Citrus Sinensis ID: 016968

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
MVSEKGGRDADGESLQALTRRVLLSHAAAGAAAGAIAATFMCPLDVIKTRLQVHGLPEGTHSGRRGSIIIISLQNILKNEGLKGLYRGLSPTLLALLPNWAVYFAVYERLKGLLRTHGDGNSQLSVGKNMIAAAGAGAATAITTNPLWVVKTRLQTQGMRSNVVPYKSILSALRRISHEEGMRGLYSGILPSLAGVSHVAIQFPAYERIKHYMAKKDDTDVDKLNPGSIMIASSIAKVLASVITYPHEVVRSRLQEQGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQSFLLRVLPPDKNHSQIQPKSGEHVKPQQKIDEAGAEENDTLRQSQIQSNKLTPSIPLGSKDQLTARH
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcHHHHcccHHHHHccccHHHccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHccccHHHHHHccHHHHHHHHHHcccccccccccccccccccc
cHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccHHHHccccHcHcccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccHcccHHHHHHHHHHHcccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccc
mvsekggrdadgeSLQALTRRVLLSHAAAGAAAGAIAATFMCPLDVIKTRlqvhglpegthsgrrGSIIIISLQNILKNEglkglyrglsptllallPNWAVYFAVYERLKGLLrthgdgnsqlsVGKNMIAAAgagaataittnPLWVVKTRLqtqgmrsnvvpYKSILSALRRISheegmrglysgilpslagvshvaiQFPAYERIKHymakkddtdvdklnpgsiMIASSIAKVLASVITYPHEVVRSRLQeqgqnrkvdvQYAGVVDCVKKVFqkegfpgfyrgcatnllrttpsaviTFTSYEIIQSFLLrvlppdknhsqiqpksgehvkpqqkideagaeendtlrqsqiqsnkltpsiplgskdqltarh
mvsekggrdadgesLQALTRRVLLSHAAAGAAAGAIAATFMCPLDVIKTRLQVHGLpegthsgrrgsIIIISLQNILKNEGLKGLYRGLSPTLLALLPNWAVYFAVYERLKGLLRTHGDGNSQLSVGKNMIAAAGAGAataittnpLWVVKTRlqtqgmrsnvvpyKSILSALRRISHEEGMRGLYSGILPSLAGVSHVAIQFPAYERIKHYMAKKDDTDVDKLNPGSIMIASSIAKVLASVITYPHEVVRSrlqeqgqnrkvdvqYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQSFLLRVLPPDKNHSqiqpksgehvkpqQKIDEAGAEENDTLRQsqiqsnkltpsiplgskdqltarh
MVSEKGGRDADGESLQALTRRVLLSHaaagaaagaiaaTFMCPLDVIKTRLQVHGLPEGTHsgrrgsiiiisLQNILKNEGLKGLYRGLSPTLLALLPNWAVYFAVYERLKGLLRTHGDGNSQLSVGKNMiaaagagaataittNPLWVVKTRLQTQGMRSNVVPYKSILSALRRISHEEGMRGLYSGILPSLAGVSHVAIQFPAYERIKHYMAKKDDTDVDKLNPGSIMIASSIAKVLASVITYPHEVVRSRLQEQGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQSFLLRVLPPDKNHSQIQPKSGEHVKPQQKIDEAGAEENDTLRQSQIQSNKLTPSIPLGSKDQLTARH
*****************LTRRVLLSHAAAGAAAGAIAATFMCPLDVIKTRLQVHGLPEGTHSGRRGSIIIISLQNILKNEGLKGLYRGLSPTLLALLPNWAVYFAVYERLKGLLRTHGDGNSQLSVGKNMIAAAGAGAATAITTNPLWVVKTRLQTQGMRSNVVPYKSILSALRRISHEEGMRGLYSGILPSLAGVSHVAIQFPAYERIKHYMAKKDDTDVDKLNPGSIMIASSIAKVLASVITYPHEVVRSRLQEQGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQSFLLRVL************************************************************
**********************LLSHAAAGAAAGAIAATFMCPLDVIKTRLQV***************IIISLQNILKNEGLKGLYRGLSPTLLALLPNWAVYFAVYERLKGLL***********VGKNMIAAAGAGAATAITTNPLWVVKTRL**************ILSALRRISHEEGMRGLYSGILPSLAGVSHVAIQFPAYERIKHYM************PGSIMIASSIAKVLASVITYPHEVVRSRL**************GVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQSFLL***************SGEHVKPQQKIDEAGAEENDTLRQSQ**********************
************ESLQALTRRVLLSHAAAGAAAGAIAATFMCPLDVIKTRLQVHGLPEGTHSGRRGSIIIISLQNILKNEGLKGLYRGLSPTLLALLPNWAVYFAVYERLKGLLRTHGDGNSQLSVGKNMIAAAGAGAATAITTNPLWVVKTRLQTQGMRSNVVPYKSILSALRRISHEEGMRGLYSGILPSLAGVSHVAIQFPAYERIKHYMAKKDDTDVDKLNPGSIMIASSIAKVLASVITYPHEVVRSRLQEQGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQSFLLRVLPPDK*****************KIDEAGAEENDTLRQSQIQSNKLTPSIPLGSKDQLTARH
MVSEKGGRDADGESLQALTRRVLLSHAAAGAAAGAIAATFMCPLDVIKTRLQVHGLPEGTHSGRRGSIIIISLQNILKNEGLKGLYRGLSPTLLALLPNWAVYFAVYERLKGLLRTHGDGNSQLSVGKNMIAAAGAGAATAITTNPLWVVKTRLQTQGMRSNVVPYKSILSALRRISHEEGMRGLYSGILPSLAGVSHVAIQFPAYERIKHYMAKKDDTDVDKLNPGSIMIASSIAKVLASVITYPHEVVRSRLQEQGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQSFLLRVLP***********************************************************
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MVSEKGGRDADGESLQALTRRVLLSHAAAGAAAGAIAATFMCPLDVIKTRLQVHGLPEGTHSGRRGSIIIISLQNILKNEGLKGLYRGLSPTLLALLPNWAVYFAVYERLKGLLRTHGDGNSQLSVGKNMIAAAGAGAATAITTNPLWVVKTRLQTQGMRSNVVPYKSILSALRRISHEEGMRGLYSGILPSLAGVSHVAIQFPAYERIKHYMAKKDDTDVDKLNPGSIMIASSIAKVLASVITYPHEVVRSRLQEQGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQSFLLRVLPPDKNHSQIQPKSGEHVKPQQKIDEAGAEENDTLRQSQIQSNKLTPSIPLGSKDQLTARH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query379 2.2.26 [Sep-21-2011]
Q8RWA5363 Nicotinamide adenine dinu yes no 0.865 0.903 0.658 1e-123
O22261312 Nicotinamide adenine dinu no no 0.741 0.900 0.643 1e-104
Q54FU9329 Mitochondrial substrate c yes no 0.759 0.875 0.428 2e-61
P39953335 Mitochondrial nicotinamid yes no 0.749 0.847 0.391 9e-55
P40556373 Mitochondrial nicotinamid no no 0.733 0.745 0.397 1e-53
Q54QN2306 Mitochondrial substrate c no no 0.765 0.947 0.369 7e-49
Q95J75315 Mitochondrial folate tran N/A no 0.788 0.949 0.368 1e-47
Q9H2D1315 Mitochondrial folate tran yes no 0.788 0.949 0.368 1e-47
Q8BMG8316 Mitochondrial folate tran yes no 0.751 0.901 0.383 2e-47
Q9P6L7361 Uncharacterized mitochond yes no 0.757 0.795 0.362 2e-44
>sp|Q8RWA5|NDT2_ARATH Nicotinamide adenine dinucleotide transporter 2, mitochondrial OS=Arabidopsis thaliana GN=NDT2 PE=1 SV=1 Back     alignment and function desciption
 Score =  443 bits (1139), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/337 (65%), Positives = 274/337 (81%), Gaps = 9/337 (2%)

