Citrus Sinensis ID: 016973

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRFQILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHcHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHcccccEEEEEEEccccccccEEEEEEcEEEEEEEEccccccEEEcccccccccccccEEEEEccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHccccccEEEEcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHccccccEEEEEEEcccccccEEEEcccEEEEEEEEcccccccEEcEcccccccccccEEEEEcEEEEEEEEccccccHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccEEEEccHHHccccEEEcccccccEEEEccc
Coil and Loop (DISEMBL)
MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEkgaslapgdsrFTNLIKECEERIAEETgelqkqpletgptnvvstnnvqpatnisstedVETVMDVSNeaamaaparpkyRFQILMHEFYQKPEEVVVTVFAkgipaknvtvdfgEQILSVsidvpgeeayhfqprlfgkiipakcryeVLSTKVEIRLAkaepiqwsslefskgavvpqrvnppsvsgsprptypsskptrvdWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVesngtvlstnwkevgskkvegsppdgmemkkwey
Flexible Loop (DISEMBL)
MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRaielepsmskAYWRKATACMKLEEYETAKVAlekgaslapgdsrFTNLIKECEERIAEEtgelqkqpletgptnvvstnnvqpatnisstedvETVMDVSNEAAMAAPARPKYRFQILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPqrvnppsvsgsprptypsskptrvdwDKLEAQVKKeekeekldgdaalNKFFQEIYADADEDTRRAMKKsfvesngtvlstnwkevgskkvegsppdgmemkkwey
Low Complexity Region (SEG)
MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRFQILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVkkeekeekLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY
Disordered region (IsUnstruct)
***********AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEK**********FTNLI*************************************************************PKYRFQILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFS*****************************************************LNKFFQEIYA*************************************************
Disordered Region (DISOPRED)
MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER*************************VQPATNISSTEDVETVMDVSNEAAMAAPARPKYRFQILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLE********************************************************NKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWE*
Disordered Region (DISEMBL)
********AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRFQILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVV***********************RVDWDKLEAQV*********DGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY
Disordered Region (DISPRO)
MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGEL**********NVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRFQILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEF*****************************RVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRFQILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	379	2.2.26 [Sep-21-2011]
Q9SUT5	358	Protein SGT1 homolog B OS	yes	no	0.936	0.991	0.630	1e-129
Q0JL44	367	Protein SGT1 homolog OS=O	yes	no	0.952	0.983	0.651	1e-127
Q9SUR9	350	Protein SGT1 homolog A OS	no	no	0.912	0.988	0.635	1e-121
Q2KIK0	338	Suppressor of G2 allele o	yes	no	0.839	0.940	0.351	6e-49
Q9CX34	336	Suppressor of G2 allele o	yes	no	0.836	0.943	0.326	2e-47
B0BN85	336	Suppressor of G2 allele o	yes	no	0.836	0.943	0.335	5e-47
Q9Y2Z0	365	Suppressor of G2 allele o	no	no	0.912	0.947	0.348	1e-46
Q55ED0	387	Protein SUGT1 homolog OS=	yes	no	0.498	0.488	0.424	9e-37
Q08446	395	Protein SGT1 OS=Saccharom	yes	no	0.588	0.564	0.310	5e-26
O59709	379	Glucose-insensitive trans	yes	no	0.501	0.501	0.356	2e-23

>sp|Q9SUT5|SGT1B_ARATH Protein SGT1 homolog B OS=Arabidopsis thaliana GN=SGT1B PE=1 SV=1

 Score =  461 bits (1187), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 241/382 (63%), Positives = 285/382 (74%), Gaps = 27/382 (7%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA +L +KAKEAF+DD F++A DLYS+AI++ PN A  FADRAQA+IK+ NFTEAV DAN
Sbjct: 1   MAKELAEKAKEAFLDDDFDVAVDLYSKAIDLDPNCAAFFADRAQANIKIDNFTEAVVDAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           +AIELEP+++KAY RK TACMKLEEY TAK ALEKGAS+AP + +F  +I EC+ RIAEE
Sbjct: 61  KAIELEPTLAKAYLRKGTACMKLEEYSTAKAALEKGASVAPNEPKFKKMIDECDLRIAEE 120

Query: 121 TGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRFQILM 180
             +L                 VQP      +    T    +   A   P        +  
Sbjct: 121 EKDL-----------------VQPMPPSLPS--SSTTPLATEADAPPVPIPAAPAKPMFR 161

Query: 181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKC 240
           HEFYQKPEE VVT+FAK +P +NVTV+FGEQILSV IDV GEEAYH QPRLFGKIIP KC
Sbjct: 162 HEFYQKPEEAVVTIFAKKVPKENVTVEFGEQILSVVIDVAGEEAYHLQPRLFGKIIPEKC 221

Query: 241 RYEVLSTKVEIRLAKAEPIQWSSLEFSKG-AVVPQRVNPPSVSG--SPRPTYPSSKPTRV 297
           R+EVLSTKVEIRLAKAE I W+SLE+ KG +V+P+    P+VS   S RP YPSSKP + 
Sbjct: 222 RFEVLSTKVEIRLAKAEIITWASLEYGKGQSVLPK----PNVSSALSQRPVYPSSKPAK- 276

Query: 298 DWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWK 357
           DWDKLEA+VKK+EK+EKLDGDAA+NKFF +IY+ ADED RRAM KSF ESNGTVLSTNWK
Sbjct: 277 DWDKLEAEVKKQEKDEKLDGDAAMNKFFSDIYSSADEDMRRAMNKSFAESNGTVLSTNWK 336

Query: 358 EVGSKKVEGSPPDGMEMKKWEY 379
           EVG+KKVE +PPDGME+KKWEY
Sbjct: 337 EVGTKKVESTPPDGMELKKWEY 358

Involved in plant innate immunity. Is essential for resistance conferred by multiple R genes recognizing different oomycete pathogen isolates like avirulent H.parasitica (downy mildew). Contributes additively with RAR1 to RPP5-dependent resistance. Not required for RPM1, RPS2, RPS4 and RPS5-mediated resistance. Functions as negative regulator of RPS5 accumulation by assisting its degradation. May be involved in heat shock response by associating with HSC70-1 chaperone. Required for the SCF(TIR1)-mediated degradation of Aux/IAA proteins, but maybe not for SCF(TIR1) assembly or binding to its Aux/IAA substrates. Probably required for SCF-mediated ubiquitination, by coupling HSP90 to SCF complex for ubiquitination of HSP90 client proteins. Required for the coronatine/jasmonic acid-mediated signal transduction pathway.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0JL44|SGT1_ORYSJ Protein SGT1 homolog OS=Oryza sativa subsp. japonica GN=SGT1 PE=1 SV=1

 Score =  454 bits (1169), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/379 (65%), Positives = 298/379 (78%), Gaps = 18/379 (4%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A+DLE KAK AF+DD FELA +LY+QAIE SP +AEL+ADRAQA IKL N+TEAVADAN+
Sbjct: 6   ASDLESKAKAAFVDDDFELAAELYTQAIEASPATAELYADRAQAHIKLGNYTEAVADANK 65

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121
           AIEL+PSM KAY RK  AC++LEEY+TAK ALE G S A GDSRFT L+KEC+ERIAEE 
Sbjct: 66  AIELDPSMHKAYLRKGAACIRLEEYQTAKAALELGYSFASGDSRFTRLMKECDERIAEEL 125

Query: 122 GELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRFQILMH 181
            E+  +  E G       + V+   + ++ ++   +++V          +PKYR     H
Sbjct: 126 SEVPVKKAEDGAAAPSVASFVEEKDDAANMDNTPPMVEV----------KPKYR-----H 170

Query: 182 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCR 241
           +FY    EVV+T+FAKG+PA+NV VDFGEQ+LSVSI+VPGEE YHFQPRLF KIIP K R
Sbjct: 171 DFYNSATEVVLTIFAKGVPAENVVVDFGEQMLSVSIEVPGEEPYHFQPRLFSKIIPEKSR 230

Query: 242 YEVLSTKVEIRLAKAEPIQWSSLEFSKG-AVVPQRVNPPSVSGSPRPTYPSSKPTRVDWD 300
           Y+VLSTKVEIRLAKAE I W+SL++ K    VPQ++ PP+ S   RP+YPSSK ++ DWD
Sbjct: 231 YQVLSTKVEIRLAKAEQITWTSLDYDKKPKAVPQKIIPPAESAQ-RPSYPSSK-SKKDWD 288

Query: 301 KLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVG 360
           KLEA+VKKEEKEEKL+GDAALNKFF++IY+DADED RRAM KSFVESNGTVLSTNWK+VG
Sbjct: 289 KLEAEVKKEEKEEKLEGDAALNKFFRDIYSDADEDMRRAMMKSFVESNGTVLSTNWKDVG 348

Query: 361 SKKVEGSPPDGMEMKKWEY 379
           SKKVEGSPPDGME+KKWEY
Sbjct: 349 SKKVEGSPPDGMELKKWEY 367

Involved in basal disease resistance to bacterial blight (X.oryzae). May act as positive regulator of basal defense. Probably required for SCF-mediated ubiquitination, by coupling HSP90 to SCF complex for ubiquitination of HSP90 client proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SUR9|SGT1A_ARATH Protein SGT1 homolog A OS=Arabidopsis thaliana GN=SGT1A PE=1 SV=1

 Score =  436 bits (1120), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/381 (63%), Positives = 291/381 (76%), Gaps = 35/381 (9%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA +L  KAKEAF+DD F++A DLYS+AI++ PN AE FADRAQA IKL++FTEAVADAN
Sbjct: 1   MAKELADKAKEAFVDDDFDVAVDLYSKAIDLDPNCAEFFADRAQAYIKLESFTEAVADAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           +AIEL+PS++KAY RK TACMKLEEY TAK ALEKGAS+ P +S+F  LI EC   I EE
Sbjct: 61  KAIELDPSLTKAYLRKGTACMKLEEYRTAKTALEKGASITPSESKFKKLIDECNFLITEE 120

Query: 121 TGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRFQILM 180
             +L  QP+   P+ + S+    P +           +DV+  A        KYR     
Sbjct: 121 EKDLV-QPV---PSTLPSSVTAPPVSE----------LDVTPTA--------KYR----- 153

Query: 181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKC 240
           HE+YQKPEEVVVTVFAKGIP +NV +DFGEQILSV I+VPGE+AY+ QPRLFGKIIP KC
Sbjct: 154 HEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPDKC 213

Query: 241 RYEVLSTKVEIRLAKAEPIQWSSLEFSKG-AVVPQRVNPPSVSG--SPRPTYPSSKPTRV 297
           +YEVLSTK+EI LAKA+ I W+SLE  KG AV+P+    P+VS   S RP YPSSK  + 
Sbjct: 214 KYEVLSTKIEICLAKADIITWASLEHGKGPAVLPK----PNVSSEVSQRPAYPSSKKVK- 268

Query: 298 DWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWK 357
           DWDKLEA+VKK+EK+EKL+GDAALNKFF+EIY +ADED RRAM KSFVESNGTVLSTNW+
Sbjct: 269 DWDKLEAEVKKQEKDEKLEGDAALNKFFREIYQNADEDMRRAMSKSFVESNGTVLSTNWQ 328

Query: 358 EVGSKKVEGSPPDGMEMKKWE 378
           EVG+K +E +PPDGME+KKWE
Sbjct: 329 EVGTKTIESTPPDGMELKKWE 349

Functions in R gene-mediated resistance, but participates in a lower extent than SGT1B to RPP5-mediated resistance. Not required for RPM1, RPS2, RPS4 and RPS5-mediated resistance. Probably required for SCF-mediated ubiquitination, by coupling HSP90 to SCF complex for ubiquitination of HSP90 client proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2KIK0|SUGT1_BOVIN Suppressor of G2 allele of SKP1 homolog OS=Bos taurus GN=SUGT1 PE=2 SV=1

 Score =  195 bits (495), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 129/367 (35%), Positives = 192/367 (52%), Gaps = 49/367 (13%)

Query: 11  EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS 70
           +A I+   + A +  ++A+E  P+ A  +  RA   I L N+++AVADA +++EL P+ S
Sbjct: 21  DALIEQDPQAALEELTKALEQKPDDAPYYCQRAYCHILLGNYSDAVADAKKSLELNPNSS 80

Query: 71  KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLE 130
            A  RK       + Y  A     +G  L   D+  T  IK C+E               
Sbjct: 81  TALLRKGICEYHEKNYAAALETFTEGQKLNSADADLTAWIKRCQE--------------- 125

Query: 131 TGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRFQILMHEFYQKPEEV 190
                  + N  QP  + S                    ++ KY       ++YQ   +V
Sbjct: 126 -------AQNGSQPEVSASQR---------------THQSKIKY-------DWYQTESQV 156

Query: 191 VVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVE 250
           ++T+  K +   +V V+F E+ LS  + +P  + Y  + RL   IIP +  ++VLSTK+E
Sbjct: 157 IITLMIKNVQKNDVNVEFSEKELSALVKLPSGDDYSLKLRLLHPIIPEQSTFKVLSTKIE 216

Query: 251 IRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEE 310
           I++ K E ++W  LE  +G V     NP       +  YPSS     +WDKL  ++K+EE
Sbjct: 217 IKMKKPEAVRWEKLE-GQGDVP----NPKPFIADVKNLYPSSSHYTRNWDKLVGEIKEEE 271

Query: 311 KEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPD 370
           K EKL+GDAALNK FQ+IY+D  ++ +RAM KSF+ES GTVLSTNW +VG +KVE +PPD
Sbjct: 272 KNEKLEGDAALNKLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPD 331

Query: 371 GMEMKKW 377
            ME KK+
Sbjct: 332 DMEWKKY 338

May play a role in ubiquitination and subsequent proteasomal degradation of target proteins.

Bos taurus (taxid: 9913)

>sp|Q9CX34|SUGT1_MOUSE Suppressor of G2 allele of SKP1 homolog OS=Mus musculus GN=Sugt1 PE=2 SV=3

 Score =  190 bits (482), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/367 (32%), Positives = 192/367 (52%), Gaps = 50/367 (13%)

Query: 11  EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS 70
           +A ID   + A +  ++A+E +P+ A+ +  RA   I L  + + +AD  +++EL P+  
Sbjct: 20  DALIDGDPQAALEELTKALEQNPDDAQYYCQRAYCHILLGKYRDGIADVKKSLELNPNNC 79

Query: 71  KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLE 130
            A  RK       ++Y +A     +G  L   D+ F   IK C+E             ++
Sbjct: 80  TALLRKGICEYHEKDYASALETFAEGQKLDSTDTNFDTWIKRCQE-------------IQ 126

Query: 131 TGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRFQILMHEFYQKPEEV 190
            G                             +E+ ++A  R + + +   +++YQ    V
Sbjct: 127 NG-----------------------------SESEVSASQRTQSKIK---YDWYQTESHV 154

Query: 191 VVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVE 250
           ++T+  K +   +V V F E+ LS  + +P  E Y  + RL   IIP +  ++VLSTK+E
Sbjct: 155 IITLMIKSVQKNDVRVGFSERELSALVKIPAGEDYSLKLRLLHPIIPEQSTFKVLSTKIE 214

Query: 251 IRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEE 310
           I++ K E ++W  LE       P++      +   +  YPSS     +WDKL  ++K+EE
Sbjct: 215 IKMKKPEAVRWEKLEGQGDEPTPKQF-----TADVKNMYPSSSHYTRNWDKLVGEIKEEE 269

Query: 311 KEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPD 370
           K EKL+GDAALNK FQ+IY+D  ++ +RAM KSF+ES GTVLSTNW +VG +KVE +PPD
Sbjct: 270 KNEKLEGDAALNKLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPD 329

Query: 371 GMEMKKW 377
            ME K++
Sbjct: 330 DMEWKQY 336

May play a role in ubiquitination and subsequent proteasomal degradation of target proteins.

Mus musculus (taxid: 10090)

>sp|B0BN85|SUGT1_RAT Suppressor of G2 allele of SKP1 homolog OS=Rattus norvegicus GN=Sugt1 PE=2 SV=1

 Score =  188 bits (478), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 123/367 (33%), Positives = 193/367 (52%), Gaps = 50/367 (13%)

Query: 11  EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS 70
           +A ID   + A +  ++A+E +P+ A+ +  RA   I L  + + +AD  +++EL P+ S
Sbjct: 20  DALIDGDPQAALEELTKALEQNPDDAQYYCQRAYCHILLGKYCDGIADVKKSLELNPNNS 79

Query: 71  KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLE 130
            A  RK       ++Y +A     +G  L   D+ F   IK C+E             ++
Sbjct: 80  TALLRKGICEYYEKDYASALETFAEGQKLDGTDTNFDIWIKRCQE-------------IQ 126

Query: 131 TGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRFQILMHEFYQKPEEV 190
            G                             +E  ++A  R + + +   +++YQ    V
Sbjct: 127 NG-----------------------------SEPEVSASQRTQSKIK---YDWYQTESHV 154

Query: 191 VVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVE 250
           ++T+  K +   +V VDF E+ LS  + +P  E    + RL   IIP +  ++VLSTK+E
Sbjct: 155 IITLMIKNVQKNDVRVDFSEKELSAVVKIPSGEDCSLKLRLLHPIIPEQSTFKVLSTKIE 214

Query: 251 IRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEE 310
           I++ K E ++W  LE  +G V      P   +   +  YPSS     +WDKL  ++K+EE
Sbjct: 215 IKMKKPEAVRWEKLE-GQGDVPA----PKQFTADVKNMYPSSSHYTRNWDKLVGEIKEEE 269

Query: 311 KEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPD 370
           K EKL+GDAALNK FQ+IY+D  ++ +RAM KSF+ES GTVLSTNW +VG +KVE +PPD
Sbjct: 270 KNEKLEGDAALNKLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPD 329

Query: 371 GMEMKKW 377
            ME K++
Sbjct: 330 DMEWKQY 336

May play a role in ubiquitination and subsequent proteasomal degradation of target proteins.

Rattus norvegicus (taxid: 10116)

>sp|Q9Y2Z0|SUGT1_HUMAN Suppressor of G2 allele of SKP1 homolog OS=Homo sapiens GN=SUGT1 PE=1 SV=3

 Score =  187 bits (476), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 128/367 (34%), Positives = 196/367 (53%), Gaps = 21/367 (5%)

Query: 11  EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS 70
           +A ID+  + A +  ++A+E  P+ A+ +  RA   I L N+  AVADA +++EL P+ S
Sbjct: 20  DALIDEDPQAALEELTKALEQKPDDAQYYCQRAYCHILLGNYCVAVADAKKSLELNPNNS 79

Query: 71  KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLE 130
            A  RK       + Y  A     +G  L          I+    R+    G+   Q L 
Sbjct: 80  TAMLRKGICEYHEKNYAAALETFTEGQKLD---------IETGFHRV----GQAGLQLLT 126

Query: 131 TGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRFQILMHEFYQKPEEV 190
           +     + +   Q A    +  +    +    EA   + +        + +++YQ   +V
Sbjct: 127 SSDPPALDS---QSAGITGADANFSVWIKRCQEAQNGSESEVWTHQSKIKYDWYQTESQV 183

Query: 191 VVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVE 250
           V+T+  K +   +V V+F E+ LS  + +P  E Y+ +  L   IIP +  ++VLSTK+E
Sbjct: 184 VITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLSTKIE 243

Query: 251 IRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEE 310
           I+L K E ++W  LE  +G V      P       +  YPSS P   +WDKL  ++K+EE
Sbjct: 244 IKLKKPEAVRWEKLE-GQGDVP----TPKQFVADVKNLYPSSSPYTRNWDKLVGEIKEEE 298

Query: 311 KEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPD 370
           K EKL+GDAALN+ FQ+IY+D  ++ +RAM KSF+ES GTVLSTNW +VG +KVE +PPD
Sbjct: 299 KNEKLEGDAALNRLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPD 358

Query: 371 GMEMKKW 377
            ME KK+
Sbjct: 359 DMEWKKY 365

May play a role in ubiquitination and subsequent proteasomal degradation of target proteins.

Homo sapiens (taxid: 9606)

>sp|Q55ED0|SUGT1_DICDI Protein SUGT1 homolog OS=Dictyostelium discoideum GN=sugt1 PE=2 SV=1

 Score =  154 bits (390), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 84/198 (42%), Positives = 118/198 (59%), Gaps = 9/198 (4%)

Query: 181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKC 240
           HE+YQ    VV+T+FAK + A N  ++   + +++S  +     + F+  LF  I+    
Sbjct: 198 HEWYQTETHVVLTIFAKFVTASNSKINLTSKSVNISFPLANGSEFLFEMDLFDPIVDKDS 257

Query: 241 RYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWD 300
                STKVEI++ K+  I+W +LEF+  +     ++  S S    P  PS   ++ DWD
Sbjct: 258 TIHYYSTKVEIKMKKSRAIKWDTLEFTDKSGPVGLMDQISSS----PAVPSPYASKKDWD 313

Query: 301 KLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVG 360
           KL       E EEKL+GD ALNK F++I++   ED +RAM KSF ES GTVLSTNW EVG
Sbjct: 314 KLP-----NEPEEKLEGDQALNKIFRDIFSKGSEDQQRAMMKSFTESGGTVLSTNWDEVG 368

Query: 361 SKKVEGSPPDGMEMKKWE 378
           SKKV G PP G+E K++E
Sbjct: 369 SKKVVGEPPKGLEFKQYE 386

May play a role in ubiquitination and subsequent proteasomal degradation of target proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q08446|SGT1_YEAST Protein SGT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SGT1 PE=1 SV=1

 Score =  119 bits (297), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 130/261 (49%), Gaps = 38/261 (14%)

Query: 145 ATNISSTEDVETVMDVSNEAAMAAPARP---------KYRFQILMHEFYQKPEEVVVTVF 195
           +TN  + + VE++ +  +  +  +P  P           +F+I   ++YQ    V +++F
Sbjct: 145 STNKHTIKPVESIENRGDNNSSHSPISPLKIETAPQESPKFKI---DWYQSSTSVTISLF 201

Query: 196 AKGIPAKNVTVDF-----GEQILSVSIDVP--GEEAYHFQPRLFGKIIPAKCRYEVLSTK 248
              +P     V+        + LS+S  VP  G E + +  +L  ++ P     ++   K
Sbjct: 202 TVNLPESKEQVNIYISPNDRRTLSISYQVPKSGSE-FQYNAKLSHEVDPKAVSLKIFPKK 260

Query: 249 VEIRLAKAEPIQWSSLEF------------SKGAVVPQRVNPPSVSGSPRPTYPSSKPTR 296
           +EI L+K +  QW  LE              K +    R+     +   R +YPSS   +
Sbjct: 261 LEITLSKIDSTQWKKLEEDILTESSRLSDEGKNSDSATRLLSAETASKERLSYPSSSKKK 320

Query: 297 VDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNW 356
           +DW KL+  + +E  EE    D+    FFQ++YA AD DT+RAM KSF+ESNGT LST+W
Sbjct: 321 IDWSKLD--IDEEADEEAGSADS----FFQKLYAGADPDTKRAMMKSFIESNGTALSTDW 374

Query: 357 KEVGSKKVEGSPPDGMEMKKW 377
           ++V    V+ SPP+GME K W
Sbjct: 375 EDVSKGTVKTSPPEGMEPKHW 395

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Required for both entry into S phase and kinetochore function. Also involved in cyclic AMP (cAMP) pathway, possibly by participating in the assembly or the conformational activation of specific multiprotein complexes.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O59709|GIT7_SCHPO Glucose-insensitive transcription protein 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=git7 PE=4 SV=2

 Score =  110 bits (275), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 109/205 (53%), Gaps = 15/205 (7%)

Query: 179 LMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPR-LFGKIIP 237
           + +++ Q    + + ++AK +  ++V++   +  L + I +     +      L+ +I+P
Sbjct: 184 IRYDWSQTSFSLNIDIYAKKVKDEDVSLLMEKNTLKIEIKLEDGSIFSLVLDPLYEEIVP 243

Query: 238 AKCRYEVLSTKVEIRLAK-AEPIQWSSLEFSKGA----VVPQRVNPPSVSGSPRPTYPSS 292
            K  +++ S+KVEI L K    I+W +L  S       V  +  N  S SG+       +
Sbjct: 244 EKSSFKLFSSKVEITLIKKVSEIKWEALVKSPANNSVNVYAKDSNHSSASGN-------T 296

Query: 293 KPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVL 352
           K    DWD L      EE E    G+AAL   FQ +Y +AD+DTRRAM KS+ ESNGT L
Sbjct: 297 KNKAKDWDSLAKLADLEEDEPT--GEAALANLFQNLYKNADDDTRRAMMKSYTESNGTAL 354

Query: 353 STNWKEVGSKKVEGSPPDGMEMKKW 377
           STNWK+V SK  E  PP GME KK+
Sbjct: 355 STNWKDVKSKTFETKPPQGMEPKKF 379

Involved in cyclic AMP (cAMP) pathway, possibly by participating in the assembly or the conformational activation of specific multiprotein complexes.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
390985902	361	SGT1 [Vitis pseudoreticulata]	0.952	1.0	0.730	1e-151
225464635	361	PREDICTED: protein SGT1 homolog [Vitis v	0.952	1.0	0.728	1e-150
255545142	361	chaperone binding protein, putative [Ric	0.952	1.0	0.720	1e-148
51511450	370	SGT1 [Solanum tuberosum]	0.970	0.994	0.696	1e-147
62467587	370	Sgt1b [Capsicum annuum]	0.970	0.994	0.701	1e-147
388509998	358	unknown [Lotus japonicus]	0.944	1.0	0.691	1e-145
356559728	359	PREDICTED: protein SGT1 homolog B-like [	0.947	1.0	0.696	1e-145
351725565	359	SGT1-2 [Glycine max] gi|208964720|gb|ACI	0.941	0.994	0.690	1e-143
29468339	370	SGT1 [Nicotiana benthamiana]	0.970	0.994	0.712	1e-143
238915472	360	SGT1 [Malus hupehensis]	0.949	1.0	0.709	1e-142

>gi|390985902|gb|AFM35697.1| SGT1 [Vitis pseudoreticulata]

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 277/379 (73%), Positives = 308/379 (81%), Gaps = 18/379 (4%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE +A +AFIDD+FELA DLY+QAIEI+PN AEL+ +R+QA+IKL NFTEAVADAN
Sbjct: 1   MASDLEIRAGKAFIDDHFELAVDLYNQAIEINPNHAELYVERSQANIKLNNFTEAVADAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           RAIEL+P MSKA+ RK TACMKLEEY+TAK A E GASLAPGDSRFTNLIKECEERIAEE
Sbjct: 61  RAIELDPLMSKAFLRKGTACMKLEEYQTAKAAFETGASLAPGDSRFTNLIKECEERIAEE 120

Query: 121 TGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRFQILM 180
           T  L KQ +   P  V S   V  A  +             ++  M   ++PKYR     
Sbjct: 121 TDGLPKQSVVQAPEAVESPETVVAAEKV-------------HQVPMVTASKPKYR----- 162

Query: 181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKC 240
           HE+YQKP+EVVVT+FAKGIP +NV VDFGEQILSVSIDVPG+ AYHFQPRLFGKIIP KC
Sbjct: 163 HEYYQKPQEVVVTIFAKGIPDENVVVDFGEQILSVSIDVPGDVAYHFQPRLFGKIIPDKC 222

Query: 241 RYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWD 300
           RYEVLSTK+EIRLAKAE I W+SLEFSK   VPQR+N  +   S RPTYPSSK   VDWD
Sbjct: 223 RYEVLSTKIEIRLAKAEEIHWTSLEFSKENTVPQRINVSTSVASQRPTYPSSKTRMVDWD 282

Query: 301 KLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVG 360
           KLEAQVKKEEKEEKLDGDAALNKFF++IY DADEDTRRAM+KSFVESNGTVLSTNWKEVG
Sbjct: 283 KLEAQVKKEEKEEKLDGDAALNKFFRDIYKDADEDTRRAMQKSFVESNGTVLSTNWKEVG 342

Query: 361 SKKVEGSPPDGMEMKKWEY 379
           SKKVEGSPPDGMEMKKWEY
Sbjct: 343 SKKVEGSPPDGMEMKKWEY 361

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464635|ref|XP_002276170.1| PREDICTED: protein SGT1 homolog [Vitis vinifera] gi|302143763|emb|CBI22624.3| unnamed protein product [Vitis vinifera]

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 276/379 (72%), Positives = 308/379 (81%), Gaps = 18/379 (4%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE +A +AFIDD+FELA DLY+QAIEI+PN AEL+ +R+QA+IKL NFTEAVADAN
Sbjct: 1   MASDLEIRAGKAFIDDHFELAVDLYTQAIEINPNHAELYVERSQANIKLNNFTEAVADAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           RAIEL+PSMSKA+ RK TACMKLEEY+TAK A E GASLAPGDSRFTNLIKECEE IAEE
Sbjct: 61  RAIELDPSMSKAFLRKGTACMKLEEYQTAKAAFETGASLAPGDSRFTNLIKECEECIAEE 120

Query: 121 TGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRFQILM 180
           T  L KQ +   P  V S   V  A  +             ++  M   ++PKYR     
Sbjct: 121 TDGLPKQSVVPAPEAVESPETVVAAEEV-------------HQVPMVTASKPKYR----- 162

Query: 181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKC 240
           HE+YQKP+EVVVT+FAKG+P +NV VDFGEQILSVSIDVPG+ AYHFQPRLFGKIIP KC
Sbjct: 163 HEYYQKPQEVVVTIFAKGVPDENVVVDFGEQILSVSIDVPGDVAYHFQPRLFGKIIPDKC 222

Query: 241 RYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWD 300
           RYEVLSTK+EIRLAKAE I W+SLEFSK   VPQR+N  +   S RPTYPSSK   VDWD
Sbjct: 223 RYEVLSTKIEIRLAKAEEIHWTSLEFSKENTVPQRINVSTSVASQRPTYPSSKTRMVDWD 282

Query: 301 KLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVG 360
           KLEAQVKKEEKEEKLDGDAALNKFF++IY DADEDTRRAM+KSFVESNGTVLSTNWKEVG
Sbjct: 283 KLEAQVKKEEKEEKLDGDAALNKFFRDIYKDADEDTRRAMQKSFVESNGTVLSTNWKEVG 342

Query: 361 SKKVEGSPPDGMEMKKWEY 379
           SKKVEGSPPDGMEMKKWEY
Sbjct: 343 SKKVEGSPPDGMEMKKWEY 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545142|ref|XP_002513632.1| chaperone binding protein, putative [Ricinus communis] gi|223547540|gb|EEF49035.1| chaperone binding protein, putative [Ricinus communis]

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 273/379 (72%), Positives = 311/379 (82%), Gaps = 18/379 (4%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE+KAKEAF+DD+F LA DL +QAI + PNSAEL+ADRAQA+IKL+N TEAVADAN
Sbjct: 1   MASDLERKAKEAFVDDHFALAADLLTQAIGLDPNSAELYADRAQANIKLRNLTEAVADAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           RAI+L+PSM+KAY RK TAC++LEEY+TAK ALE GASLAP D RFTNLIKECEE IA+E
Sbjct: 61  RAIQLDPSMAKAYLRKGTACIRLEEYQTAKAALEIGASLAPEDPRFTNLIKECEECIADE 120

Query: 121 TGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRFQILM 180
           T  L K   E  P NVV   +VQP            V D  ++  +  P++PKYR     
Sbjct: 121 TDNLPKHASE-APENVVPMEDVQP------------VNDHISKVPIVTPSKPKYR----- 162

Query: 181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKC 240
           HEFYQKPEEVVVT+FAKG+PA +V VDFGEQILSVSI+VPGE+AYHFQPRLFGKIIPAKC
Sbjct: 163 HEFYQKPEEVVVTIFAKGLPASSVAVDFGEQILSVSINVPGEDAYHFQPRLFGKIIPAKC 222

Query: 241 RYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWD 300
           RY VLSTKVE+ L KA+PI W+SLEFS    V QR N  S +GS RP+YPSSKP R DWD
Sbjct: 223 RYNVLSTKVEVHLVKADPIHWTSLEFSNEITVLQRANVSSGTGSHRPSYPSSKPKRTDWD 282

Query: 301 KLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVG 360
           +LEA+VKKEEK+EKLDGDAALNKFF++IY DADEDTRRAMKKSFVESNGTVLSTNWKEVG
Sbjct: 283 RLEAEVKKEEKDEKLDGDAALNKFFRDIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVG 342

Query: 361 SKKVEGSPPDGMEMKKWEY 379
           SKKVEGSPPDGMEM+KWEY
Sbjct: 343 SKKVEGSPPDGMEMRKWEY 361

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51511450|gb|AAU04979.1| SGT1 [Solanum tuberosum]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 264/379 (69%), Positives = 309/379 (81%), Gaps = 11/379 (2%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE +AKEAFIDD+FELA DLY+QAI +SP + ELFADRAQA+IKL  FTEAV DAN
Sbjct: 1   MASDLETRAKEAFIDDHFELAVDLYTQAITMSPKNPELFADRAQANIKLNYFTEAVVDAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           +AIEL+P+MSKAY R+  ACMKLEEY+TAK ALE GASLAPG+ RFT LIKEC+ERIAEE
Sbjct: 61  KAIELDPTMSKAYLRRGLACMKLEEYQTAKTALETGASLAPGELRFTKLIKECDERIAEE 120

Query: 121 TGELQKQPLETGPTNVVSTNNVQPATNIS-STEDVETVMDVSNEAAMAAPARPKYRFQIL 179
            GEL    ++    +VV+    + + N++ + ED +  +   N++   + A+PKYR    
Sbjct: 121 AGELPNLSVDKTSASVVAPPASELSDNVAIAPEDAQPTV---NQSHQGSAAKPKYR---- 173

Query: 180 MHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAK 239
            HEFYQKPEEVVVT+FAKGIPAKNV +DFGEQILSVSIDVPGEE Y FQPRLFGKI PAK
Sbjct: 174 -HEFYQKPEEVVVTIFAKGIPAKNVVIDFGEQILSVSIDVPGEETYSFQPRLFGKITPAK 232

Query: 240 CRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDW 299
           CRY+V+STK+EIRLAKAE + W+SLE++   VV QR  P   S +PRP+YPSSK   VDW
Sbjct: 233 CRYDVMSTKIEIRLAKAELLHWTSLEYTTEPVVVQR--PIVSSAAPRPSYPSSKLRNVDW 290

Query: 300 DKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEV 359
           DKLEA VKKEEK+EKLDGDAALNKFF++IY DADEDTRRAM KSFV SNGTVLSTNWKEV
Sbjct: 291 DKLEAAVKKEEKDEKLDGDAALNKFFRDIYQDADEDTRRAMMKSFVGSNGTVLSTNWKEV 350

Query: 360 GSKKVEGSPPDGMEMKKWE 378
           G+KKVEGSPPDGME+KKWE
Sbjct: 351 GTKKVEGSPPDGMELKKWE 369

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62467587|gb|AAX83943.1| Sgt1b [Capsicum annuum]

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 266/379 (70%), Positives = 312/379 (82%), Gaps = 11/379 (2%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE +AKEAFIDD+FELA DLY+QAI +SP + ELFADRAQA+IKL  FTEAV DAN
Sbjct: 1   MASDLETRAKEAFIDDHFELAVDLYTQAISLSPKNPELFADRAQANIKLNYFTEAVVDAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           +AIEL+P MSKAY RK  ACMKLEEY+TAK ALE GASLAPG+SRFT L+KEC+E IAEE
Sbjct: 61  KAIELDPYMSKAYLRKGLACMKLEEYQTAKAALETGASLAPGESRFTKLMKECDESIAEE 120

Query: 121 TGELQKQPLETGPTNVVSTNNVQPATNIS-STEDVETVMDVSNEAAMAAPARPKYRFQIL 179
            GEL    LE    N V+++  + + N++ +  D ++ + +S++ +    A+PKYR    
Sbjct: 121 AGELPNISLEKPSANAVASSASELSDNVAIAPRDPQSTVTLSHQESA---AKPKYR---- 173

Query: 180 MHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAK 239
            HEFYQKPEEVVVT+FAKGIPAKNV VDFGEQILSVSID+PG E Y FQPRLFGKI PAK
Sbjct: 174 -HEFYQKPEEVVVTIFAKGIPAKNVVVDFGEQILSVSIDLPGGETYSFQPRLFGKITPAK 232

Query: 240 CRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDW 299
           CRYEV+STK+EIRLAKAEP+ W+SL++++  VV  R  P   S +PRP+YPSSK   VDW
Sbjct: 233 CRYEVMSTKIEIRLAKAEPLHWTSLDYTREPVVIHR--PVVSSAAPRPSYPSSKLRNVDW 290

Query: 300 DKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEV 359
           DKLEAQVKKEEK+EKLDGDAALNKFF++IY DADEDTRRAM KSFVESNGTVLSTNWKEV
Sbjct: 291 DKLEAQVKKEEKDEKLDGDAALNKFFRDIYKDADEDTRRAMMKSFVESNGTVLSTNWKEV 350

Query: 360 GSKKVEGSPPDGMEMKKWE 378
           G+KKVEGSPPDGME+KKWE
Sbjct: 351 GTKKVEGSPPDGMELKKWE 369

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509998|gb|AFK43065.1| unknown [Lotus japonicus]

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 262/379 (69%), Positives = 306/379 (80%), Gaps = 21/379 (5%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE KAKEAF++D+FELA +L +QAI++ P  AEL+ADRAQA+IKL NFTEA+ADAN
Sbjct: 1   MASDLEAKAKEAFVEDHFELAVELLTQAIDVDPKHAELYADRAQANIKLNNFTEAIADAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           +AIEL PS+SKAY RK TACMKLEEY+TAK ALE GA+L+   SRF NLIKEC++ IAEE
Sbjct: 61  KAIELNPSLSKAYLRKGTACMKLEEYQTAKTALEMGATLSTDKSRFLNLIKECDKLIAEE 120

Query: 121 TGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRFQILM 180
           +  +  Q  E   T  VS  +VQP  +++             E  + A A+PKYR     
Sbjct: 121 SYPMPIQ--EKATTLDVSPKDVQPDKDLT-------------EQPIVAVAKPKYR----- 160

Query: 181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKC 240
           HEFYQKP+EVVVT+FAKG   +N+TVDFGEQILSVSI+VPGE+AY FQPRLFGKII ++C
Sbjct: 161 HEFYQKPDEVVVTIFAKGASKENITVDFGEQILSVSINVPGEDAYTFQPRLFGKIISSRC 220

Query: 241 RYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWD 300
           RYEVLSTK+EIRL KAEPI W+SLEF++   V QR N  SV GS RPTYPSSKP + DWD
Sbjct: 221 RYEVLSTKIEIRLGKAEPIHWNSLEFTREVAVAQRANISSVIGSQRPTYPSSKPKK-DWD 279

Query: 301 KLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVG 360
           KLEAQVKKEEK+EKLDGDAALNKFF+EIY DADEDTRRAMKKSFVESNGTVLSTNWKEVG
Sbjct: 280 KLEAQVKKEEKDEKLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVG 339

Query: 361 SKKVEGSPPDGMEMKKWEY 379
           +KKVEGSPPDGME++KWEY
Sbjct: 340 TKKVEGSPPDGMELRKWEY 358

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559728|ref|XP_003548149.1| PREDICTED: protein SGT1 homolog B-like [Glycine max]

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 264/379 (69%), Positives = 308/379 (81%), Gaps = 20/379 (5%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE KAKEAF++D+FELA DL SQAI + PN AEL+ADRAQA+IKL NFTEAVADAN
Sbjct: 1   MASDLEAKAKEAFVEDHFELAVDLLSQAIHLEPNKAELYADRAQANIKLNNFTEAVADAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           +AIEL  S+ KAY RK TACMKLEEYETAK ALE GASL+P +SRF  LIKEC++ IAEE
Sbjct: 61  KAIELNSSLPKAYLRKGTACMKLEEYETAKAALEVGASLSPDNSRFATLIKECDKLIAEE 120

Query: 121 TGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRFQILM 180
           +  +   P+    T   +T +  P       +DV+   D+  +  +A   +PKYR     
Sbjct: 121 SYTI---PIIEEKT---TTQDATP-------KDVQQQDDLLEKPTVAV-TKPKYR----- 161

Query: 181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKC 240
           HEFYQKP+++VVT+FAK IP +++TVDFGEQILSVSI+VPGE+ Y FQPRLFGKI+P+ C
Sbjct: 162 HEFYQKPDQLVVTIFAKKIPKESITVDFGEQILSVSINVPGEDVYAFQPRLFGKIVPSNC 221

Query: 241 RYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWD 300
           RYEVLSTK+EIRLAKAEPI W+SLEF+   VVPQRVN  SV+GS RP+YPSSK TR DWD
Sbjct: 222 RYEVLSTKIEIRLAKAEPIHWTSLEFTTDIVVPQRVNASSVTGSQRPSYPSSKQTR-DWD 280

Query: 301 KLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVG 360
           K+EAQVKKEEK+EKLDGDAALNKFF+EIY DADEDTRRAMKKSFVESNGTVLSTNWKEVG
Sbjct: 281 KIEAQVKKEEKDEKLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVG 340

Query: 361 SKKVEGSPPDGMEMKKWEY 379
           SKKVEGS PDGME+KKWEY
Sbjct: 341 SKKVEGSAPDGMELKKWEY 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725565|ref|NP_001236585.1| SGT1-2 [Glycine max] gi|208964720|gb|ACI31550.1| SGT1-2 [Glycine max]

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 263/381 (69%), Positives = 304/381 (79%), Gaps = 24/381 (6%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE KAKEAF++D+FELA DL SQAI + PN AE +ADRAQA+IKL NFTEAVADAN
Sbjct: 1   MASDLEAKAKEAFVEDHFELAVDLLSQAIHLEPNKAEFYADRAQANIKLNNFTEAVADAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           +AIEL PS+ KAY RK TACMKLEEYETAK ALE GASL+P +SRF  LIKEC++ IAEE
Sbjct: 61  KAIELNPSLPKAYLRKGTACMKLEEYETAKAALEVGASLSPDNSRFATLIKECDKLIAEE 120

Query: 121 TGELQKQPLETGPT--NVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRFQI 178
           +         T P      +T +V P       +DV+   D+  E       +PKYR   
Sbjct: 121 SY--------TPPIIEEKATTEDVTP-------KDVQQQDDLL-EKPTVTVTKPKYR--- 161

Query: 179 LMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPA 238
             HEFYQK ++VVVT+FAK IP +++TVDFGEQILSVSI+V GE+ Y FQPRLFGKIIP+
Sbjct: 162 --HEFYQKHDQVVVTIFAKKIPKESITVDFGEQILSVSINVTGEDTYVFQPRLFGKIIPS 219

Query: 239 KCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVD 298
            C+YEVLSTK+EIRLAKAEPI W+SLEF++  VV QRVN  SV+GS RP+YPSSK TR D
Sbjct: 220 NCQYEVLSTKIEIRLAKAEPIHWTSLEFTRDIVVQQRVNASSVTGSQRPSYPSSKQTR-D 278

Query: 299 WDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKE 358
           WDK+EAQVKKEEK+EKLDGDAALNKFF+EIY DADEDTRRAMKKSFVESNGTVLSTNWKE
Sbjct: 279 WDKIEAQVKKEEKDEKLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKE 338

Query: 359 VGSKKVEGSPPDGMEMKKWEY 379
           VG+KKVEGSPPDGME+KKWEY
Sbjct: 339 VGTKKVEGSPPDGMELKKWEY 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|29468339|gb|AAO85509.1| SGT1 [Nicotiana benthamiana]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 270/379 (71%), Positives = 315/379 (83%), Gaps = 11/379 (2%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE +AKEAFIDD+FELA DLY+QAI ++P +AELFADRAQA+IKL  FTEAV DAN
Sbjct: 1   MASDLETRAKEAFIDDHFELAVDLYTQAIAMTPKNAELFADRAQANIKLNYFTEAVVDAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           +AIEL+PSMSKAY RK  ACMKLEEY+TAK ALE GASLAP +SRFT LIKEC+ERIAEE
Sbjct: 61  KAIELDPSMSKAYLRKGLACMKLEEYQTAKAALETGASLAPAESRFTKLIKECDERIAEE 120

Query: 121 TGELQKQPLETGPTNVVSTNNVQPATNIS-STEDVETVMDVSNEAAMAAPARPKYRFQIL 179
            GEL  Q ++    NVV+    +   N++ + +D +  +++S + +    ARPKYR    
Sbjct: 121 AGELPNQSVDKTSGNVVAPPASESLDNVAVAPKDAQPTVNLSYQGSA---ARPKYR---- 173

Query: 180 MHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAK 239
            HEFYQKPEEVVVT+FAKGIPAKNV VDFGEQILSVSIDVPG+E Y FQPRLFGKI PAK
Sbjct: 174 -HEFYQKPEEVVVTIFAKGIPAKNVVVDFGEQILSVSIDVPGDETYSFQPRLFGKITPAK 232

Query: 240 CRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDW 299
           CRYEV+STK+EIRLAKAEP+ W+SLE+++ + V QR  P   S +PRP+YPSSK   VDW
Sbjct: 233 CRYEVMSTKIEIRLAKAEPLHWTSLEYTRASAVVQR--PNVSSDAPRPSYPSSKLRHVDW 290

Query: 300 DKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEV 359
           DKLEA+VKKEEK+EKLDGDAALNKFF++IY DADEDTRRAM KSFVESNGTVLSTNWKEV
Sbjct: 291 DKLEAEVKKEEKDEKLDGDAALNKFFRDIYKDADEDTRRAMMKSFVESNGTVLSTNWKEV 350

Query: 360 GSKKVEGSPPDGMEMKKWE 378
           G+KKVEGSPPDGME+KKWE
Sbjct: 351 GTKKVEGSPPDGMELKKWE 369

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238915472|gb|ACR78249.1| SGT1 [Malus hupehensis]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 269/379 (70%), Positives = 315/379 (83%), Gaps = 19/379 (5%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE++AKE F+DD+FELA DLY+QAI+++P +AEL++DRAQA+IK  N TEAVADAN
Sbjct: 1   MASDLEQRAKEVFMDDHFELAVDLYTQAIDLNPQNAELYSDRAQANIKAGNLTEAVADAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           +AIE +PS+ KAY+RK  AC+KLEEY+TAK ALE GA LAP ++RF +LIKEC+E+IAEE
Sbjct: 61  KAIEFDPSLYKAYFRKGIACIKLEEYQTAKAALETGAPLAPQETRFASLIKECDEKIAEE 120

Query: 121 TGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRFQILM 180
           T  L   P+E        T NV PA      +DVE V + SN+  +A   +PKYR     
Sbjct: 121 TIVLPTPPVEKD-----ITENVIPA------KDVEPVSEPSNQVTVAT-VKPKYR----- 163

Query: 181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKC 240
           HEFYQKPEEVVVT+FAKGIPAK+V VDFGEQILSVSIDV GE+ +HFQPRLFGKIIP KC
Sbjct: 164 HEFYQKPEEVVVTIFAKGIPAKDVHVDFGEQILSVSIDVAGEDTFHFQPRLFGKIIPEKC 223

Query: 241 RYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWD 300
           R++VLSTKVEIRLAKAEPIQW+SLEFSK ++VP R + P V G+PRP+YPSSKP R DWD
Sbjct: 224 RFDVLSTKVEIRLAKAEPIQWASLEFSKDSLVPFRGSGP-VVGAPRPSYPSSKPKR-DWD 281

Query: 301 KLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVG 360
           KLEAQVKKEEKEEKLDGDAALNKFFQ+IY DADEDTRRAM+KSFVESNGTVLSTN KEVG
Sbjct: 282 KLEAQVKKEEKEEKLDGDAALNKFFQDIYKDADEDTRRAMRKSFVESNGTVLSTNXKEVG 341

Query: 361 SKKVEGSPPDGMEMKKWEY 379
           +KKVEGS PDGMEMKKWE+
Sbjct: 342 NKKVEGSAPDGMEMKKWEF 360

Source: Malus hupehensis

Species: Malus hupehensis

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
UNIPROTKB|Q0JL44	367	SGT1 "Protein SGT1 homolog" [O	0.949	0.980	0.636	5.2e-120
TAIR|locus:2128278	358	SGT1B [Arabidopsis thaliana (t	0.881	0.932	0.512	1.6e-79
DICTYBASE|DDB_G0269292	387	sugt1 "SGS domain-contantaing	0.952	0.932	0.343	8.3e-51
ZFIN|ZDB-GENE-041114-56	322	sgut1 "SGT1, suppressor of G2	0.583	0.686	0.400	6e-50
UNIPROTKB|Q2KIK0	338	SUGT1 "Suppressor of G2 allele	0.862	0.967	0.332	7.3e-43
UNIPROTKB|Q9Y2Z0	365	SUGT1 "Suppressor of G2 allele	0.833	0.865	0.346	1.9e-42
MGI|MGI:1915205	336	Sugt1 "SGT1, suppressor of G2	0.807	0.910	0.320	5.9e-41
RGD|1307550	336	Sugt1 "SGT1, suppressor of G2	0.810	0.913	0.328	2e-40
CGD|CAL0004941	413	SGT1 [Candida albicans (taxid:	0.601	0.552	0.344	2.8e-38
UNIPROTKB|Q59X42	413	CaO19.11570 "Putative uncharac	0.601	0.552	0.344	2.8e-38

UNIPROTKB|Q0JL44 SGT1 "Protein SGT1 homolog" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1181 (420.8 bits), Expect = 5.2e-120, P = 5.2e-120
 Identities = 242/380 (63%), Positives = 290/380 (76%)

Query:     2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
             A+DLE KAK AF+DD FELA +LY+QAIE SP +AEL+ADRAQA IKL N+TEAVADAN+
Sbjct:     6 ASDLESKAKAAFVDDDFELAAELYTQAIEASPATAELYADRAQAHIKLGNYTEAVADANK 65

Query:    62 AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121
             AIEL+PSM KAY RK  AC++LEEY+TAK ALE G S A GDSRFT L+KEC+ERIAEE 
Sbjct:    66 AIELDPSMHKAYLRKGAACIRLEEYQTAKAALELGYSFASGDSRFTRLMKECDERIAEEL 125

Query:   122 GELQKQPLETGPTNVVSTNNVQPATNISS-TEDVETVMDVSNEAAMAAPARPKYRFQILM 180
              E+  +  E G            A +++S  E+ +   ++ N   M    +PKYR     
Sbjct:   126 SEVPVKKAEDGAA----------APSVASFVEEKDDAANMDNTPPMVE-VKPKYR----- 169

Query:   181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKC 240
             H+FY    EVV+T+FAKG+PA+NV VDFGEQ+LSVSI+VPGEE YHFQPRLF KIIP K 
Sbjct:   170 HDFYNSATEVVLTIFAKGVPAENVVVDFGEQMLSVSIEVPGEEPYHFQPRLFSKIIPEKS 229

Query:   241 RYEVLSTKVEIRLAKAEPIQWSSLEFSKGA-VVPQRVNPPSVSGSPRPTYPSSKPTRVDW 299
             RY+VLSTKVEIRLAKAE I W+SL++ K    VPQ++ PP+ S   RP+YPSSK ++ DW
Sbjct:   230 RYQVLSTKVEIRLAKAEQITWTSLDYDKKPKAVPQKIIPPAESAQ-RPSYPSSK-SKKDW 287

Query:   300 DKLEAQVXXXXXXXXLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEV 359
             DKLEA+V        L+GDAALNKFF++IY+DADED RRAM KSFVESNGTVLSTNWK+V
Sbjct:   288 DKLEAEVKKEEKEEKLEGDAALNKFFRDIYSDADEDMRRAMMKSFVESNGTVLSTNWKDV 347

Query:   360 GSKKVEGSPPDGMEMKKWEY 379
             GSKKVEGSPPDGME+KKWEY
Sbjct:   348 GSKKVEGSPPDGMELKKWEY 367

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

TAIR|locus:2128278 SGT1B [Arabidopsis thaliana (taxid:3702)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 188/367 (51%), Positives = 238/367 (64%)

Query:    36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV---- 91
             A+  A++A+ +    +F  AV   ++AI+L+P+ +  +  +A A +K++ +  A V    
Sbjct:     2 AKELAEKAKEAFLDDDFDVAVDLYSKAIDLDPNCAAFFADRAQANIKIDNFTEAVVDANK 61

Query:    92 ALEKGASLAPGDSRFTNLIKECEE----RIAEETG------ELQ-KQPLETGPTNVVSTN 140
             A+E   +LA    R      + EE    + A E G      E + K+ ++     +    
Sbjct:    62 AIELEPTLAKAYLRKGTACMKLEEYSTAKAALEKGASVAPNEPKFKKMIDECDLRIAEEE 121

Query:   141 N--VQP---ATNISSTEDVETVMDVSNEAAMAAPARPKYRFQILMHEFYQKPEEVVVTVF 195
                VQP   +   SST  + T  D       AAPA+P +R     HEFYQKPEE VVT+F
Sbjct:   122 KDLVQPMPPSLPSSSTTPLATEADAPPVPIPAAPAKPMFR-----HEFYQKPEEAVVTIF 176

Query:   196 AKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK 255
             AK +P +NVTV+FGEQILSV IDV GEEAYH QPRLFGKIIP KCR+EVLSTKVEIRLAK
Sbjct:   177 AKKVPKENVTVEFGEQILSVVIDVAGEEAYHLQPRLFGKIIPEKCRFEVLSTKVEIRLAK 236

Query:   256 AEPIQWSSLEFSKG-AVVPQRVNPPSVSG--SPRPTYPSSKPTRVDWDKLEAQVXXXXXX 312
             AE I W+SLE+ KG +V+P+    P+VS   S RP YPSSKP + DWDKLEA+V      
Sbjct:   237 AEIITWASLEYGKGQSVLPK----PNVSSALSQRPVYPSSKPAK-DWDKLEAEVKKQEKD 291

Query:   313 XXLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGM 372
               LDGDAA+NKFF +IY+ ADED RRAM KSF ESNGTVLSTNWKEVG+KKVE +PPDGM
Sbjct:   292 EKLDGDAAMNKFFSDIYSSADEDMRRAMNKSFAESNGTVLSTNWKEVGTKKVESTPPDGM 351

Query:   373 EMKKWEY 379
             E+KKWEY
Sbjct:   352 ELKKWEY 358

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:2000072 "regulation of defense response to fungus, incompatible interaction" evidence=IMP

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;IMP

GO:0009734 "auxin mediated signaling pathway" evidence=IMP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;IMP

GO:0019005 "SCF ubiquitin ligase complex" evidence=TAS

GO:0030163 "protein catabolic process" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0009408 "response to heat" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0010187 "negative regulation of seed germination" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

DICTYBASE|DDB_G0269292 sugt1 "SGS domain-contantaing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 135/393 (34%), Positives = 203/393 (51%)

Query:     7 KKAKEAFIDDYFELAYDLYSQA-IEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL 65
             K+    F+D+ ++ A   Y +A +E+S N+AE F  R+Q   KL N  EA++D N +I+L
Sbjct:     5 KEGNSYFVDEQYDEALKCYDKACLELS-NNAEAFFKRSQCHSKLSNLKEALSDINTSIKL 63

Query:    66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE----- 120
             + + SK Y +K   C +LEE++TA    EKG S+   +S F   I++ +  I        
Sbjct:    64 DSNNSKYYLKKGQLCFELEEFDTALKTFEKGQSIDSENSSFKTWIRKSKAEIQSNPTTTT 123

Query:   121 --------TGELQKQPLET--GPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPA 170
                     T     QP+ T   PT + +T+N    TN ++  +     + +N        
Sbjct:   124 TTTPTPTPTPTPAPQPVTTTTNPTPIPTTSNTTTTTNNNNNNNNNNNNNNNNNNTTTDST 183

Query:   171 RPKYRFQI----LMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYH 226
               K         + HE+YQ    VV+T+FAK + A N  ++   + +++S  +     + 
Sbjct:   184 TTKLPIPSSGNKVRHEWYQTETHVVLTIFAKFVTASNSKINLTSKSVNISFPLANGSEFL 243

Query:   227 FQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFS-KGAVVPQRVNPPSVSGSP 285
             F+  LF  I+         STKVEI++ K+  I+W +LEF+ K   V        +S SP
Sbjct:   244 FEMDLFDPIVDKDSTIHYYSTKVEIKMKKSRAIKWDTLEFTDKSGPVGLM---DQISSSP 300

Query:   286 RPTYPSSKPTRVDWDKLEAQVXXXXXXXXLDGDAALNKFFQEIYADADEDTRRAMKKSFV 345
                 PS   ++ DWDKL  +         L+GD ALNK F++I++   ED +RAM KSF 
Sbjct:   301 --AVPSPYASKKDWDKLPNEPEEK-----LEGDQALNKIFRDIFSKGSEDQQRAMMKSFT 353

Query:   346 ESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWE 378
             ES GTVLSTNW EVGSKKV G PP G+E K++E
Sbjct:   354 ESGGTVLSTNWDEVGSKKVVGEPPKGLEFKQYE 386

GO:0003674 "molecular_function" evidence=ND

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0000151 "ubiquitin ligase complex" evidence=ISS

ZFIN|ZDB-GENE-041114-56 sgut1 "SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 413 (150.4 bits), Expect = 6.0e-50, Sum P(2) = 6.0e-50
 Identities = 93/232 (40%), Positives = 129/232 (55%)

Query:   149 SSTEDVETVMD-VSNEAAMAAPARPK--YRFQILMHEFYQKPEEVVVTVFAKGIPAKNVT 205
             SS E+ +T M     E A   P +         + H++YQ   +V VT+  K    + V 
Sbjct:    99 SSVEEFQTWMQHCETEMATHIPNKTSDLQTTTHVKHDWYQTESQVAVTIMVKNAKKEGVI 158

Query:   206 VDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLE 265
             V FGE+ L+  + +P  E Y  +  L   I+P +  Y++LSTK+EI++ K E IQW  L+
Sbjct:   159 VSFGERELTAVVKLPSGEDYCLKVHLLHPIVPQQSTYKILSTKIEIKMKKTEAIQWEKLQ 218

Query:   266 FSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVXXXXXXXXLDGDAALNKFF 325
                G      V   + S      YPSS     +WDKL  ++        L+GDAALNK F
Sbjct:   219 ---GEETLSNVKHFTAS-----QYPSSSHYTRNWDKLVGEIKEEEKKENLEGDAALNKLF 270

Query:   326 QEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW 377
             Q+IY+D  +D RRAM KSF+ES GTVLSTNW +VG +KVE +PPD +E KK+
Sbjct:   271 QQIYSDGSDDVRRAMNKSFMESGGTVLSTNWIDVGKRKVEMNPPDDVEWKKY 322

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q2KIK0 SUGT1 "Suppressor of G2 allele of SKP1 homolog" [Bos taurus (taxid:9913)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 114/343 (33%), Positives = 180/343 (52%)

Query:    35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALE 94
             ++ LF   + A I+ Q+   A+ +  +A+E +P  +  Y ++A   + L  Y  A    +
Sbjct:    12 ASRLFRSFSDALIE-QDPQAALEELTKALEQKPDDAPYYCQRAYCHILLGNYSDAVADAK 70

Query:    95 KGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDV 154
             K   L P  S  T L+++    I E   +     LET  T     N+     +   T  +
Sbjct:    71 KSLELNPNSS--TALLRK---GICEYHEKNYAAALETF-TEGQKLNSA----DADLTAWI 120

Query:   155 ETVMDVSNEAAMAAPARPKYRFQILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILS 214
             +   +  N +     A  +     + +++YQ   +V++T+  K +   +V V+F E+ LS
Sbjct:   121 KRCQEAQNGSQPEVSASQRTHQSKIKYDWYQTESQVIITLMIKNVQKNDVNVEFSEKELS 180

Query:   215 VSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQ 274
               + +P  + Y  + RL   IIP +  ++VLSTK+EI++ K E ++W  LE  +G V P 
Sbjct:   181 ALVKLPSGDDYSLKLRLLHPIIPEQSTFKVLSTKIEIKMKKPEAVRWEKLE-GQGDV-P- 237

Query:   275 RVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVXXXXXXXXLDGDAALNKFFQEIYADADE 334
               NP       +  YPSS     +WDKL  ++        L+GDAALNK FQ+IY+D  +
Sbjct:   238 --NPKPFIADVKNLYPSSSHYTRNWDKLVGEIKEEEKNEKLEGDAALNKLFQQIYSDGSD 295

Query:   335 DTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW 377
             + +RAM KSF+ES GTVLSTNW +VG +KVE +PPD ME KK+
Sbjct:   296 EVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPDDMEWKKY 338

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q9Y2Z0 SUGT1 "Suppressor of G2 allele of SKP1 homolog" [Homo sapiens (taxid:9606)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 119/343 (34%), Positives = 184/343 (53%)

Query:    55 AVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE-- 112
             A+ +  +A+E +P  ++ Y ++A   + L  Y  A    +K   L P +S  T ++++  
Sbjct:    30 ALEELTKALEQKPDDAQYYCQRAYCHILLGNYCVAVADAKKSLELNPNNS--TAMLRKGI 87

Query:   113 CE--ER---IAEET-GELQKQPLETGPTNV------VSTNNVQPATNISST----EDVET 156
             CE  E+    A ET  E QK  +ETG   V      + T++  PA +  S      D   
Sbjct:    88 CEYHEKNYAAALETFTEGQKLDIETGFHRVGQAGLQLLTSSDPPALDSQSAGITGADANF 147

Query:   157 VMDVSN--EAAMAAPARPKYRFQILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILS 214
              + +    EA   + +        + +++YQ   +VV+T+  K +   +V V+F E+ LS
Sbjct:   148 SVWIKRCQEAQNGSESEVWTHQSKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELS 207

Query:   215 VSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQ 274
               + +P  E Y+ +  L   IIP +  ++VLSTK+EI+L K E ++W  LE  +G V P 
Sbjct:   208 ALVKLPSGEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLE-GQGDV-P- 264

Query:   275 RVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVXXXXXXXXLDGDAALNKFFQEIYADADE 334
                P       +  YPSS P   +WDKL  ++        L+GDAALN+ FQ+IY+D  +
Sbjct:   265 --TPKQFVADVKNLYPSSSPYTRNWDKLVGEIKEEEKNEKLEGDAALNRLFQQIYSDGSD 322

Query:   335 DTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW 377
             + +RAM KSF+ES GTVLSTNW +VG +KVE +PPD ME KK+
Sbjct:   323 EVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPDDMEWKKY 365

GO:0005634 "nucleus" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=TAS

GO:0000776 "kinetochore" evidence=TAS

GO:0007067 "mitosis" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0035872 "nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

MGI|MGI:1915205 Sugt1 "SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 104/324 (32%), Positives = 173/324 (53%)

Query:    55 AVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114
             A+ +  +A+E  P  ++ Y ++A   + L +Y      ++K   L P +   T L+++  
Sbjct:    30 ALEELTKALEQNPDDAQYYCQRAYCHILLGKYRDGIADVKKSLELNPNNC--TALLRK-- 85

Query:   115 ERIAEETGELQKQPLET-GPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPK 173
               I E   +     LET      + + +    T I   ++++      +E+ ++A  R +
Sbjct:    86 -GICEYHEKDYASALETFAEGQKLDSTDTNFDTWIKRCQEIQN----GSESEVSASQRTQ 140

Query:   174 YRFQILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFG 233
              + +   +++YQ    V++T+  K +   +V V F E+ LS  + +P  E Y  + RL  
Sbjct:   141 SKIK---YDWYQTESHVIITLMIKSVQKNDVRVGFSERELSALVKIPAGEDYSLKLRLLH 197

Query:   234 KIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSK 293
              IIP +  ++VLSTK+EI++ K E ++W  LE  +G        P   +   +  YPSS 
Sbjct:   198 PIIPEQSTFKVLSTKIEIKMKKPEAVRWEKLE-GQG----DEPTPKQFTADVKNMYPSSS 252

Query:   294 PTRVDWDKLEAQVXXXXXXXXLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLS 353
                 +WDKL  ++        L+GDAALNK FQ+IY+D  ++ +RAM KSF+ES GTVLS
Sbjct:   253 HYTRNWDKLVGEIKEEEKNEKLEGDAALNKLFQQIYSDGSDEVKRAMNKSFMESGGTVLS 312

Query:   354 TNWKEVGSKKVEGSPPDGMEMKKW 377
             TNW +VG +KVE +PPD ME K++
Sbjct:   313 TNWSDVGKRKVEINPPDDMEWKQY 336

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

RGD|1307550 Sugt1 "SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 106/323 (32%), Positives = 172/323 (53%)

Query:    55 AVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114
             A+ +  +A+E  P  ++ Y ++A   + L +Y      ++K   L P +S  T L+++  
Sbjct:    30 ALEELTKALEQNPDDAQYYCQRAYCHILLGKYCDGIADVKKSLELNPNNS--TALLRK-- 85

Query:   115 ERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKY 174
               I E   +     LET      +       T+ +    ++   ++ N +     A  + 
Sbjct:    86 -GICEYYEKDYASALET-----FAEGQKLDGTDTNFDIWIKRCQEIQNGSEPEVSASQRT 139

Query:   175 RFQILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGK 234
             + +I  +++YQ    V++T+  K +   +V VDF E+ LS  + +P  E    + RL   
Sbjct:   140 QSKI-KYDWYQTESHVIITLMIKNVQKNDVRVDFSEKELSAVVKIPSGEDCSLKLRLLHP 198

Query:   235 IIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKP 294
             IIP +  ++VLSTK+EI++ K E ++W  LE  +G V P    P   +   +  YPSS  
Sbjct:   199 IIPEQSTFKVLSTKIEIKMKKPEAVRWEKLE-GQGDV-PA---PKQFTADVKNMYPSSSH 253

Query:   295 TRVDWDKLEAQVXXXXXXXXLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLST 354
                +WDKL  ++        L+GDAALNK FQ+IY+D  ++ +RAM KSF+ES GTVLST
Sbjct:   254 YTRNWDKLVGEIKEEEKNEKLEGDAALNKLFQQIYSDGSDEVKRAMNKSFMESGGTVLST 313

Query:   355 NWKEVGSKKVEGSPPDGMEMKKW 377
             NW +VG +KVE +PPD ME K++
Sbjct:   314 NWSDVGKRKVEINPPDDMEWKQY 336

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

CGD|CAL0004941 SGT1 [Candida albicans (taxid:5476)]

 Score = 359 (131.4 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
 Identities = 85/247 (34%), Positives = 135/247 (54%)

Query:   134 TNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRFQILMHEFYQKPEEVVVT 193
             +N  ST++  PA   ++     T +DV N+ A   P   K+R      ++YQ  EEV++T
Sbjct:   183 SNQESTSSA-PAAQATTQAPKSTNVDVINKIA---PLNVKFR-----DDWYQSNEEVIIT 233

Query:   194 VFAKGIPAKNVTVDFGEQILSVSID--VPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEI 251
             ++AK +  + + V+F    +S+S       E  Y+  P LF +I+P++ +Y+V STK+EI
Sbjct:   234 IYAKKVNEEKLKVEFDTNSVSISFPSAAASEYNYYLDP-LFAEIVPSESKYKVYSTKLEI 292

Query:   252 RLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVXXXXX 311
              L K +  +W  LE      V    +           YP+S   +++W+  +        
Sbjct:   293 TLKKKDANKWPELEKQAVEGVTDNQDKDKKVDPSELVYPTSSKKKINWNNFKIDDDDKE- 351

Query:   312 XXXLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDG 371
                 +G+   N FF++I+ D DED+RRAM KS+V+SNGTVL+T+W E   K+ E  PPDG
Sbjct:   352 ----EGNE--NDFFRKIFKDVDEDSRRAMMKSYVQSNGTVLTTSWDEAKDKEFEVLPPDG 405

Query:   372 MEMKKWE 378
             ME+KKW+
Sbjct:   406 MEVKKWD 412

GO:0035690 "cellular response to drug" evidence=IMP

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

GO:0019933 "cAMP-mediated signaling" evidence=IEA

GO:0051382 "kinetochore assembly" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

UNIPROTKB|Q59X42 CaO19.11570 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 359 (131.4 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
 Identities = 85/247 (34%), Positives = 135/247 (54%)

Query:   134 TNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRFQILMHEFYQKPEEVVVT 193
             +N  ST++  PA   ++     T +DV N+ A   P   K+R      ++YQ  EEV++T
Sbjct:   183 SNQESTSSA-PAAQATTQAPKSTNVDVINKIA---PLNVKFR-----DDWYQSNEEVIIT 233

Query:   194 VFAKGIPAKNVTVDFGEQILSVSID--VPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEI 251
             ++AK +  + + V+F    +S+S       E  Y+  P LF +I+P++ +Y+V STK+EI
Sbjct:   234 IYAKKVNEEKLKVEFDTNSVSISFPSAAASEYNYYLDP-LFAEIVPSESKYKVYSTKLEI 292

Query:   252 RLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVXXXXX 311
              L K +  +W  LE      V    +           YP+S   +++W+  +        
Sbjct:   293 TLKKKDANKWPELEKQAVEGVTDNQDKDKKVDPSELVYPTSSKKKINWNNFKIDDDDKE- 351

Query:   312 XXXLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDG 371
                 +G+   N FF++I+ D DED+RRAM KS+V+SNGTVL+T+W E   K+ E  PPDG
Sbjct:   352 ----EGNE--NDFFRKIFKDVDEDSRRAMMKSYVQSNGTVLTTSWDEAKDKEFEVLPPDG 405

Query:   372 MEMKKWE 378
             ME+KKW+
Sbjct:   406 MEVKKWD 412

GO:0035690 "cellular response to drug" evidence=IMP

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0JL44	SGT1_ORYSJ	No assigned EC number	0.6517	0.9525	0.9836	yes	no
B0BN85	SUGT1_RAT	No assigned EC number	0.3351	0.8364	0.9434	yes	no
Q9CX34	SUGT1_MOUSE	No assigned EC number	0.3269	0.8364	0.9434	yes	no
Q9SUT5	SGT1B_ARATH	No assigned EC number	0.6308	0.9366	0.9916	yes	no
Q2KIK0	SUGT1_BOVIN	No assigned EC number	0.3514	0.8390	0.9408	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00037765001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (361 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00038500001	SubName- Full=Chromosome chr16 scaffold_94, whole genome shotgun sequence; (178 aa)					•	•	•		0.947
	GSVIVG00021159001	SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (792 aa)					•	•			0.810
	GSVIVG00002550001	SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (508 aa)					•	•			0.808
	GSVIVG00014401001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (806 aa)					•	•			0.803
	GSVIVG00033437001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (207 aa)						•			0.800
	GSVIVG00029085001	SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (914 aa)						•			0.800
	GSVIVG00016524001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (903 aa)						•			0.800
	GSVIVG00019623001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (914 aa)					•		•	•	0.409

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	379
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	0.0
pfam05002	78	pfam05002, SGS, SGS domain	7e-34
cd06466	84	cd06466, p23_CS_SGT1_like, p23_like domain similar	2e-32
COG5091	368	COG5091, SGT1, Suppressor of G2 allele of skp1 and	1e-29
cd06463	84	cd06463, p23_like, Proteins containing this p23_li	1e-21
pfam04969	78	pfam04969, CS, CS domain	4e-20
cd06489	84	cd06489, p23_CS_hSgt1_like, p23_like domain simila	1e-18
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-16
cd06488	87	cd06488, p23_melusin_like, p23_like domain similar	1e-13
cd06468	92	cd06468, p23_CacyBP, p23_like domain found in prot	4e-10
pfam13414	69	pfam13414, TPR_11, TPR repeat	4e-09
cd00298	80	cd00298, ACD_sHsps_p23-like, This domain family in	6e-09
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-08
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-07
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	1e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-05
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	2e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	7e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-04
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	1e-04
pfam08959	288	pfam08959, DUF1872, Domain of unknown function (DU	7e-04
cd06490	87	cd06490, p23_NCB5OR, p23_like domain found in NAD(	0.001
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.004
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.004

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score =  596 bits (1538), Expect = 0.0
 Identities = 264/379 (69%), Positives = 301/379 (79%), Gaps = 23/379 (6%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA DLE KAKEAF+DD F LA DLY+QAI++ PN+AEL+ADRAQA+IKL NFTEAVADAN
Sbjct: 1   MAKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           +AIEL+PS++KAY RK TACMKLEEY+TAK ALEKGASLAPGDSRFT LIKEC+E+IAEE
Sbjct: 61  KAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120

Query: 121 TGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRFQILM 180
             +L +      P                S+     V +      +  P++PKYR     
Sbjct: 121 EKDLVQPVPSDLP----------------SSVTAPPVEEADA-TPVVPPSKPKYR----- 158

Query: 181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKC 240
           HEFYQKPEEVVVTVFAKG+PA+NV VDFGEQILSV I+VPGE+AYH QPRLFGKIIP KC
Sbjct: 159 HEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDKC 218

Query: 241 RYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWD 300
           +YEVLSTK+EIRLAKAEPI W+SLE+ KG  V  + N  S   S RP YPSSK  + DWD
Sbjct: 219 KYEVLSTKIEIRLAKAEPITWASLEYGKGPAVLPKPNVSS-EVSQRPAYPSSKKKKDDWD 277

Query: 301 KLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVG 360
           KLEA+VKKEEK+EKLDGDAALNKFF+EIY +ADEDTRRAM KSFVESNGTVLSTNWKEVG
Sbjct: 278 KLEAEVKKEEKDEKLDGDAALNKFFREIYQNADEDTRRAMMKSFVESNGTVLSTNWKEVG 337

Query: 361 SKKVEGSPPDGMEMKKWEY 379
           SKK+EGSPPDGME+KKWEY
Sbjct: 338 SKKIEGSPPDGMELKKWEY 356

Length = 356

>gnl|CDD|218373 pfam05002, SGS, SGS domain

 Score =  120 bits (302), Expect = 7e-34
 Identities = 51/81 (62%), Positives = 62/81 (76%), Gaps = 4/81 (4%)

Query: 297 VDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNW 356
            DWDKL     KE+++++ D  AALN FF+++Y D D+DT+RAM KSF ESNGTVLSTNW
Sbjct: 2   KDWDKL----TKEDEDDEEDPSAALNNFFKKLYKDGDDDTKRAMMKSFTESNGTVLSTNW 57

Query: 357 KEVGSKKVEGSPPDGMEMKKW 377
            EVG KKVE  PP+GME KKW
Sbjct: 58  DEVGKKKVETKPPEGMEAKKW 78

This domain was thought to be unique to the SGT1-like proteins, but is also found in calcyclin binding proteins. Length = 78

>gnl|CDD|107223 cd06466, p23_CS_SGT1_like, p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)

 Score =  116 bits (293), Expect = 2e-32
 Identities = 41/84 (48%), Positives = 53/84 (63%)

Query: 182 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCR 241
           ++YQ    V VT++AK +  ++V V+F EQ LSVSI +PG   Y  +  LFG I P + +
Sbjct: 1   DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSK 60

Query: 242 YEVLSTKVEIRLAKAEPIQWSSLE 265
             VL TKVEI L KAEP  W SLE
Sbjct: 61  VSVLPTKVEITLKKAEPGSWPSLE 84

Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies suggest that the interaction of hSgt1 with Hsp90 and Hsp70 may be regulated by S100A6 in a Ca2+ dependent fashion. This group also includes the p23_like domains of Melusin and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). Melusin is a vertebrate protein which interacts with two splice variants of beta1 integrin, and NCB5OR plays a part in maintaining viable pancreatic beta cells. Length = 84

>gnl|CDD|227422 COG5091, SGT1, Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

 Score =  117 bits (293), Expect = 1e-29
 Identities = 60/243 (24%), Positives = 102/243 (41%), Gaps = 14/243 (5%)

Query: 138 STNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRFQILMHEFYQKPEEVVVTVFAK 197
           + + ++P  +I +  D  +     +   +    +   + +I    +          +F  
Sbjct: 137 NKHTIKPVESIENRGDNNSSHSPISPLKIETAPQESPKMEI---AYDFSETSDTAIIFIY 193

Query: 198 GIPAKNVTVD--FGEQILSVSIDVP-GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLA 254
             P  +  V        LS+S               L+ ++ P     +  S +VE+ L 
Sbjct: 194 RPPVGDEQVSPVLEGNTLSISYQPRRLRLWNDITISLYKEVYPDIRSIKSFSKRVEVHLR 253

Query: 255 KAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEK 314
           K E ++W  L    G    +         +     P S   + DW +L     ++  +E 
Sbjct: 254 KVEMVRWGGLN---GRPADESSRLSDEGKNSDSATPKSSKKQDDWKELM---VEDSGDE- 306

Query: 315 LDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEM 374
            +  + ++  FQ++Y  AD+DTRRAM KSF ESNGT LST+W +V SK +   PP+GME 
Sbjct: 307 -ENPSVMDSLFQKLYQRADDDTRRAMMKSFYESNGTALSTDWDDVKSKTITTEPPEGMEP 365

Query: 375 KKW 377
           K W
Sbjct: 366 KHW 368

Length = 368

>gnl|CDD|107220 cd06463, p23_like, Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

 Score = 87.7 bits (218), Expect = 1e-21
 Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 183 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRY 242
           +YQ  +EV +T+  K +  K+V V+F  + L+VS+   G + Y  +  LFG I P + ++
Sbjct: 1   WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKW 60

Query: 243 EVLSTKVEIRLAKAEPIQ-WSSLE 265
            V   K+EI L K EP + W  LE
Sbjct: 61  TVEDRKIEITLKKKEPGEWWPRLE 84

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). hB-ind1 plays a role in the signaling pathway mediated by the small GTPase Rac1, NUDC is needed for nuclear movement, Melusin interacts with two splice variants of beta1 integrin, and NCB5OR plays a part in maintaining viable pancreatic beta cells. Length = 84

>gnl|CDD|218355 pfam04969, CS, CS domain

 Score = 83.4 bits (207), Expect = 4e-20
 Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 181 HEFYQKPEEVVVTVFAKG-IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAK 239
           +++YQ  +EV +T+  KG    K+V V+   + L VSI  PG + Y     LFG I P +
Sbjct: 3   YDWYQTLDEVTITIPLKGVTKKKDVKVEIKPRSLKVSIKGPGGKEYLLDGELFGPIDPEE 62

Query: 240 CRYEVLSTKVEIRLAK 255
             +++  TKVEI L K
Sbjct: 63  SSWKIEDTKVEITLKK 78

The CS and CHORD (pfam04968) are fused into a single polypeptide chain in metazoans but are found in separate proteins in plants; this is thought to be indicative of an interaction between CS and CHORD. It has been suggested that the CS domain is a binding module for HSP90, implying that CS domain-containing proteins are involved in recruiting heat shock proteins to multiprotein assemblies. Length = 78

>gnl|CDD|107239 cd06489, p23_CS_hSgt1_like, p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins

 Score = 79.3 bits (196), Expect = 1e-18
 Identities = 31/84 (36%), Positives = 54/84 (64%)

Query: 182 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCR 241
           ++YQ   +VV+T+  K +  ++V+V+F ++ LS ++ +P    Y  +  L   I+P +  
Sbjct: 1   DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPEQSS 60

Query: 242 YEVLSTKVEIRLAKAEPIQWSSLE 265
           Y++LSTK+EI+L K E I+WS LE
Sbjct: 61  YKILSTKIEIKLKKTEAIRWSKLE 84

hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup. Length = 84

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 74.0 bits (182), Expect = 2e-16
 Identities = 32/98 (32%), Positives = 52/98 (53%)

Query: 4   DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAI 63
            L       +    ++ A + Y +A+E+ P++A+ + + A A  KL  + EA+ D  +A+
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 64  ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101
           EL+P  +KAY+    A  KL +YE A  A EK   L P
Sbjct: 62  ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99

Length = 100

>gnl|CDD|107238 cd06488, p23_melusin_like, p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins

 Score = 65.8 bits (161), Expect = 1e-13
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 181 HEFYQKPEEVVVTVFAKGI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAK 239
           H+++Q    VVV+V+AK   P  +V V+    +L++ I   G + +     L+G I   K
Sbjct: 3   HDWHQTGSHVVVSVYAKNSNPELSV-VEANSTVLTIHIVFEGNKEFQLDIELWGVIDVEK 61

Query: 240 CRYEVLSTKVEIRLAKAEPIQWSSLE 265
               +L TKVEI+L KAEP  W+ LE
Sbjct: 62  SSVNMLPTKVEIKLRKAEPGSWAKLE 87

Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (CHORD) domains. Length = 87

>gnl|CDD|107225 cd06468, p23_CacyBP, p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP)

 Score = 55.7 bits (135), Expect = 4e-10
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 185 QKPEEVVVTVFAKGI---PAKNVTVDFGEQILSVSI-DVPGEEAYHFQ-PRLFGKIIPAK 239
           Q  + V + +  KG+   P +N+ V+F E+   + + D+ G+  Y F   RL  KI P K
Sbjct: 8   QSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKN-YRFTINRLLKKIDPEK 66

Query: 240 CRYEVLSTKVEIRLAKAEPIQWSSLE 265
             ++V + ++ I LAK +  +W SL 
Sbjct: 67  SSFKVKTDRIVITLAKKKEKKWESLT 92

CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes, in mouse endometrial events, and in thymocyte development. Length = 92

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 52.3 bits (126), Expect = 4e-09
 Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 2  ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL-QNFTEAVADAN 60
          A  L+      F    ++ A + Y +A+E+ P++AE + + A A +KL +++ EA+ D  
Sbjct: 3  AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62

Query: 61 RAIELEP 67
          +A+EL+P
Sbjct: 63 KALELDP 69

Length = 69

>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

 Score = 52.2 bits (126), Expect = 6e-09
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 183 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEA-------YHFQPRLFGKI 235
           +YQ  +EVVVTV   G+  +++ V+  + +L++S     EE        +     L   +
Sbjct: 1   WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDV 60

Query: 236 IPAKCRYEVLSTKVEIRLAK 255
            P K +  + +  +EI L K
Sbjct: 61  DPEKSKASLENGVLEITLPK 80

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). Length = 80

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 50.1 bits (120), Expect = 5e-08
 Identities = 21/63 (33%), Positives = 34/63 (53%)

Query: 48  KLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT 107
           KL ++ EA+    +A+EL+P  + AY+  A A  KL +YE A    EK   L P +++  
Sbjct: 12  KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAY 71

Query: 108 NLI 110
             +
Sbjct: 72  YNL 74

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 34  NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL-EEYETAKVA 92
           ++AE   +   A  KL ++ EA+    +A+EL+P  ++AY+  A A +KL ++YE A   
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 93  LEKGASLAP 101
           LEK   L P
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 13/64 (20%), Positives = 26/64 (40%)

Query: 41  DRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100
             A+A+++  ++ EA+A    A+   P  ++A      A ++      A   L    +  
Sbjct: 2   ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61

Query: 101 PGDS 104
           P D 
Sbjct: 62  PDDP 65

Length = 65

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 16/51 (31%), Positives = 32/51 (62%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS 68
           +E A + Y +A+E+ P++A+ + +   A  KL  + EA+    +A+EL+P+
Sbjct: 50  YEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 3/163 (1%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A  L++K  +A+ +  F  A  LYS+AIE  P+    +++RA     L ++ + V D   
Sbjct: 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV-YYSNRAACHNALGDWEKVVEDTTA 185

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121
           A+EL+P  SKA  R+A A   L +Y  A   L+  AS      R     +  E  + +  
Sbjct: 186 ALELDPDYSKALNRRANAYDGLGKYADA--LLDLTASCIIDGFRNEQSAQAVERLLKKFA 243

Query: 122 GELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEA 164
               K+ LET P N+ S   V         +     ++ SNE 
Sbjct: 244 ESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 24/85 (28%), Positives = 39/85 (45%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            ELA   Y +AI + PN+  +    A   I+   F EA   A+  ++  P+   A++ KA
Sbjct: 209 IELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKA 268

Query: 78  TACMKLEEYETAKVALEKGASLAPG 102
               + + YE A+  L+     AP 
Sbjct: 269 LVDFQKKNYEDARETLQDALKSAPE 293

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 25/87 (28%), Positives = 34/87 (39%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            ELA   Y QA+ I P S       AQ ++    F EA A  +  +  +P    A   K 
Sbjct: 141 LELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKG 200

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
              + L   E A  A  K  +L P + 
Sbjct: 201 DLLLSLGNIELALAAYRKAIALRPNNI 227

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 22/83 (26%), Positives = 38/83 (45%)

Query: 26  SQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85
            ++    P   EL A + +  I+  NF EAV+   +A  L P+  +A+     A  +L  
Sbjct: 90  QKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149

Query: 86  YETAKVALEKGASLAPGDSRFTN 108
           ++ A+ A  +   LAP +    N
Sbjct: 150 FDEARRAYRQALELAPNEPSIAN 172

Length = 257

>gnl|CDD|220081 pfam08959, DUF1872, Domain of unknown function (DUF1872)

 Score = 40.8 bits (95), Expect = 7e-04
 Identities = 52/225 (23%), Positives = 84/225 (37%), Gaps = 25/225 (11%)

Query: 114 EERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPK 173
           E  +     E+   P +  P    +T    P    ++ E          E        P 
Sbjct: 24  ECNLGSVRSEVWVDP-DPDPDLSDATELGGPGKTDAAGETCLEDTTSEPE--------PM 74

Query: 174 YRFQILMHEFYQK-PEEVVVTVFAKGIPAKNVTVDFGEQ------------ILSVSIDVP 220
              Q + ++ Y+K  + VVV V+ K I      V F EQ             L +  D  
Sbjct: 75  VNLQFVKNDSYEKGTDLVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPDCG 134

Query: 221 GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLE--FSKGAVVPQRVNP 278
               + +Q +L   I P +C Y    ++++I L K +  +W  LE   S+GAV   +V  
Sbjct: 135 PNTHFRWQVKLRNLIEPEQCSYCFTPSRLDITLKKRQSQRWGGLEAPASQGAVGGAKVAV 194

Query: 279 PSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNK 323
           PS       T P S    +   + EA+  ++EK +    D  L+ 
Sbjct: 195 PSGPAPMDKTQPGSSKHSLP-AQEEARAVEKEKAKARAEDTGLDP 238

The CS domain, found in Ubiquitin specific peptidase 19 (USP-19), has no known function. Length = 288

>gnl|CDD|107240 cd06490, p23_NCB5OR, p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 184 YQKPEEVVVTVF--AKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKII-PAKC 240
           +Q   EV + V+  +KG PA  V VD  ++ L V I + G+++Y     L  ++  P + 
Sbjct: 4   FQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEI-ILGDKSYLLHLDLSNEVQWPCEV 62

Query: 241 RYEVLSTKVEIRLAKAEPIQWSSL 264
           R    + K+E+ L K EP +W+SL
Sbjct: 63  RISTETGKIELVLKKKEPEKWTSL 86

NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases. Length = 87

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 4/88 (4%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQN--FTEAVADANRAIELEPSMSKAYWR 75
            E AY   +Q ++ +PNS    A R  ASI+L+     EA+A  + A+ L+P    A   
Sbjct: 311 LEQAYQYLNQILKYAPNS--HQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSL 368

Query: 76  KATACMKLEEYETAKVALEKGASLAPGD 103
              A + L ++E A   L K   L P +
Sbjct: 369 LGEAYLALGDFEKAAEYLAKATELDPEN 396

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 38.3 bits (87), Expect = 0.004
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 4/105 (3%)

Query: 17  YFELAYDLYSQAIEISP---NSAELFADRAQASIKLQNFTEAVADANRAIELEPS-MSKA 72
            +E A +LY +A+E+ P     AE           L  + EA+    +A++L P   ++A
Sbjct: 145 DYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEA 204

Query: 73  YWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117
                   +KL +YE A    EK   L P ++     +      +
Sbjct: 205 LLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL 249

