN  226 (227)
T ss_dssp             CEEECTTSCCCBC------------GGGTTCTTCCEEEEEE
T ss_pred             CEEECcCCcCCCC------------cccccCCCCCEEEeeC
Confidence            9999999998863            3588999999999863

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=2.4e-14  Score=108.43  Aligned_cols=117  Identities=20%  Similarity=0.282  Sum_probs=84.3

Q ss_pred             cEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCC
Q 016966          164 RTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESF  243 (379)
Q Consensus       164 ~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  243 (379)
                      |+|++++|.++.++.+..+++|++|++++|.++++|..++.+++|++|++++|.. ..++.  ++.+++|++|++++|.+
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i-~~l~~--~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL-ENVDG--VANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC-CCCGG--GTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccc-cccCc--cccccccCeEECCCCcc
Confidence            5677888887775567778888888888888888877777888888888888654 44553  67888888888888887


Q ss_pred             cChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCc---cc--cccCCcEE
Q 016966          244 VDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPR---GL--LLEKLERY  292 (379)
Q Consensus       244 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~--~~~~L~~L  292 (379)
                      .+.+         .+..+..+++|+.|++++|.++..+.   .+  .+|+|+.+
T Consensus        78 ~~~~---------~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          78 QQSA---------AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSSS---------TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCC---------CchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            7654         24566777888888888877764442   22  46777665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.52  E-value=8.4e-13  Score=118.27  Aligned_cols=254  Identities=20%  Similarity=0.200  Sum_probs=131.6

Q ss_pred             CccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCCCCccccCC-CCCcEE
Q 016966           88 HFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMILPSSLGLL-SNLRTL  166 (379)
Q Consensus        88 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~lp~~i~~l-~~L~~L  166 (379)
                      ++++|+++++++..+|+.  .++|++|++++|.+.        .+|..    +.+|+.|++.++.+- .+..+ ..|++|
T Consensus        39 ~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~--------~lp~~----~~~L~~L~l~~n~l~-~l~~lp~~L~~L  103 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL--PPHLESLVASCNSLT--------ELPEL----PQSLKSLLVDNNNLK-ALSDLPPLLEYL  103 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCS--------SCCCC----CTTCCEEECCSSCCS-CCCSCCTTCCEE
T ss_pred             CCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCCc--------ccccc----hhhhhhhhhhhcccc-hhhhhccccccc
Confidence            566777777777767653  457777777775543        34432    346777777777610 11122 357777


Q ss_pred             EeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcCh
Q 016966          167 SLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDW  246 (379)
Q Consensus       167 ~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  246 (379)
                      ++++|.+...+.++++++|++|+++++.+...+..   ...+..+.+..+..... . . ++.++.++.+.+..+.....
T Consensus       104 ~L~~n~l~~lp~~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~~~~~-~-~-l~~l~~l~~L~l~~n~~~~~  177 (353)
T d1jl5a_         104 GVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEEL-P-E-LQNLPFLTAIYADNNSLKKL  177 (353)
T ss_dssp             ECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSC-C-C-CTTCTTCCEEECCSSCCSSC
T ss_pred             cccccccccccchhhhccceeeccccccccccccc---cccccchhhcccccccc-c-c-ccccccceeccccccccccc
Confidence            77777777643456777777777777766655532   23344555444332211 1 1 44555666666655544332


Q ss_pred             hhhhhc--------ccccchHhhcCCCCCcEEEeeccCCCCCCccc------------------cccCCcEEEEEeeccc
Q 016966          247 EEEVEG--------VKNASLEELKHLPNLTSLEVHVRDVSSLPRGL------------------LLEKLERYSIYIRRYF  300 (379)
Q Consensus       247 ~~~~~~--------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~------------------~~~~L~~L~l~~~~~~  300 (379)
                      ......        ...........++.|+.+.++.+....++...                  ..+++....+......
T Consensus       178 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  257 (353)
T d1jl5a_         178 PDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFS  257 (353)
T ss_dssp             CCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            210000        00011223445566666666655444333211                  0111222211100000


Q ss_pred             ------------------c-cCcccccceEEEEe-CC-cccchHHHHHHhcccceeeccccccccccccccccccccCCC
Q 016966          301 ------------------S-RKTGIWCRQFRVEL-NN-KICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSH  359 (379)
Q Consensus       301 ------------------~-~~~~~~~~~~~L~l-~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~  359 (379)
                                        . ......++...|++ ++ ...+|..    +++|+.|++++|.   ++.++.     .+++
T Consensus       258 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~L~~N~---L~~l~~-----~~~~  325 (353)
T d1jl5a_         258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNH---LAEVPE-----LPQN  325 (353)
T ss_dssp             EESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSC---CSCCCC-----CCTT
T ss_pred             ccccccchhcccccccCccccccccCCCCCEEECCCCccCccccc----cCCCCEEECCCCc---CCcccc-----ccCC
Confidence                              0 00011233447777 33 2334532    4788888888886   677764     2578


Q ss_pred             CcEEEecCCCCccCC
Q 016966          360 LKRLRLEGSDLALNP  374 (379)
Q Consensus       360 L~~L~l~~c~~l~~~  374 (379)
                      |++|++++|+..+.|
T Consensus       326 L~~L~L~~N~L~~lp  340 (353)
T d1jl5a_         326 LKQLHVEYNPLREFP  340 (353)
T ss_dssp             CCEEECCSSCCSSCC
T ss_pred             CCEEECcCCcCCCCC
Confidence            999999999865544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.9e-13  Score=114.27  Aligned_cols=188  Identities=15%  Similarity=0.148  Sum_probs=134.1