Query: 39  TFMCPLDVIKTRLQVHGLPEGTHSGRRGSIIIISLQNILKNEGLKGLYRGLSPTLLALLP 98
           TF+CPLDVIKTRLQV GLPE   SG+RG +II SL+NI+K EG +G+YRGLSPT++ALLP
Sbjct: 33  TFVCPLDVIKTRLQVLGLPEAPASGQRGGVIITSLKNIIKEEGYRGMYRGLSPTIIALLP 92

Query: 99  NWAVYFAVYERLKGLLRTHGDGNSQLSVGKNMIAAAGAGAATAITTNPLWVVKTRLQTQG 158
           NWAVYF+VY +LK +L++  DG  +LS+G NMIAAAGAGAAT+I TNPLWVVKTRL TQG
Sbjct: 93  NWAVYFSVYGKLKDVLQS-SDG--KLSIGSNMIAAAGAGAATSIATNPLWVVKTRLMTQG 149

Query: 159 MRSNVVPYKSILSALRRISHEEGMRGLYSGILPSLAGVSHVAIQFPAYERIKHYMAKKDD 218
           +R  VVPYKS++SA  RI HEEG+RGLYSGILPSLAGVSHVAIQFPAYE+IK YMAK D+
Sbjct: 150 IRPGVVPYKSVMSAFSRICHEEGVRGLYSGILPSLAGVSHVAIQFPAYEKIKQYMAKMDN 209

Query: 219 TDVDKLNPGSIMIASSIAKVLASVITYPHEVVRSRLQEQGQNRKVDVQYAGVVDCVKKVF 278
           T V+ L+PG++ IASSIAKV+AS++TYPHEV+R++LQEQGQ R  + +Y+GV+DC+ KVF
Sbjct: 210 TSVENLSPGNVAIASSIAKVIASILTYPHEVIRAKLQEQGQIRNAETKYSGVIDCITKVF 269

Query: 279 QKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQSFLLRVLPPDKNHSQIQPKSGEHVKP 338
           + EG PG YRGCATNLLRTTPSAVITFT+YE++  F  +V+PP+ N S  + +  E    
Sbjct: 270 RSEGIPGLYRGCATNLLRTTPSAVITFTTYEMMLRFFRQVVPPETNRSDDRRREEER--- 326

Query: 339 QQKIDEAGAEENDT--LRQSQIQSNKL-TPSIPLGSK 372
           +  +   G EE+    LR+SQ QSNK+ TP IPLGSK
Sbjct: 327 KNLVSRRGEEEDKDLGLRESQTQSNKISTPHIPLGSK 363
Mediates the NAD(+) import into chloroplast. Favors the NAD(+)(in)/ADP or AMP(out) antiport exchange, but is also able to catalyze a low unidirectional transport (uniport) of NAD(+). Transports NAD(+), nicotinic acid adenine dinucleotide, nicotinamide mononucleotide, nicotinic acid mononucleotide, FAD, FMN, TTP, TDP, TMP, UTP, UDP, UMP, CTP, CDP, CMP, GTP, GDP, GMP, 3'-AMP, ATP, ADP, AND AMP, has low transport activity with cAMP, NADH and alpha-NAD(+), and has no activity with NADP(+), NADPH, nicotinamide, nicotinic acid, adenosine, thiamine mono- or diphosphate, inorganic phosphate, CoA, folate, NaCl, malate, malonate, citrate, fumarate, aspartate, glutamate, S-adenosylmethionine, lysine, arginine, and ornithine.
Arabidopsis thaliana (taxid: 3702)
>sp|O22261|NDT1_ARATH Nicotinamide adenine dinucleotide transporter 1, chloroplastic OS=Arabidopsis thaliana GN=NDT1 PE=1 SV=2 Back     alignment and function description
>sp|Q54FU9|MCFW_DICDI Mitochondrial substrate carrier family protein W OS=Dictyostelium discoideum GN=mcfW PE=3 SV=1 Back     alignment and function description
>sp|P39953|YEA6_YEAST Mitochondrial nicotinamide adenine dinucleotide transporter 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YEA6 PE=1 SV=1 Back     alignment and function description
>sp|P40556|YIA6_YEAST Mitochondrial nicotinamide adenine dinucleotide transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIA6 PE=1 SV=1 Back     alignment and function description
>sp|Q54QN2|MCFM_DICDI Mitochondrial substrate carrier family protein M OS=Dictyostelium discoideum GN=mcfM PE=3 SV=1 Back     alignment and function description
>sp|Q95J75|MFTC_MACFA Mitochondrial folate transporter/carrier OS=Macaca fascicularis GN=SLC25A32 PE=2 SV=1 Back     alignment and function description
>sp|Q9H2D1|MFTC_HUMAN Mitochondrial folate transporter/carrier OS=Homo sapiens GN=SLC25A32 PE=1 SV=2 Back     alignment and function description
>sp|Q8BMG8|MFTC_MOUSE Mitochondrial folate transporter/carrier OS=Mus musculus GN=Slc25a32 PE=2 SV=1 Back     alignment and function description
>sp|Q9P6L7|YKQ9_SCHPO Uncharacterized mitochondrial carrier C688.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC688.09 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query379
224111636373 predicted protein [Populus trichocarpa] 0.960 0.975 0.705 1e-141
255572144372 mitochondrial carrier protein, putative 0.965 0.983 0.728 1e-137
297737781373 unnamed protein product [Vitis vinifera] 0.899 0.914 0.687 1e-133
359472934372 PREDICTED: mitochondrial nicotinamide ad 0.897 0.913 0.687 1e-131
224099397369 predicted protein [Populus trichocarpa] 0.960 0.986 0.688 1e-127
356529020 581 PREDICTED: mitochondrial aspartate-gluta 0.952 0.621 0.685 1e-125
356571390363 PREDICTED: mitochondrial substrate carri 0.944 0.986 0.691 1e-125
147769928410 hypothetical protein VITISV_010118 [Viti 0.894 0.826 0.611 1e-122
18395659363 NAD+ transporter 2 [Arabidopsis thaliana 0.865 0.903 0.658 1e-122
357488535354 Mitochondrial substrate carrier family p 0.891 0.954 0.703 1e-121
>gi|224111636|ref|XP_002315927.1| predicted protein [Populus trichocarpa] gi|222864967|gb|EEF02098.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 263/373 (70%), Positives = 300/373 (80%), Gaps = 9/373 (2%)