Length = 291

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	379
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	100.0
KOG1309	196	consensus Suppressor of G2 allele of skp1 [Signal	100.0
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	100.0
PF05002	82	SGS: SGS domain ; InterPro: IPR007699 This domain	100.0
KOG3260	224	consensus Calcyclin-binding protein CacyBP [Signal	99.94
cd06488	87	p23_melusin_like p23_like domain similar to the C-	99.88
cd00237	106	p23 p23 binds heat shock protein (Hsp)90 and parti	99.87
cd06489	84	p23_CS_hSgt1_like p23_like domain similar to the C	99.86
cd06465	108	p23_hB-ind1_like p23_like domain found in human (h	99.84
KOG0553	304	consensus TPR repeat-containing protein [General f	99.84
cd06468	92	p23_CacyBP p23_like domain found in proteins simil	99.81
cd06466	84	p23_CS_SGT1_like p23_like domain similar to the C-	99.8
cd06490	87	p23_NCB5OR p23_like domain found in NAD(P)H cytoch	99.77
KOG3158	180	consensus HSP90 co-chaperone p23 [Posttranslationa	99.75
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.68
cd06469	78	p23_DYX1C1_like p23_like domain found in proteins	99.68
PF04969	79	CS: CS domain; InterPro: IPR017447 The function of	99.67
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.67
cd06463	84	p23_like Proteins containing this p23_like domain	99.66
cd06493	85	p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear	99.66
PRK15359	144	type III secretion system chaperone protein SscB;	99.65
cd06467	85	p23_NUDC_like p23_like domain of NUD (nuclear dist	99.64
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.59
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.59
KOG4234	271	consensus TPR repeat-containing protein [General f	99.57
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.57
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.54
cd06494	93	p23_NUDCD2_like p23-like NUD (nuclear distribution	99.52
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.5
PRK11189	296	lipoprotein NlpI; Provisional	99.45
KOG1667	320	consensus Zn2+-binding protein Melusin/RAR1, conta	99.44
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.43
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.42
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.38
cd06492	87	p23_mNUDC_like p23-like NUD (nuclear distribution)	99.37
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.36
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.34
cd06495	102	p23_NUDCD3_like p23-like NUD (nuclear distribution	99.33
PRK15331	165	chaperone protein SicA; Provisional	99.31
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.31
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.31
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.3
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.28
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.24
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.24
KOG1126	638	consensus DNA-binding cell division cycle control	99.24
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.23
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.23
PRK12370	553	invasion protein regulator; Provisional	99.19
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.18
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.18
KOG1126	638	consensus DNA-binding cell division cycle control	99.18
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.18
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.18
PRK15359	144	type III secretion system chaperone protein SscB;	99.17
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.17
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.17
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.17
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.16
PRK12370	553	invasion protein regulator; Provisional	99.15
KOG1125	579	consensus TPR repeat-containing protein [General f	99.15
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.14
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.13
PRK11189	296	lipoprotein NlpI; Provisional	99.13
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.12
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.11
PRK10803	263	tol-pal system protein YbgF; Provisional	99.11
KOG2076	895	consensus RNA polymerase III transcription factor	99.1
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.1
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.09
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.09
cd00298	80	ACD_sHsps_p23-like This domain family includes the	99.07
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.06
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.05
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.05
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.04
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.03
PLN02789	320	farnesyltranstransferase	99.02
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.02
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.02
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.01
KOG4555	175	consensus TPR repeat-containing protein [Function	99.01
PF13512	142	TPR_18: Tetratricopeptide repeat	99.0
KOG2265	179	consensus Nuclear distribution protein NUDC [Signa	98.99
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.97
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.97
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.95
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.94
KOG2003	840	consensus TPR repeat-containing protein [General f	98.94
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.94
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.91
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.91
PLN02789	320	farnesyltranstransferase	98.9
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.9
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.87
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.87
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.86
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.84
PF13371	73	TPR_9: Tetratricopeptide repeat	98.83
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.83
PF13371	73	TPR_9: Tetratricopeptide repeat	98.83
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.83
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.82
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.82
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.81
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.81
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.79
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.79
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.79
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.77
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.75
PF12688	120	TPR_5: Tetratrico peptide repeat	98.75
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.74
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.74
KOG1125	579	consensus TPR repeat-containing protein [General f	98.7
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.7
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.68
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.66
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.66
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.65
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.64
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.64
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.63
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.62
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.62
PRK14574	822	hmsH outer membrane protein; Provisional	98.62
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.61
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.61
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.6
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.56
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.55
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.51
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.5
PRK11906	458	transcriptional regulator; Provisional	98.49
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.49
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.48
KOG0553	304	consensus TPR repeat-containing protein [General f	98.48
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.47
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.46
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.46
PRK14574	822	hmsH outer membrane protein; Provisional	98.46
KOG2076	895	consensus RNA polymerase III transcription factor	98.45
KOG1310	758	consensus WD40 repeat protein [General function pr	98.44
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.44
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.43
KOG1129	478	consensus TPR repeat-containing protein [General f	98.42
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.4
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.37
PRK11906	458	transcriptional regulator; Provisional	98.36
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.34
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.31
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.31
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.29
KOG1129	478	consensus TPR repeat-containing protein [General f	98.27
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.27
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.26
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.25
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.23
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.22
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.22
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.2
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.19
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.17
PRK15331	165	chaperone protein SicA; Provisional	98.17
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.17
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.16
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.16
KOG2003	840	consensus TPR repeat-containing protein [General f	98.13
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.13
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.13
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.11
KOG4234	271	consensus TPR repeat-containing protein [General f	98.11
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.11
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.09
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.08
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.07
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.04
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.02
PF12688	120	TPR_5: Tetratrico peptide repeat	98.02
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.01
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.99
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.96
PF13428	44	TPR_14: Tetratricopeptide repeat	97.96
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.94
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.94
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.94
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.9
PF13431	34	TPR_17: Tetratricopeptide repeat	97.89
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.88
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.88
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.88
PRK10803	263	tol-pal system protein YbgF; Provisional	97.87
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.85
PF13431	34	TPR_17: Tetratricopeptide repeat	97.84
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.83
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.82
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.82
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.79
COG0071	146	IbpA Molecular chaperone (small heat shock protein	97.78
PF13428	44	TPR_14: Tetratricopeptide repeat	97.78
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.77
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.75
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.74
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.71
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.66
cd06472	92	ACD_ScHsp26_like Alpha crystallin domain (ACD) fou	97.65
PF13512	142	TPR_18: Tetratricopeptide repeat	97.63
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.62
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.6
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.58
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.58
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.55
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.54
KOG4379	596	consensus Uncharacterized conserved protein (tumor	97.54
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.47
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.44
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.42
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.4
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	97.4
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.39
cd06464	88	ACD_sHsps-like Alpha-crystallin domain (ACD) of al	97.39
PRK10941	269	hypothetical protein; Provisional	97.38
PF00011	102	HSP20: Hsp20/alpha crystallin family This prints e	97.37
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.31
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.31
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.3
cd06471	93	ACD_LpsHSP_like Group of bacterial proteins contai	97.3
KOG3364	149	consensus Membrane protein involved in organellar	97.28
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.25
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.23
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.23
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.22
PRK10941	269	hypothetical protein; Provisional	97.17
KOG2471	696	consensus TPR repeat-containing protein [General f	97.16
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.1
KOG4814	872	consensus Uncharacterized conserved protein [Funct	97.04
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.99
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.98
KOG4555	175	consensus TPR repeat-containing protein [Function	96.97
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.94
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.94
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.92
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.91
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.91
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.9
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.9
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.87
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.82
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.8
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.78
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.75
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.73
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.73
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.71
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.71
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.66
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.65
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.65
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.64
KOG2471	696	consensus TPR repeat-containing protein [General f	96.57
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.56
cd06479	81	ACD_HspB7_like Alpha crystallin domain (ACD) found	96.56
cd06475	86	ACD_HspB1_like Alpha crystallin domain (ACD) found	96.54
cd06497	86	ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai	96.48
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.46
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.43
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.42
cd06526	83	metazoan_ACD Alpha-crystallin domain (ACD) of meta	96.42
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.4
PRK04841	903	transcriptional regulator MalT; Provisional	96.39
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.33
PRK04841	903	transcriptional regulator MalT; Provisional	96.31
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.3
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.29
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.26
cd06498	84	ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai	96.25
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.22
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.17
PLN03218	1060	maturation of RBCL 1; Provisional	96.13
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.1
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	96.06
cd06470	90	ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun	96.04
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.01
cd06478	83	ACD_HspB4-5-6 Alpha-crystallin domain found in alp	96.0
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.98
KOG1915	677	consensus Cell cycle control protein (crooked neck	95.97
PLN03218	1060	maturation of RBCL 1; Provisional	95.96
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.94
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.91
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.9
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.77
KOG1586	288	consensus Protein required for fusion of vesicles	95.76
KOG1586	288	consensus Protein required for fusion of vesicles	95.75
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.71
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.71
COG2912	269	Uncharacterized conserved protein [Function unknow	95.68
KOG1585	308	consensus Protein required for fusion of vesicles	95.66
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.63
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.62
PRK10743	137	heat shock protein IbpA; Provisional	95.56
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.45
cd06476	83	ACD_HspB2_like Alpha crystallin domain (ACD) found	95.39
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.39
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.37
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.34
KOG1585	308	consensus Protein required for fusion of vesicles	95.29
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.19
COG2912	269	Uncharacterized conserved protein [Function unknow	95.14
PLN03077	857	Protein ECB2; Provisional	95.08
cd06481	87	ACD_HspB9_like Alpha crystallin domain (ACD) found	94.96
PRK11597	142	heat shock chaperone IbpB; Provisional	94.94
PLN03077	857	Protein ECB2; Provisional	94.93
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.93
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.8
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.8
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	94.68
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.61
KOG3364	149	consensus Membrane protein involved in organellar	94.35
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.28
cd06482	87	ACD_HspB10 Alpha crystallin domain (ACD) found in	94.24
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.12
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.0
COG5191	435	Uncharacterized conserved protein, contains HAT (H	93.8
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.79
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.79
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.73
KOG4507	886	consensus Uncharacterized conserved protein, conta	93.4
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	93.33
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	93.26
PF08190	328	PIH1: pre-RNA processing PIH1/Nop17	93.22
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	93.22
cd06477	83	ACD_HspB3_Like Alpha crystallin domain (ACD) found	93.01
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.0
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	92.96
KOG2047	835	consensus mRNA splicing factor [RNA processing and	92.73
KOG4814	872	consensus Uncharacterized conserved protein [Funct	92.52
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	92.41
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	92.33
KOG1550	552	consensus Extracellular protein SEL-1 and related	92.27
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	92.1
KOG2047	835	consensus mRNA splicing factor [RNA processing and	92.01
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	91.83
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	91.59
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	91.59
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	91.5
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	91.46
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	91.4
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	91.3
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.21
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	91.17
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.88
COG3898	531	Uncharacterized membrane-bound protein [Function u	90.78
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	90.45
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	90.4
PF05455	177	GvpH: GvpH; InterPro: IPR008633 This family consis	90.34
KOG2581	493	consensus 26S proteasome regulatory complex, subun	90.32
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	90.19
KOG0529	421	consensus Protein geranylgeranyltransferase type I	89.81
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	89.8
KOG2422	665	consensus Uncharacterized conserved protein [Funct	89.7
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	89.43
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	89.43
KOG1258	577	consensus mRNA processing protein [RNA processing	89.42
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	89.24
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	89.22
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	89.17
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	88.93
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	88.87
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	88.72
COG3629	280	DnrI DNA-binding transcriptional activator of the	88.67
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	88.66
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	88.47
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	88.43
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	88.35
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	88.18
cd06480	91	ACD_HspB8_like Alpha-crystallin domain (ACD) found	88.14
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	88.01
COG3898	531	Uncharacterized membrane-bound protein [Function u	87.88
PHA02537	230	M terminase endonuclease subunit; Provisional	87.75
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	87.65
KOG0529	421	consensus Protein geranylgeranyltransferase type I	87.64
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	87.39
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	86.92
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	86.84
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	85.81
COG4455	273	ImpE Protein of avirulence locus involved in tempe	85.8
KOG2300	629	consensus Uncharacterized conserved protein [Funct	85.26
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	84.98
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	84.75
COG5191	435	Uncharacterized conserved protein, contains HAT (H	84.64
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	84.63
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	84.5
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	84.31
KOG2300	629	consensus Uncharacterized conserved protein [Funct	84.21
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	84.06
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	83.98
COG3118	304	Thioredoxin domain-containing protein [Posttransla	83.97
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	83.84
COG4941	415	Predicted RNA polymerase sigma factor containing a	83.55
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	83.48
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	83.26
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	83.21
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	82.99
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	82.99
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	82.93
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	82.75
PF04212	69	MIT: MIT (microtubule interacting and transport) d	82.42
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	82.17
COG3947	361	Response regulator containing CheY-like receiver a	82.07
KOG3783	546	consensus Uncharacterized conserved protein [Funct	81.51
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	81.38
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	81.14
KOG2041	1189	consensus WD40 repeat protein [General function pr	80.93
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	80.72
COG3947	361	Response regulator containing CheY-like receiver a	80.13
KOG1310	758	consensus WD40 repeat protein [General function pr	80.07

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=100.00  E-value=1.2e-89  Score=667.92  Aligned_cols=356  Identities=73%  Similarity=1.130  Sum_probs=305.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (379)
Q Consensus         1 ~A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~   80 (379)
                      ||..|..+|+.+|..|+|++|+.+|+++|.++|+++.+|++||.||+++|++++|+.++.+|+.++|.++.+|+++|.+|
T Consensus         1 ~~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~   80 (356)
T PLN03088          1 MAKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC   80 (356)
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcccCCCCCCCCCCccccCCCCCCCCCCCCCccccccccc
Q 016973           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDV  160 (379)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~~~~~~~  160 (379)
                      +.+|+|++|+.+|+++++++|++..+..|+..|...+.......+...+.  .+.    . +..    .++    .  ..
T Consensus        81 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~~~~~~~~~~~--~~~----~-~~~----~~~----~--~~  143 (356)
T PLN03088         81 MKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEEEKDLVQPVPS--DLP----S-SVT----APP----V--EE  143 (356)
T ss_pred             HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhccccccccc--ccc----c-ccc----ccc----c--cc
Confidence            99999999999999999999999999999999999997653332211110  000    0 000    000    0  00


Q ss_pred             ccccccCCCCCcccccccccccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcc
Q 016973          161 SNEAAMAAPARPKYRFQILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKC  240 (379)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s  240 (379)
                      ....+..++..+++|     |+|||++++|+|+||+||+.++++.|+|++++|+|+|..+++..|.|.++||++|+|++|
T Consensus       144 ~~~~~~~~~~~~~~r-----~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s  218 (356)
T PLN03088        144 ADATPVVPPSKPKYR-----HEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDKC  218 (356)
T ss_pred             cccCCCCCCCCCccc-----cceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCCCcceeeccccccccccccc
Confidence            011112233456789     999999999999999999999999999999999999988888899999999999999999


Q ss_pred             eEEEeCcEEEEEEeecCCCCCCccccCCCccCCCccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcccchHH
Q 016973          241 RYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAA  320 (379)
Q Consensus       241 ~~~v~~~kiei~L~K~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~~~~~~~~~e~~e~~~~  320 (379)
                      +|+|+++||||+|+|+++.+|++|+..+............ .....|+||||+++++|||||+.++++|+++|+++|+++
T Consensus       219 ~~~v~~~Kiei~l~K~~~~~W~~L~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~dWdk~~~~~~~e~~~e~~~g~~~  297 (356)
T PLN03088        219 KYEVLSTKIEIRLAKAEPITWASLEYGKGPAVLPKPNVSS-EVSQRPAYPSSKKKKDDWDKLEAEVKKEEKDEKLDGDAA  297 (356)
T ss_pred             EEEEecceEEEEEecCCCCCccccccCCccccccCCCCCc-CcccCCCCCCCCCCCCChhhhhhhhhhhhhccccccchH
Confidence            9999999999999999999999999876443222111111 124468999998778899999999988888888899999


Q ss_pred             HHHHHHHHhcCCCHHHHHHhhhhhhccCCeeeecccccccCcccccCCCCCccccccCC
Q 016973          321 LNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY  379 (379)
Q Consensus       321 l~~~f~~iY~~~d~d~kram~Ks~~eS~gt~lstnw~~v~~~~~~~~~p~g~~~k~~~~  379 (379)
                      ||+||||||+||||||||||||||+|||||||||||+|||+|+||++||+|||+|||++
T Consensus       298 ~~~~f~~iY~~~d~d~rram~KSf~eS~gt~lstnw~~v~~~~~e~~pp~g~e~k~~~~  356 (356)
T PLN03088        298 LNKFFREIYQNADEDTRRAMMKSFVESNGTVLSTNWKEVGSKKIEGSPPDGMELKKWEY  356 (356)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhcCCeEEeccHHHhcCCccccCCCCCCccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999985

>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-70  Score=456.74  Aligned_cols=195  Identities=59%  Similarity=0.944  Sum_probs=175.4

Q ss_pred             cccccccccccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEE
Q 016973          172 PKYRFQILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEI  251 (379)
Q Consensus       172 ~~~~~~~~~~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei  251 (379)
                      +++|     |||||+.+.|+|+||.+|+..+||.|.|+++.|++.+..++|..|.|.+.|||+|+|+.|+|+++++||||
T Consensus         2 ~k~r-----~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI   76 (196)
T KOG1309|consen    2 MKIR-----HDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGSEYNLQLKLYHEIIPEKSSFKVFSTKVEI   76 (196)
T ss_pred             Cccc-----ceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCchhhhhhHHhcccccccceeeEeeeeeEEE
Confidence            4677     99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCCCCccccCCCccCCCccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcccchHHHHHHHHHHhcC
Q 016973          252 RLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYAD  331 (379)
Q Consensus       252 ~L~K~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~~~~~~~~~e~~e~~~~l~~~f~~iY~~  331 (379)
                      +|.|.+..+|..|+......+.+....    +....+||+++. ++|||+++.+.+++|++++.| ||+||+|||+||++
T Consensus        77 ~L~K~~~irW~~Le~g~~~~~~~~~~v----s~~~s~~Pssk~-~kdWdkl~~e~~~eEe~e~l~-dAAl~~lF~kiY~~  150 (196)
T KOG1309|consen   77 TLAKAEIIRWESLEKGKGSAVAPKPNV----SSTASSYPSSKP-AKDWDKLEKEEKKEEEDEKLE-DAALNKLFQKIYSD  150 (196)
T ss_pred             EeccccchhhhhhhcccCccccccccc----ccccccCCCCCc-ccCHHHHHHHhhhhhhccchh-HHHHHHHHHHHHhc
Confidence            999998999999996322221111111    123348999877 889999999999888888887 89999999999999


Q ss_pred             CCHHHHHHhhhhhhccCCeeeecccccccCcccccCCCCCcccccc
Q 016973          332 ADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW  377 (379)
Q Consensus       332 ~d~d~kram~Ks~~eS~gt~lstnw~~v~~~~~~~~~p~g~~~k~~  377 (379)
                      |||||||||||||+|||||||||||+|||+|+||++||+|||+|+|
T Consensus       151 addDvrRAM~KSf~ESnGTvLSTnW~eVg~kkve~~PP~gmE~Kk~  196 (196)
T KOG1309|consen  151 ADDDVRRAMMKSFSESNGTVLSTNWSEVGKKKVETKPPDGMEPKKW  196 (196)
T ss_pred             CCHHHHHHHHhhhhhcCCeEEeccHHHhccceeeecCCCCCCcCcC
Confidence            9999999999999999999999999999999999999999999999

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=100.00  E-value=3.2e-54  Score=382.58  Aligned_cols=347  Identities=24%  Similarity=0.354  Sum_probs=250.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhCC------CCHHH
Q 016973            9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL----------QNFTEAVADANRAIELEP------SMSKA   72 (379)
Q Consensus         9 g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~l----------g~~~eAl~~~~~Al~l~p------~~~~a   72 (379)
                      |..++...+.-.|+.+|...+.-.|.|..++...+.|+.++          -....|++.+..|+.+..      ...-+
T Consensus         2 ~~~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~   81 (368)
T COG5091           2 YKALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLV   81 (368)
T ss_pred             ccchhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeee
Confidence            34567777888899999999999999976666666666554          346789999999997753      35678


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcccCCCCCCCCCCccccCCCCCCCCCCCCCc
Q 016973           73 YWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTE  152 (379)
Q Consensus        73 ~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~~~~~  152 (379)
                      .+|++++||.+++|+.|..+|..|+.+. -+..+..|-.++...|.............+..|...+..  ..+.+..+  
T Consensus        82 ~~~~~v~~~~ik~Ye~a~~~F~~A~~~~-~~d~L~~We~rLet~L~~~~kkQ~~~Tnk~~I~~vEs~e--~~GD~~~~--  156 (368)
T COG5091          82 NFRYFVHFFNIKDYELAQSYFKKAKNLY-VDDTLPLWEDRLETKLNKKNKKQKDSTNKHTIKPVESIE--NRGDNNSS--  156 (368)
T ss_pred             hhhhHHHhhhHHHHHHHHHHHHHHHHHh-hcccchHHHHHHHHHHhHhhHhhccccCCCCCCchhhhh--ccCccccc--
Confidence            9999999999999999999999999994 445577788888887777633222222111111100000  11111110  


Q ss_pred             ccccccccccccccCCC---CCcccccccccccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCCce-eeec
Q 016973          153 DVETVMDVSNEAAMAAP---ARPKYRFQILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEA-YHFQ  228 (379)
Q Consensus       153 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~-~~~~  228 (379)
                          ..|.+|......|   ..-+++     |+|.||...+.|.||.+-+..++|.+-++.+.|+|+++...+.. +.+.
T Consensus       157 ----~S~~sP~~~~~~~qE~~~~~i~-----yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~~~~~~~~~  227 (368)
T COG5091         157 ----HSPISPLKIETAPQESPKMEIA-----YDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRRLRLWNDIT  227 (368)
T ss_pred             ----cCCCCccccccCcccCccceee-----eeccccceeEEEEEecCCCCccccceeecCCcceeeeeccccchHHHhh
Confidence                1123331111122   222455     77777777777777778888899999999999999998776544 4456


Q ss_pred             cccccccccCcceEEEeCcEEEEEEeecCCCCCCccccCCCccCCCccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhh
Q 016973          229 PRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKK  308 (379)
Q Consensus       229 ~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~~~~~  308 (379)
                      +.||++|.|+.+++++.+.++||.|+|.+..+|..|++.......   ...........+-|+|+.+++||+++..+.+ 
T Consensus       228 ~~Ly~ev~P~~~s~k~fsK~~e~~l~KV~~v~W~~l~~~pa~~S~---~l~~e~~N~~SAt~~s~~k~~Dw~~l~~~~~-  303 (368)
T COG5091         228 ISLYKEVYPDIRSIKSFSKRVEVHLRKVEMVRWGGLNGRPADESS---RLSDEGKNSDSATPKSSKKQDDWKELMVEDS-  303 (368)
T ss_pred             hhhhhhcCcchhhhhhcchhheehhhhhhhhhhcccccCcccccc---ccccccccccccCCccccccccHHHhhhhhc-
Confidence            699999999999999999999999999999999999976322100   0000000112344777888999999987522 


Q ss_pred             hhhhhcccchHHHHHHHHHHhcCCCHHHHHHhhhhhhccCCeeeecccccccCcccccCCCCCcccccc
Q 016973          309 EEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW  377 (379)
Q Consensus       309 ~~~~e~~e~~~~l~~~f~~iY~~~d~d~kram~Ks~~eS~gt~lstnw~~v~~~~~~~~~p~g~~~k~~  377 (379)
                       .++|  ++ ..+++|||+||++|||||||||||||+|||||+|||||++|++|+|+++||+|||+|+|
T Consensus       304 -~dEe--~p-s~~dslFqklY~~addDtrRAMmKSf~ESnGTaLSTdW~dVkskt~~t~pPeGMEPK~~  368 (368)
T COG5091         304 -GDEE--NP-SVMDSLFQKLYQRADDDTRRAMMKSFYESNGTALSTDWDDVKSKTITTEPPEGMEPKHW  368 (368)
T ss_pred             -cccc--Cc-hHHHHHHHHHHhcCCchHHHHHHHHHhhcCCceecccHHHhhcCceecCCCCCCCCCCC
Confidence             1222  22 34788999999999999999999999999999999999999999999999999999999

>PF05002 SGS: SGS domain ; InterPro: IPR007699 This domain was thought to be unique to the SGT1-like proteins, but is also found in calcyclin binding proteins

Probab=100.00  E-value=3.1e-43  Score=262.48  Aligned_cols=81  Identities=58%  Similarity=0.998  Sum_probs=31.8

Q ss_pred             CCchhHHHHHhhhhhhhcccchHHHHHHHHHHhcCCCHHHHHHhhhhhhccCCeeeecccccccCcccccCCCCCccccc
Q 016973          297 VDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKK  376 (379)
Q Consensus       297 ~dWdk~~~~~~~~~~~e~~e~~~~l~~~f~~iY~~~d~d~kram~Ks~~eS~gt~lstnw~~v~~~~~~~~~p~g~~~k~  376 (379)
                      +||++|......++++++.+++++||+|||+||++|||||||||||||+|||||||||||+|||+++||++||+|||+||
T Consensus         2 ~~W~~l~~~~~~~~~~d~~d~~a~lm~lfkkiY~~gDDe~KRam~KSf~ES~GT~LSTnW~eV~~~~~~~~pp~g~e~k~   81 (82)
T PF05002_consen    2 KNWDKLTKKKEKEEEDDEEDPEASLMNLFKKIYDNGDDEMKRAMMKSFTESQGTVLSTNWDEVGKKKVEPSPPDGMEWKK   81 (82)
T ss_dssp             ---SSSBHH--------------SHHHHHHHHHTTS-SCHHHHHHHHHHCT-----------------------------
T ss_pred             CChHHccccccccccccccCchHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCcccccchhccchhhhcccccccccccc
Confidence            58999986644455555566777899999999999999999999999999999999999999999999999999999999


Q ss_pred             c
Q 016973          377 W  377 (379)
Q Consensus       377 ~  377 (379)
                      |
T Consensus        82 ~   82 (82)
T PF05002_consen   82 W   82 (82)
T ss_dssp             -
T ss_pred             C
Confidence            9

Sgt1p is a highly conserved eukaryotic protein that is required for both SCF (Skp1p/Cdc53p-Cullin-F-box)-mediated ubiquitination and kinetochore function in yeast and also plays a role in the cAMP pathway. Calcyclin (S100A6) is a member of the S100A family of calcium binding proteins and appears to play a role in cell proliferation [].; PDB: 1X5M_A 2JTT_D.

>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]

Probab=99.94  E-value=1.2e-27  Score=200.31  Aligned_cols=149  Identities=23%  Similarity=0.350  Sum_probs=124.3

Q ss_pred             CCCcccccccccccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCCceeeecc-ccccccccCcceEEEeCc
Q 016973          169 PARPKYRFQILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQP-RLFGKIIPAKCRYEVLST  247 (379)
Q Consensus       169 ~~~~~~~~~~~~~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~-~L~~~I~p~~s~~~v~~~  247 (379)
                      |....|-.-++.|.|.|++..|.++|.+.||+.++|+|+|++++|.+.+....|++|.+.+ +|+++|.||+|+.+|.+.
T Consensus        65 pvs~~yl~~vt~ygWDQs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dlqGK~y~~~vnnLlk~I~vEks~~kvKtd  144 (224)
T KOG3260|consen   65 PVSSSYLNYVTLYGWDQSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDLQGKNYRMIVNNLLKPISVEKSSKKVKTD  144 (224)
T ss_pred             cchhhhHHHhhhcCccccCCeeEEEEEeecccccceeEEecccceeeeeeecCCcceeeehhhhccccChhhcccccccc
Confidence            3344555566779999999999999999999999999999999999999999999999999 899999999999999999


Q ss_pred             EEEEEEeecCCCCCCccccCCCccCCCccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcccchHHHHHHHHH
Q 016973          248 KVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQE  327 (379)
Q Consensus       248 kiei~L~K~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~~~~~~~~~e~~e~~~~l~~~f~~  327 (379)
                      .|.|.|+|.+..+|.-|+.-...-          .+..+|+|-                    .+.  ++.++||++|++
T Consensus       145 ~v~I~~kkVe~~rwd~Lt~~~Ke~----------Kek~kpsl~--------------------ke~--DP~~glmnvmKk  192 (224)
T KOG3260|consen  145 TVLILCKKVENTRWDYLTQVEKEC----------KEKEKPSLD--------------------KET--DPSEGLMNVMKK  192 (224)
T ss_pred             eEEEeehhhhcccchHHHHHHHHH----------hhccCcccc--------------------ccC--ChHHHHHHHHHH
Confidence            999999999899999998432110          012333331                    111  244689999999


Q ss_pred             HhcCCCHHHHHHhhhhhhccCC
Q 016973          328 IYADADEDTRRAMKKSFVESNG  349 (379)
Q Consensus       328 iY~~~d~d~kram~Ks~~eS~g  349 (379)
                      ||.+||+||||+|+|+|+||..
T Consensus       193 ~YeDGD~~mK~tIaKAWtesr~  214 (224)
T KOG3260|consen  193 IYEDGDDDMKQTIAKAWTESRE  214 (224)
T ss_pred             HHhcccHHHHHHHHHHHHHhhh
Confidence            9999999999999999999963

>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins

Probab=99.88  E-value=2.1e-22  Score=156.18  Aligned_cols=85  Identities=35%  Similarity=0.563  Sum_probs=81.4

Q ss_pred             ccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecCCCC
Q 016973          181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQ  260 (379)
Q Consensus       181 ~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~  260 (379)
                      |||||++++|+|+||++++.++++.|+|++++|+|++..++++.|.+.++||++|+|++|+++|.++||||+|+|+++.+
T Consensus         3 ~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~~~~~   82 (87)
T cd06488           3 HDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEGNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKAEPGS   82 (87)
T ss_pred             ccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCCCceEEEEeeccceEChhHcEEEecCcEEEEEEEeCCCCc
Confidence            99999999999999999999999999999999999887777878999999999999999999999999999999999899


Q ss_pred             CCccc
Q 016973          261 WSSLE  265 (379)
Q Consensus       261 W~~L~  265 (379)
                      |++||
T Consensus        83 W~~Le   87 (87)
T cd06488          83 WAKLE   87 (87)
T ss_pred             CccCC
Confidence            99996

Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C

>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor

Probab=99.87  E-value=3.9e-22  Score=159.48  Aligned_cols=102  Identities=19%  Similarity=0.334  Sum_probs=89.5

Q ss_pred             cccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecCC-
Q 016973          180 MHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP-  258 (379)
Q Consensus       180 ~~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~-  258 (379)
                      .+.|||+.+.|+|||++++  .++++|+|++++|+|+....+|..|.++|+||++|+|++|+|+|++++|+|+|+|++. 
T Consensus         3 ~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~K~~~~   80 (106)
T cd00237           3 KTLWYDRRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNGDNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLRKGKEG   80 (106)
T ss_pred             cceeeECCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECCCCcEEEEEEEeecccCcccCeEEeCCceEEEEEEeCCCC
Confidence            3889999999999999997  5799999999999999865567789999999999999999999999999999999975 


Q ss_pred             CCCCccccCCCccCCCccCCCCCCCCCCCCCCCCCCCCCCchhHHH
Q 016973          259 IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEA  304 (379)
Q Consensus       259 ~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~  304 (379)
                      ..|++|++.                ..++.|.     ++|||||.+
T Consensus        81 ~~WprL~k~----------------~~k~~~l-----k~DfdkW~D  105 (106)
T cd00237          81 VAWPRLTKE----------------KAKPNWL-----SVDFDNWRD  105 (106)
T ss_pred             CCCchhhcC----------------CCCCCcE-----ECcchhccC
Confidence            589999986                3345555     679999984

p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.

>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins

Probab=99.86  E-value=9.6e-22  Score=151.68  Aligned_cols=84  Identities=37%  Similarity=0.757  Sum_probs=80.5

Q ss_pred             cccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecCCCCC
Q 016973          182 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQW  261 (379)
Q Consensus       182 ~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W  261 (379)
                      ||||+.+.|+|+|+++++.++++.|+|++++|+|++...+|..|.+.++||++|+|++|+|+|++++|||+|+|+++..|
T Consensus         1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W   80 (84)
T cd06489           1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTEAIRW   80 (84)
T ss_pred             CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCCCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCCCCCC
Confidence            79999999999999999999999999999999999987777789999999999999999999999999999999988999


Q ss_pred             Cccc
Q 016973          262 SSLE  265 (379)
Q Consensus       262 ~~L~  265 (379)
                      ++||
T Consensus        81 ~~Le   84 (84)
T cd06489          81 SKLE   84 (84)
T ss_pred             ccCC
Confidence            9996

hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.

>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins

Probab=99.84  E-value=8.8e-21  Score=153.36  Aligned_cols=86  Identities=22%  Similarity=0.346  Sum_probs=79.6

Q ss_pred             cccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcC-CCceeeeccccccccccCcceEEEeCcEEEEEEeecC-
Q 016973          180 MHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAE-  257 (379)
Q Consensus       180 ~~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~-~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~-  257 (379)
                      .|+||||.+.|+|+|+++++  +++.|.|++++|+|++... ++..|.+.++||++|+|++|+|+|.+++|+|+|+|++ 
T Consensus         2 ~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~~~   79 (108)
T cd06465           2 PVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKEA   79 (108)
T ss_pred             ceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEEEECCC
Confidence            38999999999999999988  8999999999999998654 5667999999999999999999999999999999999 


Q ss_pred             CCCCCccccC
Q 016973          258 PIQWSSLEFS  267 (379)
Q Consensus       258 ~~~W~~L~~~  267 (379)
                      +..|++|+..
T Consensus        80 ~~~W~~L~~~   89 (108)
T cd06465          80 GEYWPRLTKE   89 (108)
T ss_pred             CCCCcccccC
Confidence            7899999975

hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.84  E-value=1.9e-20  Score=171.33  Aligned_cols=120  Identities=31%  Similarity=0.515  Sum_probs=116.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (379)
Q Consensus         1 ~A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~   80 (379)
                      +|+.|..+|+.+++.++|++|+..|++||.++|+++.+|++||.+|.+||.|+.|++||+.|+.++|.+.++|.|+|.+|
T Consensus        80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~  159 (304)
T KOG0553|consen   80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY  159 (304)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +.+|+|.+|+.+|+++++++|++..++..+..++..+++.
T Consensus       160 ~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~  199 (304)
T KOG0553|consen  160 LALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEP  199 (304)
T ss_pred             HccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999998888875

>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP)

Probab=99.81  E-value=1.1e-19  Score=142.77  Aligned_cols=88  Identities=27%  Similarity=0.450  Sum_probs=81.3

Q ss_pred             cccccccccCCeEEEEEEeCCCCC---CceEEEEeecEEEEEEEcCCCceeeeccc-cccccccCcceEEEeCcEEEEEE
Q 016973          178 ILMHEFYQKPEEVVVTVFAKGIPA---KNVTVDFGEQILSVSIDVPGEEAYHFQPR-LFGKIIPAKCRYEVLSTKVEIRL  253 (379)
Q Consensus       178 ~~~~~W~Qt~~~V~i~i~~k~~~~---~~v~v~~~~~~l~v~~~~~~~~~~~~~~~-L~~~I~p~~s~~~v~~~kiei~L  253 (379)
                      |++|+|+||++.|+|+|+++++..   +++.|+|++++|+|.+...+|.+|.+.+. ||++|+|++|+|++.+++|+|+|
T Consensus         1 ~~~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L   80 (92)
T cd06468           1 ITKYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITL   80 (92)
T ss_pred             CceeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEE
Confidence            456999999999999999999876   99999999999999987667788999885 99999999999999999999999


Q ss_pred             eecCCCCCCccc
Q 016973          254 AKAEPIQWSSLE  265 (379)
Q Consensus       254 ~K~~~~~W~~L~  265 (379)
                      .|+++..|++|+
T Consensus        81 ~K~~~~~W~~L~   92 (92)
T cd06468          81 AKKKEKKWESLT   92 (92)
T ss_pred             EeCCCCccCccC
Confidence            999989999984

CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes

>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)

Probab=99.80  E-value=2.9e-19  Score=137.78  Aligned_cols=84  Identities=49%  Similarity=0.782  Sum_probs=79.2

Q ss_pred             cccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecCCCCC
Q 016973          182 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQW  261 (379)
Q Consensus       182 ~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W  261 (379)
                      ||||+++.|+|+|+++|+.++++.|.|++++|+|++...++..|.+.++||++|+|++|+|++.+++|+|+|+|+....|
T Consensus         1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~~~W   80 (84)
T cd06466           1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEPGSW   80 (84)
T ss_pred             CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECCCCCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCCCCC
Confidence            69999999999999999999999999999999999876546679999999999999999999999999999999998999


Q ss_pred             Cccc
Q 016973          262 SSLE  265 (379)
Q Consensus       262 ~~L~  265 (379)
                      ++|+
T Consensus        81 ~~L~   84 (84)
T cd06466          81 PSLE   84 (84)
T ss_pred             ccCC
Confidence            9985

Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug

>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins

Probab=99.77  E-value=2.3e-18  Score=133.29  Aligned_cols=83  Identities=29%  Similarity=0.444  Sum_probs=73.0

Q ss_pred             ccccccCCeEEEEEEeCC--CCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeC--cEEEEEEeec
Q 016973          181 HEFYQKPEEVVVTVFAKG--IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS--TKVEIRLAKA  256 (379)
Q Consensus       181 ~~W~Qt~~~V~i~i~~k~--~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~--~kiei~L~K~  256 (379)
                      ||||||+++|+|+||.|+  .+..++.+.++.++|+|++..+ +..|.+.++||++|+|+. +++++.  +||||+|+|+
T Consensus         1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~-~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~K~   78 (87)
T cd06490           1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG-DKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLKKK   78 (87)
T ss_pred             CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC-CceEEEeeeccccCCCCc-EEEEcccCceEEEEEEcC
Confidence            799999999999999884  6667778888999999998876 777999999999998665 899985  4999999999


Q ss_pred             CCCCCCccc
Q 016973          257 EPIQWSSLE  265 (379)
Q Consensus       257 ~~~~W~~L~  265 (379)
                      ++..|++|.
T Consensus        79 e~~~W~~Lg   87 (87)
T cd06490          79 EPEKWTSLG   87 (87)
T ss_pred             CCCccccCc
Confidence            999999983

NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.

>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=6.8e-19  Score=147.69  Aligned_cols=113  Identities=24%  Similarity=0.313  Sum_probs=94.5

Q ss_pred             cccccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEc-CCCceeeeccccccccccCcceEEEeCcEEEEEEeec
Q 016973          178 ILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKA  256 (379)
Q Consensus       178 ~~~~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~-~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~  256 (379)
                      ++.+.|+|+.+.|+|+|.+.  ...++.|.+++..|+|+.+. .++..|.++|+||++|+|++|+++++++.|.++|+|+
T Consensus         7 ~p~v~Waqr~~~vyltv~Ve--d~~d~~v~~e~~~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~K~   84 (180)
T KOG3158|consen    7 PPEVKWAQRRDLVYLTVCVE--DAKDVHVNLEPSKLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILRKK   84 (180)
T ss_pred             CCcchhhhhcCeEEEEEEec--cCccceeeccccEEEEEeccCCCceeeEEeeehhhhcCHhhccccccceEEEEEEEcc
Confidence            34467999999999999998  55688999999999999876 4555677889999999999999999999999999999


Q ss_pred             CC-CCCCccccCCCccCCCccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhh
Q 016973          257 EP-IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEE  313 (379)
Q Consensus       257 ~~-~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~~~~~~~~~e  313 (379)
                      +. .+||+|++.                ..++.|.     +.|||||.++.++++.++
T Consensus        85 e~~~~WprLtke----------------K~K~hwL-----kvDFdkW~Dededde~~~  121 (180)
T KOG3158|consen   85 ELGEYWPRLTKE----------------KAKLHWL-----KVDFDKWVDEDEDDEAED  121 (180)
T ss_pred             ccccccchhhhc----------------ccccceE-----Ecchhhccccccccchhh
Confidence            87 899999976                4567776     569999998754444433

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=3.9e-16  Score=152.21  Aligned_cols=117  Identities=32%  Similarity=0.531  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      |......|+.+|..|+|..|+..|++||..+|+++.+|.|||.||.+++++..|+.|++.+++++|++..+|+|.|.+++
T Consensus       358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~  437 (539)
T KOG0548|consen  358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALR  437 (539)
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence            56678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA  118 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~  118 (379)
                      .+.+|+.|+.+|+.+++++|++..+..++.+|...+.
T Consensus       438 ~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~  474 (539)
T KOG0548|consen  438 AMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQR  474 (539)
T ss_pred             HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999988763

>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1

Probab=99.68  E-value=2.1e-16  Score=119.97  Aligned_cols=78  Identities=26%  Similarity=0.346  Sum_probs=73.3

Q ss_pred             ccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecCCCCCC
Q 016973          183 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWS  262 (379)
Q Consensus       183 W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W~  262 (379)
                      |+|+++.|+|+|+++|+.++++.|+++++.|.|++     ..|.+.++||++|+|++|++++.+++|+|+|.|+++..|+
T Consensus         1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~-----~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~~~W~   75 (78)
T cd06469           1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF-----PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEPGIWE   75 (78)
T ss_pred             CcccCCEEEEEEEeCCCccccceEEEecCEEEEcC-----CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCCCccc
Confidence            99999999999999999999999999999888765     3699999999999999999999999999999999888999


Q ss_pred             ccc
Q 016973          263 SLE  265 (379)
Q Consensus       263 ~L~  265 (379)
                      +|+
T Consensus        76 ~L~   78 (78)
T cd06469          76 ALC   78 (78)
T ss_pred             ccC
Confidence            996

The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.

>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown

Probab=99.67  E-value=3.2e-16  Score=118.90  Aligned_cols=76  Identities=37%  Similarity=0.574  Sum_probs=69.2

Q ss_pred             cccccccCCeEEEEEEeCCCC--CCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEee
Q 016973          180 MHEFYQKPEEVVVTVFAKGIP--AKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK  255 (379)
Q Consensus       180 ~~~W~Qt~~~V~i~i~~k~~~--~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K  255 (379)
                      +|+|+||.+.|+|+|++++..  ++++.|+|++++|+|++...++..|.+.++||++|+|++|+|++.+++|+|+|+|
T Consensus         2 ~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~K   79 (79)
T PF04969_consen    2 RYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGELFGEIDPDESTWKVKDNKIEITLKK   79 (79)
T ss_dssp             SEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEEEBSS-BECCCEEEEEETTEEEEEEEB
T ss_pred             CeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEEEEeeeEcchhcEEEEECCEEEEEEEC
Confidence            499999999999999997765  8999999999999999987666889999999999999999999999999999998

The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.67  E-value=2.9e-17  Score=158.93  Aligned_cols=319  Identities=24%  Similarity=0.192  Sum_probs=208.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (379)
Q Consensus         1 ~A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~   80 (379)
                      +|..+..+|+.++..+.|+.|+.+|.+||+++|+++.++-+|+.++++.++|..|+.|+.+|++++|...++|+|+|.++
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~   82 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV   82 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence            57888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh--cccCCCCCCCCCCccccCCCCCCCCCCCCCccccccc
Q 016973           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET--GELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVM  158 (379)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~--~~~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~~~~~  158 (379)
                      ..+++|.+|+..|+....+.|+++.+.+.+..|+..+....  ..++.+...+.++..+.    -...            
T Consensus        83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~~s~~~~~----~~~~------------  146 (476)
T KOG0376|consen   83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDKKSVVEMK----IDEE------------  146 (476)
T ss_pred             HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCCccccccc----cccc------------
Confidence            99999999999999999999999999999999999988862  22222221111111000    0000            


Q ss_pred             ccccccccCCCCCcccccccccccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccC
Q 016973          159 DVSNEAAMAAPARPKYRFQILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPA  238 (379)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~  238 (379)
                      ...+  -.....-+.+.     ..               .++.+.|+.-+     .+ +.  .  .+.+.-.+.+.|+..
T Consensus       147 ~~~~--i~~~y~g~~le-----~~---------------kvt~e~vk~~~-----~~-~~--~--~~~L~~k~a~~i~~~  194 (476)
T KOG0376|consen  147 DMDL--IESDYSGPVLE-----DH---------------KVTLEFVKTLM-----EV-FK--N--QKKLPKKYAYSILDL  194 (476)
T ss_pred             cccc--cccccCCcccc-----cc---------------hhhHHHHHHHH-----Hh-hh--c--ccccccccceeeHHH
Confidence            0000  00001111222     11               12222221111     11 11  1  123333455555555


Q ss_pred             cce-EEEeCcEEEEEEeecCCCCCCccccC-CCcc-CCCccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcc
Q 016973          239 KCR-YEVLSTKVEIRLAKAEPIQWSSLEFS-KGAV-VPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKL  315 (379)
Q Consensus       239 ~s~-~~v~~~kiei~L~K~~~~~W~~L~~~-~~~~-~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~~~~~~~~~e~~  315 (379)
                      .+. +.+.+.-|+|.   .....|-.+.+. ..+. ....+-...........|-.    ..||..+.....+-......
T Consensus       195 ~~~~~~~l~~~ve~~---~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~~ylf----ngdfv~rgs~s~e~~~~~~~  267 (476)
T KOG0376|consen  195 AKTILRKLPSLVEIS---VPGDVKISVCGDTHGQFYDLLNIFELNGLPSETNPYLF----NGDFVDRGSWSVEVILTLFA  267 (476)
T ss_pred             HhhHHhcCCcceEee---cCCCceEEecCCccccccchhhhHhhcCCCCCcccccc----cCceeeecccceeeeeeehh
Confidence            555 34455667777   333333333322 1110 00000000000011122221    22555554322222233344


Q ss_pred             cchHHHHHHHHHHhcCCCHHHHHHhhhhhhccCCeeeecccccccCcccccCCCCCcccccc
Q 016973          316 DGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW  377 (379)
Q Consensus       316 e~~~~l~~~f~~iY~~~d~d~kram~Ks~~eS~gt~lstnw~~v~~~~~~~~~p~g~~~k~~  377 (379)
                      .+...+|+||-..+.-.+++|.+.|-..+-.+.+++.+++|..+   .+..-+|.|+.-..|
T Consensus       268 ~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte~~~~~f~---~~f~~LPl~~~i~~~  326 (476)
T KOG0376|consen  268 FKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTEEMFNLFS---EVFIWLPLAHLINNK  326 (476)
T ss_pred             hcccCCcceeeccCCccchHHHHHhCCCcchhhhhHHHHHHhhh---hhhccccchhhhcCc
Confidence            55567899999999999999999999999999999999999998   777889999887776

>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

Probab=99.66  E-value=5.9e-16  Score=118.62  Aligned_cols=83  Identities=37%  Similarity=0.636  Sum_probs=78.0

Q ss_pred             ccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecCC-CCC
Q 016973          183 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP-IQW  261 (379)
Q Consensus       183 W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~-~~W  261 (379)
                      |+|+++.|+|+|+++++.++++.|+|++++|+|++...++..|.+.++|+++|+|++|++++.+++|+|+|.|+.+ ..|
T Consensus         1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~~W   80 (84)
T cd06463           1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEPGEWW   80 (84)
T ss_pred             CcccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCCCCCC
Confidence            9999999999999999999999999999999999876556689999999999999999999999999999999988 899


Q ss_pred             Cccc
Q 016973          262 SSLE  265 (379)
Q Consensus       262 ~~L~  265 (379)
                      ++|+
T Consensus        81 ~~l~   84 (84)
T cd06463          81 PRLE   84 (84)
T ss_pred             cccC
Confidence            9985

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of

>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins

Probab=99.66  E-value=5.5e-16  Score=119.68  Aligned_cols=82  Identities=16%  Similarity=0.329  Sum_probs=71.7

Q ss_pred             ccccccCCeEEEEEEe-CCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCc-EEEEEEeecCC
Q 016973          181 HEFYQKPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKAEP  258 (379)
Q Consensus       181 ~~W~Qt~~~V~i~i~~-k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~-kiei~L~K~~~  258 (379)
                      |+|+||.+.|+|+|++ +++.+++++|.|++++|.|.+.  ++ ...+.++||+.|+|+.|+|++... +|+|+|.|++.
T Consensus         1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~--~~-~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~~~   77 (85)
T cd06493           1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALK--DQ-APLLEGKLYSSIDHESSTWIIKENKSLEVSLIKKDE   77 (85)
T ss_pred             CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeC--CC-CeEEeCcccCcccccCcEEEEeCCCEEEEEEEECCC
Confidence            7899999999999999 5899999999999999999874  33 344778999999999999999655 79999999986


Q ss_pred             -CCCCccc
Q 016973          259 -IQWSSLE  265 (379)
Q Consensus       259 -~~W~~L~  265 (379)
                       ..|++|.
T Consensus        78 ~~~W~~L~   85 (85)
T cd06493          78 GPTWPELV   85 (85)
T ss_pred             CccccccC
Confidence             5999983

NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.65  E-value=5.7e-15  Score=125.63  Aligned_cols=116  Identities=13%  Similarity=0.152  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      .++..|..++..|+|++|+..|.+++..+|.+..+++++|.++..+|++++|+..|.+++.++|.++.+++++|.++..+
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~  105 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM  105 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence            46678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      |++++|+.+|++++.++|++......++.++..+..
T Consensus       106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~  141 (144)
T PRK15359        106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT  141 (144)
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence            999999999999999999999998888888776654

>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins

Probab=99.64  E-value=1e-15  Score=118.19  Aligned_cols=81  Identities=25%  Similarity=0.352  Sum_probs=73.7

Q ss_pred             ccccccCCeEEEEEEe-CCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeC-cEEEEEEeecCC
Q 016973          181 HEFYQKPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAKAEP  258 (379)
Q Consensus       181 ~~W~Qt~~~V~i~i~~-k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~-~kiei~L~K~~~  258 (379)
                      |.|+|+.+.|+|+|.+ +++.++++.|+|++++|+|++..   ..+.+...||++|+|++|+|++.+ ++|+|+|.|+++
T Consensus         1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~---~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~~   77 (85)
T cd06467           1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKG---GEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKRNE   77 (85)
T ss_pred             CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECC---CCceEcCcccCceeEcCCEEEEeCCCEEEEEEEECCC
Confidence            6899999999999987 46889999999999999999852   357788899999999999999999 999999999997


Q ss_pred             -CCCCcc
Q 016973          259 -IQWSSL  264 (379)
Q Consensus       259 -~~W~~L  264 (379)
                       ..|++|
T Consensus        78 ~~~W~~L   84 (85)
T cd06467          78 GEWWPSL   84 (85)
T ss_pred             Ccccccc
Confidence             799987

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.59  E-value=5.3e-14  Score=119.18  Aligned_cols=118  Identities=16%  Similarity=0.124  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      +.++..|..++..|++++|..+|.-++.++|.++..|+++|.|+..+|+|.+|+..|.+|+.++|+++.++++.|+|++.
T Consensus        36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~  115 (157)
T PRK15363         36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA  115 (157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +|+.+.|+.+|+.++.+...+++......+++..|...
T Consensus       116 lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~~l  153 (157)
T PRK15363        116 CDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQL  153 (157)
T ss_pred             cCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHh
Confidence            99999999999999999877777777777777666654

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=2.5e-14  Score=136.30  Aligned_cols=119  Identities=24%  Similarity=0.406  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRAIELE   66 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---------------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~   66 (379)
                      |......|+.+|+.|+|..|+..|.+|+..-...               ..+++|+|.||+++++|.+|+..+.++|.++
T Consensus       208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~  287 (397)
T KOG0543|consen  208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD  287 (397)
T ss_pred             HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence            5567889999999999999999999999884422               4678999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           67 PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        67 p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      |.+.+|+||+|.+|..+|+|+.|+..|+++++++|+|..+...+..|..+++.+
T Consensus       288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~  341 (397)
T KOG0543|consen  288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY  341 (397)
T ss_pred             CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999888876

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.57  E-value=3.9e-14  Score=122.80  Aligned_cols=118  Identities=34%  Similarity=0.482  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK   76 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~-----~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~l   76 (379)
                      ++.+...|+.+|.+|+|.+|..-|+.||.+-|..     ..+|.+||.|+++++..+.|+.+|.+||+++|.+.+|+.|+
T Consensus        95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR  174 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR  174 (271)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence            5678899999999999999999999999998875     57899999999999999999999999999999999999999


Q ss_pred             HHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        77 a~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      |.+|..+..|++|+..|.+.++++|...++...+.++...+..
T Consensus       175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~e  217 (271)
T KOG4234|consen  175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINE  217 (271)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHH
Confidence            9999999999999999999999999999888888777655544

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=1.5e-14  Score=141.23  Aligned_cols=114  Identities=30%  Similarity=0.496  Sum_probs=111.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (379)
Q Consensus         1 ~A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~   80 (379)
                      |+..+..+|+.+|..|+|+.|+.+|+.+|.++|.|..+|.+|+.||..+|+|++|++|..++++++|..+++|.|+|.++
T Consensus         1 ~a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~   80 (539)
T KOG0548|consen    1 KAVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAAL   80 (539)
T ss_pred             ChhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 016973           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (379)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (379)
                      +-+|+|++|+..|.++++.+|+|..++..+..+.
T Consensus        81 ~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   81 FGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             HhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            9999999999999999999999999999998887

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.54  E-value=3.3e-13  Score=112.77  Aligned_cols=116  Identities=18%  Similarity=0.301  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..++..|..++..|++++|+..|++++..+|.+..+++++|.|++.+|++++|+..+.+++.++|.++..++.+|.+|..
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA   97 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA  118 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~  118 (379)
                      +|++++|+..|+++++++|++........++...+.
T Consensus        98 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  133 (135)
T TIGR02552        98 LGEPESALKALDLAIEICGENPEYSELKERAEAMLE  133 (135)
T ss_pred             cCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence            999999999999999999999998888877776553

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins

Probab=99.52  E-value=6.3e-14  Score=109.38  Aligned_cols=81  Identities=26%  Similarity=0.519  Sum_probs=71.7

Q ss_pred             cccccccCCeEEEEE-EeCCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcE-EEEEEeecC
Q 016973          180 MHEFYQKPEEVVVTV-FAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTK-VEIRLAKAE  257 (379)
Q Consensus       180 ~~~W~Qt~~~V~i~i-~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~k-iei~L~K~~  257 (379)
                      .|.|+||.+.|+|+| +.+|++.+++.|.|+.++|+|.+.   |.. .+..+||+.|+|+.|+|++.+.+ |+|.|.|.+
T Consensus         7 ~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~---g~~-~l~G~L~~~I~~destWtled~k~l~I~L~K~~   82 (93)
T cd06494           7 WGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVK---GQE-VLKGKLFDSVVADECTWTLEDRKLIRIVLTKSN   82 (93)
T ss_pred             CcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEEC---CEE-EEcCcccCccCcccCEEEEECCcEEEEEEEeCC
Confidence            388999999999999 557899999999999999999984   444 57789999999999999999998 699999986


Q ss_pred             CC---CCCcc
Q 016973          258 PI---QWSSL  264 (379)
Q Consensus       258 ~~---~W~~L  264 (379)
                      ..   .|++|
T Consensus        83 ~~~~~~W~sl   92 (93)
T cd06494          83 RDAGNCWKSL   92 (93)
T ss_pred             CCCCcccccc
Confidence            54   89987

Little is known about the function of the proteins in this subgroup.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.50  E-value=8.2e-14  Score=129.50  Aligned_cols=117  Identities=26%  Similarity=0.340  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      .++.++|+.||++|.|++||.||.+++..+|.|+.++.+||.+|+++++|..|..||..|+.++..+.++|-|+|.+-+.
T Consensus        98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~  177 (536)
T KOG4648|consen   98 SEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES  177 (536)
T ss_pred             HHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      +|...+|...++.+++|.|++.++...++.+...+..
T Consensus       178 Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~  214 (536)
T KOG4648|consen  178 LGNNMEAKKDCETVLALEPKNIELKKSLARINSLRER  214 (536)
T ss_pred             HhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhh
Confidence            9999999999999999999999888887777654443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.45  E-value=2.8e-12  Score=122.11  Aligned_cols=108  Identities=21%  Similarity=0.149  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +..++.+|..+...|++.+|+..|++++.++|+++.+|+++|.++..+|++++|+..|.++++++|++..+++++|.+++
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~  143 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY  143 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHH
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNL  109 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~  109 (379)
                      ..|++++|+..|+++++++|+++....|
T Consensus       144 ~~g~~~eA~~~~~~al~~~P~~~~~~~~  171 (296)
T PRK11189        144 YGGRYELAQDDLLAFYQDDPNDPYRALW  171 (296)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            9999999999999999999999853333

>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]

Probab=99.44  E-value=3.4e-13  Score=119.47  Aligned_cols=91  Identities=33%  Similarity=0.492  Sum_probs=83.0

Q ss_pred             cccccccccccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEc-CCCceeeeccccccccccCcceEEEeCcEEE
Q 016973          172 PKYRFQILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKIIPAKCRYEVLSTKVE  250 (379)
Q Consensus       172 ~~~~~~~~~~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~-~~~~~~~~~~~L~~~I~p~~s~~~v~~~kie  250 (379)
                      .+.|     |||.||+..|+|+||.++..++...|+.....|.|++.. .++..|.+.++|++.|++++|++.++.+|||
T Consensus       213 ~~cR-----~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~gna~fd~d~kLwgvvnve~s~v~m~~tkVE  287 (320)
T KOG1667|consen  213 VKCR-----HDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGFGNASFDLDYKLWGVVNVEESSVVMGETKVE  287 (320)
T ss_pred             ccch-----hhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecCCCceeeccceeeeeechhhceEEeecceEE
Confidence            3567     999999999999999999888888999999889888766 4566788899999999999999999999999


Q ss_pred             EEEeecCCCCCCccccC
Q 016973          251 IRLAKAEPIQWSSLEFS  267 (379)
Q Consensus       251 i~L~K~~~~~W~~L~~~  267 (379)
                      |+|+|++++.|.+|+..
T Consensus       288 Isl~k~ep~sWa~Le~p  304 (320)
T KOG1667|consen  288 ISLKKAEPGSWARLEFP  304 (320)
T ss_pred             EEEeccCCCCcccccCC
Confidence            99999999999999975

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=1.3e-12  Score=126.47  Aligned_cols=119  Identities=24%  Similarity=0.398  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      |.++..+||-+|++|+|++||++|++||++.|+.+.+|.||+.||..+|++++.++++.+|++++|++.++++|++.++.
T Consensus       115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E  194 (606)
T KOG0547|consen  115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE  194 (606)
T ss_pred             HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHhh
Q 016973           82 KLEEYETAKVALEKGASLA-PGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~-p~~~~~~~~l~~~~~~l~~~  120 (379)
                      .+|++++|+....-..-+. =.+.+....+.++..+++..
T Consensus       195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~  234 (606)
T KOG0547|consen  195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMK  234 (606)
T ss_pred             hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHH
Confidence            9999999998876433222 24555555666665555554

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.42  E-value=6.6e-12  Score=112.50  Aligned_cols=112  Identities=17%  Similarity=0.168  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQAS-IKLQN--FTEAVADANRAIELEPSMSKAYWRKAT   78 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~-~~lg~--~~eAl~~~~~Al~l~p~~~~a~~~la~   78 (379)
                      ++.|+..|..+...|++++|+.+|.+++.++|+++.++..+|.++ ...|+  +++|+..++++++++|++..+++.+|.
T Consensus        73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~  152 (198)
T PRK10370         73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLAS  152 (198)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence            457889999999999999999999999999999999999999985 67787  599999999999999999999999999


Q ss_pred             HHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973           79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (379)
Q Consensus        79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (379)
                      +++.+|+|++|+.+|+++++++|.+..-...+..+
T Consensus       153 ~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~i  187 (198)
T PRK10370        153 DAFMQADYAQAIELWQKVLDLNSPRVNRTQLVESI  187 (198)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence            99999999999999999999998776655555444

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=2.4e-12  Score=122.45  Aligned_cols=117  Identities=27%  Similarity=0.507  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~----~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~   78 (379)
                      ..+...|+.+|+.|+|..|.++|+++|.++|++    +.+|.+||.+..++|+..+|+.+++.|+.|++...++++++|.
T Consensus       250 e~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~  329 (486)
T KOG0550|consen  250 EVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRAN  329 (486)
T ss_pred             HHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence            356788999999999999999999999999987    6789999999999999999999999999999999999999999


Q ss_pred             HHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      |+..+++|++|++.|++|.++..+ ....+.+.+++..|++.
T Consensus       330 c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkS  370 (486)
T KOG0550|consen  330 CHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKS  370 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHh
Confidence            999999999999999999999887 66777777777777754

>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins

Probab=99.37  E-value=3.8e-12  Score=98.39  Aligned_cols=82  Identities=22%  Similarity=0.285  Sum_probs=71.5

Q ss_pred             ccccccCCeEEEEEEeCC---CCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeC-cEEEEEEeec
Q 016973          181 HEFYQKPEEVVVTVFAKG---IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAKA  256 (379)
Q Consensus       181 ~~W~Qt~~~V~i~i~~k~---~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~-~kiei~L~K~  256 (379)
                      |.|.||.+.|+|+|.++.   ++..++.|+++.++|+|.++   |....++.+||+.|+++.|+|.+-+ +.|+|+|.|.
T Consensus         1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~---g~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~K~   77 (87)
T cd06492           1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLK---GQPPIIDGELYNEVKVEESSWLIEDGKVVTVNLEKI   77 (87)
T ss_pred             CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEEC---CCceEEeCcccCcccccccEEEEeCCCEEEEEEEEC
Confidence            679999999999998742   77899999999999999875   4456789999999999999999977 4799999999


Q ss_pred             CC-CCCCccc
Q 016973          257 EP-IQWSSLE  265 (379)
Q Consensus       257 ~~-~~W~~L~  265 (379)
                      .. ..|++|.
T Consensus        78 ~~~~wW~~l~   87 (87)
T cd06492          78 NKMEWWSRLV   87 (87)
T ss_pred             CCCccccccC
Confidence            76 6899873

Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.36  E-value=2.2e-11  Score=98.70  Aligned_cols=108  Identities=15%  Similarity=0.104  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR   75 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~---~~a~~~   75 (379)
                      ++.++..|..++..|+|++|+..|.+++..+|.+   ..+++.+|.++++.|++++|+..|..++..+|++   +.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            5678999999999999999999999999999876   5789999999999999999999999999998874   688999


Q ss_pred             HHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHH
Q 016973           76 KATACMKLEEYETAKVALEKGASLAPGDSRFTNL  109 (379)
Q Consensus        76 la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~  109 (379)
                      +|.++..+|++++|+..|.+++...|++......
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  115 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA  115 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence            9999999999999999999999999998865543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.34  E-value=2.7e-12  Score=127.11  Aligned_cols=119  Identities=19%  Similarity=0.164  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      ++++++.|+++-..+.|+.|+.+|.+|+.+.|+++.++.++|.+|+.+|.++-||..|++|+.++|+++.+|.++|.++-
T Consensus       252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALk  331 (966)
T KOG4626|consen  252 LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALK  331 (966)
T ss_pred             hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH
Confidence            46888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      ..|+..+|..+|.+|+.+.|++.+....++.+...++..
T Consensus       332 d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~  370 (966)
T KOG4626|consen  332 DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI  370 (966)
T ss_pred             hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence            999999999999999999999988888888887766554

>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins

Probab=99.33  E-value=1.1e-11  Score=98.24  Aligned_cols=88  Identities=19%  Similarity=0.241  Sum_probs=74.5

Q ss_pred             cccccccCCeEEEEEEeC-CC-CCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCc-EEEEEEeec
Q 016973          180 MHEFYQKPEEVVVTVFAK-GI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKA  256 (379)
Q Consensus       180 ~~~W~Qt~~~V~i~i~~k-~~-~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~-kiei~L~K~  256 (379)
                      +|.|.||.+.|.|+|.++ ++ +..++.|+|+.++|.|.+...++..-.+..+||+.|+++.|+|++.+. .|+|+|.|.
T Consensus         6 ~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~~i~G~L~~~V~~des~Wtled~~~l~I~L~K~   85 (102)
T cd06495           6 NYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVLMEGEFTHKINTENSLWSLEPGKCVLLSLSKC   85 (102)
T ss_pred             ceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCceEEeCcccCcccCccceEEEeCCCEEEEEEEEC
Confidence            388999999999999886 43 579999999999999998743333335788999999999999999885 589999999


Q ss_pred             CCCCCCccccC
Q 016973          257 EPIQWSSLEFS  267 (379)
Q Consensus       257 ~~~~W~~L~~~  267 (379)
                      ....|++|...
T Consensus        86 ~~~wW~~v~~g   96 (102)
T cd06495          86 SEVWWNAVLKG   96 (102)
T ss_pred             CCcccchhhCC
Confidence            77789999764

Little is known about the function of the proteins in this subgroup.

>PRK15331 chaperone protein SicA; Provisional

Probab=99.31  E-value=4.8e-11  Score=101.68  Aligned_cols=116  Identities=11%  Similarity=0.024  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      +.++..|..+|..|+|++|..+|.-+...++.++.+++.+|.|+..+++|++|+..|..|..++++++..+|+.|+||+.
T Consensus        38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~  117 (165)
T PRK15331         38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL  117 (165)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      +|+...|+.+|..++. .|.+..+...-......|..
T Consensus       118 l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~  153 (165)
T PRK15331        118 MRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKT  153 (165)
T ss_pred             hCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHc
Confidence            9999999999999988 46655555444444444443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.31  E-value=4.3e-11  Score=125.26  Aligned_cols=111  Identities=18%  Similarity=0.221  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      .+...|..++..|++++|+..|+++|.++|.+...|+.+|.++..+|++++|+.+|.+++.++|.++.+++.+|.+++.+
T Consensus       333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~  412 (615)
T TIGR00990       333 ALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIK  412 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            34555555555666666666666666655555555555555555555566666655555555555555555555555555


Q ss_pred             cCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 016973           84 EEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (379)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (379)
                      |+|++|+.+|++++.++|++......++.+.
T Consensus       413 g~~~~A~~~~~kal~l~P~~~~~~~~la~~~  443 (615)
T TIGR00990       413 GEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ  443 (615)
T ss_pred             CCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence            5555555555555555555555444444433

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.31  E-value=4.1e-11  Score=125.40  Aligned_cols=118  Identities=14%  Similarity=0.142  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..++..|.+++..|+|++|+..|++++..+|+++.+++.+|.+++.+|++++|+.+|.+++.++|.+..+++.+|.+++.
T Consensus       366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~  445 (615)
T TIGR00990       366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK  445 (615)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +|++++|+..|++++.+.|+++.+...++.+...++..
T Consensus       446 ~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~  483 (615)
T TIGR00990       446 EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKF  483 (615)
T ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCH
Confidence            99999999999999999999999988888888777665

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.30  E-value=1.8e-11  Score=121.46  Aligned_cols=113  Identities=17%  Similarity=0.173  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      |....+.|..+-++|++++|+.+|++||++.|..+++|.++|..|-.+|+..+|+++|.+|+.++|.+++++-++|.+|.
T Consensus       388 aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k  467 (966)
T KOG4626|consen  388 AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK  467 (966)
T ss_pred             hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (379)
                      ..|+..+|+..|+.|+++.|+.+++...+..|.
T Consensus       468 DsGni~~AI~sY~~aLklkPDfpdA~cNllh~l  500 (966)
T KOG4626|consen  468 DSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL  500 (966)
T ss_pred             ccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence            999999999999999999999888665555443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.28  E-value=6.9e-11  Score=89.53  Aligned_cols=99  Identities=32%  Similarity=0.493  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      .++..|..++..|++.+|+..|.+++...|.+..+++.+|.++...+++++|+..+.+++.+.|.+..+++.+|.++..+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCC
Q 016973           84 EEYETAKVALEKGASLAPG  102 (379)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~  102 (379)
                      |+++.|...+.+++.++|.
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999999988773

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.24  E-value=3.5e-11  Score=88.58  Aligned_cols=66  Identities=35%  Similarity=0.519  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhcCC
Q 016973           36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE-EYETAKVALEKGASLAP  101 (379)
Q Consensus        36 ~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg-~y~~A~~~~~~a~~l~p  101 (379)
                      +..|..+|.+++.+|+|++|+.+|.+++.++|+++.+|+++|.+|+.+| ++.+|+.+|+++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            3444444444444455555555555555555444445555555554444 34455555555444444

...

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=1.7e-11  Score=109.14  Aligned_cols=100  Identities=29%  Similarity=0.476  Sum_probs=96.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (379)
Q Consensus         1 ~A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~   80 (379)
                      ++.++..+|+.+|....|..|+.+|.+||.++|..+.+|.+||.||+++++++.+..++.+|+++.|+...++|.+|.++
T Consensus         9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~   88 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL   88 (284)
T ss_pred             HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence            47789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCHHHHHHHHHHHHhcC
Q 016973           81 MKLEEYETAKVALEKGASLA  100 (379)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~  100 (379)
                      .....|..|+..+++++.+.
T Consensus        89 l~s~~~~eaI~~Lqra~sl~  108 (284)
T KOG4642|consen   89 LQSKGYDEAIKVLQRAYSLL  108 (284)
T ss_pred             HhhccccHHHHHHHHHHHHH
Confidence            99999999999999997763

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.24  E-value=1.3e-11  Score=123.56  Aligned_cols=119  Identities=18%  Similarity=0.275  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      +.|...||++--+++++.||++|.+|+.++|....+|..+|+=+.....|+.|..+|+.|+.++|++..|||.+|.+|.+
T Consensus       422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K  501 (638)
T KOG1126|consen  422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK  501 (638)
T ss_pred             HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET  121 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~  121 (379)
                      +++|+.|.-.|++|+.++|.+......+..++.+++...
T Consensus       502 qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d  540 (638)
T KOG1126|consen  502 QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKD  540 (638)
T ss_pred             cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhh
Confidence            999999999999999999999999999999988888863

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.23  E-value=4.4e-11  Score=88.06  Aligned_cols=66  Identities=30%  Similarity=0.502  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCC
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEP   67 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg-~~~eAl~~~~~Al~l~p   67 (379)
                      |..++..|..++..|+|++|+..|+++|+++|+++.+++++|.||..+| ++.+|+.+++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            6789999999999999999999999999999999999999999999999 79999999999999987

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.23  E-value=3e-10  Score=99.38  Aligned_cols=110  Identities=19%  Similarity=0.217  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~   78 (379)
                      +..++..|..+...|++++|+.+|.+++...++.   ..+++++|.++.++|++++|+..+.+++.+.|.+..+++.+|.
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  114 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            4568899999999999999999999999987653   5689999999999999999999999999999999999999999


Q ss_pred             HHHhccC--------------HHHHHHHHHHHHhcCCCCh-HHHHHHH
Q 016973           79 ACMKLEE--------------YETAKVALEKGASLAPGDS-RFTNLIK  111 (379)
Q Consensus        79 ~~~~lg~--------------y~~A~~~~~~a~~l~p~~~-~~~~~l~  111 (379)
                      +|..+|+              |.+|+.++++++.++|++. .+..|+.
T Consensus       115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~  162 (172)
T PRK02603        115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLK  162 (172)
T ss_pred             HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHH
Confidence            9999988              6889999999999999874 3444444

>PRK12370 invasion protein regulator; Provisional

Probab=99.19  E-value=3.2e-10  Score=117.16  Aligned_cols=89  Identities=12%  Similarity=0.049  Sum_probs=44.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHH
Q 016973           16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEK   95 (379)
Q Consensus        16 g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~   95 (379)
                      +++++|+..++++++++|+++.++..+|.++..+|++++|+..|++|+.++|+++.+++.+|.+|..+|++++|+..|++
T Consensus       318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~  397 (553)
T PRK12370        318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE  397 (553)
T ss_pred             hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            34445555555555555555555444555544455555555555555555555555555555555555555555555555


Q ss_pred             HHhcCCCCh
Q 016973           96 GASLAPGDS  104 (379)
Q Consensus        96 a~~l~p~~~  104 (379)
                      +++++|.+.
T Consensus       398 Al~l~P~~~  406 (553)
T PRK12370        398 CLKLDPTRA  406 (553)
T ss_pred             HHhcCCCCh
Confidence            555555443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.18  E-value=4.9e-10  Score=121.64  Aligned_cols=114  Identities=14%  Similarity=0.043  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..+...|.++.+.|++++|+..|.+++.++|+++.++.++|.++..+|++++|+..|.+|+.++|+++.+++.+|.++..
T Consensus       610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~  689 (987)
T PRK09782        610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR  689 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (379)
                      +|++++|+.+|+++++++|++..+...+..+...
T Consensus       690 lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~  723 (987)
T PRK09782        690 LDDMAATQHYARLVIDDIDNQALITPLTPEQNQQ  723 (987)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHH
Confidence            9999999999999999999987766555554443

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=1.4e-10  Score=107.84  Aligned_cols=102  Identities=26%  Similarity=0.430  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA   77 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~----~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la   77 (379)
                      |..+...||.||+.++|..|+.+|++.|.....+    +.+|.|||.|.+.+|+|..||.|+.+|+.++|.+.++++|-|
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A  160 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA  160 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence            6788999999999999999999999999985544    678999999999999999999999999999999999999999


Q ss_pred             HHHHhccCHHHHHHHHHHHHhcCCCC
Q 016973           78 TACMKLEEYETAKVALEKGASLAPGD  103 (379)
Q Consensus        78 ~~~~~lg~y~~A~~~~~~a~~l~p~~  103 (379)
                      .|++.++++++|..+++..+.++-..
T Consensus       161 kc~~eLe~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  161 KCLLELERFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            99999999888888887776665433

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.18  E-value=1.4e-10  Score=116.18  Aligned_cols=118  Identities=19%  Similarity=0.272  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      .+|+..|.+|++.++|+.|.-.|++|+.++|.+...+...|..+.++|+.++|+..+++|+.++|.++...|.+|.+++.
T Consensus       490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~  569 (638)
T KOG1126|consen  490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS  569 (638)
T ss_pred             HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +++|++|+..|++..++.|++..+...++++..+++..
T Consensus       570 ~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~  607 (638)
T KOG1126|consen  570 LGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT  607 (638)
T ss_pred             hcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc
Confidence            99999999999999999999999999999999988886

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=1.7e-10  Score=111.92  Aligned_cols=120  Identities=23%  Similarity=0.255  Sum_probs=109.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (379)
Q Consensus         1 ~A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~   80 (379)
                      ||.++...|..+|-.|++-.|...|+.+|.++|.+..+|..||.+|...++-++...+|.+|..++|.++.+||.+|+++
T Consensus       325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~  404 (606)
T KOG0547|consen  325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR  404 (606)
T ss_pred             HHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +-+++|++|+..|++|++|+|++.-....+.-+.-++.+.
T Consensus       405 flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~  444 (606)
T KOG0547|consen  405 FLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKI  444 (606)
T ss_pred             HHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999876555555444444443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.18  E-value=2e-10  Score=107.15  Aligned_cols=103  Identities=21%  Similarity=0.278  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      +..+..|..++..|+|..|+..|..|++.+|++..++++||.+|+.+|+-.-|+.|+.+.+++.|++..+...+|.++..
T Consensus        39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK  118 (504)
T KOG0624|consen   39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK  118 (504)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChH
Q 016973           83 LEEYETAKVALEKGASLAPGDSR  105 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~  105 (379)
                      +|++++|...|.+++..+|++..
T Consensus       119 ~Gele~A~~DF~~vl~~~~s~~~  141 (504)
T KOG0624|consen  119 QGELEQAEADFDQVLQHEPSNGL  141 (504)
T ss_pred             cccHHHHHHHHHHHHhcCCCcch
Confidence            99999999999999999996654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.17  E-value=1.8e-10  Score=97.93  Aligned_cols=96  Identities=21%  Similarity=0.209  Sum_probs=89.9

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 016973           22 YDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP  101 (379)
Q Consensus        22 l~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p  101 (379)
                      ..+|+++++++|++   ++.+|.++.++|++++|+..|.+++.++|.+..+|+.+|.++..+|++++|+.+|++++.++|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            46799999999885   667999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHhh
Q 016973          102 GDSRFTNLIKECEERIAEE  120 (379)
Q Consensus       102 ~~~~~~~~l~~~~~~l~~~  120 (379)
                      ++......++.|...+++.
T Consensus        90 ~~~~a~~~lg~~l~~~g~~  108 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEP  108 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCH
Confidence            9999999999988877765

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.17  E-value=6.8e-11  Score=90.80  Aligned_cols=82  Identities=27%  Similarity=0.406  Sum_probs=73.5

Q ss_pred             HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHH
Q 016973           14 IDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV   91 (379)
Q Consensus        14 ~~g~y~~Al~~y~~al~~~p~--~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~   91 (379)
                      ..|+|+.|+..|++++...|.  +..+++.+|.||+++|+|++|+..+++ +.+++.+...++.+|.|++.+|+|++|+.
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            368999999999999999995  466788899999999999999999999 88888888999999999999999999999


Q ss_pred             HHHHH
Q 016973           92 ALEKG   96 (379)
Q Consensus        92 ~~~~a   96 (379)
                      .|+++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99875

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.17  E-value=1.1e-09  Score=98.11  Aligned_cols=117  Identities=19%  Similarity=0.156  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +..++..|..++..|+|++|+..|.+++..+|.+..++..+|.++..+|++++|+..+.+++.++|.+..+++.+|.+++
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999999999998899999999999


Q ss_pred             hccCHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHH
Q 016973           82 KLEEYETAKVALEKGASLA--PGDSRFTNLIKECEERIA  118 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~--p~~~~~~~~l~~~~~~l~  118 (379)
                      .+|++++|+..|++++...  +........++.+...++
T Consensus       111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  149 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG  149 (234)
T ss_pred             HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC
Confidence            9999999999999988754  233334444444444333

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.17  E-value=5.1e-10  Score=99.57  Aligned_cols=118  Identities=16%  Similarity=0.045  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      ++..++.|.-|+..|++..|...+++||+.+|++..++..||..|.++|+.+.|-+.|++|+.++|++..++.+.|--++
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHh
Q 016973           82 KLEEYETAKVALEKGASL--APGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l--~p~~~~~~~~l~~~~~~l~~  119 (379)
                      .+|+|++|...|++|+..  .+.-......+..|..+.++
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq  154 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ  154 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC
Confidence            999999999999988864  33444455556666554333

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.16  E-value=4.9e-10  Score=117.38  Aligned_cols=118  Identities=12%  Similarity=-0.005  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      ++.++..|......|.|++|+.++..++++.|++..++.++|.++.+++++++|+..+++++..+|+++.+++.+|.++.
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~  165 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD  165 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            45677778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      ++|+|++|+.+|++++..+|++...+..++.+...+++
T Consensus       166 ~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~  203 (694)
T PRK15179        166 EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA  203 (694)
T ss_pred             HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence            88888888888888888777777766666665554333

>PRK12370 invasion protein regulator; Provisional

Probab=99.15  E-value=6.5e-10  Score=114.88  Aligned_cols=119  Identities=15%  Similarity=0.038  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +..+...|..+...|++++|+.+|+++++++|+++.+++.+|.++..+|++++|+..++++++++|.++.+++.++.+++
T Consensus       338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~  417 (553)
T PRK12370        338 PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITY  417 (553)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            34677889999999999999999999999999999999999999999999999999999999999999888888888899


Q ss_pred             hccCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHhh
Q 016973           82 KLEEYETAKVALEKGASLA-PGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~-p~~~~~~~~l~~~~~~l~~~  120 (379)
                      .+|+|++|+..+++++... |+++.....++.+...+++.
T Consensus       418 ~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~  457 (553)
T PRK12370        418 YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKH  457 (553)
T ss_pred             hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCH
Confidence            9999999999999999875 78888888888888777765

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.15  E-value=8.9e-11  Score=116.00  Aligned_cols=100  Identities=21%  Similarity=0.290  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      +.....|..|+-.|+|+.|+.+|+.||..+|++..+|.++|.++..-.+..+|+..|.+|++|.|.+..++|++|++|..
T Consensus       431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN  510 (579)
T KOG1125|consen  431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN  510 (579)
T ss_pred             hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh
Confidence            34566899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCC
Q 016973           83 LEEYETAKVALEKGASLAPG  102 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~  102 (379)
                      +|.|++|..+|-.|+.+.+.
T Consensus       511 lG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  511 LGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             hhhHHHHHHHHHHHHHhhhc
Confidence            99999999999999999765

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.14  E-value=1.3e-09  Score=99.80  Aligned_cols=109  Identities=24%  Similarity=0.235  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIKLQNFTEAVADANRAIELEPSMSK---AYWR   75 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~---~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~---a~~~   75 (379)
                      ++.++..|..++..|+|++|+..|.+++..+|.++   .+++.+|.+|+.+|++++|+..|.++++..|+++.   +++.
T Consensus        33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~  112 (235)
T TIGR03302        33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL  112 (235)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence            56789999999999999999999999999999876   57899999999999999999999999999998766   7999


Q ss_pred             HHHHHHhc--------cCHHHHHHHHHHHHhcCCCChHHHHHH
Q 016973           76 KATACMKL--------EEYETAKVALEKGASLAPGDSRFTNLI  110 (379)
Q Consensus        76 la~~~~~l--------g~y~~A~~~~~~a~~l~p~~~~~~~~l  110 (379)
                      +|.+++.+        |++++|+..|++++..+|++......+
T Consensus       113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~  155 (235)
T TIGR03302       113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK  155 (235)
T ss_pred             HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence            99999987        899999999999999999987654333

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.13  E-value=7.5e-10  Score=99.21  Aligned_cols=106  Identities=14%  Similarity=0.135  Sum_probs=98.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhccC--HHHHHH
Q 016973           15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC-MKLEE--YETAKV   91 (379)
Q Consensus        15 ~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~-~~lg~--y~~A~~   91 (379)
                      .++.++++..|.++|..+|++..+|+.+|.+|..+|++++|+..|.+|+.++|+++.+++.+|.++ +..|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            567799999999999999999999999999999999999999999999999999999999999985 77788  599999


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           92 ALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        92 ~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      .|+++++++|++..+...++.+...++..
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~  160 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADY  160 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCH
Confidence            99999999999999998888887776665

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.13  E-value=2.5e-09  Score=101.86  Aligned_cols=113  Identities=14%  Similarity=0.137  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------------
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM------------   69 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~------------   69 (379)
                      +..++..|..+...|+|++|+..|+++++++|++..+++++|.+++..|++++|+.+|++++.++|++            
T Consensus        98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~  177 (296)
T PRK11189         98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAES  177 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHc
Confidence            46788999999999999999999999999999999999999999999999999999998888876632            


Q ss_pred             ----------------------------------------------------------HHHHHHHHHHHHhccCHHHHHH
Q 016973           70 ----------------------------------------------------------SKAYWRKATACMKLEEYETAKV   91 (379)
Q Consensus        70 ----------------------------------------------------------~~a~~~la~~~~~lg~y~~A~~   91 (379)
                                                                                ..+|+++|.++..+|++++|+.
T Consensus       178 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~  257 (296)
T PRK11189        178 KLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAA  257 (296)
T ss_pred             cCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence                                                                      1357788999999999999999


Q ss_pred             HHHHHHhcCC-CChHHHHHHHHHH
Q 016973           92 ALEKGASLAP-GDSRFTNLIKECE  114 (379)
Q Consensus        92 ~~~~a~~l~p-~~~~~~~~l~~~~  114 (379)
                      +|++++.++| +..+....+-.+.
T Consensus       258 ~~~~Al~~~~~~~~e~~~~~~e~~  281 (296)
T PRK11189        258 LFKLALANNVYNFVEHRYALLELA  281 (296)
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHH
Confidence            9999999997 4444444343333

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=5.2e-10  Score=108.04  Aligned_cols=113  Identities=19%  Similarity=0.269  Sum_probs=93.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHH
Q 016973            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE   87 (379)
Q Consensus         8 ~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~   87 (379)
                      .||-|--.++.+.|+.+|++||.+||....+|...|+=|..+++-..|+..|++|+.++|.+..|||.+|++|.-++-..
T Consensus       336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~  415 (559)
T KOG1155|consen  336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHF  415 (559)
T ss_pred             ehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchH
Confidence            46667777788888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           88 TAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        88 ~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      =|+.+|++|+.+.|+|+..+..++.|..++.+.
T Consensus       416 YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~  448 (559)
T KOG1155|consen  416 YALYYFQKALELKPNDSRLWVALGECYEKLNRL  448 (559)
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHHhccH
Confidence            888888888888888888888888888777765

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.11  E-value=2.6e-09  Score=95.56  Aligned_cols=117  Identities=15%  Similarity=0.151  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE--PSMSKAYWRKATAC   80 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~--p~~~~a~~~la~~~   80 (379)
                      ..+...|..++..|++++|+..|.+++...|.+..++.++|.++..+|++++|+..+.+++...  +.....++.+|.++
T Consensus        66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  145 (234)
T TIGR02521        66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA  145 (234)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence            4567788899999999999999999999999988889999999999999999999999988754  45667888889999


Q ss_pred             HhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      +.+|++++|...|.+++..+|++......+..+....++
T Consensus       146 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  184 (234)
T TIGR02521       146 LKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ  184 (234)
T ss_pred             HHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC
Confidence            999999999999999999988887766666666555444

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.11  E-value=2.8e-09  Score=99.38  Aligned_cols=111  Identities=12%  Similarity=0.003  Sum_probs=99.3

Q ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHH
Q 016973            3 TDLEKKAKEA-FIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWR   75 (379)
Q Consensus         3 ~~l~~~g~~~-~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~---~~~a~~~   75 (379)
                      ...+..|..+ +..|+|++|+..|+..+...|++   +.+++.+|.+|+..|+|++|+..|.+++...|+   .+.+++.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            4567788876 67899999999999999999998   579999999999999999999999999999886   5889999


Q ss_pred             HHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973           76 KATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (379)
Q Consensus        76 la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (379)
                      +|.++..+|++++|+..|+++++..|+.........++
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL  260 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL  260 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence            99999999999999999999999999988665544443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.10  E-value=1.7e-09  Score=111.69  Aligned_cols=118  Identities=14%  Similarity=0.122  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..++.+||.+|..|++++|..++.++|.++|.++.+|+.+|.||.++|+.++|+...-.|-.++|.+...|.+++....+
T Consensus       140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~  219 (895)
T KOG2076|consen  140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ  219 (895)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +|.+++|..+|.+|++++|.+-.+.-....+..+++..
T Consensus       220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~  257 (895)
T KOG2076|consen  220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDL  257 (895)
T ss_pred             cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChH
Confidence            99999999999999999999977666666665555543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=1.4e-09  Score=105.12  Aligned_cols=118  Identities=17%  Similarity=0.148  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      .+|--.|..++.+++-..|++.|++|++++|.+..+|+.+|++|.-++.+.=|+-+|++|+.+.|++...|..+|.||..
T Consensus       365 ~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k  444 (559)
T KOG1155|consen  365 SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEK  444 (559)
T ss_pred             HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            35667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +++.++|+.+|.+++.+...+..+.-.++++.+.++..
T Consensus       445 l~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~  482 (559)
T KOG1155|consen  445 LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL  482 (559)
T ss_pred             hccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence            99999999999999999988888899999999988876

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.09  E-value=4.1e-09  Score=91.78  Aligned_cols=103  Identities=18%  Similarity=0.210  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~   78 (379)
                      +..++..|..++..|+|++|+..|.+++.+.++.   +.+++++|.+|..+|++++|+..+.+++.++|....+++.+|.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~  114 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            4567889999999999999999999999987663   4589999999999999999999999999999999999999999


Q ss_pred             HHH-------hccCHH-------HHHHHHHHHHhcCCCCh
Q 016973           79 ACM-------KLEEYE-------TAKVALEKGASLAPGDS  104 (379)
Q Consensus        79 ~~~-------~lg~y~-------~A~~~~~~a~~l~p~~~  104 (379)
                      ++.       .+|+++       +|+..|++++.++|.+.
T Consensus       115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            999       777766       66666667778888654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.09  E-value=1e-09  Score=91.48  Aligned_cols=98  Identities=22%  Similarity=0.239  Sum_probs=92.6

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 016973           23 DLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG  102 (379)
Q Consensus        23 ~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~  102 (379)
                      ..|.+++..+|++..+++.+|.+++..|++++|+..+.+++.++|.++.+++++|.+++.+|++++|..+|++++.++|.
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHhh
Q 016973          103 DSRFTNLIKECEERIAEE  120 (379)
Q Consensus       103 ~~~~~~~l~~~~~~l~~~  120 (379)
                      +......++.+...+++.
T Consensus        84 ~~~~~~~la~~~~~~g~~  101 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEP  101 (135)
T ss_pred             ChHHHHHHHHHHHHcCCH
Confidence            999988888887776664

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

Probab=99.07  E-value=4.1e-10  Score=84.44  Aligned_cols=73  Identities=26%  Similarity=0.374  Sum_probs=67.6

Q ss_pred             ccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcC-------CCceeeeccccccccccCcceEEEeCcEEEEEEee
Q 016973          183 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-------GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK  255 (379)
Q Consensus       183 W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~-------~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K  255 (379)
                      |+|+++.|+|+|+++|+.++++.|.+.++.|.|++...       ....|.+.+.|+++|+|+++++++.+..|+|.|.|
T Consensus         1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~K   80 (80)
T cd00298           1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLPK   80 (80)
T ss_pred             CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEcC
Confidence            99999999999999999999999999999999998754       24579999999999999999999999999999987

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.06  E-value=2.8e-09  Score=115.81  Aligned_cols=111  Identities=23%  Similarity=0.296  Sum_probs=102.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHH
Q 016973            9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET   88 (379)
Q Consensus         9 g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~   88 (379)
                      +..+...|++++|+..|.+++..+|+ ..++.++|.++.++|++++|+..|.+++.++|+++.+++.+|.++..+|++++
T Consensus       583 a~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee  661 (987)
T PRK09782        583 HAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ  661 (987)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            34445569999999999999999996 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           89 AKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        89 A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      |+..|+++++++|++..+...++.+...++..
T Consensus       662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~  693 (987)
T PRK09782        662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDM  693 (987)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence            99999999999999999998888888776664

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.05  E-value=1e-09  Score=103.53  Aligned_cols=118  Identities=21%  Similarity=0.191  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..+...|..+.+.|++++|+.+|+++|..+|++..++..++.+++..|+++++...+.......|.++..+..+|.+|+.
T Consensus       147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~  226 (280)
T PF13429_consen  147 RFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ  226 (280)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc
Confidence            35678899999999999999999999999999999999999999999999999998888888888888999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +|++++|+.+|++++..+|+|+.....++.+....+..
T Consensus       227 lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~  264 (280)
T PF13429_consen  227 LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRK  264 (280)
T ss_dssp             HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----
T ss_pred             cccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999888877775

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=2.9e-09  Score=95.42  Aligned_cols=117  Identities=24%  Similarity=0.334  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNS----------AELFADRAQASIKLQNFTEAVADANRAIEL   65 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~--------~p~~----------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l   65 (379)
                      .+.+.||.+|+.|+|.+|...|..||..        .|..          ..++.|.+.|++..|+|-++++.++..+..
T Consensus       180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~  259 (329)
T KOG0545|consen  180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH  259 (329)
T ss_pred             HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            5778999999999999999999999876        3433          456899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHhh
Q 016973           66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR-FTNLIKECEERIAEE  120 (379)
Q Consensus        66 ~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~-~~~~l~~~~~~l~~~  120 (379)
                      +|.+.+|||++|.++...-+.++|.+.|..+++++|.-.. +...+..+..++.+.
T Consensus       260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek  315 (329)
T KOG0545|consen  260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEK  315 (329)
T ss_pred             CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999998665 445555555555443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.04  E-value=7e-10  Score=80.65  Aligned_cols=62  Identities=21%  Similarity=0.353  Sum_probs=31.7

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC
Q 016973           42 RAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD  103 (379)
Q Consensus        42 ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~  103 (379)
                      +|..++..|+|++|+..|+.++..+|.++.+++.+|.+++.+|++++|+..|+++++++|++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            44555555555555555555555555555555555555555555555555555555555544

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.03  E-value=5.3e-09  Score=94.79  Aligned_cols=116  Identities=19%  Similarity=0.155  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg   84 (379)
                      +..+|..++..|+|..|+..+.++....|++..+|..+|.+|.++|++++|...|.+|+++.|+.+.++-++|..|+-.|
T Consensus       103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~g  182 (257)
T COG5010         103 LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRG  182 (257)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcC
Confidence            44589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           85 EYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +++.|...+..+...-+.+..+...+..+...++..
T Consensus       183 d~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~  218 (257)
T COG5010         183 DLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDF  218 (257)
T ss_pred             CHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCCh
Confidence            999999999999999888999888888887766665

>PLN02789 farnesyltranstransferase

Probab=99.02  E-value=6.7e-09  Score=99.68  Aligned_cols=114  Identities=13%  Similarity=0.007  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDD-YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNF--TEAVADANRAIELEPSMSKAYWRKATA   79 (379)
Q Consensus         3 ~~l~~~g~~~~~~g-~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~--~eAl~~~~~Al~l~p~~~~a~~~la~~   79 (379)
                      ..+..+|.++...| ++++|+..+++++..+|++..+|.+|+.++.++++.  .+++.++.+++.++|.+..+|..+|-+
T Consensus        72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~  151 (320)
T PLN02789         72 TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWV  151 (320)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            46677788888887 578888888888888888888888888888888874  678888888888898888999999988


Q ss_pred             HHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973           80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (379)
Q Consensus        80 ~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (379)
                      +..+|+|++|+.++.++++.+|.+..++..+..+...
T Consensus       152 l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~  188 (320)
T PLN02789        152 LRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITR  188 (320)
T ss_pred             HHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHh
Confidence            8888889999999999999988888877777666443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.02  E-value=4.7e-09  Score=110.51  Aligned_cols=104  Identities=13%  Similarity=0.093  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 016973            4 DLEKKAKEAFIDDYFEL----AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA   79 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~----Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~   79 (379)
                      .++..|..++..|++++    |+..|++++.++|+++.++..+|.++..+|++++|+..+++++.++|+++.+++.+|.+
T Consensus       248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~  327 (656)
T PRK15174        248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA  327 (656)
T ss_pred             HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34556666666676664    66667777777777666677777777777777777777777777777766667777777


Q ss_pred             HHhccCHHHHHHHHHHHHhcCCCChHHH
Q 016973           80 CMKLEEYETAKVALEKGASLAPGDSRFT  107 (379)
Q Consensus        80 ~~~lg~y~~A~~~~~~a~~l~p~~~~~~  107 (379)
                      |..+|++++|+..|++++..+|++....
T Consensus       328 l~~~G~~~eA~~~l~~al~~~P~~~~~~  355 (656)
T PRK15174        328 LRQVGQYTAASDEFVQLAREKGVTSKWN  355 (656)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence            7777777777777777766666655433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.02  E-value=1.3e-09  Score=79.26  Aligned_cols=65  Identities=22%  Similarity=0.320  Sum_probs=60.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 016973            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS   70 (379)
Q Consensus         6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~   70 (379)
                      +.+|..++..|+|++|+.+|++++..+|.++.+++.+|.|+..+|++++|+..|++++.++|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999875

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.01  E-value=5.5e-09  Score=110.03  Aligned_cols=114  Identities=12%  Similarity=0.045  Sum_probs=105.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTE----AVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         7 ~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~e----Al~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..|..++..|++++|+..|.+++..+|.++.+++++|.+|..+|++++    |+..|++++.++|++..+++.+|.++..
T Consensus       217 ~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~  296 (656)
T PRK15174        217 LAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR  296 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            347788999999999999999999999999999999999999999996    8999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +|++++|+..|++++.++|++..+...++.+...+++.
T Consensus       297 ~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~  334 (656)
T PRK15174        297 TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQY  334 (656)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence            99999999999999999999998888887776655544

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=99.01  E-value=1.1e-08  Score=83.24  Aligned_cols=101  Identities=27%  Similarity=0.309  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS----MSKAYWRKAT   78 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~----~~~a~~~la~   78 (379)
                      .++-.+|..+...|+.+.|++.|.++|.+-|.++.+|.+||.++...|+.++|+.++.+|+++...    -..+|..+|.
T Consensus        44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~  123 (175)
T KOG4555|consen   44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL  123 (175)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence            456678999999999999999999999999999999999999999999999999999999999753    3578999999