Q ss_pred             ccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-----CCccc
Q 016966           85 TIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-----LPSSL  157 (379)
Q Consensus        85 ~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-----lp~~i  157 (379)
                      .++++++|++++|.+..++.  +.++++|+.|++++|.+       ...++...|..++.++.+.+..+.     .+..+
T Consensus        27 l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~-------~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~   99 (242)
T d1xwdc1          27 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV-------LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF   99 (242)
T ss_dssp             SCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTT-------CCEECSSSEESCTTCCEEEEECCTTCCEECTTSE
T ss_pred             CCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccc-------cceeeccccccccccccccccccccccccccccc
Confidence            45689999999999987775  45889999999999654       445666678889999999887654     55668


Q ss_pred             cCCCCCcEEEeecCCCCCc---ccccCcCCCcEEEeeCCcCcccch-hhcCC-CCCCEEeccCCCCCcccChhhhCCCCC
Q 016966          158 GLLSNLRTLSLCSCGLPDI---SFVGYLKKLEILCLRGSDIVKLPV-EVGEL-TWLKLLDLRDCCFLKVIPPNILSKLSH  232 (379)
Q Consensus       158 ~~l~~L~~L~l~~~~l~~~---~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l-~~L~~L~l~~~~~~~~~~~~~l~~l~~  232 (379)
                      ..+++|++++++++.+..+   ..+..++.+..+...++.+..++. .+..+ ..++.|++.++.. ..++.. ..+.++
T Consensus       100 ~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l-~~i~~~-~~~~~~  177 (242)
T d1xwdc1         100 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI-QEIHNC-AFNGTQ  177 (242)
T ss_dssp             ECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC-CEECTT-TTTTCC
T ss_pred             cccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccc-cccccc-cccchh
Confidence            8899999999999988762   334455666666666667777664 33444 4788888887554 456655 345666


Q ss_pred             CcEE-EecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEE
Q 016966          233 LEEL-YIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERY  292 (379)
Q Consensus       233 L~~L-~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L  292 (379)
                      ++.+ .+.+|.+...+          ...+..+++|+.|++++|+++.+|... +.+|..|
T Consensus       178 l~~~~~l~~n~l~~l~----------~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~~l~~L  227 (242)
T d1xwdc1         178 LDELNLSDNNNLEELP----------NDVFHGASGPVILDISRTRIHSLPSYG-LENLKKL  227 (242)
T ss_dssp             EEEEECTTCTTCCCCC----------TTTTTTSCCCSEEECTTSCCCCCCSSS-CTTCCEE
T ss_pred             hhcccccccccccccc----------HHHhcCCCCCCEEECCCCcCCccCHHH-HcCCccc
Confidence            6655 45666676542          345788899999999999999887653 3444444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=2e-13  Score=103.20  Aligned_cols=101  Identities=21%  Similarity=0.170  Sum_probs=68.6

Q ss_pred             eEEEecCCC--CCccccCCCCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCc
Q 016966          144 RVVNLTDMI--LPSSLGLLSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLK  220 (379)
Q Consensus       144 ~~L~l~~~~--lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~  220 (379)
                      |+|++++|.  ....+..+.+|++|++++|.++. |+.++.+++|++|++++|.++.+| .+..+++|++|++++|....
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~~   79 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQ   79 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCS
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccCC
Confidence            567777776  22246777777777777777777 666777777777777777777776 47777777777777765432


Q ss_pred             ccChhhhCCCCCCcEEEecCCCCcC
Q 016966          221 VIPPNILSKLSHLEELYIGRESFVD  245 (379)
Q Consensus       221 ~~~~~~l~~l~~L~~L~l~~~~~~~  245 (379)
                      .-....++.+++|+.|++++|.+..
T Consensus        80 ~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          80 SAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCCchhhcCCCCCCEEECCCCcCCc
Confidence            2211225677777778777777654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=9.8e-14  Score=110.21  Aligned_cols=126  Identities=21%  Similarity=0.204  Sum_probs=74.2

Q ss_pred             ccCCCCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcE
Q 016966          157 LGLLSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEE  235 (379)
Q Consensus       157 i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  235 (379)
                      +.+..++++|++++|+|+. +.....+++|++|++++|.++.++ .+..+++|++|++++|.. ..++...+..+++|++
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i-~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLTE   91 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCC-CEECSCHHHHCTTCCE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccc-cCCCcccccccccccc
Confidence            3445556666666666665 333345666666666666666664 456666666666666553 3344433455666666


Q ss_pred             EEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCcc----c-cccCCcEEE
Q 016966          236 LYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRG----L-LLEKLERYS  293 (379)
Q Consensus       236 L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----~-~~~~L~~L~  293 (379)
                      |++.+|.+..+.         ....+..+++|+.|++++|.++..|..    + .+|+|+.|+
T Consensus        92 L~L~~N~i~~~~---------~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          92 LILTNNSLVELG---------DLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EECCSCCCCCGG---------GGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ceeccccccccc---------cccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            666666666543         234556666677777776666655531    1 456666654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=9.1e-13  Score=111.94  Aligned_cols=220  Identities=11%  Similarity=0.097  Sum_probs=131.3