Query: 12  GESLQALTRRVLLSHAAAGAAAGAIAATFMCPLDVIKTRLQVHGLPEGTHSGRRGSIIII 71
           GE+    + R L  HA AGA+AG IAATFMCPLDVIKTRLQVHGLP   +SG+ GSIII 
Sbjct: 5   GEASHKRSPRELACHAGAGASAGVIAATFMCPLDVIKTRLQVHGLPP--NSGQGGSIIIS 62

Query: 72  SLQNILKNEGLKGLYRGLSPTLLALLPNWAV-----YFAVYERLKGLLRTHGDGNSQLSV 126
           SL++I++ EG KGLYRGLSPT++ALLPNWAV     YF VYE+LKG+L ++ DG+S LSV
Sbjct: 63  SLKHIVRTEGFKGLYRGLSPTIMALLPNWAVSTAYVYFTVYEQLKGIL-SNEDGDSHLSV 121

Query: 127 GKNMIAAAGAGAATAITTNPLWVVKTRLQTQGMRSNVVPYKSILSALRRISHEEGMRGLY 186
           G NM+AAAGAGAAT+I TNPLWVVKTRLQTQGMR  VVPYKS+LSALRRI  EEGM GLY
Sbjct: 122 GANMVAAAGAGAATSIATNPLWVVKTRLQTQGMRPGVVPYKSVLSALRRIKQEEGMLGLY 181

Query: 187 SGILPSLAGVSHVAIQFPAYERIKHYMAKKDDTDVDKLNPGSIMIASSIAKVLASVITYP 246
           SGILPSLAG+SHVAIQFPAYE+IK YMAKK +T V+ L+PG + IASS++KVLASV+TYP
Sbjct: 182 SGILPSLAGISHVAIQFPAYEKIKCYMAKKGNTTVNNLSPGDVAIASSVSKVLASVLTYP 241

Query: 247 HEVVRSRLQEQGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFT 306
           HEVVRSRLQEQGQ R  +  YAGVVDC+KKVFQKEGF GFYRGCATNL+RTTPSAVITFT
Sbjct: 242 HEVVRSRLQEQGQLRNSEAHYAGVVDCIKKVFQKEGFRGFYRGCATNLMRTTPSAVITFT 301

Query: 307 SYEIIQSFLLRVLPPDKNHSQIQPKSGEHVKPQQKIDEAGAEENDTLRQSQIQSNKLTPS 366
           SYE+I  F   +L PDK HS  Q KS +H KPQQ+I       N    QSQ Q NK TPS
Sbjct: 302 SYEMIHKFFEGILLPDKKHSHAQTKSDDHAKPQQEIKGNVNSNNTVSGQSQTQPNK-TPS 360

Query: 367 IPLGSKDQLTARH 379
           IPLG+K+QL A H
Sbjct: 361 IPLGNKEQLPAAH 373

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255572144|ref|XP_002527012.1| mitochondrial carrier protein, putative [Ricinus communis] gi|223533647|gb|EEF35384.1| mitochondrial carrier protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297737781|emb|CBI26982.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359472934|ref|XP_002279691.2| PREDICTED: mitochondrial nicotinamide adenine dinucleotide transporter 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224099397|ref|XP_002311469.1| predicted protein [Populus trichocarpa] gi|222851289|gb|EEE88836.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356529020|ref|XP_003533095.1| PREDICTED: mitochondrial aspartate-glutamate transporter AGC1-like [Glycine max] Back     alignment and taxonomy information
>gi|356571390|ref|XP_003553860.1| PREDICTED: mitochondrial substrate carrier family protein W-like [Glycine max] Back     alignment and taxonomy information
>gi|147769928|emb|CAN76447.1| hypothetical protein VITISV_010118 [Vitis vinifera] Back     alignment and taxonomy information
>gi|18395659|ref|NP_564233.1| NAD+ transporter 2 [Arabidopsis thaliana] gi|75247587|sp|Q8RWA5.1|NDT2_ARATH RecName: Full=Nicotinamide adenine dinucleotide transporter 2, mitochondrial; Short=AtNDT2; AltName: Full=NAD(+) transporter 2 gi|20260666|gb|AAM13231.1| unknown protein [Arabidopsis thaliana] gi|30984592|gb|AAP42759.1| At1g25380 [Arabidopsis thaliana] gi|283482332|emb|CAR70089.1| mitochondrial nicotinamide adenine dinucleotide transporter 2 [Arabidopsis thaliana] gi|332192494|gb|AEE30615.1| NAD+ transporter 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357488535|ref|XP_003614555.1| Mitochondrial substrate carrier family protein W [Medicago truncatula] gi|355515890|gb|AES97513.1| Mitochondrial substrate carrier family protein W [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query379
TAIR|locus:2031240363 NDT2 "NAD+ transporter 2" [Ara 0.912 0.953 0.574 3.6e-105
TAIR|locus:2062002312 NDT1 "NAD+ transporter 1" [Ara 0.783 0.951 0.566 2.5e-90
DICTYBASE|DDB_G0290669329 mcfW "mitochondrial substrate 0.701 0.808 0.407 3.2e-49
SGD|S000000732335 YEA6 "Putative mitochondrial N 0.712 0.805 0.382 2.3e-46
CGD|CAL0003970366 orf19.1393 [Candida albicans ( 0.709 0.734 0.366 4.4e-45
SGD|S000001268373 YIA6 "Mitochondrial NAD+ trans 0.704 0.715 0.365 2.4e-44
FB|FBgn0033391360 CG8026 [Drosophila melanogaste 0.649 0.683 0.339 1.6e-43
POMBASE|SPAC227.03c371 SPAC227.03c "mitochondrial NAD 0.369 0.377 0.377 5.4e-42
UNIPROTKB|E1BSF1322 SLC25A32 "Uncharacterized prot 0.767 0.903 0.330 8.4e-42
UNIPROTKB|Q5ZJN5322 SLC25A32 "Uncharacterized prot 0.767 0.903 0.330 8.4e-42
TAIR|locus:2031240 NDT2 "NAD+ transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1041 (371.5 bits), Expect = 3.6e-105, P = 3.6e-105
 Identities = 204/355 (57%), Positives = 256/355 (72%)