Q ss_pred             HHHhccCHHHHHHHHHHHHhcCCCC
Q 016973           79 ACMKLEEYETAKVALEKGASLAPGD  103 (379)
Q Consensus        79 ~~~~lg~y~~A~~~~~~a~~l~p~~  103 (379)
                      +|..+|+-+.|...|+.+.++....
T Consensus       124 lyRl~g~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  124 LYRLLGNDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             HHHHhCchHHHHHhHHHHHHhCCHH
Confidence            9999999999999999999887643

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.00  E-value=1e-08  Score=85.63  Aligned_cols=107  Identities=22%  Similarity=0.238  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR   75 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~---~~a~~~   75 (379)
                      +..++..|..+++.|+|.+|++.|+.+....|..   ..+.+.++.+|++.++|.+|+..+++-++++|.+   .-++|.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            4689999999999999999999999999998876   5788999999999999999999999999999865   568999


Q ss_pred             HHHHHHhccC---------------HHHHHHHHHHHHhcCCCChHHHH
Q 016973           76 KATACMKLEE---------------YETAKVALEKGASLAPGDSRFTN  108 (379)
Q Consensus        76 la~~~~~lg~---------------y~~A~~~~~~a~~l~p~~~~~~~  108 (379)
                      +|.+++.+..               ...|...|++.++..|++.-+..
T Consensus        90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d  137 (142)
T PF13512_consen   90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD  137 (142)
T ss_pred             HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            9999999987               88999999999999998875543

>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]

Probab=98.99  E-value=2.3e-09  Score=90.87  Aligned_cols=85  Identities=18%  Similarity=0.213  Sum_probs=71.0

Q ss_pred             ccccccCCeEEEEEEe-CCC-CCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecCC
Q 016973          181 HEFYQKPEEVVVTVFA-KGI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP  258 (379)
Q Consensus       181 ~~W~Qt~~~V~i~i~~-k~~-~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~  258 (379)
                      |.|+||-+.|.|.|.+ +|. +..+|.|.+..++|.|.++   |.+-.+..+|++.|+++.|.|+|-+.++.|++.|+..
T Consensus        21 y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~k---g~~~ildG~L~~~vk~des~WtiEd~k~i~i~l~K~~   97 (179)
T KOG2265|consen   21 YTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLK---GQPPILDGELSHSVKVDESTWTIEDGKMIVILLKKSN   97 (179)
T ss_pred             eeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecC---CCCceecCccccccccccceEEecCCEEEEEEeeccc
Confidence            7799999999999855 565 7899999999999999876   5556788999999999999999999976666655544


Q ss_pred             --CCCCccccCC
Q 016973          259 --IQWSSLEFSK  268 (379)
Q Consensus       259 --~~W~~L~~~~  268 (379)
                        ..|.+|...+
T Consensus        98 ~~eWW~~ll~ge  109 (179)
T KOG2265|consen   98 KMEWWDSLLEGE  109 (179)
T ss_pred             hHHHHHHHHcCC
Confidence              7899987653

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=2.4e-08  Score=92.67  Aligned_cols=116  Identities=21%  Similarity=0.172  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ---NFTEAVADANRAIELEPSMSKAYWRKAT   78 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg---~~~eAl~~~~~Al~l~p~~~~a~~~la~   78 (379)
                      ++-|...|..|+..|++..|+..|.+|+++.|+|++.+..+|.+++...   .-.++...+.+++.++|.+..+.+.+|.
T Consensus       156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~  235 (287)
T COG4235         156 AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAF  235 (287)
T ss_pred             chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence            3568889999999999999999999999999999999999999988774   3578999999999999999999999999


Q ss_pred             HHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973           79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (379)
Q Consensus        79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l  117 (379)
                      .+|..|+|.+|...++..+.+.|.+..-...+.+.....
T Consensus       236 ~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~  274 (287)
T COG4235         236 AAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARA  274 (287)
T ss_pred             HHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence            999999999999999999999998876555555443333

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.97  E-value=9.8e-09  Score=91.48  Aligned_cols=114  Identities=15%  Similarity=0.105  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE--PSMSKAYWRKATAC   80 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~--p~~~~a~~~la~~~   80 (379)
                      ..+..+|..|...|+.+.|-+.|.+||.++|++.+++.|.|..++.+|+|++|...|++|+..-  +..+..+-++|.|.
T Consensus        70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Ca  149 (250)
T COG3063          70 LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCA  149 (250)
T ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHH
Confidence            4567789999999999999999999999999999999999999999999999999999998652  45678999999999


Q ss_pred             HhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (379)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (379)
                      ++.|+++.|...|+++++++|+.+.....+.+.+..
T Consensus       150 l~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~  185 (250)
T COG3063         150 LKAGQFDQAEEYLKRALELDPQFPPALLELARLHYK  185 (250)
T ss_pred             hhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh
Confidence            999999999999999999999998766666555443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.95  E-value=1.7e-08  Score=105.88  Aligned_cols=117  Identities=13%  Similarity=0.033  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +.+....|..+.+.+.+++|+..++++|..+|+++.+++.+|.|+.++|+|++|+..|++++..+|++..++..+|.++.
T Consensus       120 ~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~  199 (694)
T PRK15179        120 SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLT  199 (694)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHH
Q 016973           82 KLEEYETAKVALEKGASLAPG-DSRFTNLIKECEERIA  118 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~-~~~~~~~l~~~~~~l~  118 (379)
                      .+|+.++|..+|++++.+... ...+...+..+...+.
T Consensus       200 ~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  237 (694)
T PRK15179        200 RRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNADLA  237 (694)
T ss_pred             HcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence            999999999999999998654 3334455555544433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.94  E-value=1.5e-08  Score=92.71  Aligned_cols=118  Identities=15%  Similarity=0.077  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------cCHHHHHHHHHHHHHhCCCCHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE---LFADRAQASIKL--------QNFTEAVADANRAIELEPSMSK   71 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~---~~~~ra~~~~~l--------g~~~eAl~~~~~Al~l~p~~~~   71 (379)
                      ..++..|..++..|++++|+..|+++++.+|+++.   +++.+|.|++.+        |++++|+..+.+++..+|.+..
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  150 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY  150 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh
Confidence            35688999999999999999999999999998765   789999999987        8899999999999999998754


Q ss_pred             HH-----------------HHHHHHHHhccCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHHHhh
Q 016973           72 AY-----------------WRKATACMKLEEYETAKVALEKGASLAPGDS---RFTNLIKECEERIAEE  120 (379)
Q Consensus        72 a~-----------------~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~---~~~~~l~~~~~~l~~~  120 (379)
                      ++                 +.+|.+|+..|++.+|+..|++++...|+++   .+...+..+...+++.
T Consensus       151 ~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~  219 (235)
T TIGR03302       151 APDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLK  219 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCH
Confidence            32                 4678999999999999999999999988764   5666777777766664

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.94  E-value=2.9e-09  Score=102.58  Aligned_cols=118  Identities=19%  Similarity=0.199  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +.++.++|+..|.+|+|+.|...|.+||.-+....+++++.|..+..+|++++|+.+|-+...+--++.++++.++.+|.
T Consensus       490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye  569 (840)
T KOG2003|consen  490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE  569 (840)
T ss_pred             HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999988888889999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      .+.+..+|+++|.++..+-|+++.++.-++.+..+-+.
T Consensus       570 ~led~aqaie~~~q~~slip~dp~ilskl~dlydqegd  607 (840)
T KOG2003|consen  570 LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGD  607 (840)
T ss_pred             HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccc
Confidence            99999999999999999999999988888777655443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.94  E-value=2.2e-08  Score=107.33  Aligned_cols=112  Identities=11%  Similarity=0.100  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..+...|..+...|++++|+.+|+++|..+|.++.++..+|.++...|++++|+..+.+++..+|.+.. ++.+|.++..
T Consensus        50 ~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~  128 (765)
T PRK10049         50 RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR  128 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEE  115 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  115 (379)
                      .|++++|+..|+++++++|++..+...+..+..
T Consensus       129 ~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~  161 (765)
T PRK10049        129 AGRHWDELRAMTQALPRAPQTQQYPTEYVQALR  161 (765)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            999999999999999999999988777766544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.91  E-value=4e-08  Score=90.13  Aligned_cols=111  Identities=15%  Similarity=0.127  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRK   76 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~---~~~a~~~l   76 (379)
                      +.+++.|..++..|+|..|...|..-|...|++   +.++|.+|.|++.+|+|.+|...|..+++-.|.   -++++|.+
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            558999999999999999999999999999987   689999999999999999999999999999875   46889999


Q ss_pred             HHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973           77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (379)
Q Consensus        77 a~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (379)
                      |.|+.++|+.++|...|+++.+..|+..........+
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~  258 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL  258 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            9999999999999999999999999998776555444

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.91  E-value=3.1e-08  Score=96.76  Aligned_cols=117  Identities=15%  Similarity=0.182  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      ..+..+..++..|++++|+..++..+...|+|+.++..++.+++..++..+|++.+.+++.++|..+...+.+|.+|+..
T Consensus       308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~  387 (484)
T COG4783         308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKG  387 (484)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      |++.+|+..+...+.-+|+++..+..+++....++..
T Consensus       388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~  424 (484)
T COG4783         388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR  424 (484)
T ss_pred             CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence            9999999999999999999999999999999988875

>PLN02789 farnesyltranstransferase

Probab=98.90  E-value=3.2e-08  Score=95.02  Aligned_cols=110  Identities=15%  Similarity=0.052  Sum_probs=101.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCH--H
Q 016973           11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY--E   87 (379)
Q Consensus        11 ~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg-~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y--~   87 (379)
                      ++...+.+++|+.+++++|.++|.+..+|..|+.++..+| .+++++..+.+++..+|.+..+|+.++.++..+|+.  +
T Consensus        46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~  125 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN  125 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence            4566889999999999999999999999999999999999 689999999999999999999999999999999974  7


Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           88 TAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        88 ~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +++.++.++++++|.+..++..++.+...++..
T Consensus       126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~  158 (320)
T PLN02789        126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGW  158 (320)
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhH
Confidence            889999999999999999999888888877664

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.90  E-value=2.7e-08  Score=106.66  Aligned_cols=116  Identities=22%  Similarity=0.182  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..+...|..++..|++++|+..|.+++..+|.+..+++.+|.+++..|++++|+..+.+++..+|.+..+++.+|.+++.
T Consensus       126 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (899)
T TIGR02917       126 ELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLS  205 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA  118 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~  118 (379)
                      +|++++|+..|++++.++|++......+..+....+
T Consensus       206 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g  241 (899)
T TIGR02917       206 LGNIELALAAYRKAIALRPNNPAVLLALATILIEAG  241 (899)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Confidence            999999999999999999998887766666554433

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.87  E-value=1.1e-07  Score=85.62  Aligned_cols=119  Identities=27%  Similarity=0.250  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR   75 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~---~~a~~~   75 (379)
                      ++.++..|..++..|+|.+|+..|++++...|.+   ..+.+.+|.++++.|+|.+|+..+++.+...|++   ..++|.
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~   84 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM   84 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence            5689999999999999999999999999998876   6789999999999999999999999999999875   569999


Q ss_pred             HHHHHHhccC-----------HHHHHHHHHHHHhcCCCChH---HHHHHHHHHHHHHhh
Q 016973           76 KATACMKLEE-----------YETAKVALEKGASLAPGDSR---FTNLIKECEERIAEE  120 (379)
Q Consensus        76 la~~~~~lg~-----------y~~A~~~~~~a~~l~p~~~~---~~~~l~~~~~~l~~~  120 (379)
                      +|.+++.+.+           ..+|+..|+..+...|+..-   +...+..|...|...
T Consensus        85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~  143 (203)
T PF13525_consen   85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH  143 (203)
T ss_dssp             HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH
Confidence            9999877643           45899999999999999875   445555666555543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.87  E-value=1.9e-08  Score=85.54  Aligned_cols=92  Identities=11%  Similarity=0.103  Sum_probs=86.2

Q ss_pred             HHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHH
Q 016973           29 IEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT  107 (379)
Q Consensus        29 l~~~-p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~  107 (379)
                      ..+. ++..+.++.+|..++..|++++|...|..+..++|.+...|+.+|.|+..+|+|.+|+.+|.++..++|+++...
T Consensus        27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~  106 (157)
T PRK15363         27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP  106 (157)
T ss_pred             HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence            3445 667788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 016973          108 NLIKECEERIAEE  120 (379)
Q Consensus       108 ~~l~~~~~~l~~~  120 (379)
                      ...+.|...+++.
T Consensus       107 ~~ag~c~L~lG~~  119 (157)
T PRK15363        107 WAAAECYLACDNV  119 (157)
T ss_pred             HHHHHHHHHcCCH
Confidence            9999999888776

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.86  E-value=4.1e-08  Score=109.85  Aligned_cols=110  Identities=16%  Similarity=0.221  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE--------------LFADRAQASIKLQNFTEAVADANRAIELEPSM   69 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~--------------~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~   69 (379)
                      .+...|.+++..|++++|+.+|.+++..+|.+..              .+..+|.++...|++++|+..|.+++.++|.+
T Consensus       305 a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~  384 (1157)
T PRK11447        305 ALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD  384 (1157)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            4455566666666666666666666666555421              12334555566666666666666666666666


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973           70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (379)
Q Consensus        70 ~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (379)
                      ..+++.+|.++..+|++++|+.+|+++++++|++..+...+..+
T Consensus       385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l  428 (1157)
T PRK11447        385 SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANL  428 (1157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            77778888888888888888888888888888887665555444

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.84  E-value=5.2e-08  Score=109.05  Aligned_cols=110  Identities=15%  Similarity=0.201  Sum_probs=73.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH--------
Q 016973            7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT--------   78 (379)
Q Consensus         7 ~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~--------   78 (379)
                      ..|..++..|++++|+.+|++++..+|.+..+++.+|.+|..+|++++|+..|++++.++|.+..++..++.        
T Consensus       356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~  435 (1157)
T PRK11447        356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE  435 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence            446667777777777777777777777777777777777777777777777777777777766555443333        


Q ss_pred             ----------------------------------HHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973           79 ----------------------------------ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (379)
Q Consensus        79 ----------------------------------~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (379)
                                                        ++...|++++|+..|+++++++|++..+...++.+...
T Consensus       436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~  507 (1157)
T PRK11447        436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ  507 (1157)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence                                              33345677777777777777777766655555555443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.83  E-value=2.6e-08  Score=73.91  Aligned_cols=67  Identities=28%  Similarity=0.482  Sum_probs=37.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 016973           10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK   76 (379)
Q Consensus        10 ~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~l   76 (379)
                      ..++..++|+.|+.++++++..+|.++.+++.+|.|++++|++.+|+.++++++.+.|+...+...+
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~   69 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR   69 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            3455555555555555555555555555555555555555555555555555555555555444433

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.83  E-value=8.5e-08  Score=94.24  Aligned_cols=99  Identities=15%  Similarity=0.180  Sum_probs=64.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcc
Q 016973            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-SKAYWRKATACMKLE   84 (379)
Q Consensus         6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~-~~a~~~la~~~~~lg   84 (379)
                      ...|..++..|++++|+..|.+++..+|.+..+++.+|.+|.+.|++++|+..+.+++..+|.+ ..++..++.+|..+|
T Consensus       184 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g  263 (389)
T PRK11788        184 CELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALG  263 (389)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcC
Confidence            3455566666666666666666666666666666666666666666666666666666666554 345566666666666


Q ss_pred             CHHHHHHHHHHHHhcCCCCh
Q 016973           85 EYETAKVALEKGASLAPGDS  104 (379)
Q Consensus        85 ~y~~A~~~~~~a~~l~p~~~  104 (379)
                      ++++|+..+++++.++|+..
T Consensus       264 ~~~~A~~~l~~~~~~~p~~~  283 (389)
T PRK11788        264 DEAEGLEFLRRALEEYPGAD  283 (389)
T ss_pred             CHHHHHHHHHHHHHhCCCch
Confidence            66666666666666666554

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.83  E-value=1.6e-08  Score=75.00  Aligned_cols=71  Identities=27%  Similarity=0.418  Sum_probs=65.9

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973           43 AQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (379)
Q Consensus        43 a~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (379)
                      ..+|++.++|++|+.++++++.++|.++.+++.+|.+++.+|+|.+|+..|++++++.|++.......+.+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l   72 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML   72 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence            56789999999999999999999999999999999999999999999999999999999999877666543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.83  E-value=6.1e-08  Score=103.91  Aligned_cols=113  Identities=16%  Similarity=0.187  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg   84 (379)
                      +...|..+...|++++|+..|++++..+|+++.++.++|.++..+|+ .+|+..+++++.+.|+++..+..+|.+++.+|
T Consensus       773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  851 (899)
T TIGR02917       773 RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKG  851 (899)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence            44555666666666666666666666666666666666666666666 55666666666666666666666666666666


Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 016973           85 EYETAKVALEKGASLAPGDSRFTNLIKECEERIA  118 (379)
Q Consensus        85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~  118 (379)
                      ++++|+..|+++++++|.++.+...+..+....+
T Consensus       852 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g  885 (899)
T TIGR02917       852 EADRALPLLRKAVNIAPEAAAIRYHLALALLATG  885 (899)
T ss_pred             CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Confidence            6666666666666666666666555555544433

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.82  E-value=1.2e-08  Score=74.72  Aligned_cols=65  Identities=20%  Similarity=0.216  Sum_probs=38.8

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 016973           13 FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA   77 (379)
Q Consensus        13 ~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la   77 (379)
                      +..|+|++|+..|++++..+|++..+++.+|.||++.|++++|...+.+++..+|+++.++..++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            45566666666666666666666666666666666666666666666666666665555554444

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.82  E-value=2e-07  Score=86.13  Aligned_cols=119  Identities=18%  Similarity=0.137  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAEL---FADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR   75 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~---~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~---~~a~~~   75 (379)
                      ++.++..|..++..|+|++|+..|.+++...|....+   .+.+|.+|+++++|++|+..+++.+.++|++   +.++|.
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~  111 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM  111 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence            4568899999999999999999999999999998655   4899999999999999999999999999864   678999


Q ss_pred             HHHHHHhccC------------------HHHHHHHHHHHHhcCCCChH---HHHHHHHHHHHHHhh
Q 016973           76 KATACMKLEE------------------YETAKVALEKGASLAPGDSR---FTNLIKECEERIAEE  120 (379)
Q Consensus        76 la~~~~~lg~------------------y~~A~~~~~~a~~l~p~~~~---~~~~l~~~~~~l~~~  120 (379)
                      +|.+++.+++                  ..+|+..|++.++..|+..-   +...+..|..+|...
T Consensus       112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~  177 (243)
T PRK10866        112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY  177 (243)
T ss_pred             HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence            9999766651                  35788999999999998764   455556666665554

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.81  E-value=9.7e-08  Score=102.48  Aligned_cols=107  Identities=17%  Similarity=0.066  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      .+...|..+...|++++|+.+|++++...|.+..+++.+|.++..+|++++|+..+++++.++|++..+++.+|.++..+
T Consensus       361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~  440 (765)
T PRK10049        361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDL  440 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChHHHHHH
Q 016973           84 EEYETAKVALEKGASLAPGDSRFTNLI  110 (379)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l  110 (379)
                      |+|++|...++++++..|+++.+...-
T Consensus       441 ~~~~~A~~~~~~ll~~~Pd~~~~~~~~  467 (765)
T PRK10049        441 QEWRQMDVLTDDVVAREPQDPGVQRLA  467 (765)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            999999999999999999999765443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.81  E-value=8.2e-08  Score=94.33  Aligned_cols=116  Identities=14%  Similarity=0.183  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-----SKAYWRKAT   78 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~-----~~a~~~la~   78 (379)
                      .+...|..++..|+++.|+..|.+++..+|.+..++..++.++.+.|++++|+..+.+++..+|..     ...++.+|.
T Consensus       109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~  188 (389)
T PRK11788        109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ  188 (389)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            355667788888888888888888888777777777888888888888888888888887777654     234566777


Q ss_pred             HHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      ++...|++++|+..|+++++++|++......+..+....++
T Consensus       189 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  229 (389)
T PRK11788        189 QALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGD  229 (389)
T ss_pred             HHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC
Confidence            77888888888888888888877776666666665555444

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.79  E-value=7.1e-08  Score=81.93  Aligned_cols=92  Identities=23%  Similarity=0.177  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKA   77 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~---~~a~~~la   77 (379)
                      ..+......+..+++..+...+++.+..+|+.   ..+.+.+|.+++..|+|++|+..|..++...++.   ..+.+++|
T Consensus        13 ~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   13 ALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA   92 (145)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            34444444445555555555555555555554   3344445555555555555555555555544322   23455555


Q ss_pred             HHHHhccCHHHHHHHHHH
Q 016973           78 TACMKLEEYETAKVALEK   95 (379)
Q Consensus        78 ~~~~~lg~y~~A~~~~~~   95 (379)
                      .+++.+|+|++|+..++.
T Consensus        93 ~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHHHHcCCHHHHHHHHHh
Confidence            555555555555555533

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=4.4e-08  Score=96.91  Aligned_cols=112  Identities=19%  Similarity=0.217  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISP----N---SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA   77 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p----~---~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la   77 (379)
                      +...|..+|..+.|.+|+.+|..++...+    .   -...+.++|+++.+++.|++||..|++++.+.|.++.+|-.+|
T Consensus       417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig  496 (611)
T KOG1173|consen  417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIG  496 (611)
T ss_pred             hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHH
Confidence            45678889999999999999999984421    1   2456899999999999999999999999999999999999999


Q ss_pred             HHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973           78 TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (379)
Q Consensus        78 ~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (379)
                      .+|..+|+++.|+.+|.+++.++|++......+..+-+.
T Consensus       497 ~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  497 YIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            999999999999999999999999998877777765443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.79  E-value=4.7e-08  Score=99.69  Aligned_cols=103  Identities=15%  Similarity=0.150  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVA--DANRAIELEPSMSKAYWRKATAC   80 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~--~~~~Al~l~p~~~~a~~~la~~~   80 (379)
                      ..++..|..+...|.+.+|.++|..|+.++|+++.....+|.|+...|+-.-|..  .+..|++++|.++++||.+|.++
T Consensus       685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~  764 (799)
T KOG4162|consen  685 SVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVF  764 (799)
T ss_pred             HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            4567888999999999999999999999999999999999999999987666666  88899999999999999999999


Q ss_pred             HhccCHHHHHHHHHHHHhcCCCChH
Q 016973           81 MKLEEYETAKVALEKGASLAPGDSR  105 (379)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~  105 (379)
                      ..+|+.++|..+|+.|+++.+.+|-
T Consensus       765 k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  765 KKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHccchHHHHHHHHHHHhhccCCCc
Confidence            9999999999999999998887763

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.77  E-value=1.9e-07  Score=87.58  Aligned_cols=116  Identities=17%  Similarity=0.182  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      .+..+...++..|++..|+...++.|++.|=++.++..||.||...|....||.|+..+-++..++.+.+|.++..+|..
T Consensus       157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v  236 (504)
T KOG0624|consen  157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV  236 (504)
T ss_pred             HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence            35567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      |+.+.++...+.|++++|++........++.+..+.
T Consensus       237 gd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~  272 (504)
T KOG0624|consen  237 GDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKS  272 (504)
T ss_pred             hhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHH
Confidence            999999999999999999998766555555444433

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.75  E-value=3.1e-08  Score=72.38  Aligned_cols=68  Identities=21%  Similarity=0.344  Sum_probs=61.9

Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973           46 SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (379)
Q Consensus        46 ~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (379)
                      +++.|+|++|+..|.+++..+|++..+++.+|.||+.+|++++|...+.+++..+|+++.+...++++
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            46789999999999999999999999999999999999999999999999999999988877766653

...

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.75  E-value=2.9e-07  Score=75.49  Aligned_cols=96  Identities=21%  Similarity=0.048  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRK   76 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~---~~~a~~~l   76 (379)
                      +.+++.|..+-..|+.++|+.+|.+++......   ..+++.+|.+|..+|++++|+..++.++...|+   +......+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            568999999999999999999999999975444   568999999999999999999999999999888   78888889


Q ss_pred             HHHHHhccCHHHHHHHHHHHHh
Q 016973           77 ATACMKLEEYETAKVALEKGAS   98 (379)
Q Consensus        77 a~~~~~lg~y~~A~~~~~~a~~   98 (379)
                      +.+++.+|++++|+..+-.++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999877664

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.74  E-value=1.3e-07  Score=81.55  Aligned_cols=98  Identities=19%  Similarity=0.312  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccC--
Q 016973           18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQ----------NFTEAVADANRAIELEPSMSKAYWRKATACMKLEE--   85 (379)
Q Consensus        18 y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg----------~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~--   85 (379)
                      |+.|.+.|......+|.+++.+++-|.+++.+.          .+++|+.-|+.|+.++|+...+++.+|.+|..++.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            678999999999999999999999999998873          35778999999999999999999999999998775  


Q ss_pred             ---------HHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 016973           86 ---------YETAKVALEKGASLAPGDSRFTNLIKECEE  115 (379)
Q Consensus        86 ---------y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  115 (379)
                               |++|..+|++|...+|++..+...+..+.+
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k  125 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK  125 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence                     789999999999999999998888877654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.74  E-value=8.9e-08  Score=93.57  Aligned_cols=83  Identities=22%  Similarity=0.229  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +..++.+|.+++..|+|++|+..|+++|.++|.++.+|+++|.+|+.+|+|++|+.+|.+++.++|.+..++..++.|..
T Consensus        36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  115 (356)
T PLN03088         36 AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDE  115 (356)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999988877


Q ss_pred             hcc
Q 016973           82 KLE   84 (379)
Q Consensus        82 ~lg   84 (379)
                      .+.
T Consensus       116 kl~  118 (356)
T PLN03088        116 KIA  118 (356)
T ss_pred             HHH
Confidence            763

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.70  E-value=7.5e-08  Score=95.57  Aligned_cols=74  Identities=18%  Similarity=0.144  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHH
Q 016973           37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI  110 (379)
Q Consensus        37 ~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l  110 (379)
                      +++..+|.+|+..|+|++|+.||+.||...|++...|.|||-.+..-.+.++|+.+|.+|++|.|+...++..+
T Consensus       431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNl  504 (579)
T KOG1125|consen  431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNL  504 (579)
T ss_pred             hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhh
Confidence            33444444444456666666666666666666666666666666666666666666666666666654433333

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.70  E-value=5e-07  Score=81.70  Aligned_cols=115  Identities=19%  Similarity=0.194  Sum_probs=72.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------------------HHHHHHHHHHHHHccC
Q 016973            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS----------------------------------AELFADRAQASIKLQN   51 (379)
Q Consensus         6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~----------------------------------~~~~~~ra~~~~~lg~   51 (379)
                      .-.|..+-..|.|++|+++|+..|+.+|.+                                  .++|..+|.+|+.+|+
T Consensus        90 ~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~  169 (289)
T KOG3060|consen   90 KLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGD  169 (289)
T ss_pred             HHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhH
Confidence            345667777778888888888777777766                                  5556666666666666


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc---CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           52 FTEAVADANRAIELEPSMSKAYWRKATACMKLE---EYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        52 ~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg---~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      |..|.=|++..+-+.|.++..+.|+|.++|-+|   ++..|..+|.++++++|.+...+..+-.|-..+.+.
T Consensus       170 f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~  241 (289)
T KOG3060|consen  170 FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQI  241 (289)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHH
Confidence            666666666666666666666666666665544   344566666666666665555555555555555543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.68  E-value=8.9e-08  Score=93.81  Aligned_cols=64  Identities=19%  Similarity=0.183  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHh
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAEL---FADRAQASIKLQNFTEAVADANRAIEL   65 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~---~~~ra~~~~~lg~~~eAl~~~~~Al~l   65 (379)
                      +..++++|..++..|+|++|+.+|+++|+++|++..+   |+++|.||.++|++++|+.++.+|+++
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4566777777777777777777777777777777643   777777777777777777777777776

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.66  E-value=1.4e-08  Score=95.23  Aligned_cols=111  Identities=32%  Similarity=0.420  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      |.+...++..++..|.++.|++.|+.+|.++|.+..+|..|+.+++++++...|+++|..|+.++|+....|-.+|.+..
T Consensus       114 a~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r  193 (377)
T KOG1308|consen  114 ANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER  193 (377)
T ss_pred             HHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH
Confidence            56677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (379)
                      .+|++.+|..+|+.+.+++-+. ..-.|+..+
T Consensus       194 llg~~e~aa~dl~~a~kld~dE-~~~a~lKeV  224 (377)
T KOG1308|consen  194 LLGNWEEAAHDLALACKLDYDE-ANSATLKEV  224 (377)
T ss_pred             HhhchHHHHHHHHHHHhccccH-HHHHHHHHh
Confidence            9999999999999999997643 233444443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.66  E-value=5e-07  Score=92.23  Aligned_cols=102  Identities=22%  Similarity=0.175  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHH---------------------------------
Q 016973            3 TDLEKKAKEAFIDDY---FELAYDLYSQAIEISPNSAELFADRAQAS---------------------------------   46 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~---y~~Al~~y~~al~~~p~~~~~~~~ra~~~---------------------------------   46 (379)
                      -.++.+|..++..++   +..|+.+|++|++++|+++.++..++.||                                 
T Consensus       340 y~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~  419 (517)
T PRK10153        340 LTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVL  419 (517)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCC
Confidence            356777877776655   77888888899888888865555544443                                 


Q ss_pred             -----------HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChH
Q 016973           47 -----------IKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR  105 (379)
Q Consensus        47 -----------~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~  105 (379)
                                 ...|++++|...+++|+.++| +..+|+.+|.++...|++++|++.|++|+.++|.++.
T Consensus       420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence                       233666666777777777776 3566777777777777777777777777777776664

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.65  E-value=2.4e-07  Score=80.63  Aligned_cols=111  Identities=14%  Similarity=0.096  Sum_probs=95.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHh
Q 016973            8 KAKEAFIDDYFELAYDLYSQAIEISPNS--AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMK   82 (379)
Q Consensus         8 ~g~~~~~~g~y~~Al~~y~~al~~~p~~--~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~---~~~a~~~la~~~~~   82 (379)
                      +.+.+|-...|..+...+...+..++..  ..+++++|.++..+|++++|+..|.+|+.+.++   .+.+++++|.+|..
T Consensus         5 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~   84 (168)
T CHL00033          5 QRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS   84 (168)
T ss_pred             cccccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence            4567788888999999998887776665  677899999999999999999999999999765   34689999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA  118 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~  118 (379)
                      +|++++|+.+|++++.++|........+..+...++
T Consensus        85 ~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~  120 (168)
T CHL00033         85 NGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG  120 (168)
T ss_pred             cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence            999999999999999999998887777777766444

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.64  E-value=1.6e-07  Score=88.48  Aligned_cols=115  Identities=20%  Similarity=0.245  Sum_probs=93.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            6 EKKAKEAFIDDYFELAYDLYSQAIEIS--PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         6 ~~~g~~~~~~g~y~~Al~~y~~al~~~--p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      ......++..++++++...+.++....  +.++.+|+.+|.++.+.|+.++|+.++.+|+.++|++..+...++.++..+
T Consensus       114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~  193 (280)
T PF13429_consen  114 LSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDM  193 (280)
T ss_dssp             ----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Confidence            345567889999999999999987665  677899999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      |+++++...+.......|.++.++..++.+...+++.
T Consensus       194 ~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~  230 (280)
T PF13429_consen  194 GDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRY  230 (280)
T ss_dssp             CHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-H
T ss_pred             CChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccc
Confidence            9999999999998888898888888888888777765

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.64  E-value=3.5e-07  Score=89.66  Aligned_cols=69  Identities=23%  Similarity=0.215  Sum_probs=66.4

Q ss_pred             hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973           31 ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA---YWRKATACMKLEEYETAKVALEKGASL   99 (379)
Q Consensus        31 ~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a---~~~la~~~~~lg~y~~A~~~~~~a~~l   99 (379)
                      .+|+++.+++++|.+|+++|+|++|+..|++|++++|++..+   ||++|.+|..+|++++|+.+|++|+++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            479999999999999999999999999999999999999865   999999999999999999999999997

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.63  E-value=4.2e-07  Score=82.58  Aligned_cols=111  Identities=22%  Similarity=0.269  Sum_probs=101.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccC
Q 016973            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE   85 (379)
Q Consensus         6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~   85 (379)
                      ...+..++..|+-+.++....+++..+|.+..++...|..++..|+|.+|+..+.++..+.|+++++|..+|.+|-++|+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr  149 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR  149 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence            45677888889999999999999999999999998899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973           86 YETAKVALEKGASLAPGDSRFTNLIKECEER  116 (379)
Q Consensus        86 y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (379)
                      ++.|...|.+++++.|+++.....+......
T Consensus       150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L  180 (257)
T COG5010         150 FDEARRAYRQALELAPNEPSIANNLGMSLLL  180 (257)
T ss_pred             hhHHHHHHHHHHHhccCCchhhhhHHHHHHH
Confidence            9999999999999999999877776665443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=1.3e-07  Score=90.69  Aligned_cols=119  Identities=18%  Similarity=0.247  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------------AELFADRAQASIKLQNFTEAVADANRAIELEPS-   68 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~-   68 (379)
                      +++++.+|.+++-..+.+.|+..|+++|.++|.+            ...+-.+|.-.++.|+|..|.++|..||.++|. 
T Consensus       203 ~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n  282 (486)
T KOG0550|consen  203 AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN  282 (486)
T ss_pred             hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc
Confidence            5678889999999999999999999999999987            345677888899999999999999999999996 


Q ss_pred             ---CHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           69 ---MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        69 ---~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                         +...|+++|.++.++|+..+|+..+..++.+++.........++|...|...
T Consensus       283 ~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~  337 (486)
T KOG0550|consen  283 KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKW  337 (486)
T ss_pred             cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence               5778999999999999999999999999999999998888889998888876

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.62  E-value=1.6e-07  Score=83.02  Aligned_cols=116  Identities=22%  Similarity=0.149  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      |.-++++|+.|-..|-+.-|.-.|+++|.+.|.-++++..+|.-+...|+|+.|.+.|+-.++++|.+--+++++|++++
T Consensus        65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y  144 (297)
T COG4785          65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  144 (297)
T ss_pred             HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence            44578888888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l  117 (379)
                      .-|+|.-|...|.+..+-+|+|+--..|+-..+.++
T Consensus       145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~  180 (297)
T COG4785         145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKL  180 (297)
T ss_pred             ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhC
Confidence            999999999999999999999997666765554443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.62  E-value=5e-07  Score=96.68  Aligned_cols=111  Identities=10%  Similarity=-0.046  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ...+.++...++.|+|+.|+..|.++++.+|.++.+...++.++..+|++++|+..+++++.-.+.....+..+|.+|..
T Consensus        35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~  114 (822)
T PRK14574         35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN  114 (822)
T ss_pred             hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999853333566666666666666666666662223333333333556666


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (379)
                      +|+|++|+..|+++++++|+++.+...+..+
T Consensus       115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~  145 (822)
T PRK14574        115 EKRWDQALALWQSSLKKDPTNPDLISGMIMT  145 (822)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            6666666666666666666666655544443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.61  E-value=7.9e-07  Score=87.05  Aligned_cols=112  Identities=21%  Similarity=0.157  Sum_probs=100.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccC
Q 016973            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE   85 (379)
Q Consensus         6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~   85 (379)
                      -..+..++..+++.+|++.+++++.++|+...+.+++|.+|++.|++.+|+..+.+.+..+|.++..|..+|.+|..+|+
T Consensus       344 ~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~  423 (484)
T COG4783         344 ELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN  423 (484)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc
Confidence            34688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973           86 YETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (379)
Q Consensus        86 y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l  117 (379)
                      -.+|..++.....+..+-..+...+..+..+.
T Consensus       424 ~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         424 RAEALLARAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            99998888888888877666666555554443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=3.9e-07  Score=87.55  Aligned_cols=96  Identities=23%  Similarity=0.210  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      .+.+.+.++.+.++|..|+..++++|.++|+|.-++|+||.|+..+|+|+.|+.+|.+|+++.|.+..+...+..|..+.
T Consensus       259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~  338 (397)
T KOG0543|consen  259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI  338 (397)
T ss_pred             HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999998888777


Q ss_pred             cCHHHH-HHHHHHHHhc
Q 016973           84 EEYETA-KVALEKGASL   99 (379)
Q Consensus        84 g~y~~A-~~~~~~a~~l   99 (379)
                      .+|.+. ...|...+..
T Consensus       339 ~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  339 REYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            666554 4555555443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.60  E-value=4.1e-07  Score=91.44  Aligned_cols=118  Identities=10%  Similarity=0.074  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..+|.++..+|..++|...+...+.+|...|.+.+-+.-+|..+..+|+-++|......+++.++.+..+|.-+|.++..
T Consensus         8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~   87 (700)
T KOG1156|consen    8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS   87 (700)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      .++|++|+.||+.|+.++|+|.+++.-+..++..++..
T Consensus        88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~  125 (700)
T KOG1156|consen   88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY  125 (700)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999998888876

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.56  E-value=9e-07  Score=66.43  Aligned_cols=83  Identities=25%  Similarity=0.354  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973           38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (379)
Q Consensus        38 ~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l  117 (379)
                      +++.+|.+++..|++++|+..+.+++.+.|.+..+++.+|.++...|++++|+..|++++.+.|.+......++.+...+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999887777777766665


Q ss_pred             Hhh
Q 016973          118 AEE  120 (379)
Q Consensus       118 ~~~  120 (379)
                      +..
T Consensus        82 ~~~   84 (100)
T cd00189          82 GKY   84 (100)
T ss_pred             HhH
Confidence            553

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.55  E-value=1e-06  Score=85.53  Aligned_cols=97  Identities=16%  Similarity=0.137  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM----SKAYWRKATAC   80 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~----~~a~~~la~~~   80 (379)
                      +...|..+...|++++|+..|.+++.++|++..++..+|.+++..|++++|+..+.+++...|..    ...++.+|.++
T Consensus       117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~  196 (355)
T cd05804         117 LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY  196 (355)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence            44678899999999999999999999999999999999999999999999999999999987643    24567899999


Q ss_pred             HhccCHHHHHHHHHHHHhcCC
Q 016973           81 MKLEEYETAKVALEKGASLAP  101 (379)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p  101 (379)
                      ..+|++++|+..|++++...|
T Consensus       197 ~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         197 LERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHCCCHHHHHHHHHHHhcccc
Confidence            999999999999999877766

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.51  E-value=1.4e-06  Score=85.53  Aligned_cols=89  Identities=24%  Similarity=0.334  Sum_probs=46.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHH
Q 016973            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE   87 (379)
Q Consensus         8 ~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~   87 (379)
                      .+..++..++-.+|++++.++|..+|.+..++...|..+++.++++.|+..+.+|+.+.|.....|+.|+.+|..+|+|+
T Consensus       206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e  285 (395)
T PF09295_consen  206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFE  285 (395)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHH
Confidence            34444445555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHH
Q 016973           88 TAKVALEKG   96 (379)
Q Consensus        88 ~A~~~~~~a   96 (379)
                      .|+..+..+
T Consensus       286 ~ALlaLNs~  294 (395)
T PF09295_consen  286 NALLALNSC  294 (395)
T ss_pred             HHHHHHhcC
Confidence            555444433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.50  E-value=1.2e-06  Score=91.72  Aligned_cols=114  Identities=14%  Similarity=0.090  Sum_probs=85.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 016973            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA   79 (379)
Q Consensus         1 ~A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~-~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~   79 (379)
                      +|+.++..|..+...|+|++|-.+|.+++..++++ ...++.+|..|++.|++.+|+.+|++.+...|++.+.+..+|.+
T Consensus       306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~L  385 (1018)
T KOG2002|consen  306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCL  385 (1018)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence            35667777888888888888888888888777777 56677778888888888888888888888888877877777777


Q ss_pred             HHhcc----CHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 016973           80 CMKLE----EYETAKVALEKGASLAPGDSRFTNLIKECE  114 (379)
Q Consensus        80 ~~~lg----~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (379)
                      |...+    ..+.|...+.++++..|.+..++..++.+.
T Consensus       386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~  424 (1018)
T KOG2002|consen  386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL  424 (1018)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            77765    566777777777777777776655555543

>PRK11906 transcriptional regulator; Provisional

Probab=98.49  E-value=2.6e-06  Score=83.74  Aligned_cols=113  Identities=10%  Similarity=-0.007  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHcCCH---HHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCC
Q 016973            4 DLEKKAKEAFIDDYF---ELAYDLYSQAI---EISPNSAELFADRAQASIKL---------QNFTEAVADANRAIELEPS   68 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y---~~Al~~y~~al---~~~p~~~~~~~~ra~~~~~l---------g~~~eAl~~~~~Al~l~p~   68 (379)
                      .++.+|...+..+..   ..|+.+|.+|+   .++|....+|..+|.|++.+         ....+|++.+.+|++++|.
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~  336 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV  336 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence            456677777665554   58888999999   89999999999999999876         2356889999999999999


Q ss_pred             CHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973           69 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (379)
Q Consensus        69 ~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (379)
                      ++.+++.+|.++...++++.|...|++|+.++|+........+.+...
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~  384 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH  384 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999877777765443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.49  E-value=5.3e-06  Score=70.36  Aligned_cols=93  Identities=18%  Similarity=0.167  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~   80 (379)
                      ..+..|..++..|+|++|+..|+.++...++.   ..+.+++|.+++..|+|++|+..+.. +.-.+-.+.++..+|.+|
T Consensus        50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~  128 (145)
T PF09976_consen   50 AALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIY  128 (145)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHH
Confidence            56778999999999999999999999987655   46788999999999999999999966 333445678899999999


Q ss_pred             HhccCHHHHHHHHHHHH
Q 016973           81 MKLEEYETAKVALEKGA   97 (379)
Q Consensus        81 ~~lg~y~~A~~~~~~a~   97 (379)
                      +..|++++|+..|++++
T Consensus       129 ~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  129 LAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHCCCHHHHHHHHHHhC
Confidence            99999999999999874

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.48  E-value=4.4e-06  Score=75.71  Aligned_cols=88  Identities=19%  Similarity=0.137  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ---NFTEAVADANRAIELEPSMSKAYWRKAT   78 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg---~~~eAl~~~~~Al~l~p~~~~a~~~la~   78 (379)
                      .++|...+..|+..|+|..|.=||.+++-++|.++.++.++|.+++-+|   ++.-|..+|.+|+.++|.+..++|.+-.
T Consensus       154 ~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~l  233 (289)
T KOG3060|consen  154 QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYL  233 (289)
T ss_pred             HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHH
Confidence            3688999999999999999999999999999999999999999998875   6788999999999999999999998888


Q ss_pred             HHHhccCHHHH
Q 016973           79 ACMKLEEYETA   89 (379)
Q Consensus        79 ~~~~lg~y~~A   89 (379)
                      |...+-+...+
T Consensus       234 c~~~la~~sk~  244 (289)
T KOG3060|consen  234 CGSALAQISKA  244 (289)
T ss_pred             HHHHHHHHhHH
Confidence            87766444333

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.48  E-value=6.8e-07  Score=82.74  Aligned_cols=85  Identities=21%  Similarity=0.196  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      --|.++|.+|.+.|.|+.|++.+..||.++|+...+|.++|.+|+.+|+|.+|++.|.+||.++|.+....-.|..+-..
T Consensus       116 VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~  195 (304)
T KOG0553|consen  116 VYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK  195 (304)
T ss_pred             hHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999998888777777776


Q ss_pred             ccCHH
Q 016973           83 LEEYE   87 (379)
Q Consensus        83 lg~y~   87 (379)
                      +++-.
T Consensus       196 l~e~~  200 (304)
T KOG0553|consen  196 LNEPK  200 (304)
T ss_pred             hcCCC
Confidence            66655

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.47  E-value=9.3e-07  Score=77.23  Aligned_cols=86  Identities=16%  Similarity=0.137  Sum_probs=76.2

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHH
Q 016973           34 NSAELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI  110 (379)
Q Consensus        34 ~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~---~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l  110 (379)
                      ....+++++|.++...|++++|+.+|.+++.+.++.   ..+++.+|.++..+|+|++|+.+|++++.+.|++......+
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  112 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI  112 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            457789999999999999999999999999987753   57999999999999999999999999999999998887777


Q ss_pred             HHHHHHHHh
Q 016973          111 KECEERIAE  119 (379)
Q Consensus       111 ~~~~~~l~~  119 (379)
                      +.+...++.
T Consensus       113 g~~~~~~g~  121 (172)
T PRK02603        113 AVIYHKRGE  121 (172)
T ss_pred             HHHHHHcCC
Confidence            777665544

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.46  E-value=1.9e-07  Score=70.22  Aligned_cols=64  Identities=20%  Similarity=0.340  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973           36 AELFADRAQASIKLQNFTEAVADANRAIELE-------PSMSKAYWRKATACMKLEEYETAKVALEKGASL   99 (379)
Q Consensus        36 ~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~-------p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l   99 (379)
                      ..++.++|.+|..+|+|++|+.+|++++.+.       +..+.+++++|.++..+|++++|+.+|++++++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4567888888888888888888888888662       123667888888888888888888888888765

...

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.46  E-value=4.4e-07  Score=92.35  Aligned_cols=106  Identities=20%  Similarity=0.188  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +.+-...|...+.+++|.+|..+++..++++|-....|+++|.|+.++++++.|..+|.+++.++|++..+|.+++-+|.
T Consensus       485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi  564 (777)
T KOG1128|consen  485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI  564 (777)
T ss_pred             HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence            33444556667778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHH
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFT  107 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~  107 (379)
                      ++|+-.+|...+++|++.+-.+-.++
T Consensus       565 ~~~~k~ra~~~l~EAlKcn~~~w~iW  590 (777)
T KOG1128|consen  565 RLKKKKRAFRKLKEALKCNYQHWQIW  590 (777)
T ss_pred             HHhhhHHHHHHHHHHhhcCCCCCeee
Confidence            99999999999999999986655433

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.46  E-value=2.7e-06  Score=91.17  Aligned_cols=114  Identities=14%  Similarity=0.116  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg   84 (379)
                      +...|..+...|+|+.|+++|+++++.+|+++.++..++.+|..++++++|+..+.+++..+|.+... ..++.++..++
T Consensus       105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~  183 (822)
T PRK14574        105 LASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATD  183 (822)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcc
Confidence            44457788899999999999999999999999999999999999999999999999999999985554 55566666678


Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           85 EYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      ++.+|+..|+++++++|++..+...+-.+...++.
T Consensus       184 ~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~  218 (822)
T PRK14574        184 RNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRI  218 (822)
T ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            88779999999999999999877666555444433

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.45  E-value=4.9e-06  Score=86.58  Aligned_cols=100  Identities=20%  Similarity=0.182  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      ...++..|.++-..|+.+.|+...-.|..++|.+.+.|..+|....++|++.+|+-+|.+||+++|.+.+..++++.+|.
T Consensus       173 ~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~  252 (895)
T KOG2076|consen  173 PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQ  252 (895)
T ss_pred             hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCC
Q 016973           82 KLEEYETAKVALEKGASLAP  101 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p  101 (379)
                      ++|++..|+..|.+++.++|
T Consensus       253 ~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  253 KTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HhChHHHHHHHHHHHHhhCC
Confidence            99999999999999999999

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.44  E-value=5.7e-07  Score=88.50  Aligned_cols=113  Identities=25%  Similarity=0.265  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL---QNFTEAVADANRAIELEPSMSKAYWRKAT   78 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~l---g~~~eAl~~~~~Al~l~p~~~~a~~~la~   78 (379)
                      ++.++..|+..|-.+....|+..|.+++...|....+|.+||.++++.   |+.-.|+.|+..|++++|...++||+|+.
T Consensus       374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~  453 (758)
T KOG1310|consen  374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLAR  453 (758)
T ss_pred             HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence            456788899999999999999999999999999999999999999987   67888999999999999999999999999


Q ss_pred             HHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 016973           79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (379)
Q Consensus        79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (379)
                      +++.++++.+|+.+...+....|.+.........+.
T Consensus       454 aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~  489 (758)
T KOG1310|consen  454 ALNELTRYLEALSCHWALQMSFPTDVARQNFVLCLP  489 (758)
T ss_pred             HHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhccc
Confidence            999999999999999888888886655444443333

>TIGR00540 hemY_coli hemY protein

Probab=98.44  E-value=8.1e-06  Score=81.35  Aligned_cols=118  Identities=14%  Similarity=0.106  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS-KAYWRKATACM   81 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~-~a~~~la~~~~   81 (379)
                      ......|...+..|+|+.|.+.+.++....|.....+...|.++.++|+++.|...+.++.+..|... .+...++.++.
T Consensus        85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l  164 (409)
T TIGR00540        85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL  164 (409)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Confidence            45577899999999999999999999999998888888899999999999999999999999988875 45666799999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      ..|+++.|...+++..+..|+++.+...+..+....++.
T Consensus       165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~  203 (409)
T TIGR00540       165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAW  203 (409)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH
Confidence            999999999999999999999999888888887777665

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.43  E-value=2.6e-06  Score=90.77  Aligned_cols=112  Identities=13%  Similarity=0.063  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------------
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS------------   70 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~------------   70 (379)
                      .++......+...+++++|+..+..++..+|+...+|+..|.++++.+++.+|...  .++.+.+...            
T Consensus        32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i  109 (906)
T PRK14720         32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKI  109 (906)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHH
Confidence            46777888888999999999999999999999999999999999999888776654  5555555444            


Q ss_pred             -------HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973           71 -------KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (379)
Q Consensus        71 -------~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (379)
                             .|++.+|.||-.+|++++|...|+++++++|+|+.+...++.....
T Consensus       110 ~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae  162 (906)
T PRK14720        110 LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE  162 (906)
T ss_pred             HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence                   8999999999999999999999999999999999877766654443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.42  E-value=6.4e-07  Score=83.66  Aligned_cols=95  Identities=16%  Similarity=0.151  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg   84 (379)
                      +..++.++-.++++++|+++|..++..+|.|.++....|..|+--++.+-|+.+|.+++++.-.+++.+.++|.|++..+
T Consensus       293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaq  372 (478)
T KOG1129|consen  293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ  372 (478)
T ss_pred             hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc
Confidence            45566777777777777777777777777775444444444444444555555555555554445555555555555555


Q ss_pred             CHHHHHHHHHHHHhc
Q 016973           85 EYETAKVALEKGASL   99 (379)
Q Consensus        85 ~y~~A~~~~~~a~~l   99 (379)
                      +|+-++.+|++|+..
T Consensus       373 Q~D~~L~sf~RAlst  387 (478)
T KOG1129|consen  373 QIDLVLPSFQRALST  387 (478)
T ss_pred             chhhhHHHHHHHHhh
Confidence            544444444444444

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.40  E-value=3.2e-06  Score=68.07  Aligned_cols=84  Identities=14%  Similarity=0.145  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCh---HHHHH
Q 016973           36 AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS---RFTNL  109 (379)
Q Consensus        36 ~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~---~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~---~~~~~  109 (379)
                      +..++.+|..+...|++++|+..|..++..+|++   ..+++.+|.+++..|+++.|+..|+.++..+|+++   .+...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            3568999999999999999999999999999876   67999999999999999999999999999999863   44555


Q ss_pred             HHHHHHHHHh
Q 016973          110 IKECEERIAE  119 (379)
Q Consensus       110 l~~~~~~l~~  119 (379)
                      ++.+...++.
T Consensus        82 ~~~~~~~~~~   91 (119)
T TIGR02795        82 LGMSLQELGD   91 (119)
T ss_pred             HHHHHHHhCC
Confidence            5555554444

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.37  E-value=3.8e-06  Score=87.98  Aligned_cols=115  Identities=16%  Similarity=0.161  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM-SKAYWRKAT   78 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~-~~a~~~la~   78 (379)
                      ..+...++-+|..|+|..+..++..++...-+.   .+.+|.+|.+|..+|+|++|..+|-.++..++++ .-.++.+|+
T Consensus       271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQ  350 (1018)
T KOG2002|consen  271 VALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQ  350 (1018)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhH
Confidence            467788999999999999999999999886544   3459999999999999999999999999999987 789999999


Q ss_pred             HHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973           79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (379)
Q Consensus        79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l  117 (379)
                      .|.+.|+++.|..+|++++...|++......++.+....
T Consensus       351 m~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~  389 (1018)
T KOG2002|consen  351 MYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS  389 (1018)
T ss_pred             HHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence            999999999999999999999999999888888877766

>PRK11906 transcriptional regulator; Provisional

Probab=98.36  E-value=5.8e-06  Score=81.39  Aligned_cols=91  Identities=14%  Similarity=0.145  Sum_probs=86.0

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHH
Q 016973           15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALE   94 (379)
Q Consensus        15 ~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~   94 (379)
                      ..+..+|+++-.+|++++|.++.++..+|.++...++++.|+..|++|+.++|+++.+|+..|.+++..|+.++|...++
T Consensus       317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~  396 (458)
T PRK11906        317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID  396 (458)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCChH
Q 016973           95 KGASLAPGDSR  105 (379)
Q Consensus        95 ~a~~l~p~~~~  105 (379)
                      +|++++|....
T Consensus       397 ~alrLsP~~~~  407 (458)
T PRK11906        397 KSLQLEPRRRK  407 (458)
T ss_pred             HHhccCchhhH
Confidence            99999997654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.34  E-value=1.3e-06  Score=65.65  Aligned_cols=65  Identities=18%  Similarity=0.283  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC-C---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI---SP-N---SAELFADRAQASIKLQNFTEAVADANRAIELE   66 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~---~p-~---~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~   66 (379)
                      +..+...|.+++..|+|++|+.+|++++.+   .+ .   -+.++.++|.|+..+|++++|++.+.+|+.+.
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            567899999999999999999999999987   22 2   26789999999999999999999999999763

...

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.31  E-value=2.5e-05  Score=77.59  Aligned_cols=119  Identities=14%  Similarity=0.108  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSK-AYWRKATAC   80 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~-a~~~la~~~   80 (379)
                      +...+..|..++..|+|+.|.+...++-...++....+...+.+..++|+++.|...+.+|.+.+|+... ..+..+.++
T Consensus        84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~  163 (398)
T PRK10747         84 ARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQ  163 (398)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            3456778888999999999998887766654333344444455558899999999999999998888753 344558899


Q ss_pred             HhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      ...|++++|...+++..+.+|+++.+...+..+....++-
T Consensus       164 l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw  203 (398)
T PRK10747        164 LARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAW  203 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhH
Confidence            9999999999999999999999998888888877766654

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.31  E-value=7.7e-06  Score=79.35  Aligned_cols=98  Identities=18%  Similarity=0.101  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-------------------------------------HHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFAD-------------------------------------RAQAS   46 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~-------------------------------------ra~~~   46 (379)
                      ..+.+|..++..|++++|+.++.+++..+|.+..++..                                     +|.++
T Consensus        45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~  124 (355)
T cd05804          45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL  124 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence            45667889999999999999999999998887655442                                     33344


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 016973           47 IKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP  101 (379)
Q Consensus        47 ~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p  101 (379)
                      ..+|++++|+..+++++.++|.+..++..+|.+|+.+|++++|+.+|++++.+.|
T Consensus       125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~  179 (355)
T cd05804         125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD  179 (355)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence            4445555555555555555555555555555555555555555555555555544

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=5.4e-06  Score=82.43  Aligned_cols=111  Identities=13%  Similarity=0.087  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      -.|+..|.-|+--|++.+|.++|.++..++|....+|...|+.+.-.+..++|+.+|..|-++.|.....++.+|.-|.+
T Consensus       313 ~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~  392 (611)
T KOG1173|consen  313 LSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR  392 (611)
T ss_pred             cchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence            45788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (379)
                      ++.+..|..+|.+|+.+.|+++-+...++.+
T Consensus       393 t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvv  423 (611)
T KOG1173|consen  393 TNNLKLAEKFFKQALAIAPSDPLVLHELGVV  423 (611)
T ss_pred             hccHHHHHHHHHHHHhcCCCcchhhhhhhhe
Confidence            9999999999999999999998766655544

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.27  E-value=4.2e-06  Score=78.33  Aligned_cols=114  Identities=13%  Similarity=0.006  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      +.+.-.+.+|.+-.+...|+..|.+.|+..|.+..++...|.++..++++++|++.|..++.++|.+.++.-.+|.-||.
T Consensus       257 dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY  336 (478)
T KOG1129|consen  257 DTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY  336 (478)
T ss_pred             hHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeecccc
Confidence            44555556666666666666666666666666666677777777777777777777777777777777777677777777


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (379)
                      -++.+-|+.+|++.+.+.-.++++...++.|=..
T Consensus       337 ~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y  370 (478)
T KOG1129|consen  337 DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY  370 (478)
T ss_pred             CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh
Confidence            7777777777777777777677666666665433

>TIGR00540 hemY_coli hemY protein

Probab=98.27  E-value=1.3e-05  Score=79.94  Aligned_cols=117  Identities=8%  Similarity=-0.024  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELF--ADRAQASIKLQNFTEAVADANRAIELEPSMS--KAYWRKAT   78 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~--~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~--~a~~~la~   78 (379)
                      ......|..+...|++++|+..+.+++...|++....  ..+.......++...++..++++++.+|+++  ..+..+|.
T Consensus       264 ~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~  343 (409)
T TIGR00540       264 ALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQ  343 (409)
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence            3456778999999999999999999999999987531  2233344456889999999999999999999  88889999


Q ss_pred             HHHhccCHHHHHHHHH--HHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           79 ACMKLEEYETAKVALE--KGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        79 ~~~~lg~y~~A~~~~~--~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +++++|+|++|..+|+  .+++.+|++.... .++.+...+++.
T Consensus       344 l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~  386 (409)
T TIGR00540       344 LLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDK  386 (409)
T ss_pred             HHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCH
Confidence            9999999999999999  6888889877644 777776655553

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.26  E-value=1.1e-05  Score=82.94  Aligned_cols=117  Identities=17%  Similarity=0.081  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      .+...|..+...+.-++|..++.++-.+.|..+..|+.+|.++...|++.+|.+.|..|+.++|++..+.-.+|.+|.+.
T Consensus       652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~  731 (799)
T KOG4162|consen  652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL  731 (799)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence            34567888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHH--HHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           84 EEYETAKV--ALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        84 g~y~~A~~--~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      |+-.-|..  .+..+++++|.+.+++..++.+-..++..
T Consensus       732 G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~  770 (799)
T KOG4162|consen  732 GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS  770 (799)
T ss_pred             CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccch
Confidence            99888887  99999999999999999999999888876

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.25  E-value=5.7e-06  Score=83.58  Aligned_cols=99  Identities=27%  Similarity=0.285  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIELE-------   66 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~--------~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~-------   66 (379)
                      +..+...|..|...++|.+|+.+|.+||.+        +|.-+.++.++|.+|.+.|+|.+|..++++|+.+-       
T Consensus       241 a~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~  320 (508)
T KOG1840|consen  241 ASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS  320 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC
Confidence            345566899999999999999999999998        44447889999999999999999999999999883       


Q ss_pred             -CCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 016973           67 -PSMSKAYWRKATACMKLEEYETAKVALEKGASLA  100 (379)
Q Consensus        67 -p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~  100 (379)
                       +.-+..+..++.++..+++|++|+.+|++++++.
T Consensus       321 ~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~  355 (508)
T KOG1840|consen  321 HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY  355 (508)
T ss_pred             hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence             3456788889999999999999999999999874

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=2.1e-05  Score=73.24  Aligned_cols=106  Identities=16%  Similarity=0.141  Sum_probs=93.9

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccC---HHHHHH
Q 016973           15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE---YETAKV   91 (379)
Q Consensus        15 ~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~---y~~A~~   91 (379)
                      ....+..+.-++.-|..||++.+-|..+|.+|+.+|++..|...|.+|+++.|+++..+..+|.+++....   -.++..
T Consensus       135 ~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~  214 (287)
T COG4235         135 EQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA  214 (287)
T ss_pred             cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            34467788889999999999999999999999999999999999999999999999999999999876553   468999


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           92 ALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        92 ~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      .|++++.++|++......++......++.
T Consensus       215 ll~~al~~D~~~iral~lLA~~afe~g~~  243 (287)
T COG4235         215 LLRQALALDPANIRALSLLAFAAFEQGDY  243 (287)
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHcccH
Confidence            99999999999999888888776655554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.22  E-value=7.2e-06  Score=82.84  Aligned_cols=97  Identities=21%  Similarity=0.182  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CC
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL--------EP   67 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~--------~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l--------~p   67 (379)
                      .+...|..|+..|+|+.|+..|.+||++        .+.-...+..+|..|..+++|.+|+..|.+|+.+        +|
T Consensus       201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~  280 (508)
T KOG1840|consen  201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP  280 (508)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            3455899999999999999999999999        4444555666999999999999999999999987        34


Q ss_pred             CCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 016973           68 SMSKAYWRKATACMKLEEYETAKVALEKGASLA  100 (379)
Q Consensus        68 ~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~  100 (379)
                      .-+.++.+||.+|+..|+|++|..++++|+++.
T Consensus       281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~  313 (508)
T KOG1840|consen  281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIY  313 (508)
T ss_pred             HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence            567899999999999999999999999999874

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.22  E-value=2.2e-06  Score=65.52  Aligned_cols=58  Identities=22%  Similarity=0.347  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRA   62 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~A   62 (379)
                      .++..|.++|..|+|.+|+.++++ +..++.+....+.+|.|++++|+|++|+..+.+|
T Consensus        27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   27 YLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            467789999999999999999999 8888888888888999999999999999999875

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=9.7e-06  Score=78.01  Aligned_cols=109  Identities=19%  Similarity=0.209  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +..|+..|..+|..++|..|+.+-.++|+.+|++..+|.-.|.+++.+++.++|+-.|+.|+.+.|..-..|..+-.+|.
T Consensus       300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL  379 (564)
T KOG1174|consen  300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL  379 (564)
T ss_pred             hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence            34567778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHH
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLI  110 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l  110 (379)
                      ..|++.+|......+...-|.+......+
T Consensus       380 A~~~~kEA~~~An~~~~~~~~sA~~LtL~  408 (564)
T KOG1174|consen  380 AQKRFKEANALANWTIRLFQNSARSLTLF  408 (564)
T ss_pred             hhchHHHHHHHHHHHHHHhhcchhhhhhh
Confidence            88888888888888888877777655444

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.19  E-value=7e-05  Score=67.30  Aligned_cols=111  Identities=15%  Similarity=0.091  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCC
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQ-----------NFTEAVADANRAIELEPS   68 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg-----------~~~eAl~~~~~Al~l~p~   68 (379)
                      ++++..|.+++..|+|..|+..|++.+...|++   ..+++.+|.|++.+.           ...+|+..|...+...|+
T Consensus        43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~  122 (203)
T PF13525_consen   43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN  122 (203)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC
Confidence            567899999999999999999999999999987   568999999987763           345899999999999997


Q ss_pred             CH-----------------HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973           69 MS-----------------KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (379)
Q Consensus        69 ~~-----------------~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (379)
                      +.                 .--+..|..|++.|.|..|+..|+.+++..|+.+.....+..+
T Consensus       123 S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l  184 (203)
T PF13525_consen  123 SEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARL  184 (203)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence            42                 2235578999999999999999999999999988765544443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.17  E-value=2.9e-05  Score=83.02  Aligned_cols=112  Identities=10%  Similarity=0.012  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------------
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE----------------   66 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~----------------   66 (379)
                      .+++.+|.+|-+.|++++|...|+++|+++|+|+.++.++|..|... ++++|+..+.+|+...                
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~  195 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKL  195 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999 9999999999998763                


Q ss_pred             ----CCCHHHH--------------------HHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 016973           67 ----PSMSKAY--------------------WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE  115 (379)
Q Consensus        67 ----p~~~~a~--------------------~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  115 (379)
                          |.+...+                    +-+-.+|...++|++++..|+.+++++|.|.-+...+..|..
T Consensus       196 ~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        196 VHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence                2222222                    222278888999999999999999999999998888888876

>PRK15331 chaperone protein SicA; Provisional

Probab=98.17  E-value=8.5e-06  Score=69.76  Aligned_cols=89  Identities=11%  Similarity=0.014  Sum_probs=82.3

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 016973           32 SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK  111 (379)
Q Consensus        32 ~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~  111 (379)
                      .++.-+..+..|.-++..|++++|...|.-...+++.+++.++.+|-|+..+++|++|+.+|..|..++++|+......+
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag  112 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG  112 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence            44446778999999999999999999999999999999999999999999999999999999999999999999888889


Q ss_pred             HHHHHHHhh
Q 016973          112 ECEERIAEE  120 (379)
Q Consensus       112 ~~~~~l~~~  120 (379)
                      .|...+++.
T Consensus       113 qC~l~l~~~  121 (165)
T PRK15331        113 QCQLLMRKA  121 (165)
T ss_pred             HHHHHhCCH
Confidence            998888776

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.17  E-value=5.3e-05  Score=77.24  Aligned_cols=77  Identities=19%  Similarity=0.192  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973           37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (379)
Q Consensus        37 ~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (379)
                      ++++.+|.+|..+|++++|+..+++||...|..++.|+.+|.+|.+.|++.+|..++..|..+|..|.-+..-..+.
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy  271 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKY  271 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence            56788899998999999999999999999999999999999999999999999999999999998887654444443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=1.8e-05  Score=76.13  Aligned_cols=117  Identities=18%  Similarity=0.142  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH----------------------------------HHHHc
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQ----------------------------------ASIKL   49 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~----------------------------------~~~~l   49 (379)
                      -+...|.++|..|++.+|+..|.++..++|.+....--.|.                                  .++..
T Consensus       234 Ll~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~  313 (564)
T KOG1174|consen  234 LMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDE  313 (564)
T ss_pred             HHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhh
Confidence            45678999999999999999999999999987433222222                                  23344


Q ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           50 QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        50 g~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      ++|..|+....++|+++|++..+++..|.++.++|+..+|+-+|+.|..+.|.+-...+.+-.|....+..
T Consensus       314 K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~  384 (564)
T KOG1174|consen  314 KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRF  384 (564)
T ss_pred             hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchH
Confidence            77888999999999999999999999999999999999999999999999999888777777776665554

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.16  E-value=6.3e-06  Score=86.50  Aligned_cols=118  Identities=17%  Similarity=0.120  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------------------------------------HHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA------------------------------------ELFADRAQA   45 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~------------------------------------~~~~~ra~~   45 (379)
                      |-.+...|..|..-.+...|..+|++|.++++.++                                    ..|..||..
T Consensus       492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y  571 (1238)
T KOG1127|consen  492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY  571 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence            44555566666666666677777777777766551                                    223445555


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           46 SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        46 ~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      |...+++..|+.+|+.|++.+|.+..+|..+|.+|.+.|+|..|+..|.++..++|.+.-.....+-++..++.
T Consensus       572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~Gk  645 (1238)
T KOG1127|consen  572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGK  645 (1238)
T ss_pred             ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhh
Confidence            66667777777777777777777777777777777777777777777777777777766555555544444444

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.13  E-value=2.4e-05  Score=76.10  Aligned_cols=112  Identities=15%  Similarity=0.015  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      +++++.|..+-..|++++|+.+|-+.-.+--++++.++.+|.+|..+.+...|++.+..+..+-|+++.++-.+|..|-+
T Consensus       525 ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydq  604 (840)
T KOG2003|consen  525 EALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ  604 (840)
T ss_pred             HHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc
Confidence            47889999999999999999999888888778899999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (379)
                      .|+-.+|..++-...+.-|.+.+...|++...
T Consensus       605 egdksqafq~~ydsyryfp~nie~iewl~ayy  636 (840)
T KOG2003|consen  605 EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYY  636 (840)
T ss_pred             ccchhhhhhhhhhcccccCcchHHHHHHHHHH
Confidence            99988888888888888888888888887643

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.13  E-value=5.6e-05  Score=65.73  Aligned_cols=101  Identities=22%  Similarity=0.200  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEI-SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATACM   81 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~-~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~--~~~a~~~la~~~~   81 (379)
                      -+..|+.+.+.|+|.+|...|.+++.- ...++..++.+|.+.+.++++..|...++...+.+|.  .+..++.+|..|.
T Consensus        92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la  171 (251)
T COG4700          92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA  171 (251)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence            467899999999999999999999984 6778999999999999999999999999999999984  6888999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChH
Q 016973           82 KLEEYETAKVALEKGASLAPGDSR  105 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~  105 (379)
                      .+|+|.+|...|+.++...|+-..
T Consensus       172 a~g~~a~Aesafe~a~~~ypg~~a  195 (251)
T COG4700         172 AQGKYADAESAFEVAISYYPGPQA  195 (251)
T ss_pred             hcCCchhHHHHHHHHHHhCCCHHH
Confidence            999999999999999999997543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.13  E-value=4.3e-05  Score=75.90  Aligned_cols=113  Identities=12%  Similarity=0.089  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      .....|..+...|+.++|...+.+++... .++.+...++.+  ..+++++++..++..++.+|+++..++.+|.++.+.
T Consensus       265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~~-~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~  341 (398)
T PRK10747        265 LQVAMAEHLIECDDHDTAQQIILDGLKRQ-YDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH  341 (398)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence            45667899999999999999999999954 455555555544  459999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      ++|.+|..+|+++++..|++..+ ..+..+...+++.
T Consensus       342 ~~~~~A~~~le~al~~~P~~~~~-~~La~~~~~~g~~  377 (398)
T PRK10747        342 GEWQEASLAFRAALKQRPDAYDY-AWLADALDRLHKP  377 (398)
T ss_pred             CCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHcCCH
Confidence            99999999999999999997763 3667776666554

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.11  E-value=3.4e-05  Score=78.04  Aligned_cols=115  Identities=23%  Similarity=0.231  Sum_probs=92.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------------------------HHHHHHHHHHHHccCH
Q 016973            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSA---------------------------------ELFADRAQASIKLQNF   52 (379)
Q Consensus         6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~---------------------------------~~~~~ra~~~~~lg~~   52 (379)
                      +.-+......|+...|..++.+|++.+|++.                                 .+|+.-+....-+++.
T Consensus       588 lM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~  667 (913)
T KOG0495|consen  588 LMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNV  667 (913)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhH
Confidence            3344556666666666666666666666663                                 3344445555566889


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           53 TEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        53 ~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      ++|++.++.+++..|.+.+.|+.+|+++.++++.+.|...|..+++..|+...++..+.+++++.++.
T Consensus       668 eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~  735 (913)
T KOG0495|consen  668 EEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQL  735 (913)
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcch
Confidence            99999999999999999999999999999999999999999999999999999999999998887654

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.11  E-value=1.5e-05  Score=69.95  Aligned_cols=70  Identities=27%  Similarity=0.349  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY   73 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~   73 (379)
                      .|.++|.++++.+.++.||..+.++|+++|.+.-++.+||.+|.++.+|++|+.||.+++.++|....+.
T Consensus       136 ly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear  205 (271)
T KOG4234|consen  136 LYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAR  205 (271)
T ss_pred             HHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHH
Confidence            3567899999999999999999999999999999999999999999999999999999999999776443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.11  E-value=5.6e-05  Score=70.86  Aligned_cols=101  Identities=14%  Similarity=0.134  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHh
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-SKAYWRKATACMK   82 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~-~~a~~~la~~~~~   82 (379)
                      -+.+.|..+....+.+.|+..+.+|+..+|++..+-..+|.++...|+|+.|++.++.+++.+|.+ +++.-.+..||.+
T Consensus       182 fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~  261 (389)
T COG2956         182 FYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ  261 (389)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            344555566666666666666666666666666666666666666666666666666666666643 4556666666666


Q ss_pred             ccCHHHHHHHHHHHHhcCCCCh
Q 016973           83 LEEYETAKVALEKGASLAPGDS  104 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~  104 (379)
                      +|+.++.+.++.++.+..++..
T Consensus       262 lg~~~~~~~fL~~~~~~~~g~~  283 (389)
T COG2956         262 LGKPAEGLNFLRRAMETNTGAD  283 (389)
T ss_pred             hCCHHHHHHHHHHHHHccCCcc
Confidence            6666666666666666655543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.09  E-value=5.6e-05  Score=74.42  Aligned_cols=108  Identities=19%  Similarity=0.193  Sum_probs=98.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHH
Q 016973           11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK   90 (379)
Q Consensus        11 ~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~   90 (379)
                      .+-..++|+.|+.+|++....+|+   +...+|.+++..++..+|++.+.+++...|.+...+...|..|...++|+.|+
T Consensus       178 ~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL  254 (395)
T PF09295_consen  178 YLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELAL  254 (395)
T ss_pred             HHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence            344567899999999999998875   45568889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHhhh
Q 016973           91 VALEKGASLAPGDSRFTNLIKECEERIAEET  121 (379)
Q Consensus        91 ~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~  121 (379)
                      ...+++..+.|++...+..++.|.-.+++..
T Consensus       255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e  285 (395)
T PF09295_consen  255 EIAKKAVELSPSEFETWYQLAECYIQLGDFE  285 (395)
T ss_pred             HHHHHHHHhCchhHHHHHHHHHHHHhcCCHH
Confidence            9999999999999999999999999888873

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.08  E-value=6.5e-05  Score=70.43  Aligned_cols=114  Identities=15%  Similarity=0.202  Sum_probs=89.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            7 KKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         7 ~~g~~~~~~g~y~~Al~~y~~al~~~p~~-----~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      ..-+.|-...+|..||+.-.+...+.+..     +.+|+.+|..+....+++.|+..+.+|++.+|....+-..+|.++.
T Consensus       146 qLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~  225 (389)
T COG2956         146 QLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVEL  225 (389)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHH
Confidence            34445555566666666665555555443     5677888888888889999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHhh
Q 016973           82 KLEEYETAKVALEKGASLAPGDS-RFTNLIKECEERIAEE  120 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~-~~~~~l~~~~~~l~~~  120 (379)
                      ..|+|..|+..++.+++.||..- .+...+..|...+++.
T Consensus       226 ~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~  265 (389)
T COG2956         226 AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP  265 (389)
T ss_pred             hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence            99999999999999999998764 4667777787777765

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.07  E-value=0.00019  Score=65.71  Aligned_cols=118  Identities=20%  Similarity=0.178  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR   75 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~---~~a~~~   75 (379)
                      +..|++.|...++.|+|.+|+..|..+...+|.+   ..+.+.++.++++.++|++|+..+++-+++.|++   .-++|.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            4689999999999999999999999999998877   4678899999999999999999999999999865   457888


Q ss_pred             HHHHHHhccC--------HHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHHHh
Q 016973           76 KATACMKLEE--------YETAKVALEKGASLAPGDS---RFTNLIKECEERIAE  119 (379)
Q Consensus        76 la~~~~~lg~--------y~~A~~~~~~a~~l~p~~~---~~~~~l~~~~~~l~~  119 (379)
                      +|.+++..-+        -.+|...|+..+...|+..   .+...+..+...|..
T Consensus       114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~  168 (254)
T COG4105         114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAG  168 (254)
T ss_pred             HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHH
Confidence            8998875432        3578888999999999865   344444444444433

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.04  E-value=0.00022  Score=66.02  Aligned_cols=114  Identities=14%  Similarity=0.083  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccC------------------HHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQN------------------FTEAVADANR   61 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~------------------~~eAl~~~~~   61 (379)
                      ..++..|.++++.++|++|+..|++.+..+|++   ..+++.+|.|++.++.                  ..+|+..|+.
T Consensus        70 ~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~  149 (243)
T PRK10866         70 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSK  149 (243)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHH
Confidence            356789999999999999999999999998887   5789999999766541                  3578899999


Q ss_pred             HHHhCCCC-----------------HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973           62 AIELEPSM-----------------SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (379)
Q Consensus        62 Al~l~p~~-----------------~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (379)
                      .+...|+.                 ..--+..|..|++.|.|..|+.-|+.+++..|+.+.....+..+...
T Consensus       150 li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~a  221 (243)
T PRK10866        150 LVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENA  221 (243)
T ss_pred             HHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence            99999964                 12224567779999999999999999999999888766555554443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.02  E-value=6.4e-05  Score=79.18  Aligned_cols=104  Identities=15%  Similarity=0.140  Sum_probs=95.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 016973            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSKAYWRKATA   79 (379)
Q Consensus         1 ~A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~-~~eAl~~~~~Al~l~p~~~~a~~~la~~   79 (379)
                      |+......|....+.++|++|++...++|+.+|+|..++..+|.++..++. .++|.+.|..|.+++|++..||-.++..
T Consensus         1 ~vK~aLK~Ak~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nL   80 (1238)
T KOG1127|consen    1 EVKTALKSAKDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNL   80 (1238)
T ss_pred             ChhhHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHH
Confidence            355677789999999999999999999999999999999999999999998 9999999999999999999999999999


Q ss_pred             HHh---ccCHHHHHHHHHHHHhcCCCCh
Q 016973           80 CMK---LEEYETAKVALEKGASLAPGDS  104 (379)
Q Consensus        80 ~~~---lg~y~~A~~~~~~a~~l~p~~~  104 (379)
                      |.+   .-.++++-.+|++++.+.++..
T Consensus        81 ye~~~dIl~ld~~~~~yq~~~l~le~q~  108 (1238)
T KOG1127|consen   81 YERYNDILDLDRAAKCYQRAVLILENQS  108 (1238)
T ss_pred             HHccchhhhhhHhHHHHHHHHHhhhhhh
Confidence            876   5568899999999998887654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.02  E-value=4.2e-05  Score=62.71  Aligned_cols=84  Identities=19%  Similarity=0.152  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC---ChHHHHHH
Q 016973           37 ELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLAPG---DSRFTNLI  110 (379)
Q Consensus        37 ~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~---~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~---~~~~~~~l  110 (379)
                      .+++.+|.++-.+|+.++|+..|.+++.....   -..+++.+|.+|..+|++++|+..|++++...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            46889999999999999999999999998654   3679999999999999999999999999999888   66666666


Q ss_pred             HHHHHHHHhh
Q 016973          111 KECEERIAEE  120 (379)
Q Consensus       111 ~~~~~~l~~~  120 (379)
                      +.+...++..
T Consensus        82 Al~L~~~gr~   91 (120)
T PF12688_consen   82 ALALYNLGRP   91 (120)
T ss_pred             HHHHHHCCCH
Confidence            6655544443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.01  E-value=8e-06  Score=76.90  Aligned_cols=82  Identities=17%  Similarity=0.176  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 016973           39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA  118 (379)
Q Consensus        39 ~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~  118 (379)
                      +-.+|..|+++|+|++||.||.+++.++|.++..+.++|.+|+++++|..|...+..|+.|+-....+...+..+...|+
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            46689999999999999999999999999999999999999999999999999999999998766555555555544444


Q ss_pred             hh
Q 016973          119 EE  120 (379)
Q Consensus       119 ~~  120 (379)
                      ..
T Consensus       180 ~~  181 (536)
T KOG4648|consen  180 NN  181 (536)
T ss_pred             hH
Confidence            43

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.99  E-value=4.7e-05  Score=76.94  Aligned_cols=118  Identities=14%  Similarity=0.045  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      +.+...|..+...|+-++|..+...+++.++.+..+|.-+|..+..-++|++|+.+|..|+.+.|++-..++-++....+
T Consensus        42 eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q  121 (700)
T KOG1156|consen   42 ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ  121 (700)
T ss_pred             hhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            34566788888899999999999999999998888888899998888999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +++|+-....-.+.+++.|+....+...+..+-.++..
T Consensus       122 mRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y  159 (700)
T KOG1156|consen  122 MRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEY  159 (700)
T ss_pred             HHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            99999888888888888888877766666666655554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.96  E-value=0.00022  Score=72.81  Aligned_cols=97  Identities=20%  Similarity=0.118  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      .++-.|..+-..|+|++|+.++++||...|..+++|+.+|.+|-+.|++.+|...++.|..++..+.-..-..+..+++.
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa  275 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRA  275 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC
Confidence            34667888999999999999999999999999999999999999999999999999999999999988888899999999


Q ss_pred             cCHHHHHHHHHHHHhcC
Q 016973           84 EEYETAKVALEKGASLA  100 (379)
Q Consensus        84 g~y~~A~~~~~~a~~l~  100 (379)
                      |+.++|...+....+-+
T Consensus       276 ~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  276 GRIEEAEKTASLFTRED  292 (517)
T ss_pred             CCHHHHHHHHHhhcCCC
Confidence            99999999988776655

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.96  E-value=2e-05  Score=52.53  Aligned_cols=42  Identities=26%  Similarity=0.238  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973           37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (379)
Q Consensus        37 ~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~   78 (379)
                      .+++.+|.+|..+|++++|++.|+++++.+|+++.+++.+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            345556666666666666666666666666666666665553

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.94  E-value=6e-05  Score=71.53  Aligned_cols=89  Identities=16%  Similarity=0.209  Sum_probs=45.1

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCH-HHHHHHHHH
Q 016973           17 YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY-ETAKVALEK   95 (379)
Q Consensus        17 ~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y-~~A~~~~~~   95 (379)
                      .+.+|.-.|++.....+.++..+..+|.|++++|+|++|...+..|+..+|.++.++.+++.+...+|+. +.+..++.+
T Consensus       182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q  261 (290)
T PF04733_consen  182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ  261 (290)
T ss_dssp             CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence            3555555555544444455555555555555555555555555555555555555555555555555555 334445555


Q ss_pred             HHhcCCCChH
Q 016973           96 GASLAPGDSR  105 (379)
Q Consensus        96 a~~l~p~~~~  105 (379)
                      ....+|+++-
T Consensus       262 L~~~~p~h~~  271 (290)
T PF04733_consen  262 LKQSNPNHPL  271 (290)
T ss_dssp             CHHHTTTSHH
T ss_pred             HHHhCCCChH
Confidence            5555555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.94  E-value=1.3e-05  Score=49.97  Aligned_cols=32  Identities=28%  Similarity=0.505  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 016973           71 KAYWRKATACMKLEEYETAKVALEKGASLAPG  102 (379)
Q Consensus        71 ~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~  102 (379)
                      .+|+++|.+|+.+|+|++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45666666666666666666666666666654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.94  E-value=0.00029  Score=59.48  Aligned_cols=95  Identities=21%  Similarity=0.194  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHccCHHHHHHHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------------------AELFADRAQASIKLQNFTEAVADANR   61 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~----------------------~~~~~~ra~~~~~lg~~~eAl~~~~~   61 (379)
                      .+...|......++...++..|.+++.+....                      ..++..++.++...|++++|+..+.+
T Consensus         8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~   87 (146)
T PF03704_consen    8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR   87 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            44566777888999999999999999983221                      34556677778889999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 016973           62 AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGAS   98 (379)
Q Consensus        62 Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~   98 (379)
                      ++.++|.+-.+|..+-.+|..+|++..|+..|+++..
T Consensus        88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.90  E-value=2.4e-05  Score=48.61  Aligned_cols=34  Identities=29%  Similarity=0.457  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC
Q 016973           70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGD  103 (379)
Q Consensus        70 ~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~  103 (379)
                      +.+++.+|.+++.+|+|++|+.+|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3567777777777777777777777777777764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.89  E-value=1.3e-05  Score=50.30  Aligned_cols=32  Identities=34%  Similarity=0.649  Sum_probs=15.9

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH
Q 016973           25 YSQAIEISPNSAELFADRAQASIKLQNFTEAV   56 (379)
Q Consensus        25 y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl   56 (379)
                      |++||+++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            44455555555555555555555555554443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.88  E-value=0.00014  Score=73.67  Aligned_cols=114  Identities=18%  Similarity=0.059  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      .|+..++..-..++.++|++++.++|...|...-+|+.+|+++.++++.+.|...|...++..|..+..|+.++.+-...
T Consensus       653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~  732 (913)
T KOG0495|consen  653 VWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD  732 (913)
T ss_pred             hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence            45566677778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973           84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (379)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l  117 (379)
                      |+.-.|...|.++.-.+|.+..++...-+++.+.
T Consensus       733 ~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~  766 (913)
T KOG0495|consen  733 GQLVRARSILDRARLKNPKNALLWLESIRMELRA  766 (913)
T ss_pred             cchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHc
Confidence            9999999999999999999987644444443333

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.88  E-value=0.00011  Score=69.63  Aligned_cols=103  Identities=21%  Similarity=0.227  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------
Q 016973            2 ATDLEKKAKEAFID-DYFELAYDLYSQAIEISPN--S----AELFADRAQASIKLQNFTEAVADANRAIELEPS------   68 (379)
Q Consensus         2 A~~l~~~g~~~~~~-g~y~~Al~~y~~al~~~p~--~----~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~------   68 (379)
                      |..+...|..+... |+++.|+++|.+|+.+...  .    ..++.+.|.++.++|+|++|+..|+++....-.      
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~  193 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY  193 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence            45677788888888 9999999999999998221  2    467889999999999999999999999876421      


Q ss_pred             -CHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCh
Q 016973           69 -MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (379)
Q Consensus        69 -~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~  104 (379)
                       ....+++.++|++.+|++..|...|.+....+|.-.
T Consensus       194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~  230 (282)
T PF14938_consen  194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA  230 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence             124567888999999999999999999999998543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.88  E-value=5.6e-05  Score=77.38  Aligned_cols=99  Identities=15%  Similarity=0.148  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..|+..|.++.+.++++.|..+|.+++.++|++.++|.|++.+|+++++-.+|...+.+|+..+-.++..|.+.-.....
T Consensus       520 ~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvd  599 (777)
T KOG1128|consen  520 GTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVD  599 (777)
T ss_pred             hHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhh
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCC
Q 016973           83 LEEYETAKVALEKGASLAP  101 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p  101 (379)
                      .|.+++|+.+|.+.+.+.-
T Consensus       600 vge~eda~~A~~rll~~~~  618 (777)
T KOG1128|consen  600 VGEFEDAIKAYHRLLDLRK  618 (777)
T ss_pred             cccHHHHHHHHHHHHHhhh
Confidence            9999999999999888754

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.87  E-value=0.00014  Score=68.02  Aligned_cols=84  Identities=10%  Similarity=-0.012  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChH---HHH
Q 016973           36 AELFADRAQAS-IKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR---FTN  108 (379)
Q Consensus        36 ~~~~~~ra~~~-~~lg~~~eAl~~~~~Al~l~p~~---~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~---~~~  108 (379)
                      ....+..|..+ ++.|+|++|+..|...+...|+.   +.++|.+|.+|+..|+|++|+..|++++...|+++.   ++.
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            46778888887 56799999999999999999987   589999999999999999999999999999998654   444


Q ss_pred             HHHHHHHHHHh
Q 016973          109 LIKECEERIAE  119 (379)
Q Consensus       109 ~l~~~~~~l~~  119 (379)
                      .++.+...+++
T Consensus       222 klg~~~~~~g~  232 (263)
T PRK10803        222 KVGVIMQDKGD  232 (263)
T ss_pred             HHHHHHHHcCC
Confidence            44555544433

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.85  E-value=0.00018  Score=66.88  Aligned_cols=111  Identities=18%  Similarity=0.138  Sum_probs=95.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHH
Q 016973           11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK   90 (379)
Q Consensus        11 ~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~   90 (379)
                      .+.+..+|.+||++++--.+.+|.+-..+..+|.||+...+|..|..+|+..-.+.|...+..+..|+.+++.+.|.+|+
T Consensus        19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcccC
Q 016973           91 VALEKGASLAPGDSRFTNLIKECEERIAEETGELQ  125 (379)
Q Consensus        91 ~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~~~  125 (379)
                      ......    .+++.+....-+++..+.-+.++.+
T Consensus        99 rV~~~~----~D~~~L~~~~lqLqaAIkYse~Dl~  129 (459)
T KOG4340|consen   99 RVAFLL----LDNPALHSRVLQLQAAIKYSEGDLP  129 (459)
T ss_pred             HHHHHh----cCCHHHHHHHHHHHHHHhcccccCc
Confidence            765543    3446666667777777777654443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.84  E-value=1.8e-05  Score=49.71  Aligned_cols=33  Identities=33%  Similarity=0.436  Sum_probs=31.3

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHH
Q 016973           58 DANRAIELEPSMSKAYWRKATACMKLEEYETAK   90 (379)
Q Consensus        58 ~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~   90 (379)
                      +|++||+++|+++.+|+++|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            378999999999999999999999999999996

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.83  E-value=0.00012  Score=69.43  Aligned_cols=105  Identities=15%  Similarity=0.137  Sum_probs=83.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHH
Q 016973           10 KEAFIDDYFELAYDLYSQAIEISPNSA-ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET   88 (379)
Q Consensus        10 ~~~~~~g~y~~Al~~y~~al~~~p~~~-~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~   88 (379)
                      ..+..+.+|..|+.+++-.+..+.... ..-..+|.|++++|+|++|+..|..+..-+....+.+.++|.|+|.+|.|.+
T Consensus        30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e  109 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE  109 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence            457788999999999998887755443 5677799999999999999999999988777788999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 016973           89 AKVALEKGASLAPGDSRFTNLIKECEERIA  118 (379)
Q Consensus        89 A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~  118 (379)
                      |.....+|    |.++-..+.+-.+..+++
T Consensus       110 A~~~~~ka----~k~pL~~RLlfhlahkln  135 (557)
T KOG3785|consen  110 AKSIAEKA----PKTPLCIRLLFHLAHKLN  135 (557)
T ss_pred             HHHHHhhC----CCChHHHHHHHHHHHHhC
Confidence            98876654    555544444433333333

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.82  E-value=0.00026  Score=56.98  Aligned_cols=95  Identities=22%  Similarity=0.199  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN------------SAELFADRAQASIKLQNFTEAVADANRAIELE------   66 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~------------~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~------   66 (379)
                      ....|...+..|.|++|..-|.+|+...-.            +..++..++.++..+|+|++++....+++...      
T Consensus        12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL   91 (144)
T PF12968_consen   12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL   91 (144)
T ss_dssp             HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence            456788889999999999999999998322            14566778899999999999999999998653      


Q ss_pred             -CC----CHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973           67 -PS----MSKAYWRKATACMKLEEYETAKVALEKGASL   99 (379)
Q Consensus        67 -p~----~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l   99 (379)
                       .+    .+.+.|++|+++..+|+.++|+..|+.+-++
T Consensus        92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence             32    4667899999999999999999999988654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.82  E-value=0.00018  Score=68.27  Aligned_cols=114  Identities=16%  Similarity=0.098  Sum_probs=85.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ--NFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg--~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      .-.-.+++..++++.|.+.+..+-+.+.++....+.-|.+.+..|  ++.+|...|+......+..+..+..+|.|+..+
T Consensus       135 al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~  214 (290)
T PF04733_consen  135 ALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL  214 (290)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence            345568889999999999998887777665444444444444445  699999999998777778899999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      |+|++|...+.+++..+|+++.....+.-|...++.
T Consensus       215 ~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk  250 (290)
T PF04733_consen  215 GHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK  250 (290)
T ss_dssp             T-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred             CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence            999999999999999999999877766666555444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.79  E-value=4.5e-05  Score=47.52  Aligned_cols=32  Identities=31%  Similarity=0.537  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 016973           37 ELFADRAQASIKLQNFTEAVADANRAIELEPS   68 (379)
Q Consensus        37 ~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~   68 (379)
                      .+|+++|.+|..+|++++|+.+|++|++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45667777777777777777777777777664

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=0.00012  Score=62.24  Aligned_cols=78  Identities=17%  Similarity=0.222  Sum_probs=69.6

Q ss_pred             ccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCC---------------CceeeeccccccccccCcceEEEe
Q 016973          181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG---------------EEAYHFQPRLFGKIIPAKCRYEVL  245 (379)
Q Consensus       181 ~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~---------------~~~~~~~~~L~~~I~p~~s~~~v~  245 (379)
                      |+.+++++.+.|++-++|+.+++|.|.+.++.|+|+....+               ...|.-.+.|...|+|+..+-+..
T Consensus        43 vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~~~  122 (146)
T COG0071          43 VDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKYK  122 (146)
T ss_pred             EEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceeeEee
Confidence            88999999999999999999999999999999999986543               124777889999999998899999