Q ss_pred             cEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCc-cccCCCCCcEEEeecCCCCC---cccccCcCC
Q 016966          112 ELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPS-SLGLLSNLRTLSLCSCGLPD---ISFVGYLKK  184 (379)
Q Consensus       112 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~-~i~~l~~L~~L~l~~~~l~~---~~~~~~l~~  184 (379)
                      +++..++..        ...+|+.++   +++++|++++|.   +|. .+.++++|++|++++|.+..   +..+..+++
T Consensus        11 ~~i~c~~~~--------l~~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~   79 (242)
T d1xwdc1          11 RVFLCQESK--------VTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK   79 (242)
T ss_dssp             SEEEEESCS--------CSSCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTT
T ss_pred             CEEEEeCCC--------CCCcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccc
Confidence            456666522        445666553   467888888877   443 56778888888888887665   345677888


Q ss_pred             CcEEEeeCC-cCcccc-hhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhc
Q 016966          185 LEILCLRGS-DIVKLP-VEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELK  262 (379)
Q Consensus       185 L~~L~l~~~-~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~  262 (379)
                      ++++.+..+ .+..++ ..+..+++|++++++++.....-+...+..+..+..+....+.+....          ...+.
T Consensus        80 l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~----------~~~~~  149 (242)
T d1xwdc1          80 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE----------RNSFV  149 (242)
T ss_dssp             CCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEEC----------TTSST
T ss_pred             cccccccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccc----------ccccc
Confidence            888877654 565554 346778888888888865433222222334445555555544554432          23333


Q ss_pred             CC-CCCcEEEeeccCCCCCCccc-cccCCcEEEEEeecccccCcccccceEEEEeCCcccchHHHHHHhcccceeecccc
Q 016966          263 HL-PNLTSLEVHVRDVSSLPRGL-LLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSEL  340 (379)
Q Consensus       263 ~l-~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  340 (379)
                      .+ ..++.|++.++.++.++... ..+++..+...  ..                +....+|.+....+++|+.|++++|
T Consensus       150 ~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l--~~----------------n~l~~l~~~~f~~l~~L~~L~Ls~N  211 (242)
T d1xwdc1         150 GLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLS--DN----------------NNLEELPNDVFHGASGPVILDISRT  211 (242)
T ss_dssp             TSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECT--TC----------------TTCCCCCTTTTTTSCCCSEEECTTS
T ss_pred             cccccceeeecccccccccccccccchhhhccccc--cc----------------cccccccHHHhcCCCCCCEEECCCC
Confidence            33 36777788777777666543 33344333220  00                1122344443222599999999999


Q ss_pred             ccccccccccccccccCCCCcEEEecCCCCccCCCCC
Q 016966          341 QEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNPAES  377 (379)
Q Consensus       341 ~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  377 (379)
                      +   ++.++..    .|.+|..|..-++..++..|.+
T Consensus       212 ~---l~~l~~~----~~~~l~~L~~l~~~~l~~lp~~  241 (242)
T d1xwdc1         212 R---IHSLPSY----GLENLKKLRARSTYNLKKLPTL  241 (242)
T ss_dssp             C---CCCCCSS----SCTTCCEEESSSEESSSCSCCC
T ss_pred             c---CCccCHH----HHcCCcccccCcCCCCCcCCCC
Confidence            7   7787753    3666666666566666666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.7e-13  Score=108.85  Aligned_cols=126  Identities=16%  Similarity=0.223  Sum_probs=72.2

Q ss_pred             hCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhh-cCCCCCCEEec
Q 016966          138 KSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEV-GELTWLKLLDL  213 (379)
Q Consensus       138 ~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~L~~L~l  213 (379)
                      .++..+|.|+|++|.   ++.....+.+|++|++++|.++..+.+..+++|++|++++|.++.+|..+ ..+++|++|++
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            345556666666665   44444556666666666666665445666666777777777666665443 45666777777


Q ss_pred             cCCCCCcccCh-hhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEE
Q 016966          214 RDCCFLKVIPP-NILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLE  271 (379)
Q Consensus       214 ~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  271 (379)
                      ++|... .++. ..+..+++|++|++.+|.+...+       ......+..+++|+.|+
T Consensus        95 ~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~~~-------~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          95 TNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKK-------HYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGST-------THHHHHHHHCTTCSEET
T ss_pred             cccccc-ccccccccccccccchhhcCCCcccccc-------chHHHHHHHCCCcCeeC
Confidence            665532 2221 22566667777777766654422       00122355566666665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.42  E-value=1.7e-11  Score=109.62  Aligned_cols=76  Identities=20%  Similarity=0.233  Sum_probs=59.2

Q ss_pred             ccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCC
Q 016966           85 TIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLS  161 (379)
Q Consensus        85 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~  161 (379)
                      .++++++|++++|.+..+|..  ..+|+.|.+.+|.++.     ...+|       +.|++|++++|.   +| .++.++
T Consensus        56 ~~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~-----l~~lp-------~~L~~L~L~~n~l~~lp-~~~~l~  120 (353)
T d1jl5a_          56 LPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKA-----LSDLP-------PLLEYLGVSNNQLEKLP-ELQNSS  120 (353)
T ss_dssp             CCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSC-----CCSCC-------TTCCEEECCSSCCSSCC-CCTTCT
T ss_pred             CCCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccch-----hhhhc-------ccccccccccccccccc-chhhhc
Confidence            457899999999999888864  4689999999977644     22222       468999999988   66 467899