Query:    21 RVLLSHXXXXXXXXXXXXTFMCPLDVIKTRLQVHGLPEGTHXXXXXXXXXXXLQNILKNE 80
             R + ++            TF+CPLDVIKTRLQV GLPE              L+NI+K E
Sbjct:    15 REVAANAGAGATAGAIAATFVCPLDVIKTRLQVLGLPEAPASGQRGGVIITSLKNIIKEE 74

Query:    81 GLKGLYRGLSPTLLALLPNWAVYFAVYERLKGLLRTHGDGNSQLSVGKNMXXXXXXXXXX 140
             G +G+YRGLSPT++ALLPNWAVYF+VY +LK +L++  DG  +LS+G NM          
Sbjct:    75 GYRGMYRGLSPTIIALLPNWAVYFSVYGKLKDVLQS-SDG--KLSIGSNMIAAAGAGAAT 131

Query:   141 XXXXNPLWVVKTRLQTQGMRSNVVPYKSILSALRRISHEEGMRGLYSGILPSLAGVSHVA 200
                 NPLWVVKTRL TQG+R  VVPYKS++SA  RI HEEG+RGLYSGILPSLAGVSHVA
Sbjct:   132 SIATNPLWVVKTRLMTQGIRPGVVPYKSVMSAFSRICHEEGVRGLYSGILPSLAGVSHVA 191

Query:   201 IQFPAYERIKHYMAKKDDTDVDKLNPGSIMIASSIAKVLASVITYPHEVVRSRLQEQGQN 260
             IQFPAYE+IK YMAK D+T V+ L+PG++ IASSIAKV+AS++TYPHEV+R++LQEQGQ 
Sbjct:   192 IQFPAYEKIKQYMAKMDNTSVENLSPGNVAIASSIAKVIASILTYPHEVIRAKLQEQGQI 251

Query:   261 RKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQSFLLRVLP 320
             R  + +Y+GV+DC+ KVF+ EG PG YRGCATNLLRTTPSAVITFT+YE++  F  +V+P
Sbjct:   252 RNAETKYSGVIDCITKVFRSEGIPGLYRGCATNLLRTTPSAVITFTTYEMMLRFFRQVVP 311

Query:   321 PDKNHSQIQPKSGEHVKPQQKIDEAGAEENDTL--RQSQIQSNKL-TPSIPLGSK 372
             P+ N S  + +  E    +  +   G EE+  L  R+SQ QSNK+ TP IPLGSK
Sbjct:   312 PETNRSDDRRREEER---KNLVSRRGEEEDKDLGLRESQTQSNKISTPHIPLGSK 363
GO:0005215 "transporter activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM
GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISS
GO:0006810 "transport" evidence=IEA;ISS
GO:0006839 "mitochondrial transport" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0043132 "NAD transport" evidence=IDA
GO:0051724 "NAD transporter activity" evidence=IDA
TAIR|locus:2062002 NDT1 "NAD+ transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0290669 mcfW "mitochondrial substrate carrier family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
SGD|S000000732 YEA6 "Putative mitochondrial NAD+ transporter" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0003970 orf19.1393 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
SGD|S000001268 YIA6 "Mitochondrial NAD+ transporter" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
FB|FBgn0033391 CG8026 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
POMBASE|SPAC227.03c SPAC227.03c "mitochondrial NAD transmembrane transporter (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|E1BSF1 SLC25A32 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJN5 SLC25A32 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RWA5NDT2_ARATHNo assigned EC number0.65870.86540.9035yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.X.115.1
hypothetical protein (356 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query379
PTZ00169300 PTZ00169, PTZ00169, ADP/ATP transporter on adenyla 3e-26
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 4e-26
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 5e-26
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 8e-26
PTZ00168259 PTZ00168, PTZ00168, mitochondrial carrier protein; 4e-15
PTZ00168259 PTZ00168, PTZ00168, mitochondrial carrier protein; 6e-10
PTZ00169300 PTZ00169, PTZ00169, ADP/ATP transporter on adenyla 2e-07
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information 
 Score =  106 bits (266), Expect = 3e-26
 Identities = 78/294 (26%), Positives = 142/294 (48%), Gaps = 14/294 (4%)

Query: 29  AGAAAGAIAATFMCPLDVIKTRLQVHGLPEGTHSGR--RGSIIIISLQNILKNEGLKGLY 86
            G  + AI+ T + P++ +K  +Q         SG+  R S I+   + + K +G+  L+
Sbjct: 13  MGGISAAISKTAVAPIERVKMLIQTQDSIPEIKSGKVPRYSGIVNCFRRVSKEQGVLSLW 72

Query: 87  RGLSPTLLALLPNWAVYFAVYERLKGLLRTHGDGNSQLS--VGKNMIAAAGAGAATAITT 144
           RG +  ++   P  A  FA  +  K +   + +  +      G N+++   AGA++ +  
Sbjct: 73  RGNTANVIRYFPTQAFNFAFKDYFKNMFPKY-NQKTDFWKFFGVNILSGGLAGASSLLIV 131

Query: 145 NPLWVVKTRLQTQGMRSNVVPYKSILSALRRISHEEGMRGLYSGILPSLAGV-SHVAIQF 203
            PL   +TRL +   +     +  +   L +IS + G   LY G   S+ G+  +    F
Sbjct: 132 YPLDFARTRLASDIGKGGDREFTGLFDCLMKISKQTGFLSLYQGFGVSVQGIIVYRGAYF 191

Query: 204 PAYERIKHYMAKKDDTDVDKLNPGSIMIASSIAKVLASVITYPHEVVRSRLQEQ-GQNRK 262
             Y+  K  +   +D + + L   ++  A ++  +LA +I+YP + VR R+    G+  K
Sbjct: 192 GLYDSAKA-LLFGNDKNTNILYKWAV--AQTVT-ILAGLISYPFDTVRRRMMMMSGRKAK 247

Query: 263 VDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSA-VITFTSYEIIQSFL 315
            ++QY G +DC KK+ + EG  GF++G   N+LR    A V+ F  Y+ +Q  L
Sbjct: 248 SEIQYTGTLDCWKKILKNEGLGGFFKGAWANVLRGAGGALVLVF--YDELQKLL 299