Q ss_pred             CcEEEEEEeecCC
Q 016973          246 STKVEIRLAKAEP  258 (379)
Q Consensus       246 ~~kiei~L~K~~~  258 (379)
                      +.-+.|+|.|..+
T Consensus       123 nGvL~I~lpk~~~  135 (146)
T COG0071         123 NGLLTVTLPKAEP  135 (146)
T ss_pred             CcEEEEEEecccc
Confidence            9999999999764

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.78  E-value=5.4e-05  Score=50.38  Aligned_cols=43  Identities=21%  Similarity=0.271  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 016973           70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE  112 (379)
Q Consensus        70 ~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~  112 (379)
                      +.+++.+|.+|.++|++++|+..|+++++.+|++..++..++.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            4689999999999999999999999999999999998777654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=0.001  Score=62.00  Aligned_cols=98  Identities=20%  Similarity=0.100  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH-----------------------
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN-----------------------   60 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~-----------------------   60 (379)
                      .-+..|..+...|++.+|...|..++...|.+..+...++.||...|+.+.|...+.                       
T Consensus       136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q  215 (304)
T COG3118         136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ  215 (304)
T ss_pred             HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence            456788899999999999999999999999999999999999999999876543332                       


Q ss_pred             -----------HHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 016973           61 -----------RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP  101 (379)
Q Consensus        61 -----------~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p  101 (379)
                                 +.+..+|++..+-+.+|..|...|+++.|...+-..++.+-
T Consensus       216 aa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~  267 (304)
T COG3118         216 AAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR  267 (304)
T ss_pred             HhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence                       22233688999999999999999999999998888777754

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.75  E-value=0.00027  Score=70.91  Aligned_cols=101  Identities=18%  Similarity=0.185  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH---------------------------------HHHHHHHHc
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFA---------------------------------DRAQASIKL   49 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~---------------------------------~ra~~~~~l   49 (379)
                      .+++..-+.+...|+|++|+...+++|...|++..++.                                 .+|.|++++
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl   92 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL   92 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence            46677777888888888888888888888777644444                                 455555555


Q ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHH
Q 016973           50 QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF  106 (379)
Q Consensus        50 g~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~  106 (379)
                      ++.++|+.++.   .+++.+......+|+++|++|+|++|+..|+...+.+-++.+.
T Consensus        93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~  146 (652)
T KOG2376|consen   93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE  146 (652)
T ss_pred             ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence            55555555554   3444555677777888888888888888888777766655543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.74  E-value=0.00042  Score=65.81  Aligned_cols=114  Identities=18%  Similarity=0.105  Sum_probs=88.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH--------------HhCC----
Q 016973            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAI--------------ELEP----   67 (379)
Q Consensus         6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al--------------~l~p----   67 (379)
                      ...|.++|..|+|++|+..|+-+...+..+.++..++|.|++-+|.|.+|.....+|-              +++.    
T Consensus        61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~  140 (557)
T KOG3785|consen   61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRI  140 (557)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHH
Confidence            4578999999999999999999999877788999999999999999999877655432              2221    


Q ss_pred             --------CCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           68 --------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        68 --------~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                              +..+-.+.+|.+++..-.|.+|+..|.+++.-+|+-..+.-.++.|..++.-
T Consensus       141 ~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDY  200 (557)
T KOG3785|consen  141 LTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDY  200 (557)
T ss_pred             HHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcch
Confidence                    1234456677777777888999999999888888877777777777665443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.71  E-value=0.00039  Score=69.86  Aligned_cols=21  Identities=24%  Similarity=0.332  Sum_probs=16.9

Q ss_pred             HHHHHHHHhccCHHHHHHHHH
Q 016973           74 WRKATACMKLEEYETAKVALE   94 (379)
Q Consensus        74 ~~la~~~~~lg~y~~A~~~~~   94 (379)
                      |.+|.|+|+++..++|+.++.
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~  103 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK  103 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh
Confidence            677888888888888888777

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.66  E-value=0.00025  Score=49.15  Aligned_cols=49  Identities=22%  Similarity=0.312  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           71 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        71 ~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      +.+|.+|+.++++|+|..|..+...+++++|+|.++......++.++..
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k   50 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK   50 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence            4678899999999999999999999999999999999888888887765

>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins

Probab=97.65  E-value=0.00025  Score=55.24  Aligned_cols=75  Identities=15%  Similarity=0.192  Sum_probs=63.2

Q ss_pred             ccccccCCeEEEEEEeCCCCCCceEEEEeec-EEEEEEEcC-----C----------CceeeeccccccccccCcceEEE
Q 016973          181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQ-ILSVSIDVP-----G----------EEAYHFQPRLFGKIIPAKCRYEV  244 (379)
Q Consensus       181 ~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~-~l~v~~~~~-----~----------~~~~~~~~~L~~~I~p~~s~~~v  244 (379)
                      ++|+++++.+.|.+.++|+.++++.|.+..+ .|+|+....     .          ...|.-.+.|-..|+++..+.+.
T Consensus         2 ~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~~   81 (92)
T cd06472           2 VDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAFL   81 (92)
T ss_pred             ccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEEE
Confidence            7899999999999999999999999999874 788886421     1          11466778999999999989999


Q ss_pred             eCcEEEEEEee
Q 016973          245 LSTKVEIRLAK  255 (379)
Q Consensus       245 ~~~kiei~L~K  255 (379)
                      .+.-++|+|.|
T Consensus        82 ~nGvL~I~lPK   92 (92)
T cd06472          82 ENGVLTVTVPK   92 (92)
T ss_pred             ECCEEEEEecC
Confidence            99999999876

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.63  E-value=0.00098  Score=55.91  Aligned_cols=71  Identities=24%  Similarity=0.239  Sum_probs=65.6

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChH
Q 016973           35 SAELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR  105 (379)
Q Consensus        35 ~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~---~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~  105 (379)
                      .+..++..|...++.|+|.+|+..|+.+....|.   -..+.+.+|.+|+..++|.+|+..+++.++|+|.++.
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~   82 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN   82 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence            3667899999999999999999999999998874   5689999999999999999999999999999999886

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.62  E-value=0.00016  Score=67.14  Aligned_cols=92  Identities=23%  Similarity=0.265  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CC---------
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE----PS---------   68 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~----p~---------   68 (379)
                      |+.+++.|..+|+.|+|+.|++-|+.|++...-++.+-++.|.|+++.++|..|+.....++...    |.         
T Consensus       144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg  223 (459)
T KOG4340|consen  144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG  223 (459)
T ss_pred             cchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc
Confidence            34566777788888888888888888888877777777888888888888888888777766542    31         


Q ss_pred             ----------------CHHHHHHHHHHHHhccCHHHHHHHH
Q 016973           69 ----------------MSKAYWRKATACMKLEEYETAKVAL   93 (379)
Q Consensus        69 ----------------~~~a~~~la~~~~~lg~y~~A~~~~   93 (379)
                                      ..+++...+-++|+.|+|+.|.+.+
T Consensus       224 iDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL  264 (459)
T KOG4340|consen  224 IDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL  264 (459)
T ss_pred             CchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence                            1345555666677777777766554

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.60  E-value=0.00031  Score=62.55  Aligned_cols=100  Identities=14%  Similarity=0.170  Sum_probs=86.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----------
Q 016973            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-----------   69 (379)
Q Consensus         1 ~A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~-----------   69 (379)
                      |++.+.-.|.-+...|+|+.|++.|+-.++++|.+-.+..|||.+++--|+|.-|.+++..-.+-+|++           
T Consensus        98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E  177 (297)
T COG4785          98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE  177 (297)
T ss_pred             cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            677888899999999999999999999999999999999999999999999999999988777666531           


Q ss_pred             -----------------------------------------------------------HHHHHHHHHHHHhccCHHHHH
Q 016973           70 -----------------------------------------------------------SKAYWRKATACMKLEEYETAK   90 (379)
Q Consensus        70 -----------------------------------------------------------~~a~~~la~~~~~lg~y~~A~   90 (379)
                                                                                 .+.+|.+|..+..+|+.++|.
T Consensus       178 ~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~  257 (297)
T COG4785         178 QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEAT  257 (297)
T ss_pred             hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence                                                                       346688888888888899998


Q ss_pred             HHHHHHHhcC
Q 016973           91 VALEKGASLA  100 (379)
Q Consensus        91 ~~~~~a~~l~  100 (379)
                      ..|+-++..+
T Consensus       258 ~LfKLaiann  267 (297)
T COG4785         258 ALFKLAVANN  267 (297)
T ss_pred             HHHHHHHHHh
Confidence            8888777554

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.58  E-value=0.00018  Score=44.52  Aligned_cols=32  Identities=34%  Similarity=0.487  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 016973           37 ELFADRAQASIKLQNFTEAVADANRAIELEPS   68 (379)
Q Consensus        37 ~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~   68 (379)
                      .+++.+|.+++.+|++++|+.+|.+++.++|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.58  E-value=0.00033  Score=66.26  Aligned_cols=98  Identities=23%  Similarity=0.188  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISP--NS----AELFADRAQASIKLQNFTEAVADANRAIELEP------SMS   70 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p--~~----~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p------~~~   70 (379)
                      +.+...|+.+-..++|.+|..+|.++....-  .+    ...|..-+.||.+. ++++|+.+|.+|+.+.-      .-+
T Consensus        36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA  114 (282)
T PF14938_consen   36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAA  114 (282)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            4556678889999999999999999988732  11    45677777777665 99999999999998732      236


Q ss_pred             HHHHHHHHHHHhc-cCHHHHHHHHHHHHhcCC
Q 016973           71 KAYWRKATACMKL-EEYETAKVALEKGASLAP  101 (379)
Q Consensus        71 ~a~~~la~~~~~l-g~y~~A~~~~~~a~~l~p  101 (379)
                      .++.++|.+|... |++++|+.+|++|..+..
T Consensus       115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~  146 (282)
T PF14938_consen  115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYE  146 (282)
T ss_dssp             HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            7899999999998 999999999999999854

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.55  E-value=0.0015  Score=68.47  Aligned_cols=107  Identities=13%  Similarity=0.040  Sum_probs=92.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHH
Q 016973            9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET   88 (379)
Q Consensus         9 g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~   88 (379)
                      -......+++..|+....+.++..|+...+....|..++++|++++|..+++..-...+++-..+-.+-.||..++++++
T Consensus        16 i~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~   95 (932)
T KOG2053|consen   16 IYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE   95 (932)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence            34567889999999999999999999999999999999999999999988877777777888888889999999999999


Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973           89 AKVALEKGASLAPGDSRFTNLIKECEER  116 (379)
Q Consensus        89 A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (379)
                      |..+|+++..-+|+ .+....+-.+.-+
T Consensus        96 ~~~~Ye~~~~~~P~-eell~~lFmayvR  122 (932)
T KOG2053|consen   96 AVHLYERANQKYPS-EELLYHLFMAYVR  122 (932)
T ss_pred             HHHHHHHHHhhCCc-HHHHHHHHHHHHH
Confidence            99999999999999 5555554444433

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.54  E-value=0.00046  Score=70.68  Aligned_cols=67  Identities=18%  Similarity=0.098  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSK   71 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~   71 (379)
                      .+...|..+...|++++|...|++|+.++| +..+|..+|.++...|++++|+..|.+|+.++|..+.
T Consensus       422 ~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        422 IYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            355567788889999999999999999999 5889999999999999999999999999999998875

>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]

Probab=97.54  E-value=0.00014  Score=70.48  Aligned_cols=86  Identities=15%  Similarity=0.232  Sum_probs=72.7

Q ss_pred             ccccccccCCeEEEEEEeCC-CCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeC-cEEEEEEeec
Q 016973          179 LMHEFYQKPEEVVVTVFAKG-IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAKA  256 (379)
Q Consensus       179 ~~~~W~Qt~~~V~i~i~~k~-~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~-~kiei~L~K~  256 (379)
                      +.|.|.||.+.|.|++.+.. ++..++.|.+..+.|.+.+.    .+-.|+..||+.|.-|.|.|.|.. .++|+.|.|+
T Consensus       290 p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~~v~v~~~----dh~~~~g~lyasv~he~s~~ii~ean~Le~sl~K~  365 (596)
T KOG4379|consen  290 PSYSWSQTDDNVLIRFNVPSTASAKEINIQGSKTTVVVKHL----DHVIFDGELYASVGHELSAFIIAEANGLELSLTKA  365 (596)
T ss_pred             ccceeeeccCcceEEEecccccccceEEEEecCceEEEEee----eeEEeccchhhhccccchhhhhhhhccceEEEeec
Confidence            44889999999999998865 66789999999998877764    245678899999999999999977 7999999999


Q ss_pred             CC-CCCCccccCC
Q 016973          257 EP-IQWSSLEFSK  268 (379)
Q Consensus       257 ~~-~~W~~L~~~~  268 (379)
                      +. ..|++|-..+
T Consensus       366 de~~twprL~~~d  378 (596)
T KOG4379|consen  366 DEIQTWPRLFAQD  378 (596)
T ss_pred             ccccccchheeec
Confidence            54 7899998654

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.47  E-value=0.00086  Score=58.20  Aligned_cols=69  Identities=20%  Similarity=0.239  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-----------HHHHHHHHH
Q 016973            2 ATDLEKKAKEAFID----------DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-----------FTEAVADAN   60 (379)
Q Consensus         2 A~~l~~~g~~~~~~----------g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~-----------~~eAl~~~~   60 (379)
                      ++.|.+-|..+...          .-+++|+.-|++||.++|+...+++++|.+|..++.           |++|..+|.
T Consensus        25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fq  104 (186)
T PF06552_consen   25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQ  104 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence            45666666666554          345788999999999999999999999999988743           788899999


Q ss_pred             HHHHhCCCCH
Q 016973           61 RAIELEPSMS   70 (379)
Q Consensus        61 ~Al~l~p~~~   70 (379)
                      +|+.++|.+.
T Consensus       105 kAv~~~P~ne  114 (186)
T PF06552_consen  105 KAVDEDPNNE  114 (186)
T ss_dssp             HHHHH-TT-H
T ss_pred             HHHhcCCCcH
Confidence            9999999776

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.44  E-value=0.0048  Score=53.06  Aligned_cols=98  Identities=27%  Similarity=0.277  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHH
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQ-ASIKLQNFTEAVADANRAIELEP---SMSKAYWRKATAC   80 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~-~~~~lg~~~eAl~~~~~Al~l~p---~~~~a~~~la~~~   80 (379)
                      +...|..+...+++..|+..+..++...+.+.......+. ++...|+++.|+..+.+++.+.+   .....++.++..+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (291)
T COG0457          98 LLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALL  177 (291)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHH
Confidence            4445555555555666666666666555544333333343 55556666666666666555444   2344444455555


Q ss_pred             HhccCHHHHHHHHHHHHhcCCC
Q 016973           81 MKLEEYETAKVALEKGASLAPG  102 (379)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~  102 (379)
                      ...+++..|+..+.+++...+.
T Consensus       178 ~~~~~~~~a~~~~~~~~~~~~~  199 (291)
T COG0457         178 EALGRYEEALELLEKALKLNPD  199 (291)
T ss_pred             HHhcCHHHHHHHHHHHHhhCcc
Confidence            5555666666666666655555

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.42  E-value=0.0014  Score=52.29  Aligned_cols=92  Identities=22%  Similarity=0.239  Sum_probs=78.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCCHHHH
Q 016973            8 KAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIKLQ-----------NFTEAVADANRAIELEPSMSKAY   73 (379)
Q Consensus         8 ~g~~~~~~g~y~~Al~~y~~al~~~p~~~---~~~~~ra~~~~~lg-----------~~~eAl~~~~~Al~l~p~~~~a~   73 (379)
                      +|..++.+|++-+|+++.+..+..++++.   .++..-|.+++++.           -+-.|+++|.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            57889999999999999999999988775   56666777776663           24579999999999999999999


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973           74 WRKATACMKLEEYETAKVALEKGASL   99 (379)
Q Consensus        74 ~~la~~~~~lg~y~~A~~~~~~a~~l   99 (379)
                      |.+|.-+-....|+++..-.++++..
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            99998888888888888888888765

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.40  E-value=0.0053  Score=59.23  Aligned_cols=118  Identities=14%  Similarity=0.099  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP-SMSKAYWRKATACM   81 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p-~~~~a~~~la~~~~   81 (379)
                      ......|..-+..|+|..|..+..++-+..+....+|..-|.+..++|+++.|-.++.++-++.+ +.-.+.+.++..+.
T Consensus        85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll  164 (400)
T COG3071          85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL  164 (400)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence            44567788889999999999999998888888788888888899999999999999999988843 35577888999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      ..|+|..|.....++++..|.++.+.....++...++.-
T Consensus       165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~  203 (400)
T COG3071         165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAW  203 (400)
T ss_pred             hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccH
Confidence            999999999999999999999999888888887776664

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.00023  Score=67.62  Aligned_cols=117  Identities=21%  Similarity=0.264  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------C--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISP-----------N--------SAELFADRAQASIKLQNFTEAVADANRAIE   64 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p-----------~--------~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~   64 (379)
                      ...+.|+..|+.++|..|+.-|.+++..-.           +        -...+.+.+.|.++++.+..|+-....+++
T Consensus       224 ~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~  303 (372)
T KOG0546|consen  224 KKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR  303 (372)
T ss_pred             hhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc
Confidence            345678899999999999999999988622           1        134566788999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           65 LEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        65 l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      .++....+|||++..+..+.++++|+..+..+....|++..+...+......+.+.
T Consensus       304 ~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~  359 (372)
T KOG0546|consen  304 DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY  359 (372)
T ss_pred             cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence            99999999999999999999999999999999999999999888888777776665

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.39  E-value=0.0032  Score=55.34  Aligned_cols=99  Identities=13%  Similarity=0.043  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      ....|..++..+++++|+..++.++....+.   ..+-.++|.+++++|.+++|+..++....-+ -.+...-.+|.++.
T Consensus        92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill  170 (207)
T COG2976          92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILL  170 (207)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHH
Confidence            4667889999999999999999999764332   4567889999999999999998776543221 12345677999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCCh
Q 016973           82 KLEEYETAKVALEKGASLAPGDS  104 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~  104 (379)
                      ..|+-++|+..|++++..+++..
T Consensus       171 ~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         171 AKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             HcCchHHHHHHHHHHHHccCChH
Confidence            99999999999999999985443

>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=97.39  E-value=0.0008  Score=51.35  Aligned_cols=74  Identities=19%  Similarity=0.284  Sum_probs=63.9

Q ss_pred             cccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCC--------------CceeeeccccccccccCcceEEEeCc
Q 016973          182 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------------EEAYHFQPRLFGKIIPAKCRYEVLST  247 (379)
Q Consensus       182 ~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~--------------~~~~~~~~~L~~~I~p~~s~~~v~~~  247 (379)
                      +++++++.+.|.|.++|+.++++.|.+..+.|.|+.....              ...|...+.|-..|+++..+..+.+.
T Consensus         1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G   80 (88)
T cd06464           1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENG   80 (88)
T ss_pred             CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCC
Confidence            4678899999999999999999999999999999864321              23588888999999999999999999


Q ss_pred             EEEEEEee
Q 016973          248 KVEIRLAK  255 (379)
Q Consensus       248 kiei~L~K  255 (379)
                      -++|++.|
T Consensus        81 ~L~I~~pk   88 (88)
T cd06464          81 VLTITLPK   88 (88)
T ss_pred             EEEEEEcC
Confidence            99998875

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>PRK10941 hypothetical protein; Provisional

Probab=97.38  E-value=0.0017  Score=60.80  Aligned_cols=77  Identities=12%  Similarity=0.099  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973           37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (379)
Q Consensus        37 ~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (379)
                      ..+.++=.+|.+.++++.|+.+.++.+.++|+++.-+.-+|.+|.++|++..|...|+..++..|+++........+
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            34566778889999999999999999999999999999999999999999999999999999999999765444433

>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry

Probab=97.37  E-value=0.0011  Score=52.46  Aligned_cols=77  Identities=16%  Similarity=0.251  Sum_probs=61.3

Q ss_pred             cccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcC----CC---------ceeeeccccccccccCcceEEEeCcE
Q 016973          182 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE---------EAYHFQPRLFGKIIPAKCRYEVLSTK  248 (379)
Q Consensus       182 ~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~----~~---------~~~~~~~~L~~~I~p~~s~~~v~~~k  248 (379)
                      ||+++++.+.|.+.++|+.++++.|.+.++.|.|+....    ++         ..|.-.+.|-..|++++.+.++....
T Consensus         1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~Gv   80 (102)
T PF00011_consen    1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENGV   80 (102)
T ss_dssp             EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTSE
T ss_pred             CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCCE
Confidence            689999999999999999999999999999999886433    11         24666788999999999999998899


Q ss_pred             EEEEEeecCC
Q 016973          249 VEIRLAKAEP  258 (379)
Q Consensus       249 iei~L~K~~~  258 (379)
                      +.|++.|...
T Consensus        81 L~I~~pk~~~   90 (102)
T PF00011_consen   81 LTITIPKKEE   90 (102)
T ss_dssp             EEEEEEBSSS
T ss_pred             EEEEEEcccc
Confidence            9999999754

; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.31  E-value=0.00036  Score=43.25  Aligned_cols=32  Identities=31%  Similarity=0.476  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 016973           71 KAYWRKATACMKLEEYETAKVALEKGASLAPG  102 (379)
Q Consensus        71 ~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~  102 (379)
                      ++|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            45667777777777777777777777766663

...

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.31  E-value=0.0014  Score=63.50  Aligned_cols=94  Identities=18%  Similarity=0.249  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISP--------NS----------AELFADRAQASIKLQNFTEAVADANRAIELE   66 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p--------~~----------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~   66 (379)
                      ....|..+|++++|..|+--|.-||++-.        ..          ...-..+..||+++++.+-|+....+.|.++
T Consensus       179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln  258 (569)
T PF15015_consen  179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN  258 (569)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence            34567788888888888888888887721        11          2234568999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 016973           67 PSMSKAYWRKATACMKLEEYETAKVALEKGAS   98 (379)
Q Consensus        67 p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~   98 (379)
                      |.+..-|++.|.|+..+.+|.+|...+-.+.-
T Consensus       259 P~~frnHLrqAavfR~LeRy~eAarSamia~y  290 (569)
T PF15015_consen  259 PSYFRNHLRQAAVFRRLERYSEAARSAMIADY  290 (569)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999877665543

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.00025  Score=63.96  Aligned_cols=79  Identities=15%  Similarity=0.271  Sum_probs=69.1

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 016973           40 ADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA  118 (379)
Q Consensus        40 ~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~  118 (379)
                      -.-|.+++.-.+|..|+.+|.+||.++|..+..|-+++.||+++.+++.+...++++++++|+.......++.+.....
T Consensus        14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~   92 (284)
T KOG4642|consen   14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK   92 (284)
T ss_pred             HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence            3456777788899999999999999999999999999999999999999999999999999998877766666654433

>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18

Probab=97.30  E-value=0.0011  Score=51.65  Aligned_cols=74  Identities=14%  Similarity=0.206  Sum_probs=60.1

Q ss_pred             ccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCC--------C---------ceeeeccccccccccCcceEE
Q 016973          181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------E---------EAYHFQPRLFGKIIPAKCRYE  243 (379)
Q Consensus       181 ~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~--------~---------~~~~~~~~L~~~I~p~~s~~~  243 (379)
                      .+++++++.+.|.+.++|+.++++.|++..+.|.|+.....        +         ..|.-.+.|- .|+++..+.+
T Consensus         3 ~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A~   81 (93)
T cd06471           3 TDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKAK   81 (93)
T ss_pred             eeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEEE
Confidence            78999999999999999999999999999999999764321        1         0244445564 7889889999


Q ss_pred             EeCcEEEEEEee
Q 016973          244 VLSTKVEIRLAK  255 (379)
Q Consensus       244 v~~~kiei~L~K  255 (379)
                      ..+.-+.|+|.|
T Consensus        82 ~~dGvL~I~lPK   93 (93)
T cd06471          82 YENGVLKITLPK   93 (93)
T ss_pred             EECCEEEEEEcC
Confidence            998899999876

5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.28  E-value=0.0053  Score=50.74  Aligned_cols=87  Identities=16%  Similarity=0.218  Sum_probs=73.8

Q ss_pred             CCHHHHHHHHHHHHHccC---HHHHHHHHHHHHH-hCC-CCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHH
Q 016973           34 NSAELFADRAQASIKLQN---FTEAVADANRAIE-LEP-SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN  108 (379)
Q Consensus        34 ~~~~~~~~ra~~~~~lg~---~~eAl~~~~~Al~-l~p-~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~  108 (379)
                      -.....+++|.|+.+..+   ..+.+..++..+. -+| ...+..|.+|..++++|+|+.|+.+...+++..|+|.++..
T Consensus        30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE  109 (149)
T ss_pred             chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            345678899999988754   5778889988886 445 35678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 016973          109 LIKECEERIAEE  120 (379)
Q Consensus       109 ~l~~~~~~l~~~  120 (379)
                      ....++.++...
T Consensus       110 Lk~~ied~itke  121 (149)
T KOG3364|consen  110 LKETIEDKITKE  121 (149)
T ss_pred             HHHHHHHHHhhc
Confidence            888888887765

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.25  E-value=0.0028  Score=58.54  Aligned_cols=75  Identities=17%  Similarity=0.173  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK   76 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~l   76 (379)
                      ++++|..|.++|.+|+|.+|...|-.++...|.+   +++++.+|.|...+|+.++|...|..++..-|....+-.-.
T Consensus       178 ~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak  255 (262)
T COG1729         178 PNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAK  255 (262)
T ss_pred             chhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            4688999999999999999999999999997776   79999999999999999999999999999999887665543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.23  E-value=0.0048  Score=58.33  Aligned_cols=101  Identities=14%  Similarity=0.085  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK-LQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~-lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      .|+...+.+.+.+..+.|...|.+|+.....+..+|...|...++ .++...|...|+.+++..|.+...|+.....+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            456667777778889999999999997666678889999999777 4666669999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCCh
Q 016973           83 LEEYETAKVALEKGASLAPGDS  104 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~  104 (379)
                      +++.+.|...|++++..-+...
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~  104 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEK  104 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHH
T ss_pred             hCcHHHHHHHHHHHHHhcCchh
Confidence            9999999999999999877766

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.23  E-value=0.00018  Score=69.40  Aligned_cols=96  Identities=14%  Similarity=0.170  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----C--CHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEP----S--MSK   71 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p----~--~~~   71 (379)
                      ++-+.|+.||-.|+|+.||..-+.-|.+.-..      -.++.++|.||+-+|+|+.|+++|.+++.+.-    .  -+.
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            34456667777777777777655555542211      23566677777777777777777766654432    1  234


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973           72 AYWRKATACMKLEEYETAKVALEKGASL   99 (379)
Q Consensus        72 a~~~la~~~~~lg~y~~A~~~~~~a~~l   99 (379)
                      ..|.+|..|.-+.+|..|+.++.+-+.+
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaI  304 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAI  304 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            5566666666666666666666655544

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.22  E-value=0.0085  Score=51.46  Aligned_cols=93  Identities=27%  Similarity=0.370  Sum_probs=77.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCH
Q 016973           11 EAFIDDYFELAYDLYSQAIEISP---NSAELFADRAQASIKLQNFTEAVADANRAIELEPS-MSKAYWRKATACMKLEEY   86 (379)
Q Consensus        11 ~~~~~g~y~~Al~~y~~al~~~p---~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~-~~~a~~~la~~~~~lg~y   86 (379)
                      .++..|+++.|+..|.+++..++   .....+..++..+...++++.|+..+.+++...+. ...++..++.++...+++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY  218 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence            78888899999999988888776   34566677777778888899999999998888888 688888888888888888


Q ss_pred             HHHHHHHHHHHhcCCCC
Q 016973           87 ETAKVALEKGASLAPGD  103 (379)
Q Consensus        87 ~~A~~~~~~a~~l~p~~  103 (379)
                      ..|+..+..++...|..
T Consensus       219 ~~a~~~~~~~~~~~~~~  235 (291)
T COG0457         219 EEALEYYEKALELDPDN  235 (291)
T ss_pred             HHHHHHHHHHHhhCccc
Confidence            99999888888888873

>PRK10941 hypothetical protein; Provisional

Probab=97.17  E-value=0.0042  Score=58.17  Aligned_cols=76  Identities=17%  Similarity=0.144  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~   80 (379)
                      +.+.-..+.+.++|+.|+.+.+..|.++|+++.-+.-||.+|.++|.+..|+.|++..++.+|+.+.+-.-+.++.
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~  259 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH  259 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            4456678999999999999999999999999999999999999999999999999999999999988877665543

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.16  E-value=0.001  Score=65.65  Aligned_cols=111  Identities=13%  Similarity=0.075  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-C------
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQA-IEISPN--------SAELFADRAQASIKLQNFTEAVADANRAIEL-E------   66 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~a-l~~~p~--------~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l-~------   66 (379)
                      ..++-+++.+|.+|+|..|.+++... +...+.        ...++.++|.++++++.|.-+...|.+|++. +      
T Consensus       241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g  320 (696)
T KOG2471|consen  241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG  320 (696)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc
Confidence            35677889999999999999987542 111221        2456789999999999999999999999961 1      


Q ss_pred             --C---------CCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973           67 --P---------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (379)
Q Consensus        67 --p---------~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (379)
                        |         ...+.+|++|+.|.+.|+.-.|.++|.++......++.+|..++.|
T Consensus       321 ~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEc  378 (696)
T KOG2471|consen  321 LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAEC  378 (696)
T ss_pred             CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence              1         3578999999999999999999999999999999999877666554

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.10  E-value=0.0017  Score=62.98  Aligned_cols=96  Identities=17%  Similarity=0.167  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEI----SPNS--AELFADRAQASIKLQNFTEAVADANRAIELEP------SMSK   71 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~----~p~~--~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p------~~~~   71 (379)
                      +.-+.|+++.-.|+|+.|+++|.+.+.+    ....  +...|.+|.+|.-++.|+.||.+..+-+.+..      .-..
T Consensus       237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R  316 (639)
T KOG1130|consen  237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR  316 (639)
T ss_pred             hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            4567899999999999999999887766    2222  34567899999999999999999988777653      3467


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973           72 AYWRKATACMKLEEYETAKVALEKGASL   99 (379)
Q Consensus        72 a~~~la~~~~~lg~y~~A~~~~~~a~~l   99 (379)
                      +++.+|.++..+|..++|+.+.+..+++
T Consensus       317 acwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  317 ACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999998888776

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.04  E-value=0.0053  Score=62.43  Aligned_cols=96  Identities=18%  Similarity=0.136  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA   77 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la   77 (379)
                      .+.+.|..+|+..+|..+++.|...+...|.+      .-...+++.||.++.+++.|++.+..|-+.+|+++-..+.+.
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~  435 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML  435 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            46788999999999999999999999997776      445678999999999999999999999999999999999999


Q ss_pred             HHHHhccCHHHHHHHHHHHHhc
Q 016973           78 TACMKLEEYETAKVALEKGASL   99 (379)
Q Consensus        78 ~~~~~lg~y~~A~~~~~~a~~l   99 (379)
                      .+...-+.-++|+.+.......
T Consensus       436 ~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  436 QSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHhcchHHHHHHHHHHHhh
Confidence            9999999999999988776554

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.99  E-value=0.021  Score=49.97  Aligned_cols=117  Identities=19%  Similarity=0.125  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~--~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~   80 (379)
                      ..+...++..|..+++..|...++...+.+|.  .++-.+.+|.+|-.+|++.+|...|+-++...| .+.+..+.+..+
T Consensus       125 a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~L  203 (251)
T COG4700         125 AMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEML  203 (251)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence            35778899999999999999999999999875  356667778888899999999999999999887 568888899999


Q ss_pred             HhccCHHHHHHHHHHHH----hcCCCC-hHHHHHHHHHHHHHHhh
Q 016973           81 MKLEEYETAKVALEKGA----SLAPGD-SRFTNLIKECEERIAEE  120 (379)
Q Consensus        81 ~~lg~y~~A~~~~~~a~----~l~p~~-~~~~~~l~~~~~~l~~~  120 (379)
                      ..+|+.++|.+.+....    +-.|.- .....|+.....++++.
T Consensus       204 a~qgr~~ea~aq~~~v~d~~~r~~~H~rkh~reW~~~A~~~~~qs  248 (251)
T COG4700         204 AKQGRLREANAQYVAVVDTAKRSRPHYRKHHREWIKTANERLKQS  248 (251)
T ss_pred             HHhcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhh
Confidence            99999988877665543    333432 24667888887777664

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.98  E-value=0.004  Score=62.74  Aligned_cols=104  Identities=14%  Similarity=0.080  Sum_probs=93.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHH
Q 016973           12 AFIDDYFELAYDLYSQAIEISPNSA-ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK   90 (379)
Q Consensus        12 ~~~~g~y~~Al~~y~~al~~~p~~~-~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~   90 (379)
                      .-..|+...|+.++..|+...|... ..+.++|.++++.|-...|-..+..++.+...-+..+|.+|.++..+.+.+.|+
T Consensus       617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~  696 (886)
T KOG4507|consen  617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL  696 (886)
T ss_pred             eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence            3457888999999999999988653 457899999999999999999999999999888999999999999999999999


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHH
Q 016973           91 VALEKGASLAPGDSRFTNLIKECEE  115 (379)
Q Consensus        91 ~~~~~a~~l~p~~~~~~~~l~~~~~  115 (379)
                      +.|+.|+.++|+++....-+.++.-
T Consensus       697 ~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  697 EAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             HHHHHHHhcCCCChhhHHHHHHHHH
Confidence            9999999999999988877766544

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.97  E-value=0.0039  Score=51.37  Aligned_cols=65  Identities=25%  Similarity=0.192  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC
Q 016973           39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD  103 (379)
Q Consensus        39 ~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~  103 (379)
                      +-..|.++...|+++.|++.|.+++.+.|..+.+|.++++++.-.|+-++|+..+.+++++....
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~  110 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ  110 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence            45678888889999999999999999999999999999999999999999999999999997654

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.94  E-value=0.0016  Score=40.20  Aligned_cols=31  Identities=26%  Similarity=0.444  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 016973           37 ELFADRAQASIKLQNFTEAVADANRAIELEP   67 (379)
Q Consensus        37 ~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p   67 (379)
                      .+|+.+|.+|..+|++++|+..|.++++++|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            3456666666666666666666666666665

...

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.94  E-value=0.012  Score=54.10  Aligned_cols=117  Identities=12%  Similarity=0.096  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCC--CCHHHHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIE----LEP--SMSKAYWRK   76 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~-p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~----l~p--~~~~a~~~l   76 (379)
                      .++...+++...|+|.-.+.+|.+++..+ |..+.+...+|...++.|+.+.|...|++.-+    ++.  ....++.+.
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            35667788999999999999999999998 66788889999999999999999999985443    332  345567777


Q ss_pred             HHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        77 a~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +.+|.-.++|..|...|.+++..||.++.+....+.|..-++..
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l  302 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL  302 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence            88888888999999999999999999888777777776666554

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.92  E-value=0.0068  Score=55.69  Aligned_cols=99  Identities=15%  Similarity=0.119  Sum_probs=85.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 016973            6 EKKAKEAFIDDYFELAYDLYSQAIEI------SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA   79 (379)
Q Consensus         6 ~~~g~~~~~~g~y~~Al~~y~~al~~------~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~   79 (379)
                      -..|...++.||...|-.+|+++=..      -..+.....+.+.+|...++|.+|...+.+++..++.++.+..+.|.|
T Consensus       216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc  295 (366)
T KOG2796|consen  216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC  295 (366)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence            45688999999999999999844332      223455677788888888999999999999999999999999999999


Q ss_pred             HHhccCHHHHHHHHHHHHhcCCCCh
Q 016973           80 CMKLEEYETAKVALEKGASLAPGDS  104 (379)
Q Consensus        80 ~~~lg~y~~A~~~~~~a~~l~p~~~  104 (379)
                      +..+|+..+|+..++.++...|...
T Consensus       296 llYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  296 LLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCccc
Confidence            9999999999999999999999754

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.91  E-value=0.0016  Score=39.81  Aligned_cols=31  Identities=26%  Similarity=0.339  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 016973           72 AYWRKATACMKLEEYETAKVALEKGASLAPG  102 (379)
Q Consensus        72 a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~  102 (379)
                      ++|++|.+++.+|++++|+..|++++...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            5666677777777777777777766666665

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.91  E-value=0.0031  Score=59.02  Aligned_cols=75  Identities=21%  Similarity=0.241  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~   78 (379)
                      .....|....+.|+.+.|..+|..||.+.|.+++++...|......++.-+|-++|-+|+.+.|.+.+++.+++.
T Consensus       118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            345667778888999999999999999999999999999988888888889999999999999988888877664

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.90  E-value=0.079  Score=45.40  Aligned_cols=106  Identities=16%  Similarity=0.019  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      .|+.........++.+++..++...-.+.|+.+++-..-|..++..|++.+|+..++.+..-.|..+-+--.++.|++.+
T Consensus        12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~   91 (160)
T PF09613_consen   12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL   91 (160)
T ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence            56778888999999999999999999999999999999999999999999999999999999999998888899999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 016973           84 EEYETAKVALEKGASLAPGDSRFTNLIK  111 (379)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~  111 (379)
                      |+..-=..+ ..+++..+ ++.......
T Consensus        92 ~D~~Wr~~A-~evle~~~-d~~a~~Lv~  117 (160)
T PF09613_consen   92 GDPSWRRYA-DEVLESGA-DPDARALVR  117 (160)
T ss_pred             CChHHHHHH-HHHHhcCC-ChHHHHHHH
Confidence            997643322 23444444 444433333

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.90  E-value=0.008  Score=54.68  Aligned_cols=72  Identities=22%  Similarity=0.278  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR   75 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~   75 (379)
                      -+.+.+.+++..|+|-++++....+|..+|.|.-+|+.||.++...-+.++|..||.++++++|....+--|
T Consensus       232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr  303 (329)
T KOG0545|consen  232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR  303 (329)
T ss_pred             HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence            356788999999999999999999999999999999999999999999999999999999999976655544

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.87  E-value=0.015  Score=57.54  Aligned_cols=101  Identities=15%  Similarity=0.176  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      .++.-|.--..+++++.|...|.+||..+..+..+|+..+.+-++.+....|...+++|+.+-|.--+.||..-.+-..+
T Consensus        75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L  154 (677)
T KOG1915|consen   75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML  154 (677)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            34555666677899999999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             cCHHHHHHHHHHHHhcCCCCh
Q 016973           84 EEYETAKVALEKGASLAPGDS  104 (379)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~  104 (379)
                      |+..-|...|++-+...|+..
T Consensus       155 gNi~gaRqiferW~~w~P~eq  175 (677)
T KOG1915|consen  155 GNIAGARQIFERWMEWEPDEQ  175 (677)
T ss_pred             cccHHHHHHHHHHHcCCCcHH
Confidence            999999999999999888743

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.82  E-value=0.059  Score=49.52  Aligned_cols=117  Identities=16%  Similarity=0.103  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHhCCCC--
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKL--------QNFTEAVADANRAIELEPSM--   69 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~l--------g~~~eAl~~~~~Al~l~p~~--   69 (379)
                      ..++..+.++++.++|++|+...++-+.+.|++   ..+++-+|.+++..        .-..+|+..+...+..-|+.  
T Consensus        72 qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y  151 (254)
T COG4105          72 QAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY  151 (254)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc
Confidence            357788999999999999999999999998887   45778888887765        22467889999999998863  


Q ss_pred             ---HH----------HH--HHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           70 ---SK----------AY--WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        70 ---~~----------a~--~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                         +.          +.  +..|..|.+.|.|-.|+.-++..++-.|+.......+..+.+....
T Consensus       152 a~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~  216 (254)
T COG4105         152 APDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYA  216 (254)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence               11          11  3357788899999999999999999988877666666555554433

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.80  E-value=0.0077  Score=61.13  Aligned_cols=87  Identities=23%  Similarity=0.188  Sum_probs=56.0

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhccCHHHHH
Q 016973           15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS----MSKAYWRKATACMKLEEYETAK   90 (379)
Q Consensus        15 ~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~----~~~a~~~la~~~~~lg~y~~A~   90 (379)
                      ..+...|.+++...+...|+...+++..|..+...|+.++|++.+++++.....    ..-++|.+|.++..+.+|++|.
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~  325 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA  325 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence            445566666777777777777777777777777777777777777766643222    2345666677777777777777


Q ss_pred             HHHHHHHhcCC
Q 016973           91 VALEKGASLAP  101 (379)
Q Consensus        91 ~~~~~a~~l~p  101 (379)
                      .+|.+..+.+.
T Consensus       326 ~~f~~L~~~s~  336 (468)
T PF10300_consen  326 EYFLRLLKESK  336 (468)
T ss_pred             HHHHHHHhccc
Confidence            77666666544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.78  E-value=0.011  Score=49.79  Aligned_cols=62  Identities=21%  Similarity=0.177  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL   65 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l   65 (379)
                      .+...+..+...|+++.|+..+.+++..+|.+..++..+-.+|..+|++.+|+..|.++...
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            45566778889999999999999999999999999999999999999999999999887543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.75  E-value=0.025  Score=53.37  Aligned_cols=109  Identities=17%  Similarity=0.190  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHH
Q 016973            4 DLEKKAKEAFI-DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS---KAYWRKATA   79 (379)
Q Consensus         4 ~l~~~g~~~~~-~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~---~a~~~la~~   79 (379)
                      .|...|..-+. .++...|..+|+.++...|.+..++......++.+++.+.|...|++++..-+...   ..|-+....
T Consensus        37 vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~f  116 (280)
T PF05843_consen   37 VYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEF  116 (280)
T ss_dssp             HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            35556666556 67778899999999999999999999999999999999999999999998876543   577777777


Q ss_pred             HHhccCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 016973           80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKE  112 (379)
Q Consensus        80 ~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~  112 (379)
                      -...|+.+......+++.++.|.+..+.....+
T Consensus       117 E~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~r  149 (280)
T PF05843_consen  117 ESKYGDLESVRKVEKRAEELFPEDNSLELFSDR  149 (280)
T ss_dssp             HHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHCC
T ss_pred             HHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            789999999999999999999987766554443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.73  E-value=0.0075  Score=41.77  Aligned_cols=43  Identities=21%  Similarity=0.185  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 016973           37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA   79 (379)
Q Consensus        37 ~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~   79 (379)
                      +.++.+|..++++|+|.+|++.++.++++.|++..+.-....+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            4577888889999999999999999999999888776655443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.73  E-value=0.031  Score=51.56  Aligned_cols=79  Identities=20%  Similarity=0.171  Sum_probs=53.7

Q ss_pred             HHHHHHHHHc----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 016973           40 ADRAQASIKL----QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE  115 (379)
Q Consensus        40 ~~ra~~~~~l----g~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  115 (379)
                      ..+|.++.++    +++.+|.-.|+..-.-.+..+..+..++.|+..+|+|++|...++.++.-++++++....+--+-.
T Consensus       173 tQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~  252 (299)
T KOG3081|consen  173 TQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLAL  252 (299)
T ss_pred             HHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            3344444443    345555555555444344466777778999999999999999999999999999887665555544


Q ss_pred             HHH
Q 016973          116 RIA  118 (379)
Q Consensus       116 ~l~  118 (379)
                      .++
T Consensus       253 ~~G  255 (299)
T KOG3081|consen  253 HLG  255 (299)
T ss_pred             HhC
Confidence            433

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.71  E-value=0.014  Score=59.21  Aligned_cols=92  Identities=17%  Similarity=0.114  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN----SAELFADRAQASIKLQNFTEAVADANRAIELEP-SMSKAYWRKATA   79 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~----~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p-~~~~a~~~la~~   79 (379)
                      ++..|..+...|+.++|++.|++++.....    ...+++.+|.|+.-+++|++|..++.+.++.+. ..+-..|..|.|
T Consensus       270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c  349 (468)
T PF10300_consen  270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC  349 (468)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            567899999999999999999999853222    246788899999999999999999999998754 234555667888


Q ss_pred             HHhccCHHHHHHHHHHH
Q 016973           80 CMKLEEYETAKVALEKG   96 (379)
Q Consensus        80 ~~~lg~y~~A~~~~~~a   96 (379)
                      +..+|+...+...-+++
T Consensus       350 ~~~l~~~~~~~~~~~~a  366 (468)
T PF10300_consen  350 LLMLGREEEAKEHKKEA  366 (468)
T ss_pred             HHhhccchhhhhhHHHH
Confidence            89998885555444444

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.71  E-value=0.015  Score=56.25  Aligned_cols=111  Identities=13%  Similarity=0.105  Sum_probs=88.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccC
Q 016973            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE   85 (379)
Q Consensus         6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~   85 (379)
                      ...+..+.+.|++++|.+...++|...-+.-  ++.+.-+ .+.++...=++.+++.+..+|+++..++.+|..|+..+.
T Consensus       267 ~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~-l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~  343 (400)
T COG3071         267 VAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPR-LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL  343 (400)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhh-cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH
Confidence            3456778899999999999999999854432  2333222 366888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           86 YETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        86 y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      |.+|..+|+.++...|+... ..+++.+..+++..
T Consensus       344 w~kA~~~leaAl~~~~s~~~-~~~la~~~~~~g~~  377 (400)
T COG3071         344 WGKASEALEAALKLRPSASD-YAELADALDQLGEP  377 (400)
T ss_pred             HHHHHHHHHHHHhcCCChhh-HHHHHHHHHHcCCh
Confidence            99999999999999997654 45666665555543

>smart00028 TPR Tetratricopeptide repeats

Probab=96.66  E-value=0.0031  Score=37.02  Aligned_cols=32  Identities=31%  Similarity=0.473  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 016973           71 KAYWRKATACMKLEEYETAKVALEKGASLAPG  102 (379)
Q Consensus        71 ~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~  102 (379)
                      .+++++|.+++.+|+++.|..+|+++++++|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            35666667777777777777766666666554

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.65  E-value=0.0072  Score=56.65  Aligned_cols=75  Identities=19%  Similarity=0.115  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 016973           38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE  112 (379)
Q Consensus        38 ~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~  112 (379)
                      +-.+.|.-..+.|+.++|...|..|+.++|++++++.++|+.....++.-+|-.+|-+|+.+.|.+.++....++
T Consensus       118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            334455556778999999999999999999999999999999999999999999999999999999886655444

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.65  E-value=0.0053  Score=58.70  Aligned_cols=97  Identities=18%  Similarity=0.148  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPS---------   68 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~---------   68 (379)
                      .....|+++...+.|+.+++.|+.|+.+..++      ...+..+|..+-++.++++|+-+..+|..+-..         
T Consensus       124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k  203 (518)
T KOG1941|consen  124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK  203 (518)
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence            34567899999999999999999999985444      345788999999999999999999999988542         


Q ss_pred             -CHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 016973           69 -MSKAYWRKATACMKLEEYETAKVALEKGASLA  100 (379)
Q Consensus        69 -~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~  100 (379)
                       ...++|+++++|..+|+.-+|.++++++.++.
T Consensus       204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence             24578999999999999999999999998763

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.64  E-value=0.0083  Score=62.53  Aligned_cols=115  Identities=22%  Similarity=0.353  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKL--QNFTEAVADANRAIELEPSMSKAYWRK   76 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~----~~~~~~ra~~~~~l--g~~~eAl~~~~~Al~l~p~~~~a~~~l   76 (379)
                      ..+...|+.+|..++|.+|.--|..++.+-|.+    ...+.+++.||.++  ++|..++..+..|+...|.+..+++++
T Consensus        54 ~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r  133 (748)
T KOG4151|consen   54 LELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKR  133 (748)
T ss_pred             HHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhh
Confidence            456788999999999999998999999987743    55677888888776  789999999999999999999999999


Q ss_pred             HHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973           77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (379)
Q Consensus        77 a~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l  117 (379)
                      +.+|..+++++-|+..+......+|.+..+..-..+++..+
T Consensus       134 ~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll  174 (748)
T KOG4151|consen  134 ARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL  174 (748)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence            99999999999999999888999999977666566666665

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.57  E-value=0.003  Score=62.42  Aligned_cols=77  Identities=12%  Similarity=0.114  Sum_probs=68.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 016973            6 EKKAKEAFIDDYFELAYDLYSQAIEI------------------SPNSAELFADRAQASIKLQNFTEAVADANRAIELEP   67 (379)
Q Consensus         6 ~~~g~~~~~~g~y~~Al~~y~~al~~------------------~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p   67 (379)
                      .+.|.++|+.|.|+.++.+|.+||+-                  .....+++|+.|..|.+.|+.-.|.++|.++++...
T Consensus       287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh  366 (696)
T KOG2471|consen  287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH  366 (696)
T ss_pred             cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence            46788999999999999999999961                  123478899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHh
Q 016973           68 SMSKAYWRKATACMK   82 (379)
Q Consensus        68 ~~~~a~~~la~~~~~   82 (379)
                      .++..|+|+|.|+..
T Consensus       367 ~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  367 RNPRLWLRLAECCIM  381 (696)
T ss_pred             cCcHHHHHHHHHHHH
Confidence            999999999999864

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.56  E-value=0.017  Score=54.68  Aligned_cols=66  Identities=18%  Similarity=0.302  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP   67 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p   67 (379)
                      |--+.++|-+.+.-|+|..||..+.+++.++|.+.-++++-|.|++.++++.+|++.++..++++-
T Consensus       119 avLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~  184 (390)
T KOG0551|consen  119 AVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD  184 (390)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence            445788999999999999999999999999999999999999999999999999999999877764

>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins

Probab=96.56  E-value=0.012  Score=44.62  Aligned_cols=72  Identities=8%  Similarity=0.122  Sum_probs=59.6

Q ss_pred             cccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcC--CC---ceeeeccccccccccCcceEEE-eCcEEEEEEee
Q 016973          184 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP--GE---EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIRLAK  255 (379)
Q Consensus       184 ~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~--~~---~~~~~~~~L~~~I~p~~s~~~v-~~~kiei~L~K  255 (379)
                      +.+++.+.|.+.++|+.+++|+|++..+.|+|+....  .+   ..|.-.+.|-..|+++..+-++ ....+.|++.+
T Consensus         4 ~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~   81 (81)
T cd06479           4 KTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR   81 (81)
T ss_pred             cCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence            4678899999999999999999999999999986421  22   2466778999999999999997 67788888763

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.

>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins

Probab=96.54  E-value=0.012  Score=45.16  Aligned_cols=73  Identities=8%  Similarity=0.099  Sum_probs=60.0

Q ss_pred             ccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCC----C----ceeeeccccccccccCcceEEEe-CcEEEE
Q 016973          181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG----E----EAYHFQPRLFGKIIPAKCRYEVL-STKVEI  251 (379)
Q Consensus       181 ~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~----~----~~~~~~~~L~~~I~p~~s~~~v~-~~kiei  251 (379)
                      -+++.+++.+.|.+.++|+.+++++|++.++.|.|+.....    +    ..|.-.+.|-..|++++.+-... +.-+.|
T Consensus         3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I   82 (86)
T cd06475           3 SEIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTV   82 (86)
T ss_pred             ceEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEE
Confidence            46889999999999999999999999999999999875321    1    13666778999999999998887 766777


Q ss_pred             EE
Q 016973          252 RL  253 (379)
Q Consensus       252 ~L  253 (379)
                      +|
T Consensus        83 ~l   84 (86)
T cd06475          83 EA   84 (86)
T ss_pred             Ee
Confidence            65

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat

>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa)

Probab=96.48  E-value=0.013  Score=44.98  Aligned_cols=72  Identities=10%  Similarity=0.119  Sum_probs=59.4

Q ss_pred             cccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcC----CC----ceeeeccccccccccCcceEEE-eCcEEEEEEe
Q 016973          184 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE----EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIRLA  254 (379)
Q Consensus       184 ~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~----~~----~~~~~~~~L~~~I~p~~s~~~v-~~~kiei~L~  254 (379)
                      +.+++.+.|.+.++|+.++++.|++..+.|+|+....    ++    ..|.-.+.|-..|++++.+-++ ....+.|+|.
T Consensus         6 ~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~P   85 (86)
T cd06497           6 RSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGP   85 (86)
T ss_pred             EEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEec
Confidence            4788999999999999999999999999999987431    11    1255577899999999999998 5778899887


Q ss_pred             e
Q 016973          255 K  255 (379)
Q Consensus       255 K  255 (379)
                      |
T Consensus        86 K   86 (86)
T cd06497          86 K   86 (86)
T ss_pred             C
Confidence            6

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.46  E-value=0.0058  Score=37.19  Aligned_cols=31  Identities=26%  Similarity=0.303  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 016973           38 LFADRAQASIKLQNFTEAVADANRAIELEPS   68 (379)
Q Consensus        38 ~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~   68 (379)
                      +++++|.|+.++|++++|+..|++++...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            3445555555555555555555555554443

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.43  E-value=0.0051  Score=60.82  Aligned_cols=78  Identities=21%  Similarity=0.253  Sum_probs=71.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      -+++.++++.++|..|+..+.+||+.+|...-+|++||.+...++.|.+|+.+|+....+.|+.+.+...+..|-+..
T Consensus        42 anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v  119 (476)
T KOG0376|consen   42 ANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIV  119 (476)
T ss_pred             chhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHH
Confidence            356788999999999999999999999999999999999999999999999999999999999998888777776554

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.42  E-value=0.046  Score=54.51  Aligned_cols=91  Identities=13%  Similarity=0.131  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccC-HHHHHHHHHHHHh
Q 016973           20 LAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE-YETAKVALEKGAS   98 (379)
Q Consensus        20 ~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~-y~~A~~~~~~a~~   98 (379)
                      .=..+|..|+...+.+..+|.....-..+.+.+.+-...|..++..+|+++..|...|.-.|..+. .+.|.+.|.++++
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR  168 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR  168 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence            345679999999999999999888777777889999999999999999999999999999988887 9999999999999


Q ss_pred             cCCCChHHHHHH
Q 016973           99 LAPGDSRFTNLI  110 (379)
Q Consensus        99 l~p~~~~~~~~l  110 (379)
                      ++|+.+.++...
T Consensus       169 ~npdsp~Lw~ey  180 (568)
T KOG2396|consen  169 FNPDSPKLWKEY  180 (568)
T ss_pred             cCCCChHHHHHH
Confidence            999999865443

>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=96.42  E-value=0.012  Score=44.71  Aligned_cols=68  Identities=19%  Similarity=0.194  Sum_probs=57.0

Q ss_pred             CeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCC--------ceeeeccccccccccCcceEEEeC-cEEEEEEee
Q 016973          188 EEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGE--------EAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAK  255 (379)
Q Consensus       188 ~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~--------~~~~~~~~L~~~I~p~~s~~~v~~-~kiei~L~K  255 (379)
                      +.+.|.+.++|+.+++|+|.+..+.|.|+......        ..|.-.+.|-..|+++..+.++.. .-+.|++.|
T Consensus         7 ~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk   83 (83)
T cd06526           7 EKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK   83 (83)
T ss_pred             eeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence            57889999999999999999999999998753211        247778899999999999999988 788888865

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.40  E-value=0.0057  Score=38.61  Aligned_cols=28  Identities=21%  Similarity=0.160  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973           72 AYWRKATACMKLEEYETAKVALEKGASL   99 (379)
Q Consensus        72 a~~~la~~~~~lg~y~~A~~~~~~a~~l   99 (379)
                      ++.++|.+|..+|+|++|+.+|++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5778899999999999999999986654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.39  E-value=0.037  Score=60.63  Aligned_cols=94  Identities=15%  Similarity=0.012  Sum_probs=78.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHH
Q 016973            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPS------MSKAYW   74 (379)
Q Consensus         6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~-----~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~------~~~a~~   74 (379)
                      ...|..++..|++++|...+.+++...+..     ..++..+|.++...|++++|+..+.+++.+...      ...++.
T Consensus       456 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~  535 (903)
T PRK04841        456 ALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLL  535 (903)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence            346788899999999999999999864443     245677899999999999999999999977432      134667


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHhc
Q 016973           75 RKATACMKLEEYETAKVALEKGASL   99 (379)
Q Consensus        75 ~la~~~~~lg~y~~A~~~~~~a~~l   99 (379)
                      .+|.+++..|+++.|...+++++.+
T Consensus       536 ~la~~~~~~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        536 QQSEILFAQGFLQAAYETQEKAFQL  560 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            8899999999999999999999886

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.33  E-value=0.035  Score=58.68  Aligned_cols=100  Identities=17%  Similarity=0.038  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg   84 (379)
                      ..-.|..+++.|.+++|+.+++..-..-+++-..+-.+-.||..++++++|..+|++++.-+|. -+-++.+-.+|.+-+
T Consensus        46 ~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~  124 (932)
T KOG2053|consen   46 KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREK  124 (932)
T ss_pred             HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHH
Confidence            3457889999999999999988887788888888999999999999999999999999999998 899999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCChH
Q 016973           85 EYETAKVALEKGASLAPGDSR  105 (379)
Q Consensus        85 ~y~~A~~~~~~a~~l~p~~~~  105 (379)
                      .|.+-..+--+..+..|+++-
T Consensus       125 ~yk~qQkaa~~LyK~~pk~~y  145 (932)
T KOG2053|consen  125 SYKKQQKAALQLYKNFPKRAY  145 (932)
T ss_pred             HHHHHHHHHHHHHHhCCcccc
Confidence            998766555555566676653

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.31  E-value=0.033  Score=61.07  Aligned_cols=97  Identities=9%  Similarity=0.041  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------CH
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPS--------MS   70 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~--------~~   70 (379)
                      +...|..+...|++++|+..|.+++......      ...+.++|.+++..|++++|...+.+++.+...        ..
T Consensus       494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~  573 (903)
T PRK04841        494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE  573 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence            4567888899999999999999999763321      346678899999999999999999999987321        22


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 016973           71 KAYWRKATACMKLEEYETAKVALEKGASLAP  101 (379)
Q Consensus        71 ~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p  101 (379)
                      ..+..+|.+++..|++++|...+.+++.+..
T Consensus       574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~  604 (903)
T PRK04841        574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLS  604 (903)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence            3456789999999999999999999988643

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.30  E-value=0.052  Score=57.94  Aligned_cols=91  Identities=13%  Similarity=0.074  Sum_probs=65.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCH
Q 016973            7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY   86 (379)
Q Consensus         7 ~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y   86 (379)
                      .....+.+.|++++|++++++. ...| +...|..+..++...|+++.|...+++++.+.|.+...|..++.+|...|++
T Consensus       467 ~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~  544 (697)
T PLN03081        467 CMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQ  544 (697)
T ss_pred             hHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCH
Confidence            3455666777777777776653 1223 3455666767777788888888888888888888777888888888888888


Q ss_pred             HHHHHHHHHHHhc
Q 016973           87 ETAKVALEKGASL   99 (379)
Q Consensus        87 ~~A~~~~~~a~~l   99 (379)
                      ++|...++...+.
T Consensus       545 ~~A~~v~~~m~~~  557 (697)
T PLN03081        545 AEAAKVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHHHHc
Confidence            8888888766544

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.29  E-value=0.056  Score=48.95  Aligned_cols=93  Identities=18%  Similarity=0.063  Sum_probs=69.8

Q ss_pred             HHHcCCHHHHHHHHHHHHHh----C-CCC--HHHHHHHHHHHHHccCHH-------HHHHHHHHHHHhCC------CCHH
Q 016973           12 AFIDDYFELAYDLYSQAIEI----S-PNS--AELFADRAQASIKLQNFT-------EAVADANRAIELEP------SMSK   71 (379)
Q Consensus        12 ~~~~g~y~~Al~~y~~al~~----~-p~~--~~~~~~ra~~~~~lg~~~-------eAl~~~~~Al~l~p------~~~~   71 (379)
                      +-....+++|+..|..||-.    . +..  +.+++++|-+|..+|+-+       .|+..|.+|+....      +...
T Consensus        87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~  166 (214)
T PF09986_consen   87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT  166 (214)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence            33456789999999888876    2 122  567888899998888844       46666666665542      2367


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCh
Q 016973           72 AYWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (379)
Q Consensus        72 a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~  104 (379)
                      .+|.+|.+++++|++++|+.+|.+++.....+.
T Consensus       167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~  199 (214)
T PF09986_consen  167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK  199 (214)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence            899999999999999999999999998765444

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.26  E-value=0.072  Score=49.17  Aligned_cols=94  Identities=13%  Similarity=0.151  Sum_probs=80.8

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHH-H
Q 016973           14 IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV-A   92 (379)
Q Consensus        14 ~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~-~   92 (379)
                      ..+.+++|.-+|++.-...+..+..+...|.|++.+++|++|...+..|+.-++.+++.+.++-.+-..+|.-.++.. .
T Consensus       185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~  264 (299)
T KOG3081|consen  185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN  264 (299)
T ss_pred             cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence            356689999999998886777789999999999999999999999999999999999999999999999998877665 5


Q ss_pred             HHHHHhcCCCChHHH
Q 016973           93 LEKGASLAPGDSRFT  107 (379)
Q Consensus        93 ~~~a~~l~p~~~~~~  107 (379)
                      +.+....+|+++-..
T Consensus       265 l~QLk~~~p~h~~vk  279 (299)
T KOG3081|consen  265 LSQLKLSHPEHPFVK  279 (299)
T ss_pred             HHHHHhcCCcchHHH
Confidence            566666778776443

>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa)

Probab=96.25  E-value=0.023  Score=43.47  Aligned_cols=72  Identities=8%  Similarity=0.101  Sum_probs=58.9

Q ss_pred             ccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCC---Cc-----eeeeccccccccccCcceEEEe-CcEEEEEEee
Q 016973          185 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG---EE-----AYHFQPRLFGKIIPAKCRYEVL-STKVEIRLAK  255 (379)
Q Consensus       185 Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~---~~-----~~~~~~~L~~~I~p~~s~~~v~-~~kiei~L~K  255 (379)
                      -+++.+.|.+.++|+.++++.|++..+.|+|+.....   +.     .|.-.+.|-..|++++.+-+.. ...+.|+|.|
T Consensus         4 ~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk   83 (84)
T cd06498           4 LEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPR   83 (84)
T ss_pred             eCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeC
Confidence            3577899999999999999999999999999875321   11     2556778999999999999996 8889999877


Q ss_pred             c
Q 016973          256 A  256 (379)
Q Consensus       256 ~  256 (379)
                      .
T Consensus        84 ~   84 (84)
T cd06498          84 K   84 (84)
T ss_pred             C
Confidence            3

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.22  E-value=0.048  Score=54.49  Aligned_cols=54  Identities=17%  Similarity=0.155  Sum_probs=27.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHH
Q 016973            8 KAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANR   61 (379)
Q Consensus         8 ~g~~~~~~g~y~~Al~~y~~al~~~p~--~~~~~~~ra~~~~~lg~~~eAl~~~~~   61 (379)
                      .|.++-+.|+..+|++.|...++.+|.  +..++.++..|++.++.|.++...+.+
T Consensus       265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k  320 (539)
T PF04184_consen  265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK  320 (539)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            444555555555555555555554443  233455555555555555555544444

The molecular function of this protein is uncertain.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.17  E-value=0.051  Score=42.09  Aligned_cols=49  Identities=12%  Similarity=0.161  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 016973           21 AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM   69 (379)
Q Consensus        21 Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~   69 (379)
                      .+..+.+.+..+|.+..+.+.+|.++...|++++|+..+-.+++.++.+
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            4566778888888888888888888888888888888888888887755

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.13  E-value=0.16  Score=56.62  Aligned_cols=89  Identities=11%  Similarity=0.027  Sum_probs=46.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCH
Q 016973            9 AKEAFIDDYFELAYDLYSQAIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIELE-PSMSKAYWRKATACMKLEEY   86 (379)
Q Consensus         9 g~~~~~~g~y~~Al~~y~~al~~~-p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~-p~~~~a~~~la~~~~~lg~y   86 (379)
                      ...+.+.|++++|+++|.+.++.. .-+...|..+..+|.+.|++++|+..|....... ..+...|..+...|.+.|++
T Consensus       656 I~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~  735 (1060)
T PLN03218        656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL  735 (1060)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence            344455555555555555555442 2234455555555555566666655555554332 11344455555555566666


Q ss_pred             HHHHHHHHHHH
Q 016973           87 ETAKVALEKGA   97 (379)
Q Consensus        87 ~~A~~~~~~a~   97 (379)
                      ++|+..|.+..
T Consensus       736 eeAlelf~eM~  746 (1060)
T PLN03218        736 PKALEVLSEMK  746 (1060)
T ss_pred             HHHHHHHHHHH
Confidence            66666555443

>smart00028 TPR Tetratricopeptide repeats

Probab=96.10  E-value=0.0095  Score=34.80  Aligned_cols=31  Identities=29%  Similarity=0.506  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 016973           38 LFADRAQASIKLQNFTEAVADANRAIELEPS   68 (379)
Q Consensus        38 ~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~   68 (379)
                      +++++|.++..+++++.|+..+.+++.++|.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4566666666666666666666666666553

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.06  E-value=0.16  Score=46.78  Aligned_cols=109  Identities=10%  Similarity=0.013  Sum_probs=95.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHH-HH
Q 016973           12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE-TA   89 (379)
Q Consensus        12 ~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg-~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~-~A   89 (379)
                      +++...-+.|+.+-..+|.++|.+...|..|-.|+..++ ++.+-++.+...++-+|.+.++|..+-.+...+|++. .-
T Consensus        53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE  132 (318)
T KOG0530|consen   53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE  132 (318)
T ss_pred             HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence            344566689999999999999999999999999988875 5788899999999999999999999999999999998 88


Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           90 KVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        90 ~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +.+.+.++..+..+-.++.....|-...+..
T Consensus       133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~  163 (318)
T KOG0530|consen  133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDY  163 (318)
T ss_pred             HHHHHHHHhccccchhhhHHHHHHHHHHhhH
Confidence            9999999999998888888888776655554

>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins

Probab=96.04  E-value=0.048  Score=42.17  Aligned_cols=73  Identities=12%  Similarity=0.167  Sum_probs=55.9

Q ss_pred             ccccccC-CeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCC--------------CceeeeccccccccccCcceEEEe
Q 016973          181 HEFYQKP-EEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------------EEAYHFQPRLFGKIIPAKCRYEVL  245 (379)
Q Consensus       181 ~~W~Qt~-~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~--------------~~~~~~~~~L~~~I~p~~s~~~v~  245 (379)
                      ++=++++ +...|.+.++|+.++++.|.+..+.|.|+.....              -..|.-.+.|-..|+.+  +....
T Consensus         3 ~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~~   80 (90)
T cd06470           3 YNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAELE   80 (90)
T ss_pred             eeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEEe
Confidence            4556764 8999999999999999999999999999854211              12366677888888876  56777


Q ss_pred             CcEEEEEEee
Q 016973          246 STKVEIRLAK  255 (379)
Q Consensus       246 ~~kiei~L~K  255 (379)
                      +..+.|+|.+
T Consensus        81 ~GvL~I~l~~   90 (90)
T cd06470          81 NGLLTIDLER   90 (90)
T ss_pred             CCEEEEEEEC
Confidence            7888888763

IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.01  E-value=0.065  Score=53.54  Aligned_cols=90  Identities=19%  Similarity=0.165  Sum_probs=53.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------------------
Q 016973           11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS----------------------   68 (379)
Q Consensus        11 ~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~----------------------   68 (379)
                      .+-+..+.+.-+++-.+||+++|+.+.+|..+|.-.  .....+|...+.+|++....                      
T Consensus       177 ~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rd  254 (539)
T PF04184_consen  177 KAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRD  254 (539)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccc
Confidence            445667777777777777777777777766665421  22344444444444433210                      


Q ss_pred             ---CHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 016973           69 ---MSKAYWRKATACMKLEEYETAKVALEKGASLAPG  102 (379)
Q Consensus        69 ---~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~  102 (379)
                         ..-+-+|+|.|+.++|+.++|+..|+..++..|.
T Consensus       255 t~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~  291 (539)
T PF04184_consen  255 TNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN  291 (539)
T ss_pred             cchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc
Confidence               1234466777777777777777777777766664

The molecular function of this protein is uncertain.

>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20

Probab=96.00  E-value=0.031  Score=42.56  Aligned_cols=71  Identities=14%  Similarity=0.142  Sum_probs=57.2

Q ss_pred             ccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcC---CC-----ceeeeccccccccccCcceEEEe-CcEEEEEEee
Q 016973          185 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GE-----EAYHFQPRLFGKIIPAKCRYEVL-STKVEIRLAK  255 (379)
Q Consensus       185 Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~---~~-----~~~~~~~~L~~~I~p~~s~~~v~-~~kiei~L~K  255 (379)
                      .+++.+.|.+-++|+.+++|.|++..+.|.|+....   .+     ..|.-.+.|-..|++++.+-++. ..-+.|+|.|
T Consensus         4 ~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~PK   83 (83)
T cd06478           4 LDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGPR   83 (83)
T ss_pred             ecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEecC
Confidence            467889999999999999999999999999987432   11     12556778999999999888884 7788888765

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.98  E-value=0.015  Score=36.63  Aligned_cols=28  Identities=11%  Similarity=0.202  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 016973           38 LFADRAQASIKLQNFTEAVADANRAIEL   65 (379)
Q Consensus        38 ~~~~ra~~~~~lg~~~eAl~~~~~Al~l   65 (379)
                      +|.++|.+|.++|+|++|+..|++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3667788888888888888888886544

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.97  E-value=0.13  Score=51.18  Aligned_cols=106  Identities=20%  Similarity=0.236  Sum_probs=53.1

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHH
Q 016973           13 FIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET   88 (379)
Q Consensus        13 ~~~g~y~~Al~~y~~al~~~p~~----~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~   88 (379)
                      +...+.+.+.+.|+.+|.+.|+.    +-+|+-.|...++..++..|.+.+-.|+..+|.+ +.+-..-.+-.++++++.
T Consensus       377 le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDR  455 (677)
T KOG1915|consen  377 LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDR  455 (677)
T ss_pred             HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHH
Confidence            44455555666666666665554    3344444555555555555555555555555532 222222223344555555


Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           89 AKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        89 A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      ....|++.++..|.+-..+...+.++..|+.
T Consensus       456 cRkLYEkfle~~Pe~c~~W~kyaElE~~Lgd  486 (677)
T KOG1915|consen  456 CRKLYEKFLEFSPENCYAWSKYAELETSLGD  486 (677)
T ss_pred             HHHHHHHHHhcChHhhHHHHHHHHHHHHhhh
Confidence            5555555555555555444444444444444

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.96  E-value=0.2  Score=55.89  Aligned_cols=88  Identities=10%  Similarity=0.092  Sum_probs=39.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcc
Q 016973           10 KEAFIDDYFELAYDLYSQAIEI----SPNSAELFADRAQASIKLQNFTEAVADANRAIELE-PSMSKAYWRKATACMKLE   84 (379)
Q Consensus        10 ~~~~~~g~y~~Al~~y~~al~~----~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~-p~~~~a~~~la~~~~~lg   84 (379)
                      ..+.+.|++++|.++|.+....    .|+ ...|..+..+|.+.|++++|++.|..+.+.+ +.+...|..+..+|.+.|
T Consensus       550 ~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G  628 (1060)
T PLN03218        550 SACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG  628 (1060)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Confidence            3444444444555444444331    222 2333444444444555555555554444443 223344444444444455


Q ss_pred             CHHHHHHHHHHHHh
Q 016973           85 EYETAKVALEKGAS   98 (379)
Q Consensus        85 ~y~~A~~~~~~a~~   98 (379)
                      ++++|+..|.+..+
T Consensus       629 ~~deAl~lf~eM~~  642 (1060)
T PLN03218        629 DWDFALSIYDDMKK  642 (1060)
T ss_pred             CHHHHHHHHHHHHH
Confidence            55555554444443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.94  E-value=0.011  Score=53.20  Aligned_cols=61  Identities=25%  Similarity=0.302  Sum_probs=47.0

Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChH
Q 016973           45 ASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR  105 (379)
Q Consensus        45 ~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~  105 (379)
                      ...+.++.+.|.+.|.+|+.+.|.....|||+|......|+++.|...|++.++++|.+..
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            3445577777788888888888888888888888888888888888888888888887654

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.91  E-value=0.076  Score=57.87  Aligned_cols=111  Identities=16%  Similarity=0.148  Sum_probs=89.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc----c---CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 016973            8 KAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKL----Q---NFTEAVADANRAIELEPSMSKAYWRKA   77 (379)
Q Consensus         8 ~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~l----g---~~~eAl~~~~~Al~l~p~~~~a~~~la   77 (379)
                      -.++++..+.|+.|+..|.+.-...|..   .++.++.|.++...    |   .|.+|+.-|++. .-.+.-+.-|+..|
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  559 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKA  559 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHH
Confidence            3467888999999999999999998765   67888888887654    2   477777777663 34466778899999


Q ss_pred             HHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           78 TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        78 ~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      .+|.++|+|++-+.+|.-|++..|+++........+-.+|..
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  601 (932)
T PRK13184        560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHE  601 (932)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence            999999999999999999999999999877666555555444

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.90  E-value=0.05  Score=58.04  Aligned_cols=102  Identities=16%  Similarity=0.063  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C--------------
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIELE-P--------------   67 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~--~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~-p--------------   67 (379)
                      |......|.+.|++++|+.+|.+....  .| +...|..+..++.++|++++|.+.+..+++.. +              
T Consensus       293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~  371 (697)
T PLN03081        293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS  371 (697)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHH
Confidence            344455556666666666666555443  22 22334444444444444444444444444332 1              


Q ss_pred             -----------------CCHHHHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCChHHH
Q 016973           68 -----------------SMSKAYWRKATACMKLEEYETAKVALEKGAS--LAPGDSRFT  107 (379)
Q Consensus        68 -----------------~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~--l~p~~~~~~  107 (379)
                                       .+...|..+...|.+.|+.++|+..|++..+  +.|+...+.
T Consensus       372 k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~  430 (697)
T PLN03081        372 KWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFL  430 (697)
T ss_pred             HCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHH
Confidence                             2334455556666666666666666666544  234444333

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.77  E-value=0.12  Score=49.22  Aligned_cols=101  Identities=11%  Similarity=-0.015  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHH---HHHHH
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL-EPSMSKAYWR---KATAC   80 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l-~p~~~~a~~~---la~~~   80 (379)
                      +...+..++.+|++-+|....++.|...|.+..++..--.+++-+|+.......+++++-. +++.+-.-|.   ++.++
T Consensus       106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL  185 (491)
T KOG2610|consen  106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL  185 (491)
T ss_pred             hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence            3445667888999999999999999999999888777777778889988888888888866 6665443333   45567


Q ss_pred             HhccCHHHHHHHHHHHHhcCCCChH
Q 016973           81 MKLEEYETAKVALEKGASLAPGDSR  105 (379)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~  105 (379)
                      ..+|-|++|.....+++++++.+-=
T Consensus       186 ~E~g~y~dAEk~A~ralqiN~~D~W  210 (491)
T KOG2610|consen  186 EECGIYDDAEKQADRALQINRFDCW  210 (491)
T ss_pred             HHhccchhHHHHHHhhccCCCcchH
Confidence            7889999999999999999987753

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.76  E-value=0.12  Score=46.93  Aligned_cols=97  Identities=25%  Similarity=0.212  Sum_probs=61.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCC------CCHHHHH
Q 016973            8 KAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKL-QNFTEAVADANRAIELEP------SMSKAYW   74 (379)
Q Consensus         8 ~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~l-g~~~eAl~~~~~Al~l~p------~~~~a~~   74 (379)
                      .+..+|+..+..+|+.++++++++..+-      +..+..+|..|..- .+++.||.+|+.|-..-.      .--++++
T Consensus        79 eA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~l  158 (288)
T KOG1586|consen   79 EAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLL  158 (288)
T ss_pred             HHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHH
Confidence            3444556667777777777777774332      22233455555443 677777777777765532      1235666


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcCCCCh
Q 016973           75 RKATACMKLEEYETAKVALEKGASLAPGDS  104 (379)
Q Consensus        75 ~la~~~~~lg~y~~A~~~~~~a~~l~p~~~  104 (379)
                      ..|..-..+++|.+|+..|++..+..-++.
T Consensus       159 KvA~yaa~leqY~~Ai~iyeqva~~s~~n~  188 (288)
T KOG1586|consen  159 KVAQYAAQLEQYSKAIDIYEQVARSSLDNN  188 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            677777778888888888887766655444

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.75  E-value=0.32  Score=44.22  Aligned_cols=114  Identities=20%  Similarity=0.173  Sum_probs=80.3

Q ss_pred             HHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HH
Q 016973            6 EKKAKEAFID-DYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM-------SK   71 (379)
Q Consensus         6 ~~~g~~~~~~-g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~-------~~   71 (379)
                      +..|..|-.. .+++.||.+|+++-+.....      --+++..|...-++++|.+|+..|+......-++       -.
T Consensus       117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kd  196 (288)
T KOG1586|consen  117 IEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKD  196 (288)
T ss_pred             hhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHH
Confidence            4556666665 78999999999998874322      2345666666677899999999998877654332       23


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHh
Q 016973           72 AYWRKATACMKLEEYETAKVALEKGASLAPGDSR--FTNLIKECEERIAE  119 (379)
Q Consensus        72 a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~--~~~~l~~~~~~l~~  119 (379)
                      .++.-|.|++...+.-.+...+++...++|.-..  --..+..+...+..
T Consensus       197 yflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE  246 (288)
T KOG1586|consen  197 YFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEE  246 (288)
T ss_pred             HHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhh
Confidence            5667788888889999999999999999997543  23344444444443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.71  E-value=0.14  Score=44.83  Aligned_cols=97  Identities=14%  Similarity=0.092  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHH----HH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS--MSK----AY   73 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~--~~~----a~   73 (379)
                      ..+...|+-+++.|+++.|+++|.++.......   .+.+++...+.+..+++......+.+|-.+...  +..    ..
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            356788999999999999999999988764332   567777888888889999999998888876432  222    23


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973           74 WRKATACMKLEEYETAKVALEKGASL   99 (379)
Q Consensus        74 ~~la~~~~~lg~y~~A~~~~~~a~~l   99 (379)
                      ...|.++...++|..|...|-.+..-
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccCcC
Confidence            34577788899999998888766533

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.71  E-value=0.11  Score=57.43  Aligned_cols=107  Identities=13%  Similarity=0.024  Sum_probs=86.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcc
Q 016973            7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATACMKLE   84 (379)
Q Consensus         7 ~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~--~~~a~~~la~~~~~lg   84 (379)
                      .....|.+.+.+++|.++|++.+....+....|..+|..+++..+-+.|...+.+|+..-|.  +.+..-..|+..|..|
T Consensus      1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence            34556777888888888888888888777788888888888888888888888888888886  6677777888888888


Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973           85 EYETAKVALEKGASLAPGDSRFTNLIKEC  113 (379)
Q Consensus        85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (379)
                      +.+.+...|+-.+.-+|.-.++|..+...
T Consensus      1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~ 1643 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDM 1643 (1710)
T ss_pred             CchhhHHHHHHHHhhCccchhHHHHHHHH
Confidence            88888888888888888877766555443

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.68  E-value=0.066  Score=49.70  Aligned_cols=75  Identities=16%  Similarity=0.143  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973           39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (379)
Q Consensus        39 ~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (379)
                      ..++=..|...++++.|+.+..+.+.++|.++.-+.-+|.+|.++|.+.-|+..++..++..|+++.+......+
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l  258 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL  258 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            344445566778899999999999999999998889999999999999999999999899999888765444433

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.66  E-value=0.087  Score=48.09  Aligned_cols=96  Identities=21%  Similarity=0.261  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----C--CCCHHH
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIEL----E--PSMSKA   72 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l----~--p~~~~a   72 (379)
                      -..++-.+..+.+.++|+++|++++.+.-..      .+++...+..|.++++|.+|-..+.+-..+    +  ++-.++
T Consensus       113 aleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~  192 (308)
T KOG1585|consen  113 ALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKA  192 (308)
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHH
Confidence            3456666777888888888898888874332      566777778888888888877666554332    2  334555


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 016973           73 YWRKATACMKLEEYETAKVALEKGASLA  100 (379)
Q Consensus        73 ~~~la~~~~~lg~y~~A~~~~~~a~~l~  100 (379)
                      +...-.+|..+.+|..|..+|+.+.++.
T Consensus       193 ~va~ilv~L~~~Dyv~aekc~r~~~qip  220 (308)
T KOG1585|consen  193 YVAAILVYLYAHDYVQAEKCYRDCSQIP  220 (308)
T ss_pred             HHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence            6666666777779999998888876664

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.63  E-value=0.063  Score=51.59  Aligned_cols=95  Identities=16%  Similarity=0.007  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CC
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------AELFADRAQASIKLQNFTEAVADANRAIELE------PS   68 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~----------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~------p~   68 (379)
                      +...|..+-...||++|+-+..+|+++..+-          ...++.++.++..+|.+..|.++++.|.++.      +.
T Consensus       165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~  244 (518)
T KOG1941|consen  165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL  244 (518)
T ss_pred             hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence            4457788888999999999999999883321          4567889999999999999999999998874      34


Q ss_pred             CHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973           69 MSKAYWRKATACMKLEEYETAKVALEKGASL   99 (379)
Q Consensus        69 ~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l   99 (379)
                      ....+.-+|.+|..+|+.+.|..-|+.|...
T Consensus       245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~~  275 (518)
T KOG1941|consen  245 QARCLLCFADIYRSRGDLERAFRRYEQAMGT  275 (518)
T ss_pred             HHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence            5678888999999999999999888888765

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.62  E-value=0.11  Score=38.84  Aligned_cols=64  Identities=17%  Similarity=0.226  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE---LFADRAQASIKLQNFTEAVADANRAIEL   65 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~---~~~~ra~~~~~lg~~~eAl~~~~~Al~l   65 (379)
                      +...++.|..+|...+.++|+..+.++|+..++...   ++-.++.+|...|+|.+++.++..=+.+
T Consensus         6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788999999999999999999999999877654   4455666778889999988877665554

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PRK10743 heat shock protein IbpA; Provisional

Probab=95.56  E-value=0.083  Score=44.31  Aligned_cols=74  Identities=9%  Similarity=0.112  Sum_probs=60.0

Q ss_pred             cccc-ccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcC----CC---------ceeeeccccccccccCcceEEEeC
Q 016973          181 HEFY-QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE---------EAYHFQPRLFGKIIPAKCRYEVLS  246 (379)
Q Consensus       181 ~~W~-Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~----~~---------~~~~~~~~L~~~I~p~~s~~~v~~  246 (379)
                      ++-+ .+++.+.|.+.++|+.+++|.|++..+.|+|+....    ++         ..|.-.+.|-..|++++  -+..+
T Consensus        37 ~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~~~d  114 (137)
T PRK10743         37 YNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--ANLVN  114 (137)
T ss_pred             EEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CEEeC
Confidence            6677 489999999999999999999999999999986421    11         13555778889999984  67788


Q ss_pred             cEEEEEEeec
Q 016973          247 TKVEIRLAKA  256 (379)
Q Consensus       247 ~kiei~L~K~  256 (379)
                      .-+.|+|.|.
T Consensus       115 GVL~I~lPK~  124 (137)
T PRK10743        115 GLLYIDLERV  124 (137)
T ss_pred             CEEEEEEeCC
Confidence            8899999986

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.45  E-value=0.37  Score=46.36  Aligned_cols=119  Identities=18%  Similarity=0.140  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CC---------
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN----SAELFADRAQASIKLQNFTEAVADANRAIEL-EP---------   67 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~----~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l-~p---------   67 (379)
                      +..+...+..+.+.|.++.|...+.++...++.    .+.+.+..|..+...|+..+|+..+...+.. ..         
T Consensus       146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~  225 (352)
T PF02259_consen  146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA  225 (352)
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence            456788899999999999999999999886522    4677888899999999999999999888871 00         


Q ss_pred             ------------------------CCHHHHHHHHHHHHhc------cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973           68 ------------------------SMSKAYWRKATACMKL------EEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (379)
Q Consensus        68 ------------------------~~~~a~~~la~~~~~l------g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l  117 (379)
                                              ..+++++.+|.-...+      +.+++++..|..+..++|+....+...+.....+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL  305 (352)
T ss_pred             HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence                                    1356778888888778      8899999999999999998887666666665555


Q ss_pred             Hhh
Q 016973          118 AEE  120 (379)
Q Consensus       118 ~~~  120 (379)
                      -..
T Consensus       306 ~~~  308 (352)
T PF02259_consen  306 LES  308 (352)
T ss_pred             HHh
Confidence            444

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins

Probab=95.39  E-value=0.083  Score=40.24  Aligned_cols=70  Identities=16%  Similarity=0.127  Sum_probs=55.7

Q ss_pred             cCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcC---CCc-----eeeeccccccccccCcceEEEe-CcEEEEEEee
Q 016973          186 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE-----AYHFQPRLFGKIIPAKCRYEVL-STKVEIRLAK  255 (379)
Q Consensus       186 t~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~---~~~-----~~~~~~~L~~~I~p~~s~~~v~-~~kiei~L~K  255 (379)
                      .++...|.+.++|+.+++++|++..+.|.|+....   .+.     .|.-.+.|-..|++++-+-+.. ...+.|+|-|
T Consensus         5 ~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr   83 (83)
T cd06476           5 EDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR   83 (83)
T ss_pred             cCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence            45678899999999999999999999999987531   111     2555678999999999999996 7788888754

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.39  E-value=0.4  Score=47.56  Aligned_cols=70  Identities=16%  Similarity=0.275  Sum_probs=54.5

Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHHHh
Q 016973           46 SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD----SRFTNLIKECEERIAE  119 (379)
Q Consensus        46 ~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~----~~~~~~l~~~~~~l~~  119 (379)
                      ++..|+|.++.-...=..+++| .+.++..+|.|++..++|.+|..++...   -|++    ..+...+..|++.+..
T Consensus       472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L---P~n~~~~dskvqKAl~lCqKh~~k  545 (549)
T PF07079_consen  472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL---PPNERMRDSKVQKALALCQKHLPK  545 (549)
T ss_pred             HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC---CCchhhHHHHHHHHHHHHHHhhhh
Confidence            4566999999988888889999 9999999999999999999999988654   3332    3355566666665544

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.37  E-value=0.15  Score=39.49  Aligned_cols=65  Identities=17%  Similarity=0.103  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHh
Q 016973           55 AVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD--SRFTNLIKECEERIAE  119 (379)
Q Consensus        55 Al~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~--~~~~~~l~~~~~~l~~  119 (379)
                      .+..+..++..+|.+..+.|.+|.++...|+|++|+..|-.+++.+++.  ......+-.+-..++.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            4667889999999999999999999999999999999999999998765  4555555555555554

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.34  E-value=0.27  Score=48.13  Aligned_cols=79  Identities=15%  Similarity=0.077  Sum_probs=66.8

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------CC---------------CCHHHHHHHH
Q 016973           27 QAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL--------------EP---------------SMSKAYWRKA   77 (379)
Q Consensus        27 ~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l--------------~p---------------~~~~a~~~la   77 (379)
                      ..|..+|-+.+.++.++.++.++|++..|...+++|+-.              +.               ....+.+|..
T Consensus        31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i  110 (360)
T PF04910_consen   31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI  110 (360)
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence            445678999999999999999999999999999888722              11               1356888999


Q ss_pred             HHHHhccCHHHHHHHHHHHHhcCCC-ChH
Q 016973           78 TACMKLEEYETAKVALEKGASLAPG-DSR  105 (379)
Q Consensus        78 ~~~~~lg~y~~A~~~~~~a~~l~p~-~~~  105 (379)
                      ..+.+.|.+..|+++++-.+.++|. |+-
T Consensus       111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~  139 (360)
T PF04910_consen  111 QSLGRRGCWRTALEWCKLLLSLDPDEDPL  139 (360)
T ss_pred             HHHHhcCcHHHHHHHHHHHHhcCCCCCcc
Confidence            9999999999999999999999998 664

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.29  E-value=0.57  Score=42.92  Aligned_cols=102  Identities=22%  Similarity=0.169  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELE-----PSMSK   71 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~-----p~~~~   71 (379)
                      ..+...+..+-...+|+.|-.++.+|+....+|      +-+|-..|..+..+..+.++...|++|..+-     |+-+.
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA  111 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA  111 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence            345555667777899999999999999765544      3345566677777888999999999998773     44444


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCh
Q 016973           72 AYWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (379)
Q Consensus        72 a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~  104 (379)
                      .-+.+|--....-+.++|+..|++++.+--.+.
T Consensus       112 maleKAak~lenv~Pd~AlqlYqralavve~~d  144 (308)
T KOG1585|consen  112 MALEKAAKALENVKPDDALQLYQRALAVVEEDD  144 (308)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc
Confidence            444455555667788999999999888754443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.19  E-value=0.89  Score=44.55  Aligned_cols=108  Identities=16%  Similarity=0.088  Sum_probs=78.1

Q ss_pred             HHHHHHHHH---cCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCCC---
Q 016973            6 EKKAKEAFI---DDYFELAYDLYSQAI-EISPNSAELFADRAQASIKL---------QNFTEAVADANRAIELEPSM---   69 (379)
Q Consensus         6 ~~~g~~~~~---~g~y~~Al~~y~~al-~~~p~~~~~~~~ra~~~~~l---------g~~~eAl~~~~~Al~l~p~~---   69 (379)
                      +..|.++.+   .|+.+.|+..+..++ ...+.+++.+.-.|.+|-.+         ..+++|+..|.++++++|+.   
T Consensus       183 ~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~G  262 (374)
T PF13281_consen  183 FQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSG  262 (374)
T ss_pred             HHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccch
Confidence            456777777   899999999998844 45667788888888887543         34788999999999888641   


Q ss_pred             ------------------------------------------HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHH
Q 016973           70 ------------------------------------------SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT  107 (379)
Q Consensus        70 ------------------------------------------~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~  107 (379)
                                                                .-.+-.++.+..-.|+++.|..++++++++.|..=...
T Consensus       263 IN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~  342 (374)
T PF13281_consen  263 INAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELE  342 (374)
T ss_pred             HHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHH
Confidence                                                      00112245556668889999999999999987655444


Q ss_pred             HHHHHH
Q 016973          108 NLIKEC  113 (379)
Q Consensus       108 ~~l~~~  113 (379)
                      ..+..+
T Consensus       343 St~~ni  348 (374)
T PF13281_consen  343 STLENI  348 (374)
T ss_pred             HHHHHH
Confidence            444444

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.14  E-value=0.12  Score=47.88  Aligned_cols=74  Identities=18%  Similarity=0.177  Sum_probs=66.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973            7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (379)
Q Consensus         7 ~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~   80 (379)
                      +.=..+.+.++++.|+.+-.+.|.++|.++.-+.-||.+|.++|.+.-|+++++..++..|+.+.+-+-++...
T Consensus       186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~  259 (269)
T COG2912         186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL  259 (269)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            34467889999999999999999999999999999999999999999999999999999999888777666443

>PLN03077 Protein ECB2; Provisional

Probab=95.08  E-value=0.25  Score=54.02  Aligned_cols=108  Identities=13%  Similarity=0.072  Sum_probs=80.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Q 016973            7 KKAKEAFIDDYFELAYDLYSQAIEISP--NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (379)
Q Consensus         7 ~~g~~~~~~g~y~~Al~~y~~al~~~p--~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg   84 (379)
                      ..-..+.+.|.+++|+.+|+......+  -+...|..+..+|.+.|++++|.+.++.. .+.| +...|-.+-.+|...|
T Consensus       594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~  671 (857)
T PLN03077        594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITP-DPAVWGALLNACRIHR  671 (857)
T ss_pred             HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcC
Confidence            344567788999999999988874422  23567888888888999999998888764 3444 3566666666777788


Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973           85 EYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (379)
Q Consensus        85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (379)
                      +.+.|....+++++++|++......+..+...
T Consensus       672 ~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~  703 (857)
T PLN03077        672 HVELGELAAQHIFELDPNSVGYYILLCNLYAD  703 (857)
T ss_pred             ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Confidence            88888888888888888888777666655543

>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins

Probab=94.96  E-value=0.11  Score=39.99  Aligned_cols=68  Identities=15%  Similarity=0.202  Sum_probs=52.8

Q ss_pred             cCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcC-----C-C------ceeeeccccccccccCcceEEE-eCcEEEEE
Q 016973          186 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-----G-E------EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIR  252 (379)
Q Consensus       186 t~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~-----~-~------~~~~~~~~L~~~I~p~~s~~~v-~~~kiei~  252 (379)
                      ..+.+.|.+.++|+.+++|.|++..+.|.|+....     + +      ..|.-.+.|-..|+++..+-.+ ...-+.|.
T Consensus         5 ~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~   84 (87)
T cd06481           5 GKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIR   84 (87)
T ss_pred             ccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEE
Confidence            35678999999999999999999999999986421     1 1      2355677899999999988888 55566665


Q ss_pred             E
Q 016973          253 L  253 (379)
Q Consensus       253 L  253 (379)
                      +
T Consensus        85 ~   85 (87)
T cd06481          85 A   85 (87)
T ss_pred             c
Confidence            4

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.