Q ss_pred             CCcEEEeecCCCCC
Q 016966          162 NLRTLSLCSCGLPD  175 (379)
Q Consensus       162 ~L~~L~l~~~~l~~  175 (379)
                      +|++|+++++.+..
T Consensus       121 ~L~~L~l~~~~~~~  134 (353)
T d1jl5a_         121 FLKIIDVDNNSLKK  134 (353)
T ss_dssp             TCCEEECCSSCCSC
T ss_pred             cceeeccccccccc
Confidence            99999998887654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.1e-13  Score=117.05  Aligned_cols=172  Identities=16%  Similarity=0.205  Sum_probs=87.4

Q ss_pred             CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcEEEeecCC-CCC--ccc-
Q 016966          107 ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRTLSLCSCG-LPD--ISF-  178 (379)
Q Consensus       107 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~L~l~~~~-l~~--~~~-  178 (379)
                      ...+|+.|+++++.+       .......++..+++|++|++++|.    .+..+..+++|++|++++|. +++  ... 
T Consensus        44 ~~~~L~~LdLs~~~i-------~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l  116 (284)
T d2astb2          44 SPFRVQHMDLSNSVI-------EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL  116 (284)
T ss_dssp             CCBCCCEEECTTCEE-------CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH
T ss_pred             cCCCCCEEECCCCcc-------CHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchh
Confidence            334566666665332       122223445666667777776665    34455666667777776653 544  222 


Q ss_pred             ccCcCCCcEEEeeCC-cCc--ccchhhc-CCCCCCEEeccCCCC-Cc-ccChhhhCCCCCCcEEEecCCCCcChhhhhhc
Q 016966          179 VGYLKKLEILCLRGS-DIV--KLPVEVG-ELTWLKLLDLRDCCF-LK-VIPPNILSKLSHLEELYIGRESFVDWEEEVEG  252 (379)
Q Consensus       179 ~~~l~~L~~L~l~~~-~l~--~lp~~~~-~l~~L~~L~l~~~~~-~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  252 (379)
                      ...+++|++|++++| .++  .++..+. ..++|++|+++++.. +. ........++++|++|++++|......     
T Consensus       117 ~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~-----  191 (284)
T d2astb2         117 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND-----  191 (284)
T ss_dssp             HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG-----
T ss_pred             hHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCch-----
Confidence            345666777777665 333  2222222 235667777665421 11 111122345666777777665432211     


Q ss_pred             ccccchHhhcCCCCCcEEEeecc-CCCC-CCccc-cccCCcEEEE
Q 016966          253 VKNASLEELKHLPNLTSLEVHVR-DVSS-LPRGL-LLEKLERYSI  294 (379)
Q Consensus       253 ~~~~~~~~l~~l~~L~~L~l~~~-~~~~-~~~~~-~~~~L~~L~l  294 (379)
                          .+..+..+++|++|+++++ .+++ ....+ .+++|+.|++
T Consensus       192 ----~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l  232 (284)
T d2astb2         192 ----CFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV  232 (284)
T ss_dssp             ----GGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred             ----hhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEee
Confidence                3455556666777777653 3331 11111 3556666555

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3e-13  Score=117.87  Aligned_cols=174  Identities=23%  Similarity=0.235  Sum_probs=126.8

Q ss_pred             CccCCccEEEEeCCCCC--CCCC-CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-CC-----
Q 016966           84 STIKHFTSIVLHGIKPN--LLPE-VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-LP-----  154 (379)
Q Consensus        84 ~~~~~l~~L~l~~~~~~--~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-lp-----  154 (379)
                      ....++++|+++++.+.  .+.. +..+++|+.|.+.++.+.+       ..+. .+..+++|++|++++|. +.     
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~-------~~~~-~l~~~~~L~~L~Ls~c~~itd~~l~  114 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD-------PIVN-TLAKNSNLVRLNLSGCSGFSEFALQ  114 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH-------HHHH-HHTTCTTCSEEECTTCBSCCHHHHH
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCc-------HHHH-HHhcCCCCcCccccccccccccccc
Confidence            34568999999988762  2333 3388999999999965422       2333 35678999999999986 32     


Q ss_pred             ccccCCCCCcEEEeecCC-CCC--c-ccccC-cCCCcEEEeeCC--cCc--ccchhhcCCCCCCEEeccCCCCCcccChh
Q 016966          155 SSLGLLSNLRTLSLCSCG-LPD--I-SFVGY-LKKLEILCLRGS--DIV--KLPVEVGELTWLKLLDLRDCCFLKVIPPN  225 (379)
Q Consensus       155 ~~i~~l~~L~~L~l~~~~-l~~--~-~~~~~-l~~L~~L~l~~~--~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~  225 (379)
                      .-...+++|++|++++|. +++  . ..+.+ .++|+.|+++++  .++  .+..-...+++|++|++++|..+......
T Consensus       115 ~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~  194 (284)
T d2astb2         115 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ  194 (284)
T ss_dssp             HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG
T ss_pred             hhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhh
Confidence            223568999999999985 554  2 33444 478999999986  344  34444567899999999998765543333