Length = 300
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional Back     alignment and domain information
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional Back     alignment and domain information
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 379
KOG0764299 consensus Mitochondrial FAD carrier protein [Energ 100.0
KOG0752320 consensus Mitochondrial solute carrier protein [En 100.0
KOG0757319 consensus Mitochondrial carrier protein - Rim2p/Mr 100.0
KOG0753317 consensus Mitochondrial fatty acid anion carrier p 100.0
PTZ00169300 ADP/ATP transporter on adenylate translocase; Prov 100.0
KOG0758297 consensus Mitochondrial carnitine-acylcarnitine ca 100.0
KOG0760302 consensus Mitochondrial carrier protein MRS3/4 [En 100.0
KOG0762311 consensus Mitochondrial carrier protein [Energy pr 100.0
KOG0759286 consensus Mitochondrial oxoglutarate/malate carrie 100.0
KOG0754294 consensus Mitochondrial oxodicarboxylate carrier p 100.0
PTZ00168259 mitochondrial carrier protein; Provisional 100.0
KOG0761361 consensus Mitochondrial carrier protein CGI-69 [En 100.0
KOG0751694 consensus Mitochondrial aspartate/glutamate carrie 100.0
KOG0768323 consensus Mitochondrial carrier protein PET8 [Ener 100.0
KOG0036463 consensus Predicted mitochondrial carrier protein 100.0
KOG0749298 consensus Mitochondrial ADP/ATP carrier proteins [ 100.0
KOG0766297 consensus Predicted mitochondrial carrier protein 100.0
KOG0769308 consensus Predicted mitochondrial carrier protein 100.0
KOG0770353 consensus Predicted mitochondrial carrier protein 100.0
KOG0765333 consensus Predicted mitochondrial carrier protein 100.0
KOG0756299 consensus Mitochondrial tricarboxylate/dicarboxyla 100.0
KOG0755320 consensus Mitochondrial oxaloacetate carrier prote 100.0
KOG0763301 consensus Mitochondrial ornithine transporter [Ene 100.0
KOG0750304 consensus Mitochondrial solute carrier protein [En 100.0
KOG0767333 consensus Mitochondrial phosphate carrier protein 100.0
KOG0752320 consensus Mitochondrial solute carrier protein [En 100.0
KOG0764299 consensus Mitochondrial FAD carrier protein [Energ 100.0
PTZ00169300 ADP/ATP transporter on adenylate translocase; Prov 100.0
KOG0753317 consensus Mitochondrial fatty acid anion carrier p 100.0
KOG0758297 consensus Mitochondrial carnitine-acylcarnitine ca 100.0
KOG0760302 consensus Mitochondrial carrier protein MRS3/4 [En 100.0
KOG0757319 consensus Mitochondrial carrier protein - Rim2p/Mr 100.0
KOG0768323 consensus Mitochondrial carrier protein PET8 [Ener 99.98
KOG0762311 consensus Mitochondrial carrier protein [Energy pr 99.97
KOG0754294 consensus Mitochondrial oxodicarboxylate carrier p 99.97
KOG0761361 consensus Mitochondrial carrier protein CGI-69 [En 99.97
PTZ00168259 mitochondrial carrier protein; Provisional 99.97
KOG0759286 consensus Mitochondrial oxoglutarate/malate carrie 99.96
KOG0770353 consensus Predicted mitochondrial carrier protein 99.96
KOG0750304 consensus Mitochondrial solute carrier protein [En 99.94
KOG0755320 consensus Mitochondrial oxaloacetate carrier prote 99.94
KOG0749298 consensus Mitochondrial ADP/ATP carrier proteins [ 99.94
KOG0767333 consensus Mitochondrial phosphate carrier protein 99.94
KOG0036463 consensus Predicted mitochondrial carrier protein 99.94
KOG0765333 consensus Predicted mitochondrial carrier protein 99.94
KOG0763301 consensus Mitochondrial ornithine transporter [Ene 99.94
KOG0769308 consensus Predicted mitochondrial carrier protein 99.93
KOG0756299 consensus Mitochondrial tricarboxylate/dicarboxyla 99.93
KOG0751694 consensus Mitochondrial aspartate/glutamate carrie 99.93
KOG0766297 consensus Predicted mitochondrial carrier protein 99.93
KOG1519297 consensus Predicted mitochondrial carrier protein 99.9
KOG2954427 consensus Mitochondrial carrier protein [General f 99.86
KOG2745321 consensus Mitochondrial carrier protein [General f 99.85
PF0015395 Mito_carr: Mitochondrial carrier protein; InterPro 99.78
PF0015395 Mito_carr: Mitochondrial carrier protein; InterPro 99.67
KOG2745321 consensus Mitochondrial carrier protein [General f 99.65
KOG1519297 consensus Predicted mitochondrial carrier protein 99.42
KOG2954427 consensus Mitochondrial carrier protein [General f 98.45
>KOG0764 consensus Mitochondrial FAD carrier protein [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-62  Score=420.00  Aligned_cols=290  Identities=45%  Similarity=0.727  Sum_probs=257.5

Q ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHHHHHhcCCCCCCCCCCCchhHHHHHHHHHHhhCcccccccchHhhhhhhhhhHHH
Q 016968           24 LSHAAAGAAAGAIAATFMCPLDVIKTRLQVHGLPEGTHSGRRGSIIIISLQNILKNEGLKGLYRGLSPTLLALLPNWAVY  103 (379)
Q Consensus        24 ~~~~~aG~~ag~~~~~i~~Pld~vk~r~Q~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~  103 (379)
                      +..+++|+++|+++.+++||||++|+|+|++.....  ....+.++++++++|+|.||++|||||+.|++++..+.|++|
T Consensus         6 ~~~~iaG~~aG~~stl~vhPlDl~K~R~qa~~g~~~--~~~~y~g~~~~~~tI~r~eG~rGLY~Gl~P~v~G~~~sWgiY   83 (299)
T KOG0764|consen    6 WEPLIAGLSAGFASTLVVHPLDLVKIRFQASDGRTS--LRPAYKGIFGALKTIFRSEGLRGLYRGLSPNVLGSAPSWGLY   83 (299)
T ss_pred             hhhhhhhhhhhhhhhhhccchhHhhhhhhhccCccc--cchhhccHHHHHHHHHHhhhHHHHhccCcHHHHhchhhHHHH
Confidence            445699999999999999999999999999833322  234455599999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhcHHHHHHHHHhccCCCCCCcCCCcHHHHHHHHHHhhchh
Q 016968          104 FAVYERLKGLLRTHGDGNSQLSVGKNMIAAAGAGAATAITTNPLWVVKTRLQTQGMRSNVVPYKSILSALRRISHEEGMR  183 (379)
Q Consensus       104 f~~y~~~~~~l~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~i~~~~G~~  183 (379)
                      |.+||.+|.++....+ ....+...++++++.||+++.++++|++|+|||++.+........|+++++++++|+++||++
T Consensus        84 F~~Y~~~K~~~~~~~~-~~~l~~~~~l~sa~~AGa~t~~lTNPIWVvKTRL~~Q~~~~~~~~Y~~~f~a~rki~k~EG~r  162 (299)
T KOG0764|consen   84 FFFYDFLKSFITEGFN-SGLLSVLANLSSAAEAGAATTILTNPIWVVKTRLMLQSKNVQSTAYKGMFDALRKIYKEEGFR  162 (299)
T ss_pred             HHHHHHHHHHHhcCCC-cccchHHHHHHHHHhhhHHHHHhcCCeEEEeehhhhhcccccccccccHHHHHHHHHHHHhHH
Confidence            9999999999966543 244688899999999999999999999999999999987776678999999999999999999