>PRK11597 heat shock chaperone IbpB; Provisional

Probab=94.94  E-value=0.14  Score=43.19  Aligned_cols=74  Identities=9%  Similarity=0.123  Sum_probs=58.8

Q ss_pred             ccccc-cCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcC----CC---------ceeeeccccccccccCcceEEEeC
Q 016973          181 HEFYQ-KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE---------EAYHFQPRLFGKIIPAKCRYEVLS  246 (379)
Q Consensus       181 ~~W~Q-t~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~----~~---------~~~~~~~~L~~~I~p~~s~~~v~~  246 (379)
                      ++=++ +++.+.|++.++|+.+++|.|++..+.|+|+....    ++         ..|.-.+.|-..|+++  +-+..+
T Consensus        35 vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~~n  112 (142)
T PRK11597         35 YNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATFVN  112 (142)
T ss_pred             EEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEEcC
Confidence            55566 46789999999999999999999999999987521    11         1355667788889988  477788


Q ss_pred             cEEEEEEeec
Q 016973          247 TKVEIRLAKA  256 (379)
Q Consensus       247 ~kiei~L~K~  256 (379)
                      .-+.|+|-|.
T Consensus       113 GVL~I~lPK~  122 (142)
T PRK11597        113 GLLHIDLIRN  122 (142)
T ss_pred             CEEEEEEecc
Confidence            8899999986

>PLN03077 Protein ECB2; Provisional

Probab=94.93  E-value=0.27  Score=53.78  Aligned_cols=108  Identities=14%  Similarity=0.127  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIELEP--SMSKAYWRKATA   79 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~--~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p--~~~~a~~~la~~   79 (379)
                      .|......|...|+.++|+.+|++.++.  .|+... |..+-.++.+.|.+++|+..|+.......  -+...|..+..+
T Consensus       556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~  634 (857)
T PLN03077        556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL  634 (857)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            4667778899999999999999998874  565444 44555678899999999999999884432  245788889999


Q ss_pred             HHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973           80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (379)
Q Consensus        80 ~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (379)
                      |.+.|++++|...+++. .+.|+...+...+..|
T Consensus       635 l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac  667 (857)
T PLN03077        635 LGRAGKLTEAYNFINKM-PITPDPAVWGALLNAC  667 (857)
T ss_pred             HHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Confidence            99999999999999875 4667655444444443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.93  E-value=0.75  Score=38.93  Aligned_cols=86  Identities=15%  Similarity=-0.088  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      .++..........+.+++..++...--+.|+.+++-..-|..++..|++.+|+..++....-.+..+-+--.++.|++-+
T Consensus        12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al   91 (153)
T TIGR02561        12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK   91 (153)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence            45666677777999999999999988899999999999999999999999999999999888888888888899999999


Q ss_pred             cCHHHH
Q 016973           84 EEYETA   89 (379)
Q Consensus        84 g~y~~A   89 (379)
                      |+..==
T Consensus        92 ~Dp~Wr   97 (153)
T TIGR02561        92 GDAEWH   97 (153)
T ss_pred             CChHHH
Confidence            997643

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.80  E-value=0.055  Score=48.88  Aligned_cols=60  Identities=27%  Similarity=0.279  Sum_probs=56.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 016973           10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM   69 (379)
Q Consensus        10 ~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~   69 (379)
                      ..+...++.+.|.++|.++|.+.|....-|+++|....+.|+++.|.+.|.+.++++|.+
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            456788999999999999999999999999999999999999999999999999999864

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.80  E-value=0.22  Score=38.71  Aligned_cols=56  Identities=20%  Similarity=0.253  Sum_probs=28.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC----C-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 016973           11 EAFIDDYFELAYDLYSQAIEISPN----S-----AELFADRAQASIKLQNFTEAVADANRAIELE   66 (379)
Q Consensus        11 ~~~~~g~y~~Al~~y~~al~~~p~----~-----~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~   66 (379)
                      ...+.|+|..|++.+.+.+.....    .     ..+++++|.++...|++++|+..++.|+.+.
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            445566666665555555544111    1     2344445555555555555555555555443

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.68  E-value=0.0081  Score=57.06  Aligned_cols=74  Identities=19%  Similarity=0.249  Sum_probs=67.1

Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           47 IKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        47 ~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +..|.++.|+..|..|+.++|.....|-.++.++..+++...|+..|..++.++|+...-..+...++..|+.-
T Consensus       125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~  198 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW  198 (377)
T ss_pred             hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence            34588999999999999999999999999999999999999999999999999999888777777777776664

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.61  E-value=0.21  Score=47.66  Aligned_cols=85  Identities=14%  Similarity=0.005  Sum_probs=44.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHh-CCCCHH---HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCH
Q 016973           11 EAFIDDYFELAYDLYSQAIEI-SPNSAE---LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY   86 (379)
Q Consensus        11 ~~~~~g~y~~Al~~y~~al~~-~p~~~~---~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y   86 (379)
                      .+|-+|+...-...+.+++-. ++.-+.   +.--+|-++...|-|++|...+++|+++++.+.-+...++.++...|++
T Consensus       146 a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~  225 (491)
T KOG2610|consen  146 AHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRH  225 (491)
T ss_pred             HHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchh
Confidence            455555555555555555554 333322   2222444455555666666666666666665555555555555555555


Q ss_pred             HHHHHHHHH
Q 016973           87 ETAKVALEK   95 (379)
Q Consensus        87 ~~A~~~~~~   95 (379)
                      .++.+++.+
T Consensus       226 Keg~eFM~~  234 (491)
T KOG2610|consen  226 KEGKEFMYK  234 (491)
T ss_pred             hhHHHHHHh
Confidence            555555443

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=94.35  E-value=0.49  Score=39.36  Aligned_cols=75  Identities=15%  Similarity=0.127  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHcCC---HHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973            4 DLEKKAKEAFIDDY---FELAYDLYSQAIE-ISPNS-AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (379)
Q Consensus         4 ~l~~~g~~~~~~g~---y~~Al~~y~~al~-~~p~~-~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~   78 (379)
                      ..|+.+.++.+..+   ..+.|.++...+. -+|.. -++++.+|..++++++|+.|+++++..++..|++.++.-..-.
T Consensus        34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~  113 (149)
T KOG3364|consen   34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKET  113 (149)
T ss_pred             HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            45667777776554   4688999999997 44443 5678889999999999999999999999999999887654433

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.28  E-value=0.65  Score=39.86  Aligned_cols=84  Identities=14%  Similarity=0.118  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973           37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (379)
Q Consensus        37 ~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (379)
                      ..+.....+-.+.++.+++...+...-.+.|..+..-+.-|..+...|+|.+|+..|+.+..-.|..+-.+..++.|...
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            45666777777889999999999988899999999999999999999999999999999999999999888888998877


Q ss_pred             HHhh
Q 016973          117 IAEE  120 (379)
Q Consensus       117 l~~~  120 (379)
                      ++..
T Consensus        91 ~~D~   94 (160)
T PF09613_consen   91 LGDP   94 (160)
T ss_pred             cCCh
Confidence            6654

>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins

Probab=94.24  E-value=0.21  Score=38.35  Aligned_cols=66  Identities=18%  Similarity=0.149  Sum_probs=51.2

Q ss_pred             cCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcC------CCc-----eeeeccccccccccCcceEEEeCc-EEEE
Q 016973          186 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP------GEE-----AYHFQPRLFGKIIPAKCRYEVLST-KVEI  251 (379)
Q Consensus       186 t~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~------~~~-----~~~~~~~L~~~I~p~~s~~~v~~~-kiei  251 (379)
                      .++.+.|++-++|+.+++|.|.+..+.|+|+....      +..     .|.-.+.|-..|++++.+-+..+. .+.|
T Consensus         6 ~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i   83 (87)
T cd06482           6 DSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKI   83 (87)
T ss_pred             cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEE
Confidence            35679999999999999999999999999997532      111     244467888889999888888776 5544

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.12  E-value=2.2  Score=40.12  Aligned_cols=100  Identities=13%  Similarity=0.040  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CCCC----------HHHHHHHHHHHHHccCHHH---HHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDD-YFELAYDLYSQAIEI----SPNS----------AELFADRAQASIKLQNFTE---AVADANRAI   63 (379)
Q Consensus         2 A~~l~~~g~~~~~~g-~y~~Al~~y~~al~~----~p~~----------~~~~~~ra~~~~~lg~~~e---Al~~~~~Al   63 (379)
                      ++.+++.|..++..+ +|+.|+..+++++++    ....          ...+..++.+|...+.++.   |+...+.+.
T Consensus        35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~  114 (278)
T PF08631_consen   35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE  114 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            678899999999999 999999999999998    2211          4556778888888877654   444444444


Q ss_pred             HhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 016973           64 ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP  101 (379)
Q Consensus        64 ~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p  101 (379)
                      ...|+.+..++..-.++...++.+.+...+.+.+..-+
T Consensus       115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            45577666664444455558888888888888877654

It is also involved in sporulation [].

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.00  E-value=1  Score=43.21  Aligned_cols=99  Identities=24%  Similarity=0.115  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC--------------------------C-------HHHHHHHHHHHHHc
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEI-SPN--------------------------S-------AELFADRAQASIKL   49 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~-~p~--------------------------~-------~~~~~~ra~~~~~l   49 (379)
                      ..+..+..+...|+..+|+..+...+.. ...                          .       ..+++.+|.....+
T Consensus       186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~  265 (352)
T PF02259_consen  186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL  265 (352)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence            4567888999999999999999988881 110                          1       34455555555556


Q ss_pred             ------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCH-----------------HHHHHHHHHHHhcCCC
Q 016973           50 ------QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY-----------------ETAKVALEKGASLAPG  102 (379)
Q Consensus        50 ------g~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y-----------------~~A~~~~~~a~~l~p~  102 (379)
                            +.+++++..|..|+.++|...++|+.+|..+..+=+.                 ..|+.+|-+|+.+.+.
T Consensus       266 ~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  266 YSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             ccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence                  7788899999999999999999999999988765222                 3488888888888877

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=93.80  E-value=0.15  Score=48.07  Aligned_cols=86  Identities=13%  Similarity=0.106  Sum_probs=73.7

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHhccCHHHHHHHHHHHHhcCCCC
Q 016973           25 YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR-KATACMKLEEYETAKVALEKGASLAPGD  103 (379)
Q Consensus        25 y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~-la~~~~~lg~y~~A~~~~~~a~~l~p~~  103 (379)
                      |.++-...++++.+|...+.-..+.|.|.+-...|..+++.+|.+...|.. .+.-++..++.+.+.+.|.++++++|.+
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            445555677888888888888888899999999999999999999999987 5667888999999999999999999999


Q ss_pred             hHHHHHH
Q 016973          104 SRFTNLI  110 (379)
Q Consensus       104 ~~~~~~l  110 (379)
                      +..+...
T Consensus       176 p~iw~ey  182 (435)
T COG5191         176 PRIWIEY  182 (435)
T ss_pred             chHHHHH
Confidence            9765443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.79  E-value=0.15  Score=32.39  Aligned_cols=29  Identities=28%  Similarity=0.354  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI   31 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~   31 (379)
                      ..+.+.|..++..|+|++|+.++.+++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            34444555555555555555555555443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.79  E-value=0.16  Score=32.32  Aligned_cols=28  Identities=21%  Similarity=0.234  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 016973           38 LFADRAQASIKLQNFTEAVADANRAIEL   65 (379)
Q Consensus        38 ~~~~ra~~~~~lg~~~eAl~~~~~Al~l   65 (379)
                      .+.++|.+|..+|++++|+..+.+++.+
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            3455555555555555555555555544

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.73  E-value=0.64  Score=36.06  Aligned_cols=57  Identities=23%  Similarity=0.325  Sum_probs=47.5

Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 016973           45 ASIKLQNFTEAVADANRAIELEPS---------MSKAYWRKATACMKLEEYETAKVALEKGASLAP  101 (379)
Q Consensus        45 ~~~~lg~~~eAl~~~~~Al~l~p~---------~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p  101 (379)
                      -..+.|+|.+|++.+.+.+.....         ...+++.+|.++...|++++|+..+++++++..
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            345789999999988888866431         246789999999999999999999999999864

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=93.40  E-value=0.38  Score=49.11  Aligned_cols=75  Identities=19%  Similarity=0.117  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA   79 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~   79 (379)
                      +.+.|+.+...|-..+|-.++.++|.++...+..++-+|.+|+.+++.+.|++.|..|+.++|+++.+.-.+-.+
T Consensus       645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i  719 (886)
T KOG4507|consen  645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI  719 (886)
T ss_pred             HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence            467899999999999999999999999988899999999999999999999999999999999988776555443

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=93.33  E-value=1.1  Score=45.78  Aligned_cols=102  Identities=19%  Similarity=0.061  Sum_probs=83.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH-HHHhCCCCHHHHHHH------HHHHH
Q 016973            9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR-AIELEPSMSKAYWRK------ATACM   81 (379)
Q Consensus         9 g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~-Al~l~p~~~~a~~~l------a~~~~   81 (379)
                      ...+...++...|...+..++..+|.+..++.++|.+....|....++..+.. +....|.+..+...+      |..+.
T Consensus        74 si~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  153 (620)
T COG3914          74 SILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLK  153 (620)
T ss_pred             HhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHH
Confidence            34455567777888889999999999999999999999888877666665555 888899888777666      88888


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHH
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLI  110 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l  110 (379)
                      .+|+..++..++.++..+.|.++.....+
T Consensus       154 ~l~~~~~~~~~l~~~~d~~p~~~~~~~~~  182 (620)
T COG3914         154 LLGRTAEAELALERAVDLLPKYPRVLGAL  182 (620)
T ss_pred             HhccHHHHHHHHHHHHHhhhhhhhhHhHH
Confidence            89999999999999999999887654443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=93.26  E-value=1.3  Score=49.55  Aligned_cols=98  Identities=14%  Similarity=0.066  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~--~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      .|...|..++++.+-+.|..++.+||..-|.  +..+....|..-++.|+-+.+...|+-.+.-.|.-...|.-+...-.
T Consensus      1566 vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ei 1645 (1710)
T KOG1070|consen 1566 VWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEI 1645 (1710)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHH
Confidence            5778899999999999999999999999998  78999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCC
Q 016973           82 KLEEYETAKVALEKGASLAP  101 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p  101 (379)
                      ..|+-+-+...|++++.+.=
T Consensus      1646 k~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1646 KHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred             ccCCHHHHHHHHHHHHhcCC
Confidence            99999999999999988753

>PF08190 PIH1: pre-RNA processing PIH1/Nop17

Probab=93.22  E-value=0.4  Score=46.08  Aligned_cols=65  Identities=25%  Similarity=0.354  Sum_probs=54.7

Q ss_pred             cCCeEEEEEEeCCC-CCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeC--cEEEEEE
Q 016973          186 KPEEVVVTVFAKGI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS--TKVEIRL  253 (379)
Q Consensus       186 t~~~V~i~i~~k~~-~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~--~kiei~L  253 (379)
                      ....+.|.|.++++ ...++.+++.++.|.|.+...   .|.|.|.|-.+|+++.++-+...  ..+.|+|
T Consensus       259 ~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~---~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtl  326 (328)
T PF08190_consen  259 SPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKP---KYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTL  326 (328)
T ss_pred             CCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCC---ceEEEccCCCcccCCCceEEEccCCCEEEEEE
Confidence            46789999999998 679999999999999987632   69999999999999998877655  4677776

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=93.22  E-value=3.3  Score=38.80  Aligned_cols=97  Identities=15%  Similarity=-0.041  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcc-------CHHHHHHHHHHHHHhCCCCH
Q 016973            3 TDLEKKAKEAFI----DDYFELAYDLYSQAIEISPNS-AELFADRAQASIKLQ-------NFTEAVADANRAIELEPSMS   70 (379)
Q Consensus         3 ~~l~~~g~~~~~----~g~y~~Al~~y~~al~~~p~~-~~~~~~ra~~~~~lg-------~~~eAl~~~~~Al~l~p~~~   70 (379)
                      ..++..|..++.    ..++.+|+.+|.+|....... ....+.++.+|..-.       +...|+..|.+|....  +.
T Consensus       110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~  187 (292)
T COG0790         110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NP  187 (292)
T ss_pred             HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CH
Confidence            356667777776    559999999999999985544 345778888876631       2347888898888777  78


Q ss_pred             HHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCC
Q 016973           71 KAYWRKATACMK----LEEYETAKVALEKGASLAP  101 (379)
Q Consensus        71 ~a~~~la~~~~~----lg~y~~A~~~~~~a~~l~p  101 (379)
                      .+.+++|.+|..    ..++.+|..+|.++.+...
T Consensus       188 ~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~  222 (292)
T COG0790         188 DAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD  222 (292)
T ss_pred             HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence            999999988865    4488999999999998877

>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins

Probab=93.01  E-value=0.65  Score=35.31  Aligned_cols=68  Identities=6%  Similarity=-0.033  Sum_probs=50.7

Q ss_pred             ccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcC----CCc----eeeeccccccccccCcceEEEe-CcEEEEE
Q 016973          185 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GEE----AYHFQPRLFGKIIPAKCRYEVL-STKVEIR  252 (379)
Q Consensus       185 Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~----~~~----~~~~~~~L~~~I~p~~s~~~v~-~~kiei~  252 (379)
                      .+++...|.+.++|+.+++|+|++..+.|+|+....    .+.    .|.-.+.|-..|++++.+-+.. ..-+.|.
T Consensus         4 e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~   80 (83)
T cd06477           4 EGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVE   80 (83)
T ss_pred             cCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEE
Confidence            456788999999999999999999999999997531    111    2444567888899988877763 4444443

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.00  E-value=1.6  Score=45.28  Aligned_cols=92  Identities=16%  Similarity=0.017  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 016973            5 LEKKAKEAFIDD-----YFELAYDLYSQAIEISPNSAELFADRAQASIKLQ---NFTEAVADANRAIELEPSMSKAYWRK   76 (379)
Q Consensus         5 l~~~g~~~~~~g-----~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg---~~~eAl~~~~~Al~l~p~~~~a~~~l   76 (379)
                      +...|.+|++..     ++..|+.+|.++.....  +.+.+.+|.|+..-.   ++..|..+|..|....  +..+++++
T Consensus       291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~l  366 (552)
T KOG1550|consen  291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRL  366 (552)
T ss_pred             ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHH
Confidence            456778888743     78899999999988754  566788888987765   5788999999887665  68999999


Q ss_pred             HHHHHh----ccCHHHHHHHHHHHHhcC
Q 016973           77 ATACMK----LEEYETAKVALEKGASLA  100 (379)
Q Consensus        77 a~~~~~----lg~y~~A~~~~~~a~~l~  100 (379)
                      |.||..    .-+...|..+|.++.+.+
T Consensus       367 a~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  367 ALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             HHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            998864    347889999999999887

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=92.96  E-value=0.38  Score=40.52  Aligned_cols=48  Identities=19%  Similarity=0.239  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ   50 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg   50 (379)
                      +.++.++..++..|+|.-|+++.+.++..+|++..+...++.+|.++|
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg  118 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG  118 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            345555666666666666666666666666666666666666555544

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=92.73  E-value=2.4  Score=43.98  Aligned_cols=117  Identities=21%  Similarity=0.149  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN------------------SAELFADRAQASIKLQNFTEAVADANRAI   63 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~------------------~~~~~~~ra~~~~~lg~~~eAl~~~~~Al   63 (379)
                      |..|..-|..-++..+++.|+.+..+|+..-.+                  +..+|...+.....+|.++.....|++.+
T Consensus       425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii  504 (835)
T KOG2047|consen  425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII  504 (835)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            456667777777777888888877777665211                  12334445555555677777777777777


Q ss_pred             HhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 016973           64 ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA  118 (379)
Q Consensus        64 ~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~  118 (379)
                      .+.--.+..-.+.|..+.....+++|...|++++.|-+=-...-.|..-+..-++
T Consensus       505 dLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~  559 (835)
T KOG2047|consen  505 DLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK  559 (835)
T ss_pred             HHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence            7766666666666666666666666766666666665443334444444444333

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.52  E-value=0.54  Score=48.44  Aligned_cols=73  Identities=12%  Similarity=0.130  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHH
Q 016973           37 ELFADRAQASIKLQNFTEAVADANRAIELEP------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL  109 (379)
Q Consensus        37 ~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p------~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~  109 (379)
                      .++-+-|.-+++..+|..+++.|...+..-|      .+.+.+..++.||..+.+.+.|.++++.|-+.+|.++-.+..
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~  433 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL  433 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence            3456678888999999999999999997755      357888999999999999999999999999999988754433

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=92.41  E-value=1.5  Score=39.75  Aligned_cols=77  Identities=18%  Similarity=0.005  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 016973            3 TDLEKKAKEAFIDDY-------FELAYDLYSQAIEISPN------SAELFADRAQASIKLQNFTEAVADANRAIELEPSM   69 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~-------y~~Al~~y~~al~~~p~------~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~   69 (379)
                      ..+...|-.+-..|+       +..|+..|.+++.....      ...+++.+|.+++++|++++|++.|.+++......
T Consensus       119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s  198 (214)
T PF09986_consen  119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS  198 (214)
T ss_pred             HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence            344555555555666       56777777777776433      15678889999999999999999999999775433


Q ss_pred             H-HHHHHHHHH
Q 016973           70 S-KAYWRKATA   79 (379)
Q Consensus        70 ~-~a~~~la~~   79 (379)
                      . ..+..+|.-
T Consensus       199 ~~~~l~~~AR~  209 (214)
T PF09986_consen  199 KEPKLKDMARD  209 (214)
T ss_pred             CcHHHHHHHHH
Confidence            3 455555543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=92.33  E-value=0.97  Score=48.01  Aligned_cols=96  Identities=15%  Similarity=0.076  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQA----------IEISPNS----------AELFADRAQASIKLQNFTEAVADANRAI   63 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~a----------l~~~p~~----------~~~~~~ra~~~~~lg~~~eAl~~~~~Al   63 (379)
                      .+++.|..+-..++...|+++|.++          |..+|..          ..+|..-|.-+...|+.+.|+..|+.|-
T Consensus       860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~  939 (1416)
T KOG3617|consen  860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK  939 (1416)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence            5677788888899999999998764          3334543          3445556777778899999999998876


Q ss_pred             HhC---------------------CCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973           64 ELE---------------------PSMSKAYWRKATACMKLEEYETAKVALEKGASL   99 (379)
Q Consensus        64 ~l~---------------------p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l   99 (379)
                      ...                     ..+..|.|.+|..|...|++.+|+.+|.+|..+
T Consensus       940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            442                     246778999999999999999999999988654

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.27  E-value=2  Score=44.66  Aligned_cols=105  Identities=13%  Similarity=0.001  Sum_probs=78.9

Q ss_pred             HHHHHHHHHH-----cCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHHhCC
Q 016973            5 LEKKAKEAFI-----DDYFELAYDLYSQAIE-------ISPNSAELFADRAQASIKLQ-----NFTEAVADANRAIELEP   67 (379)
Q Consensus         5 l~~~g~~~~~-----~g~y~~Al~~y~~al~-------~~p~~~~~~~~ra~~~~~lg-----~~~eAl~~~~~Al~l~p   67 (379)
                      ....|.+++.     ..|.+.|+.+|..++.       ..  ++.+.+.+|.||.+..     ++..|+..+.+|..+. 
T Consensus       247 ~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-  323 (552)
T KOG1550|consen  247 QYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-  323 (552)
T ss_pred             HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-
Confidence            3445555544     4789999999999988       32  4557888999998853     6788999999998876 


Q ss_pred             CCHHHHHHHHHHHHhcc---CHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 016973           68 SMSKAYWRKATACMKLE---EYETAKVALEKGASLAPGDSRFTNLIKECEE  115 (379)
Q Consensus        68 ~~~~a~~~la~~~~~lg---~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  115 (379)
                       ++.+.+++|.++..-.   ++..|..+|..|....  +..+..+++.|..
T Consensus       324 -~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~  371 (552)
T KOG1550|consen  324 -NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYE  371 (552)
T ss_pred             -CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHH
Confidence             5788999999997765   6789999999887553  3455566666644

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=92.10  E-value=3  Score=40.15  Aligned_cols=84  Identities=13%  Similarity=0.122  Sum_probs=69.1

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHH
Q 016973           23 DLYSQAIEISPNSAELFADRAQASIKLQN------------FTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK   90 (379)
Q Consensus        23 ~~y~~al~~~p~~~~~~~~ra~~~~~lg~------------~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~   90 (379)
                      .-|++.+..+|++..+|+.+....-.+-.            .+..+..|++|++.+|.+...++.+=.++..+..-+...
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            45888899999999999888876655532            456788899999999998888888888888888888888


Q ss_pred             HHHHHHHhcCCCChHH
Q 016973           91 VALEKGASLAPGDSRF  106 (379)
Q Consensus        91 ~~~~~a~~l~p~~~~~  106 (379)
                      .-+++++..+|++..+
T Consensus        86 ~~we~~l~~~~~~~~L  101 (321)
T PF08424_consen   86 KKWEELLFKNPGSPEL  101 (321)
T ss_pred             HHHHHHHHHCCCChHH
Confidence            8999999999987654

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=92.01  E-value=2.5  Score=43.81  Aligned_cols=93  Identities=18%  Similarity=0.173  Sum_probs=67.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhc
Q 016973            9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP-----SMSKAYWRKATACMKL   83 (379)
Q Consensus         9 g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p-----~~~~a~~~la~~~~~l   83 (379)
                      ++..-.-|-++.....|++.|.+.=-.+....|.|..+....-|++|.+.|++.+.+.+     +....|+.....-+.-
T Consensus       484 ~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg  563 (835)
T KOG2047|consen  484 ADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG  563 (835)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence            44444556677777778888887767777778888887777778888888888887764     2445566666666666


Q ss_pred             cCHHHHHHHHHHHHhcCC
Q 016973           84 EEYETAKVALEKGASLAP  101 (379)
Q Consensus        84 g~y~~A~~~~~~a~~l~p  101 (379)
                      -..+.|...|++|+...|
T Consensus       564 ~klEraRdLFEqaL~~Cp  581 (835)
T KOG2047|consen  564 TKLERARDLFEQALDGCP  581 (835)
T ss_pred             CCHHHHHHHHHHHHhcCC
Confidence            677888888888888777

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.83  E-value=0.26  Score=31.54  Aligned_cols=29  Identities=21%  Similarity=0.232  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973           71 KAYWRKATACMKLEEYETAKVALEKGASL   99 (379)
Q Consensus        71 ~a~~~la~~~~~lg~y~~A~~~~~~a~~l   99 (379)
                      .+|.++|.+-...++|++|+..|++|+.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            46777888888888888888888887765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=91.59  E-value=1  Score=44.80  Aligned_cols=58  Identities=14%  Similarity=0.163  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRA   62 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~A   62 (379)
                      .+...|.-+|..|+|.++.-+-.-..++.| ++.+|..+|.|++..++|++|..++...
T Consensus       464 n~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  464 NFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            456678889999999999999888999999 8999999999999999999999988653

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=91.59  E-value=1.6  Score=43.65  Aligned_cols=95  Identities=14%  Similarity=0.053  Sum_probs=76.2

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHH
Q 016973           10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA   89 (379)
Q Consensus        10 ~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A   89 (379)
                      ......|+.-.|-+.+..+|+..|..+.....++.++..+|.|+.|++++.-+-.+-..-..+...+-..++.+|+++.|
T Consensus       297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a  376 (831)
T PRK15180        297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA  376 (831)
T ss_pred             HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence            45677899999999999999999999999999999999999999999998877766555556666666778899999999


Q ss_pred             HHHHHHHHhcCCCCh
Q 016973           90 KVALEKGASLAPGDS  104 (379)
Q Consensus        90 ~~~~~~a~~l~p~~~  104 (379)
                      .....-.+.-.-.++
T Consensus       377 ~s~a~~~l~~eie~~  391 (831)
T PRK15180        377 LSTAEMMLSNEIEDE  391 (831)
T ss_pred             HHHHHHHhccccCCh
Confidence            876655544333333

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.50  E-value=3.5  Score=36.59  Aligned_cols=59  Identities=19%  Similarity=0.164  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 016973           38 LFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKG   96 (379)
Q Consensus        38 ~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~---~~~a~~~la~~~~~lg~y~~A~~~~~~a   96 (379)
                      ..+.+|..+...+++++|+..+..++..-.+   -.-+-+|+|.+++.+|++++|+..+...
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~  152 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTI  152 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence            3456788888899999999999988755432   2567899999999999999999887653

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=91.46  E-value=1.9  Score=42.21  Aligned_cols=99  Identities=13%  Similarity=0.099  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CCHHHHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN-SAE-LFADRAQASIKLQNFTEAVADANRAIELEP-----SMSKAYWRK   76 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~-~~~-~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p-----~~~~a~~~l   76 (379)
                      +++.....+.++|-+..|++...-.+.++|. ++. +++.+-...++.++|+=-+..++.......     ..+..-|.+
T Consensus       105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~  184 (360)
T PF04910_consen  105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI  184 (360)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence            4667778899999999999999999999998 653 455555556677888777777766544211     245678899


Q ss_pred             HHHHHhccCH---------------HHHHHHHHHHHhcCCC
Q 016973           77 ATACMKLEEY---------------ETAKVALEKGASLAPG  102 (379)
Q Consensus        77 a~~~~~lg~y---------------~~A~~~~~~a~~l~p~  102 (379)
                      +.+++.+++-               +.|...+++|+...|.
T Consensus       185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence            9999999999               8999999999988774

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=91.40  E-value=1.9  Score=40.03  Aligned_cols=90  Identities=9%  Similarity=0.077  Sum_probs=78.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHH
Q 016973           16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFT-EAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALE   94 (379)
Q Consensus        16 g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~-eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~   94 (379)
                      .+..+-++.+++.++.+|.|...|..|-.+...+|+.. .-+..+..++..+..+..+|-.+-=++...+.|+.-+.+..
T Consensus        92 ~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~  171 (318)
T KOG0530|consen   92 SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYAD  171 (318)
T ss_pred             HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence            34667788999999999999999999999999999988 88999999999999999999999999988899999988888


Q ss_pred             HHHhcCCCChH
Q 016973           95 KGASLAPGDSR  105 (379)
Q Consensus        95 ~a~~l~p~~~~  105 (379)
                      +.++.+--|..
T Consensus       172 ~Lle~Di~NNS  182 (318)
T KOG0530|consen  172 ELLEEDIRNNS  182 (318)
T ss_pred             HHHHHhhhccc
Confidence            88887654443

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=91.30  E-value=3.8  Score=33.43  Aligned_cols=80  Identities=15%  Similarity=0.120  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---
Q 016973           37 ELFADRAQASIKL--QNFTEAVADANRAIELEPS------------MSKAYWRKATACMKLEEYETAKVALEKGASL---   99 (379)
Q Consensus        37 ~~~~~ra~~~~~l--g~~~eAl~~~~~Al~l~p~------------~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l---   99 (379)
                      .+|..++....++  |.|++|..-|.+|..+...            ++-+|--|+.++..+|+|++++..-.+++..   
T Consensus         8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR   87 (144)
T PF12968_consen    8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR   87 (144)
T ss_dssp             HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence            3455555554444  7899999999999988643            3456777888999999999988877777654   


Q ss_pred             --CCCChHHHHHHHHHHHH
Q 016973          100 --APGDSRFTNLIKECEER  116 (379)
Q Consensus       100 --~p~~~~~~~~l~~~~~~  116 (379)
                        .-+...-+.|+..+-.+
T Consensus        88 RGEL~qdeGklWIaaVfsr  106 (144)
T PF12968_consen   88 RGELHQDEGKLWIAAVFSR  106 (144)
T ss_dssp             H--TTSTHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHHHHH
Confidence              22345567787766443

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.21  E-value=3.2  Score=39.07  Aligned_cols=64  Identities=22%  Similarity=0.177  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973           36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL   99 (379)
Q Consensus        36 ~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l   99 (379)
                      ..++..++..+...++++.++..+.+.+.++|.+-.+|.++-.+|+..|+...|+..|.+...+
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            4567778888888899999999999999999999999999999999999999999999988764

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=91.17  E-value=4.8  Score=39.51  Aligned_cols=97  Identities=11%  Similarity=-0.047  Sum_probs=71.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHH-HhCCCCHHHHHHHHH
Q 016973            7 KKAKEAFIDDYFELAYDLYSQAIEI----SPNSAELFADRAQASIK---LQNFTEAVADANRAI-ELEPSMSKAYWRKAT   78 (379)
Q Consensus         7 ~~g~~~~~~g~y~~Al~~y~~al~~----~p~~~~~~~~ra~~~~~---lg~~~eAl~~~~~Al-~l~p~~~~a~~~la~   78 (379)
                      +.=..|-...+|+.=+.+.+..-.+    -++.+...+.+|.++.+   .|+.++|++.+..++ ...+.+++.+..+|.
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            3334566667777777776655444    33456667788888888   899999999999854 445678899999998


Q ss_pred             HHHh---------ccCHHHHHHHHHHHHhcCCCC
Q 016973           79 ACMK---------LEEYETAKVALEKGASLAPGD  103 (379)
Q Consensus        79 ~~~~---------lg~y~~A~~~~~~a~~l~p~~  103 (379)
                      +|..         ...+++|+.+|.++.+++|+.
T Consensus       226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~  259 (374)
T PF13281_consen  226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY  259 (374)
T ss_pred             HHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence            8854         234789999999999999754

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.88  E-value=2.7  Score=35.58  Aligned_cols=82  Identities=13%  Similarity=0.071  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 016973           39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA  118 (379)
Q Consensus        39 ~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~  118 (379)
                      +.....+....++++++...+...--+.|+.+.....-|..+...|+|.+|+..|+....-.+..+-.+..++.|...++
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~   92 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG   92 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence            44444555568899999998888888999999999999999999999999999999998888888888888888877766


Q ss_pred             hh
Q 016973          119 EE  120 (379)
Q Consensus       119 ~~  120 (379)
                      ..
T Consensus        93 Dp   94 (153)
T TIGR02561        93 DA   94 (153)
T ss_pred             Ch
Confidence            64

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=90.78  E-value=3.1  Score=40.76  Aligned_cols=91  Identities=19%  Similarity=0.214  Sum_probs=70.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRA--QASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra--~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      .-.+...+-.|+|+.|.+.|+-.+. +|.- ..+-.||  .....+|.++-|+.+..+|....|..+-++.-.-...+..
T Consensus       124 lLeAQaal~eG~~~~Ar~kfeAMl~-dPEt-RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~  201 (531)
T COG3898         124 LLEAQAALLEGDYEDARKKFEAMLD-DPET-RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAA  201 (531)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHhc-ChHH-HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhc
Confidence            3457788899999999999976554 4442 2222333  3345679999999999999999999998888888889999


Q ss_pred             cCHHHHHHHHHHHHh
Q 016973           84 EEYETAKVALEKGAS   98 (379)
Q Consensus        84 g~y~~A~~~~~~a~~   98 (379)
                      |+++.|+........
T Consensus       202 gdWd~AlkLvd~~~~  216 (531)
T COG3898         202 GDWDGALKLVDAQRA  216 (531)
T ss_pred             CChHHHHHHHHHHHH
Confidence            999999998875544

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=90.45  E-value=0.8  Score=28.90  Aligned_cols=20  Identities=15%  Similarity=0.109  Sum_probs=9.3

Q ss_pred             HHHHHHHHHhccCHHHHHHH
Q 016973           73 YWRKATACMKLEEYETAKVA   92 (379)
Q Consensus        73 ~~~la~~~~~lg~y~~A~~~   92 (379)
                      ++.+|-.++..|+|++|+..
T Consensus         4 ~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    4 LYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHH
Confidence            44444444555555555544

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=90.40  E-value=1.2  Score=41.30  Aligned_cols=59  Identities=15%  Similarity=0.010  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973           55 AVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (379)
Q Consensus        55 Al~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (379)
                      |+.+|.+|+.+.|.++..|..+|.++...|+.=.|+.+|-+++...--.+.+...+..+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~l   59 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKL   59 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            45666777777777777777777777667777777776666665443334444444333

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis []

Probab=90.34  E-value=1.8  Score=37.70  Aligned_cols=71  Identities=20%  Similarity=0.247  Sum_probs=54.9

Q ss_pred             ccCC-eEEEEEEeCCCCCCc-eEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecCC
Q 016973          185 QKPE-EVVVTVFAKGIPAKN-VTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP  258 (379)
Q Consensus       185 Qt~~-~V~i~i~~k~~~~~~-v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~  258 (379)
                      +.++ .+.|.--++|+..++ +.|.+..+...|.+...+  .|.-.|.|-.++ ++..+.++.+.-+||.|.+.+.
T Consensus        98 e~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~~--~~~krv~L~~~~-~e~~~~t~nNgILEIri~~~~~  170 (177)
T PF05455_consen   98 ERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVGE--KYLKRVALPWPD-PEITSATFNNGILEIRIRRTEE  170 (177)
T ss_pred             ecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecCC--ceEeeEecCCCc-cceeeEEEeCceEEEEEeecCC
Confidence            4455 688888999998888 899998776666665332  366678888884 7877899999999999999764

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=90.32  E-value=4.8  Score=39.57  Aligned_cols=122  Identities=8%  Similarity=0.005  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNS-AELFADRAQASIKLQNFTEAVADANRAIEL----EPSMSKAY   73 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~-----~p~~-~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l----~p~~~~a~   73 (379)
                      .++-....+-..++...-...+...+..     +... +.+...+=.+|+..+.|+.|-....++.--    +...+..+
T Consensus       171 ~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~  250 (493)
T KOG2581|consen  171 LYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYL  250 (493)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHH
Confidence            3444455555556654444444433332     1111 344555667788888899988877776511    22457888


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHhhhcccC
Q 016973           74 WRKATACMKLEEYETAKVALEKGASLAPGDSR--FTNLIKECEERIAEETGELQ  125 (379)
Q Consensus        74 ~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~--~~~~l~~~~~~l~~~~~~~~  125 (379)
                      |.+|.+..-.++|..|..+|-+|++..|++..  +.+...++.--+.-...++|
T Consensus       251 yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiP  304 (493)
T KOG2581|consen  251 YYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIP  304 (493)
T ss_pred             HHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCc
Confidence            99999999999999999999999999998543  33333333333344444444

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=90.19  E-value=0.39  Score=27.71  Aligned_cols=24  Identities=21%  Similarity=0.141  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHH
Q 016973           71 KAYWRKATACMKLEEYETAKVALE   94 (379)
Q Consensus        71 ~a~~~la~~~~~lg~y~~A~~~~~   94 (379)
                      .+++.+|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            355666666666666666666554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=89.81  E-value=4.1  Score=40.11  Aligned_cols=105  Identities=9%  Similarity=0.010  Sum_probs=81.4

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhccC---H
Q 016973           13 FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN--FTEAVADANRAIELEPSMSKAYWRKATAC-MKLEE---Y   86 (379)
Q Consensus        13 ~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~--~~eAl~~~~~Al~l~p~~~~a~~~la~~~-~~lg~---y   86 (379)
                      .+..-+++-+.+...+|..+|.+..+|+.|..++.+.+.  +..-++.+.++++++|.+..+|-.+-.+. .....   .
T Consensus        86 ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~  165 (421)
T KOG0529|consen   86 EKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLE  165 (421)
T ss_pred             HHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccc
Confidence            344466778888999999999999999999999988764  68889999999999999888775444443 33333   5


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973           87 ETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (379)
Q Consensus        87 ~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l  117 (379)
                      .+-+.+..+++.-++.|-.++.....+...+
T Consensus       166 ~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l  196 (421)
T KOG0529|consen  166 KEELEFTTKLINDNFSNYSAWHYRSLLLSTL  196 (421)
T ss_pred             hhHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence            6677788888888888888877776664433

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.80  E-value=0.66  Score=29.68  Aligned_cols=28  Identities=25%  Similarity=0.504  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 016973           38 LFADRAQASIKLQNFTEAVADANRAIEL   65 (379)
Q Consensus        38 ~~~~ra~~~~~lg~~~eAl~~~~~Al~l   65 (379)
                      .|..+|.+-+..++|.+|+.+|.+++.+
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3445555555555555555555555544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.70  E-value=7.2  Score=40.04  Aligned_cols=94  Identities=18%  Similarity=0.087  Sum_probs=70.0

Q ss_pred             cCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CC----------
Q 016973           15 DDYFELAYDLYSQAIEI------------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL-----EP----------   67 (379)
Q Consensus        15 ~g~y~~Al~~y~~al~~------------~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l-----~p----------   67 (379)
                      ...|++|...|.-|...            +|-+..-++..|.+....|+.+-|.....++|-.     +|          
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            45677888877777665            3445777888999999999988777777776622     22          


Q ss_pred             ---------CCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-ChHHHH
Q 016973           68 ---------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPG-DSRFTN  108 (379)
Q Consensus        68 ---------~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~-~~~~~~  108 (379)
                               .+..++||.-..+.+.|++..|.++++-.+.++|. |+-...
T Consensus       331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l  381 (665)
T KOG2422|consen  331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGIL  381 (665)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHH
Confidence                     13556677777788899999999999999999998 665433

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=89.43  E-value=1.3  Score=27.88  Aligned_cols=21  Identities=14%  Similarity=0.045  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHccCHHHHHHH
Q 016973           38 LFADRAQASIKLQNFTEAVAD   58 (379)
Q Consensus        38 ~~~~ra~~~~~lg~~~eAl~~   58 (379)
                      .++.+|..++..|++++|+..
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHH
Confidence            344455555555555555555

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.43  E-value=1.3  Score=43.83  Aligned_cols=98  Identities=21%  Similarity=0.157  Sum_probs=65.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHccCH----------HHHHHHH
Q 016973            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEI-----------SPNSAELFADRAQASIKLQNF----------TEAVADA   59 (379)
Q Consensus         1 ~A~~l~~~g~~~~~~g~y~~Al~~y~~al~~-----------~p~~~~~~~~ra~~~~~lg~~----------~eAl~~~   59 (379)
                      |+--+...|..++....|.+|+.++-.|-+.           -.+.+.+-+..-.||+.+.+.          ..|.+.|
T Consensus       162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf  241 (568)
T KOG2561|consen  162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF  241 (568)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence            4456788999999999999999886555443           334455555677788888653          2333333


Q ss_pred             HHHHH--------h-CCCC------HHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 016973           60 NRAIE--------L-EPSM------SKAYWRKATACMKLEEYETAKVALEKGAS   98 (379)
Q Consensus        60 ~~Al~--------l-~p~~------~~a~~~la~~~~~lg~y~~A~~~~~~a~~   98 (379)
                      .++.-        + .+..      -..++.-|+..|+.|+-++|.++|+.+..
T Consensus       242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~  295 (568)
T KOG2561|consen  242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA  295 (568)
T ss_pred             hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            33321        1 1222      23445569999999999999999998765

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=89.42  E-value=8.4  Score=39.67  Aligned_cols=113  Identities=15%  Similarity=0.034  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE-PSMSKAYWRKATACMKL   83 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~-p~~~~a~~~la~~~~~l   83 (379)
                      |..-...-...|++....-+|++++---....++|.+.+.-....|+..-|-..+.++.++. +..+..++.-+......
T Consensus       300 w~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~  379 (577)
T KOG1258|consen  300 WRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESN  379 (577)
T ss_pred             HHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhh
Confidence            44445566789999999999999999888889999999999999999999998888888875 67788888889999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973           84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (379)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l  117 (379)
                      |++..|...|+++..-.|+...+-........++
T Consensus       380 ~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~  413 (577)
T KOG1258|consen  380 GNFDDAKVILQRIESEYPGLVEVVLRKINWERRK  413 (577)
T ss_pred             ccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHh
Confidence            9999999999999988888766443333333333

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=89.24  E-value=7  Score=38.59  Aligned_cols=62  Identities=15%  Similarity=0.159  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHH--HccCHHHHHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA--ELFADRAQASI--KLQNFTEAVADANRAIE   64 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~--~~~~~ra~~~~--~lg~~~eAl~~~~~Al~   64 (379)
                      .....++..+|..++|..|...|..++..-|.+.  ..+..++.+|.  ..-+|.+|...++..+.
T Consensus       132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~  197 (379)
T PF09670_consen  132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK  197 (379)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            3456788999999999999999999998633333  35555555543  45678889888887664

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=89.22  E-value=3.5  Score=41.12  Aligned_cols=102  Identities=22%  Similarity=0.256  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------HHHH--------HHHHHHH-HHccCH-HHHHHHHHHHHHh
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS--------AELF--------ADRAQAS-IKLQNF-TEAVADANRAIEL   65 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~--------~~~~--------~~ra~~~-~~lg~~-~eAl~~~~~Al~l   65 (379)
                      ..++.|..++..|+|.+|+..|..+|..-|-.        .++.        |-+|.-. ...... ....++..+.+++
T Consensus       206 ~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lEL  285 (422)
T PF06957_consen  206 ERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLEL  285 (422)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHH
Confidence            34668999999999999999999999873321        1111        1122111 111111 1122223333333


Q ss_pred             ---------CCCCHHHHHHHHHH-HHhccCHHHHHHHHHHHHhcCCCChH
Q 016973           66 ---------EPSMSKAYWRKATA-CMKLEEYETAKVALEKGASLAPGDSR  105 (379)
Q Consensus        66 ---------~p~~~~a~~~la~~-~~~lg~y~~A~~~~~~a~~l~p~~~~  105 (379)
                               .|.+...-+|.|+. .|+.++|..|..+.++.+++.|....
T Consensus       286 AAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~  335 (422)
T PF06957_consen  286 AAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV  335 (422)
T ss_dssp             HHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence                     23333344455554 37899999999999999999997654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=89.17  E-value=4.8  Score=41.35  Aligned_cols=97  Identities=18%  Similarity=0.088  Sum_probs=78.8

Q ss_pred             HcCCHH-HHHHHHHHHHHhCCCCHHHHHH--HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHH
Q 016973           14 IDDYFE-LAYDLYSQAIEISPNSAELFAD--RAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK   90 (379)
Q Consensus        14 ~~g~y~-~Al~~y~~al~~~p~~~~~~~~--ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~   90 (379)
                      ..+..+ .|+..|...+.+++.++.++..  ++..+..++....+...+..++..+|.++.++..+|.++...|..-.+.
T Consensus        42 ~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~  121 (620)
T COG3914          42 NAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLAL  121 (620)
T ss_pred             cccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHH
Confidence            334444 4777788888888998877544  4888888899989999999999999999999999999998888877777


Q ss_pred             HHHHH-HHhcCCCChHHHHHH
Q 016973           91 VALEK-GASLAPGDSRFTNLI  110 (379)
Q Consensus        91 ~~~~~-a~~l~p~~~~~~~~l  110 (379)
                      ..+.+ +....|++..+...+
T Consensus       122 ~~~~~~a~~~~~~~~~~~~~~  142 (620)
T COG3914         122 ADISEIAEWLSPDNAEFLGHL  142 (620)
T ss_pred             HHHHHHHHhcCcchHHHHhhH
Confidence            66665 888999988877766

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=88.93  E-value=8.5  Score=36.12  Aligned_cols=96  Identities=22%  Similarity=0.232  Sum_probs=71.0

Q ss_pred             HHHcCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh----CC---C-------
Q 016973           12 AFIDDYFELAYDLYSQAIEIS----PNS----AELFADRAQASIKLQ-NFTEAVADANRAIEL----EP---S-------   68 (379)
Q Consensus        12 ~~~~g~y~~Al~~y~~al~~~----p~~----~~~~~~ra~~~~~lg-~~~eAl~~~~~Al~l----~p---~-------   68 (379)
                      +.+.|+++.|..+|.++-...    |+.    ...+++.|...+..+ ++++|...+++|+.+    ..   .       
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            567899999999999987764    222    456788888888899 999999999999988    22   1       


Q ss_pred             CHHHHHHHHHHHHhccCHHH---HHHHHHHHHhcCCCChHHH
Q 016973           69 MSKAYWRKATACMKLEEYET---AKVALEKGASLAPGDSRFT  107 (379)
Q Consensus        69 ~~~a~~~la~~~~~lg~y~~---A~~~~~~a~~l~p~~~~~~  107 (379)
                      ...++..++.+|...+.++.   |...++.+..-.|+.+...
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~  124 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF  124 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence            24567778889988887764   4444445555567666544

It is also involved in sporulation [].

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=88.87  E-value=3.1  Score=33.40  Aligned_cols=69  Identities=13%  Similarity=0.064  Sum_probs=55.1

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhccC-----------HHHHHHHHHHHHhcCCCChHHH
Q 016973           42 RAQASIKLQNFTEAVADANRAIELEPSMS---KAYWRKATACMKLEE-----------YETAKVALEKGASLAPGDSRFT  107 (379)
Q Consensus        42 ra~~~~~lg~~~eAl~~~~~Al~l~p~~~---~a~~~la~~~~~lg~-----------y~~A~~~~~~a~~l~p~~~~~~  107 (379)
                      +|.-++..|++-+|++..+..+..+....   ..+..-|.+++.+..           .-.|+++|.++..+.|......
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            57778899999999999999999987655   667777888877654           4568999999999999875544


Q ss_pred             HHH
Q 016973          108 NLI  110 (379)
Q Consensus       108 ~~l  110 (379)
                      ..+
T Consensus        82 ~~l   84 (111)
T PF04781_consen   82 FEL   84 (111)
T ss_pred             HHH
Confidence            433

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=88.72  E-value=0.33  Score=46.63  Aligned_cols=80  Identities=19%  Similarity=0.074  Sum_probs=67.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCH
Q 016973            7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY   86 (379)
Q Consensus         7 ~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y   86 (379)
                      +.+.+.+..+.|..|+.....+++.++....++++|+..+..+.++++|++++..+....|.+....-.+...-...++|
T Consensus       280 n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~  359 (372)
T KOG0546|consen  280 NLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY  359 (372)
T ss_pred             chHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence            35667788889999999999999988889999999999999999999999999999999999887766665554444444

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=88.67  E-value=2.8  Score=39.47  Aligned_cols=63  Identities=13%  Similarity=0.099  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL   65 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l   65 (379)
                      ..+...+..+...|+++.++..+++.+..+|.+-.+|..+-..|++.|+...|+..|...-.+
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            356677888999999999999999999999999999999999999999999999998877654

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=88.66  E-value=15  Score=38.77  Aligned_cols=108  Identities=20%  Similarity=0.121  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CH
Q 016973            2 ATDLEKKAKEAF-IDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPS----MS   70 (379)
Q Consensus         2 A~~l~~~g~~~~-~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~----~~   70 (379)
                      |...++.|..++ ...+++.|..++.+++.+...+      ..+.+-++.++.+.+... |+..++++++....    .+
T Consensus        59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w  137 (608)
T PF10345_consen   59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW  137 (608)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence            345677888887 7899999999999998886432      233445678888877777 99999999988655    44


Q ss_pred             HHHHHHHHHH--HhccCHHHHHHHHHHHHhcC--CCChHHHHHH
Q 016973           71 KAYWRKATAC--MKLEEYETAKVALEKGASLA--PGDSRFTNLI  110 (379)
Q Consensus        71 ~a~~~la~~~--~~lg~y~~A~~~~~~a~~l~--p~~~~~~~~l  110 (379)
                      ...|++-.+.  ...+++..|+..++.+..+.  .+++......
T Consensus       138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~  181 (608)
T PF10345_consen  138 YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA  181 (608)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence            4555554332  22379999999999998876  4555544333

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=88.47  E-value=5.5  Score=36.88  Aligned_cols=62  Identities=18%  Similarity=0.118  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973           21 AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus        21 Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      |+.+|.+|+.+.|.+...|..+|..+...|+.-.|+-+|-+++....-++.|.-++...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999997665567777777777766

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=88.43  E-value=2.3  Score=42.20  Aligned_cols=97  Identities=11%  Similarity=0.104  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEI---------SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR   75 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~---------~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~   75 (379)
                      +....+.+.-.|||..|++.++.. ++         -+.+...++..|-||+.+++|.+|++.|..++..-......+..
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~  203 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQ  203 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            345567788899999999987542 22         22346778999999999999999999999887443222211222


Q ss_pred             HHHHH-HhccCHHHHHHHHHHHHhcCCC
Q 016973           76 KATAC-MKLEEYETAKVALEKGASLAPG  102 (379)
Q Consensus        76 la~~~-~~lg~y~~A~~~~~~a~~l~p~  102 (379)
                      +.--+ .-.+..++....+.-|+.+.|.
T Consensus       204 ~~~q~d~i~K~~eqMyaLlAic~~l~p~  231 (404)
T PF10255_consen  204 RSYQYDQINKKNEQMYALLAICLSLCPQ  231 (404)
T ss_pred             ccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence            22212 2245566777778888888885

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=88.35  E-value=22  Score=33.21  Aligned_cols=82  Identities=17%  Similarity=0.077  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc---------
Q 016973           18 FELAYDLYSQAIEISPNSAELFADRAQASIKL----QNFTEAVADANRAIELEPSMSKAYWRKATACMKLE---------   84 (379)
Q Consensus        18 y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~l----g~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg---------   84 (379)
                      ...|+..|.++....  +..+.+++|.+|..-    .++.+|...|.+|.....  ..++++++ +++..|         
T Consensus       171 ~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~  245 (292)
T COG0790         171 DKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFL  245 (292)
T ss_pred             HHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhc
Confidence            347999999998876  678889999888663    489999999999999887  89999999 777666         


Q ss_pred             ------CHHHHHHHHHHHHhcCCCCh
Q 016973           85 ------EYETAKVALEKGASLAPGDS  104 (379)
Q Consensus        85 ------~y~~A~~~~~~a~~l~p~~~  104 (379)
                            +...|...+..+....+...
T Consensus       246 ~~~~~~~~~~a~~~~~~~~~~~~~~~  271 (292)
T COG0790         246 TAAKEEDKKQALEWLQKACELGFDNA  271 (292)
T ss_pred             ccccCCCHHHHHHHHHHHHHcCChhH
Confidence                  77888888888777665443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=88.18  E-value=7.8  Score=37.26  Aligned_cols=82  Identities=11%  Similarity=0.071  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---HhccCHHHHHHHHH
Q 016973           18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC---MKLEEYETAKVALE   94 (379)
Q Consensus        18 y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~---~~lg~y~~A~~~~~   94 (379)
                      .+.-+.+|++||+.+|.+..++..+-.+..++..-+...+-+++++..+|.++..|..+-...   +..-.+......|.
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~  126 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE  126 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            456788899999999999999999888888999999999999999999999887776544332   22334667777777


Q ss_pred             HHHhc
Q 016973           95 KGASL   99 (379)
Q Consensus        95 ~a~~l   99 (379)
                      +|++.
T Consensus       127 ~~l~~  131 (321)
T PF08424_consen  127 KCLRA  131 (321)
T ss_pred             HHHHH
Confidence            66653

>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21

Probab=88.14  E-value=3.1  Score=32.20  Aligned_cols=64  Identities=14%  Similarity=0.076  Sum_probs=47.9

Q ss_pred             eEEEEEEeCCCCCCceEEEEeecEEEEEEEcCC-----C---ceeeeccccccccccCcceEEEe-CcEEEEE
Q 016973          189 EVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG-----E---EAYHFQPRLFGKIIPAKCRYEVL-STKVEIR  252 (379)
Q Consensus       189 ~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~-----~---~~~~~~~~L~~~I~p~~s~~~v~-~~kiei~  252 (379)
                      .-.|.|-+.|..++++.|++..+.|.|+.....     |   ..|.-.+.|-..|+++..+-.+. ...+.|.
T Consensus        16 ~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Ie   88 (91)
T cd06480          16 PWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIE   88 (91)
T ss_pred             cEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEE
Confidence            345778899999999999999999999875321     1   13555678889999998888887 4455554

6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.01  E-value=2.1  Score=31.83  Aligned_cols=30  Identities=30%  Similarity=0.220  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI   31 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~   31 (379)
                      |..+..+|..+-..|+|.+|+.+|+++++.
T Consensus         6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~   35 (75)
T cd02682           6 ARKYAINAVKAEKEGNAEDAITNYKKAIEV   35 (75)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            556677777777788888777777776654

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=87.88  E-value=14  Score=36.37  Aligned_cols=93  Identities=18%  Similarity=0.120  Sum_probs=68.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973           11 EAFIDDYFELAYDLYSQAIEISPNS--------AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus        11 ~~~~~g~y~~Al~~y~~al~~~p~~--------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      .....|+++.||++.+......-..        ..++..++..+.. -+...|..+...++++.|+...+-.--+.+|++
T Consensus       197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~  275 (531)
T COG3898         197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVVAARALFR  275 (531)
T ss_pred             HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHHHHHHHHh
Confidence            4567888888888887766542111        1222222222221 357788899999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCCh
Q 016973           83 LEEYETAKVALEKGASLAPGDS  104 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~  104 (379)
                      .|+..++-..++.+-+..|+-.
T Consensus       276 d~~~rKg~~ilE~aWK~ePHP~  297 (531)
T COG3898         276 DGNLRKGSKILETAWKAEPHPD  297 (531)
T ss_pred             ccchhhhhhHHHHHHhcCCChH
Confidence            9999999999999999988643

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=87.75  E-value=1  Score=41.04  Aligned_cols=108  Identities=19%  Similarity=0.131  Sum_probs=67.0

Q ss_pred             HHHcCCHHHHHHHHHHHHHhC---CCC---------HHHHHHHHHHHHHccC-HHHHH-HHHHHHHHh--CCCC--HHHH
Q 016973           12 AFIDDYFELAYDLYSQAIEIS---PNS---------AELFADRAQASIKLQN-FTEAV-ADANRAIEL--EPSM--SKAY   73 (379)
Q Consensus        12 ~~~~g~y~~Al~~y~~al~~~---p~~---------~~~~~~ra~~~~~lg~-~~eAl-~~~~~Al~l--~p~~--~~a~   73 (379)
                      +|..|+|+.|+++..-||+.+   |.+         ++-...-|...+..|+ ++-+. ..+.....-  -|+.  ++.|
T Consensus        93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~  172 (230)
T PHA02537         93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY  172 (230)
T ss_pred             eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence            467899999999999999984   322         2223334444445554 22221 112222110  1333  3344


Q ss_pred             HHHHHHHH---------hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           74 WRKATACM---------KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        74 ~~la~~~~---------~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      -..|..+.         ..++...|+.+|++|+.++|+ ..++..+.++..+|+..
T Consensus       173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr~~  227 (230)
T PHA02537        173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLKAL  227 (230)
T ss_pred             HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHhhc
Confidence            44566563         456888999999999999975 55778888888888754

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.65  E-value=19  Score=31.63  Aligned_cols=99  Identities=11%  Similarity=-0.005  Sum_probs=48.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHH
Q 016973            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAI-ELEPSMSKAYWRKATAC   80 (379)
Q Consensus         6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~----~~~~~~ra~~~~~lg~~~eAl~~~~~Al-~l~p~~~~a~~~la~~~   80 (379)
                      ++.|......|+-+.|+..|+++-...+--    -.+.++-|.++...|.|+.-..-.+..- .-+|--..+.--||.+-
T Consensus        98 mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa  177 (221)
T COG4649          98 MRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAA  177 (221)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHH
Confidence            344444555555555555555544332211    1223333333444444444322221110 00122233455578888


Q ss_pred             HhccCHHHHHHHHHHHHhcCCCChH
Q 016973           81 MKLEEYETAKVALEKGASLAPGDSR  105 (379)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~  105 (379)
                      ++.|+|..|...|.+... +-..+.
T Consensus       178 ~kagd~a~A~~~F~qia~-Da~apr  201 (221)
T COG4649         178 YKAGDFAKAKSWFVQIAN-DAQAPR  201 (221)
T ss_pred             HhccchHHHHHHHHHHHc-cccCcH
Confidence            889999999998887765 444443

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=87.64  E-value=12  Score=36.85  Aligned_cols=110  Identities=14%  Similarity=0.113  Sum_probs=83.7

Q ss_pred             HHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------------cCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 016973           10 KEAFIDDYFE-LAYDLYSQAIEISPNSAELFADRAQASIKL------------QNFTEAVADANRAIELEPSMSKAYWRK   76 (379)
Q Consensus        10 ~~~~~~g~y~-~Al~~y~~al~~~p~~~~~~~~ra~~~~~l------------g~~~eAl~~~~~Al~l~p~~~~a~~~l   76 (379)
                      ...-+.|.|+ +++.+=.+.+..+|....+|..|=.++...            .-+++-+.....|++.+|...-+|+.+
T Consensus        36 ~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR  115 (421)
T KOG0529|consen   36 QKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHR  115 (421)
T ss_pred             HHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHH
Confidence            3444566664 677777888888998877776655554332            246677888889999999999999999


Q ss_pred             HHHHHhccC--HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           77 ATACMKLEE--YETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        77 a~~~~~lg~--y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      .-++.+.+.  +..-+..+.++++.+|.+-..+....-+......
T Consensus       116 ~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~  160 (421)
T KOG0529|consen  116 KWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER  160 (421)
T ss_pred             HHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc
Confidence            999987765  5788889999999999998877776666554444

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=87.39  E-value=4.7  Score=44.37  Aligned_cols=89  Identities=13%  Similarity=0.080  Sum_probs=64.3

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc-----CHHHHHH
Q 016973           17 YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE-----EYETAKV   91 (379)
Q Consensus        17 ~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg-----~y~~A~~   91 (379)
                      .+.+|+..|++... .|..+.=|+..|.+|..+|+|++-++++..|++.-|+.+..-+.+-.+.+++.     +...|+.
T Consensus       534 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  612 (932)
T PRK13184        534 DFTQALSEFSYLHG-GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALV  612 (932)
T ss_pred             HHHHHHHHHHHhcC-CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677777765433 34556678999999999999999999999999999887665444444444432     2345777


Q ss_pred             HHHHHHhcCCCChHH
Q 016973           92 ALEKGASLAPGDSRF  106 (379)
Q Consensus        92 ~~~~a~~l~p~~~~~  106 (379)
                      ++--++...|.....
T Consensus       613 ~~~~~~~~~~~~~~~  627 (932)
T PRK13184        613 FMLLALWIAPEKISS  627 (932)
T ss_pred             HHHHHHHhCcccccc
Confidence            777888888876544

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=86.92  E-value=6.4  Score=34.39  Aligned_cols=66  Identities=18%  Similarity=0.178  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 016973           36 AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLAP  101 (379)
Q Consensus        36 ~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~---~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p  101 (379)
                      -.++..+|..|.+.|++++|++.|.++......   ....++++-.+.+..+++.....++.++..+-.
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~  104 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE  104 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence            367889999999999999999999998877643   456788888899999999999999999887643

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=86.84  E-value=4.9  Score=40.60  Aligned_cols=62  Identities=15%  Similarity=0.216  Sum_probs=53.3

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHH
Q 016973           13 FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSKAYW   74 (379)
Q Consensus        13 ~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~-~~eAl~~~~~Al~l~p~~~~a~~   74 (379)
                      -+.+.|.+--..|.++|..+|+++++|..-|.-.+..+. .+.|...+.++++.+|+.+..|.
T Consensus       116 kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~  178 (568)
T KOG2396|consen  116 KKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK  178 (568)
T ss_pred             HHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence            334448899999999999999999999998888887776 99999999999999999876553

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=85.81  E-value=2.1  Score=47.66  Aligned_cols=99  Identities=23%  Similarity=0.206  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL--------   65 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~--------~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l--------   65 (379)
                      +..+...+..+.+.+++++|+..-.++.-+        .|+....|.+++...+..++...|+..+.++..+        
T Consensus       973 ~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~ 1052 (1236)
T KOG1839|consen  973 ASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGED 1052 (1236)
T ss_pred             HHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCC
Confidence            567788899999999999999986666554        3444678899999999999999999999999877        


Q ss_pred             CCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 016973           66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLA  100 (379)
Q Consensus        66 ~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~  100 (379)
                      +|.-.....+++.++..+++++.|+.+++.|+...
T Consensus      1053 hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1053 HPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             CCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            45666677888999999999999999999998853

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=85.80  E-value=5.4  Score=36.14  Aligned_cols=59  Identities=22%  Similarity=0.164  Sum_probs=31.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 016973           10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS   68 (379)
Q Consensus        10 ~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~   68 (379)
                      ..+++.+..++||.....-++..|.+......+-..|.-.|+|++|+..++-+-++.|+
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~   67 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ   67 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence            34555555555555555555555555544444444455555555555555555555554

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.26  E-value=16  Score=36.97  Aligned_cols=116  Identities=15%  Similarity=0.036  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCC---C---
Q 016973            2 ATDLEKKAKEAFIDD--YFELAYDLYSQAIEISPNS---AELFADRAQASIK-LQNFTEAVADANRAIELEPS---M---   69 (379)
Q Consensus         2 A~~l~~~g~~~~~~g--~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~-lg~~~eAl~~~~~Al~l~p~---~---   69 (379)
                      +..+...|..+-..|  +...+|++++..+...+..   +.....+|..++. .++++.|...+++|..+...   +   
T Consensus         7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv   86 (629)
T KOG2300|consen    7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV   86 (629)
T ss_pred             HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence            456677777777788  7889999999888876654   3344556655544 58899999999999988643   3   


Q ss_pred             -HHHHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           70 -SKAYWRKATACMKLE-EYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        70 -~~a~~~la~~~~~lg-~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                       ..++-.++.+|.+.. .+..|...+++++++..+.+   .|--++...|.+.
T Consensus        87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p---~wsckllfQLaql  136 (629)
T KOG2300|consen   87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP---YWSCKLLFQLAQL  136 (629)
T ss_pred             hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc---hhhHHHHHHHHHH
Confidence             235566788887777 78899999999999988877   4444544444443

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=84.98  E-value=1.4  Score=49.00  Aligned_cols=98  Identities=26%  Similarity=0.363  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHH------HHHHHHH-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------
Q 016973            2 ATDLEKKAKEAFIDDYFELAYD------LYSQAIE-ISPNSAELFADRAQASIKLQNFTEAVADANRAIELE--------   66 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~------~y~~al~-~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~--------   66 (379)
                      |..+.+.|......|.+.+|.+      +++.... +.|.....|..++..+.+++++++|+....+|.-+.        
T Consensus       932 a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen  932 AKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred             hhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence            4567888999999999998888      4443222 366778889999999999999999999999888663        


Q ss_pred             CCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973           67 PSMSKAYWRKATACMKLEEYETAKVALEKGASL   99 (379)
Q Consensus        67 p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l   99 (379)
                      |+....|-.++...+..+....|+..+.++..+
T Consensus      1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred             HHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence            456788999999999999999999988888776

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=84.75  E-value=6.6  Score=36.22  Aligned_cols=76  Identities=17%  Similarity=0.193  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhccCHH
Q 016973           20 LAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEP------SMSKAYWRKATACMKLEEYE   87 (379)
Q Consensus        20 ~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p------~~~~a~~~la~~~~~lg~y~   87 (379)
                      ..|+++.+|+......      ..+...+|.-|+.+|+|++|+..|+.+...-.      -....+..+..|++++|+.+
T Consensus       156 ~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~  235 (247)
T PF11817_consen  156 LIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVE  235 (247)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHH
Confidence            4456666666653321      33455677777777777777777777754422      13456666777777777777


Q ss_pred             HHHHHHHH
Q 016973           88 TAKVALEK   95 (379)
Q Consensus        88 ~A~~~~~~   95 (379)
                      ..+...-+
T Consensus       236 ~~l~~~le  243 (247)
T PF11817_consen  236 DYLTTSLE  243 (247)
T ss_pred             HHHHHHHH
Confidence            76655433

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=84.64  E-value=1.7  Score=41.22  Aligned_cols=70  Identities=9%  Similarity=0.172  Sum_probs=56.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 016973            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFAD-RAQASIKLQNFTEAVADANRAIELEPSMSKAYWR   75 (379)
Q Consensus         6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~-ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~   75 (379)
                      ..-++-..+.|-|.+--..|.+++..+|.++++|.. -+.-+.-.+++..|...+.++++++|..+..|+.
T Consensus       111 ~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e  181 (435)
T COG5191         111 SQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE  181 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence            334455566778888889999999999999998876 4445667799999999999999999988776643

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=84.63  E-value=1.2  Score=25.53  Aligned_cols=23  Identities=17%  Similarity=-0.100  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHH
Q 016973           38 LFADRAQASIKLQNFTEAVADAN   60 (379)
Q Consensus        38 ~~~~ra~~~~~lg~~~eAl~~~~   60 (379)
                      +++.+|.++..+|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45566666666666666665543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.50  E-value=2.5  Score=31.58  Aligned_cols=30  Identities=27%  Similarity=0.350  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI   31 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~   31 (379)
                      |..+..+|..+-..|+|++|+.+|.++|..
T Consensus         6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~   35 (77)
T cd02683           6 AKEVLKRAVELDQEGRFQEALVCYQEGIDL   35 (77)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            456778888888888888888888887765

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=84.31  E-value=7.3  Score=38.36  Aligned_cols=94  Identities=16%  Similarity=0.124  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----C----CCHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN---SAELFADRAQASIKLQNFTEAVADANRAIELE----P----SMSKA   72 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~---~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~----p----~~~~a   72 (379)
                      .+-..|.-|+..|+++.|+++|.++-..-.+   -...+.+.-.+-+-+|+|..-+....+|...-    .    -.++.
T Consensus       152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl  231 (466)
T KOG0686|consen  152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL  231 (466)
T ss_pred             HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence            3556788899999999999999996555222   24566677777777899988888877777651    1    13456


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHH
Q 016973           73 YWRKATACMKLEEYETAKVALEKGA   97 (379)
Q Consensus        73 ~~~la~~~~~lg~y~~A~~~~~~a~   97 (379)
                      ...-|.+.+.+++|..|..+|-.+.
T Consensus       232 ~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  232 KCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            7778889999999999998886553

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.21  E-value=21  Score=36.15  Aligned_cols=91  Identities=13%  Similarity=0.115  Sum_probs=68.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCC----------CHH
Q 016973            6 EKKAKEAFIDDYFELAYDLYSQAIEISPN-S--AELFADRAQASIKLQNFTEAVADANRAIE-LEPS----------MSK   71 (379)
Q Consensus         6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~-~--~~~~~~ra~~~~~lg~~~eAl~~~~~Al~-l~p~----------~~~   71 (379)
                      +-.|.-...-+.|+.|...|..|++.-.. +  +.+-.++|..|...++-+.    +.+++. +.|.          ...
T Consensus       371 ~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed----~y~~ld~i~p~nt~s~ssq~l~a~  446 (629)
T KOG2300|consen  371 MLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAED----LYKALDLIGPLNTNSLSSQRLEAS  446 (629)
T ss_pred             HHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHH----HHHHHHhcCCCCCCcchHHHHHHH
Confidence            44677777788899999999999987433 3  3445678999998776553    333332 3443          256


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 016973           72 AYWRKATACMKLEEYETAKVALEKGASLA  100 (379)
Q Consensus        72 a~~~la~~~~~lg~y~~A~~~~~~a~~l~  100 (379)
                      ++|..|...|..+++.+|...+++.++..
T Consensus       447 ~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  447 ILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            78889999999999999999999999987

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=84.06  E-value=2.8  Score=42.07  Aligned_cols=95  Identities=17%  Similarity=0.124  Sum_probs=74.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHH
Q 016973            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE   87 (379)
Q Consensus         8 ~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~   87 (379)
                      .+...-..|+|+.|+..+.-+-..-..-..+...|-..+.++|++++|+..+...+.-.-..+++..--|.....+|-++
T Consensus       329 ~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d  408 (831)
T PRK15180        329 RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFD  408 (831)
T ss_pred             HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHH
Confidence            46677788999999999876655544444455556667889999999999888877666667777777777788899999


Q ss_pred             HHHHHHHHHHhcCCC
Q 016973           88 TAKVALEKGASLAPG  102 (379)
Q Consensus        88 ~A~~~~~~a~~l~p~  102 (379)
                      +|.-++++.+.++|.
T Consensus       409 ~~~~~wk~~~~~~~~  423 (831)
T PRK15180        409 KSYHYWKRVLLLNPE  423 (831)
T ss_pred             HHHHHHHHHhccCCh
Confidence            999999999998874

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=83.98  E-value=1.7  Score=43.16  Aligned_cols=60  Identities=13%  Similarity=0.165  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973           39 FADRAQASIKLQNFTEAVADANRAIELE---------PSMSKAYWRKATACMKLEEYETAKVALEKGASL   99 (379)
Q Consensus        39 ~~~ra~~~~~lg~~~eAl~~~~~Al~l~---------p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l   99 (379)
                      +..+..++..+|+|..|++.++.. .++         +.....+|..|.+|+.+++|.+|+..|..++-.
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y  193 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY  193 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666777899999999887642 222         235678899999999999999999999987653

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=83.97  E-value=7.7  Score=36.63  Aligned_cols=72  Identities=21%  Similarity=0.174  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 016973           36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK  111 (379)
Q Consensus        36 ~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~  111 (379)
                      .+.-+.-+.-....|++.+|...|..++...|.+..+.+.++.||...|+.+.|...|..    .|.+.....+..
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~----lP~~~~~~~~~~  205 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA----LPLQAQDKAAHG  205 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh----CcccchhhHHHH
Confidence            344566777788899999999999999999999999999999999999999999876654    354444444444

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=83.84  E-value=4.6  Score=43.20  Aligned_cols=79  Identities=22%  Similarity=0.132  Sum_probs=49.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHH
Q 016973            9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET   88 (379)
Q Consensus         9 g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~   88 (379)
                      |..+...|-.++|+.+|.++-+.+     +   +-..|...|++++|++.++.-=+++  ....||+.|..+...++.+.
T Consensus       807 AvLAieLgMlEeA~~lYr~ckR~D-----L---lNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~  876 (1416)
T KOG3617|consen  807 AVLAIELGMLEEALILYRQCKRYD-----L---LNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEA  876 (1416)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHH-----H---HHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHH
Confidence            344455555666666665553322     1   2224555566666666554332222  35679999999999999999


Q ss_pred             HHHHHHHHH
Q 016973           89 AKVALEKGA   97 (379)
Q Consensus        89 A~~~~~~a~   97 (379)
                      |+++|+++-
T Consensus       877 AleyyEK~~  885 (1416)
T KOG3617|consen  877 ALEYYEKAG  885 (1416)
T ss_pred             HHHHHHhcC
Confidence            999999763

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=83.55  E-value=8  Score=37.21  Aligned_cols=96  Identities=16%  Similarity=0.105  Sum_probs=67.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCHHHHHHHH
Q 016973           16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL--EPSMSKAYWRKATACMKLEEYETAKVAL   93 (379)
Q Consensus        16 g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l--~p~~~~a~~~la~~~~~lg~y~~A~~~~   93 (379)
                      -+|..=..+|+-.....|. +..-+||+.+.-+..=.+.++...+.....  -..+..+|--+|..+.++|+-.+|...|
T Consensus       310 tDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ay  388 (415)
T COG4941         310 TDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAY  388 (415)
T ss_pred             CChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHH
Confidence            3455545556555555554 556678888887776667777666555443  2245567778999999999999999999


Q ss_pred             HHHHhcCCCChHHHHHHHH
Q 016973           94 EKGASLAPGDSRFTNLIKE  112 (379)
Q Consensus        94 ~~a~~l~p~~~~~~~~l~~  112 (379)
                      .+++.+.++..+-...+.+
T Consensus       389 drAi~La~~~aer~~l~~r  407 (415)
T COG4941         389 DRAIALARNAAERAFLRQR  407 (415)
T ss_pred             HHHHHhcCChHHHHHHHHH
Confidence            9999999987764433333

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=83.48  E-value=5.5  Score=36.78  Aligned_cols=59  Identities=14%  Similarity=0.120  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAI   63 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al   63 (379)
                      ....|..++..|+|+.|+.+|+.++...-..      ..++..+..|+.++|+.+..+...-+.+
T Consensus       181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            4678999999999999999999997663322      5667888999999999998887665543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=83.26  E-value=25  Score=33.96  Aligned_cols=91  Identities=16%  Similarity=0.081  Sum_probs=65.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---------------------
Q 016973            9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP---------------------   67 (379)
Q Consensus         9 g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p---------------------   67 (379)
                      -..+.+..+..+-|+.-..||++||..+.+|..+|.-  ......+|.+.+.+|++...                     
T Consensus       191 MQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~r  268 (556)
T KOG3807|consen  191 MQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLR  268 (556)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhh
Confidence            3456677888888999999999999998888877643  23345556666665554321                     


Q ss_pred             --CCHH--HHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 016973           68 --SMSK--AYWRKATACMKLEEYETAKVALEKGASLAP  101 (379)
Q Consensus        68 --~~~~--a~~~la~~~~~lg~y~~A~~~~~~a~~l~p  101 (379)
                        .+..  .-.|+|.|..++|+..+|+..|+...+-.|
T Consensus       269 RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p  306 (556)
T KOG3807|consen  269 RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP  306 (556)
T ss_pred             cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence              1222  235789999999999999999998877666

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.21  E-value=5.9  Score=29.49  Aligned_cols=47  Identities=17%  Similarity=-0.019  Sum_probs=23.4

Q ss_pred             HHHHHHHHHhccCHHHHH-------HHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           73 YWRKATACMKLEEYETAK-------VALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        73 ~~~la~~~~~lg~y~~A~-------~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      +..+|+-+-..|+|.+|+       +.|.+++.+.|+++.......++.+-+..
T Consensus         9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~R   62 (75)
T cd02682           9 YAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRR   62 (75)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence            333444444444444444       44445555677777655555555444433

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=82.99  E-value=5  Score=33.79  Aligned_cols=49  Identities=22%  Similarity=0.191  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccC
Q 016973           37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE   85 (379)
Q Consensus        37 ~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~   85 (379)
                      +..+.+|...+..|+|.-|+..++.++..+|++..+...++.+|.++|.
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~  119 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY  119 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            3344455555555555555555555555555555555555555555443

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.99  E-value=2.2  Score=31.90  Aligned_cols=30  Identities=17%  Similarity=0.194  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI   31 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~   31 (379)
                      |..+..+|..+-..|+|++|+.+|..+|+.
T Consensus         6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~   35 (76)
T cd02681           6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQL   35 (76)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            456777788888888888888888888775

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=82.93  E-value=6.1  Score=35.28  Aligned_cols=55  Identities=25%  Similarity=0.176  Sum_probs=37.7

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhccCHHHHH
Q 016973           35 SAELFADRAQASIKLQNFTEAVADANRAIELEPS----MSKAYWRKATACMKLEEYETAK   90 (379)
Q Consensus        35 ~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~----~~~a~~~la~~~~~lg~y~~A~   90 (379)
                      .+++.+.+|..|. ..+.++|+..+.+++.+...    +++.+..++.+++.+|+++.|.
T Consensus       140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            3666666665554 46677777777777777532    5777777777777777777764

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=82.75  E-value=9.8  Score=28.60  Aligned_cols=57  Identities=11%  Similarity=0.062  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHhccCHHHHHHHHHH
Q 016973           39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR---KATACMKLEEYETAKVALEK   95 (379)
Q Consensus        39 ~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~---la~~~~~lg~y~~A~~~~~~   95 (379)
                      ....|.=++..++.++|+..+.+++...++....+..   +..+|...|+|.+++.+.-+
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~   68 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ   68 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556777788899999999999999998776654444   55678899999998876543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=82.42  E-value=3  Score=30.17  Aligned_cols=30  Identities=47%  Similarity=0.490  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI   31 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~   31 (379)
                      |-.+...|..+-..|+|++|+.+|.+++..
T Consensus         5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~   34 (69)
T PF04212_consen    5 AIELIKKAVEADEAGNYEEALELYKEAIEY   34 (69)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            445677788888888888888888877765

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=82.17  E-value=4.7  Score=26.63  Aligned_cols=25  Identities=24%  Similarity=0.252  Sum_probs=18.2

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHh
Q 016973           74 WRKATACMKLEEYETAKVALEKGAS   98 (379)
Q Consensus        74 ~~la~~~~~lg~y~~A~~~~~~a~~   98 (379)
                      +.+|.+|..+|+++.|...++..+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5677777777777777777777773

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=82.07  E-value=5.4  Score=37.65  Aligned_cols=59  Identities=20%  Similarity=0.163  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 016973           38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKG   96 (379)
Q Consensus        38 ~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a   96 (379)
                      ++...|..|...|.+.+|++..++++.++|-+-..+..+-.+|..+|+--.|...|++.
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            34556777888899999999999999999999999999999999999977777666653

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.51  E-value=14  Score=37.65  Aligned_cols=84  Identities=14%  Similarity=0.013  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC------C-CCHHHHHHHHHHHHhccC-HHHHHHHHHHHHhcCCCChHHHH
Q 016973           37 ELFADRAQASIKLQNFTEAVADANRAIELE------P-SMSKAYWRKATACMKLEE-YETAKVALEKGASLAPGDSRFTN  108 (379)
Q Consensus        37 ~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~------p-~~~~a~~~la~~~~~lg~-y~~A~~~~~~a~~l~p~~~~~~~  108 (379)
                      .-++.+|.|+..+|+-..|..+|..++.--      + -.|-|+|-+|..|..+|. ..+|.+++.+|.....+..--.+
T Consensus       450 lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~lenR  529 (546)
T KOG3783|consen  450 LKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYELENR  529 (546)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccchhhH
Confidence            346779999999999999999999888331      1 257899999999999999 99999999999988766654445


Q ss_pred             HHHHHHHHHHhh
Q 016973          109 LIKECEERIAEE  120 (379)
Q Consensus       109 ~l~~~~~~l~~~  120 (379)
                      ..-+++..+...
T Consensus       530 Lh~rIqAAl~~~  541 (546)
T KOG3783|consen  530 LHMRIQAALHTV  541 (546)
T ss_pred             HHHHHHHHHHHH
Confidence            555666665554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=81.38  E-value=14  Score=37.24  Aligned_cols=89  Identities=15%  Similarity=0.079  Sum_probs=48.8

Q ss_pred             HHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHh---------C--CC
Q 016973            9 AKEAFIDDYFELAYDLYS--QAIEISPNSAELFADRAQASIKLQNFTEAVAD-------ANRAIEL---------E--PS   68 (379)
Q Consensus         9 g~~~~~~g~y~~Al~~y~--~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~-------~~~Al~l---------~--p~   68 (379)
                      -..+.-+++|++++++..  +.+..-|  .......+..+.+.|..+.|++.       |+-|+++         .  -+
T Consensus       268 fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~  345 (443)
T PF04053_consen  268 FKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELD  345 (443)
T ss_dssp             HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCS
T ss_pred             HHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcC
Confidence            345566777777665553  2221122  23344444455555555555432       2222222         2  24


Q ss_pred             CHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973           69 MSKAYWRKATACMKLEEYETAKVALEKGASL   99 (379)
Q Consensus        69 ~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l   99 (379)
                      +...|-++|.+....|+++-|..+|+++-.+
T Consensus       346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~  376 (443)
T PF04053_consen  346 DPEKWKQLGDEALRQGNIELAEECYQKAKDF  376 (443)
T ss_dssp             THHHHHHHHHHHHHTTBHHHHHHHHHHCT-H
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc
Confidence            7889999999999999999999999987543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=81.14  E-value=8.4  Score=39.35  Aligned_cols=73  Identities=10%  Similarity=0.150  Sum_probs=52.6

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973           26 SQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL   99 (379)
Q Consensus        26 ~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l   99 (379)
                      .+-|+.+|.+...|+.+-.-+... -+++...+|+..+...|..+.+|-......+..++|+.-...|.+|+.-
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk   82 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK   82 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            556677777777777766555433 7777777777777777777777777777777777777777777777653

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=80.93  E-value=6.9  Score=41.12  Aligned_cols=82  Identities=15%  Similarity=0.019  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      .+++.+.|..+..+..+++|.++|.+.-.        ..+...||+++..|++-.    .....-|.+.+.+-.+|.++.
T Consensus       796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE----~la~~Lpe~s~llp~~a~mf~  863 (1189)
T KOG2041|consen  796 EDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELE----VLARTLPEDSELLPVMADMFT  863 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHH----HHHHhcCcccchHHHHHHHHH
Confidence            45778889999999999999999976422        356778888888888633    444445666666777777777


Q ss_pred             hccCHHHHHHHHHH
Q 016973           82 KLEEYETAKVALEK   95 (379)
Q Consensus        82 ~lg~y~~A~~~~~~   95 (379)
                      ..|--++|.++|-+
T Consensus       864 svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  864 SVGMCDQAVEAYLR  877 (1189)
T ss_pred             hhchHHHHHHHHHh
Confidence            77777777766643

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=80.72  E-value=4.5  Score=23.58  Aligned_cols=29  Identities=34%  Similarity=0.466  Sum_probs=18.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973           16 DYFELAYDLYSQAIEISPNSAELFADRAQ   44 (379)
Q Consensus        16 g~y~~Al~~y~~al~~~p~~~~~~~~ra~   44 (379)
                      |+++.|..+|++++...|.+..+|...+.
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            45666777777777777766666665543

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=80.13  E-value=7.2  Score=36.86  Aligned_cols=59  Identities=19%  Similarity=0.095  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAI   63 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al   63 (379)
                      +...+..|...|.+.+|+++.++++.++|-+...+..+-..|..+|+--.|+..|.+.-
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            34457789999999999999999999999999999999999999999888887776643

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=80.07  E-value=5.6  Score=40.46  Aligned_cols=73  Identities=16%  Similarity=0.067  Sum_probs=60.1

Q ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCH---HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhc
Q 016973           50 QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY---ETAKVALEKGASLAPGDSRFTNLIKECEERIAEETG  122 (379)
Q Consensus        50 g~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y---~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~  122 (379)
                      +....|+.+|.++++..|.....+.+++-++...+-.   -.|+..+..|++++|....+..++.++...|....+
T Consensus       388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~e  463 (758)
T KOG1310|consen  388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLE  463 (758)
T ss_pred             HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHH
Confidence            4567899999999999999999999999999886544   456677778889999988888888888877777633

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	379
2xcm_C	92	Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord		1e-35
2jki_S	90	Complex Of Hsp90 N-terminal And Sgt1 Cs Domain Leng		4e-34
1rl1_A	114	Solution Structure Of Human Sgt1 Cs Domain Length =		4e-12
1wao_1	477	Pp5 Structure Length = 477		8e-11
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		4e-10
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		5e-10
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		9e-10
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		4e-09
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		5e-09
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		2e-07
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		7e-07
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		2e-06
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		3e-06
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		4e-06
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		6e-06
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		3e-05
3sz7_A	164	Crystal Structure Of The Sgt2 Tpr Domain From Asper		5e-05
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		6e-05
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		9e-05
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		2e-04
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		3e-04
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		3e-04

>pdb|2XCM|C Chain C, Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord2 Domain Length = 92

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/96 (73%), Positives = 81/96 (84%), Gaps = 5/96 (5%)
Query: 173 KYRFQILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLF 232
           KYR     HE+YQKPEEVVVTVFAKGIP +NV +DFGEQILSV I+VPGE+AY+ QPRLF
Sbjct: 2   KYR-----HEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLF 56
Query: 233 GKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSK 268
           GKIIP KC+YEVLSTK+EI LAKA+ I W+SLE  K
Sbjct: 57  GKIIPDKCKYEVLSTKIEICLAKADIITWASLEHGK 92

>pdb|2JKI|S Chain S, Complex Of Hsp90 N-terminal And Sgt1 Cs Domain Length = 90

Iteration: 1
 Score =  142 bits (357), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 70/93 (75%), Positives = 80/93 (86%), Gaps = 5/93 (5%)
Query: 173 KYRFQILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLF 232
           KYR     HE+YQKPEEVVVTVFAKGIP +NV +DFGEQILSV I+VPGE+AY+ QPRLF
Sbjct: 1   KYR-----HEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLF 55
Query: 233 GKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLE 265
           GKIIP KC+YEVLSTK+EI LAKA+ I W+SLE
Sbjct: 56  GKIIPDKCKYEVLSTKIEICLAKADIITWASLE 88

>pdb|1RL1|A Chain A, Solution Structure Of Human Sgt1 Cs Domain Length = 114

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 53/85 (62%)
Query: 181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKC 240
           +++YQ   +VV+T+  K +   +V V+F E+ LS  + +P  E Y+ +  L   IIP + 
Sbjct: 12  YDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQS 71
Query: 241 RYEVLSTKVEIRLAKAEPIQWSSLE 265
            ++VLSTK+EI+L K E ++W  LE
Sbjct: 72  TFKVLSTKIEIKLKKPEAVRWEKLE 96

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 66/122 (54%)
Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +L+ +A + F    +E A   YSQAIE++P++A  + +R+ A ++ + +  A+ DA R
Sbjct: 6   AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121
           AIEL+    K Y+R+A + M L ++  A    E    + P D       +EC + + ++ 
Sbjct: 66  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 125
Query: 122 GE 123
            E
Sbjct: 126 FE 127

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 66/122 (54%)
Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +L+ +A + F    +E A   YSQAIE++P++A  + +R+ A ++ + +  A+ DA R
Sbjct: 13  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72
Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121
           AIEL+    K Y+R+A + M L ++  A    E    + P D       +EC + + ++ 
Sbjct: 73  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 132
Query: 122 GE 123
            E
Sbjct: 133 FE 134

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 55/102 (53%)
Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           FE A   Y +AIE++P +A  F +RA A  KL N+  AV D  RAI ++P+ SKAY R  
Sbjct: 28  FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87
Query: 78  TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119
            A   L ++  A    +K   L P +  + + +K  E ++ E
Sbjct: 88  LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Query: 10  KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69
           KE F    +  A   Y++ I+ +P  A  +++RA A  KL +F EA+AD N+AIE +P+ 
Sbjct: 12  KEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 71
Query: 70  SKAYWRKATACMKLEEY----ETAKVALEKGASLAPGDS 104
            +AY RKATA + ++EY    ET   A  K A +  G S
Sbjct: 72  VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSS 110

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 25  YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84
           Y++ I+ +P  A  +++RA A  KL +F EA+AD N+AIE +P+  +AY RKATA + ++
Sbjct: 162 YTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 221
Query: 85  EY----ETAKVALEKGASLAPGDS 104
           EY    ET   A  K A +  G S
Sbjct: 222 EYASALETLDAARTKDAEVNNGSS 245

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 51/99 (51%)
Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           +A  ++ K  E F    +  A   Y++AI+ +P  A+L+++RA    KL  F  A+ D  
Sbjct: 15  LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCE 74
Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99
             I+LEP+  K Y RKA A   +++Y  A    +K   L
Sbjct: 75  ECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 52/94 (55%)
Query: 3  TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRA 62
           +L++K  +A      + A   YS+AI++ P++  L+++R+ A  K  ++ +A  D  + 
Sbjct: 5  NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 64
Query: 63 IELEPSMSKAYWRKATACMKLEEYETAKVALEKG 96
          ++L+P   K Y RKA A   L  +E AK   E+G
Sbjct: 65 VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEG 98