Q ss_pred             hhCCCCCCcEEEecCCC-CcChhhhhhcccccchHhhcCCCCCcEEEeecc
Q 016966          226 ILSKLSHLEELYIGRES-FVDWEEEVEGVKNASLEELKHLPNLTSLEVHVR  275 (379)
Q Consensus       226 ~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  275 (379)
                      .++++++|++|++++|. +++.          .+..++.+++|+.|++.++
T Consensus       195 ~l~~~~~L~~L~L~~C~~i~~~----------~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         195 EFFQLNYLQHLSLSRCYDIIPE----------TLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGCTTCCEEECTTCTTCCGG----------GGGGGGGCTTCCEEECTTS
T ss_pred             hhcccCcCCEEECCCCCCCChH----------HHHHHhcCCCCCEEeeeCC
Confidence            37899999999999874 4432          3566788999999999876

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.34  E-value=4e-12  Score=103.94  Aligned_cols=121  Identities=17%  Similarity=0.165  Sum_probs=72.6

Q ss_pred             cEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcE
Q 016966           90 TSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRT  165 (379)
Q Consensus        90 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~  165 (379)
                      ++++.+++++..+|... .++++.|++++|.+.       ..++...|..+++|+.|+++++.    .+..+..+++|++
T Consensus        11 ~~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i~-------~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~   82 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELG-------RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE   82 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCC-------SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             CEEEEeCCCcCccCCCC-CCCCCEEEeCCCCCc-------ccccccccCCCceEeeeeccccccccccccccccccccce
Confidence            35666666666666532 256777777776552       23444556666777777776665    3445556666666


Q ss_pred             EEeecCCCCC--cccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCC
Q 016966          166 LSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCF  218 (379)
Q Consensus       166 L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~  218 (379)
                      |++++|++..  +..+.++++|++|++++|.++.+|+ .+..+++|++|++++|..
T Consensus        83 L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             eeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccc
Confidence            6666666665  3445666666666666666666654 245566666666665543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.25  E-value=1.8e-11  Score=99.97  Aligned_cols=85  Identities=24%  Similarity=0.257  Sum_probs=34.9

Q ss_pred             cCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCc
Q 016966          158 GLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLE  234 (379)
Q Consensus       158 ~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  234 (379)
                      ..+++|++|++++|.+..  +..+..+++|++|++++|++..+|+ .+.++++|++|++++|. +..++...+..+++|+
T Consensus        51 ~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~L~  129 (192)
T d1w8aa_          51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLT  129 (192)
T ss_dssp             GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCC
T ss_pred             CCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCcc-ccccCHHHhcCCcccc
Confidence            344444444444444433  2333344444444444444444432 23344444444444432 2223322234444444


Q ss_pred             EEEecCCCC
Q 016966          235 ELYIGRESF  243 (379)
Q Consensus       235 ~L~l~~~~~  243 (379)
                      +|++++|.+
T Consensus       130 ~l~L~~N~~  138 (192)
T d1w8aa_         130 SLNLASNPF  138 (192)
T ss_dssp             EEECTTCCB
T ss_pred             ccccccccc
Confidence            444444433

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.23  E-value=6.3e-14  Score=115.28  Aligned_cols=111  Identities=22%  Similarity=0.290  Sum_probs=53.3

Q ss_pred             ccccCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCc
Q 016966          155 SSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLE  234 (379)
Q Consensus       155 ~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  234 (379)
                      .++..+.+|++|++++|.|+.++.+..+++|++|++++|.++.+|.....+++|++|++++|.. ..++.  +..+++|+
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i-~~l~~--~~~l~~L~  118 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQI-ASLSG--IEKLVNLR  118 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEEC-CCHHH--HHHHHHSS
T ss_pred             hHHhcccccceeECcccCCCCcccccCCccccChhhcccccccccccccccccccccccccccc-ccccc--cccccccc
Confidence            3444555555555555555443344555555555555555555543333344455555555432 22222  34455555


Q ss_pred             EEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCC
Q 016966          235 ELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDV  277 (379)
Q Consensus       235 ~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  277 (379)
                      .|++++|.+..+.         ....++.+++|+.|++++|.+
T Consensus       119 ~L~L~~N~i~~~~---------~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         119 VLYMSNNKITNWG---------EIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EEEESEEECCCHH---------HHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccchhcccc---------ccccccCCCccceeecCCCcc
Confidence            5555555554432         123445555555555555443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.17  E-value=5.5e-13  Score=109.54  Aligned_cols=106  Identities=21%  Similarity=0.260  Sum_probs=65.7

Q ss_pred             hhCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEe
Q 016966          137 FKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLD  212 (379)
Q Consensus       137 ~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~  212 (379)
                      +..+++|+.|++++|.   ++ .+..+++|++|++++|.++. +.....+++|++|++++|.++.++ .+..+++|++|+
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~  121 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY  121 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSEEE
T ss_pred             HhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccccccccc-cccccccccccc
Confidence            4566677777776666   33 46666777777777776666 333334456777777777776664 466667777777


Q ss_pred             ccCCCCCcccCh-hhhCCCCCCcEEEecCCCCcC
Q 016966          213 LRDCCFLKVIPP-NILSKLSHLEELYIGRESFVD  245 (379)
Q Consensus       213 l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~  245 (379)
                      +++|... .++. ..++.+++|+.|++++|++..
T Consensus       122 L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         122 MSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             ESEEECC-CHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccchhc-cccccccccCCCccceeecCCCcccc
Confidence            7765432 2221 225677777777777766543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.11  E-value=1.7e-11  Score=109.70  Aligned_cols=38  Identities=16%  Similarity=0.294  Sum_probs=19.6