Q ss_pred             hhcccchhhhhhhhhHhhhHHHHHHHHHHHhccCCCCCC-CCCchhHHHHHhHHHHHHhhccCcHHHHHHHHHhccCCCC
Q 016968          184 GLYSGILPSLAGVSHVAIQFPAYERIKHYMAKKDDTDVD-KLNPGSIMIASSIAKVLASVITYPHEVVRSRLQEQGQNRK  262 (379)
Q Consensus       184 glyrG~~~~l~~~~~~~~~~~~ye~~k~~~~~~~~~~~~-~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~  262 (379)
                      |||+|+.|.++++.+.+++|.+||.+|.++.+..+...+ .+.....++.++++.++|+++|||++|+|+|||.++.   
T Consensus       163 gLY~GlVP~L~GvshgAiQF~~YE~lK~~~~~~~~~~~d~~l~n~~~i~~as~SKv~Ast~TYP~qVlRtRLQ~~~~---  239 (299)
T KOG0764|consen  163 GLYKGLVPGLLGVSHGAIQFPAYEELKLRKNRKQGRSTDNHLSNLDYIALASLSKVFASTLTYPHQVLRTRLQDQSD---  239 (299)
T ss_pred             HHHhhhhhHhhhhchhhhhhhhHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHhccc---
Confidence            999999999999999999999999999998655444333 3455566777779999999999999999999999864   


Q ss_pred             CccccCCHHHHHHHHHHhcCcccccccchhhHhhHhhhhhhhHHHHHHHHHHHHhhCC
Q 016968          263 VDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQSFLLRVLP  320 (379)
Q Consensus       263 ~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~~~~~i~~~~ye~~~~~l~~~~~  320 (379)
                       ...|+++++|++++|+.||++|||||+.++++|.+|.++|+|.+||.++++|..+..
T Consensus       240 -~~~~~~~~~lIk~t~r~eG~~GfYkG~~~nLvR~vPA~~ITF~vyEnv~~~L~~~~~  296 (299)
T KOG0764|consen  240 -NPRYRGVFDLIKKTWRNEGFRGFYKGLATNLVRTVPAACITFLVYENVKHFLVTHRT  296 (299)
T ss_pred             -CcccccHHHHHHHHHHHhchhhHHHHhHHHHhhccccceeeeehHHHHHHHHhcccc
Confidence             468999999999999999999999999999999999999999999999999976543

>KOG0752 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0757 consensus Mitochondrial carrier protein - Rim2p/Mrs12p [Energy production and conversion] Back     alignment and domain information
>KOG0753 consensus Mitochondrial fatty acid anion carrier protein/Uncoupling protein [Energy production and conversion] Back     alignment and domain information
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>KOG0758 consensus Mitochondrial carnitine-acylcarnitine carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0760 consensus Mitochondrial carrier protein MRS3/4 [Energy production and conversion] Back     alignment and domain information
>KOG0762 consensus Mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0759 consensus Mitochondrial oxoglutarate/malate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0754 consensus Mitochondrial oxodicarboxylate carrier protein [Energy production and conversion] Back     alignment and domain information
>PTZ00168 mitochondrial carrier protein; Provisional Back     alignment and domain information
>KOG0761 consensus Mitochondrial carrier protein CGI-69 [Energy production and conversion] Back     alignment and domain information
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion] Back     alignment and domain information
>KOG0768 consensus Mitochondrial carrier protein PET8 [Energy production and conversion] Back     alignment and domain information
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0749 consensus Mitochondrial ADP/ATP carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0766 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0769 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0770 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0765 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0756 consensus Mitochondrial tricarboxylate/dicarboxylate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0755 consensus Mitochondrial oxaloacetate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0763 consensus Mitochondrial ornithine transporter [Energy production and conversion] Back     alignment and domain information
>KOG0750 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0767 consensus Mitochondrial phosphate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0752 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0764 consensus Mitochondrial FAD carrier protein [Energy production and conversion] Back     alignment and domain information
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>KOG0753 consensus Mitochondrial fatty acid anion carrier protein/Uncoupling protein [Energy production and conversion] Back     alignment and domain information
>KOG0758 consensus Mitochondrial carnitine-acylcarnitine carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0760 consensus Mitochondrial carrier protein MRS3/4 [Energy production and conversion] Back     alignment and domain information
>KOG0757 consensus Mitochondrial carrier protein - Rim2p/Mrs12p [Energy production and conversion] Back     alignment and domain information
>KOG0768 consensus Mitochondrial carrier protein PET8 [Energy production and conversion] Back     alignment and domain information
>KOG0762 consensus Mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0754 consensus Mitochondrial oxodicarboxylate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0761 consensus Mitochondrial carrier protein CGI-69 [Energy production and conversion] Back     alignment and domain information
>PTZ00168 mitochondrial carrier protein; Provisional Back     alignment and domain information
>KOG0759 consensus Mitochondrial oxoglutarate/malate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0770 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0750 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0755 consensus Mitochondrial oxaloacetate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0749 consensus Mitochondrial ADP/ATP carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0767 consensus Mitochondrial phosphate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0765 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0763 consensus Mitochondrial ornithine transporter [Energy production and conversion] Back     alignment and domain information
>KOG0769 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0756 consensus Mitochondrial tricarboxylate/dicarboxylate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion] Back     alignment and domain information
>KOG0766 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG1519 consensus Predicted mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG2954 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG2745 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ] Back     alignment and domain information
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ] Back     alignment and domain information
>KOG2745 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG1519 consensus Predicted mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG2954 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query379
2lck_A303 Structure Of The Mitochondrial Uncoupling Protein 2 4e-17
2lck_A303 Structure Of The Mitochondrial Uncoupling Protein 2 1e-11
1okc_A297 Structure Of Mitochondrial AdpATP CARRIER IN COMPLE 6e-17
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2 Determined By Nmr Molecular Fragment Replacement Length = 303 Back     alignment and structure 
Iteration: 1