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 53/113 (46%)
Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           +A + + K  E F    +  A   Y++A++  P +A L+++RA    KL  F  A+ D +
Sbjct: 12  LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCD 71
Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113
             I L+    K Y RKA   + + E+  A+ A E    + P +      ++ C
Sbjct: 72  TCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 53/99 (53%)
Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +L+++    F+   +  A   Y +AI  +P  A  + +RA   +K+Q   +A+AD  R
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100
           A+EL+    KA++      +++E Y+ A   L++  SLA
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 102

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 53/99 (53%)
Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +L+++    F+   +  A   Y +AI  +P  A  + +RA   +K+Q   +A+AD  R
Sbjct: 9   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68
Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100
           A+EL+    KA++      +++E Y+ A   L++  SLA
Sbjct: 69  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 51/88 (57%)
Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A + Y +A+E+ PN+A  + +   A  K  ++ +A+    +A+EL+P+ +KA++R+ 
Sbjct: 25  YQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRG 84
Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR 105
            A  K  +Y+ A    +K   L P +++
Sbjct: 85  NAYYKQGDYQKAIEDYQKALELDPNNAK 112

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 5   LEKKAKEAFIDDYFELAYDLYSQAIEISP---NSAELFADRAQASIKLQNFTEAVADANR 61
           L K+  E F    +  A   Y+QA+ +     + A L  +RA   +KL+++ +A  +A++
Sbjct: 31  LRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASK 90
Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK 111
           AIE +    KA +R++ A  KL   + A + L++  SL P +  F   ++
Sbjct: 91  AIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140

>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 46/92 (50%)
Query: 5   LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE 64
           L+ +   A     +  A DLY+QA+ I+P +    ++RA A        +A  DA  A  
Sbjct: 14  LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV 73
Query: 65  LEPSMSKAYWRKATACMKLEEYETAKVALEKG 96
           ++P  SKA+ R   A   + +Y+ AK A EKG
Sbjct: 74  VDPKYSKAWSRLGLARFDMADYKGAKEAYEKG 105

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 49/87 (56%)
Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A + Y +A+E+ PN+AE + +   A  K  ++ EA+    +A+EL+P+ ++A++   
Sbjct: 25  YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG 84
Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
            A  K  +Y+ A    +K   L P ++
Sbjct: 85  NAYYKQGDYDEAIEYYQKALELDPNNA 111

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 40/75 (53%)
Query: 43  AQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102
           A   +KLQ F+ A+   N+A+EL+ +  K  +R+  A + + ++E A+   +K   L P 
Sbjct: 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPN 262
Query: 103 DSRFTNLIKECEERI 117
           +      +  C++RI
Sbjct: 263 NKAAKTQLAVCQQRI 277

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 16  DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75
           DY E A + Y +A+E+ PN+AE + +   A  K  ++ EA+    +A+EL P+ ++A++ 
Sbjct: 24  DYDE-AIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYN 82
Query: 76  KATACMKLEEYETAKVALEKGASLAPGDS 104
              A  K  +Y+ A    +K   L P ++
Sbjct: 83  LGNAYYKQGDYDEAIEYYQKALELYPNNA 111

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 43  AQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102
           A   +KLQ F+ A+   N+A+EL+ +  K   R+  A + + ++E A+   +K   L P 
Sbjct: 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262
Query: 103 DSRFTNLIKECEERI 117
           +      +  C++RI
Sbjct: 263 NKAAKTQLAVCQQRI 277

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 45/84 (53%)
Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A + Y +A+E+ P SAE + +   A  K  ++ EA+    +A+EL+P  ++A++   
Sbjct: 17  YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 76
Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            A  K  +Y+ A    +K   L P
Sbjct: 77  NAYYKQGDYDEAIEYYQKALELDP 100

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	379
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	4e-32
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-31
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	6e-04
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	3e-31
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-30
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	5e-29
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	5e-05
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-28
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	5e-06
1wh0_A	134	Ubiquitin carboxyl-terminal hydrolase 19; USP, CS	1e-28
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	3e-28
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-04
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	4e-28
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-06
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	9e-28
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	6e-07
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	9e-27
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-26
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	5e-06
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	8e-04
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	7e-25
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	4e-24
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	3e-04
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-21
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	5e-20
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-05
2l6j_A	111	TPR repeat-containing protein associated with HSP;	7e-20
2l6j_A	111	TPR repeat-containing protein associated with HSP;	5e-05
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	1e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-08
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	4e-18
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-18
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-06
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	1e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-15
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-14
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-07
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-16
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-07
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	4e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-04
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-13
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-13
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-13
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	8e-13
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-10
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	8e-13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	8e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	9e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	8e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-04
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	6e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-11
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-11
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-09
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	8e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	9e-11
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-10
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-10
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	8e-10
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	8e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-09
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-09
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-05
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	9e-09
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	5e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-05
2kmw_A	150	Uncharacterized protein AT3G03773; protein structu	3e-08
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-08
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	8e-06
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	6e-08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	4e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	5e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-06
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	4e-06
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	7e-06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	8e-06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	2e-05
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	8e-06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	9e-06
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	4e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	5e-04

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Length = 92

 Score =  115 bits (289), Expect = 4e-32
 Identities = 68/90 (75%), Positives = 78/90 (86%)

Query: 179 LMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPA 238
             HE+YQKPEEVVVTVFAKGIP +NV +DFGEQILSV I+VPGE+AY+ QPRLFGKIIP 
Sbjct: 3   YRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPD 62

Query: 239 KCRYEVLSTKVEIRLAKAEPIQWSSLEFSK 268
           KC+YEVLSTK+EI LAKA+ I W+SLE  K
Sbjct: 63  KCKYEVLSTKIEICLAKADIITWASLEHGK 92

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  115 bits (289), Expect = 2e-31
 Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +   + KE F    +  A   Y++ I+ +P  A  +++RA A  KL +F EA+AD N+
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP--GDSRFTNLIKECEERIAE 119
           AIE +P+  +AY RKATA + ++EY +A   L+   +      +      I +   + ++
Sbjct: 64  AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123

Query: 120 E 120
           +
Sbjct: 124 Q 124

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 12/55 (21%), Positives = 20/55 (36%)

Query: 35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA 89
           AE      +      ++  AV      I+  P  ++ Y  +A A  KL  +  A
Sbjct: 3  KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEA 57

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Length = 114

 Score =  113 bits (285), Expect = 3e-31
 Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 5/113 (4%)

Query: 168 APARPKYRFQILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHF 227
              + K +     +++YQ   +VV+T+  K +   +V V+F E+ LS  + +P  E Y+ 
Sbjct: 4   MTHQSKIK-----YDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNL 58

Query: 228 QPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPS 280
           +  L   IIP +  ++VLSTK+EI+L K E ++W  LE       P++     
Sbjct: 59  KLELLHPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLEGQGDVPTPKQFVADV 111

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  111 bits (281), Expect = 2e-30
 Identities = 31/116 (26%), Positives = 58/116 (50%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
              +L++K  +A      + A   YS+AI++ P++  L+++R+ A  K  ++ +A  D  
Sbjct: 3   QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC 62

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116
           + ++L+P   K Y RKA A   L  +E AK   E+G      + +    ++  E R
Sbjct: 63  KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 118

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  108 bits (272), Expect = 5e-29
 Identities = 30/114 (26%), Positives = 53/114 (46%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           +A + + K  E F    +  A   Y++A++  P +A L+++RA    KL  F  A+ D +
Sbjct: 12  LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCD 71

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114
             I L+    K Y RKA   + + E+  A+ A E    + P +      ++ C 
Sbjct: 72  TCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 14/64 (21%), Positives = 30/64 (46%)

Query: 26 SQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85
          ++   I+P  A+   ++     K  ++  A+   N A++ +P  +  Y  +A    KL E
Sbjct: 3  ARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME 62

Query: 86 YETA 89
          ++ A
Sbjct: 63 FQRA 66

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  108 bits (272), Expect = 1e-28
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 2/134 (1%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           +  L+ +   A     +  A DLY+QA+ I+P +    ++RA A        +A  DA  
Sbjct: 11  SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP--GDSRFTNLIKECEERIAE 119
           A  ++P  SKA+ R   A   + +Y+ AK A EKG       G       ++  + +I E
Sbjct: 71  ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEE 130

Query: 120 ETGELQKQPLETGP 133
                +    +   
Sbjct: 131 ANRGAEPPADDVDD 144

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 2/90 (2%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK- 76
            E A +    A  + P  ++ ++    A   + ++  A     + IE E +      ++ 
Sbjct: 61  HEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120

Query: 77  -ATACMKLEEYETAKVALEKGASLAPGDSR 105
             T   K+EE              A G SR
Sbjct: 121 LETTKRKIEEANRGAEPPADDVDDAAGASR 150

>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3 Length = 134

 Score =  107 bits (268), Expect = 1e-28
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 13/118 (11%)

Query: 161 SNEAAMAAPARPKYRFQILMHEFYQK-PEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV 219
           S+ ++             + ++ Y+K P+ VVV V+ K I      V F EQ  ++    
Sbjct: 2   SSGSSGVDEPESMVNLAFVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQT 61

Query: 220 P------------GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLE 265
                            + +Q +L   I P +C +   +++++I L K +  +W  LE
Sbjct: 62  RDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFCFTASRIDICLRKRQSQRWGGLE 119

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  107 bits (269), Expect = 3e-28
 Identities = 37/122 (30%), Positives = 66/122 (54%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +L+ +A + F    +E A   YSQAIE++P++A  + +R+ A ++ + +  A+ DA R
Sbjct: 13  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121
           AIEL+    K Y+R+A + M L ++  A    E    + P D       +EC + + ++ 
Sbjct: 73  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 132

Query: 122 GE 123
            E
Sbjct: 133 FE 134

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWR 75
           +  A    ++AIE+     + +  RA +++ L  F  A+ D    ++++P    +K  ++
Sbjct: 63  YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 122

Query: 76  KATACMKLEEYETAKVALEKGASLAPG 102
           +    +K + +E A    E   S+   
Sbjct: 123 ECNKIVKQKAFERAIAGDEHKRSVVDS 149

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  106 bits (266), Expect = 4e-28
 Identities = 40/118 (33%), Positives = 61/118 (51%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A  L+ +  E    + FE A   Y +AIE++P +A  F +RA A  KL N+  AV D  R
Sbjct: 12  AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119
           AI ++P+ SKAY R   A   L ++  A    +K   L P +  + + +K  E ++ E
Sbjct: 72  AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 19/60 (31%), Positives = 27/60 (45%)

Query: 30 EISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA 89
          E     AE         +K++NF  AV    +AIEL P+ +  +  +A A  KL  Y  A
Sbjct: 6  EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGA 65

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  105 bits (263), Expect = 9e-28
 Identities = 33/115 (28%), Positives = 54/115 (46%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           +A  ++ K  E F    +  A   Y++AI+ +P  A+L+++RA    KL  F  A+ D  
Sbjct: 15  LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCE 74

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115
             I+LEP+  K Y RKA A   +++Y  A    +K   L        +  + C  
Sbjct: 75  ECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 47.2 bits (113), Expect = 6e-07
 Identities = 13/65 (20%), Positives = 30/65 (46%)

Query: 25 YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84
          +     ++P+ A +  ++     +  ++ +A+     AI+  P  +K Y  +A    KL 
Sbjct: 5  HHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL 64

Query: 85 EYETA 89
          E++ A
Sbjct: 65 EFQLA 69

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score =  110 bits (276), Expect = 9e-27
 Identities = 36/119 (30%), Positives = 65/119 (54%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +L+ +A + F    +E A   YSQAIE++P++A  + +R+ A ++ + +  A+ DA R
Sbjct: 6   AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           AIEL+    K Y+R+A + M L ++  A    E    + P D       +EC + + ++
Sbjct: 66  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQK 124

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  101 bits (254), Expect = 2e-26
 Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 5/124 (4%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +L+++    F+   +  A   Y +AI  +P  A  + +RA   +K+Q   +A+AD  R
Sbjct: 9   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS-----RFTNLIKECEER 116
           A+EL+    KA++      +++E Y+ A   L++  SLA            + ++  +++
Sbjct: 69  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128

Query: 117 IAEE 120
               
Sbjct: 129 RWNS 132

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 13/78 (16%), Positives = 33/78 (42%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A     +A+E+   S +      Q  ++++++ EA+A+  RA  L       +    
Sbjct: 59  PEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI 118

Query: 78  TACMKLEEYETAKVALEK 95
            + +++ + +      E+
Sbjct: 119 PSALRIAKKKRWNSIEER 136

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 14/62 (22%), Positives = 27/62 (43%)

Query: 28 AIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE 87
             +   SA+   ++       + + EA A   RAI   P ++  Y  +A   +K+++ E
Sbjct: 1  GPHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE 60

Query: 88 TA 89
           A
Sbjct: 61 QA 62

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 97.8 bits (244), Expect = 7e-25
 Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 5/118 (4%)

Query: 6   EKKAK--EAFIDDYFELAYDLYSQAIEISPNSAE---LFADRAQASIKLQNFTEAVADAN 60
           + + +  E F    +  A   Y+QA+ +     +   L  +RA   +KL+++ +A  +A+
Sbjct: 30  QLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEAS 89

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118
           +AIE +    KA +R++ A  KL   + A + L++  SL P +  F   ++      +
Sbjct: 90  KAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPSS 147

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 99.2 bits (247), Expect = 4e-24
 Identities = 32/119 (26%), Positives = 58/119 (48%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +L+++    F+   +  A   Y +AI  +P  A  + +RA   +K+Q   +A+AD  R
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           A+EL+    KA++      +++E Y+ A   L++  SLA               RIA++
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 122

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 13/78 (16%), Positives = 33/78 (42%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A     +A+E+   S +      Q  ++++++ EA+A+  RA  L       +    
Sbjct: 54  PEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI 113

Query: 78  TACMKLEEYETAKVALEK 95
            + +++ + +      E+
Sbjct: 114 PSALRIAKKKRWNSIEER 131

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 87.7 bits (218), Expect = 2e-21
 Identities = 23/126 (18%), Positives = 50/126 (39%), Gaps = 8/126 (6%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A   ++   +A+    F+ A   Y +A E+ P +     ++A    +  ++ +      +
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 62  AIELEP-------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114
           AIE+          ++KAY R   +  K E+Y+ A     K  +            ++ E
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKC-QQAE 122

Query: 115 ERIAEE 120
           + + E+
Sbjct: 123 KILKEQ 128

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 83.9 bits (208), Expect = 5e-20
 Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 8/120 (6%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A   +     A+    FE A+  Y +AIE+ P++   + ++A    + + F E V    +
Sbjct: 8   AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67

Query: 62  AIELEPSM-------SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114
           A+E+           +KA  R   A  K  +   A     +  S    D      +KE E
Sbjct: 68  AVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVKKVKELE 126

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 20/89 (22%), Positives = 35/89 (39%)

Query: 30  EISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA 89
               ++A    D   A+ K ++F +A    ++AIEL+PS    Y  KA    + +++   
Sbjct: 2   NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAEC 61

Query: 90  KVALEKGASLAPGDSRFTNLIKECEERIA 118
               EK   +         LI +   R  
Sbjct: 62  VQFCEKAVEVGRETRADYKLIAKAMSRAG 90

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 83.1 bits (206), Expect = 7e-20
 Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 1  MATDLEKKAK--EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVAD 58
          M+   ++K +    F    +  A   Y Q I   P +   ++++A A IKL  +T+A+  
Sbjct: 1  MSQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQM 60

Query: 59 ANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGAS 98
            + +    +      R      +LE  + A  +++    
Sbjct: 61 CQQGLRYTSTAEHVAIRSK-LQYRLELAQGAVGSVQIPVV 99

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 17/72 (23%), Positives = 28/72 (38%)

Query: 34  NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVAL 93
           +  E   ++  +  K   + EAV   ++ I  +P     Y  KA A +KL EY  A    
Sbjct: 2   SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61

Query: 94  EKGASLAPGDSR 105
           ++G         
Sbjct: 62  QQGLRYTSTAEH 73

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 127

 Score = 80.1 bits (197), Expect = 1e-18
 Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 5/113 (4%)

Query: 161 SNEAAMAAPARPKYRFQILMHEFYQKPEEVVVTVFAKGI---PAKNVTVDFGEQILSVSI 217
           S  + + AP    Y  +I  + + Q  + V + +   G+   P +NV V F E+   + +
Sbjct: 3   SGSSGVVAPITTGYTVKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLV 62

Query: 218 DVPGEEAYHFQ-PRLFGKIIPAKCRYEVLSTKVEIRLAKA-EPIQWSSLEFSK 268
                ++Y      L   I       +V +  V I   K  E  +W  L   +
Sbjct: 63  KNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRWDYLTQVE 115

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 84.7 bits (210), Expect = 3e-18
 Identities = 14/95 (14%), Positives = 37/95 (38%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A   +  A++  P++   +  RA   + +     A+ D  + I+L+   + A  ++ 
Sbjct: 42  LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112
              +K  + + A+   +K     P ++       +
Sbjct: 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ 136

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 80.9 bits (200), Expect = 6e-17
 Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 4/114 (3%)

Query: 7   KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFAD----RAQASIKLQNFTEAVADANRA 62
           + A+E   D  +  A   Y   ++  P+ AE              K +   EA+   +  
Sbjct: 262 ESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321

Query: 63  IELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116
           +++EP    A   +A A +  E Y+ A    E        D +    +++ +  
Sbjct: 322 LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 24/112 (21%), Positives = 48/112 (42%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
              L  +A  AF    +  A     + +E+    AEL   RA+  IK     +A++D   
Sbjct: 143 MQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 202

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113
           A +L+   ++A+++ +T   +L ++E +   + +   L     R     K+ 
Sbjct: 203 ASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 254

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 14/72 (19%), Positives = 31/72 (43%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A  + S+ +++ P++     DRA+A +  + + EA+ D   A E   +  +      
Sbjct: 311 PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370

Query: 78  TACMKLEEYETA 89
            A   L++ +  
Sbjct: 371 KAQRLLKQSQKR 382

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 11/101 (10%), Positives = 31/101 (30%), Gaps = 12/101 (11%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY---- 73
              A      A ++  ++ E F   +    +L +   ++++    ++L+    + +    
Sbjct: 193 PRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 252

Query: 74  --------WRKATACMKLEEYETAKVALEKGASLAPGDSRF 106
                      A   ++   Y  A    E      P  + +
Sbjct: 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEY 293

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 15/102 (14%), Positives = 39/102 (38%), Gaps = 15/102 (14%)

Query: 18  FELAYDLYSQAIEISPNSAEL---------------FADRAQASIKLQNFTEAVADANRA 62
            + A D + + ++ +P+  E                   +A  +    ++T A+A  ++ 
Sbjct: 110 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169

Query: 63  IELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
           +E+    ++    +A   +K  E   A   L+  + L   ++
Sbjct: 170 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNT 211

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 1/90 (1%)

Query: 17  YFELAYDLYSQ-AIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75
           +     DL ++     S    E   +  +  +      +A++  + A++ +P    AY+R
Sbjct: 6   HHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYR 65

Query: 76  KATACMKLEEYETAKVALEKGASLAPGDSR 105
           +AT  + + + + A   L K   L    + 
Sbjct: 66  RATVFLAMGKSKAALPDLTKVIQLKMDFTA 95

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 15/111 (13%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA----- 72
            + A    ++ I++  +       R    +K     EA  D  + ++  PS ++      
Sbjct: 76  SKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQS 135

Query: 73  ----------YWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113
                        +A       +Y  A   L+K   +   D+    L  EC
Sbjct: 136 QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC 186

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 81.0 bits (200), Expect = 4e-18
 Identities = 28/135 (20%), Positives = 57/135 (42%), Gaps = 16/135 (11%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE----------------LFADRAQA 45
           A D++++  E F  +    A   Y +A++   ++ E                   + A  
Sbjct: 38  AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 97

Query: 46  SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105
             K +++ +A+  A++ ++++ +  KA ++   A M     E AK  L K ASL P +  
Sbjct: 98  YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 157

Query: 106 FTNLIKECEERIAEE 120
             N  + C  ++ E 
Sbjct: 158 IRNSYELCVNKLKEA 172

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 81.8 bits (203), Expect = 5e-18
 Identities = 31/91 (34%), Positives = 54/91 (59%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           +  A   Y++ I+ +P  A  +++RA A  KL +F EA+AD N+AIE +P+  +AY RKA
Sbjct: 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 214

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSRFTN 108
           TA + ++EY +A   L+   +     +  ++
Sbjct: 215 TAQIAVKEYASALETLDAARTKDAEVNNGSS 245

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 63.7 bits (156), Expect = 1e-11
 Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 7/117 (5%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F+ A + Y++A E+  +   L  +RA A  +   +  A++  N A+E    M   Y   +
Sbjct: 21  FDEAIEHYNKAWELHKDITYLN-NRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSRFTNL------IKECEERIAEETGELQKQP 128
            +  ++         L+K                    ++  E+ + +   E    P
Sbjct: 80  KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNP 136

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 60.6 bits (148), Expect = 1e-10
 Identities = 17/88 (19%), Positives = 27/88 (30%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E           ++P  AE      +      ++  AV      I+  P  ++ Y  +A
Sbjct: 121 AEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRA 180

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR 105
            A  KL  +  A     K     P   R
Sbjct: 181 AALAKLMSFPEAIADCNKAIEKDPNFVR 208

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.1 bits (144), Expect = 3e-10
 Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 1/88 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
                    + IE    S       A    KL+N  + +  A     + P  ++    + 
Sbjct: 88  AYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEG 146

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR 105
                  ++  A  A  +    AP D+R
Sbjct: 147 KEYFTKSDWPNAVKAYTEMIKRAPEDAR 174

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 57.6 bits (140), Expect = 9e-10
 Identities = 12/70 (17%), Positives = 28/70 (40%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F  A    ++AIE  PN    +  +A A I ++ +  A+   + A   +  ++     + 
Sbjct: 189 FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 248

Query: 78  TACMKLEEYE 87
              +  +  +
Sbjct: 249 IDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 33  PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVA 92
            + A+          K + F EA+   N+A EL   ++     +A A  +  EYETA   
Sbjct: 2   GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAIST 60

Query: 93  LEKGASLAPGDS 104
           L           
Sbjct: 61  LNDAVEQGREMR 72

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 82.2 bits (203), Expect = 1e-17
 Identities = 25/134 (18%), Positives = 56/134 (41%), Gaps = 15/134 (11%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE---------------LFADRAQAS 46
           +T ++++    F +  ++ A   Y + +      +                   + A   
Sbjct: 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206

Query: 47  IKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF 106
           +KLQ F+ A+   N+A+EL+ +  K   R+  A + + ++E A+   +K   L P +   
Sbjct: 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 266

Query: 107 TNLIKECEERIAEE 120
              +  C++RI  +
Sbjct: 267 KTQLAVCQQRIRRQ 280

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 81.9 bits (203), Expect = 2e-17
 Identities = 14/87 (16%), Positives = 34/87 (39%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A   +  A++  P++   +  RA   + +     A+ D  + I L+   + A  ++ 
Sbjct: 19  LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRG 78

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
              +K  + + A+   +K     P + 
Sbjct: 79  HLLLKQGKLDEAEDDFKKVLKSNPSEQ 105

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 76.5 bits (189), Expect = 1e-15
 Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 4/102 (3%)

Query: 7   KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFAD----RAQASIKLQNFTEAVADANRA 62
           + A+E   D  +  A   Y   ++  P+ AE              K +   EA+   +  
Sbjct: 239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEV 298

Query: 63  IELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
           +++EP    A   +A A +  E Y+ A    E        D 
Sbjct: 299 LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQ 340

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 2/112 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           +  A     + +E+    AEL   RA+  IK     +A++D   A +L+   ++A+++ +
Sbjct: 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKIS 195

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR-FTNLIKECEERIAEETGE-LQKQ 127
           T   +L ++E +   + +   L     R F +  +  +     E+ E L + 
Sbjct: 196 TLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 247

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 59.6 bits (145), Expect = 5e-10
 Identities = 14/70 (20%), Positives = 31/70 (44%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A  + S+ +++ P++     DRA+A +  + + EA+ D   A E   +  +      
Sbjct: 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLE 347

Query: 78  TACMKLEEYE 87
            A   L++ +
Sbjct: 348 KAQRLLKQSQ 357

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 11/96 (11%), Positives = 29/96 (30%), Gaps = 12/96 (12%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY---- 73
              A      A ++  ++ E F   +    +L +   ++++    ++L+    + +    
Sbjct: 170 PRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 229

Query: 74  --------WRKATACMKLEEYETAKVALEKGASLAP 101
                      A   ++   Y  A    E      P
Sbjct: 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP 265

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 14/102 (13%), Positives = 38/102 (37%), Gaps = 15/102 (14%)

Query: 18  FELAYDLYSQAIEISPNSAEL---------------FADRAQASIKLQNFTEAVADANRA 62
            + A D + + ++ +P+  E                   +A  +    ++T A+   ++ 
Sbjct: 87  LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKI 146

Query: 63  IELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
           +E+    ++    +A   +K  E   A   L+  + L   ++
Sbjct: 147 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNT 188

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 18/111 (16%), Positives = 33/111 (29%), Gaps = 15/111 (13%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY---- 73
            + A    ++ I +  +       R    +K     EA  D  + ++  PS  +      
Sbjct: 53  SKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES 112

Query: 74  -----------WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113
                        +A       +Y  A   L+K   +   D+    L  EC
Sbjct: 113 QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAEC 163

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 13/70 (18%), Positives = 31/70 (44%)

Query: 36  AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEK 95
            E   +  +  +      +A++  + A++ +P    AY+R+AT  + + + + A   L K
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 96  GASLAPGDSR 105
             +L    + 
Sbjct: 63  VIALKMDFTA 72

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 75.5 bits (186), Expect = 1e-16
 Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 19/139 (13%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAI------------------EISPNSAELFADR 42
               L +K  E F+   ++ A D Y  A+                  E+   +  L+A+ 
Sbjct: 10  SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANM 69

Query: 43  AQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102
           +Q  + + +  EA   ++  ++ E +  KA +R+A A +   + + A+  L+      P 
Sbjct: 70  SQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129

Query: 103 D-SRFTNLIKECEERIAEE 120
             S     +K   ER AE+
Sbjct: 130 AASVVAREMKIVTERRAEK 148

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 12/73 (16%), Positives = 25/73 (34%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A +  S+ ++    + +    RA+A I      EA  D    +   P+ +    R+ 
Sbjct: 79  LHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138

Query: 78  TACMKLEEYETAK 90
               +    + A 
Sbjct: 139 KIVTERRAEKKAD 151

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 24/94 (25%), Positives = 41/94 (43%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A  L+ +    F    F  A   Y  AIE+ PN    +++ +   I   +  + +    +
Sbjct: 25  AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEK 95
           A+E++P  SKA  R+A+A   L  +  A   L  
Sbjct: 85  ALEIKPDHSKALLRRASANESLGNFTDAMFDLSV 118

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 66.3 bits (162), Expect = 4e-12
 Identities = 15/84 (17%), Positives = 33/84 (39%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +  +  + +A++++P     +  R Q    LQ++  A  D  +A  L P     Y + A
Sbjct: 292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA 351

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
               K  ++  ++    +     P
Sbjct: 352 CLLYKQGKFTESEAFFNETKLKFP 375

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 16/119 (13%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIK----------------LQNFTEAVADANR 61
           F+ A   Y  A  +     ++         K                 + F  A+    +
Sbjct: 394 FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTK 453

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           A EL+P   +A    A   +++E+ + A    E  A LA             E    ++
Sbjct: 454 ACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQK 512

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A  L  ++I + P     +   A      +N  E      +A++L P     Y+ + 
Sbjct: 259 LLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG 317

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                L++Y+ AK   +K  SL P
Sbjct: 318 QMYFILQDYKNAKEDFQKAQSLNP 341

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 15/84 (17%), Positives = 32/84 (38%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A + + +A  ++P +   +   A    K   FTE+ A  N      P++ +     A
Sbjct: 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFA 385

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                  +++TA    +    L  
Sbjct: 386 EILTDRGDFDTAIKQYDIAKRLEE 409

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 11/72 (15%), Positives = 21/72 (29%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F  +   +++     P   E+    A+      +F  A+   + A  LE    K +    
Sbjct: 360 FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419

Query: 78  TACMKLEEYETA 89
               K       
Sbjct: 420 PLIGKATILARQ 431

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 1/89 (1%)

Query: 16  DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75
           D +       +    +  N+A              N  +A      +I L P+   +Y  
Sbjct: 223 DMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIF 281

Query: 76  KATACMKLEEYETAKVALEKGASLAPGDS 104
            A      E  +      +K   L P   
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEYP 310

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 56.3 bits (136), Expect = 7e-09
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F  A  L ++A E+ P S +     AQ  ++++   EA+     +  L  +M +    +A
Sbjct: 444 FNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL--QA 501

Query: 78  TACMKLEEYETA 89
           T   +  + +  
Sbjct: 502 TTFAEAAKIQKR 513

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 18 FELAYDLYSQAIEISPNSAELFAD----RAQASIKLQNFTEAVADANRAIELEPSMSKAY 73
                  +Q   +SP+  + +A     R       +NF EA+     AIEL+P+    Y
Sbjct: 3  HMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFY 62

Query: 74 WRKATACMKLEEYETAKVALEK 95
             +   +   + E       K
Sbjct: 63 SNISACYISTGDLEKVIEFTTK 84

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 14/104 (13%), Positives = 34/104 (32%), Gaps = 2/104 (1%)

Query: 8   KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK--LQNFTEAVADANRAIEL 65
           +         ++ AY L S A++   ++ +     A   +      +   ++       L
Sbjct: 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238

Query: 66  EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL 109
             + + A                A+V L++  +L P  + +  L
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFL 282

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 72.0 bits (176), Expect = 4e-14
 Identities = 26/137 (18%), Positives = 45/137 (32%), Gaps = 17/137 (12%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE-----------------LFADRA 43
            A   +      F ++  E A   Y  AI    +                       + A
Sbjct: 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIA 237

Query: 44  QASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD 103
              IKL+ + EA+   N  +  E    KA +R+  A  +L + ++A+    K    AP D
Sbjct: 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD 297

Query: 104 SRFTNLIKECEERIAEE 120
                 ++   E+    
Sbjct: 298 KAIRRELRALAEQEKAL 314

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 72.1 bits (177), Expect = 6e-14
 Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 2  ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
          A  L+ K  + F +  ++ A   Y+ A+E+  +    +++ +   + + +  + V  + +
Sbjct: 6  ALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTK 64

Query: 62 AIELEPSMSKAYWRKATACMKLEEYETAKVALEK 95
          A+EL+P  SK   R+A+A   L ++  A   L  
Sbjct: 65 ALELKPDYSKVLLRRASANEGLGKFADAMFDLSV 98

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 70.2 bits (172), Expect = 2e-13
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 9/112 (8%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIK---------LQNFTEAVADANRAIELEPS 68
           F+ A   Y  AIE+      ++   A    K         ++NF EA     +A +L+P 
Sbjct: 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR 447

Query: 69  MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
             +A    A   ++ E+ + A    E+ A LA         I   E    ++
Sbjct: 448 SEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQQ 499

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 68.6 bits (168), Expect = 8e-13
 Identities = 17/87 (19%), Positives = 40/87 (45%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
               Y+ + +A+++  N++ ++  R Q +  LQN+ +A  D ++A EL+P     Y + A
Sbjct: 286 STEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLA 345

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
               +  +++  +    +     P   
Sbjct: 346 CLAYRENKFDDCETLFSEAKRKFPEAP 372

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A++   +AIE+ P     +   A       + TE     ++A++L+ + S  Y+ + 
Sbjct: 253 PLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRG 311

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
                L+ Y+ A    +K   L P + 
Sbjct: 312 QMNFILQNYDQAGKDFDKAKELDPENI 338

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 11/88 (12%), Positives = 27/88 (30%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A   + +A E+ P +   +   A  + +   F +     + A    P   +     A
Sbjct: 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFA 379

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR 105
                  +++ A    +    L      
Sbjct: 380 EILTDKNDFDKALKQYDLAIELENKLDG 407

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 1/88 (1%)

Query: 17  YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76
            FE   D  ++  ++    A              +   A  D  +AIEL P ++ +Y   
Sbjct: 218 LFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN-SYIYM 276

Query: 77  ATACMKLEEYETAKVALEKGASLAPGDS 104
           A       +        +K   L   +S
Sbjct: 277 ALIMADRNDSTEYYNYFDKALKLDSNNS 304

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 60.1 bits (146), Expect = 4e-10
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 9/93 (9%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F+    L+S+A    P + E+    A+      +F +A+   + AIELE  +   Y   A
Sbjct: 354 FDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIA 413

Query: 78  TACMK---------LEEYETAKVALEKGASLAP 101
               K         +E +  A   LEK + L P
Sbjct: 414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 15/105 (14%), Positives = 37/105 (35%), Gaps = 1/105 (0%)

Query: 6   EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK-LQNFTEAVADANRAIE 64
           + +   A  D+  E   +L +    +   S E +    ++  K  + F E +   N   +
Sbjct: 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK 231

Query: 65  LEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL 109
           L+  ++ +            +   A   ++K   L P  + +  +
Sbjct: 232 LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYM 276

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 10/87 (11%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRA---IELEPSMSKAYW 74
            +   ++ ++A+E+ P+ +++   RA A+  L  F +A+ D +      +   +  +   
Sbjct: 55  LKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114

Query: 75  RKATACMKLEEYETAKVALEKGASLAP 101
            +      + + +     ++   +   
Sbjct: 115 ERNLNKQAMSKLKEKFGDIDTATATPT 141

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 1/73 (1%)

Query: 33  PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVA 92
              A    D+     + + + +A+   N A+EL+      Y   +   + + + +     
Sbjct: 3   DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEM 61

Query: 93  LEKGASLAPGDSR 105
             K   L P  S+
Sbjct: 62  STKALELKPDYSK 74

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 70.9 bits (173), Expect = 1e-13
 Identities = 28/135 (20%), Positives = 56/135 (41%), Gaps = 15/135 (11%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNSAE----------LFADRAQA 45
            A  +++K    F    +  A   Y + +         +  E           F + A  
Sbjct: 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326

Query: 46  SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105
            +KL+ +T+AV   ++A+ L+ +  K  +R+  A + + E+E+AK   EK   + P +  
Sbjct: 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386

Query: 106 FTNLIKECEERIAEE 120
               I  C+++  E 
Sbjct: 387 ARLQISMCQKKAKEH 401

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 65.8 bits (161), Expect = 1e-13
 Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 6/106 (5%)

Query: 21  AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80
             +     +    ++  L     +   + + F  A+     A++ +P+ S A+       
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 81  MKLEEYETAKVALEKGASLAP--GD----SRFTNLIKECEERIAEE 120
               +   A+ A E G + A   GD          ++      A E
Sbjct: 64  QGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALE 109

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 43  AQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102
               +K+ ++  AV     A+E++PS +KA +R+A     L+EY+ A   L+K   +AP 
Sbjct: 280 GACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339

Query: 103 DSRFTNLIKECEERIAEETGELQKQ 127
           D      + + +++I  +  + +K 
Sbjct: 340 DKAIQAELLKVKQKIKAQK-DKEKA 363

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 64.4 bits (157), Expect = 8e-13
 Identities = 13/126 (10%), Positives = 36/126 (28%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
               L       +    ++ A  ++     +    A  F         L  + +A+   +
Sbjct: 17  TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYS 76

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
               ++ +  +  +  A   ++L + + A+       +LA        L       +   
Sbjct: 77  YGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV 136

Query: 121 TGELQK 126
           T    +
Sbjct: 137 TARKDR 142

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 11/81 (13%), Positives = 25/81 (30%)

Query: 25  YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84
            +    +S ++ E          +   + +A         L+   ++ +         L 
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 85  EYETAKVALEKGASLAPGDSR 105
            YE A  +   GA +   + R
Sbjct: 67  LYEQALQSYSYGALMDINEPR 87

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 65.9 bits (161), Expect = 8e-13
 Identities = 14/110 (12%), Positives = 38/110 (34%), Gaps = 6/110 (5%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQA-SIKLQNFTEAVADANRAIELEPSMSKAYWRK 76
            + A  +Y + +++  ++            +  +   + +    + +     M  A +R 
Sbjct: 104 EKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRD 163

Query: 77  ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQK 126
             + +    YE A+ +L+K     P       L     ++I     E+ +
Sbjct: 164 GLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL-----DKILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 54.4 bits (131), Expect = 8e-09
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 1/88 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ AY  Y + ++ +PN+ +     A+  +      +A+    + ++LE     A     
Sbjct: 70  YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLG 129

Query: 78  TACMKLEEYETAKV-ALEKGASLAPGDS 104
                  E E  K+    K  S      
Sbjct: 130 NYYYLTAEQEKKKLETDYKKLSSPTKMQ 157

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 16/103 (15%)

Query: 18  FELAYDLYSQAIEISPNSAELF----------------ADRAQASIKLQNFTEAVADANR 61
              A   + Q I ++ +  E++                 + A A  K +N+ +A      
Sbjct: 20  NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE 79

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
            ++  P+        A   +   + + A    EK   L   + 
Sbjct: 80  LLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 4/53 (7%), Positives = 14/53 (26%)

Query: 16  DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS 68
           +  +   +   + +               + +    + +A     + I   PS
Sbjct: 137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 16/84 (19%), Positives = 28/84 (33%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
             LA   Y  A++      +++           NF  A+    + I    +  K ++   
Sbjct: 90  DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG 149

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            A    +EY  A  +  K   L P
Sbjct: 150 QAYYYNKEYVKADSSFVKVLELKP 173

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 61.1 bits (149), Expect = 7e-11
 Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 3/87 (3%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR---AIELEPSMSKAYW 74
           +  A +++++      NS  ++  RA    +L  +  A  D       +    + S  + 
Sbjct: 19  YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFE 78

Query: 75  RKATACMKLEEYETAKVALEKGASLAP 101
                 MK  +   A    +       
Sbjct: 79  YYGKILMKKGQDSLAIQQYQAAVDRDT 105

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 61.1 bits (149), Expect = 9e-11
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F LA     + I  +    ++F +  QA    + + +A +   + +EL+P++   Y  +A
Sbjct: 124 FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRA 183

Query: 78  TACMKL---EEYETAKVALEKGASLAPGDSRFTN 108
            A        +   AK   EK   +         
Sbjct: 184 RANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK 217

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 58.1 bits (141), Expect = 7e-10
 Identities = 10/84 (11%), Positives = 26/84 (30%)

Query: 21  AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80
             + Y   +  +   +  F    +  +K    + A+     A++ + +    Y +  +  
Sbjct: 59  DIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYF 118

Query: 81  MKLEEYETAKVALEKGASLAPGDS 104
                +  A   +EK       D 
Sbjct: 119 YNKGNFPLAIQYMEKQIRPTTTDP 142

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 11/98 (11%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFT---EAVADANRAIELEPSMSK--- 71
           +  A   + + +E+ PN    +  RA+A+      T    A     + IE+         
Sbjct: 158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK 217

Query: 72  -----AYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
                A    A       +   A  A +   +L P + 
Sbjct: 218 DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK 255

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALE 94
          + ++    A    K  N+ EA+   N+    + +    Y R+A    +L +Y+ A+  +E
Sbjct: 2  NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61

Query: 95 K 95
           
Sbjct: 62 T 62

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 14/80 (17%), Positives = 23/80 (28%), Gaps = 8/80 (10%)

Query: 15  DDYFELAYDLYSQAIEISPNS--------AELFADRAQASIKLQNFTEAVADANRAIELE 66
           D    LA   Y + IE+             E     A      ++  +A A     + L+
Sbjct: 192 DTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251

Query: 67  PSMSKAYWRKATACMKLEEY 86
           P+  KA             +
Sbjct: 252 PTNKKAIDGLKMKLEHHHHH 271

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 65.6 bits (161), Expect = 5e-12
 Identities = 16/87 (18%), Positives = 30/87 (34%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + A + Y  A+ + P+  + + + A A +   +   AV     A++  P +        
Sbjct: 83  LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG 142

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
                L   E AK    K     P  +
Sbjct: 143 NLLKALGRLEEAKACYLKAIETQPNFA 169

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.9 bits (159), Expect = 9e-12
 Identities = 17/86 (19%), Positives = 31/86 (36%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + +    + AI+ +P  AE +++      +     EA+     A+ L+P     Y   A
Sbjct: 49  LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 108

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
            A +   + E A  A        P  
Sbjct: 109 AALVAAGDMEGAVQAYVSALQYNPDL 134

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 18/84 (21%), Positives = 38/84 (45%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A D Y+ A+ + P  A+   + A    +  N  EAV    +A+E+ P  + A+   A
Sbjct: 287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
           +   +  + + A +  ++   ++P
Sbjct: 347 SVLQQQGKLQEALMHYKEAIRISP 370

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 23/84 (27%), Positives = 34/84 (40%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F+ A   Y +A+ +SPN A +  + A    +      A+    RAIEL+P    AY   A
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            A  +      A+        L P
Sbjct: 279 NALKEKGSVAEAEDCYNTALRLCP 302

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.2 bits (152), Expect = 6e-11
 Identities = 20/87 (22%), Positives = 35/87 (40%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A   Y +AIE  PN A  +++             A+    +A+ L+P+   AY    
Sbjct: 151 LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG 210

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
               +   ++ A  A  +  SL+P  +
Sbjct: 211 NVLKEARIFDRAVAAYLRALSLSPNHA 237

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.8 bits (151), Expect = 9e-11
 Identities = 21/84 (25%), Positives = 33/84 (39%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A   Y  A++ +P+   + +D       L    EA A   +AIE +P+ + A+    
Sbjct: 117 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG 176

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                  E   A    EK  +L P
Sbjct: 177 CVFNAQGEIWLAIHHFEKAVTLDP 200

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.8 bits (151), Expect = 1e-10
 Identities = 17/86 (19%), Positives = 33/86 (38%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
             LA   + +A+ + PN  + + +      + + F  AVA   RA+ L P+ +  +   A
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
               +    + A     +   L P  
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIELQPHF 270

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.4 bits (150), Expect = 1e-10
 Identities = 21/87 (24%), Positives = 37/87 (42%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +LA D Y +AIE+ P+  + + + A A  +  +  EA    N A+ L P+ + +    A
Sbjct: 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
               +    E A     K   + P  +
Sbjct: 313 NIKREQGNIEEAVRLYRKALEVFPEFA 339

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 60.2 bits (147), Expect = 3e-10
 Identities = 13/86 (15%), Positives = 28/86 (32%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           FE A     Q     P++  +    +    + +    +   +  AI+  P +++AY    
Sbjct: 15  FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLG 74

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
               +  + + A         L P  
Sbjct: 75  NVYKERGQLQEAIEHYRHALRLKPDF 100

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 57.2 bits (139), Expect = 3e-09
 Identities = 16/68 (23%), Positives = 30/68 (44%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A  LY +A+E+ P  A   ++ A    +     EA+     AI + P+ + AY    
Sbjct: 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380

Query: 78  TACMKLEE 85
               ++++
Sbjct: 381 NTLKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 8/70 (11%), Positives = 21/70 (30%), Gaps = 1/70 (1%)

Query: 41  DRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100
           + A    +  +F  A     +    EP  +      ++   +    + +           
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 101 PGDSR-FTNL 109
           P  +  ++NL
Sbjct: 64  PLLAEAYSNL 73

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Length = 125

 Score = 61.5 bits (149), Expect = 6e-12
 Identities = 23/145 (15%), Positives = 53/145 (36%), Gaps = 30/145 (20%)

Query: 184 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVS-IDVPGEEAYHFQPRLFGKIIPAKCRY 242
           Y + + V +    +   +K+V V+F +  L+ S +       +  +  LF  I P   ++
Sbjct: 9   YDRRDYVFIEFCVED--SKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKH 66

Query: 243 EVLSTKVEIRLAKAEPIQ-WSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDK 301
           +     +   L K E  Q W  L   +                 +  + S     VD++ 
Sbjct: 67  KRTDRSILCCLRKGESGQSWPRLTKERA----------------KLNWLS-----VDFNN 105

Query: 302 LEAQVKKEEKEEKLDGDAALNKFFQ 326
                 K+ +++  +  +  ++F +
Sbjct: 106 W-----KDWEDDSDEDMSNFDRFSE 125

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.6 bits (159), Expect = 9e-12
 Identities = 69/432 (15%), Positives = 121/432 (28%), Gaps = 139/432 (32%)

Query: 5   LEKKAKEA---FIDDYFELAYD------------------LYSQAIEISPNSAELFAD-- 41
           L  K +E    F+++   + Y                   +Y +  +   N  ++FA   
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 42  --RAQASIKLQNF--------------------TEAVADANRAIELEPSMS-KAYWRKAT 78
             R Q  +KL+                      T    D   + +++  M  K +W    
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW---- 186

Query: 79  ACMKLEEYETAKVALEKGASL--------APGDSRFTNLIKECEERIAEETGELQKQPLE 130
             + L+   + +  LE    L               +N+        AE    L+ +P E
Sbjct: 187 --LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 131 TGPTNV------VSTNNVQPATNISS-----TEDVETVMDVSNEAAMAAPARPKYRFQIL 179
               N       V       A N+S      T   + V D        + A   +     
Sbjct: 245 ----NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ-VTDF------LSAATTTHISLDH 293

Query: 180 MHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSI-DVPGEEAYHFQPRLFGKIIPA 238
                   E  V ++  K               L     D+P  E     PR    II  
Sbjct: 294 HSMTLTPDE--VKSLLLK--------------YLDCRPQDLP-REVLTTNPRRLS-IIAE 335

Query: 239 KCR-------------YEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVN-PPSVSGS 284
             R              + L+T +E  L   EP ++  + F + +V P   + P  +   
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-FDRLSVFPPSAHIPTILLS- 393

Query: 285 PRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQE-------IYAD--ADED 335
                       + W  +           KL   + + K  +E       IY +     +
Sbjct: 394 ------------LIWFDVIKSD-VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440

Query: 336 TRRAMKKSFVES 347
              A+ +S V+ 
Sbjct: 441 NEYALHRSIVDH 452

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 36/288 (12%), Positives = 80/288 (27%), Gaps = 94/288 (32%)

Query: 6   EKKAKEAFIDDYFELAY-DLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE 64
             + K   +  Y +    DL  + +  +P    + A+       +++             
Sbjct: 300 PDEVKSLLLK-YLDCRPQDLPREVLTTNPRRLSIIAES------IRDG------------ 340

Query: 65  LEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR--FTNL-IKECEERIAEET 121
              +     W+    C KL      + +L     L P + R  F  L +      I    
Sbjct: 341 --LATWD-NWKHVN-CDKLTT--IIESSLN---VLEPAEYRKMFDRLSVFPPSAHI---- 387

Query: 122 GELQKQPLETGPTNVVST--NNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRFQIL 179
                      PT ++S    +           DV  V++  ++ ++      +    I 
Sbjct: 388 -----------PTILLSLIWFD-------VIKSDVMVVVNKLHKYSLVEKQPKESTISI- 428

Query: 180 MHEFY---QKPEEVVVTVFAKGIPAKNVTVDF-GEQILSVSID------VPGEEAYHFQ- 228
               Y   +   E    +    +   N+   F  + ++   +D      +     +H + 
Sbjct: 429 -PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI----GHHLKN 483

Query: 229 ----------PRLF-------GKII----PAKCRYEVLSTKVEIRLAK 255
                       +F        KI            +L+T  +++  K
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 65.2 bits (159), Expect = 9e-12
 Identities = 14/86 (16%), Positives = 23/86 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 88  VQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHD 147

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 148 GGKQALETVQALLPVLCQAHGLTPEQ 173

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 12/86 (13%), Positives = 21/86 (24%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 394 VQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 453

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE         +   +    D
Sbjct: 454 GGRPALESIVAQLSRPDPALAALTND 479

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 64.8 bits (158), Expect = 1e-11
 Identities = 14/87 (16%), Positives = 23/87 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 292 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHD 351

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
                LE  +     L +   L P   
Sbjct: 352 GGKQALETVQRLLPVLCQAHGLTPEQV 378

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 14/84 (16%), Positives = 23/84 (27%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 360 VQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHD 419

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                LE  +     L +   L P
Sbjct: 420 GGKQALETVQRLLPVLCQAHGLTP 443

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.8 bits (153), Expect = 5e-11
 Identities = 14/86 (16%), Positives = 24/86 (27%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A    +
Sbjct: 224 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNS 283

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 284 GGKQALETVQRLLPVLCQAHGLTPQQ 309

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 14/87 (16%), Positives = 23/87 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 326 VQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNG 385

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
                LE  +     L +   L P   
Sbjct: 386 GGKQALETVQRLLPVLCQAHGLTPEQV 412

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 14/87 (16%), Positives = 23/87 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 156 VQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 215

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
                LE  +     L +   L P   
Sbjct: 216 GGKQALETVQRLLPVLCQAHGLTPQQV 242

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 14/86 (16%), Positives = 23/86 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 190 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 249

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 250 GGKQALETVQRLLPVLCQAHGLTPQQ 275

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 14/86 (16%), Positives = 24/86 (27%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A  +     L+     +    +A  L P    A     
Sbjct: 258 VQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 317

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 318 GGKQALETVQRLLPVLCQAHGLTPQQ 343

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 14/86 (16%), Positives = 23/86 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 122 VQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNG 181

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 182 GGKQALETVQRLLPVLCQAHGLTPQQ 207

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 56.7 bits (137), Expect = 6e-09
 Identities = 13/81 (16%), Positives = 21/81 (25%)

Query: 24  LYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83
           L    + ++P      A        L+     +    +A  L P    A          L
Sbjct: 60  LTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQAL 119

Query: 84  EEYETAKVALEKGASLAPGDS 104
           E  +     L +   L P   
Sbjct: 120 ETVQRLLPVLCQAHGLTPEQV 140

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.1 bits (112), Expect = 7e-06
 Identities = 13/85 (15%), Positives = 22/85 (25%)

Query: 19  ELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78
            +A +L    +++        A R   +          A     + L P    A      
Sbjct: 21  TVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDG 80

Query: 79  ACMKLEEYETAKVALEKGASLAPGD 103
               LE  +     L +   L P  
Sbjct: 81  GKQALETVQRLLPVLCQAHGLTPQQ 105

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 59.8 bits (146), Expect = 2e-11
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP--SMSKAYWR 75
           +  + DL+ +AI++ P  ++ +  + +A   L+ + EAV   N  I +         +  
Sbjct: 22  YTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81

Query: 76  KATACMKLEEYETAKVALEKGASLAPGD 103
           KA A   +E  E      E  A L    
Sbjct: 82  KADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 49.0 bits (118), Expect = 1e-07
 Identities = 17/71 (23%), Positives = 29/71 (40%)

Query: 31  ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK 90
           +   + E +           N+TE++    +AI+L+P  SK +  K  A   LE YE A 
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 91  VALEKGASLAP 101
                  ++  
Sbjct: 61  DCYNYVINVIE 71

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 59.9 bits (145), Expect = 3e-11
 Identities = 13/110 (11%), Positives = 31/110 (28%)

Query: 5   LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE 64
           L   A   +    +E A+ ++     +    +  F         +  +  A+   +    
Sbjct: 24  LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83

Query: 65  LEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114
           ++    +  +  A   ++  E   A+  L     L      F  L     
Sbjct: 84  MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVS 133

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 16/96 (16%), Positives = 31/96 (32%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
                   +   EIS ++ E     A    +   + +A         L+   S+ +    
Sbjct: 3   LGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLG 62

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113
                + +Y+ A  +   GA +   + RF     EC
Sbjct: 63  ACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 13/73 (17%), Positives = 23/73 (31%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++LA   YS    +           A+  ++     EA +    A EL  +  +      
Sbjct: 71  YDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST 130

Query: 78  TACMKLEEYETAK 90
                LE  +  K
Sbjct: 131 RVSSMLEAIKLKK 143

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 62.9 bits (153), Expect = 5e-11
 Identities = 18/107 (16%), Positives = 43/107 (40%), Gaps = 2/107 (1%)

Query: 7   KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE 66
              + A   ++F+ A  L  +        A  +A+   A  KL+ +  A+   N+ + L 
Sbjct: 489 SDMQTA--INHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546

Query: 67  PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113
            + +  +   A   +  +    A   L +  +++P +   ++L+K  
Sbjct: 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 59.5 bits (144), Expect = 7e-10
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 7/94 (7%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE-------PSMS 70
             LA +    +  +      L  +    +    +   A+     A+ L           +
Sbjct: 457 ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA 516

Query: 71  KAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
             +     A  KL+ Y+ A  AL +G  L+  D+
Sbjct: 517 ATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDA 550

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 58.7 bits (142), Expect = 1e-09
 Identities = 9/84 (10%), Positives = 32/84 (38%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F     + ++ +EI P + +++     +  +     +    +N  ++  P  +  +    
Sbjct: 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVG 380

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
              + + +   A+    K +++ P
Sbjct: 381 IYYLCVNKISEARRYFSKSSTMDP 404

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 57.2 bits (138), Expect = 4e-09
 Identities = 14/86 (16%), Positives = 31/86 (36%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
               Y + +  ++  P  A  +       + +   +EA    +++  ++P    A+   A
Sbjct: 355 KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFA 414

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
            +     E++ A  A    A L  G 
Sbjct: 415 HSFAIEGEHDQAISAYTTAARLFQGT 440

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 14/88 (15%), Positives = 26/88 (29%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A   +S++  + P     +   A +        +A++    A  L       Y    
Sbjct: 389 ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG 448

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR 105
              M+L     A   L+   +L   D  
Sbjct: 449 MQHMQLGNILLANEYLQSSYALFQYDPL 476

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 10/84 (11%), Positives = 21/84 (25%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + A   Y+ A  +   +   +       ++L N   A      +  L            
Sbjct: 423 HDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELG 482

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                  + +TA    +    L  
Sbjct: 483 VVAFNKSDMQTAINHFQNALLLVK 506

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 1/86 (1%)

Query: 16  DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75
           D    A D Y  +I     S++L   +A        F + +A   + +E++P     Y  
Sbjct: 286 DELRRAED-YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPL 344

Query: 76  KATACMKLEEYETAKVALEKGASLAP 101
              +  +  E     +         P
Sbjct: 345 HLASLHESGEKNKLYLISNDLVDRHP 370

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 60.8 bits (148), Expect = 9e-11
 Identities = 21/86 (24%), Positives = 36/86 (41%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
             LA + +SQA+ I P+  E+F        +  NF  A    +  +EL+P+ + A+  + 
Sbjct: 59  RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
            A       + A+  L       P D
Sbjct: 119 IALYYGGRDKLAQDDLLAFYQDDPND 144

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 1/84 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F+ AY+ +   +E+ P       +R  A         A  D     + +P+         
Sbjct: 93  FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 152

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            A  KL+E + AK  L++    + 
Sbjct: 153 LAEQKLDEKQ-AKEVLKQHFEKSD 175

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 4/88 (4%)

Query: 18  FELAYDLYSQAIE----ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY 73
            E+      Q +          A+L  +R      L     A  D ++A+ + P M + +
Sbjct: 21  QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVF 80

Query: 74  WRKATACMKLEEYETAKVALEKGASLAP 101
                   +   ++ A  A +    L P
Sbjct: 81  NYLGIYLTQAGNFDAAYEAFDSVLELDP 108

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 7/78 (8%), Positives = 21/78 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E      +    ++ + +E      +  + L +   A A    A+         +    
Sbjct: 197 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYAL 256

Query: 78  TACMKLEEYETAKVALEK 95
                L + +      ++
Sbjct: 257 LELSLLGQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 3/86 (3%)

Query: 21  AYDLYSQAIEISPNSAELFADRAQASIKL---QNFTEAVADANRAIELEPSMSKAYWRKA 77
           A ++  Q  E S      +         +          ADA     L   +S+  +   
Sbjct: 163 AKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLG 222

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
              + L + ++A    +   +    +
Sbjct: 223 KYYLSLGDLDSATALFKLAVANNVHN 248

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 61.6 bits (149), Expect = 1e-10
 Identities = 15/105 (14%), Positives = 39/105 (37%), Gaps = 1/105 (0%)

Query: 6   EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFT-EAVADANRAIE 64
           +   K+  + +  E       + +  +   A+    + +A     +++ EA    ++A++
Sbjct: 72  DAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK 131

Query: 65  LEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL 109
           LEP + +A+ +      K  +  +A        +         NL
Sbjct: 132 LEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNL 176

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 48.9 bits (116), Expect = 1e-06
 Identities = 13/75 (17%), Positives = 31/75 (41%)

Query: 21  AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80
           AY    +    + ++ +L  +RA      +++ EA+   ++A  L+P+  +   R+    
Sbjct: 243 AYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLL 302

Query: 81  MKLEEYETAKVALEK 95
             L    +   +  K
Sbjct: 303 EFLSRLTSLLESKGK 317

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 12/107 (11%), Positives = 31/107 (28%), Gaps = 11/107 (10%)

Query: 7   KKAKEAFIDDYFELAYDLYSQAIEISPNSAE--------LFADRAQASIKLQNFTEAVAD 58
           +         +   +      A+++                +         +   +A++ 
Sbjct: 184 QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243

Query: 59  ANRAIELEPSMSK---AYWRKATACMKLEEYETAKVALEKGASLAPG 102
             +A +++   S     +  +AT     E Y  A     + A+L P 
Sbjct: 244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA 290

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 45.8 bits (108), Expect = 1e-05
 Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 16  DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75
           DY   A  L S+A+++ P   E +    +   K  + T A    + A+    +   +   
Sbjct: 117 DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQN 175

Query: 76  KATACMKLEEYETAKVALEKGASLA 100
            +    +L+     + +     S+ 
Sbjct: 176 LSMVLRQLQTDSGDEHSRHVMDSVR 200

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 19/124 (15%), Positives = 34/124 (27%), Gaps = 5/124 (4%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
                    + + + P   E  A   +     Q   EA     +A +  P          
Sbjct: 39  TTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLG 98

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR-FTNLI----KECEERIAEETGELQKQPLETG 132
            A     + E A  A  +   L P +      L+    + C+ R  +      +  +  G
Sbjct: 99  HALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158

Query: 133 PTNV 136
              V
Sbjct: 159 VGAV 162

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 60.6 bits (147), Expect = 3e-10
 Identities = 15/86 (17%), Positives = 27/86 (31%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
                     A+   P     +   A A + + + T       R + L P   +A  R  
Sbjct: 5   GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                 + +  A V L++ +  AP  
Sbjct: 65  RVRWTQQRHAEAAVLLQQASDAAPEH 90

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 16/84 (19%), Positives = 34/84 (40%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A   Y +A+E+  ++A  +       +  + + EA     +A+         ++   
Sbjct: 73  LERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLG 132

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
           T  +KLE+ + A   L++   L  
Sbjct: 133 TVLVKLEQPKLALPYLQRAVELNE 156

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 21/84 (25%), Positives = 39/84 (46%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           +E A + +++AIE +   A  + + A     +     A+A  ++A+EL+ S + AY+   
Sbjct: 39  YEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAG 98

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
              +  E Y+ AK   EK      
Sbjct: 99  NVYVVKEMYKEAKDMFEKALRAGM 122

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 58.3 bits (142), Expect = 5e-10
 Identities = 15/84 (17%), Positives = 33/84 (39%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A D++ +A+     + +LF       +KL+    A+    RA+EL  + ++A ++  
Sbjct: 107 YKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG 166

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                    + A           P
Sbjct: 167 MCLANEGMLDEALSQFAAVTEQDP 190

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 17/84 (20%), Positives = 30/84 (35%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +LA     +A+E++ N  E                EA++      E +P  + A++   
Sbjct: 141 PKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAG 200

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                 E  E A   L+K   + P
Sbjct: 201 VTYAYKENREKALEMLDKAIDIQP 224

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 4/81 (4%)

Query: 25  YSQAIEISPNSAELFADRAQA----SIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80
           +  +  + P  + + +           +  ++ +A     +AIE     +  Y   A   
Sbjct: 8   HHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLL 67

Query: 81  MKLEEYETAKVALEKGASLAP 101
             + E E A    +K   L  
Sbjct: 68  SSVNELERALAFYDKALELDS 88

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 12/69 (17%), Positives = 26/69 (37%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + A   ++   E  P  A+ F +        +N  +A+   ++AI+++P    A   K 
Sbjct: 175 LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234

Query: 78  TACMKLEEY 86
                   +
Sbjct: 235 LLGHHHHHH 243

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 9/96 (9%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSK------ 71
            +LA   +SQA+ I+P    +  +    + +   +  A      A+E   ++        
Sbjct: 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK 234

Query: 72  ---AYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
                      C KL++Y  A     +   L P ++
Sbjct: 235 WEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA 270

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 9/105 (8%)

Query: 18  FELAYDLYSQAIEI---------SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS 68
           ++ A   +  A+E                L  +      KL+ + EA+    +A+ L P 
Sbjct: 209 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 268

Query: 69  MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113
            +  Y         +  +E A         L   D+    ++  C
Sbjct: 269 NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHC 313

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 13/91 (14%), Positives = 25/91 (27%)

Query: 14  IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY 73
           +    E A    S+A  +       +     +        +A+A    A +L        
Sbjct: 103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPM 162

Query: 74  WRKATACMKLEEYETAKVALEKGASLAPGDS 104
                        + A+    +  S+AP D 
Sbjct: 163 LYIGLEYGLTNNSKLAERFFSQALSIAPEDP 193

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 13/77 (16%), Positives = 27/77 (35%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           +  A D + QA+ + P +A  ++        + NF  AV   + A+ L    + +     
Sbjct: 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLG 311

Query: 78  TACMKLEEYETAKVALE 94
                      A +  +
Sbjct: 312 HCIEMYIGDSEAYIGAD 328

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 10/87 (11%), Positives = 21/87 (24%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + A   Y  A ++                   N   A    ++A+ + P          
Sbjct: 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVG 200

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
               +  E++TA+              
Sbjct: 201 VVAFQNGEWKTAEKWFLDALEKIKAIG 227

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 1/85 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F++ Y L S  +E  P  A          ++L    E    +++ ++L PS   +++   
Sbjct: 38  FKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97

Query: 78  TACMKL-EEYETAKVALEKGASLAP 101
              + +  + E A+  L K  +L  
Sbjct: 98  CYYLMVGHKNEHARRYLSKATTLEK 122

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 9/85 (10%), Positives = 28/85 (32%)

Query: 17  YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76
           Y + +  +  ++++    + ++    A+      +F       +  +E +P  +      
Sbjct: 3   YNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVH 62

Query: 77  ATACMKLEEYETAKVALEKGASLAP 101
               ++L +         K   L P
Sbjct: 63  IGTLVELNKANELFYLSHKLVDLYP 87

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 57.1 bits (138), Expect = 4e-10
 Identities = 12/98 (12%), Positives = 26/98 (26%)

Query: 7   KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE 66
             A + +     E A   +         + +     A      + F +A      A  L 
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100

Query: 67  PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
            +     +      ++L+    AK   E     +  + 
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 11/102 (10%), Positives = 22/102 (21%), Gaps = 1/102 (0%)

Query: 4   DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAI 63
             E ++    + D    +         I  +  +     A          EA        
Sbjct: 5   ITENESISTAVIDAIN-SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC 63

Query: 64  ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105
             +          A      E+++ A        +L   D  
Sbjct: 64  IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT 105

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 60.2 bits (145), Expect = 5e-10
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 1/94 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + A   Y +AI ISP  A+ +++      ++Q+   A+    RAI++ P+ + A+   A
Sbjct: 59  LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 118

Query: 78  TACMKLEEYETAKVALEKGASLAPG-DSRFTNLI 110
           +          A  +      L P     + NL 
Sbjct: 119 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 57.9 bits (139), Expect = 3e-09
 Identities = 18/87 (20%), Positives = 36/87 (41%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A  LY +A+E+ P  A   ++ A    +     EA+     AI + P+ + AY    
Sbjct: 25  IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
               ++++ + A     +   + P  +
Sbjct: 85  NTLKEMQDVQGALQCYTRAIQINPAFA 111

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 52.1 bits (124), Expect = 2e-07
 Identities = 20/84 (23%), Positives = 38/84 (45%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + A   Y++AI+I+P  A+  ++ A       N  EA+A    A++L+P    AY   A
Sbjct: 93  VQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                + ++      ++K  S+  
Sbjct: 153 HCLQIVCDWTDYDERMKKLVSIVA 176

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 14/72 (19%), Positives = 31/72 (43%)

Query: 32  SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV 91
            P  A+   + A    +  N  EAV    +A+E+ P  + A+   A+   +  + + A +
Sbjct: 5   CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64

Query: 92  ALEKGASLAPGD 103
             ++   ++P  
Sbjct: 65  HYKEAIRISPTF 76

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 56.7 bits (138), Expect = 8e-10
 Identities = 14/84 (16%), Positives = 27/84 (32%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           +  A  L  Q  +      ++      A +K            R++   P   K      
Sbjct: 24  YSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLG 83

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
              +++++Y+ A   L K A   P
Sbjct: 84  LTYVQVQKYDLAVPLLIKVAEANP 107

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 53.6 bits (130), Expect = 1e-08
 Identities = 21/87 (24%), Positives = 36/87 (41%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++LA  L  +  E +P +  +      A   L  F EA+     A+ L P+  K +   A
Sbjct: 92  YDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIA 151

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
            +  ++  +E A    +K   L  G S
Sbjct: 152 FSYEQMGRHEEALPHFKKANELDEGAS 178

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 52.5 bits (127), Expect = 2e-08
 Identities = 13/84 (15%), Positives = 33/84 (39%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +   +L  +++  +P++ ++        +++Q +  AV    +  E  P      +R  
Sbjct: 58  VDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLG 117

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            A   L  ++ A  + +    L P
Sbjct: 118 VALDNLGRFDEAIDSFKIALGLRP 141

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 42.8 bits (102), Expect = 4e-05
 Identities = 13/56 (23%), Positives = 25/56 (44%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY 73
           F+ A D +  A+ + PN  ++    A +  ++    EA+    +A EL+   S   
Sbjct: 126 FDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVEL 181

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.1 bits (95), Expect = 3e-04
 Identities = 10/69 (14%), Positives = 23/69 (33%)

Query: 33  PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVA 92
                 + D+  +  K   +++AV    +  + +            A +K    +     
Sbjct: 5   DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL 64

Query: 93  LEKGASLAP 101
           LE+  + AP
Sbjct: 65  LERSLADAP 73

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 58.5 bits (142), Expect = 9e-10
 Identities = 17/87 (19%), Positives = 38/87 (43%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A     +A+E+ P+ A+L+              EA+   NRA+++ P   +  +  A
Sbjct: 188 YDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA 247

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
            +   + +Y+ A   L +   +  G +
Sbjct: 248 VSYSNMSQYDLAAKQLVRAIYMQVGGT 274

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 12/84 (14%), Positives = 23/84 (27%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A   +    + +P   E +        + +    A+   N A  L+P     +   A
Sbjct: 37  LAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 96

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            +         A  +L       P
Sbjct: 97  VSHTNEHNANAALASLRAWLLSQP 120

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 21/88 (23%), Positives = 36/88 (40%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           +     L   A+E++PN A+L A          N+  A A+  RA+EL P  ++ + +  
Sbjct: 154 YRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLG 213

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR 105
                    + A  A  +   + PG  R
Sbjct: 214 ATLANGNRPQEALDAYNRALDINPGYVR 241

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 16/101 (15%), Positives = 26/101 (25%), Gaps = 15/101 (14%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
             LA    + A  + P    + A  A +     N   A+A     +  +P   +      
Sbjct: 71  DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNL 130

Query: 78  TAC---------------MKLEEYETAKVALEKGASLAPGD 103
            A                    EY   +  L     + P D
Sbjct: 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND 171

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 15/102 (14%)

Query: 17  YFELAYDLYSQAIEISPNSAELFADRAQASI---------------KLQNFTEAVADANR 61
               A       +   P   +L +   QA +                   + E     + 
Sbjct: 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA 163

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD 103
           A+E+ P+ ++ +            Y++A   L +   L P D
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD 205

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 16/79 (20%), Positives = 25/79 (31%)

Query: 25  YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84
           Y           E   +   + +KL N  EA        +  P   +A+        + E
Sbjct: 10  YPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENE 69

Query: 85  EYETAKVALEKGASLAPGD 103
           +   A +AL     L P D
Sbjct: 70  KDGLAIIALNHARMLDPKD 88

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 12/77 (15%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + A D Y++A++I+P    +  + A +   +  +  A     RAI ++   +      +
Sbjct: 222 PQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEAS 281

Query: 78  TACMKLEEYETAKVALE 94
                   ++  ++ L 
Sbjct: 282 RE-ATRSMWDFFRMLLN 297

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 20/114 (17%), Positives = 42/114 (36%), Gaps = 4/114 (3%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQA---SIKLQNFTEAVADANRAIELEPSMSKAYW 74
           +  +   Y QA+++   +AEL+A  A             +  A  ++A+ L+ +   A  
Sbjct: 60  YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119

Query: 75  RKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE-RIAEETGELQKQ 127
             A+       Y  A    +K   L       T L++     ++ +   +L+  
Sbjct: 120 LLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRSDLEHH 173

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 12/91 (13%), Positives = 33/91 (36%), Gaps = 3/91 (3%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E         I  +P ++E +A   +  +   +++ ++    +A++L    ++ Y   A
Sbjct: 26  PEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALA 85

Query: 78  TACMKLEEY---ETAKVALEKGASLAPGDSR 105
           T              +  ++K  +L   +  
Sbjct: 86  TVLYYQASQHMTAQTRAMIDKALALDSNEIT 116

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.1 bits (140), Expect = 2e-09
 Identities = 14/84 (16%), Positives = 24/84 (28%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P+     A        L+     +    +A  L P    A     
Sbjct: 310 VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 369

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                LE  +     L +   L P
Sbjct: 370 GGKQALETVQRLLPVLCQAHGLTP 393

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.3 bits (138), Expect = 4e-09
 Identities = 19/138 (13%), Positives = 38/138 (27%), Gaps = 2/138 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P+     A        L+     +    +A  L P    A     
Sbjct: 276 VQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHD 335

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR--FTNLIKECEERIAEETGELQKQPLETGPTN 135
                LE  +     L +   L P       +N   +      +    +  Q     P  
Sbjct: 336 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 395

Query: 136 VVSTNNVQPATNISSTED 153
           VV+  +      + + + 
Sbjct: 396 VVAIASNGGKQALETVQR 413

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.3 bits (138), Expect = 5e-09
 Identities = 14/86 (16%), Positives = 23/86 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 208 VQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNI 267

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 268 GGKQALETVQRLLPVLCQAHGLTPDQ 293

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 14/86 (16%), Positives = 23/86 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  + P+     A        L+     +    +A  L P    A     
Sbjct: 242 MQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHG 301

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 302 GGKQALETVQRLLPVLCQAHGLTPDQ 327

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 12/86 (13%), Positives = 22/86 (25%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  Q   ++P      A        L+   + +    +A  L P    A     
Sbjct: 445 VQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNI 504

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                L   +     L +   L P  
Sbjct: 505 GGKQALATVQRLLPVLCQAHGLTPDQ 530

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.7 bits (131), Expect = 3e-08
 Identities = 13/84 (15%), Positives = 22/84 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 615 VQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 674

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                LE  +     L +   L  
Sbjct: 675 GGKQALETVQRLLPVLCQAHGLTQ 698

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.7 bits (131), Expect = 3e-08
 Identities = 13/84 (15%), Positives = 23/84 (27%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P+     A        L+     +    +A  L      A     
Sbjct: 649 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNN 708

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                LE  +     L +   L P
Sbjct: 709 GGKQALETVQRLLPVLCQAHGLTP 732

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.9 bits (129), Expect = 6e-08
 Identities = 18/126 (14%), Positives = 35/126 (27%), Gaps = 2/126 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P+     A        L+     +    +A  L P    A     
Sbjct: 513 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 572

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR--FTNLIKECEERIAEETGELQKQPLETGPTN 135
                LE  +     L +   L         +N+  +      +    +  Q     P  
Sbjct: 573 GGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ 632

Query: 136 VVSTNN 141
           VV+  +
Sbjct: 633 VVAIAS 638

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 16/98 (16%), Positives = 26/98 (26%), Gaps = 4/98 (4%)

Query: 6   EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL 65
              A EA +         L    + ++P      A        L+     +    +A  L
Sbjct: 166 GVTAMEA-VHAS---RNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGL 221

Query: 66  EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD 103
            P+   A          LE  +     L +   L P  
Sbjct: 222 TPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQ 259

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 17/129 (13%), Positives = 33/129 (25%), Gaps = 2/129 (1%)

Query: 17  YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76
             +    +  QA  ++       A        L+     +    +A  L P    A    
Sbjct: 682 TVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 741

Query: 77  ATACMKLEEYETAKVALEKGASLAPGDSR--FTNLIKECEERIAEETGELQKQPLETGPT 134
                 LE  +     L +   L P       +N+  +      +    +  Q       
Sbjct: 742 GGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLA 801

Query: 135 NVVSTNNVQ 143
            VV+  +  
Sbjct: 802 QVVAIASNI 810

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 12/82 (14%), Positives = 23/82 (28%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P+     A        L+     +    +   L P+   A     
Sbjct: 411 VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHD 470

Query: 78  TACMKLEEYETAKVALEKGASL 99
                LE  +     L +   L
Sbjct: 471 GGKQALETVQQLLPVLCQAHGL 492

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.6 bits (123), Expect = 3e-07
 Identities = 13/86 (15%), Positives = 23/86 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++       A        L+     +    +A  L P+   A     
Sbjct: 581 VQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHD 640

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 641 GGKQALETVQRLLPVLCQAHGLTPDQ 666

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.8 bits (121), Expect = 5e-07
 Identities = 14/88 (15%), Positives = 23/88 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P+     A        L      +    +A  L P    A     
Sbjct: 479 VQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNG 538

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR 105
                LE  +     L +   L P    
Sbjct: 539 GGKQALETVQRLLPVLCQAHGLTPDQVV 566

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 1/86 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P+     A        L+     +    +A  L P    A     
Sbjct: 378 VQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHGLTPDQVVAIASHD 436

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 437 GGKQALETVQRLLPVLCQTHGLTPAQ 462

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.2 bits (96), Expect = 6e-04
 Identities = 11/85 (12%), Positives = 20/85 (23%)

Query: 17  YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76
             +    +  Q   ++       A        L+     +    +A  L      A    
Sbjct: 784 TVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASN 843

Query: 77  ATACMKLEEYETAKVALEKGASLAP 101
                 LE  +     L +   L P
Sbjct: 844 IGGKQALETVQRLLPVLCQDHGLTP 868

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 19/84 (22%), Positives = 32/84 (38%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F  A D ++ A+ + P    L+              EAV    RA+E++P   ++ +   
Sbjct: 229 FNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLG 288

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            +C+ L  Y  A        SL  
Sbjct: 289 ISCINLGAYREAVSNFLTALSLQR 312

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 18/84 (21%), Positives = 29/84 (34%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
             +       AI   P  AE +        + +N   A+    R +EL+P+  KA    A
Sbjct: 81  LPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALA 140

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            +       + A  AL+      P
Sbjct: 141 VSYTNTSHQQDACEALKNWIKQNP 164

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 8/109 (7%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDL--------YSQAIEISPNSAELFADRAQASIKLQNF 52
           M  + E+ A+  +I +  E    +        Y    E          +     +K  + 
Sbjct: 22  MQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDL 81

Query: 53  TEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101
              +     AI  +P  ++A+        + E  + A VAL++   L P
Sbjct: 82  PVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 10/78 (12%), Positives = 22/78 (28%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + A     + +E+ PN+ +     A +     +  +A       I+  P        K 
Sbjct: 115 EQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK 174

Query: 78  TACMKLEEYETAKVALEK 95
            +         + V    
Sbjct: 175 GSPGLTRRMSKSPVDSSV 192

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 11/99 (11%), Positives = 32/99 (32%), Gaps = 12/99 (12%)

Query: 17  YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76
           + + A +     I+ +P    L  ++  +    +  +++  D++    ++    +A  + 
Sbjct: 148 HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207

Query: 77  ------------ATACMKLEEYETAKVALEKGASLAPGD 103
                               E+  A  A     ++ P D
Sbjct: 208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED 246

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 3/107 (2%)

Query: 2   ATDLEKKAKEAFID-DYFELAYDLYSQAIEISPNS--AELFADRAQASIKLQNFTEAVAD 58
           +  L ++  ++ +D    E   +LY +A   + +    +L             F  A+  
Sbjct: 176 SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDA 235

Query: 59  ANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105
            N A+ + P     + R        +  E A  A  +   + PG  R
Sbjct: 236 FNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIR 282

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A + Y++A+EI P       +   + I L  + EAV++   A+ L+           
Sbjct: 263 SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPH 322

Query: 78  TA 79
            A
Sbjct: 323 PA 324

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 52.8 bits (128), Expect = 9e-09
 Identities = 24/84 (28%), Positives = 45/84 (53%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A + Y +A+E+ P SAE + +   A  K  ++ EA+    +A+EL+P  ++A++   
Sbjct: 51  YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 110

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            A  K  +Y+ A    +K   L P
Sbjct: 111 NAYYKQGDYDEAIEYYQKALELDP 134

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 50.5 bits (122), Expect = 5e-08
 Identities = 24/84 (28%), Positives = 45/84 (53%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A + Y +A+E+ P SAE + +   A  K  ++ EA+    +A+EL+P  ++A++   
Sbjct: 17  YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 76

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            A  K  +Y+ A    +K   L P
Sbjct: 77  NAYYKQGDYDEAIEYYQKALELDP 100

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 16/103 (15%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAI-ELEPSMSKAYWR- 75
              A   ++++I    + A  +  R     + + +  A+ D   A+ +L  +    Y   
Sbjct: 53  MTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKIL 112

Query: 76  --------------KATACMKLEEYETAKVALEKGASLAPGDS 104
                          A    K EE++ A+  L    S+     
Sbjct: 113 GLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 8/108 (7%)

Query: 20  LAYDL--YSQAIE----ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY 73
           LA D   +  A++    +    + +  +       L+N TEA     R+I  +  ++ AY
Sbjct: 15  LAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAY 74

Query: 74  WRKATACMKLEEYETAKVALEKGASLAPGDSR--FTNLIKECEERIAE 119
           +++     + E+Y+ A   L++      G+    +  L  + +    E
Sbjct: 75  FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE 122

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 53.3 bits (129), Expect = 2e-08
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 1/84 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + A     QA+ +     E+ +  A+  + +    EA+A   +A+E  P       R A
Sbjct: 134 RDKAEASLKQALALEDT-PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYA 192

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
           +A +   + E A  A         
Sbjct: 193 SALLLKGKAEEAARAAALEHHHHH 216

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 48.7 bits (117), Expect = 6e-07
 Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 11/97 (11%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A  L+ +A++ +P   E     A+  +KL     A+ +    +   P     Y   +
Sbjct: 21  YDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80

Query: 78  TACMKLE-----------EYETAKVALEKGASLAPGD 103
            A + L              E A   L+    + P  
Sbjct: 81  EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY 117

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 48.7 bits (117), Expect = 6e-07
 Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 1/84 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A  +   A  ++P  A L   R      L    +A A   +A+ LE +  +     A
Sbjct: 100 LEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT-PEIRSALA 158

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
              + +   + A     K    AP
Sbjct: 159 ELYLSMGRLDEALAQYAKALEQAP 182

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 11/95 (11%), Positives = 29/95 (30%), Gaps = 11/95 (11%)

Query: 18  FELAYDLYSQAIEISPNSAE-----------LFADRAQASIKLQNFTEAVADANRAIELE 66
              A +     +  +P               L+              +A++    A  + 
Sbjct: 55  VNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN 114

Query: 67  PSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101
           P  +  + ++      L E + A+ +L++  +L  
Sbjct: 115 PRYAPLHLQRGLVYALLGERDKAEASLKQALALED 149

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 18/84 (21%), Positives = 36/84 (42%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A D ++ A+ + PN   L+              EAVA   RA+EL+P   ++ +   
Sbjct: 233 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 292

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            +C+ L  +  A     +  ++  
Sbjct: 293 ISCINLGAHREAVEHFLEALNMQR 316

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 15/84 (17%), Positives = 26/84 (30%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A  L+  A++  P   E +        + +    A++   R +EL+P    A    A
Sbjct: 80  LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALA 139

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            +         A   L       P
Sbjct: 140 VSFTNESLQRQACEILRDWLRYTP 163

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 11/99 (11%), Positives = 24/99 (24%), Gaps = 15/99 (15%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY---- 73
             LA     + +E+ P++       A +        +A       +   P+ +       
Sbjct: 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE 173

Query: 74  -----------WRKATACMKLEEYETAKVALEKGASLAP 101
                       R   + +    +   K        L P
Sbjct: 174 EGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP 212

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 2/90 (2%)

Query: 18  FELAYDLYSQAIEISPNS--AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75
           F    +L+  A+ + P S   ++             + +AV     A+ + P+    + +
Sbjct: 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNK 256

Query: 76  KATACMKLEEYETAKVALEKGASLAPGDSR 105
                    + E A  A  +   L PG  R
Sbjct: 257 LGATLANGNQSEEAVAAYRRALELQPGYIR 286

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 2/71 (2%)

Query: 25  YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84
           Y +A+E+ P       +   + I L    EAV     A+ ++                + 
Sbjct: 274 YRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI- 332

Query: 85  EYETAKVALEK 95
            + T ++AL  
Sbjct: 333 -WSTLRLALSM 342

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 15/104 (14%), Positives = 27/104 (25%), Gaps = 17/104 (16%)

Query: 17  YFELAYDLYSQAIEISPNSAELFADRAQAS---------------IKLQNFTEAVADANR 61
               A ++    +  +P  A L     + +               +    F E       
Sbjct: 147 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLA 206

Query: 62  AIELEPSMSKA--YWRKATACMKLEEYETAKVALEKGASLAPGD 103
           A+ L+P+                  EY+ A        S+ P D
Sbjct: 207 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND 250

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 12/81 (14%), Positives = 30/81 (37%)

Query: 25  YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84
             +  +    + + +       ++  N  +A     +A+E++PS + A+   A       
Sbjct: 26  PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEM 85

Query: 85  EYETAKVALEKGASLAPGDSR 105
           E + A     K  +    ++R
Sbjct: 86  EPKLADEEYRKALASDSRNAR 106

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 10/84 (11%), Positives = 29/84 (34%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A + + +++ ++ N   +  + A    K + +  A    +   +     +++     
Sbjct: 157 PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGI 216

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                 E+ +TA     +   L P
Sbjct: 217 RLAKVFEDRDTAASYGLQLKRLYP 240

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 19/112 (16%), Positives = 42/112 (37%), Gaps = 8/112 (7%)

Query: 18  FELAYDLYSQAIEIS--PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75
           +E AY    +A + +  P  + +F +    S++++   +A     +++ L  +       
Sbjct: 121 YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALE 180

Query: 76  KATACMKLEEYETAKVALEKGASLAPGDSR-FTNLIKECEERIAEETGELQK 126
            A    K  EY  A+   +  A     ++R     I     R+A+   +   
Sbjct: 181 MADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGI-----RLAKVFEDRDT 227

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 16/78 (20%), Positives = 29/78 (37%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A     +A+EI P+SA+  A  A           A  +  +A+  +   ++      
Sbjct: 53  TEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYG 112

Query: 78  TACMKLEEYETAKVALEK 95
               + + YE A   L +
Sbjct: 113 GFLYEQKRYEEAYQRLLE 130

>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} Length = 150

 Score = 51.5 bits (123), Expect = 3e-08
 Identities = 31/153 (20%), Positives = 55/153 (35%), Gaps = 28/153 (18%)

Query: 184 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSV-SIDVPGEEAYHFQPRLFGKIIPAKCRY 242
            Q+ ++V +TV      AK+++V    Q L   S      E + F   L+GKI+      
Sbjct: 10  AQRSDKVYLTVALPD--AKDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIMTEYR-K 66

Query: 243 EVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKL 302
            V    +   + K E   W+ L  S+          P +               VDW+K 
Sbjct: 67  NVGLRNIIFSIQKEERSWWTRLLKSEE------KPAPYIK--------------VDWNKW 106

Query: 303 EAQVKKEEKEEKLDGDAALNKFFQEIYADADED 335
                 E++E   +  +     F    +++ +D
Sbjct: 107 ----CDEDEEVNSETASDDESAFVNQDSESSDD 135

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 50.5 bits (122), Expect = 3e-08
 Identities = 24/84 (28%), Positives = 47/84 (55%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A + Y +A+E+ PN+AE + +   A  K  ++ EA+    +A+EL+P+ ++A++   
Sbjct: 25  YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG 84

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            A  K  +Y+ A    +K   L P
Sbjct: 85  NAYYKQGDYDEAIEYYQKALELDP 108

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 43.9 bits (105), Expect = 8e-06
 Identities = 19/66 (28%), Positives = 37/66 (56%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A + Y +A+E+ PN+AE + +   A  K  ++ EA+    +A+EL+P+ ++A     
Sbjct: 59  YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118

Query: 78  TACMKL 83
            A  K 
Sbjct: 119 NAKQKQ 124

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 49.2 bits (118), Expect = 6e-08
 Identities = 14/70 (20%), Positives = 25/70 (35%)

Query: 32  SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV 91
            P         AQ  +K  N + A+A     +E +P     Y+       +L+  + A  
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 92  ALEKGASLAP 101
              +G  +A 
Sbjct: 63  TYAQGIEVAR 72

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 2/72 (2%)

Query: 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK- 76
             A  L+ + +E  P+    +    +   +L    +A+    + IE+            
Sbjct: 23 ASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82

Query: 77 -ATACMKLEEYE 87
             A +K E  E
Sbjct: 83 LQDAKLKAEGLE 94

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADA----NRAIELEPSMSKAY 73
            + A D   QAI ++P++  L    A    K++   E   +       A+E  P ++   
Sbjct: 191 SQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVL 250

Query: 74  WRKATACMKLEEYETAKVALEKGASLAPGDS 104
              A    + +E + A   L+K     P ++
Sbjct: 251 RSAAKFYRRKDEPDKAIELLKKALEYIPNNA 281

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 49.9 bits (119), Expect = 6e-07
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 16  DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFT---EAVADANRAIELEPSMSKA 72
           +  E A   + +A+E  P + E  +  A AS +L N+     A+    +AI L P     
Sbjct: 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL 211

Query: 73  YWRKATACMKL----EEYETAKVALEKGASLAPGD 103
               A    K+    EE    +  +E+    APG 
Sbjct: 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV 246

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 19/106 (17%)

Query: 18  FELAYDLYSQAIEISPNSAEL-------------------FADRAQASIKLQNFTEAVAD 58
            + A +L  +A+E  PN+A L                             L+    AVA 
Sbjct: 263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAH 322

Query: 59  ANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
             +A E   ++ +     A+     ++YE A+   +K  S      
Sbjct: 323 LKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV 368

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.4 bits (102), Expect = 8e-05
 Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 12/137 (8%)

Query: 17  YFELAYDLYSQ-AIEISPNSAELFADRAQASIKL--QNFTEAVADANRAIELEPSMSKAY 73
           Y +    +  + +      S EL  +     +K        A     +A+E +P   +  
Sbjct: 116 YVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFT 175

Query: 74  WRKATACMKLE---EYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQ----- 125
              A A  +L+     + A   L +   L P +     L+     ++ EE  E       
Sbjct: 176 SGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKL 235

Query: 126 -KQPLETGPTNVVSTNN 141
            ++ LE  P       +
Sbjct: 236 VEEALEKAPGVTDVLRS 252

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 16/121 (13%), Positives = 35/121 (28%), Gaps = 13/121 (10%)

Query: 21  AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80
              L  +A+E +P   ++    A+   +     +A+    +A+E  P+ +  + +     
Sbjct: 232 GEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC- 290

Query: 81  MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTN 140
                Y      +           R      +  E I      L+K   E         +
Sbjct: 291 -----YRAKVFQVMNLRENGMYGKR------KLLELIGHAVAHLKK-ADEANDNLFRVCS 338

Query: 141 N 141
            
Sbjct: 339 I 339

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 16/110 (14%), Positives = 38/110 (34%), Gaps = 5/110 (4%)

Query: 14  IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA- 72
           + +    A     +A E + N   + +  A        + EA     +    E +     
Sbjct: 312 LLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ 371

Query: 73  --YWRKATACM-KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119
             + R     + +++  + A     +G  +    SR    +K+  ++IA+
Sbjct: 372 LLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ-KSREKEKMKDKLQKIAK 420

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 2/89 (2%)

Query: 18  FELAYDLYSQAIEIS--PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75
              +   + +A+     P       ++   S K   F  A A   R++  +P    A+  
Sbjct: 93  PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKE 152

Query: 76  KATACMKLEEYETAKVALEKGASLAPGDS 104
            A   M   +   A    +K  S      
Sbjct: 153 LARTKMLAGQLGDADYYFKKYQSRVEVLQ 181

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 1/79 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           +  A      A++  P +   +  RA+    L+   +A     +A+ ++P  ++      
Sbjct: 24  YRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83

Query: 78  TA-CMKLEEYETAKVALEK 95
              C +L     +    +K
Sbjct: 84  WFLCGRLNRPAESMAYFDK 102

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 13/76 (17%), Positives = 33/76 (43%)

Query: 30  EISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA 89
           E +   + +    A   ++ Q++ +A A    A++ +P    A+  +A     L+  + A
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61

Query: 90  KVALEKGASLAPGDSR 105
           + +  +  S+ P  + 
Sbjct: 62  QESFRQALSIKPDSAE 77

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 12/85 (14%), Positives = 22/85 (25%), Gaps = 4/85 (4%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA-YWRK 76
           F LA     +++   P     F + A+  +      +A     +       +        
Sbjct: 129 FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLG 188

Query: 77  ATACMKLEEYETAKVALEKGASLAP 101
                 L   + A    E  A L  
Sbjct: 189 WKIAKALGNAQAAY---EYEAQLQA 210

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 47.1 bits (112), Expect = 5e-07
 Identities = 12/84 (14%), Positives = 22/84 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A   +    +  P   E +        + +    A+   N A  L+P     +   A
Sbjct: 33  LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 92

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            +         A  +L       P
Sbjct: 93  VSHTNEHNANAALASLRAWLLSQP 116

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 15/62 (24%), Positives = 23/62 (37%)

Query: 42  RAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101
              + +KL N  EA        + EP   +A+        + E+   A +AL     L P
Sbjct: 23  EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82

Query: 102 GD 103
            D
Sbjct: 83  KD 84

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 48.2 bits (114), Expect = 2e-06
 Identities = 16/123 (13%), Positives = 36/123 (29%), Gaps = 5/123 (4%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKL--QNFTEAVADANRAIELEPSMSKAYWR 75
            +LA     +  +   ++       A  S+    +   +A        +           
Sbjct: 146 LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNG 205

Query: 76  KATACMKLEEYETAKVALEKGASLAPGDSR-FTNLIKECEE--RIAEETGELQKQPLETG 132
           +A   M    +E A+  L++      G      NL+   +   +  E T     Q  +  
Sbjct: 206 QAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265

Query: 133 PTN 135
            ++
Sbjct: 266 RSH 268

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 45.7 bits (107), Expect = 4e-06
 Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 23/148 (15%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN------------SAELFADRAQASIK 48
            A      A+   +   ++ A     +A+EIS               A   A  A+A   
Sbjct: 10  GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG 69

Query: 49  LQNFTEAVADANRAI-------ELEPSMSKAY----WRKATACMKLEEYETAKVALEKGA 97
           L++F EA+  A++A+       EL     K +    + +A A   L     A    +K  
Sbjct: 70  LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129

Query: 98  SLAPGDSRFTNLIKECEERIAEETGELQ 125
            +       T   +   E   +   +L 
Sbjct: 130 EMIEERKGETPGKERMMEVAIDRIAQLG 157

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 43.2 bits (103), Expect = 7e-06
 Identities = 19/66 (28%), Positives = 37/66 (56%)

Query: 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
          ++ A + Y +A+E+ PN+AE + +   A  K  ++ EA+    +A+EL+P+ ++A     
Sbjct: 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84