Q ss_pred             cccceeeccccccccccc-----cccccccccCCCCcEEEecCCCCc
Q 016966          330 QRIEDLELSELQEQDVDY-----FRNELVKVGSSHLKRLRLEGSDLA  371 (379)
Q Consensus       330 ~~L~~L~l~~~~~~~l~~-----~~~~~~~~~~~~L~~L~l~~c~~l  371 (379)
                      +.|++|++++|.   +..     +...+ ...++.|++|++++|...
T Consensus       273 ~~L~~L~ls~N~---i~~~~~~~l~~~l-~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         273 IGLQTLRLQYNE---IELDAVRTLKTVI-DEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             CCCCEEECCSSC---CBHHHHHHHHHHH-HHHCTTCCEEECTTSBSC
T ss_pred             CCCCEEECCCCc---CChHHHHHHHHHH-HccCCCCCEEECCCCcCC
Confidence            456666666665   322     11111 123566677777666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1e-11  Score=114.92  Aligned_cols=106  Identities=18%  Similarity=0.129  Sum_probs=75.9

Q ss_pred             CCccEEEEeCCCCCCC--CC-CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCCC--------Cc
Q 016966           87 KHFTSIVLHGIKPNLL--PE-VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMIL--------PS  155 (379)
Q Consensus        87 ~~l~~L~l~~~~~~~~--~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l--------p~  155 (379)
                      .+++.|+++++++...  .. ...++++++|.+.+|.+.+..   ...+. ..+..+++|+.|+|++|.+        ..
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~---~~~l~-~~L~~~~~L~~LdLs~N~i~~~~~~~l~~   77 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEAR---CKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQ   77 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHH---HHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHH---HHHHH-HHHhcCCCCCEEECcCCcCChHHHHHHHH
Confidence            3688999999988432  22 337899999999998764320   11222 3457899999999999871        22


Q ss_pred             ccc-CCCCCcEEEeecCCCCC------cccccCcCCCcEEEeeCCcCc
Q 016966          156 SLG-LLSNLRTLSLCSCGLPD------ISFVGYLKKLEILCLRGSDIV  196 (379)
Q Consensus       156 ~i~-~l~~L~~L~l~~~~l~~------~~~~~~l~~L~~L~l~~~~l~  196 (379)
                      .+. ...+|++|++++|.+++      +..+..+++|++|++++|.++
T Consensus        78 ~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          78 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             HHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            222 23579999999999875      245677899999999998764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.00  E-value=6e-11  Score=106.00  Aligned_cols=232  Identities=17%  Similarity=0.081  Sum_probs=138.5

Q ss_pred             cCCccEEEEeCCCCC-----CCC-CCCCCCCccEEEeecCCCCCCCCCCCcccCh------hhhhCCCceeEEEecCCC-
Q 016966           86 IKHFTSIVLHGIKPN-----LLP-EVLECPQLELLFIRGGGRDDPWETSPVTIPD------NFFKSMIEVRVVNLTDMI-  152 (379)
Q Consensus        86 ~~~l~~L~l~~~~~~-----~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~------~~~~~l~~L~~L~l~~~~-  152 (379)
                      ...++.|++++|.+.     .+. .+...++|+.|.+.++..+..    ....+.      ..+..+++|+.|++++|. 
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRV----KDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSC----GGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCccccc----ccccchHHHHHHHHHhhCCCccccccccccc
Confidence            457788888887652     122 233677888888877543321    111111      223457788888888876 


Q ss_pred             -------CCccccCCCCCcEEEeecCCCCC--ccc-------------ccCcCCCcEEEeeCCcCc-----ccchhhcCC
Q 016966          153 -------LPSSLGLLSNLRTLSLCSCGLPD--ISF-------------VGYLKKLEILCLRGSDIV-----KLPVEVGEL  205 (379)
Q Consensus       153 -------lp~~i~~l~~L~~L~l~~~~l~~--~~~-------------~~~l~~L~~L~l~~~~l~-----~lp~~~~~l  205 (379)
                             +...+...++|++|++++|.+..  ...             ....+.|+.+.++++.+.     .+...+...
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~  185 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH  185 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred             ccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhh
Confidence                   22334566788888888887643  111             123567888888887665     334445667


Q ss_pred             CCCCEEeccCCCCCccc----ChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCC
Q 016966          206 TWLKLLDLRDCCFLKVI----PPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLP  281 (379)
Q Consensus       206 ~~L~~L~l~~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  281 (379)
                      +.|++|++++|.....-    ....+...++|++|++++|.+....      ...+...+..+++|++|++++|.+....
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g------~~~L~~~l~~~~~L~~L~Ls~n~i~~~g  259 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG------SSALAIALKSWPNLRELGLNDCLLSARG  259 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH------HHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhcccccccccccccc------cccccccccccccchhhhhhcCccCchh
Confidence            78888888887654321    1122566788888888888765422      2234566777888888888888766311


Q ss_pred             -----ccc---cccCCcEEEEEeecccccCcccccceEEEEeCCcccchHHHHHHhcccceeeccccc
Q 016966          282 -----RGL---LLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQ  341 (379)
Q Consensus       282 -----~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  341 (379)
                           ..+   ..+.|++|+++.+....              .....+...+..-.+.|++|++++|.
T Consensus       260 ~~~l~~~l~~~~~~~L~~L~ls~N~i~~--------------~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         260 AAAVVDAFSKLENIGLQTLRLQYNEIEL--------------DAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHHHHHHTCSSCCCCEEECCSSCCBH--------------HHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             hHHHHHHhhhccCCCCCEEECCCCcCCh--------------HHHHHHHHHHHccCCCCCEEECCCCc
Confidence                 111   12457777774433220              00111333343224789999999987