 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 115/278 (41%), Gaps = 15/278 (5%)
Query: 43  PLDVIKTRLQVHGLPEGTHXXXXXXXXXXXLQNIL---KNEGLKGLYRGLSPTLLALLPN 99
           PLD  K RLQ+ G  +G             L  IL   + EG + LY GL   L   +  
Sbjct: 21  PLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSF 80
Query: 100 WAVYFAVYERLKGLLRTHGDGNSQLSVGKNMXXXXXXXXXXXXXXNPLWVVKTRLQTQGM 159
            +V   +Y+ +K   + +  G+    +G  +               P  VVK R Q Q  
Sbjct: 81  ASVRIGLYDSVK---QFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQAR 137
Query: 160 RSNVVPYKSILSALRRISHEEGMRGLYSGILPSLAGVSHV-AIQFPAYERIKHYMAKKDD 218
                 Y+S + A + I+ EEG+RGL+ G  P++A  + V   +   Y+ IK  + K + 
Sbjct: 138 AGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL 197
Query: 219 TDVDKLNPGSIMIASSIAKVLASVITYPHEVVRSRLQEQGQNRKVDVQYAGVVDCVKKVF 278
              D   P     A   A    +VI  P +VV++R            QY     C   + 
Sbjct: 198 MTDDL--PCHFTSAFG-AGFCTTVIASPVDVVKTRYMNSALG-----QYHSAGHCALTML 249
Query: 279 QKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQSFLL 316
           +KEG   FY+G   + LR     V+ F +YE ++  L+
Sbjct: 250 RKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2 Determined By Nmr Molecular Fragment Replacement Length = 303 Back     alignment and structure
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH Carboxyatractyloside Length = 297 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query379
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 2e-88
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 3e-48
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 7e-44
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 5e-84
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
 Score =  267 bits (686), Expect = 2e-88
 Identities = 74/296 (25%), Positives = 132/296 (44%), Gaps = 10/296 (3%)

Query: 24  LSHAAAGAAAGAIAATFMCPLDVIKTRLQVHGLPEGTHSGRRGSIIIISLQNILKNEGLK 83
           L    AG  A AI+ T + P++ +K  LQV    +   + ++   II  +  I K +G  
Sbjct: 8   LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL 67

Query: 84  GLYRGLSPTLLALLPNWAVYFAVYERLKGLLRTHGDGNSQ--LSVGKNMIAAAGAGAATA 141
             +RG    ++   P  A+ FA  ++ K +     D + Q       N+ +   AGA + 
Sbjct: 68  SFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSL 127

Query: 142 ITTNPLWVVKTRLQTQ-GMRSNVVPYKSILSALRRISHEEGMRGLYSGILPSLAGVS-HV 199
               PL   +TRL    G  +    +  + + + +I   +G+RGLY G   S+ G+  + 
Sbjct: 128 CFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYR 187

Query: 200 AIQFPAYERIKHYMAKKDDTDVDKLNPGSIMIASSIAKVLASVITYPHEVVRSRLQEQGQ 259
           A  F  Y+  K  +    +      +     + +     +A +++YP + VR R+  Q  
Sbjct: 188 AAYFGVYDTAKGMLPDPKNV-----HIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSG 242

Query: 260 NRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQSFL 315
            +  D+ Y G VDC +K+ + EG   F++G  +N+LR    A      Y+ I+ F+
Sbjct: 243 RKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGA-FVLVLYDEIKKFV 297
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query379
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 100.0
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 100.0
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 100.0
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 100.0
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Back     alignment and structure
Probab=100.00  E-value=9.1e-57  Score=414.34  Aligned_cols=289  Identities=25%  Similarity=0.417  Sum_probs=240.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhcCCCCCCCCCCCchhHHHHHHHHHHhhCcccccccchHhhhhhhhhh
Q 016968           21 RVLLSHAAAGAAAGAIAATFMCPLDVIKTRLQVHGLPEGTHSGRRGSIIIISLQNILKNEGLKGLYRGLSPTLLALLPNW  100 (379)
Q Consensus        21 ~~~~~~~~aG~~ag~~~~~i~~Pld~vk~r~Q~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~  100 (379)
                      .+.+.++++|++||+++.++++|||+||+|+|++...........+.++++++++|+++||++|||||+.+++++.++..
T Consensus         5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~   84 (297)
T 1okc_A            5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ   84 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence            34678999999999999999999999999999986432211122344589999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCCCC--cchHHHHHHHHHHHHHHHHhhcHHHHHHHHHhccCCC-CCCcCCCcHHHHHHHHH
Q 016968          101 AVYFAVYERLKGLLRTHGDGNSQ--LSVGKNMIAAAGAGAATAITTNPLWVVKTRLQTQGMR-SNVVPYKSILSALRRIS  177 (379)
Q Consensus       101 ~~~f~~y~~~~~~l~~~~~~~~~--~~~~~~~~ag~~ag~~~~~~~~Pld~ik~r~q~~~~~-~~~~~~~~~~~~~~~i~  177 (379)
                      +++|.+||.+++.+....+....  .+....+++|++||+++.++++|+|+||+|+|++... .....|.++++++++|+
T Consensus        85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~  164 (297)
T 1okc_A           85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF  164 (297)
T ss_dssp             HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence            99999999999954332221111  2346789999999999999999999999999998532 22346899999999999


Q ss_pred             Hhhchhhhcccchhhhhh-hhhHhhhHHHHHHHHHHHhccCCCCCCCCCchhHHHHHhHHHHHHhhccCcHHHHHHHHHh
Q 016968          178 HEEGMRGLYSGILPSLAG-VSHVAIQFPAYERIKHYMAKKDDTDVDKLNPGSIMIASSIAKVLASVITYPHEVVRSRLQE  256 (379)
Q Consensus       178 ~~~G~~glyrG~~~~l~~-~~~~~~~~~~ye~~k~~~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~  256 (379)
                      ++||+++||||+.+++++ ++..+++|.+||.+|+.+.+..     .......+++|++||++++++++|+||||+|||+
T Consensus       165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~-----~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~  239 (297)
T 1okc_A          165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK-----NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMM  239 (297)
T ss_dssp             HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG-----CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC-----CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence            999999999999999995 6799999999999999764322     2345667899999999999999999999999999


Q ss_pred             ccCCCCCccccCCHHHHHHHHHHhcCcccccccchhhHhhHhhhhhhhHHHHHHHHHHH
Q 016968          257 QGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQSFL  315 (379)
Q Consensus       257 ~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~~~~~i~~~~ye~~~~~l  315 (379)
                      +.........|+++++|+++|+++||++|||||+.|+++|. +.++++|.+||.+|+++
T Consensus       240 ~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l  297 (297)
T 1okc_A          240 QSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV  297 (297)
T ss_dssp             TTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred             cCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence            86433334579999999999999999999999999999996 57899999999998754
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 379
d1okca_292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 1e-46
d1okca_292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 3e-23
d1okca_292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 8e-22
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Mitochondrial carrier
superfamily: Mitochondrial carrier
family: Mitochondrial carrier
domain: ADP,ATP carrier protein
species: Cow (Bos taurus), heart isoform t1 [TaxId: 9913]