Query: 78 TACMKL 83
           A  K 
Sbjct: 85 NAKQKQ 90

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 46.6 bits (110), Expect = 8e-06
 Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 10/96 (10%)

Query: 16  DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFT----------EAVADANRAIEL 65
                A +L  + ++ SP      A++A   I   +                D    +  
Sbjct: 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272

Query: 66  EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101
             ++S  Y  KA + +   + + +  A+  G  L  
Sbjct: 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM 308

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 3/92 (3%)

Query: 15  DDYFELAYDLYSQAIEIS--PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA 72
           +             + +    N + ++  +A +++      E+    N  I+LE S    
Sbjct: 254 EKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLN 312

Query: 73  YWRKATACMKLEEYETAKVALEKGASLAPGDS 104
           Y               A  A     +L PG +
Sbjct: 313 YVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 44.8 bits (105), Expect = 8e-06
 Identities = 19/134 (14%), Positives = 40/134 (29%), Gaps = 22/134 (16%)

Query: 17  YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNF----------TEAVADANRAIELE 66
            FE          + +P  A+         ++L  F           EA+     A+ ++
Sbjct: 17  LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID 76

Query: 67  PSMSKAYWRKATACMKL-----------EEYETAKVALEKGASLAPGDSRFTNLIKECEE 115
           P   +A W    A                 ++ A    ++     P ++ +   ++   +
Sbjct: 77  PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK 136

Query: 116 RIAEETGELQKQPL 129
              +   E  KQ L
Sbjct: 137 A-PQLHAEAYKQGL 149

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 43.1 bits (102), Expect = 9e-06
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 18 FELAYDLYSQAIEISP-NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76
           E A     + ++  P    E +     A  KL ++ +A+ +   AIEL P       RK
Sbjct: 16 IENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARK 75

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Length = 131

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 14/115 (12%), Positives = 36/115 (31%), Gaps = 12/115 (10%)

Query: 169 PARPKYRFQILMHEFYQKPEEVVVTV-FAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHF 227
           P+  KY +        Q+  E+ +         +  + +    + + V            
Sbjct: 2   PSEAKYTWD-------QELNEINIQFPVTGDADSSAIKIRMVGKKICVKNQ----GEIVI 50

Query: 228 QPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVS 282
              L  ++  +   + +    V++ + K     W SL     +V  Q++     +
Sbjct: 51  DGELLHEVDVSSLWWVINGDVVDVNVTKKRNEWWDSLLVGSESVDVQKLAENKHA 105

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 3/86 (3%)

Query: 21  AYDLYSQAIEI---SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           A   Y +AI       + AE +         L  + +A A     ++  P+        A
Sbjct: 9   AVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYA 68

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                L  YE     L K  +    D
Sbjct: 69  MVLYNLGRYEQGVELLLKIIAETSDD 94

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 6/72 (8%), Positives = 25/72 (34%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
                +  +  IE  P + +++  R      L++ ++ +      +  +     A+  + 
Sbjct: 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 207

Query: 78  TACMKLEEYETA 89
               + + ++  
Sbjct: 208 WVIQEFKLWDNE 219

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	379
2kmw_A	150	Uncharacterized protein AT3G03773; protein structu	99.89
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	99.88
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	99.85
2cg9_X	134	CO-chaperone protein SBA1; chaperone complex, HSP9	99.85
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	99.85
1wh0_A	134	Ubiquitin carboxyl-terminal hydrolase 19; USP, CS	99.84
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.84
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	99.81
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.78
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	99.78
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.77
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.77
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.76
2jtt_C	35	Calcyclin-binding protein; S100A6, SIAH-1 interact	99.75
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.74
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.74
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	99.74
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.72
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.72
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.7
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.67
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.65
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	99.65
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.65
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.65
1wfi_A	131	Nuclear distribution gene C homolog; NUDC, riken s	99.64
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.64
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.64
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.63
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.63
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.63
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.62
3qor_A	121	Nuclear migration protein NUDC; beta-sandwich, cha	99.61
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.61
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.6
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.59
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.59
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.59
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.58
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.57
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.57
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.57
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.56
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.55
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.55
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.55
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.54
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.54
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.53
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.52
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.51
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.51
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.5
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.5
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.5
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.47
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.45
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.44
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.44
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.44
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.43
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.43
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.43
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.42
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.41
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.41
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.38
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.38
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.38
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.38
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.37
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.37
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.37
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.37
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.37
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.36
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.36
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.36
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.36
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.36
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.35
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.35
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.35
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.34
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.34
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.33
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.33
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.33
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.32
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.32
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.32
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.31
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.31
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.31
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.3
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.3
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.3
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.3
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.29
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.29
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.28
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.28
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.28
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.28
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.26
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.26
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.26
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.25
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.23
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.23
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.22
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.22
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.2
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.2
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.2
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.18
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.18
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.17
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.16
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.16
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.15
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.15
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.14
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.13
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.13
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.07
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.07
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.06
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.06
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.06
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.06
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.05
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.04
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.04
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.03
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.03
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.02
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.01
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.01
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.01
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.0
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.0
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.0
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.0
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.98
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.98
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.97
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.97
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.96
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.96
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.96
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.96
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.96
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.94
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.93
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.93
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.93
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.92
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.92
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.91
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.91
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.91
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.9
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.9
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.9
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.89
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.89
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.87
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.87
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.87
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.86
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.86
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.86
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.86
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.86
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.85
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.84
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.84
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.84
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.82
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.82
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.81
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.81
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.81
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.8
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.79
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.77
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.77
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.74
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.74
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.72
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.68
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.65
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.64
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.63
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.62
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.62
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.59
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.55
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.51
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.46
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.44
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.36
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.36
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.31
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.31
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.29
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.21
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.2
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.2
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.18
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.15
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.13
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.11
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.09
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.09
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.05
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.04
2k8q_A	134	Protein SHQ1; beta-sandwich, CS domain, nucleus, s	98.01
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	97.99
4fei_A	102	Heat shock protein-related protein; stress respons	97.89
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.87
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.86
3eud_A	115	Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A	97.81
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	97.74
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.63
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	97.56
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.53
2wj5_A	101	Heat shock protein beta-6; chaperone, disulfide bo	97.53
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.51
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.48
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	97.48
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.35
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.29
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.27
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.25
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.24
3l1e_A	106	Alpha-crystallin A chain; lens transparency, polyd	97.21
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.2
3q9p_A	85	Heat shock protein beta-1; alpha-crystallin domain	97.19
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.18
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.1
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.07
2y1y_A	90	Alpha-crystallin B chain,; small heat shock protei	96.93
2klr_A	175	Alpha-crystallin B chain; protein, dimer, oligomer	96.64
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.36
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.33
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	96.33
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.74
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.62
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.62
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.19
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.07
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	94.47
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.47
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.28
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.01
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.42
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.24
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.03
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	92.57
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.53
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	91.46
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	91.44
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	91.25
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	90.71
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	90.62
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	89.28
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	87.79
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	87.72
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	87.6
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	86.23
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	85.99
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	81.41
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	80.83

>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.89  E-value=1.5e-24  Score=183.48  Aligned_cols=105  Identities=25%  Similarity=0.369  Sum_probs=91.2

Q ss_pred             ccccccccCCeEEEEEEeCCCCCCceEEEEe-ecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecC
Q 016973          179 LMHEFYQKPEEVVVTVFAKGIPAKNVTVDFG-EQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAE  257 (379)
Q Consensus       179 ~~~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~-~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~  257 (379)
                      +.|+||||.+.|+|+|+++++  ++++|+|+ +++|+|++...+|..|.+.++||++|+|+ |+|+|++++|+|+|+|++
T Consensus         5 P~~~W~Qt~~~V~ltI~l~~~--~~v~V~~~~~~~l~~~~~~~~~~~y~~~l~L~~~Idpe-S~~~v~~~kIei~L~K~e   81 (150)
T 2kmw_A            5 PEVLWAQRSDKVYLTVALPDA--KDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIMTE-YRKNVGLRNIIFSIQKEE   81 (150)
T ss_dssp             CCEEEEECSSEEEEEECCSSE--EEEEECCCTTEEEEEEEETTTTEEEEEEEEBSSCEEEE-EEEEEESSSEEEEEEECC
T ss_pred             CcEEEEeCCCEEEEEEEeCCC--CceEEEEecCCEEEEEEEcCCCceEEEEeEhhhccccc-ceEEecCCEEEEEEEECC
Confidence            459999999999999999987  58999999 79999998866677899999999999999 999999999999999999


Q ss_pred             CCCCCccccCCCccCCCccCCCCCCCCCC-CCCCCCCCCCCCchhHHHHHh
Q 016973          258 PIQWSSLEFSKGAVVPQRVNPPSVSGSPR-PTYPSSKPTRVDWDKLEAQVK  307 (379)
Q Consensus       258 ~~~W~~L~~~~~~~~~~~~~~~~~~~~~~-~~~p~s~~~~~dWdk~~~~~~  307 (379)
                      +..|++|++..                .+ +.|.     ++|||||.+|.+
T Consensus        82 ~~~W~rL~k~~----------------~K~~~~l-----k~Dwdkw~dede  111 (150)
T 2kmw_A           82 RSWWTRLLKSE----------------EKPAPYI-----KVDWNKWCDEDE  111 (150)
T ss_dssp             SSCCSCSBSCC----------------SSCCTTE-----EECSSSSCCSSC
T ss_pred             CCcCcccccCC----------------cccCccc-----cccchhcCCchh
Confidence            99999999752                22 3343     679999996543

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2

Probab=99.88  E-value=3.5e-23  Score=170.46  Aligned_cols=103  Identities=18%  Similarity=0.261  Sum_probs=89.4

Q ss_pred             cccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEc-CCCceeeeccccccccccCcceEEEeCcEEEEEEeecCC
Q 016973          180 MHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP  258 (379)
Q Consensus       180 ~~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~-~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~  258 (379)
                      .|+||||.+.|+|+|+++++  +++.|+|++++|+|++.. .+|..|.+.++||++|+|++|+|+|++++|+|+|+|++.
T Consensus         5 ~~~W~Qt~~~V~ltI~~~~~--~~~~V~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~~e~S~~~v~~~kiei~L~K~~~   82 (125)
T 1ejf_A            5 SAKWYDRRDYVFIEFCVEDS--KDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKGES   82 (125)
T ss_dssp             CEEEEECSSEEEEEECCTTE--EEEEEEEETTEEEEEEEETTTTEEEEEEEEBSSCEEEEEEEEEECSSCEEEEEEESST
T ss_pred             ceeEEeCCCEEEEEEEecCC--CceEEEEECCEEEEEEEeCCCCceEEEEEEccceeccccCEEEECCCEEEEEEEECCC
Confidence            48999999999999999985  799999999999999875 467789999999999999999999999999999999986


Q ss_pred             -CCCCccccCCCccCCCccCCCCCCCCCCCCCCCCCCCCCCchhHHHH
Q 016973          259 -IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQ  305 (379)
Q Consensus       259 -~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~~  305 (379)
                       ..|++|++..                .++.+.     ++|||||.++
T Consensus        83 ~~~W~rL~~~~----------------~K~~~l-----k~D~dkw~de  109 (125)
T 1ejf_A           83 GQSWPRLTKER----------------AKLNWL-----SVDFNNWKDW  109 (125)
T ss_dssp             TCCCSSSBSSC----------------CCCTTE-----EECTTTCCCC
T ss_pred             CCCCCceecCC----------------Cccccc-----cCChHHhCCc
Confidence             5999999753                223332     6799999864

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=3.9e-21  Score=158.69  Aligned_cols=95  Identities=21%  Similarity=0.261  Sum_probs=85.6

Q ss_pred             ccccccccccccccCCeEEEEEEeCCC---CCCceEEEEeecEEEEEEEcCCCceeeecc-ccccccccCcceEEEeCcE
Q 016973          173 KYRFQILMHEFYQKPEEVVVTVFAKGI---PAKNVTVDFGEQILSVSIDVPGEEAYHFQP-RLFGKIIPAKCRYEVLSTK  248 (379)
Q Consensus       173 ~~~~~~~~~~W~Qt~~~V~i~i~~k~~---~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~-~L~~~I~p~~s~~~v~~~k  248 (379)
                      .|...+.+|+||||.+.|+|+|+++++   .++++.|+|++++|+|.+...+|..|.|++ +||++|+|++|+|+|.+++
T Consensus        15 ~y~~~~~~y~W~Qt~~~V~i~I~l~~~~~~~~~~v~V~~~~~~l~v~~~~~~~~~y~~~~~~L~~~I~~e~S~~~v~~~k   94 (127)
T 1x5m_A           15 GYTVKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDT   94 (127)
T ss_dssp             CCCEECCSCEEEEETTEEEEEEECTTTTTSCTTSEEEEECSSEEEEEECSCSSSCEEEEEECBSSCCCTTTCEEEEETTE
T ss_pred             ccccCccEEEEEcCCCEEEEEEEeCCCCcCCccccEEEEEcCEEEEEEEcCCCCcEEEEhHHhcCccCcccCEEEEeCCE
Confidence            343445569999999999999999998   789999999999999999877778899999 5999999999999999999


Q ss_pred             EEEEEeecCCC-CCCccccC
Q 016973          249 VEIRLAKAEPI-QWSSLEFS  267 (379)
Q Consensus       249 iei~L~K~~~~-~W~~L~~~  267 (379)
                      |+|+|+|++.+ .|++|+..
T Consensus        95 Vei~L~K~~~~~~W~~L~~~  114 (127)
T 1x5m_A           95 VLILCRKKVENTRWDYLTQV  114 (127)
T ss_dssp             EEEEEECSSSSCCCSSSBHH
T ss_pred             EEEEEEECCCCCCCCccccc
Confidence            99999999875 99999965

>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}

Probab=99.85  E-value=7.8e-23  Score=170.09  Aligned_cols=104  Identities=19%  Similarity=0.285  Sum_probs=84.2

Q ss_pred             ccccccccCCe-------EEEEEEeCCCCCCceEEEEeecEEEEEEEcCC------CceeeeccccccccccCcceEEEe
Q 016973          179 LMHEFYQKPEE-------VVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG------EEAYHFQPRLFGKIIPAKCRYEVL  245 (379)
Q Consensus       179 ~~~~W~Qt~~~-------V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~------~~~~~~~~~L~~~I~p~~s~~~v~  245 (379)
                      +.|.||||.+.       |+|+|+++++  .++.|+|++++|+|++...+      +..|.+.++||++|+|++|+|+|+
T Consensus         7 p~~~W~Q~~~~~~~~k~~V~ltI~~~~~--~~~~V~~~~~~l~~~~~~~~~~g~~~~~~y~~~l~L~~~Idpe~S~~~v~   84 (134)
T 2cg9_X            7 PQVAWAQRSSTTDPERNYVLITVSIADC--DAPELTIKPSYIELKAQSKPHVGDENVHHYQLHIDLYKEIIPEKTMHKVA   84 (134)
T ss_dssp             ----CBCCCEEECCCSSEEEEECCCSSE--ESCCCCBCSSEEEECCEEC-------CEEBCEEEECSSCCCSSSEEEEEC
T ss_pred             CCEEEEeCCCCcCCcCCEEEEEEEecCC--CceEEEEECCEEEEEEecccccCCccCceEEEEEEChhhccccccEEEEC
Confidence            44889999987       9999999987  48999999999999876543      467999999999999999999999


Q ss_pred             CcE-EEEEEeecC--CCCCCccccCCCccCCCccCCCCCCCCCCCCCCCCCCCCCCchhHHHH
Q 016973          246 STK-VEIRLAKAE--PIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQ  305 (379)
Q Consensus       246 ~~k-iei~L~K~~--~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~~  305 (379)
                      +++ |+|+|+|++  ...|++|++..                .++.|.     ++|||||.+|
T Consensus        85 ~~~~vei~L~K~~~~~~~W~rL~k~~----------------~K~~~l-----k~D~dkw~dE  126 (134)
T 2cg9_X           85 NGQHYFLKLYKKDLESEYWPRLTKEK----------------VKYPYI-----KTDFDKWVDA  126 (134)
T ss_dssp             CC--CEEEEEECSSSSCCCSCSSSSC----------------CCCSSE-----EECTTTCCCS
T ss_pred             CCEEEEEEEEECCCCCCCCCceecCC----------------CccCcc-----cCCchhcCCc
Confidence            999 999999998  47999999752                223332     6799999964

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*

Probab=99.85  E-value=2.5e-21  Score=150.84  Aligned_cols=87  Identities=77%  Similarity=1.243  Sum_probs=82.6

Q ss_pred             ccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecCCCC
Q 016973          181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQ  260 (379)
Q Consensus       181 ~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~  260 (379)
                      |+||||.+.|+|+|+++|+.++++.|+|++++|+|++...++..|.++++||++|+|++|+|++.+++|+|+|+|++++.
T Consensus         5 ~~W~Qt~~~V~v~i~~~~v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~   84 (92)
T 2xcm_C            5 HEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPDKCKYEVLSTKIEICLAKADIIT   84 (92)
T ss_dssp             EEEEEETTEEEEEEECCSCCGGGEEEEECSSBEEEEECCTTSCCEEECCBBSSCBCGGGCEEEECSSCEEEEEEBSSSCC
T ss_pred             ccEEeCCCEEEEEEEECCCChHHeEEEEECCEEEEEEEcCCCcEEEEeeEcCCccCchhEEEEEECCEEEEEEEcCCCCc
Confidence            99999999999999999999999999999999999988666778999999999999999999999999999999999889


Q ss_pred             CCccccC
Q 016973          261 WSSLEFS  267 (379)
Q Consensus       261 W~~L~~~  267 (379)
                      |++|++.
T Consensus        85 W~~L~~~   91 (92)
T 2xcm_C           85 WASLEHG   91 (92)
T ss_dssp             CSCSBTT
T ss_pred             chhcccC
Confidence            9999863

>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=99.84  E-value=2.4e-21  Score=160.49  Aligned_cols=88  Identities=27%  Similarity=0.508  Sum_probs=82.7

Q ss_pred             cccccc-CCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCCc------------eeeeccccccccccCcceEEEeCc
Q 016973          181 HEFYQK-PEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEE------------AYHFQPRLFGKIIPAKCRYEVLST  247 (379)
Q Consensus       181 ~~W~Qt-~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~------------~~~~~~~L~~~I~p~~s~~~v~~~  247 (379)
                      |+|||| .+.|+|+|+++++.++++.|+|++++|+|.+...++.            .|.|+++||++|+|++|+|+|.++
T Consensus        22 ~~W~Qt~~~~V~vtI~~k~v~~~~v~V~f~~~~l~v~~~~~~~~~l~~~~a~g~~~~y~~~~~L~~~I~pe~S~~~v~~~  101 (134)
T 1wh0_A           22 NDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFCFTAS  101 (134)
T ss_dssp             EEEEEETTTEEEEEEECCSBCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEEEEEEECSS
T ss_pred             eEEEcCCCCEEEEEEEeCCCCcccCEEEEECCEEEEEEEcCCCcccccccccCcceeEEEeccccccCCchhCEEEEeCC
Confidence            999999 9999999999999999999999999999999876654            799999999999999999999999


Q ss_pred             EEEEEEeecCCCCCCccccCC
Q 016973          248 KVEIRLAKAEPIQWSSLEFSK  268 (379)
Q Consensus       248 kiei~L~K~~~~~W~~L~~~~  268 (379)
                      +|+|+|+|++..+|++|++..
T Consensus       102 kIeI~L~K~e~~~W~~L~~~~  122 (134)
T 1wh0_A          102 RIDICLRKRQSQRWGGLEAPA  122 (134)
T ss_dssp             EEEEEEEESSSCCCSCSBCCC
T ss_pred             EEEEEEEECCCCccccccccC
Confidence            999999999989999999764

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.84  E-value=7.5e-20  Score=150.46  Aligned_cols=112  Identities=27%  Similarity=0.476  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      |+.+.++|+.+++.|+|++|+.+|+++|.++|.++.+++++|.||.++|++++|+.+|.+|+.++|.+..+|+++|.+|+
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (379)
                      .+|+|++|+.+|+++++++|++..+...++.|
T Consensus        93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            99999999999999999999999998888776

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=99.81  E-value=3.3e-20  Score=150.38  Aligned_cols=93  Identities=35%  Similarity=0.660  Sum_probs=86.1

Q ss_pred             cccccccccccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEE
Q 016973          172 PKYRFQILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEI  251 (379)
Q Consensus       172 ~~~~~~~~~~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei  251 (379)
                      +.+|     |+|+||.+.|+|+|+++|+.++++.|+|++++|+|++...++..|.+.++||++|+|++|+|++.+++|+|
T Consensus         8 ~~~~-----~~W~Qt~~~V~v~i~l~~v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~~e~s~~~~~~~~l~i   82 (114)
T 1rl1_A            8 SKIK-----YDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLSTKIEI   82 (114)
T ss_dssp             CCCC-----EEEEECSSEEEEEECCCSCCGGGEEEECSSSCEEEEEECTTSSEEEEEECBSSCCCGGGEEEEECSSSEEE
T ss_pred             CCCC-----ccEEeCCCEEEEEEEeCCCCHHHCEEEEEcCEEEEEEEeCCCcEEEEEeeCCCcCCccccEEEEECCEEEE
Confidence            4567     99999999999999999999999999999999999988767778999999999999999999999999999


Q ss_pred             EEeecCCCCCCccccCCC
Q 016973          252 RLAKAEPIQWSSLEFSKG  269 (379)
Q Consensus       252 ~L~K~~~~~W~~L~~~~~  269 (379)
                      +|.|++...|++|++.+.
T Consensus        83 ~L~K~~~~~W~~L~~~~~  100 (114)
T 1rl1_A           83 KLKKPEAVRWEKLEGQGD  100 (114)
T ss_dssp             EEECSSCCCCSSSBTTC-
T ss_pred             EEEcCCCCcCccccccCC
Confidence            999999889999997653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.78  E-value=3.5e-19  Score=151.85  Aligned_cols=120  Identities=20%  Similarity=0.147  Sum_probs=111.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHccCHHHHHHHHHHHHHh---
Q 016973            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN-------SAE-----LFADRAQASIKLQNFTEAVADANRAIEL---   65 (379)
Q Consensus         1 ~A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~-------~~~-----~~~~ra~~~~~lg~~~eAl~~~~~Al~l---   65 (379)
                      +|..++..|+.++..|+|++|+..|++||+++|+       +..     +|.++|.|+.++|+|++|+.+|++||.+   
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            4678999999999999999999999999999999       544     9999999999999999999999999999   


Q ss_pred             ----CCCCHHHH----HHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           66 ----EPSMSKAY----WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        66 ----~p~~~~a~----~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                          +|++..+|    |++|.+|..+|+|++|+.+|+++++++|++......+..+...+...
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~  152 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDR  152 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHH
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence                99999999    99999999999999999999999999999988777777776666554

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}

Probab=99.78  E-value=3.6e-19  Score=147.61  Aligned_cols=85  Identities=12%  Similarity=0.154  Sum_probs=74.0

Q ss_pred             ccccccccCCeEEEEEEe-CCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecC
Q 016973          179 LMHEFYQKPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAE  257 (379)
Q Consensus       179 ~~~~W~Qt~~~V~i~i~~-k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~  257 (379)
                      +.|.|+||.+.|+|+|++ +|++.+++.|+|++++|+|.+.   |.+ .+.++||++|+|++|+|+|.+++|+|+|.|..
T Consensus         5 ~~y~W~Qt~~~V~i~I~lp~~~~~kdv~V~i~~~~l~v~~~---g~~-~~~~~L~~~I~~e~S~w~i~~~kv~i~L~K~~   80 (131)
T 2o30_A            5 AKYTWDQELNEINIQFPVTGDADSSAIKIRMVGKKICVKNQ---GEI-VIDGELLHEVDVSSLWWVINGDVVDVNVTKKR   80 (131)
T ss_dssp             CCCEEEEETTEEEEEEECC---CCSCEEEEEETTEEEEEET---TEE-EEEEEBSSCEEEEEEEEEEETTEEEEEEEESS
T ss_pred             CcEEEEecCCEEEEEEECCCCCCccceEEEEECCEEEEEEC---CEe-eEccccccccccccCEEEEeCCEEEEEEEECC
Confidence            348899999999999998 6889999999999999999874   445 68889999999999999999999999999996


Q ss_pred             CCCCCccccC
Q 016973          258 PIQWSSLEFS  267 (379)
Q Consensus       258 ~~~W~~L~~~  267 (379)
                      ...|++|...
T Consensus        81 ~~~W~~L~~~   90 (131)
T 2o30_A           81 NEWWDSLLVG   90 (131)
T ss_dssp             CCCCSCSBC-
T ss_pred             CCCCccccCC
Confidence            6789999965

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.77  E-value=9.7e-18  Score=136.26  Aligned_cols=116  Identities=31%  Similarity=0.460  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      ++.++..|..++..|+|++|+..|++++..+|.++.+++++|.||+++|++++|+.+|.+++.++|.+..+++++|.+++
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcC------CCChHHHHHHHHHHHHH
Q 016973           82 KLEEYETAKVALEKGASLA------PGDSRFTNLIKECEERI  117 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~------p~~~~~~~~l~~~~~~l  117 (379)
                      .+|++++|+.+|+++++++      |++..+...+..+...+
T Consensus        84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            9999999999999999999      99999999998887654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.77  E-value=6.4e-18  Score=143.79  Aligned_cols=120  Identities=23%  Similarity=0.312  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI------------------SPNSAELFADRAQASIKLQNFTEAVADANRAI   63 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~------------------~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al   63 (379)
                      +..+...|+.++..|+|++|+..|+++|.+                  +|.+..+|+++|.||+++|+|++|+.+|.+++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            567899999999999999999999999999                  77778999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHhhh
Q 016973           64 ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS-RFTNLIKECEERIAEET  121 (379)
Q Consensus        64 ~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~-~~~~~l~~~~~~l~~~~  121 (379)
                      .++|.++.+|+++|.+|+.+|+|++|+.+|++++.++|++. .+...+..+...+....
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~  149 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKK  149 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999 78889999998888763

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.76  E-value=3e-17  Score=139.88  Aligned_cols=121  Identities=26%  Similarity=0.378  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +..++..|..++..|+|++|+.+|++++.++|.++.+++++|.||+.+|+|++|+.+|.+++.++|.+..+|+++|.+|+
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   90 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHhhhc
Q 016973           82 KLEEYETAKVALEKGASLAPGDSR--FTNLIKECEERIAEETG  122 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~--~~~~l~~~~~~l~~~~~  122 (379)
                      .+|+|++|+.+|+++++++|++..  +...+..+..++.+...
T Consensus        91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~  133 (164)
T 3sz7_A           91 DMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANR  133 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999988  67777788888877643

>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}

Probab=99.75  E-value=1.9e-19  Score=110.66  Aligned_cols=32  Identities=34%  Similarity=0.688  Sum_probs=29.4

Q ss_pred             chHHHHHHHHHHhcCCCHHHHHHhhhhhhccC
Q 016973          317 GDAALNKFFQEIYADADEDTRRAMKKSFVESN  348 (379)
Q Consensus       317 ~~~~l~~~f~~iY~~~d~d~kram~Ks~~eS~  348 (379)
                      ++++||+|||+||++|||||||||||||+|||
T Consensus         4 p~~~l~~~fk~iY~~gddd~kram~KS~~eS~   35 (35)
T 2jtt_C            4 SSEGLMNVLKKIYEDGDDDMKRTINKAWVESR   35 (35)
T ss_dssp             -CCSHHHHHHHHHTTCCSSHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Confidence            34579999999999999999999999999997

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.74  E-value=5.1e-17  Score=138.12  Aligned_cols=103  Identities=13%  Similarity=0.037  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +..++..|..++..|+|++|+.+|++++.++|.++.+|+++|.||..+|+|++|+.+|.+|+.++|+++.+|+++|.+|.
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~  115 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCCh
Q 016973           82 KLEEYETAKVALEKGASLAPGDS  104 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~  104 (379)
                      .+|++++|+.+|++++++.|+.+
T Consensus       116 ~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          116 RLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999865

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.74  E-value=4.9e-17  Score=133.53  Aligned_cols=111  Identities=23%  Similarity=0.288  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-------SKAYW   74 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~-------~~a~~   74 (379)
                      |..+.+.|+.++..|+|++|+.+|++||+++|.++.+|.++|.||+.+|+|++|+.+|.+++.++|.+       +.+|+
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            55778999999999999999999999999999999999999999999999999999999999998754       46899


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973           75 RKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (379)
Q Consensus        75 ~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (379)
                      ++|.++..+|+|++|+.+|++++.+.|+ +.....+..+
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l  125 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL  125 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence            9999999999999999999999999885 4444444443

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4

Probab=99.74  E-value=1.3e-17  Score=137.00  Aligned_cols=90  Identities=18%  Similarity=0.199  Sum_probs=81.0

Q ss_pred             cccccccCCeEEEEEEeC-CC-CCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcE-EEEEEeec
Q 016973          180 MHEFYQKPEEVVVTVFAK-GI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTK-VEIRLAKA  256 (379)
Q Consensus       180 ~~~W~Qt~~~V~i~i~~k-~~-~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~k-iei~L~K~  256 (379)
                      .|.|+||.+.|+|+|.++ ++ +.+++.|+|++++|+|.+...+|..+.+.++||++|+|++|+|+|.+++ |+|+|+|+
T Consensus        21 ~y~W~Qt~~~V~i~I~lp~~~~~~kdv~V~i~~~~l~v~~~~~~~~~~~~~~~L~~~I~~e~S~w~i~~~k~v~i~L~K~  100 (124)
T 1wgv_A           21 NYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKCVLVNLSKV  100 (124)
T ss_dssp             SCEEEEETTEEEEEEECCTTCCSGGGEEEEECSSEEEEEEECSSSEEEEEEEEBSSCBCTTTCEEEECTTSEEEEEECBS
T ss_pred             cEEEEEcccEEEEEEEcCCCCCchhheEEEEEcCEEEEEEEccCCCceEEcccccCcCCCcCCEEEEeCCCEEEEEEEEC
Confidence            488999999999999986 66 7899999999999999987655666778999999999999999999887 99999999


Q ss_pred             CCCCCCccccCCC
Q 016973          257 EPIQWSSLEFSKG  269 (379)
Q Consensus       257 ~~~~W~~L~~~~~  269 (379)
                      +...|++|...+.
T Consensus       101 ~~~~W~~L~~~~~  113 (124)
T 1wgv_A          101 GEYWWNAILEGEE  113 (124)
T ss_dssp             SSCCCSCSBTTSC
T ss_pred             CCCCCcCcccCCC
Confidence            8889999997643

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.72  E-value=1.5e-16  Score=134.29  Aligned_cols=118  Identities=11%  Similarity=0.135  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..++..|..++..|+|++|+..|.+++..+|.++.+++++|.||..+|++++|+.+|.+++.++|+++.+++.+|.+|..
T Consensus        22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~  101 (148)
T 2vgx_A           22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ  101 (148)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +|++++|+.+|+++++++|+++....+..++...+...
T Consensus       102 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l  139 (148)
T 2vgx_A          102 XGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAI  139 (148)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHH
Confidence            99999999999999999999998888888888887775

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.72  E-value=1.6e-16  Score=132.36  Aligned_cols=118  Identities=10%  Similarity=0.134  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..++..|..++..|+|++|+.+|.+++..+|.++.+++.+|.||..+|+|++|+.+|.+++.++|.++.+++.+|.+|..
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +|++++|+.+|++++.++|+++.......++...+...
T Consensus        99 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l  136 (142)
T 2xcb_A           99 LGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV  136 (142)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence            99999999999999999999998888888888777765

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.70  E-value=1.3e-16  Score=134.75  Aligned_cols=112  Identities=18%  Similarity=0.120  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      .++..|.+++..|+|++|+.+|+++|+++|+++.+|+++|.||..+|++++|+.+|.+++.++|+++.+++.+|.+|+.+
T Consensus        33 ~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  112 (150)
T 4ga2_A           33 KGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKN  112 (150)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHH-HHHHHhcCCCChHHHHHHHHHHH
Q 016973           84 EEYETAKVA-LEKGASLAPGDSRFTNLIKECEE  115 (379)
Q Consensus        84 g~y~~A~~~-~~~a~~l~p~~~~~~~~l~~~~~  115 (379)
                      |++++|... ++++++++|+++.+...+.++..
T Consensus       113 ~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~  145 (150)
T 4ga2_A          113 DVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD  145 (150)
T ss_dssp             CSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            999887765 59999999999998777766644

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.67  E-value=1.6e-15  Score=124.09  Aligned_cols=119  Identities=24%  Similarity=0.367  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +..++..|..++..|+|++|+.+|.+++..+|.++.+++++|.|++.+|++++|+.++.+++.++|.++.+++.+|.+|+
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   88 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCC-----ChHHHHHHHHHHHHHHhh
Q 016973           82 KLEEYETAKVALEKGASLAPG-----DSRFTNLIKECEERIAEE  120 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~-----~~~~~~~l~~~~~~l~~~  120 (379)
                      .+|++++|+.+|++++.++|+     +..+...+..+.......
T Consensus        89 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~  132 (137)
T 3q49_B           89 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS  132 (137)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998     777888888887776554

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.65  E-value=3.9e-15  Score=130.62  Aligned_cols=121  Identities=22%  Similarity=0.301  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA----------------ELFADRAQASIKLQNFTEAVADANRAIEL   65 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~----------------~~~~~ra~~~~~lg~~~eAl~~~~~Al~l   65 (379)
                      +..++..|..++..|+|++|+.+|.+++.+.|.++                .+++++|.||+.+|+|++|+.+|.+++.+
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            45788999999999999999999999999999887                89999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhc
Q 016973           66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETG  122 (379)
Q Consensus        66 ~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~  122 (379)
                      +|.+..+++++|.+|+.+|+|++|+.+|+++++++|++..+...+..+...++....
T Consensus       118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  174 (198)
T 2fbn_A          118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK  174 (198)
T ss_dssp             STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998888743

>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}

Probab=99.65  E-value=2.6e-16  Score=134.05  Aligned_cols=84  Identities=24%  Similarity=0.390  Sum_probs=75.2

Q ss_pred             cccccccCCeEEEEEEeC-CCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcE-EEEEEeecC
Q 016973          180 MHEFYQKPEEVVVTVFAK-GIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTK-VEIRLAKAE  257 (379)
Q Consensus       180 ~~~W~Qt~~~V~i~i~~k-~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~k-iei~L~K~~  257 (379)
                      .|.|+||.+.|+|+|.++ +++.++|.|+|++++|+|.++   |.. .+.++||++|+|++|+|+|.+++ |+|+|.|++
T Consensus        15 ~y~W~Qt~~eV~v~I~lp~~~~~kdv~V~i~~~~L~v~~k---g~~-~l~g~L~~~I~~eeS~w~i~~~k~v~I~L~K~~   90 (157)
T 2rh0_A           15 WGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVG---GRE-ILKGKLFDSTIADEGTWTLEDRKMVRIVLTKTK   90 (157)
T ss_dssp             SEEEEECSSEEEEEEECCTTCCGGGEEEEECSSEEEEEET---TEE-EEEEEBSSCBCGGGCEEEEECCCEEEEEEEBSS
T ss_pred             cEEEEecCCEEEEEEECCCCCcccceEEEEecCEEEEEEC---CEE-EEeeccccccCccccEEEEcCCcEEEEEEEEcC
Confidence            388999999999999985 788899999999999999885   444 47889999999999999999987 999999998


Q ss_pred             C---CCCCccccC
Q 016973          258 P---IQWSSLEFS  267 (379)
Q Consensus       258 ~---~~W~~L~~~  267 (379)
                      .   ..|++|...
T Consensus        91 ~~~~~~W~~L~k~  103 (157)
T 2rh0_A           91 RDAANCWTSLLES  103 (157)
T ss_dssp             CSTTCCCSEEETT
T ss_pred             CCcCCcChhhhcC
Confidence            5   799999964

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.65  E-value=1.9e-15  Score=122.99  Aligned_cols=102  Identities=12%  Similarity=0.008  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      .++..|..++..|++++|+..|.+++..+|+++.+++.+|.++..+|++++|+..|.+|+.++|++..+++.+|.+|..+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChH
Q 016973           84 EEYETAKVALEKGASLAPGDSR  105 (379)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~  105 (379)
                      |++++|+..|+++++++|++..
T Consensus        99 g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHC-------
T ss_pred             CCHHHHHHHHHHHHHhCcCCCC
Confidence            9999999999999999998753

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.65  E-value=8.5e-15  Score=115.30  Aligned_cols=114  Identities=26%  Similarity=0.440  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +..++..|..++..|+|++|+.+|.+++..+|.++.+++.+|.++..+|++++|+..+.+++.++|.++.+++.+|.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEE  115 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  115 (379)
                      .+|++++|+..|+++++++|++..+...+..+..
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            9999999999999999999999988887777653

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4

Probab=99.64  E-value=1.1e-15  Score=126.61  Aligned_cols=86  Identities=19%  Similarity=0.256  Sum_probs=77.1

Q ss_pred             cccccccCCeEEEEEEeC-C--CCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCc-EEEEEEee
Q 016973          180 MHEFYQKPEEVVVTVFAK-G--IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAK  255 (379)
Q Consensus       180 ~~~W~Qt~~~V~i~i~~k-~--~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~-kiei~L~K  255 (379)
                      .|.|+||.+.|+|+|.++ +  ++.+++.|+|++++|+|.+.   |..+.+.++||++|+|+.|+|+|.++ .|+|+|+|
T Consensus         9 ~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~~~~l~v~~k---g~~~~~~~~L~~~I~~e~s~w~i~~~k~v~i~L~K   85 (131)
T 1wfi_A            9 NYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLK---GQPPVVDGELYNEVKVEESSWLIEDGKVVTVHLEK   85 (131)
T ss_dssp             SSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEET---TSCCSBCSCBSSCBCSTTCEEEEETTTEEEEEEEB
T ss_pred             cEEEEecCCEEEEEEECCCCCcccccceEEEEeCCEEEEEEC---CceEEEecccccccccccCEEEEcCCCEEEEEEEE
Confidence            388999999999999987 5  78899999999999999975   44577889999999999999999997 59999999


Q ss_pred             cCC-CCCCccccCC
Q 016973          256 AEP-IQWSSLEFSK  268 (379)
Q Consensus       256 ~~~-~~W~~L~~~~  268 (379)
                      ++. ..|++|...+
T Consensus        86 ~~~~~~W~~L~~~~   99 (131)
T 1wfi_A           86 INKMEWWNRLVTSD   99 (131)
T ss_dssp             SSSCCCCSCSBSSC
T ss_pred             CCCCCCChhhhcCC
Confidence            987 5999999754

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.64  E-value=3.7e-15  Score=132.45  Aligned_cols=117  Identities=15%  Similarity=0.053  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHHh
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFAD----------------RAQASIKLQNFTEAVADANRAIEL   65 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~----------------ra~~~~~lg~~~eAl~~~~~Al~l   65 (379)
                      ++.++.+|..++..|+|++|+.+|++++..+|+++.+++.                +|.+|..+|++++|+..|.+++.+
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999999                999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 016973           66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA  118 (379)
Q Consensus        66 ~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~  118 (379)
                      +|++..+++.+|.+|+.+|++++|+.+|+++++++|++..+...++.+....+
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~  136 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA  136 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999888887765443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.64  E-value=6.2e-15  Score=141.17  Aligned_cols=119  Identities=21%  Similarity=0.360  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRAIELE   66 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---------------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~   66 (379)
                      +..++.+|+.++..|+|++|+.+|+++|.++|.+               ..+++++|.||+++|+|++|+.+|.+|+.++
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  226 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD  226 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            4578899999999999999999999999999999               6999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           67 PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        67 p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      |.+..+++++|.+|+.+|+|++|+.+|+++++++|++..+...++.+...+++.
T Consensus       227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~  280 (336)
T 1p5q_A          227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ  280 (336)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999888888887776664

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.63  E-value=4.6e-15  Score=119.81  Aligned_cols=116  Identities=28%  Similarity=0.423  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      ...++..|..++..|+|++|+.+|++++..+|.+..+++.+|.++..+|++++|+..+.+++.++|.+..+++.+|.+++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~   95 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE   95 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l  117 (379)
                      .+|++++|+.+|++++.++|++..+...+..+...+
T Consensus        96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence            999999999999999999999998888888877654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.63  E-value=6.7e-15  Score=119.06  Aligned_cols=116  Identities=16%  Similarity=0.142  Sum_probs=106.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHH
Q 016973            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYW   74 (379)
Q Consensus         1 ~A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~---~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~---~~a~~   74 (379)
                      +++.++..|..++..|+|++|+..|.+++..+|++.   .+++.+|.|++.+|++++|+..|.+++.++|++   +.+++
T Consensus         1 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~   80 (129)
T 2xev_A            1 MARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLL   80 (129)
T ss_dssp             --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred             CcHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence            456789999999999999999999999999999988   799999999999999999999999999999999   89999


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973           75 RKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (379)
Q Consensus        75 ~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (379)
                      .+|.+++.+|++++|+..|++++...|++......+..+...
T Consensus        81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l  122 (129)
T 2xev_A           81 KLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI  122 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            999999999999999999999999999998776666655543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.63  E-value=4.4e-15  Score=148.21  Aligned_cols=119  Identities=23%  Similarity=0.331  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRAIELE   66 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---------------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~   66 (379)
                      +..++.+|+.++..|+|++|+.+|++||.++|.+               ..+|+++|.||+++|+|++|+.+|.+|+.++
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            4578899999999999999999999999999998               7999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           67 PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        67 p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      |.+..+|+++|.+|+.+|+|++|+.+|+++++++|++..+...+..+...+++.
T Consensus       348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~  401 (457)
T 1kt0_A          348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEH  401 (457)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988888877764

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.62  E-value=2.3e-14  Score=114.77  Aligned_cols=118  Identities=34%  Similarity=0.476  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +..++..|..++..|+|++|+..|.+++..+|.+..+++.+|.++..+|++++|+..+.+++.++|.+..+++.+|.+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS   91 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      .+|++++|+.+|++++.++|++......+..+...+++
T Consensus        92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            99999999999999999999999988888888777654

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A

Probab=99.61  E-value=1.9e-15  Score=123.32  Aligned_cols=86  Identities=19%  Similarity=0.246  Sum_probs=76.8

Q ss_pred             ccccccCCeEEEEEEeC-C--CCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCc-EEEEEEeec
Q 016973          181 HEFYQKPEEVVVTVFAK-G--IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKA  256 (379)
Q Consensus       181 ~~W~Qt~~~V~i~i~~k-~--~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~-kiei~L~K~  256 (379)
                      |.|+||.+.|+|+|.++ +  +..++|.|+|++++|+|.++   |..+.+.++||++|+|++|+|+|.+. +|+|+|.|.
T Consensus        19 y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~~~~l~v~~k---g~~~~~~g~L~~~I~~deS~w~i~~~~~i~i~L~K~   95 (121)
T 3qor_A           19 YRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLK---GQPAIIDGELYNEVKVEESSWLIADGAVVTVHLEKI   95 (121)
T ss_dssp             CEEEECSSEEEEEEECCCSSCCCGGGEEEEEETTEEEEEET---TSCCSEEEEBSSCBCGGGCEEEEETTTEEEEEEEBS
T ss_pred             EEEEEccceEEEEEECCCCCcccccceEEEEEcCEEEEEEc---CcceEEeccccccccccccEEEEcCCCEEEEEEEEC
Confidence            88999999999999886 4  78899999999999999875   44678899999999999999999985 899999999


Q ss_pred             CC-CCCCccccCCC
Q 016973          257 EP-IQWSSLEFSKG  269 (379)
Q Consensus       257 ~~-~~W~~L~~~~~  269 (379)
                      +. ..|++|...+.
T Consensus        96 ~~~~~W~~L~~~~~  109 (121)
T 3qor_A           96 NKMEWWSRLVSSDP  109 (121)
T ss_dssp             SSSCCCSCSBTTSC
T ss_pred             CCCCCChhhhcCCC
Confidence            87 69999987643

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=1.5e-14  Score=119.08  Aligned_cols=113  Identities=27%  Similarity=0.424  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~   78 (379)
                      +..++..|..++..|+|++|+.+|++++..+|++   ..+++++|.+|+.+|++++|+..+.+++.++|.+..+++.+|.
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~  107 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ  107 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence            4678999999999999999999999999999998   8999999999999999999999999999999999999999999


Q ss_pred             HHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 016973           79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (379)
Q Consensus        79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (379)
                      +|+.+|++++|+.+|++++.++|++..+...+..+.
T Consensus       108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            999999999999999999999999998887777764

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.60  E-value=5.5e-14  Score=118.05  Aligned_cols=113  Identities=32%  Similarity=0.511  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +..++..|..++..|+|++|+..|.+++..+|.+..+++++|.++..+|++++|+..+.+++.++|.++.+++.+|.+++
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (379)
                      .+|++++|+.+|++++.++|++......+..+.
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~  125 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  125 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999999999998776666653

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.59  E-value=1.1e-14  Score=153.01  Aligned_cols=118  Identities=18%  Similarity=0.231  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      ++.+.+.|+++...|+|++|+.+|++||+++|+++.+++++|.+|.++|++++|+..|++|++++|+++.+|+++|.+|.
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~   88 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK   88 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34566666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      .+|++++|+.+|+++++++|++..+...++.+...+++
T Consensus        89 ~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~  126 (723)
T 4gyw_A           89 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN  126 (723)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            66666666666666666666666666555555544433

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.59  E-value=3.7e-14  Score=113.73  Aligned_cols=118  Identities=19%  Similarity=0.281  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-------SKAYW   74 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~-------~~a~~   74 (379)
                      +..++..|..++..|+|++|+.+|.+++..+|.+..+++++|.++..+|++++|+..+.+++.+.|.+       ..+++
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999998877       99999


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           75 RKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        75 ~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      ++|.+++.+|++++|+.+|++++.+.| +......+..+...++..
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  128 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ  128 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999 688888888888877664

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.59  E-value=1.4e-14  Score=140.88  Aligned_cols=119  Identities=24%  Similarity=0.442  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIE----------------ISPNSAELFADRAQASIKLQNFTEAVADANRAIEL   65 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~----------------~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l   65 (379)
                      +..++..|+.++..|+|++|+.+|+++|.                .+|.+..+|+++|.||+++|+|++|+.+|.+|+.+
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            45788999999999999999999999999                77888899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        66 ~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +|.++.+++++|.+|+.+|+|++|+.+|+++++++|++..+...+..+...++..
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~  357 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ  357 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998888776

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.58  E-value=2.2e-14  Score=128.24  Aligned_cols=117  Identities=15%  Similarity=0.175  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..++..|..++..|++++|+..|++++..+|.++.+++++|.++..+|++++|+..|.+++.++|+++.+++.+|.++..
T Consensus         6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~   85 (217)
T 2pl2_A            6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA   85 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            45667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             c-----------cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           83 L-----------EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        83 l-----------g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      +           |++++|+..|+++++++|++..+...++.+...+++
T Consensus        86 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~  133 (217)
T 2pl2_A           86 LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE  133 (217)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             hhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence            7           777777777777777777777766666665554443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.57  E-value=1.7e-13  Score=108.68  Aligned_cols=115  Identities=22%  Similarity=0.387  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +..++..|..++..|++++|+.+|.+++..+|.+..+++.+|.++...|++++|+..+.+++.++|.+..+++.+|.+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (379)
                      .+|++++|+..|++++.++|++..+...+..+...
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            99999999999999999999999988888777654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.57  E-value=9.8e-14  Score=123.87  Aligned_cols=112  Identities=16%  Similarity=0.300  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISP-NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p-~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~   80 (379)
                      +..++..|..++..|+|++|+..|++++..+| .+..+++++|.|+..+|++++|+.+|.+++.++|.+..+++.+|.+|
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   86 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY   86 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence            45789999999999999999999999999999 88999999999999999999999999999999999999999999999


Q ss_pred             HhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (379)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (379)
                      ..+|++++|+..|+++++++|++..+...+..+
T Consensus        87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  119 (228)
T 4i17_A           87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIY  119 (228)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence            999999999999999999999999554333333

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.57  E-value=2.6e-15  Score=126.70  Aligned_cols=114  Identities=11%  Similarity=-0.095  Sum_probs=104.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCH
Q 016973            7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY   86 (379)
Q Consensus         7 ~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y   86 (379)
                      ..|..+...|++++|+..|.+++..+|.++..++.+|.+|+++|+|++|+.+|.+++.++|+++.+|+.+|.+|..+|++
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            35788888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           87 ETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        87 ~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      ++|+.+|+++++++|++..+...++.+...++..
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  115 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVT  115 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Confidence            9999999999999999999998888887766553

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.56  E-value=3.3e-14  Score=138.76  Aligned_cols=119  Identities=13%  Similarity=0.017  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSKAYWRKATAC   80 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~-~~eAl~~~~~Al~l~p~~~~a~~~la~~~   80 (379)
                      +..+...|.++...|++++|+.+|+++|.++|++..+|++||.++..+|+ +++|+.+|.+|+.++|.+..+|+++|.+|
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~  176 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  176 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999997 99999999999999999999999999999


Q ss_pred             HhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      ..+|+|++|+.+|+++++++|++..++..++.+...++..
T Consensus       177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~  216 (382)
T 2h6f_A          177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW  216 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred             HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCCh
Confidence            9999999999999999999999999999999888877764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.55  E-value=1.2e-13  Score=118.84  Aligned_cols=115  Identities=15%  Similarity=0.184  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +..+++.|.+++..|+|++|+..|+++|+++|+++.+++.+|.+|..+|++++|+..+.+++...|....+++.+|.++.
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF   84 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999988888888887777765555555555555


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (379)
                      ..++++.|...+.+++.++|++..+...++.+...
T Consensus        85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~  119 (184)
T 3vtx_A           85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS  119 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            55555555555555555555555544444444433

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.55  E-value=5.4e-14  Score=147.87  Aligned_cols=118  Identities=19%  Similarity=0.207  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +..+.+.|.+++..|++++|+..|++||+++|+++.+|+++|.+|..+|++++|+.+|++|++++|+++.+|+++|.+|.
T Consensus        43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~  122 (723)
T 4gyw_A           43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHK  122 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      .+|++++|+.+|+++++++|++..+...++.+...+++
T Consensus       123 ~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~  160 (723)
T 4gyw_A          123 DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD  160 (723)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence            99999999999999999999999988888877665444

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.55  E-value=1.2e-13  Score=123.39  Aligned_cols=118  Identities=13%  Similarity=0.107  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHhCCCCH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL-----------QNFTEAVADANRAIELEPSMS   70 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~l-----------g~~~eAl~~~~~Al~l~p~~~   70 (379)
                      +..++..|.+++..|++++|+..|++++.++|+++.+++++|.++..+           |++++|+..|.+++.++|++.
T Consensus        39 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~  118 (217)
T 2pl2_A           39 PEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA  118 (217)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccH
Confidence            456788899999999999999999999999999999999999999999           999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           71 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        71 ~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      .+++.+|.+|..+|++++|+.+|+++++++ ++..+...++.+...+++.
T Consensus       119 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~  167 (217)
T 2pl2_A          119 PLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRL  167 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCH
Confidence            999999999999999999999999999999 8888888887777666654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.54  E-value=4.3e-14  Score=137.95  Aligned_cols=115  Identities=7%  Similarity=-0.031  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDY-FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~-y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~   80 (379)
                      +..++.+|.++...|+ |++|+.+|+++|.++|+++.+|++||.++..+|++++|+.+|.+|+.++|.+..+|+.+|.++
T Consensus       131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~  210 (382)
T 2h6f_A          131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVI  210 (382)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHH
Confidence            4578999999999997 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (379)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (379)
                      ..+|++++|+.+|+++++++|++..++..++.+...
T Consensus       211 ~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          211 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  246 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999888888666

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.54  E-value=1.2e-14  Score=139.39  Aligned_cols=118  Identities=22%  Similarity=0.296  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA-----------------ELFADRAQASIKLQNFTEAVADANRAIE   64 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~-----------------~~~~~ra~~~~~lg~~~eAl~~~~~Al~   64 (379)
                      +..++.+|+.++..|+|++|+.+|.++|.+.|.+.                 .+|+++|.||+++|+|++|+.+|.+++.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~  258 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT  258 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999877                 3899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           65 LEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        65 l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      ++|.+..+|+++|.+|+.+|+|++|+.+|+++++++|++..+...+..+...+..
T Consensus       259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~  313 (338)
T 2if4_A          259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA  313 (338)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988888887555444

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.53  E-value=3.5e-14  Score=120.70  Aligned_cols=107  Identities=14%  Similarity=0.221  Sum_probs=97.6

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973           12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNF----------TEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus        12 ~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~----------~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      .-+.+.|++|+..|.++++++|+++.+|+++|.++..++++          ++|+..|++|++++|++..+|+++|.+|.
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            34667899999999999999999999999999999999876          59999999999999999999999999999


Q ss_pred             hcc-----------CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 016973           82 KLE-----------EYETAKVALEKGASLAPGDSRFTNLIKECEERIA  118 (379)
Q Consensus        82 ~lg-----------~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~  118 (379)
                      .+|           +|++|+.+|++|++++|++..+...+..+.....
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~e  139 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQ  139 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHH
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCHh
Confidence            885           8999999999999999999988888777665443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.52  E-value=9.5e-14  Score=108.29  Aligned_cols=102  Identities=17%  Similarity=0.201  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATAC   80 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~--~~~a~~~la~~~   80 (379)
                      ..++..|..++..|++++|+.+|.+++..+|.+..+++++|.+++.+|++++|+..+.+++.++|.  +..+++.+|.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~   86 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL   86 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence            456788999999999999999999999999999999999999999999999999999999999999  999999999999


Q ss_pred             Hhc-cCHHHHHHHHHHHHhcCCCCh
Q 016973           81 MKL-EEYETAKVALEKGASLAPGDS  104 (379)
Q Consensus        81 ~~l-g~y~~A~~~~~~a~~l~p~~~  104 (379)
                      ..+ |++++|+.+|++++...|.+.
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           87 RYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHhCCHHHHHHHHHHHhhcccCCC
Confidence            999 999999999999999999764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.51  E-value=1.6e-13  Score=127.94  Aligned_cols=102  Identities=28%  Similarity=0.416  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +..++..|+.++..|+|++|+..|++++..+|.++.+++++|.+|..+|++++|+.++.+++.++|.+..+++++|.+|+
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCC
Q 016973           82 KLEEYETAKVALEKGASLAPGD  103 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~  103 (379)
                      .+|+|++|+..|+++++++|++
T Consensus        84 ~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           84 EMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999876

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.51  E-value=3.1e-13  Score=120.59  Aligned_cols=118  Identities=14%  Similarity=0.083  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-------HHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS-------KAYWR   75 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~-------~a~~~   75 (379)
                      ..++..|.+++..|+|++|+..|.+++..+|.+..+++.+|.+|..+|++++|+..+.+++.++|.+.       .+++.
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  122 (228)
T 4i17_A           43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLK  122 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            35677999999999999999999999999999999999999999999999999999999999999998       77999


Q ss_pred             HHHHHHhccCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHhh
Q 016973           76 KATACMKLEEYETAKVALEKGASLAPG--DSRFTNLIKECEERIAEE  120 (379)
Q Consensus        76 la~~~~~lg~y~~A~~~~~~a~~l~p~--~~~~~~~l~~~~~~l~~~  120 (379)
                      +|.+++.+|++++|+.+|+++++++|+  +......++.+...++..
T Consensus       123 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          123 EGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999  888888888887766654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.50  E-value=5.7e-13  Score=114.18  Aligned_cols=115  Identities=17%  Similarity=0.162  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHccCH--HHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQA-SIKLQNF--TEAVADANRAIELEPSMSKAYWRKAT   78 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~-~~~lg~~--~eAl~~~~~Al~l~p~~~~a~~~la~   78 (379)
                      +..++..|.+++..|+|++|+.+|.+++.++|.++.+++.+|.+ ++..|++  ++|+..+.+++.++|.+..+++.+|.
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  123 (177)
T 2e2e_A           44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLAS  123 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999 8899999  99999999999999999999999999


Q ss_pred             HHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973           79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (379)
Q Consensus        79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (379)
                      +|+.+|++++|+.+|++++.++|++......+..+...
T Consensus       124 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~~  161 (177)
T 2e2e_A          124 DAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMA  161 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Confidence            99999999999999999999999987766655555443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.50  E-value=7.1e-13  Score=117.54  Aligned_cols=106  Identities=16%  Similarity=0.154  Sum_probs=94.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-----
Q 016973            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK-----   82 (379)
Q Consensus         8 ~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~-----   82 (379)
                      .|.+++..|+|++|+..|+++|.++|+++.+++++|.+|..+|++++|+.+|++++.++|+++.+++.+|.+|+.     
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~  139 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE  139 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999888888877654     


Q ss_pred             ------------------------------ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 016973           83 ------------------------------LEEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (379)
Q Consensus        83 ------------------------------lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (379)
                                                    +|+|++|+.+|+++++++|+.. ....+.++.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~l~~i~  200 (208)
T 3urz_A          140 KKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE-AQKTLDKIL  200 (208)
T ss_dssp             HHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH-HHHHHHHHH
Confidence                                          3468899999999999999743 444455543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.50  E-value=3.4e-14  Score=114.12  Aligned_cols=101  Identities=17%  Similarity=0.092  Sum_probs=90.2

Q ss_pred             HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHH
Q 016973           14 IDDYFELAYDLYSQAIEI---SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK   90 (379)
Q Consensus        14 ~~g~y~~Al~~y~~al~~---~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~   90 (379)
                      ..|++++|+.+|+++|..   +|.+..+++++|.+|+.+|+|++|+..|.+++.++|+++.+++.+|.+|+.+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   68889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHH
Q 016973           91 VALEKGASLAPGDSRFTNLIKECE  114 (379)
Q Consensus        91 ~~~~~a~~l~p~~~~~~~~l~~~~  114 (379)
                      ..|++++.+.|+++.+......+.
T Consensus        82 ~~~~~al~~~p~~~~~~~~~~ai~  105 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQSYKQAIL  105 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHH
Confidence            999999999999998766554443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.47  E-value=1.6e-12  Score=111.73  Aligned_cols=119  Identities=22%  Similarity=0.165  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +..+...|.+++..|++++|+..+.+++...|.+..++..+|.++...++++.|+..+.+++.++|.+..+++.+|.+|.
T Consensus        39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~  118 (184)
T 3vtx_A           39 VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD  118 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            34677888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      .+|+|++|+.+|+++++++|++..+...++.+...+++.
T Consensus       119 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~  157 (184)
T 3vtx_A          119 SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR  157 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence            888888888888888888888888888887777766654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.45  E-value=3.3e-12  Score=112.14  Aligned_cols=103  Identities=15%  Similarity=0.086  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------------
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS------------   70 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~------------   70 (379)
                      ..++..|.+++..|+|++|+..|.+++..+|.+..+++++|.+|..+|++++|+.+|.+++.+.|.+.            
T Consensus        38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  117 (213)
T 1hh8_A           38 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFK  117 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCE
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccC
Confidence            45677888888888888888888888888888888888888888888888888888888888777655            


Q ss_pred             ----HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChH
Q 016973           71 ----KAYWRKATACMKLEEYETAKVALEKGASLAPGDSR  105 (379)
Q Consensus        71 ----~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~  105 (379)
                          .+++.+|.+|+.+|++++|+.+|+++++++|++..
T Consensus       118 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  156 (213)
T 1hh8_A          118 LFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  156 (213)
T ss_dssp             EEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             ccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence                78888888888888888888888888888886543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.44  E-value=2e-13  Score=137.01  Aligned_cols=115  Identities=30%  Similarity=0.501  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..++.+|..++..|+|++|+.+|+++++++|.+..+++++|.+|.++|+|++|+.+|.+|++++|.++.+++++|.+|+.
T Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   86 (477)
T 1wao_1            7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   86 (477)
T ss_dssp             TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            44566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l  117 (379)
                      +|+|++|+.+|+++++++|++..+...+..+...+
T Consensus        87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~  121 (477)
T 1wao_1           87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV  121 (477)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999988888884443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.44  E-value=3e-12  Score=102.35  Aligned_cols=116  Identities=21%  Similarity=0.317  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..++..|..++..|++++|+..|.+++..+|.+...+..+|.++...|++++|+..+.+++.+.|....+++.+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA  118 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~  118 (379)
                      +|++++|+..|.+++.+.|.+......+..+...++
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  117 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG  117 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Confidence            999999999999999999998887777766655443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.44  E-value=1.7e-12  Score=116.31  Aligned_cols=111  Identities=32%  Similarity=0.470  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..+...|..++..|+|++|+..|++++..+|.+..+++.+|.++..+|++++|+..+.+++.++|.++.+++.+|.++..
T Consensus       140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  219 (258)
T 3uq3_A          140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA  219 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcC------CCChHHHHHHHHH
Q 016973           83 LEEYETAKVALEKGASLA------PGDSRFTNLIKEC  113 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~------p~~~~~~~~l~~~  113 (379)
                      +|++++|+.+|+++++++      |++..+...+.+|
T Consensus       220 ~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          220 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            999999999999999999      8888877777654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.43  E-value=4e-12  Score=115.41  Aligned_cols=112  Identities=21%  Similarity=0.101  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +..++..|..++..|++++|+.+|.+++..+|.+..++..+|.+|..+|++++|+..|.+++.++|.+..+++.+|.+|+
T Consensus        43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  122 (275)
T 1xnf_A           43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  122 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (379)
                      .+|++++|+.+|++++.++|++.....++..+
T Consensus       123 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  154 (275)
T 1xnf_A          123 YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA  154 (275)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            99999999999999999999998665555443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.43  E-value=1.5e-12  Score=118.88  Aligned_cols=106  Identities=14%  Similarity=0.144  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWR   75 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~---~~~a~~~   75 (379)
                      +..++..|..++..|+|++|+..|.+++..+|.+   ..+++.+|.||+++|+|++|+..|.+++.+.|.   ...+++.
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~   94 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE   94 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence            4678999999999999999999999999999999   899999999999999999999999999999884   4789999


Q ss_pred             HHHHHHh--------ccCHHHHHHHHHHHHhcCCCChHHH
Q 016973           76 KATACMK--------LEEYETAKVALEKGASLAPGDSRFT  107 (379)
Q Consensus        76 la~~~~~--------lg~y~~A~~~~~~a~~l~p~~~~~~  107 (379)
                      +|.+++.        +|++++|+..|++++.++|++....
T Consensus        95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  134 (261)
T 3qky_A           95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD  134 (261)
T ss_dssp             HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH
Confidence            9999999        9999999999999999999987665

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.43  E-value=7.3e-14  Score=118.50  Aligned_cols=101  Identities=11%  Similarity=-0.058  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973           20 LAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL   99 (379)
Q Consensus        20 ~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l   99 (379)
                      .+-..|.+++.++|+++.+++.+|.+++++|+|++|+..|.+++.++|.++.+|+.+|.+|+.+|+|++|+.+|++++++
T Consensus        20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l   99 (151)
T 3gyz_A           20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL   99 (151)
T ss_dssp             HTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            34455888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHhh
Q 016973          100 APGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus       100 ~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +|+++.+...++.|...+++.
T Consensus       100 ~P~~~~~~~~lg~~~~~lg~~  120 (151)
T 3gyz_A          100 GKNDYTPVFHTGQCQLRLKAP  120 (151)
T ss_dssp             SSSCCHHHHHHHHHHHHTTCH
T ss_pred             CCCCcHHHHHHHHHHHHcCCH
Confidence            999999999999998887775

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.42  E-value=1.4e-13  Score=107.91  Aligned_cols=94  Identities=19%  Similarity=0.291  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM------SKAYWR   75 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~------~~a~~~   75 (379)
                      +..++..|..++..|+|++|+..|++++..+|.++.+++++|.||+.+|++++|+.+|.+++.++|.+      ..++++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999998      899999


Q ss_pred             HHHHHHhccCHHHHHHHHHH
Q 016973           76 KATACMKLEEYETAKVALEK   95 (379)
Q Consensus        76 la~~~~~lg~y~~A~~~~~~   95 (379)
                      +|.++..+|+++.|+..|++
T Consensus        84 ~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           84 LELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHhHhhhHhHHHH
Confidence            99999999988887766544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.41  E-value=2.9e-12  Score=112.54  Aligned_cols=115  Identities=19%  Similarity=0.180  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..++..|..++..|+|++|+..|.+++  ++ ++.+++++|.+|..+|++++|+..|.+++.++|.+..+++.+|.+|+.
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            467899999999999999999999996  33 689999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCCh----------------HHHHHHHHHHHHHHhh
Q 016973           83 LEEYETAKVALEKGASLAPGDS----------------RFTNLIKECEERIAEE  120 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~----------------~~~~~l~~~~~~l~~~  120 (379)
                      +|+|++|+.+|++++++.|.+.                .+...++.+...+++.
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  137 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW  137 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH
Confidence            9999999999999999999877                6777777766655443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.41  E-value=8.7e-12  Score=105.57  Aligned_cols=117  Identities=13%  Similarity=0.145  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..+...|..++..|++++|+.+|.+++..+|.+..++..+|.++...|++++|+..+.+++.++|.+..+++.+|.++..
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~  122 (186)
T 3as5_A           43 DVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN  122 (186)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH
Confidence            45677888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      +|++++|+..|++++...|.+......++.+...+++
T Consensus       123 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  159 (186)
T 3as5_A          123 LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR  159 (186)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             cCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC
Confidence            8888888888888888888888777777776655444

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.38  E-value=1.5e-11  Score=115.36  Aligned_cols=116  Identities=19%  Similarity=0.217  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE----LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~----~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~   80 (379)
                      .+..|..++..|++++|+..|.+++...|.+..    ++..+|.++.++|++++|+..+.+++.++|.++.+++.+|.+|
T Consensus       237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  316 (359)
T 3ieg_A          237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY  316 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            456699999999999999999999999999874    4677999999999999999999999999999999999999999


Q ss_pred             HhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      ..+|++++|+.+|+++++++|++..+...+..+...+++.
T Consensus       317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  356 (359)
T 3ieg_A          317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS  356 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999888765

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.38  E-value=3.6e-12  Score=127.60  Aligned_cols=118  Identities=14%  Similarity=0.021  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFID---------DYFELAYDLYSQAIEISPNSAELFADRAQASIKL--------QNFTEAVADANRAIEL   65 (379)
Q Consensus         3 ~~l~~~g~~~~~~---------g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~l--------g~~~eAl~~~~~Al~l   65 (379)
                      ..+...|.+++..         |+|++|+.+|.+++.++|++..+++++|.+|..+        |++++|+..|.+|+.+
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  250 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV  250 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence            4677889999999         9999999999999999999999999999999999        9999999999999999


Q ss_pred             CC---CCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           66 EP---SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        66 ~p---~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +|   .++.+|+.+|.+|+.+|+|++|+.+|+++++++|++..+...++.+...+++.
T Consensus       251 ~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~  308 (474)
T 4abn_A          251 DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRL  308 (474)
T ss_dssp             CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            99   99999999999999999999999999999999999999888888888887776

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.38  E-value=8.3e-12  Score=99.32  Aligned_cols=102  Identities=16%  Similarity=0.191  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 016973           19 ELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGAS   98 (379)
Q Consensus        19 ~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~   98 (379)
                      +.|+..|.+++..+|.++.+++.+|.+|+.+|++++|+..|.+++.++|.+..+++.+|.+|..+|++++|+.+|++++.
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCC--ChHHHHHHHHHHHHHHhh
Q 016973           99 LAPG--DSRFTNLIKECEERIAEE  120 (379)
Q Consensus        99 l~p~--~~~~~~~l~~~~~~l~~~  120 (379)
                      ++|.  +......+..+...++..
T Consensus        82 ~~~~~~~~~~~~~l~~~l~~l~~~  105 (115)
T 2kat_A           82 AAQSRGDQQVVKELQVFLRRLARE  105 (115)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             hccccccHHHHHHHHHHHHHhccc
Confidence            9884  444555555555555554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.38  E-value=9.2e-12  Score=111.49  Aligned_cols=107  Identities=17%  Similarity=0.143  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSK---AYWR   75 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~---a~~~   75 (379)
                      +..++..|..++..|+|++|+..|++++...|.+   ..+++.+|.||+++|++++|+..|.+++.++|++..   +++.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            4678999999999999999999999999999887   478999999999999999999999999999998764   8999


Q ss_pred             HHHHHHh------------------ccCHHHHHHHHHHHHhcCCCChHHHH
Q 016973           76 KATACMK------------------LEEYETAKVALEKGASLAPGDSRFTN  108 (379)
Q Consensus        76 la~~~~~------------------lg~y~~A~~~~~~a~~l~p~~~~~~~  108 (379)
                      +|.+++.                  +|++++|+..|+++++.+|++..+..
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~  134 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD  134 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHH
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            9999986                  67999999999999999999886543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.37  E-value=7.4e-12  Score=127.56  Aligned_cols=116  Identities=15%  Similarity=0.082  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +..++..|..++..|+|++|+..|+++++++|++..+++++|.+|..+|++++|+..|++++.++|.+..+++.+|.+|.
T Consensus        23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  102 (568)
T 2vsy_A           23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALE  102 (568)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l  117 (379)
                      .+|++++|+.+|+++++++|++..+...++.+...+
T Consensus       103 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  138 (568)
T 2vsy_A          103 DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL  138 (568)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999998888888777766

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.37  E-value=8.5e-12  Score=118.32  Aligned_cols=119  Identities=15%  Similarity=0.195  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +..+...|..++..|++++|+.+|.+++..+|.++.+++++|.++..+|++++|+..|.+++.++|.+..+++.+|.+|.
T Consensus       217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  296 (368)
T 1fch_A          217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI  296 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            35678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCC-----------hHHHHHHHHHHHHHHhh
Q 016973           82 KLEEYETAKVALEKGASLAPGD-----------SRFTNLIKECEERIAEE  120 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~-----------~~~~~~l~~~~~~l~~~  120 (379)
                      .+|++++|+..|++++.++|++           ...+..+..+...+++.
T Consensus       297 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  346 (368)
T 1fch_A          297 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS  346 (368)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence            9999999999999999999988           67777888887777765

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.37  E-value=2.1e-11  Score=108.48  Aligned_cols=117  Identities=16%  Similarity=0.155  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..+...|..++..|++++|+.+|.+++..+|.+..++..+|.++..+|++++|+..+.+++.++|.+..+++.+|.+++.
T Consensus        58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~  137 (243)
T 2q7f_A           58 IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK  137 (243)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            35566777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      +|++++|+..|++++.++|++..+...++.+...++.
T Consensus       138 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  174 (243)
T 2q7f_A          138 LEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM  174 (243)
T ss_dssp             TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             hccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC
Confidence            7777777777777777777777766666665554443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.37  E-value=7.1e-12  Score=106.12  Aligned_cols=119  Identities=13%  Similarity=0.049  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +..++..|..++..|++++|+..|.+++..+|.+..+++.+|.++...|++++|+..+.+++.++|.+..+++.+|.+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      ..|++++|+..|++++.++|.+......++.+...++..
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  126 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRF  126 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcH
Confidence            999999999999999999999998887777776655443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.37  E-value=8.2e-12  Score=111.85  Aligned_cols=119  Identities=15%  Similarity=0.172  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHccCHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIE--------------------------ISPNSAELFADRAQASIKLQNFTEA   55 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~--------------------------~~p~~~~~~~~ra~~~~~lg~~~eA   55 (379)
                      +..+...|..++..|++++|+..|.+++.                          .+|.+..++..+|.+++.+|++++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  158 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA  158 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence            45678899999999999999999999999                          6667788999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           56 VADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        56 l~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +..+.+++.++|.++.+++.+|.++..+|++++|+.+|+++++++|++......++.+...+++.
T Consensus       159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~  223 (258)
T 3uq3_A          159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEY  223 (258)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhH
Confidence            99999999999999999999999999999999999999999999999999888888887766554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.36  E-value=4.4e-12  Score=126.95  Aligned_cols=115  Identities=15%  Similarity=0.071  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYF-ELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y-~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~   80 (379)
                      +..++.+|..++..|+| ++|+.+|++++.++|.+..+++.+|.+|..+|++++|+.+|.+|+.++|+ ..+++.+|.+|
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~  180 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVL  180 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHH
Confidence            46788999999999999 99999999999999999999999999999999999999999999999998 79999999999


Q ss_pred             Hhc---------cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973           81 MKL---------EEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (379)
Q Consensus        81 ~~l---------g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l  117 (379)
                      ..+         |++++|+.+|+++++++|++..++..++.+...+
T Consensus       181 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  226 (474)
T 4abn_A          181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSL  226 (474)
T ss_dssp             TTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999         9999999999999999999999888888887666

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.36  E-value=1.4e-11  Score=115.43  Aligned_cols=110  Identities=14%  Similarity=0.179  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      ++.++..|..++..|+|++|+.+|.+++..+|.++.+++.+|.+++.+|++++|+..+.+++.++|.+..+++.+|.++.
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL   82 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCC---CChHHHHHHH
Q 016973           82 KLEEYETAKVALEKGASLAP---GDSRFTNLIK  111 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p---~~~~~~~~l~  111 (379)
                      .+|++++|+..|++++.++|   ++......+.
T Consensus        83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~  115 (359)
T 3ieg_A           83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV  115 (359)
T ss_dssp             HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             HcCChHHHHHHHHHHHhcCCcccChHHHHHHHH
Confidence            99999999999999999999   7777666553

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.36  E-value=1.6e-11  Score=109.30  Aligned_cols=118  Identities=14%  Similarity=0.135  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..+...|..++..|++++|+..|.+++..+|.+..++..+|.++..+|++++|+..+.+++.++|.+..+++.+|.+++.
T Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  171 (243)
T 2q7f_A           92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN  171 (243)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +|++++|+..|++++.++|++......++.+...+++.
T Consensus       172 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  209 (243)
T 2q7f_A          172 EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENR  209 (243)
T ss_dssp             HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCT
T ss_pred             cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCH
Confidence            99999999999999999999988888888777665543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.36  E-value=2.5e-12  Score=105.15  Aligned_cols=94  Identities=18%  Similarity=0.165  Sum_probs=86.8

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHH
Q 016973           27 QAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF  106 (379)
Q Consensus        27 ~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~  106 (379)
                      ++..++|+.+..+.++|.+|++.|+|++|+..|.+|+.++|.++.+|+.+|.+|+.+|++++|+.+|+++++++|++..+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            45567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 016973          107 TNLIKECEERIAEE  120 (379)
Q Consensus       107 ~~~l~~~~~~l~~~  120 (379)
                      ...++.+...+++.
T Consensus        84 ~~~lg~~~~~~~~~   97 (126)
T 4gco_A           84 YIRKAACLVAMREW   97 (126)
T ss_dssp             HHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHCCCH
Confidence            99999888877665

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.36  E-value=1.7e-12  Score=135.84  Aligned_cols=117  Identities=9%  Similarity=-0.083  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..++.+|..++..|+|++|+..|+++++.+|++..+++++|.+|+.+|++++|+.+|++|++++|+++.+++.+|.+|+.
T Consensus       434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~  513 (681)
T 2pzi_A          434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL  513 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +|+|++ +.+|+++++++|++..+...++.+...+++.
T Consensus       514 ~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~  550 (681)
T 2pzi_A          514 AGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDR  550 (681)
T ss_dssp             HTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             cCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCH
Confidence            999999 9999999999999999888888888777665

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.35  E-value=7.7e-12  Score=119.09  Aligned_cols=118  Identities=16%  Similarity=0.229  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..+...|..++..|++++|+.+|.+++..+|.++.++.++|.+|..+|++++|+..|.+++.++|.++.+++.+|.+|..
T Consensus       214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  293 (365)
T 4eqf_A          214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN  293 (365)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            45677788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             ccCHHHHHHHHHHHHhcCCCC------------hHHHHHHHHHHHHHHhh
Q 016973           83 LEEYETAKVALEKGASLAPGD------------SRFTNLIKECEERIAEE  120 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~------------~~~~~~l~~~~~~l~~~  120 (379)
                      +|++++|+.+|+++++++|++            ..++..+..+...++..
T Consensus       294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  343 (365)
T 4eqf_A          294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP  343 (365)
T ss_dssp             HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred             CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence            888888888888888887763            34555556555555443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.35  E-value=1.1e-11  Score=115.52  Aligned_cols=118  Identities=14%  Similarity=0.050  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH------------------------
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVAD------------------------   58 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~------------------------   58 (379)
                      +.++..|..++..|++++|+..|++++..+|+++.+++.+|.+|..+|++++|+..                        
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~  197 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLX  197 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHh
Confidence            46788999999999999999999999999999999999999999999999887544                        


Q ss_pred             ----------HHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhh
Q 016973           59 ----------ANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD--SRFTNLIKECEERIAEE  120 (379)
Q Consensus        59 ----------~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~--~~~~~~l~~~~~~l~~~  120 (379)
                                +.+++.++|++..+++.+|.+|..+|++++|+..|+++++++|++  ..+...+..+...++..
T Consensus       198 ~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  271 (287)
T 3qou_A          198 QAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG  271 (287)
T ss_dssp             HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred             hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence                      555577799999999999999999999999999999999999998  66777777777766653

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.35  E-value=1.3e-11  Score=112.49  Aligned_cols=116  Identities=18%  Similarity=0.086  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH--------ccCHHHHHHHHHHHHHhCCCCH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIK--------LQNFTEAVADANRAIELEPSMS   70 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~--------lg~~~eAl~~~~~Al~l~p~~~   70 (379)
                      +..++..|.+++..|+|++|+..|++++..+|.+   ..+++.+|.|++.        +|++++|+..|.+++.+.|++.
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  131 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE  131 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence            4578999999999999999999999999998855   6789999999999        9999999999999999999876


Q ss_pred             HHH-----------------HHHHHHHHhccCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHH
Q 016973           71 KAY-----------------WRKATACMKLEEYETAKVALEKGASLAPGD---SRFTNLIKECEERI  117 (379)
Q Consensus        71 ~a~-----------------~~la~~~~~lg~y~~A~~~~~~a~~l~p~~---~~~~~~l~~~~~~l  117 (379)
                      .+.                 +.+|.+|+.+|+|++|+..|++++...|++   ..+...++.+...+
T Consensus       132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~  198 (261)
T 3qky_A          132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY  198 (261)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence            655                 899999999999999999999999999985   44666777776655

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.34  E-value=1e-11  Score=112.74  Aligned_cols=117  Identities=16%  Similarity=0.129  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..+...|.+++..|++++|+..|.+++..+|.+..++..+|.+|..+|++++|+..+.+++.++|.+..+++.+|..++.
T Consensus        75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  154 (272)
T 3u4t_A           75 ADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY  154 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence            45677778888888888888888888888887777788888888888888888888888888788788888888844445


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      .+++++|+..|+++++++|++......++.+...++.
T Consensus       155 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~  191 (272)
T 3u4t_A          155 NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP  191 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence            5588888888888888888777776667666665543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.34  E-value=2.8e-11  Score=105.99  Aligned_cols=117  Identities=12%  Similarity=0.040  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..++..|..++..|++++|+.+|.+++..+|.+..++..+|.++..+|++++|+..+.+++.++|.+..+++.+|.+++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~   88 (225)
T 2vq2_A            9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG   88 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            45677888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             c-cCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHHHh
Q 016973           83 L-EEYETAKVALEKGAS--LAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        83 l-g~y~~A~~~~~~a~~--l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      + |++++|+..|++++.  ..|.+......++.+...+++
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  128 (225)
T 2vq2_A           89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ  128 (225)
T ss_dssp             TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC
Confidence            8 888888888888888  455555555566665554443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.33  E-value=3.3e-11  Score=96.14  Aligned_cols=101  Identities=24%  Similarity=0.396  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..+...|..++..|++++|+.+|.+++...|.+..+++.+|.++...|++++|+..+.+++.+.|....+++.+|.++..
T Consensus        36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  115 (136)
T 2fo7_A           36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK  115 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            35677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCC
Q 016973           83 LEEYETAKVALEKGASLAPGD  103 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~  103 (379)
                      +|++++|+..|.+++.++|++
T Consensus       116 ~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          116 QGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTC
T ss_pred             HccHHHHHHHHHHHHccCCCC
Confidence            999999999999999998863

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.33  E-value=1.9e-12  Score=108.85  Aligned_cols=100  Identities=17%  Similarity=0.131  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 016973           21 AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLA  100 (379)
Q Consensus        21 Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~  100 (379)
                      +-..|.+++.++|.+..+++.+|.+++..|+|++|+..|.+++.++|.++.+|+.+|.+|..+|+|++|+.+|++++.++
T Consensus         6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~   85 (148)
T 2vgx_A            6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD   85 (148)
T ss_dssp             CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHhh
Q 016973          101 PGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus       101 p~~~~~~~~l~~~~~~l~~~  120 (379)
                      |++..+...++.+...+++.
T Consensus        86 p~~~~~~~~lg~~~~~~g~~  105 (148)
T 2vgx_A           86 IXEPRFPFHAAECLLQXGEL  105 (148)
T ss_dssp             TTCTHHHHHHHHHHHHTTCH
T ss_pred             CCCchHHHHHHHHHHHcCCH
Confidence            99999988888887776664

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.33  E-value=6e-12  Score=114.34  Aligned_cols=119  Identities=13%  Similarity=0.025  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--C-CHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP--S-MSKAYWRKAT   78 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p--~-~~~a~~~la~   78 (379)
                      .+.++..|..++..|+|++|+..|++++..+|.+..+++.+|.+|+.+|++++|+..+.+++...+  . ...+++.+|.
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK   82 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence            356789999999999999999999999999999999999999999999999999999999999432  2 2566999999


Q ss_pred             HHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      ++..+|++++|+.+|+++++++|++..+...++.+...+++.
T Consensus        83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~  124 (272)
T 3u4t_A           83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNF  124 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCH
T ss_pred             HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCH
Confidence            999999999999999999999999999988888888777665

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.32  E-value=3.5e-12  Score=133.40  Aligned_cols=112  Identities=10%  Similarity=-0.064  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +..++.+|.+++..|+|++|+..|+++++++|+++.+++++|.+|.++|++++ +.+|++|++++|.+..+++++|.+|.
T Consensus       467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~  545 (681)
T 2pzi_A          467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARS  545 (681)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (379)
                      .+|++++|+.+|+++++++|++..+...++.+.
T Consensus       546 ~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~  578 (681)
T 2pzi_A          546 AEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL  578 (681)
T ss_dssp             HTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence            999999999999999999999988877776664

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.32  E-value=1.2e-11  Score=117.66  Aligned_cols=116  Identities=16%  Similarity=0.117  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~--~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      +...|..+...|++++|+.+|.+++..+|.  ++.+++++|.+|..+|++++|+..|.+++.++|.++.+++.+|.+|..
T Consensus       180 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  259 (365)
T 4eqf_A          180 TRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN  259 (365)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            345588999999999999999999999999  899999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +|++++|+.+|+++++++|++..+...++.+...+++.
T Consensus       260 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  297 (365)
T 4eqf_A          260 GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY  297 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred             cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence            99999999999999999999999888888887776654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.32  E-value=4.2e-11  Score=104.89  Aligned_cols=118  Identities=16%  Similarity=0.087  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL-QNFTEAVADANRAIE--LEPSMSKAYWRKATA   79 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~l-g~~~eAl~~~~~Al~--l~p~~~~a~~~la~~   79 (379)
                      ..+...|..++..|++++|+.+|.+++..+|.+..++..+|.++..+ |++++|+..+.+++.  ..|....+++.+|.+
T Consensus        43 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  122 (225)
T 2vq2_A           43 LAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC  122 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHH
Confidence            35667788888888888888888888888888888888888888888 888888888888888  556667888888888


Q ss_pred             HHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        80 ~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +..+|++++|+..|++++.++|.+......++.+...+++.
T Consensus       123 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A          123 SAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence            88888888888888888888888887777777766655543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.31  E-value=2.2e-11  Score=109.39  Aligned_cols=115  Identities=17%  Similarity=0.084  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..++..|..++..|++++|+.+|.+++..+|.+..+++.+|.+|..+|++++|+..+.+++.++|.+..+++.+|.+|+.
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  117 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE  117 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH
Confidence            45566677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             ccCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHH
Q 016973           83 LEEYETAKVALEKGAS--LAPGDSRFTNLIKECEERI  117 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~--l~p~~~~~~~~l~~~~~~l  117 (379)
                      +|++++|+.+|++++.  ..|.+..+...++.+...+
T Consensus       118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  154 (252)
T 2ho1_A          118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM  154 (252)
T ss_dssp             TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHT
T ss_pred             HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHc
Confidence            7777777777777766  5555555555555544433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.31  E-value=3.2e-11  Score=108.35  Aligned_cols=117  Identities=15%  Similarity=0.110  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE--LEPSMSKAYWRKATAC   80 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~--l~p~~~~a~~~la~~~   80 (379)
                      ..+...|..++..|++++|+.+|.+++..+|.+..++..+|.+|..+|++++|+..+.+++.  ..|....+++.+|.++
T Consensus        72 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~  151 (252)
T 2ho1_A           72 DAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVS  151 (252)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHH
Confidence            45667788888888888888888888888888888888888888888888888888888887  7777778888888888


Q ss_pred             HhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      +.+|++++|+.+|++++.++|.+..+...++.+...++.
T Consensus       152 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  190 (252)
T 2ho1_A          152 LQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE  190 (252)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred             HHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Confidence            888888888888888888888877777666666555444

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.31  E-value=1.5e-11  Score=105.68  Aligned_cols=116  Identities=11%  Similarity=0.071  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH-------------------------
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVAD-------------------------   58 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~-------------------------   58 (379)
                      .++..|..++..|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..                         
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~   87 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ   87 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence            4677888888888888888888888888888888888888888888887776554                         


Q ss_pred             ---------HHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHh
Q 016973           59 ---------ANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD--SRFTNLIKECEERIAE  119 (379)
Q Consensus        59 ---------~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~--~~~~~~l~~~~~~l~~  119 (379)
                               +.+++.++|+++.+++.+|.++..+|++++|+..|+++++++|+.  ..+...+..+...++.
T Consensus        88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~  159 (176)
T 2r5s_A           88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ  159 (176)
T ss_dssp             HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred             cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence                     444556678888899999999999999999999999999999875  4466666666665544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.30  E-value=2.3e-11  Score=116.98  Aligned_cols=117  Identities=19%  Similarity=0.162  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..+...|..++..|++++|+..|.+++..+|.++.++.++|.++.++|++++|+..|.+++.++|.+..+++.+|.++..
T Consensus       238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  317 (388)
T 1w3b_A          238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence            45677888999999999999999999999999888899999999999999999999999999999888999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      +|++++|+..|+++++++|++......+..+...+++
T Consensus       318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  354 (388)
T 1w3b_A          318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK  354 (388)
T ss_dssp             TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC
T ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence            9999999999999999988888877777776554443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.30  E-value=5.1e-11  Score=117.80  Aligned_cols=103  Identities=20%  Similarity=0.313  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      ++.++.+|..++..|+|++|+..|++++..+| ++.+++.+|.|++++|++++|+.+|.+++.++|.+..+++.+|.+|.
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   84 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE   84 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999 69999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChH
Q 016973           82 KLEEYETAKVALEKGASLAPGDSR  105 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~  105 (379)
                      .+|++++|+..|++++.++|.+..
T Consensus        85 ~~g~~~~A~~~~~~~~~~~~~~~~  108 (514)
T 2gw1_A           85 GLGKFADAMFDLSVLSLNGDFNDA  108 (514)
T ss_dssp             HTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred             HHhhHHHHHHHHHHHHhcCCCccc
Confidence            999999999999999999986654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.30  E-value=4e-11  Score=111.23  Aligned_cols=118  Identities=14%  Similarity=0.223  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..+...|..++..|++++|+.+|.+++..+|.+..++..+|.++..+|++++|+..+.+++.++|.+..+++.+|.++..
T Consensus       173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  252 (327)
T 3cv0_A          173 QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN  252 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCC------------ChHHHHHHHHHHHHHHhh
Q 016973           83 LEEYETAKVALEKGASLAPG------------DSRFTNLIKECEERIAEE  120 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~------------~~~~~~~l~~~~~~l~~~  120 (379)
                      +|++++|+..|++++.+.|+            +......+..+...+++.
T Consensus       253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  302 (327)
T 3cv0_A          253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP  302 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred             hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence            99999999999999999998            677777777777766654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.30  E-value=6.3e-11  Score=115.57  Aligned_cols=109  Identities=14%  Similarity=0.197  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +..++..|..++..|+|++|+.+|++++..+|.++.+++.+|.+|..+|++++|+.+|.+++.++|.+..+++.+|.+|.
T Consensus        26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  105 (450)
T 2y4t_A           26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL  105 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCCh---HHHHHH
Q 016973           82 KLEEYETAKVALEKGASLAPGDS---RFTNLI  110 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~---~~~~~l  110 (379)
                      .+|++++|+..|++++.++|++.   .....+
T Consensus       106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l  137 (450)
T 2y4t_A          106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQL  137 (450)
T ss_dssp             HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence            99999999999999999999987   554444

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.29  E-value=3.3e-11  Score=111.92  Aligned_cols=114  Identities=18%  Similarity=0.216  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEIS---------PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA   72 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~---------p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a   72 (379)
                      +..+...|..++..|++++|+..|.+++...         |....++..+|.+|..+|++++|+..+.+++.++|.+..+
T Consensus       193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  272 (330)
T 3hym_B          193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAST  272 (330)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHH
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHH
Confidence            3467889999999999999999999999986         6778899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 016973           73 YWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE  115 (379)
Q Consensus        73 ~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  115 (379)
                      ++.+|.+|..+|++++|+.+|+++++++|++......+..+..
T Consensus       273 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  315 (330)
T 3hym_B          273 YSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE  315 (330)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence            9999999999999999999999999999999998888887753

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.29  E-value=8.3e-11  Score=114.73  Aligned_cols=116  Identities=18%  Similarity=0.209  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSA----ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~----~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~   80 (379)
                      +...|..++..|++++|+.+|.+++...|.++    .++..+|.++.++|++++|+..+.+++.++|.+..+++.+|.+|
T Consensus       260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  339 (450)
T 2y4t_A          260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY  339 (450)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            35569999999999999999999999999984    47899999999999999999999999999999999999999999


Q ss_pred             HhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      ..+|++++|+.+|+++++++|++......+..+...++..
T Consensus       340 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  379 (450)
T 2y4t_A          340 LIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS  379 (450)
T ss_dssp             HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999999999888887765

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.28  E-value=5.1e-11  Score=114.48  Aligned_cols=116  Identities=15%  Similarity=0.092  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      .+...|..+...|++++|+..|++++..+|++..++.++|.++...|++++|+..|.+++.++|.+..+++.+|.+|..+
T Consensus       171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  250 (388)
T 1w3b_A          171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ  250 (388)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHc
Confidence            45556666666666666666666666666666666666666666666666666666666666666666666666666667


Q ss_pred             cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      |++++|+..|+++++++|++......+..+...++.
T Consensus       251 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  286 (388)
T 1w3b_A          251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS  286 (388)
T ss_dssp             TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC
T ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Confidence            777777777777766666666665555555444433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.28  E-value=3.2e-11  Score=107.96  Aligned_cols=118  Identities=11%  Similarity=0.064  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH------------------ccCHHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIK------------------LQNFTEAVADANR   61 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~---~~~~~ra~~~~~------------------lg~~~eAl~~~~~   61 (379)
                      ..++..|.+++..|+|++|+..|++++..+|++.   .+++.+|.++..                  +|++++|+..|.+
T Consensus        42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  121 (225)
T 2yhc_A           42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK  121 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHH
Confidence            4688999999999999999999999999999985   478999999987                  5789999999999