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2e-09  Score=84.15  Aligned_cols=107  Identities=14%  Similarity=0.046  Sum_probs=74.8

Q ss_pred             CcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHh
Q 016966          181 YLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEE  260 (379)
Q Consensus       181 ~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  260 (379)
                      .+....+++..++++.+.|..+..+++|++|++.+++.+..++...+..+++|+.|++++|.+....          +..
T Consensus         6 ~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~----------~~~   75 (156)
T d2ifga3           6 CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA----------PDA   75 (156)
T ss_dssp             CCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC----------TTG
T ss_pred             CcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcc----------ccc
Confidence            3344556777777777777777777777888777666666676665777788888888877777643          456


Q ss_pred             hcCCCCCcEEEeeccCCCCCCccc-cccCCcEEEEEee
Q 016966          261 LKHLPNLTSLEVHVRDVSSLPRGL-LLEKLERYSIYIR  297 (379)
Q Consensus       261 l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~  297 (379)
                      +..+++|+.|++++|.++.+|... ...+|+.|++..+
T Consensus        76 f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          76 FHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             GGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSS
T ss_pred             ccccccccceeccCCCCcccChhhhccccccccccCCC
Confidence            777778888888888888777665 3446777776433

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.2e-08  Score=79.64  Aligned_cols=90  Identities=18%  Similarity=0.072  Sum_probs=47.3

Q ss_pred             CCccccCCCCCcEEEeecCC-CCC--cccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhC
Q 016966          153 LPSSLGLLSNLRTLSLCSCG-LPD--ISFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILS  228 (379)
Q Consensus       153 lp~~i~~l~~L~~L~l~~~~-l~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~  228 (379)
                      .|..+..+++|++|+++++. ++.  +..+..+++|+.|++++|+++.++. .+..+++|++|++++|. +..+|...+.
T Consensus        23 ~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~  101 (156)
T d2ifga3          23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQ  101 (156)
T ss_dssp             TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTC
T ss_pred             CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC-CcccChhhhc
Confidence            34444555555555554443 444  3445556666666666666665543 35556666666666644 3344444332


Q ss_pred             CCCCCcEEEecCCCCc
Q 016966          229 KLSHLEELYIGRESFV  244 (379)
Q Consensus       229 ~l~~L~~L~l~~~~~~  244 (379)
                       ..+|+.|++++|.+.
T Consensus       102 -~~~l~~L~L~~Np~~  116 (156)
T d2ifga3         102 -GLSLQELVLSGNPLH  116 (156)
T ss_dssp             -SCCCCEEECCSSCCC
T ss_pred             -cccccccccCCCccc
Confidence             234666666666553

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1e-06  Score=80.48  Aligned_cols=105  Identities=21%  Similarity=0.346  Sum_probs=77.4

Q ss_pred             CceeEEEecCCC-----CCccccCCCCCcEEEeecCCCCC--c----ccccCcCCCcEEEeeCCcCcc-----cchhhc-
Q 016966          141 IEVRVVNLTDMI-----LPSSLGLLSNLRTLSLCSCGLPD--I----SFVGYLKKLEILCLRGSDIVK-----LPVEVG-  203 (379)
Q Consensus       141 ~~L~~L~l~~~~-----lp~~i~~l~~L~~L~l~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~~-----lp~~~~-  203 (379)
                      .+|++||++++.     +..-+..+++++.|++++|.++.  .    ..+..+++|++|++++|.++.     +...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            468999999988     23345678899999999999875  2    445678999999999998762     222332 


Q ss_pred             CCCCCCEEeccCCCCCcc----cChhhhCCCCCCcEEEecCCCCcCh
Q 016966          204 ELTWLKLLDLRDCCFLKV----IPPNILSKLSHLEELYIGRESFVDW  246 (379)
Q Consensus       204 ~l~~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~  246 (379)
                      ...+|++|++++|.....    ++.. +..+++|++|++++|.+...
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~-l~~~~~L~~L~L~~N~i~~~  127 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELHLSDNLLGDA  127 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHH-TTSCTTCCEEECCSSBCHHH
T ss_pred             CCCCCCEEECCCCCccccccccccch-hhccccccccccccccchhh
Confidence            235799999999875433    2223 67889999999999887643

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=3.8e-07  Score=71.28  Aligned_cols=58  Identities=24%  Similarity=0.193  Sum_probs=24.1

Q ss_pred             CCCCcEEEeecCCCCCc----ccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCC
Q 016966          160 LSNLRTLSLCSCGLPDI----SFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCC  217 (379)
Q Consensus       160 l~~L~~L~l~~~~l~~~----~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~  217 (379)
                      +++|++|++++|+++..    ..+..+++|++|++++|.++.+++ ......+|++|++++|.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCC
Confidence            34444444444444431    223334445555555554444432 11122334444444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=2.7e-07  Score=72.17  Aligned_cols=88  Identities=23%  Similarity=0.173  Sum_probs=50.0