 Score =  159 bits (401), Expect = 1e-46
 Identities = 69/289 (23%), Positives = 123/289 (42%), Gaps = 8/289 (2%)

Query: 24  LSHAAAGAAAGAIAATFMCPLDVIKTRLQVHGLPEGTHSGRRGSIIIISLQNILKNEGLK 83
           L    AG  A AI+ T + P++ +K  LQV    +   + ++   II  +  I K +G  
Sbjct: 7   LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL 66

Query: 84  GLYRGLSPTLLALLPNWAVYFAVYERLKGLLRTHGDGNSQ--LSVGKNMIAAAGAGAATA 141
             +RG    ++   P  A+ FA  ++ K +     D + Q       N+ +   AGA + 
Sbjct: 67  SFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSL 126

Query: 142 ITTNPLWVVKTRLQTQGMRSNVVP-YKSILSALRRISHEEGMRGLYSGILPSLAGVSHVA 200
               PL   +TRL     +      +  + + + +I   +G+RGLY G   S+ G+    
Sbjct: 127 CFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYR 186

Query: 201 IQFPAYERIKHYMAKKDDTDVDKLNPGSIMIASSIAKVLASVITYPHEVVRSRLQEQGQN 260
             +         M      D   ++     + +     +A +++YP + VR R+  Q   
Sbjct: 187 AAYFGVYDTAKGM----LPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGR 242

Query: 261 RKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYE 309
           +  D+ Y G VDC +K+ + EG   F++G  +N+LR    A      Y+
Sbjct: 243 KGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGA-FVLVLYD 290
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query379
d1okca_292 ADP,ATP carrier protein {Cow (Bos taurus), heart i 100.0
d1okca_292 ADP,ATP carrier protein {Cow (Bos taurus), heart i 99.97
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Mitochondrial carrier
superfamily: Mitochondrial carrier
family: Mitochondrial carrier
domain: ADP,ATP carrier protein
species: Cow (Bos taurus), heart isoform t1 [TaxId: 9913]

Probab=100.00  E-value=5.3e-52  Score=379.55  Aligned_cols=286  Identities=24%  Similarity=0.394  Sum_probs=247.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhcCCCCCCCCCCCchhHHHHHHHHHHhhCcccccccchHhhhhhhhh
Q 016968           20 RRVLLSHAAAGAAAGAIAATFMCPLDVIKTRLQVHGLPEGTHSGRRGSIIIISLQNILKNEGLKGLYRGLSPTLLALLPN   99 (379)
Q Consensus        20 ~~~~~~~~~aG~~ag~~~~~i~~Pld~vk~r~Q~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~   99 (379)
                      +-+++.++++|++||+++.+++||||+||+|+|++...........+.++++++++++++||+++||||+.+.+++..+.
T Consensus         3 ~~~~~~~~laG~~a~~i~~~~~~Pld~iK~r~Q~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~l~~~~~~   82 (292)
T d1okca_           3 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT   82 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCCCCcccccCCHHHHHHHHHHhhhhhhhhhccchhhhhhhcc
Confidence            45688999999999999999999999999999998765443333445568999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhhhhcCCCCCCC--cchHHHHHHHHHHHHHHHHhhcHHHHHHHHHhccCCCC-CCcCCCcHHHHHHHH
Q 016968          100 WAVYFAVYERLKGLLRTHGDGNSQ--LSVGKNMIAAAGAGAATAITTNPLWVVKTRLQTQGMRS-NVVPYKSILSALRRI  176 (379)
Q Consensus       100 ~~~~f~~y~~~~~~l~~~~~~~~~--~~~~~~~~ag~~ag~~~~~~~~Pld~ik~r~q~~~~~~-~~~~~~~~~~~~~~i  176 (379)
                      .+++|.+||.+++.+.........  ......+++|.+||+++.++++|+|++|+|+|.+.... ....|.+..++++.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~P~~~ik~r~~~~~~~~~~~~~~~~~~~~~~~~  162 (292)
T d1okca_          83 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKI  162 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHhcccccccccchhhhhhhhhhhhhhhhHHhhhhhhhhhheeeeccccccccccccccHHHHHHHh
Confidence            999999999999988776533222  23456788999999999999999999999999986432 234588999999999


Q ss_pred             HHhhchhhhcccchhhhh-hhhhHhhhHHHHHHHHHHHhccCCCCCCCCCchhHHHHHhHHHHHHhhccCcHHHHHHHHH
Q 016968          177 SHEEGMRGLYSGILPSLA-GVSHVAIQFPAYERIKHYMAKKDDTDVDKLNPGSIMIASSIAKVLASVITYPHEVVRSRLQ  255 (379)
Q Consensus       177 ~~~~G~~glyrG~~~~l~-~~~~~~~~~~~ye~~k~~~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q  255 (379)
                      +++||+++||+|+.++++ .+++.+++|..||.+|+.+.+..     .......+++++++++++++++||+||||+|||
T Consensus       163 ~~~~G~~~l~~G~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~-----~~~~~~~~~~~~~~~~~a~~~t~P~dvvktR~q  237 (292)
T d1okca_         163 FKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK-----NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMM  237 (292)
T ss_dssp             HHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG-----CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccchhhhhccccccccceehHhhhhhhhccchhhhccccc-----ccchHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            999999999999999999 57799999999999998664432     235667789999999999999999999999999


Q ss_pred             hccCCCCCccccCCHHHHHHHHHHhcCcccccccchhhHhhHhhhhhhhHHHHHHH
Q 016968          256 EQGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEII  311 (379)
Q Consensus       256 ~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~~~~~i~~~~ye~~  311 (379)
                      .+.........|.++++|+++|+++||++|||||+.|+++|.+| +++.|.+||.+
T Consensus       238 ~~~~~~~~~~~y~~~~~~~~~i~~~eG~~~lyrG~~~~~~r~i~-~~i~~~~ye~l  292 (292)
T d1okca_         238 MQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMG-GAFVLVLYDEI  292 (292)
T ss_dssp             TTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHHHH-HHHHHHHHHTC
T ss_pred             hcCCCCCCCCCCCCHHHHHHHHHHhcCcCcccccHHHHHHHHHH-HHhhhhHhhcC
Confidence            98876556678999999999999999999999999999999876 68999999963
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Back     information, alignment and structure