Q ss_pred             cCcCCCcEEEeeCCcCcccc---hhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhccccc
Q 016966          180 GYLKKLEILCLRGSDIVKLP---VEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNA  256 (379)
Q Consensus       180 ~~l~~L~~L~l~~~~l~~lp---~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  256 (379)
                      ..+++|++|++++|+++.++   ..+..+++|+.|++++|.. ..++.........|+.|++.+|++....   ......
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i-~~l~~l~~l~~~~L~~L~L~~Npl~~~~---~~~~~y  137 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL-KSERELDKIKGLKLEELWLDGNSLSDTF---RDQSTY  137 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCC-CCGGGHHHHTTCCCSSCCCTTSTTSSSS---SSHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcc-ccchhhhhhhccccceeecCCCCcCcCc---ccchhH
Confidence            45777888888888777553   3455677788888877554 3333311223445777777777765421   000111


Q ss_pred             chHhhcCCCCCcEEE
Q 016966          257 SLEELKHLPNLTSLE  271 (379)
Q Consensus       257 ~~~~l~~l~~L~~L~  271 (379)
                      ....+..+|+|+.|+
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence            223355666776664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.49  E-value=6e-05  Score=58.63  Aligned_cols=12  Identities=8%  Similarity=0.235  Sum_probs=5.1

Q ss_pred             hcCCCCCcEEEe
Q 016966          261 LKHLPNLTSLEV  272 (379)
Q Consensus       261 l~~l~~L~~L~l  272 (379)
                      +...++|+.|++
T Consensus       127 L~~n~sL~~l~l  138 (167)
T d1pgva_         127 IEENESLLRVGI  138 (167)
T ss_dssp             HHHCSSCCEEEC
T ss_pred             HHhCCCccEeeC
Confidence            333344444444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.46  E-value=3.4e-05  Score=60.07  Aligned_cols=105  Identities=11%  Similarity=0.089  Sum_probs=69.4

Q ss_pred             hhhCCCceeEEEecCCC---------CCccccCCCCCcEEEeecCCCCC--c----ccccCcCCCcEEEeeCCcCc----
Q 016966          136 FFKSMIEVRVVNLTDMI---------LPSSLGLLSNLRTLSLCSCGLPD--I----SFVGYLKKLEILCLRGSDIV----  196 (379)
Q Consensus       136 ~~~~l~~L~~L~l~~~~---------lp~~i~~l~~L~~L~l~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~----  196 (379)
                      +..+.+.|+.|+|+++.         +-..+....+|++|++++|.+..  .    ..+...+.|++|++++|.++    
T Consensus        10 l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~   89 (167)
T d1pgva_          10 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL   89 (167)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHH
Confidence            33455777777777643         22245666778888888888765  2    34455678999999998877    


Q ss_pred             -ccchhhcCCCCCCEEeccCCCCCcc-------cChhhhCCCCCCcEEEecCC
Q 016966          197 -KLPVEVGELTWLKLLDLRDCCFLKV-------IPPNILSKLSHLEELYIGRE  241 (379)
Q Consensus       197 -~lp~~~~~l~~L~~L~l~~~~~~~~-------~~~~~l~~l~~L~~L~l~~~  241 (379)
                       .+-..+..-+.|++|+++++.....       +... +..-++|+.|+++.+
T Consensus        90 ~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~-L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          90 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA-IEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHH-HHHCSSCCEEECCCC
T ss_pred             HHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHH-HHhCCCccEeeCcCC
Confidence             2334566778899999987542211       2222 455678899988754

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.14  E-value=0.00024  Score=55.01  Aligned_cols=17  Identities=18%  Similarity=0.200  Sum_probs=8.2

Q ss_pred             hHhhcCCCCCcEEEeec
Q 016966          258 LEELKHLPNLTSLEVHV  274 (379)
Q Consensus       258 ~~~l~~l~~L~~L~l~~  274 (379)
                      ...+...+.|++|++..
T Consensus       125 a~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_         125 ANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHHHHCSSCCEEECCC
T ss_pred             HHHHHhCCCcCEEeCcC
Confidence            33444455555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.00  E-value=0.0002  Score=55.40  Aligned_cols=108  Identities=16%  Similarity=0.100  Sum_probs=73.7

Q ss_pred             hhhhhCCCceeEEEecCCC---------CCccccCCCCCcEEEeecCCCCC--c----ccccCcCCCcEEEeeCCcCc--
Q 016966          134 DNFFKSMIEVRVVNLTDMI---------LPSSLGLLSNLRTLSLCSCGLPD--I----SFVGYLKKLEILCLRGSDIV--  196 (379)
Q Consensus       134 ~~~~~~l~~L~~L~l~~~~---------lp~~i~~l~~L~~L~l~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~--  196 (379)
                      ..+..+.+.|+.|+++++.         +-..+...++|+.|++++|.+..  .    ..+...++++.+++++|.+.  
T Consensus        10 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~   89 (166)
T d1io0a_          10 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS   89 (166)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch
Confidence            3445567888888888743         33345677889999999998776  2    34556788999999998775  


Q ss_pred             ---ccchhhcCCCCCCEEeccCC--CCCcc----cChhhhCCCCCCcEEEecCCC
Q 016966          197 ---KLPVEVGELTWLKLLDLRDC--CFLKV----IPPNILSKLSHLEELYIGRES  242 (379)
Q Consensus       197 ---~lp~~~~~l~~L~~L~l~~~--~~~~~----~~~~~l~~l~~L~~L~l~~~~  242 (379)
                         .+...+...++|+.+++..+  .....    +... +...++|++|++..+.
T Consensus        90 g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~-L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          90 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCSS
T ss_pred             hHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHH-HHhCCCcCEEeCcCCC
Confidence               34456777888988777543  33221    2222 5677899999987654