Q ss_pred             HHHhCCCCHHHH-----------------HHHHHHHHhccCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHHHhh
Q 016973           62 AIELEPSMSKAY-----------------WRKATACMKLEEYETAKVALEKGASLAPGDS---RFTNLIKECEERIAEE  120 (379)
Q Consensus        62 Al~l~p~~~~a~-----------------~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~---~~~~~l~~~~~~l~~~  120 (379)
                      ++...|++..+.                 +.+|.+|+.+|+|.+|+..|+++++..|+++   .+...++.+...++..
T Consensus       122 ~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~  200 (225)
T 2yhc_A          122 LVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMN  200 (225)
T ss_dssp             HHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc
Confidence            999999876544                 6789999999999999999999999999987   4566667776666554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.28  E-value=7.2e-12  Score=107.22  Aligned_cols=113  Identities=12%  Similarity=0.118  Sum_probs=99.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHhccCH
Q 016973            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA-CMKLEEY   86 (379)
Q Consensus         8 ~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~-~~~lg~y   86 (379)
                      .+..++..|+|++|+..|.+++..+|.++.+++.+|.+|+.+|++++|+..|.+++.++|.++.+++.+|.+ ++..|++
T Consensus        16 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~   95 (177)
T 2e2e_A           16 PLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQH   95 (177)
T ss_dssp             TTCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred             hhhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCc
Confidence            344567889999999999999999999999999999999999999999999999999999999999999999 8899999


Q ss_pred             --HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           87 --ETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        87 --~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                        ++|+.+|++++.++|++..+...++.+...++..
T Consensus        96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  131 (177)
T 2e2e_A           96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANY  131 (177)
T ss_dssp             CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccH
Confidence              9999999999999999999888888877665554

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.28  E-value=5.5e-11  Score=110.41  Aligned_cols=117  Identities=12%  Similarity=-0.016  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDD-YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         3 ~~l~~~g~~~~~~g-~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      ..++..|..++..| ++++|+.+|.+++..+|.+..++..+|.++..+|++++|+..+.+++.+.|....+++.+|.+|.
T Consensus        91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  170 (330)
T 3hym_B           91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG  170 (330)
T ss_dssp             HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            45677888888888 88888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      .+|++++|+..|++++.++|++..+...++.+...+++
T Consensus       171 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~  208 (330)
T 3hym_B          171 LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE  208 (330)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccc
Confidence            88888888888888888888888777777776655444

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.26  E-value=9.1e-11  Score=88.30  Aligned_cols=80  Identities=24%  Similarity=0.344  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      .++..|..++..|+|++|+.+|.+++..+|.+..+++++|.++..+|++++|+..+.+++.++|.+..+++.+|.++..+
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~   90 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ   90 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence            44555666666666666666666666666666666666666666666666666666666666666666666666655544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.26  E-value=1e-11  Score=102.93  Aligned_cols=98  Identities=14%  Similarity=0.137  Sum_probs=89.6

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 016973           23 DLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG  102 (379)
Q Consensus        23 ~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~  102 (379)
                      ..|.+++..+|.+...++.+|.+++..|+|++|+..|.+++.++|.++.+|+.+|.+|..+|+|++|+.+|++++.++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            56888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHhh
Q 016973          103 DSRFTNLIKECEERIAEE  120 (379)
Q Consensus       103 ~~~~~~~l~~~~~~l~~~  120 (379)
                      ++.....++.+...+++.
T Consensus        85 ~~~~~~~lg~~~~~~g~~  102 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDL  102 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCH
T ss_pred             CcHHHHHHHHHHHHcCCH
Confidence            999988888887776664

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.26  E-value=1.5e-11  Score=94.80  Aligned_cols=92  Identities=18%  Similarity=0.120  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE-LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~-~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      .+.+|..++..|+|++|+..|++++..+|.+.. +++++|.||+.+|++++|+.+|.+++.++|++..++++        
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence            467889999999999999999999999999998 99999999999999999999999999999998888754        


Q ss_pred             cCHHHHHHHHHHHHhcCCCCh
Q 016973           84 EEYETAKVALEKGASLAPGDS  104 (379)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~  104 (379)
                      +.+.+|+.+|.++..++|++.
T Consensus        75 ~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           75 KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHHHHHhccCcccc
Confidence            667778888888887777654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.25  E-value=7.9e-11  Score=111.56  Aligned_cols=105  Identities=14%  Similarity=0.119  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..++..|..++..|+|++|+.+|.+++..+|.+..+++.+|.+|..+|++++|+..|.+++.++|.+..+++.+|.+|..
T Consensus        65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  144 (368)
T 1fch_A           65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN  144 (368)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHH
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFT  107 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~  107 (379)
                      +|++++|+..|++++.++|.+....
T Consensus       145 ~g~~~~A~~~~~~~~~~~~~~~~~~  169 (368)
T 1fch_A          145 ESLQRQACEILRDWLRYTPAYAHLV  169 (368)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTGGGC
T ss_pred             cCCHHHHHHHHHHHHHhCcCcHHHH
Confidence            9999999999999999999877544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.23  E-value=1.6e-10  Score=108.14  Aligned_cols=111  Identities=10%  Similarity=-0.009  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRA--QASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra--~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      .+...|.++...|++++|+..|++++..+|.+....+..+  .++...|++++|+..|++++..+|.++.+++.+|.++.
T Consensus       132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~  211 (291)
T 3mkr_A          132 CMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHM  211 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            3445555566666666666666666665555543322222  22222355566666666666555555556666666666


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (379)
                      .+|++++|...|++++.++|+++.+...+..+.
T Consensus       212 ~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~  244 (291)
T 3mkr_A          212 AQGRWEAAEGVLQEALDKDSGHPETLINLVVLS  244 (291)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            666666666666666666665555554444433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.23  E-value=1.5e-10  Score=108.19  Aligned_cols=102  Identities=9%  Similarity=0.060  Sum_probs=93.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHH-H
Q 016973           11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET-A   89 (379)
Q Consensus        11 ~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~-A   89 (379)
                      .+...|++++|+.+|++++..+|.++.+++++|.|+.++|++++|+..|.+++.++|+++.+++++|.++..+|++.+ +
T Consensus       175 l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa  254 (291)
T 3mkr_A          175 LAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVT  254 (291)
T ss_dssp             HHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence            344559999999999999999999999999999999999999999999999999999999999999999999999986 5


Q ss_pred             HHHHHHHHhcCCCChHHHHHHHH
Q 016973           90 KVALEKGASLAPGDSRFTNLIKE  112 (379)
Q Consensus        90 ~~~~~~a~~l~p~~~~~~~~l~~  112 (379)
                      ..+++++++++|+++.+.....+
T Consensus       255 ~~~~~~~~~~~P~~~~~~d~~~~  277 (291)
T 3mkr_A          255 NRYLSQLKDAHRSHPFIKEYRAK  277 (291)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHH
Confidence            68999999999999987655433

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.22  E-value=4.2e-11  Score=119.42  Aligned_cols=103  Identities=25%  Similarity=0.378  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +..++..|..++..|+|++|+.+|++++..+|+++.+++.+|.||..+|++++|+..|.+++.++|.+..+++.+|.++.
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  104 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE  104 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChH
Q 016973           82 KLEEYETAKVALEKGASLAPGDSR  105 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~  105 (379)
                      .+|++++|+..|+ ++.++|+...
T Consensus       105 ~~g~~~~A~~~~~-~~~~~~~~~~  127 (537)
T 3fp2_A          105 SLGNFTDAMFDLS-VLSLNGDFDG  127 (537)
T ss_dssp             HHTCHHHHHHHHH-HHC-------
T ss_pred             HcCCHHHHHHHHH-HHhcCCCCCh
Confidence            9999999999996 8888887654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.22  E-value=1.1e-10  Score=111.49  Aligned_cols=96  Identities=17%  Similarity=0.156  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +..+++.|.+++..|+|++|+.+|+++|.++|+++.+++++|.+|+.+|++++|+.+|.+|+.++|.+..+++.+|.++.
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  275 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  275 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHH-HHHHHHH
Q 016973           82 KLEEYETAK-VALEKGA   97 (379)
Q Consensus        82 ~lg~y~~A~-~~~~~a~   97 (379)
                      .+|++++|. ..|++++
T Consensus       276 ~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          276 RIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            999999994 4555444

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.20  E-value=1.9e-10  Score=106.55  Aligned_cols=107  Identities=11%  Similarity=0.026  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..++.+|..++..|+|++|+.+|++++..+|.+..++..+|.++..+|++++|+..+.+++.++|.+..+++.+|.++..
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  101 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN  101 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHH
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNL  109 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~  109 (379)
                      +|++++|+..|++++.++|.+......
T Consensus       102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~  128 (327)
T 3cv0_A          102 EHNANAALASLRAWLLSQPQYEQLGSV  128 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTTTC---
T ss_pred             cCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence            999999999999999999987765443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.20  E-value=6.1e-10  Score=100.78  Aligned_cols=104  Identities=12%  Similarity=0.072  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----------
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS-----------   70 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~-----------   70 (379)
                      +..+...|..++..|++++|+.+|.+++..+|.+..+++.+|.+|..+|++++|+..+.+++.++|.+.           
T Consensus        77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  156 (275)
T 1xnf_A           77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ  156 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            356788999999999999999999999999999999999999999999999999999999999988753           


Q ss_pred             -----------------------------------------------------------HHHHHHHHHHHhccCHHHHHH
Q 016973           71 -----------------------------------------------------------KAYWRKATACMKLEEYETAKV   91 (379)
Q Consensus        71 -----------------------------------------------------------~a~~~la~~~~~lg~y~~A~~   91 (379)
                                                                                 .+++.+|.+|..+|++++|+.
T Consensus       157 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  236 (275)
T 1xnf_A          157 KLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATA  236 (275)
T ss_dssp             HHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHH
Confidence                                                                       667888999999999999999


Q ss_pred             HHHHHHhcCCCChH
Q 016973           92 ALEKGASLAPGDSR  105 (379)
Q Consensus        92 ~~~~a~~l~p~~~~  105 (379)
                      .|++++.++|++..
T Consensus       237 ~~~~al~~~p~~~~  250 (275)
T 1xnf_A          237 LFKLAVANNVHNFV  250 (275)
T ss_dssp             HHHHHHTTCCTTCH
T ss_pred             HHHHHHhCCchhHH
Confidence            99999999987754

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.20  E-value=2.7e-10  Score=95.18  Aligned_cols=97  Identities=18%  Similarity=0.236  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK--ATAC   80 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~l--a~~~   80 (379)
                      ..+...|.+++..|+|++|+..|.+++..+|.++.+++++|.++..+|++++|+..+.+++.++|.+..++..+  +..+
T Consensus        48 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~  127 (166)
T 1a17_A           48 IYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI  127 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999888554  4458


Q ss_pred             HhccCHHHHHHHHHHHHhc
Q 016973           81 MKLEEYETAKVALEKGASL   99 (379)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l   99 (379)
                      ..+|++++|+..+.++..+
T Consensus       128 ~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          128 VKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccchHHH
Confidence            8999999999998876543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.18  E-value=1.3e-10  Score=108.23  Aligned_cols=104  Identities=15%  Similarity=0.003  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCC-----
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKL-QNFTEAVADANRAIELEPSM-----   69 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~l-g~~~eAl~~~~~Al~l~p~~-----   69 (379)
                      +..+.+.|.++...|+|++|+.+|++++.+.+..      ..++.++|.+|... |++++|+.+|.+|+.+.|..     
T Consensus        77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~  156 (292)
T 1qqe_A           77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL  156 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence            4567889999999999999999999999997643      56889999999995 99999999999999998754     


Q ss_pred             -HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChH
Q 016973           70 -SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR  105 (379)
Q Consensus        70 -~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~  105 (379)
                       ..++.++|.+|..+|+|++|+.+|++++.+.|++..
T Consensus       157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  193 (292)
T 1qqe_A          157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence             568999999999999999999999999999987654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.18  E-value=1.7e-10  Score=114.94  Aligned_cols=116  Identities=15%  Similarity=0.186  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      .++..|..++..|++++|+.+|.+++..+|.++.++..+|.++..+|++++|+..|.+++.++|.+..+++.+|.+++.+
T Consensus       278 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  357 (537)
T 3fp2_A          278 SYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ  357 (537)
T ss_dssp             HHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            45666777777777777777777777777777777777777777777888888888877777777777777788888888


Q ss_pred             cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      |++++|+..|++++.++|++..+...++.+...++.
T Consensus       358 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  393 (537)
T 3fp2_A          358 GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD  393 (537)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence            888888888888777777777777666666555444

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.17  E-value=3.1e-10  Score=115.58  Aligned_cols=104  Identities=13%  Similarity=0.070  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +..++..|.+++..|++++|+.+|++++..+|++..+++++|.+|..+|++++|+..|.+++.++|.+..+++.+|.++.
T Consensus        57 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  136 (568)
T 2vsy_A           57 PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRR  136 (568)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hc---cCHHHHHHHHHHHHhcCCCChH
Q 016973           82 KL---EEYETAKVALEKGASLAPGDSR  105 (379)
Q Consensus        82 ~l---g~y~~A~~~~~~a~~l~p~~~~  105 (379)
                      .+   |++++|+..|+++++.+|.+..
T Consensus       137 ~~~~~g~~~~A~~~~~~al~~~p~~~~  163 (568)
T 2vsy_A          137 RLCDWRALDVLSAQVRAAVAQGVGAVE  163 (568)
T ss_dssp             HTTCCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred             HhhccccHHHHHHHHHHHHhcCCcccC
Confidence            99   9999999999999999998644

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.16  E-value=1.8e-10  Score=107.34  Aligned_cols=105  Identities=17%  Similarity=0.066  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---
Q 016973            2 ATDLEKKAKEAFID-DYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSMSK---   71 (379)
Q Consensus         2 A~~l~~~g~~~~~~-g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~---   71 (379)
                      +..+...|.++... |++++|+.+|++++.+.|..      ..++.++|.+|..+|+|++|+..|.+++.+.|.+..   
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  196 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW  196 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence            34678899999996 99999999999999997754      567899999999999999999999999999987543   


Q ss_pred             ----HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHH
Q 016973           72 ----AYWRKATACMKLEEYETAKVALEKGASLAPGDSRF  106 (379)
Q Consensus        72 ----a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~  106 (379)
                          +++++|.++..+|++++|+.+|++++.++|+....
T Consensus       197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  235 (292)
T 1qqe_A          197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (292)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence                68999999999999999999999999999986653

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.16  E-value=2.6e-10  Score=88.81  Aligned_cols=74  Identities=19%  Similarity=0.232  Sum_probs=67.9

Q ss_pred             hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCh
Q 016973           31 ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (379)
Q Consensus        31 ~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~  104 (379)
                      .+|+++.+++.+|.+|+.+|+|++|+..|.+++.++|.++.+|+.+|.+|..+|++++|+.+|++++++.|...
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~   75 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG   75 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999987543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.15  E-value=8e-10  Score=108.64  Aligned_cols=119  Identities=17%  Similarity=0.116  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI---------SPNSAELFADRAQASIKLQNFTEAVADANRAIELE------   66 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~---------~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~------   66 (379)
                      +..+...|.+++..|+|++|++.|++|+++         +|.....|.++|.+|+.+|++++|+.++.+++.+.      
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            345667899999999999999999999987         67778899999999999999999999999999884      


Q ss_pred             --CCCHHHHHHHHHHHHhc--cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           67 --PSMSKAYWRKATACMKL--EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        67 --p~~~~a~~~la~~~~~l--g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                        +..+.++..+|.++..+  ++|++|+.+|+++++++|+++.+...+..+...++..
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~  188 (472)
T 4g1t_A          131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNW  188 (472)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHS
T ss_pred             cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Confidence              35688999999888765  4799999999999999999999888888777666554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.15  E-value=1.4e-10  Score=104.84  Aligned_cols=119  Identities=21%  Similarity=0.218  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL--------   65 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~--------~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l--------   65 (379)
                      +..+...|..++..|+|++|+.+|.+++..        +|....++.++|.+|..+|++++|+..+.+++.+        
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  122 (283)
T 3edt_B           43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF  122 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence            356788999999999999999999999988        3555788999999999999999999999999998        


Q ss_pred             CCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHHHhh
Q 016973           66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASL--------APGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        66 ~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l--------~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +|....+++.+|.+|+.+|++++|+.+|++++.+        .|....+...++.+...+++.
T Consensus       123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  185 (283)
T 3edt_B          123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY  185 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence            4677899999999999999999999999999998        555555666666666655553

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.14  E-value=5e-10  Score=87.32  Aligned_cols=86  Identities=21%  Similarity=0.242  Sum_probs=78.6

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC------hHHHH
Q 016973           35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD------SRFTN  108 (379)
Q Consensus        35 ~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~------~~~~~  108 (379)
                      ++..++.+|.+++.+|+|++|+..|.+++.++|.++.+++.+|.+|+.+|+|++|+.+|+++++++|++      ..+..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            357889999999999999999999999999999999999999999999999999999999999999998      66677


Q ss_pred             HHHHHHHHHHhh
Q 016973          109 LIKECEERIAEE  120 (379)
Q Consensus       109 ~l~~~~~~l~~~  120 (379)
                      .++.+...++..
T Consensus        83 ~~~~~~~~~~~~   94 (111)
T 2l6j_A           83 RLELAQGAVGSV   94 (111)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhH
Confidence            777777777754

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.13  E-value=2.8e-10  Score=91.64  Aligned_cols=87  Identities=18%  Similarity=0.135  Sum_probs=80.9

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973           34 NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (379)
Q Consensus        34 ~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (379)
                      ..+..+..+|.+++..|+|++|+..|.+++.++|.++.+++.+|.+|+.+|+|++|+.+|+++++++|++......++.+
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999988888888


Q ss_pred             HHHHHhh
Q 016973          114 EERIAEE  120 (379)
Q Consensus       114 ~~~l~~~  120 (379)
                      ...+++.
T Consensus        82 ~~~~~~~   88 (126)
T 3upv_A           82 QIAVKEY   88 (126)
T ss_dssp             HHHTTCH
T ss_pred             HHHHhCH
Confidence            7776654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.13  E-value=1.8e-10  Score=93.88  Aligned_cols=79  Identities=24%  Similarity=0.248  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 016973           36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (379)
Q Consensus        36 ~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (379)
                      +.++.++|.++++.|+|++|+.+|.+|+.++|.++.+|+++|.+|+.+|+|++|+.+|+++++++|++......+..+.
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            5678899999999999999999999999999999999999999999999999999999999999987764333333333

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.13  E-value=4.7e-10  Score=84.28  Aligned_cols=84  Identities=24%  Similarity=0.384  Sum_probs=78.0

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973           34 NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (379)
Q Consensus        34 ~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (379)
                      .+..+++.+|.+++..|++++|+..|.+++.++|.+..+++.+|.+++.+|++++|+.+|++++.++|++......++.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999988888777


Q ss_pred             HHHH
Q 016973          114 EERI  117 (379)
Q Consensus       114 ~~~l  117 (379)
                      ...+
T Consensus        87 ~~~~   90 (91)
T 1na3_A           87 KQKQ   90 (91)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.11  E-value=9.5e-10  Score=111.33  Aligned_cols=116  Identities=15%  Similarity=0.106  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCC-HHHHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL------EPSM-SKAYWRK   76 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l------~p~~-~~a~~~l   76 (379)
                      .+...|..+...|++++|+.+|++++..+|.++.++..+|.+|.+.|++++|+..|.+++.+      +|.. ..+++.+
T Consensus       443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l  522 (597)
T 2xpi_A          443 PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL  522 (597)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence            45566667777777777777777777777777777777777777777777777777777666      4443 5667777


Q ss_pred             HHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        77 a~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      |.+|..+|++++|+..|+++++++|++......+..+...+++
T Consensus       523 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  565 (597)
T 2xpi_A          523 GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI  565 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence            7777777777777777777777777666666666655554443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.07  E-value=1.8e-09  Score=109.30  Aligned_cols=117  Identities=13%  Similarity=0.034  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..+...|..++..|++++|+.+|++++..+|.+..++..++.+|.+.|++++|+..|++++.+.|.+..+++.+|.+|..
T Consensus       374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  453 (597)
T 2xpi_A          374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ  453 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            35667788889999999999999999998888888889999999999999999999999999988888899999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      .|++++|+..|+++++++|.+......+..+....+.
T Consensus       454 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  490 (597)
T 2xpi_A          454 LGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD  490 (597)
T ss_dssp             HTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence            9999999999999999988888777766666555444

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.07  E-value=1.2e-09  Score=86.86  Aligned_cols=84  Identities=24%  Similarity=0.173  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..++..|.+++..|++++|+.+|.+++..+|.+..+++.+|.++..+|++++|+..+.+++.++|.+..+++.+|.++..
T Consensus        47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  126 (131)
T 2vyi_A           47 VYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK  126 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCH
Q 016973           83 LEEY   86 (379)
Q Consensus        83 lg~y   86 (379)
                      +|++
T Consensus       127 ~~~~  130 (131)
T 2vyi_A          127 LREA  130 (131)
T ss_dssp             HTTC
T ss_pred             HhcC
Confidence            9876

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.07  E-value=1.5e-09  Score=87.75  Aligned_cols=83  Identities=18%  Similarity=0.160  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973           38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (379)
Q Consensus        38 ~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l  117 (379)
                      .++.+|.+++..|++++|+..|.+++.++|.++.+|+.+|.++..+|++++|+.+|+++++++|++..+...++.+...+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            46889999999999999999999999999999999999999999999999999999999999999999998888888877


Q ss_pred             Hhh
Q 016973          118 AEE  120 (379)
Q Consensus       118 ~~~  120 (379)
                      ++.
T Consensus        99 g~~  101 (121)
T 1hxi_A           99 HNA  101 (121)
T ss_dssp             HHH
T ss_pred             CCH
Confidence            775

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.07  E-value=8.8e-10  Score=108.88  Aligned_cols=113  Identities=22%  Similarity=0.183  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---ccCHHHHHHHHHHHHHhCCCCHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE------LFADRAQASIK---LQNFTEAVADANRAIELEPSMSKAY   73 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~------~~~~ra~~~~~---lg~~~eAl~~~~~Al~l~p~~~~a~   73 (379)
                      ..+...|..++..|++++|+.+|.+++..+|.+..      +++.+|.++..   +|++++|+..+.+++.++|.+..++
T Consensus       373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  452 (514)
T 2gw1_A          373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAK  452 (514)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHH
Confidence            34667778888888888888888888887777643      77888888888   8888888888888888888888888


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 016973           74 WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE  115 (379)
Q Consensus        74 ~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  115 (379)
                      +.+|.+|..+|++++|+..|+++++++|++......+..+..
T Consensus       453 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  494 (514)
T 2gw1_A          453 IGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEA  494 (514)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            888888888888888888888888888887776665544443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.06  E-value=8.6e-10  Score=96.22  Aligned_cols=95  Identities=16%  Similarity=0.068  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..+...|.+++..|+|++|+.+|++++.++|.+..+++++|.+|+.+|++++|+.+|.+++.++|.+..++..++.++..
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  168 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  168 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHH-HHHHHHH
Q 016973           83 LEEYETAK-VALEKGA   97 (379)
Q Consensus        83 lg~y~~A~-~~~~~a~   97 (379)
                      ++++.++. ..|...+
T Consensus       169 ~~~~~~~~~~~~~~~f  184 (198)
T 2fbn_A          169 LKEARKKDKLTFGGMF  184 (198)
T ss_dssp             HHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            99998887 4444443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.06  E-value=8.1e-10  Score=106.47  Aligned_cols=118  Identities=10%  Similarity=0.147  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA----ELFADRAQASIKLQNFTEAVADANRAIEL------EPSMSK   71 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~----~~~~~ra~~~~~lg~~~eAl~~~~~Al~l------~p~~~~   71 (379)
                      +..++..|..++..|+|++|+.+|++++...|.+.    .+++.+|.+|+.+|++++|+..+.+++.+      .+....
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            34678899999999999999999999999999986    58999999999999999999999999998      567789


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhc------CCCChHHHHHHHHHHHHHHh
Q 016973           72 AYWRKATACMKLEEYETAKVALEKGASL------APGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        72 a~~~la~~~~~lg~y~~A~~~~~~a~~l------~p~~~~~~~~l~~~~~~l~~  119 (379)
                      +++.+|.+|+.+|++++|+.+|++++.+      .+........++.+...++.
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            9999999999999999999999999998      34444466666667666666

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.06  E-value=6.4e-10  Score=110.74  Aligned_cols=91  Identities=14%  Similarity=0.149  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +..++++|.+++..|+|++|+.+|+++|.++|+++.+|+++|.||+.+|+|++|+.+|.+|+.++|++..++..++.++.
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  396 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK  396 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHH
Q 016973           82 KLEEYETAKVA   92 (379)
Q Consensus        82 ~lg~y~~A~~~   92 (379)
                      .++++++|...
T Consensus       397 ~~~~~~~a~~~  407 (457)
T 1kt0_A          397 KAKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988753

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.06  E-value=8.2e-10  Score=93.34  Aligned_cols=89  Identities=13%  Similarity=0.142  Sum_probs=81.7

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 016973           32 SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK  111 (379)
Q Consensus        32 ~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~  111 (379)
                      ++.++..++.+|.+++..|+|++|+..|.+++.++|.++.+++.+|.+|+.+|+|++|+.+|+++++++|++..+...++
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34557889999999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHhh
Q 016973          112 ECEERIAEE  120 (379)
Q Consensus       112 ~~~~~l~~~  120 (379)
                      .+...+++.
T Consensus        87 ~~~~~~g~~   95 (164)
T 3sz7_A           87 LARFDMADY   95 (164)
T ss_dssp             HHHHHTTCH
T ss_pred             HHHHHccCH
Confidence            877765553

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.06  E-value=1.6e-09  Score=87.82  Aligned_cols=91  Identities=18%  Similarity=0.245  Sum_probs=83.0

Q ss_pred             HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHH
Q 016973           30 EISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL  109 (379)
Q Consensus        30 ~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~  109 (379)
                      ..++.++..++.+|.+++..|+|++|+..|.+++.++|.++.+++.+|.+++.+|+|++|+.+|+++++++|++..+...
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHhh
Q 016973          110 IKECEERIAEE  120 (379)
Q Consensus       110 l~~~~~~l~~~  120 (379)
                      ++.+...++..
T Consensus        83 l~~~~~~~~~~   93 (137)
T 3q49_B           83 LGQCQLEMESY   93 (137)
T ss_dssp             HHHHHHHTTCH
T ss_pred             HHHHHHHHhhH
Confidence            88887766554

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.05  E-value=8.7e-10  Score=92.98  Aligned_cols=86  Identities=13%  Similarity=0.051  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS-KAYWRKATACM   81 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~-~a~~~la~~~~   81 (379)
                      ..+.++|.+++..|+|++|+..|+++|.++|.++.+|+++|.+|+.+|+|++|+.+|.+++.++|.+. .+...++.+..
T Consensus        64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~  143 (162)
T 3rkv_A           64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE  143 (162)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999998 66777887777


Q ss_pred             hccCHHH
Q 016973           82 KLEEYET   88 (379)
Q Consensus        82 ~lg~y~~   88 (379)
                      .++++.+
T Consensus       144 ~~~~~~~  150 (162)
T 3rkv_A          144 RRAEKKA  150 (162)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHH
Confidence            6665543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.04  E-value=1.4e-09  Score=101.80  Aligned_cols=114  Identities=10%  Similarity=-0.013  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE-LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~-~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      ..++..|..+...|++++|+..|+++|..+|.++. +|.++|.++.++|++++|+..|.+|+.++|....+|+..+.+.+
T Consensus       100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  179 (308)
T 2ond_A          100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY  179 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            35677788888888888888888888888888776 78888888888888888888888888888877777776666544


Q ss_pred             h-ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973           82 K-LEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (379)
Q Consensus        82 ~-lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (379)
                      . +|++++|+.+|+++++++|++..++..+..+...
T Consensus       180 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  215 (308)
T 2ond_A          180 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH  215 (308)
T ss_dssp             HTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            3 6888888888888888888877766555555443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.04  E-value=6.1e-10  Score=100.60  Aligned_cols=98  Identities=21%  Similarity=0.199  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL--------   65 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~--------~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l--------   65 (379)
                      +..+...|.+++..|++++|+.+|.+++..        +|....++.++|.+|..+|++++|+..+.+++.+        
T Consensus        85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  164 (283)
T 3edt_B           85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD  164 (283)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            346788999999999999999999999998        4666889999999999999999999999999999        


Q ss_pred             CCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973           66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASL   99 (379)
Q Consensus        66 ~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l   99 (379)
                      .|....+++.+|.+|+.+|++++|+.+|++++.+
T Consensus       165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            7777899999999999999999999999999987

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.04  E-value=3.1e-09  Score=108.78  Aligned_cols=117  Identities=8%  Similarity=-0.008  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCC
Q 016973            2 ATDLEKKAKEAFIDDY----------FELAYDLYSQAIEISPNSAELFADRAQASIKLQ--NFTEAVADANRAIELEPSM   69 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~----------y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg--~~~eAl~~~~~Al~l~p~~   69 (379)
                      ...|..+|.++...|+          |++|+.+|+++|..+|.++.+|+.|+.++.+++  ++++|+.++.++++++|.+
T Consensus        63 ~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N  142 (567)
T 1dce_A           63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN  142 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccc
Confidence            3578889999999888          999999999999999999999999999999999  7799999999999999999


Q ss_pred             HHHHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 016973           70 SKAYWRKATACMKLE-EYETAKVALEKGASLAPGDSRFTNLIKECEERIA  118 (379)
Q Consensus        70 ~~a~~~la~~~~~lg-~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~  118 (379)
                      ..||..++.++..+| .++++++++.++++.+|++..++..+..+...+.
T Consensus       143 ~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~  192 (567)
T 1dce_A          143 FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH  192 (567)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred             ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhc
Confidence            999999999999999 9999999999999999999999999988876653

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.04  E-value=1.6e-09  Score=99.92  Aligned_cols=117  Identities=9%  Similarity=0.148  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIEL------EPSMSKA   72 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~----~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l------~p~~~~a   72 (379)
                      ..++..|..++..|+|++|+.+|++++...|.+    ..++..+|.++..+|++++|+..+.+++.+      .+....+
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   85 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   85 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            467889999999999999999999999999998    468889999999999999999999999988      4456789


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcCCCChH------HHHHHHHHHHHHHh
Q 016973           73 YWRKATACMKLEEYETAKVALEKGASLAPGDSR------FTNLIKECEERIAE  119 (379)
Q Consensus        73 ~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~------~~~~l~~~~~~l~~  119 (379)
                      ++.+|.+++.+|++++|+..|++++.+.+....      ....++.+...++.
T Consensus        86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence            999999999999999999999999998764432      44455555555555

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.04  E-value=1.9e-10  Score=109.88  Aligned_cols=102  Identities=11%  Similarity=0.001  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-Hh
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC-MK   82 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~-~~   82 (379)
                      .++++|.+++..|+|++|+.+|+++|.++|++..+|+++|.+|+.+|+|++|+.+|.+++.++|.+..++..++.+. ..
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~  311 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE  311 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999984 55


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChH
Q 016973           83 LEEYETAKVALEKGASLAPGDSR  105 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~  105 (379)
                      .+.++.+...|.+++.+.|+++.
T Consensus       312 ~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          312 KALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             -----------------------
T ss_pred             HHHHHHHHHHHHHhhCCCCCCCC
Confidence            67788899999999999998764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.03  E-value=3.4e-10  Score=113.46  Aligned_cols=102  Identities=17%  Similarity=0.225  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA--   79 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~--   79 (379)
                      +..+...|.+++..|+|++|+..|+++++++|.++.+++++|.+|..+|++++|+..|.+|++++|.+..++..++.+  
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~  119 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK  119 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999999999999999999999999999999998  


Q ss_pred             HHhccCHHHHHHHHH-----------HHHhcCCCC
Q 016973           80 CMKLEEYETAKVALE-----------KGASLAPGD  103 (379)
Q Consensus        80 ~~~lg~y~~A~~~~~-----------~a~~l~p~~  103 (379)
                      +..+|+|++|+..++           +++.++|+.
T Consensus       120 ~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          120 IVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            899999999999999           788777653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.03  E-value=1.7e-09  Score=86.61  Aligned_cols=83  Identities=18%  Similarity=0.159  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..++..|.+++..|++++|+.+|.+++..+|.+..+++++|.++..+|++++|+..|.+++.++|.+..+++.++.+++.
T Consensus        51 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A           51 KLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA  130 (133)
T ss_dssp             HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccC
Q 016973           83 LEE   85 (379)
Q Consensus        83 lg~   85 (379)
                      +|+
T Consensus       131 ~~~  133 (133)
T 2lni_A          131 QYN  133 (133)
T ss_dssp             HTC
T ss_pred             hcC
Confidence            774

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.02  E-value=3.8e-09  Score=98.91  Aligned_cols=106  Identities=13%  Similarity=0.092  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 016973            3 TDLEKKAKEAF-------IDDYF-------ELAYDLYSQAIE-ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP   67 (379)
Q Consensus         3 ~~l~~~g~~~~-------~~g~y-------~~Al~~y~~al~-~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p   67 (379)
                      +.|+..|..+.       ..|++       ++|+..|++|+. ++|++..+|..+|.++..+|++++|+..|++++.++|
T Consensus        51 ~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p  130 (308)
T 2ond_A           51 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED  130 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS
T ss_pred             HHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc
Confidence            45667777665       35885       999999999999 7999999999999999999999999999999999999


Q ss_pred             CCHH-HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHH
Q 016973           68 SMSK-AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN  108 (379)
Q Consensus        68 ~~~~-a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~  108 (379)
                      .++. +|+.+|.++.++|++++|+..|+++++++|.+..+..
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  172 (308)
T 2ond_A          131 IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV  172 (308)
T ss_dssp             SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHH
T ss_pred             cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            9887 9999999999999999999999999999998766543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.01  E-value=1.7e-09  Score=103.21  Aligned_cols=118  Identities=10%  Similarity=0.157  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCCHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELE------PSMSK   71 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~----~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~------p~~~~   71 (379)
                      +..++..|..++..|+|++|+.+|++++...|.+    ..++..+|.+|+.+|++++|+..+.+++.+.      +....
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   88 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   88 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            4578899999999999999999999999999998    4688999999999999999999999999883      45678


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCh------HHHHHHHHHHHHHHh
Q 016973           72 AYWRKATACMKLEEYETAKVALEKGASLAPGDS------RFTNLIKECEERIAE  119 (379)
Q Consensus        72 a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~------~~~~~l~~~~~~l~~  119 (379)
                      +++.+|.+|..+|++++|+.+|++++.+.+...      .....++.+...++.
T Consensus        89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  142 (406)
T 3sf4_A           89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  142 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999876432      255556666666665

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.01  E-value=1.1e-08  Score=93.28  Aligned_cols=109  Identities=11%  Similarity=0.051  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYWRKA   77 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~----lg~~~eAl~~~~~Al~l~p~~~~a~~~la   77 (379)
                      +..++..|..++..|++++|+.+|.+++.  +.++.+++++|.+|..    .+++++|+..|.+++.++  ++.+++.+|
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg   81 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG   81 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence            46788999999999999999999999998  7788999999999999    999999999999999986  799999999


Q ss_pred             HHHHh----ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973           78 TACMK----LEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (379)
Q Consensus        78 ~~~~~----lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (379)
                      .+|..    .+++++|+.+|++++.++  +......++.+...
T Consensus        82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~  122 (273)
T 1ouv_A           82 NLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHD  122 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             HHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHc
Confidence            99999    999999999999999884  66666666666543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.01  E-value=6.5e-10  Score=86.11  Aligned_cols=88  Identities=20%  Similarity=0.214  Sum_probs=81.8

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC--ChHHHHH
Q 016973           32 SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG--DSRFTNL  109 (379)
Q Consensus        32 ~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~--~~~~~~~  109 (379)
                      +|++..+++.+|.+++..|++++|+..+.+++.++|.+..+++.+|.+++.+|++++|+.+|+++++++|.  +..+...
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            67888899999999999999999999999999999999999999999999999999999999999999999  8888888


Q ss_pred             HHHHHHHH-Hh
Q 016973          110 IKECEERI-AE  119 (379)
Q Consensus       110 l~~~~~~l-~~  119 (379)
                      ++.+...+ ++
T Consensus        82 l~~~~~~~~~~   92 (112)
T 2kck_A           82 KADALRYIEGK   92 (112)
T ss_dssp             HHHHHTTCSSC
T ss_pred             HHHHHHHHhCC
Confidence            88777666 44

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.00  E-value=5.4e-09  Score=98.66  Aligned_cols=117  Identities=8%  Similarity=0.055  Sum_probs=108.1

Q ss_pred             HHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH--HHHHHHHHHHHhCCCCHHHH
Q 016973            3 TDLEKKAKEA----FID---DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFT--EAVADANRAIELEPSMSKAY   73 (379)
Q Consensus         3 ~~l~~~g~~~----~~~---g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~--eAl~~~~~Al~l~p~~~~a~   73 (379)
                      ..+..++.++    ...   +++++++.+++++|..+|.+..+|.+|+.++.++|.++  +++..+.+++.++|.+..||
T Consensus       104 ~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW  183 (306)
T 3dra_A          104 QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAW  183 (306)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHH
Confidence            3566777777    555   79999999999999999999999999999999999999  99999999999999999999


Q ss_pred             HHHHHHHHhccC------HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           74 WRKATACMKLEE------YETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        74 ~~la~~~~~lg~------y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      ..++.++..+++      +++++.++.+++.++|+|..++..+..+...++.
T Consensus       184 ~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~  235 (306)
T 3dra_A          184 SHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR  235 (306)
T ss_dssp             HHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence            999999999998      9999999999999999999999999888776654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.00  E-value=2.5e-09  Score=85.28  Aligned_cols=76  Identities=13%  Similarity=-0.020  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA   77 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la   77 (379)
                      +..++..|.+++..|+|++|+..|.+++..+|+++.+++++|.|+..+|++++|+..+.+++.+.|.++.......
T Consensus        27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  102 (117)
T 3k9i_A           27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ  102 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            3567899999999999999999999999999999999999999999999999999999999999999987654433

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.00  E-value=4.2e-09  Score=88.49  Aligned_cols=104  Identities=10%  Similarity=0.068  Sum_probs=96.0

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHhccCHHHHHH
Q 016973           17 YFELAYDLYSQAIEISPNSAELFADRAQASIKLQ---NFTEAVADANRAIELE-P-SMSKAYWRKATACMKLEEYETAKV   91 (379)
Q Consensus        17 ~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg---~~~eAl~~~~~Al~l~-p-~~~~a~~~la~~~~~lg~y~~A~~   91 (379)
                      ....+.+.|.+.+..++.+....+++|.|+.+.+   ++++++..++.++..+ | ...+++|.+|+.|+++|+|++|+.
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            4567788899999999999999999999999988   6779999999999998 7 678999999999999999999999


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           92 ALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        92 ~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +++++++++|++.++...+..+..++...
T Consensus        93 y~~~lL~ieP~n~QA~~Lk~~ie~~~~kd  121 (152)
T 1pc2_A           93 YVRGLLQTEPQNNQAKELERLIDKAMKKD  121 (152)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999888774

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.00  E-value=1.4e-09  Score=89.41  Aligned_cols=100  Identities=16%  Similarity=0.159  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM------   69 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~------   69 (379)
                      +..+...|..++..|+|++|+..|.+++...+..      ..++..+|.++..+|++++|+..+.+++.+.+..      
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            4567889999999999999999999999985432      2578999999999999999999999999886542      


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 016973           70 SKAYWRKATACMKLEEYETAKVALEKGASLAP  101 (379)
Q Consensus        70 ~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p  101 (379)
                      ..+++.+|.++..+|++++|+.+|++++.+.+
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  120 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  120 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999998743

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.98  E-value=4.9e-09  Score=98.92  Aligned_cols=115  Identities=4%  Similarity=-0.198  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---cCHHHHHHHHHHHHHhCCCCHHHH
Q 016973            3 TDLEKKAKEAFIDD--YFELAYDLYSQAIEISPNSAELFADRAQAS----IKL---QNFTEAVADANRAIELEPSMSKAY   73 (379)
Q Consensus         3 ~~l~~~g~~~~~~g--~y~~Al~~y~~al~~~p~~~~~~~~ra~~~----~~l---g~~~eAl~~~~~Al~l~p~~~~a~   73 (379)
                      ..+..+|.++...+  ++++|+.+++++|..+|.+..+|..|+.++    ..+   +++++++..+.+++.++|.+..+|
T Consensus        68 taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW  147 (306)
T 3dra_A           68 TIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVW  147 (306)
T ss_dssp             HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            46777888888888  888888888888888888888888888888    666   678888888888888888888888


Q ss_pred             HHHHHHHHhccCHH--HHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973           74 WRKATACMKLEEYE--TAKVALEKGASLAPGDSRFTNLIKECEERI  117 (379)
Q Consensus        74 ~~la~~~~~lg~y~--~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l  117 (379)
                      +.++.++..+|.++  +++.++.++++.+|.|..++..+..+...+
T Consensus       148 ~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l  193 (306)
T 3dra_A          148 SYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSK  193 (306)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            88888888888887  888888888888888888777766664443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.98  E-value=1.5e-09  Score=99.69  Aligned_cols=118  Identities=21%  Similarity=0.244  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIELE--------   66 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~--------~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~--------   66 (379)
                      ..+...|..++..|++++|+.+|.+++..        .+....++..+|.+|..+|++++|+..+.+++.+.        
T Consensus        70 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  149 (311)
T 3nf1_A           70 TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH  149 (311)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence            46788999999999999999999999998        35557889999999999999999999999999884        


Q ss_pred             CCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHHHhh
Q 016973           67 PSMSKAYWRKATACMKLEEYETAKVALEKGASL--------APGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        67 p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l--------~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +....+++.+|.++..+|++++|+.+|++++.+        .|........++.+...+++.
T Consensus       150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  211 (311)
T 3nf1_A          150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKF  211 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCH
Confidence            567789999999999999999999999999998        454455566666666555543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.97  E-value=1.6e-09  Score=104.21  Aligned_cols=117  Identities=15%  Similarity=0.164  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-------AELFADRAQASIKLQNFTEAVADANRAIELEPSM-----   69 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~-------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~-----   69 (379)
                      +..+...|..++..|+++.|+..|.+|+.+.+..       ..++.++|.+|..+|++++|+..|.+|+.+.+..     
T Consensus       143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  222 (383)
T 3ulq_A          143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL  222 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence            3456677777777777777777777777763322       3467777777777777777777777777664422     


Q ss_pred             -HHHHHHHHHHHHhccCHHHHHHHHHHHHhc-----C-CCChHHHHHHHHHHHHHH
Q 016973           70 -SKAYWRKATACMKLEEYETAKVALEKGASL-----A-PGDSRFTNLIKECEERIA  118 (379)
Q Consensus        70 -~~a~~~la~~~~~lg~y~~A~~~~~~a~~l-----~-p~~~~~~~~l~~~~~~l~  118 (379)
                       ..+++++|.+|..+|+|++|+.+|++++.+     + |....+...++.+...++
T Consensus       223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g  278 (383)
T 3ulq_A          223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLG  278 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCC
Confidence             246777777777777777777777777773     3 444444455555544433

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.97  E-value=1.3e-09  Score=101.18  Aligned_cols=98  Identities=19%  Similarity=0.217  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI---S----PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM------   69 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~---~----p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~------   69 (379)
                      ..+...|.+++..|+|++|+.+|.+++..   .    +....+++++|.+|.++|+|++|+..+.+|+.+.+..      
T Consensus       156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~  235 (293)
T 3u3w_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence            45788999999999999999999999963   1    1225688999999999999999999999999987533      


Q ss_pred             HHHHHHHHHHHHhcc-CHHHHHHHHHHHHhcC
Q 016973           70 SKAYWRKATACMKLE-EYETAKVALEKGASLA  100 (379)
Q Consensus        70 ~~a~~~la~~~~~lg-~y~~A~~~~~~a~~l~  100 (379)
                      +.+++++|.+|..+| .+++|+.+|++|+.+.
T Consensus       236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            889999999999999 5799999999998763

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.96  E-value=2.1e-09  Score=91.30  Aligned_cols=85  Identities=18%  Similarity=0.159  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHhccCHHHHHHHHHHHHhc----
Q 016973           36 AELFADRAQASIKLQNFTEAVADANRAIELEPS-------MSK-----AYWRKATACMKLEEYETAKVALEKGASL----   99 (379)
Q Consensus        36 ~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~-------~~~-----a~~~la~~~~~lg~y~~A~~~~~~a~~l----   99 (379)
                      ...+.++|.+++++|+|++|+..|++|++++|.       +..     +|+++|.++..+|+|++|+.+|.+++++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            466889999999999999999999999999998       444     9999999999999999999999999999    


Q ss_pred             ---CCCChHHH----HHHHHHHHHHHhh
Q 016973          100 ---APGDSRFT----NLIKECEERIAEE  120 (379)
Q Consensus       100 ---~p~~~~~~----~~l~~~~~~l~~~  120 (379)
                         +|++..++    ..++.+...++..
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~  118 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRG  118 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCH
Confidence               99998888    7777776666554

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.96  E-value=2.4e-09  Score=100.37  Aligned_cols=101  Identities=24%  Similarity=0.258  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM------   69 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~------   69 (379)
                      +..+...|.++.. |+|++|+.+|++++.+.+..      ..++.++|.+|..+|+|++|+..|.+++.+.+.+      
T Consensus       116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  194 (307)
T 2ifu_A          116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC  194 (307)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence            3466788888888 99999999999999986543      5778899999999999999999999999886543      


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCh
Q 016973           70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (379)
Q Consensus        70 ~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~  104 (379)
                      ..+++.+|.+++.+|++++|+.+|++++ ++|...
T Consensus       195 ~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          195 YKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence            3578889999999999999999999999 988654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.96  E-value=4.1e-09  Score=80.89  Aligned_cols=69  Identities=17%  Similarity=0.260  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHH
Q 016973           39 FADRAQASIKLQNFTEAVADANRAIELEPSMSK-AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT  107 (379)
Q Consensus        39 ~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~-a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~  107 (379)
                      .+.+|.+++..|++++|+..|.+++.++|.+.. +++.+|.+|+.+|++++|+.+|+++++++|++..+.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            367899999999999999999999999999999 999999999999999999999999999999999876

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.96  E-value=4.2e-09  Score=102.03  Aligned_cols=90  Identities=20%  Similarity=0.194  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..+.++|.+++..|+|++|+.+|+++|.++|.++.+++++|.+|+.+|++++|+.+|.+|++++|.+..++..++.++..
T Consensus       274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~  353 (370)
T 1ihg_A          274 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK  353 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHH
Q 016973           83 LEEYETAKVA   92 (379)
Q Consensus        83 lg~y~~A~~~   92 (379)
                      +++++++...
T Consensus       354 ~~~~~~a~k~  363 (370)
T 1ihg_A          354 IKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            9999988653

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.96  E-value=4e-09  Score=81.99  Aligned_cols=83  Identities=18%  Similarity=0.185  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATA   79 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~--~~~a~~~la~~   79 (379)
                      +..++..|.+++..|+|++|+..|+++++++|+++.+++++|.||..+|++++|+..|.+++.+.+.  +..+...+...
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~   86 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDA   86 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHH
Confidence            4578999999999999999999999999999999999999999999999999999999999999764  44444455555


Q ss_pred             HHhcc
Q 016973           80 CMKLE   84 (379)
Q Consensus        80 ~~~lg   84 (379)
                      +...+
T Consensus        87 l~~~~   91 (100)
T 3ma5_A           87 KLKAE   91 (100)
T ss_dssp             HHHHH
T ss_pred             HHHcc
Confidence            44443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.94  E-value=4e-09  Score=97.92  Aligned_cols=99  Identities=20%  Similarity=0.235  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAI---EISPNSA----ELFADRAQASIKLQNFTEAVADANRAIELEPS------   68 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al---~~~p~~~----~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~------   68 (379)
                      +..+...|..++..|+|++|+.+|++++   ...+.+.    .+++++|.+|..+|+|++|+..+.+++.+.+.      
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~  234 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence            3467788999999999999999999998   4455542    58888999999999999999999999887542      


Q ss_pred             CHHHHHHHHHHHHhccCHHHH-HHHHHHHHhcC
Q 016973           69 MSKAYWRKATACMKLEEYETA-KVALEKGASLA  100 (379)
Q Consensus        69 ~~~a~~~la~~~~~lg~y~~A-~~~~~~a~~l~  100 (379)
                      .+.+++++|.+|..+|++++| ..+|++++.+.
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            277889999999999999999 77788888764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.93  E-value=2.6e-09  Score=98.15  Aligned_cols=97  Identities=20%  Similarity=0.208  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------C
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEIS--------PNSAELFADRAQASIKLQNFTEAVADANRAIEL--------E   66 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~--------p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l--------~   66 (379)
                      ..+...|..++..|++++|+.+|.+++.+.        +....++..+|.++..+|++++|+..+.+++.+        .
T Consensus       112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  191 (311)
T 3nf1_A          112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD  191 (311)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            467889999999999999999999999984        555778999999999999999999999999998        6


Q ss_pred             CCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973           67 PSMSKAYWRKATACMKLEEYETAKVALEKGASL   99 (379)
Q Consensus        67 p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l   99 (379)
                      |....+++.+|.+|..+|++++|+.+|++++.+
T Consensus       192 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          192 PNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            777889999999999999999999999999975

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.93  E-value=4.6e-09  Score=86.24  Aligned_cols=100  Identities=15%  Similarity=0.189  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEP------SMS   70 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p------~~~   70 (379)
                      ..+...|..++..|+|++|+..|.+++.+.+..      ..++.++|.++..+|++++|+..+.+++.+.+      ...
T Consensus        50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  129 (164)
T 3ro3_A           50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG  129 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence            467889999999999999999999999985443      56889999999999999999999999998843      236


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 016973           71 KAYWRKATACMKLEEYETAKVALEKGASLAPG  102 (379)
Q Consensus        71 ~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~  102 (379)
                      .+++.+|.+++.+|++++|+.+|++++++...
T Consensus       130 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          130 RACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999887543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.93  E-value=9.7e-09  Score=87.88  Aligned_cols=80  Identities=10%  Similarity=0.002  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhccCHHHHHHHHHHH
Q 016973           19 ELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM--SKAYWRKATACMKLEEYETAKVALEKG   96 (379)
Q Consensus        19 ~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~--~~a~~~la~~~~~lg~y~~A~~~~~~a   96 (379)
                      ..|+..|++++..+|+++.+++.+|.++..+|++++|+..|.+++.++|..  ..+++.+|.++..+|++++|+..|+++
T Consensus        91 ~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a  170 (176)
T 2r5s_A           91 SPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ  170 (176)
T ss_dssp             CHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence            346777778888899999999999999999999999999999999999975  669999999999999999999999988


Q ss_pred             Hh
Q 016973           97 AS   98 (379)
Q Consensus        97 ~~   98 (379)
                      +.
T Consensus       171 l~  172 (176)
T 2r5s_A          171 LY  172 (176)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.92  E-value=1.7e-08  Score=79.27  Aligned_cols=82  Identities=23%  Similarity=0.332  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..++..|..++..|++++|+.+|.+++..+|.+..+++.+|.++..+|++++|+..+.+++.++|.+..+++.+|.++..
T Consensus        44 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             cc
Q 016973           83 LE   84 (379)
Q Consensus        83 lg   84 (379)
                      +|
T Consensus       124 ~g  125 (125)
T 1na0_A          124 QG  125 (125)
T ss_dssp             HC
T ss_pred             cc
Confidence            65

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.92  E-value=2.9e-09  Score=91.97  Aligned_cols=99  Identities=15%  Similarity=0.057  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CC----C
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL---EP----S   68 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~------~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l---~p----~   68 (379)
                      +..+...|..++..|+|++|+.+|.+++.+      .+....++.++|.+|..+|++++|+..+.+++.+   .+    .
T Consensus        26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  105 (203)
T 3gw4_A           26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA  105 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence            356788999999999999999999999994      3444678999999999999999999999999988   33    2


Q ss_pred             CHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 016973           69 MSKAYWRKATACMKLEEYETAKVALEKGASLA  100 (379)
Q Consensus        69 ~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~  100 (379)
                      ...+++.+|.++..+|++++|+.+|++++.+.
T Consensus       106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (203)
T 3gw4_A          106 ASANAYEVATVALHFGDLAGARQEYEKSLVYA  137 (203)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            35678999999999999999999999998764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.91  E-value=3.2e-09  Score=98.50  Aligned_cols=116  Identities=17%  Similarity=0.109  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----H--HHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS-----K--AYW   74 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~-----~--a~~   74 (379)
                      +..+...|.+++..|+|++|+..|++++.++|++..+++++|.+|..+|++++|+.+|.+++.++|++.     .  ..+
T Consensus        38 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~  117 (281)
T 2c2l_A           38 AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL  117 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence            356788999999999999999999999999999999999999999999999999999999999987531     1  111


Q ss_pred             HHH----------------------HHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973           75 RKA----------------------TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (379)
Q Consensus        75 ~la----------------------~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l  117 (379)
                      +++                      ...+..|++++|+..|+++++++|++..+...+..+....
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  182 (281)
T 2c2l_A          118 RIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKH  182 (281)
T ss_dssp             HHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHH
Confidence            111                      1123478999999999999999999877666665554443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.91  E-value=7.8e-09  Score=105.76  Aligned_cols=113  Identities=9%  Similarity=-0.039  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDD--YFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATA   79 (379)
Q Consensus         3 ~~l~~~g~~~~~~g--~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg-~~~eAl~~~~~Al~l~p~~~~a~~~la~~   79 (379)
                      ..|..+|.++...+  +|++|+.+|+++|+.+|.+..+|.+|+.++.++| .++++++++.+++.++|.+..+|+.+|.+
T Consensus       108 ~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~l  187 (567)
T 1dce_A          108 GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCL  187 (567)
T ss_dssp             HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHH
Confidence            47888999999999  7799999999999999999999999999999999 99999999999999999999999999999


Q ss_pred             HHhc--------------cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 016973           80 CMKL--------------EEYETAKVALEKGASLAPGDSRFTNLIKECEE  115 (379)
Q Consensus        80 ~~~l--------------g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  115 (379)
                      +..+              +.+++|++++.+|+.++|++..++..+..+..
T Consensus       188 l~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~  237 (567)
T 1dce_A          188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG  237 (567)
T ss_dssp             HHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred             HHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHh
Confidence            9986              77899999999999999999999988877743

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.91  E-value=1.5e-08  Score=94.07  Aligned_cols=114  Identities=10%  Similarity=0.011  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCC----HH
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIE---LEPSM----SK   71 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~---l~p~~----~~   71 (379)
                      ++..|..+...|+|++|+..|.+++...+..      ..++.++|.+|..+|+|++|+..|.+|+.   ..+..    ..
T Consensus       118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~  197 (293)
T 2qfc_A          118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK  197 (293)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHH
Confidence            4557888888999999999999999875443      56899999999999999999999999994   45553    26


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHHH
Q 016973           72 AYWRKATACMKLEEYETAKVALEKGASLAPGD------SRFTNLIKECEERIA  118 (379)
Q Consensus        72 a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~l~  118 (379)
                      +++++|.+|+.+|+|++|+.+|++++.+.+..      ..+...++.+...++
T Consensus       198 ~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g  250 (293)
T 2qfc_A          198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE  250 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTT
T ss_pred             HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999886421      234444555544443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.90  E-value=3.3e-08  Score=94.13  Aligned_cols=116  Identities=6%  Similarity=-0.029  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCH
Q 016973            3 TDLEKKAKEAFIDDY----------FELAYDLYSQAIEISPNSAELFADRAQASIKLQN--FTEAVADANRAIELEPSMS   70 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~----------y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~--~~eAl~~~~~Al~l~p~~~   70 (379)
                      ..+..++.++...+.          +.+++.+++.+|..+|.++.+|..|+.++..++.  +++++.++.+++.++|.+.
T Consensus        65 taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy  144 (331)
T 3dss_A           65 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF  144 (331)
T ss_dssp             HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCH
Confidence            456777777776665          7999999999999999999999999999999994  9999999999999999999


Q ss_pred             HHHHHHHHHHHhccC-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 016973           71 KAYWRKATACMKLEE-YETAKVALEKGASLAPGDSRFTNLIKECEERIA  118 (379)
Q Consensus        71 ~a~~~la~~~~~lg~-y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~  118 (379)
                      .+|..++.++..+|. +++++.++.+++..+|.|..++..+..+...+.
T Consensus       145 ~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~  193 (331)
T 3dss_A          145 HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH  193 (331)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999 699999999999999999999998888866653

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.90  E-value=2.9e-08  Score=94.45  Aligned_cols=111  Identities=9%  Similarity=-0.034  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDD--YFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSKAYWRKATA   79 (379)
Q Consensus         3 ~~l~~~g~~~~~~g--~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~-~~eAl~~~~~Al~l~p~~~~a~~~la~~   79 (379)
                      ..|..++.++...+  .+++++.+++++|..+|.|..+|.+|+.++..+|. +++++.++.+++.++|.+..+|..++.+
T Consensus       109 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~l  188 (331)
T 3dss_A          109 GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCL  188 (331)
T ss_dssp             HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            46788888898888  49999999999999999999999999999999999 6999999999999999999999999999


Q ss_pred             HHhc--------------cCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973           80 CMKL--------------EEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (379)
Q Consensus        80 ~~~l--------------g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (379)
                      +..+              +.+++++.++.+++.++|+|..++..+..+
T Consensus       189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~l  236 (331)
T 3dss_A          189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL  236 (331)
T ss_dssp             HHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9988              679999999999999999999988765444

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.90  E-value=5e-08  Score=88.90  Aligned_cols=106  Identities=11%  Similarity=0.082  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHH
Q 016973            3 TDLEKKAKEAFI----DDYFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYW   74 (379)
Q Consensus         3 ~~l~~~g~~~~~----~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~----lg~~~eAl~~~~~Al~l~p~~~~a~~   74 (379)
                      ..++..|..++.    .+++++|+.+|.+++..+  ++.+++++|.+|..    .+++++|+..|.+++.++  ++.+++
T Consensus        39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~  114 (273)
T 1ouv_A           39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCA  114 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHH
Confidence            467788899999    999999999999999885  78889999999999    999999999999998884  788999


Q ss_pred             HHHHHHHh----ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 016973           75 RKATACMK----LEEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (379)
Q Consensus        75 ~la~~~~~----lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (379)
                      .+|.+|..    .+++++|+.+|+++++++  +......+..+.
T Consensus       115 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~  156 (273)
T 1ouv_A          115 SLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLY  156 (273)
T ss_dssp             HHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHH
Confidence            99999999    999999999999999876  444444554443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.89  E-value=6.3e-09  Score=99.99  Aligned_cols=100  Identities=17%  Similarity=0.183  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----C-CCC
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIEL-----E-PSM   69 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l-----~-p~~   69 (379)
                      +..+...|.++...|+|++|+..|.+++.+.+..      ..++.++|.+|..+|++++|+..+.+|+.+     + |..
T Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~  263 (383)
T 3ulq_A          184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL  263 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence            3467889999999999999999999999985433      358999999999999999999999999994     5 778


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 016973           70 SKAYWRKATACMKLEEYETAKVALEKGASLAP  101 (379)
Q Consensus        70 ~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p  101 (379)
                      ..+++.+|.+|+.+|++++|+.+|++++.+.+
T Consensus       264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999854

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.89  E-value=2.6e-09  Score=100.12  Aligned_cols=102  Identities=12%  Similarity=0.047  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM------   69 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~------   69 (379)
                      +..+.+.|.++...|+|++|+.+|.+++.+.+..      ..++.++|.+|.. |++++|+.+|.+|+.+.+..      
T Consensus        76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~  154 (307)
T 2ifu_A           76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQA  154 (307)
T ss_dssp             HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHH
Confidence            3467788999999999999999999999984321      4678899999998 99999999999999997643      


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCh
Q 016973           70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (379)
Q Consensus        70 ~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~  104 (379)
                      ..+++++|.+|..+|+|++|+.+|++++.+.+.+.
T Consensus       155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  189 (307)
T 2ifu_A          155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME  189 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence            67899999999999999999999999999876543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.87  E-value=1.9e-08  Score=98.81  Aligned_cols=103  Identities=22%  Similarity=0.117  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-------------------cCHHHHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL-------------------QNFTEAVADANRAI   63 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~l-------------------g~~~eAl~~~~~Al   63 (379)
                      ..+...|..+...|++++|+..|.+++..+|++..++.++|.||...                   +.+++|+..+.+++
T Consensus       248 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  327 (472)
T 4g1t_A          248 DVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD  327 (472)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            45678899999999999999999999999999999999999888643                   34678888999999


Q ss_pred             HhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChH
Q 016973           64 ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR  105 (379)
Q Consensus        64 ~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~  105 (379)
                      .++|.+..+++.+|.+|..+|+|++|+.+|++++.+++++..
T Consensus       328 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~  369 (472)
T 4g1t_A          328 EANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA  369 (472)
T ss_dssp             HHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred             hcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence            999999999999999999999999999999999999887654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.87  E-value=4.2e-09  Score=97.78  Aligned_cols=113  Identities=10%  Similarity=0.004  Sum_probs=92.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHH
Q 016973            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELE-------PSMSKA   72 (379)
Q Consensus         6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~-------p~~~~a   72 (379)
                      ...|..++..++|++|+..|.+++.+....      ..++.++|.+|..+|+|++|+..|.+|+.+.       +....+
T Consensus       119 ~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  198 (293)
T 3u3w_A          119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV  198 (293)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence            357888888999999999999999964432      3478999999999999999999999999642       234568


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHHH
Q 016973           73 YWRKATACMKLEEYETAKVALEKGASLAPGD------SRFTNLIKECEERIA  118 (379)
Q Consensus        73 ~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~l~  118 (379)
                      ++++|.+|+.+|+|++|+.+|++++.+.+..      ..+...++.+...++
T Consensus       199 ~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g  250 (293)
T 3u3w_A          199 RYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE  250 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999986543      345555666665555

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.87  E-value=1e-08  Score=95.25  Aligned_cols=103  Identities=17%  Similarity=0.014  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC-CHHHHHHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS--AELFADRAQASIKLQNFTEAVADANRAIELE--PS-MSKAYWRKAT   78 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~--~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~--p~-~~~a~~~la~   78 (379)
                      ..+..|..+++.++|++|+.+|++++...+..  ..+++++|.++..+|++++|+..|.+++...  |. ...+++++|.
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~gl  216 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAM  216 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHH
Confidence            45778888999999999999998776653221  3578999999999999999999999998544  44 6679999999


Q ss_pred             HHHhccCHHHHHHHHHHHHhcCCCChHHH
Q 016973           79 ACMKLEEYETAKVALEKGASLAPGDSRFT  107 (379)
Q Consensus        79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~  107 (379)
                      ++.++|+.++|...|++++..+|+ ..+.
T Consensus       217 aL~~lGr~deA~~~l~~a~a~~P~-~~~~  244 (282)
T 4f3v_A          217 ARRSQGNESAAVALLEWLQTTHPE-PKVA  244 (282)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCc-HHHH
Confidence            999999999999999999999998 5543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.86  E-value=1.6e-08  Score=97.22  Aligned_cols=101  Identities=15%  Similarity=0.037  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN------SAELFADRAQASIKLQNFTEAVADANRAIE-----LEPSMS   70 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~------~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~-----l~p~~~   70 (379)
                      +..+...|.+++..|+|++|+..|.+++.+.+.      ...++.++|.+|..+|++++|+..+.+|+.     .+|...
T Consensus       182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  261 (378)
T 3q15_A          182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP  261 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence            456788999999999999999999999997331      246889999999999999999999999999     677789


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 016973           71 KAYWRKATACMKLEEYETAKVALEKGASLAPG  102 (379)
Q Consensus        71 ~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~  102 (379)
                      .+++.+|.+|+.+|++++|+.+|++++.+.+.
T Consensus       262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.86  E-value=4.7e-08  Score=93.56  Aligned_cols=109  Identities=8%  Similarity=0.027  Sum_probs=100.6

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-c-CHHH
Q 016973           12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATACMKL-E-EYET   88 (379)
Q Consensus        12 ~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg-~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l-g-~y~~   88 (379)
                      ....+..++|+.+++++|.++|.+..+|..|+.++..++ .+++++..+..++.++|.+..+|+.++.++..+ + ++++
T Consensus        64 ~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~  143 (349)
T 3q7a_A           64 AAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS  143 (349)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred             HHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence            334445579999999999999999999999999999999 599999999999999999999999999999998 8 9999


Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           89 AKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        89 A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      ++.++.+++.++|.+..++..+..+-..++..
T Consensus       144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~  175 (349)
T 3q7a_A          144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTL  175 (349)
T ss_dssp             HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999888887764

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.86  E-value=3.6e-08  Score=76.12  Aligned_cols=76  Identities=16%  Similarity=0.016  Sum_probs=70.2

Q ss_pred             CCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHH
Q 016973           32 SPNSAELFADRAQASIKLQN---FTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT  107 (379)
Q Consensus        32 ~p~~~~~~~~ra~~~~~lg~---~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~  107 (379)
                      +|.++.++..+|.+++..++   .++|...+.+|+.++|++..+++.+|..++..|+|++|+.+|+++++.+|.++...
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~   80 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRV   80 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence            68899999999999987766   79999999999999999999999999999999999999999999999999855433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.86  E-value=2.6e-08  Score=77.42  Aligned_cols=79  Identities=13%  Similarity=0.120  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      ..+...|.+++..|+|++|+..|.+++..+|.+..+++.+|.++..+|++++|+..+.+++.++|.+..+++.++.+..
T Consensus        39 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           39 VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            4678899999999999999999999999999999999999999999999999999999999999999999999987753

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.86  E-value=8.4e-09  Score=98.38  Aligned_cols=118  Identities=13%  Similarity=0.143  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------H
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM------S   70 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~------~   70 (379)
                      ..+...|..++..|++++|+.+|.+++.+.+..      ..++..+|.+|..+|++++|+..+.+++.+.+..      .
T Consensus       228 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  307 (406)
T 3sf4_A          228 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEG  307 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence            367788999999999999999999999886655      6788899999999999999999999999886543      6


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHHHhh
Q 016973           71 KAYWRKATACMKLEEYETAKVALEKGASLAPGD------SRFTNLIKECEERIAEE  120 (379)
Q Consensus        71 ~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~l~~~  120 (379)
                      .+++.+|.+|..+|++++|+.+|++++++.+..      ......++.+...++..
T Consensus       308 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          308 RACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence            788999999999999999999999998885432      23445555555555543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.85  E-value=8.5e-09  Score=87.42  Aligned_cols=69  Identities=20%  Similarity=0.205  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----------CHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYF----------ELAYDLYSQAIEISPNSAELFADRAQASIKLQ-----------NFTEAVADAN   60 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y----------~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg-----------~~~eAl~~~~   60 (379)
                      ++.+++.|.++...+++          ++|+..|++||+++|++..+|+++|.+|..+|           +|++|+.+|.
T Consensus        36 aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~  115 (158)
T 1zu2_A           36 ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQ  115 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHH
Confidence            56788999999998875          59999999999999999999999999999985           8999999999


Q ss_pred             HHHHhCCCCH
Q 016973           61 RAIELEPSMS   70 (379)
Q Consensus        61 ~Al~l~p~~~   70 (379)
                      +|+.++|++.
T Consensus       116 kAl~l~P~~~  125 (158)
T 1zu2_A          116 QAVDEQPDNT  125 (158)
T ss_dssp             HHHHHCTTCH
T ss_pred             HHHHhCCCCH
Confidence            9999999875

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.84  E-value=1.1e-08  Score=98.37  Aligned_cols=119  Identities=13%  Similarity=0.029  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------C
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN-------SAELFADRAQASIKLQNFTEAVADANRAIELEP------S   68 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~-------~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p------~   68 (379)
                      +..+...|..++..|++..|+..|.+|+.+.+.       ...++.++|.+|..+|+|++|+..|.+|+.+.+      .
T Consensus       141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~  220 (378)
T 3q15_A          141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF  220 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            456788899999999999999999999987442       245788899999999999999999999998743      2


Q ss_pred             CHHHHHHHHHHHHhccCHHHHHHHHHHHHh-----cCCCChHHHHHHHHHHHHHHhh
Q 016973           69 MSKAYWRKATACMKLEEYETAKVALEKGAS-----LAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        69 ~~~a~~~la~~~~~lg~y~~A~~~~~~a~~-----l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      ...+++++|.+|..+|++++|+.+|++++.     .+|....+...++.+...+++.
T Consensus       221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~  277 (378)
T 3q15_A          221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQT  277 (378)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCH
Confidence            356889999999999999999999999998     6666666666677776655543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.84  E-value=2.4e-08  Score=100.19  Aligned_cols=117  Identities=15%  Similarity=0.168  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------C
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNS---AELFADRAQASIKLQNFTEAVADANRAIEL--------E   66 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~-----~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l--------~   66 (379)
                      ..++..+..+..+|+|++|+.+|.++|.+     .+++   ...+.++|.+|..+|+|++|+..+.+++.+        +
T Consensus       310 ~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H  389 (490)
T 3n71_A          310 KDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN  389 (490)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence            34566777888999999999999999998     3444   467899999999999999999999999977        3


Q ss_pred             CCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-----CCCChHHHH---HHHHHHHHHHh
Q 016973           67 PSMSKAYWRKATACMKLEEYETAKVALEKGASL-----APGDSRFTN---LIKECEERIAE  119 (379)
Q Consensus        67 p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l-----~p~~~~~~~---~l~~~~~~l~~  119 (379)
                      |..+..+.++|.+|..+|+|++|+..|++|+.+     .|+++....   .+..+...++.
T Consensus       390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~  450 (490)
T 3n71_A          390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM  450 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence            445678999999999999999999999999985     678876554   44445444443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.84  E-value=1.5e-08  Score=94.24  Aligned_cols=87  Identities=9%  Similarity=-0.024  Sum_probs=76.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhccCHHHH
Q 016973           12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM--SKAYWRKATACMKLEEYETA   89 (379)
Q Consensus        12 ~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~--~~a~~~la~~~~~lg~y~~A   89 (379)
                      +...+++.+|+..|.+++..+|+++.+++++|.+|..+|++++|+..|.+++.++|++  ..++.++|.++..+|+.++|
T Consensus       195 l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a  274 (287)
T 3qou_A          195 LLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL  274 (287)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred             HHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence            3333344445566677788899999999999999999999999999999999999998  89999999999999999999


Q ss_pred             HHHHHHHHh
Q 016973           90 KVALEKGAS   98 (379)
Q Consensus        90 ~~~~~~a~~   98 (379)
                      ...|++++.
T Consensus       275 ~~~~r~al~  283 (287)
T 3qou_A          275 ASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999875

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.82  E-value=2.9e-08  Score=95.04  Aligned_cols=115  Identities=5%  Similarity=-0.113  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-c-CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDD-YFELAYDLYSQAIEISPNSAELFADRAQASIKL-Q-NFTEAVADANRAIELEPSMSKAYWRKATA   79 (379)
Q Consensus         3 ~~l~~~g~~~~~~g-~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~l-g-~~~eAl~~~~~Al~l~p~~~~a~~~la~~   79 (379)
                      ..+..++.++...| .+++++.+++++|..+|.+..+|..|+.++..+ + ++++++..+.+++.++|.+..+|..++.+
T Consensus        89 taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wv  168 (349)
T 3q7a_A           89 TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWL  168 (349)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            46788999999999 599999999999999999999999999999998 8 99999999999999999999999999999


Q ss_pred             HHhccCHH--------HHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973           80 CMKLEEYE--------TAKVALEKGASLAPGDSRFTNLIKECEERI  117 (379)
Q Consensus        80 ~~~lg~y~--------~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l  117 (379)
                      +.++|.++        +++.++.++++.+|.|..++..+..+...+
T Consensus       169 l~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l  214 (349)
T 3q7a_A          169 YSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR  214 (349)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred             HHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            99999998        999999999999999999988887775443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.82  E-value=3.2e-08  Score=87.66  Aligned_cols=110  Identities=15%  Similarity=0.036  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ----NFTEAVADANRAIELEPSMSKAYWRKA   77 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg----~~~eAl~~~~~Al~l~p~~~~a~~~la   77 (379)
                      +..++..|..++..+++++|+.+|.+++..  .++.+++++|.+|.. +    ++++|+..|.+|+.  +.++.+++.+|
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg   92 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLA   92 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHH
Confidence            457888999999999999999999999886  578899999999988 7    89999999999965  46789999999


Q ss_pred             HHHHh----ccCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHH
Q 016973           78 TACMK----LEEYETAKVALEKGASLAPG--DSRFTNLIKECEER  116 (379)
Q Consensus        78 ~~~~~----lg~y~~A~~~~~~a~~l~p~--~~~~~~~l~~~~~~  116 (379)
                      .+|+.    .+++++|+.+|+++.+..+.  +......+..+...
T Consensus        93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~  137 (212)
T 3rjv_A           93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS  137 (212)
T ss_dssp             HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence            99988    88999999999999988873  35666666655443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=3e-08  Score=80.82  Aligned_cols=90  Identities=19%  Similarity=0.249  Sum_probs=82.8

Q ss_pred             hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHH
Q 016973           31 ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT  107 (379)
Q Consensus        31 ~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~---~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~  107 (379)
                      .++.+...++.+|.+++..|+|++|+..|.+++.++|.+   ..+++.+|.+|+.+|+|++|+.+|++++.++|++..+.
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            457789999999999999999999999999999999987   89999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHhh
Q 016973          108 NLIKECEERIAEE  120 (379)
Q Consensus       108 ~~l~~~~~~l~~~  120 (379)
                      ..++.+...+++.
T Consensus       103 ~~~a~~~~~~~~~  115 (148)
T 2dba_A          103 YRRSQALEKLGRL  115 (148)
T ss_dssp             HHHHHHHHHHTCH
T ss_pred             HHHHHHHHHcCCH
Confidence            8888887766554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.81  E-value=3.1e-08  Score=78.25  Aligned_cols=84  Identities=10%  Similarity=-0.038  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATA   79 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~--~~~a~~~la~~   79 (379)
                      +..++..|.+++..|+|++|+..|.+++..+|.+..+++++|.+|..+|++++|+..|.+++.+.|.  +..+...+...
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~   98 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVF   98 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence            3567899999999999999999999999999999999999999999999999999999999999874  44555555555


Q ss_pred             HHhccC
Q 016973           80 CMKLEE   85 (379)
Q Consensus        80 ~~~lg~   85 (379)
                      +..+++
T Consensus        99 l~~l~~  104 (115)
T 2kat_A           99 LRRLAR  104 (115)
T ss_dssp             HHHHHH
T ss_pred             HHHhcc
Confidence            555443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.81  E-value=6.1e-08  Score=77.46  Aligned_cols=82  Identities=13%  Similarity=0.022  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA   79 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~   79 (379)
                      ..++..|.+++..|+|++|+..|.+++..+|++   +.+++.+|.||..+|++++|+..|.+++...|++..+...+..+
T Consensus        40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l  119 (129)
T 2xev_A           40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL  119 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            577899999999999999999999999999999   89999999999999999999999999999999998877666654


Q ss_pred             HHhcc
Q 016973           80 CMKLE   84 (379)
Q Consensus        80 ~~~lg   84 (379)
                      ....+
T Consensus       120 ~~l~~  124 (129)
T 2xev_A          120 QSIRL  124 (129)
T ss_dssp             HHHC-
T ss_pred             HHHHh
Confidence            44333

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.80  E-value=4.8e-09  Score=100.99  Aligned_cols=99  Identities=14%  Similarity=0.202  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------H
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM------S   70 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~------~   70 (379)
                      ..+...|..++..|+|++|+.+|.+++.+.+..      ..++.++|.+|..+|++++|+..+.+++.+.+..      .
T Consensus       224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  303 (411)
T 4a1s_A          224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEA  303 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            356677888888888888888888888876543      2377888888888888888888888888877643      6


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 016973           71 KAYWRKATACMKLEEYETAKVALEKGASLAP  101 (379)
Q Consensus        71 ~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p  101 (379)
                      .+++.+|.+|..+|++++|+.+|++++.+.+
T Consensus       304 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  334 (411)
T 4a1s_A          304 QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ  334 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            7788888888888888888888888887754

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.79  E-value=2.5e-08  Score=98.54  Aligned_cols=110  Identities=11%  Similarity=0.150  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CC
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNS---AELFADRAQASIKLQNFTEAVADANRAIEL--------EP   67 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~-----~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l--------~p   67 (379)
                      ..+..+......|+|++|+.+|.++|.+     .|++   ...+.++|.+|..+|+|++|+..+.+++.+        +|
T Consensus       300 ~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp  379 (433)
T 3qww_A          300 NVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL  379 (433)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred             HHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence            3444555556678999999999999997     4555   456889999999999999999999999977        34


Q ss_pred             CCHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-----CCCChHHHHHHHHH
Q 016973           68 SMSKAYWRKATACMKLEEYETAKVALEKGASL-----APGDSRFTNLIKEC  113 (379)
Q Consensus        68 ~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l-----~p~~~~~~~~l~~~  113 (379)
                      +.+..++++|.+|..+|+|++|+..|++|+++     .|+++........+
T Consensus       380 ~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l  430 (433)
T 3qww_A          380 NVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI  430 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            56778999999999999999999999999885     68888766554443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.77  E-value=3.7e-08  Score=87.25  Aligned_cols=110  Identities=14%  Similarity=-0.004  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCC--CCHH
Q 016973            2 ATDLEKKAKEAFIDD----YFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEP--SMSK   71 (379)
Q Consensus         2 A~~l~~~g~~~~~~g----~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~----lg~~~eAl~~~~~Al~l~p--~~~~   71 (379)
                      +..++..|..++. +    ++++|+.+|.+++.  +.++.+++++|.+|..    .+++.+|+..|.+|+.+++  .++.
T Consensus        50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~  126 (212)
T 3rjv_A           50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVD  126 (212)
T ss_dssp             HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHH
T ss_pred             HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHH
Confidence            3567788888887 6    89999999999966  4678899999999987    7899999999999998887  3589


Q ss_pred             HHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 016973           72 AYWRKATACMK----LEEYETAKVALEKGASLAPGDSRFTNLIKECEE  115 (379)
Q Consensus        72 a~~~la~~~~~----lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  115 (379)
                      +++.+|.+|..    .+++++|+.+|+++.++ +.+......+..+..
T Consensus       127 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~  173 (212)
T 3rjv_A          127 AQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ  173 (212)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence            99999999998    88999999999999988 556666666666543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.77  E-value=8.7e-09  Score=94.92  Aligned_cols=117  Identities=15%  Similarity=0.131  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------H
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM------S   70 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~------~   70 (379)
                      ..+...|..++..|++++|+.+|.+++...+..      ..++..+|.++..+|++++|+..+.+++.+.+..      .
T Consensus       184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  263 (338)
T 3ro2_A          184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA  263 (338)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence            457788999999999999999999999885432      3488999999999999999999999999987654      7


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCh------HHHHHHHHHHHHHHh
Q 016973           71 KAYWRKATACMKLEEYETAKVALEKGASLAPGDS------RFTNLIKECEERIAE  119 (379)
Q Consensus        71 ~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~------~~~~~l~~~~~~l~~  119 (379)
                      .+++.+|.++..+|++++|+.+|++++.+.+...      .....++.+...+++
T Consensus       264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~  318 (338)
T 3ro2_A          264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN  318 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence            8999999999999999999999999998865332      244445555554444

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.74  E-value=9.8e-08  Score=74.92  Aligned_cols=76  Identities=16%  Similarity=0.130  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEIS-------PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYW   74 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~-------p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~   74 (379)
                      +..++..|..++..++|..|+..|.+|+...       .....++.++|.|++++|+++.|+..+.+|+.++|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            4567788888888888888888888888763       223556666666666666666666666666666666666655


Q ss_pred             HHH
Q 016973           75 RKA   77 (379)
Q Consensus        75 ~la   77 (379)
                      +++
T Consensus        85 n~~   87 (104)
T 2v5f_A           85 NLK   87 (104)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.74  E-value=3e-08  Score=85.45  Aligned_cols=118  Identities=8%  Similarity=0.104  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI---SPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPS------   68 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~---~p~~----~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~------   68 (379)
                      +..+...|..++..|++++|+.+|.+++.+   .+++    ..++.++|.++..+|++++|+..+.+++.+.+.      
T Consensus        66 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  145 (203)
T 3gw4_A           66 HRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA  145 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHH
Confidence            346788999999999999999999999998   4433    567899999999999999999999999977431      


Q ss_pred             CHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           69 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        69 ~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      ...++..+|.++..+|++++|+.+|++++.+...... ..+...+...+...
T Consensus       146 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~~~  196 (203)
T 3gw4_A          146 IACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELED-SEAVNELMTRLNGL  196 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHhcccch
Confidence            2446789999999999999999999999988543322 13444444444443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.72  E-value=9.4e-08  Score=94.40  Aligned_cols=113  Identities=18%  Similarity=0.127  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------C
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNS---AELFADRAQASIKLQNFTEAVADANRAIEL--------E   66 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~-----~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l--------~   66 (379)
                      ..+......+..+|+|++|+.+|.++|.+     .+++   ...+.++|.+|..+|+|++|+..+.+++.+        +
T Consensus       288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H  367 (429)
T 3qwp_A          288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH  367 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence            34556667788999999999999999986     3455   467899999999999999999999999977        3


Q ss_pred             CCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHH
Q 016973           67 PSMSKAYWRKATACMKLEEYETAKVALEKGASL-----APGDSRFTNLIKECEE  115 (379)
Q Consensus        67 p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l-----~p~~~~~~~~l~~~~~  115 (379)
                      |..+..++++|.+|..+|+|++|+..|++|+++     .|+++.....+..+..
T Consensus       368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~  421 (429)
T 3qwp_A          368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEE  421 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            445678999999999999999999999999885     7888876665444433

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.68  E-value=4.9e-08  Score=77.37  Aligned_cols=85  Identities=15%  Similarity=0.171  Sum_probs=74.6

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC-------hHHH
Q 016973           35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD-------SRFT  107 (379)
Q Consensus        35 ~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~-------~~~~  107 (379)
                      .+..++.+|.+++..|++++|+..|.+++.++|.++.+++.+|.+|+.+|++++|+.+|++++.+.|.+       ....
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            356789999999999999999999999999999999999999999999999999999999999998876       5555


Q ss_pred             HHHHHHHHHHHh
Q 016973          108 NLIKECEERIAE  119 (379)
Q Consensus       108 ~~l~~~~~~l~~  119 (379)
                      ..++.+...++.
T Consensus        83 ~~la~~~~~~~~   94 (131)
T 1elr_A           83 ARIGNSYFKEEK   94 (131)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcc
Confidence            666666555444

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.65  E-value=1.5e-07  Score=94.59  Aligned_cols=114  Identities=10%  Similarity=-0.023  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA-ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC-   80 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~-~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~-   80 (379)
                      ..++..|..+...|++++|+.+|++++..+|.++ .+|..++.++.++|++++|+..|.+|+...|.....++..+.+. 
T Consensus       322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~  401 (530)
T 2ooe_A          322 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY  401 (530)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            4567788888899999999999999999999885 58888999888888899999999999888887777777766653 


Q ss_pred             HhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (379)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (379)
                      ..+|++++|...|+++++..|++..++..+..+...
T Consensus       402 ~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~  437 (530)
T 2ooe_A          402 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH  437 (530)
T ss_dssp             HHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh
Confidence            458888999999999988888888776665555443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.64  E-value=4.6e-07  Score=71.02  Aligned_cols=86  Identities=15%  Similarity=0.060  Sum_probs=74.8

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHH
Q 016973           35 SAELFADRAQASIKLQNFTEAVADANRAIELE-------PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT  107 (379)
Q Consensus        35 ~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~-------p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~  107 (379)
                      ++.-.+.+|..++..++|..|+..|..|+.+.       .....++..+|.+++++|+++.|+..++++++++|++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            35567889999999999999999999999873       34678999999999999999999999999999999999987


Q ss_pred             HHHHHHHHHHHhh
Q 016973          108 NLIKECEERIAEE  120 (379)
Q Consensus       108 ~~l~~~~~~l~~~  120 (379)
                      ..+..++..+...
T Consensus        84 ~n~~~~~~~~~~~   96 (104)
T 2v5f_A           84 GNLKYFEYIMAKE   96 (104)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhc
Confidence            7777666655543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.63  E-value=5.1e-08  Score=90.59  Aligned_cols=115  Identities=10%  Similarity=0.020  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-C-HHHHHHHHHHHHh
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS-M-SKAYWRKATACMK   82 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~-~-~~a~~~la~~~~~   82 (379)
                      ....|..+...|+|++|+++|..++...|.+. .++.+|.++++.++|++|+..|..++..... . ..+++.+|.++..
T Consensus       105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~  183 (282)
T 4f3v_A          105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN  183 (282)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999888 9999999999999999999999987665322 1 4589999999999


Q ss_pred             ccCHHHHHHHHHHHHhcC--CC-ChHHHHHHHHHHHHHHhh
Q 016973           83 LEEYETAKVALEKGASLA--PG-DSRFTNLIKECEERIAEE  120 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~--p~-~~~~~~~l~~~~~~l~~~  120 (379)
                      +|++++|+.+|+++....  |. .......++.|...++..
T Consensus       184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~  224 (282)
T 4f3v_A          184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE  224 (282)
T ss_dssp             TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH
T ss_pred             CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH
Confidence            999999999999998654  54 445666777777766665

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.62  E-value=3.6e-07  Score=91.87  Aligned_cols=107  Identities=13%  Similarity=0.077  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 016973            3 TDLEKKAKEAFI-------DDYFE-------LAYDLYSQAIE-ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP   67 (379)
Q Consensus         3 ~~l~~~g~~~~~-------~g~y~-------~Al~~y~~al~-~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p   67 (379)
                      +.|+..|..+..       .|+++       +|+..|.+|+. .+|++..+++.+|.++..+|++++|+..|++++.+.|
T Consensus       273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p  352 (530)
T 2ooe_A          273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED  352 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc
Confidence            456777777775       79987       99999999997 8999999999999999999999999999999999999


Q ss_pred             CCH-HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHH
Q 016973           68 SMS-KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL  109 (379)
Q Consensus        68 ~~~-~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~  109 (379)
                      .++ .+|+.+|.++.++|++++|+..|+++++..|........
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~  395 (530)
T 2ooe_A          353 IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT  395 (530)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHH
T ss_pred             cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHH
Confidence            885 699999999999999999999999999998876654433

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.62  E-value=3.7e-07  Score=74.03  Aligned_cols=108  Identities=9%  Similarity=0.031  Sum_probs=94.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHhccCH
Q 016973           12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTE---AVADANRAIELE-P-SMSKAYWRKATACMKLEEY   86 (379)
Q Consensus        12 ~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~e---Al~~~~~Al~l~-p-~~~~a~~~la~~~~~lg~y   86 (379)
                      .........+...|.+.+..++.+....+++|.|+.+..+...   ++..+...+..+ | ...+++|.+|+.++++|+|
T Consensus        11 ~~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y   90 (126)
T 1nzn_A           11 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY   90 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cCCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence            3444556677888999999888999999999999999987766   999999888877 4 5678999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           87 ETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        87 ~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      ..|+.++..+++..|+|.++......++.++..
T Consensus        91 ~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k  123 (126)
T 1nzn_A           91 EKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  123 (126)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999998888887764

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.59  E-value=7.7e-07  Score=85.36  Aligned_cols=107  Identities=18%  Similarity=0.111  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHH--------------------------------
Q 016973            2 ATDLEKKAKEAFIDDY---FELAYDLYSQAIEISPNSAELFADRAQAS--------------------------------   46 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~---y~~Al~~y~~al~~~p~~~~~~~~ra~~~--------------------------------   46 (379)
                      |-.++.+|..++..++   +.+|+.+|++|++++|+++.++..++.||                                
T Consensus       196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~  275 (372)
T 3ly7_A          196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN  275 (372)
T ss_dssp             GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence            3466778888877655   48999999999999999977777555554                                


Q ss_pred             ------------HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHH
Q 016973           47 ------------IKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI  110 (379)
Q Consensus        47 ------------~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l  110 (379)
                                  ...|++++|+..+++|+.++| +..+|..+|.++...|++++|++.|.+|+.++|..+. ..|+
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t-~~~~  349 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT-LYWI  349 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH-HHHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh-HHHH
Confidence                        234888999999999999986 4778888899999999999999999999999998763 3443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.55  E-value=9.4e-07  Score=72.83  Aligned_cols=89  Identities=13%  Similarity=0.019  Sum_probs=80.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-
Q 016973            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYWRKATACMK-   82 (379)
Q Consensus         8 ~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~----lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~-   82 (379)
                      .|..++..+.+++|+.+|.++.+.  .++.+++++|.+|..    .+++.+|+..|.+|...  .++.+++++|.+|.. 
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G  106 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG  106 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence            677888888899999999999987  678999999999998    89999999999999887  579999999999999 


Q ss_pred             ---ccCHHHHHHHHHHHHhcC
Q 016973           83 ---LEEYETAKVALEKGASLA  100 (379)
Q Consensus        83 ---lg~y~~A~~~~~~a~~l~  100 (379)
                         .+++++|+.+|+++.++.
T Consensus       107 ~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A          107 KGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCcCHHHHHHHHHHHHHCC
Confidence               899999999999998874

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.51  E-value=5.1e-07  Score=85.89  Aligned_cols=99  Identities=9%  Similarity=0.045  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCC
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELE--------PSM   69 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~--------p~~   69 (379)
                      .+...|..++..|+|++|+..|.+++.+.+..      ..++.++|.++..+|++++|+..+.+++.+.        |..
T Consensus        55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  134 (373)
T 1hz4_A           55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH  134 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence            45566777777788888888887777764332      2346677777888888888888888777764        233


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 016973           70 SKAYWRKATACMKLEEYETAKVALEKGASLAPG  102 (379)
Q Consensus        70 ~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~  102 (379)
                      ..++..+|.+++.+|++++|..+|++++.+.+.
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            456677788888888888888888888777664

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.46  E-value=1e-06  Score=83.75  Aligned_cols=98  Identities=19%  Similarity=0.218  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----CH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEIS--------PNSAELFADRAQASIKLQNFTEAVADANRAIELEPS-----MS   70 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~--------p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~-----~~   70 (379)
                      .+...|..++..|+|++|+.+|.+++...        |....++.++|.++..+|++++|+..+.+++.+.+.     ..
T Consensus        95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  174 (373)
T 1hz4_A           95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  174 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence            45778999999999999999999999974        334567888999999999999999999999999875     35


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 016973           71 KAYWRKATACMKLEEYETAKVALEKGASLAP  101 (379)
Q Consensus        71 ~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p  101 (379)
                      .+++.+|.++..+|++++|...+++++.+.+
T Consensus       175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~  205 (373)
T 1hz4_A          175 QCLAMLIQCSLARGDLDNARSQLNRLENLLG  205 (373)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            6889999999999999999999999998743

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.44  E-value=1.3e-06  Score=86.96  Aligned_cols=106  Identities=12%  Similarity=0.003  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 016973            3 TDLEKKAKEAFIDD---YFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYWR   75 (379)
Q Consensus         3 ~~l~~~g~~~~~~g---~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~----lg~~~eAl~~~~~Al~l~p~~~~a~~~   75 (379)
                      ..++..|..++..|   ++++|+.+|.++++.  .++.+++++|.+|..    .+++++|+..|.+|+...  ++.++++
T Consensus       329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~  404 (490)
T 2xm6_A          329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQ  404 (490)
T ss_dssp             HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHH
Confidence            35566777777655   778888888888776  457788888888887    788888888888887764  5788888


Q ss_pred             HHHHHHh----ccCHHHHHHHHHHHHhcCCC---ChHHHHHHHH
Q 016973           76 KATACMK----LEEYETAKVALEKGASLAPG---DSRFTNLIKE  112 (379)
Q Consensus        76 la~~~~~----lg~y~~A~~~~~~a~~l~p~---~~~~~~~l~~  112 (379)
                      +|.+|+.    .+++++|+.+|+++++.+|+   +..+..++..
T Consensus       405 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~  448 (490)
T 2xm6_A          405 LGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKK  448 (490)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHh
Confidence            8888887    78888888888888888744   5555554443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.36  E-value=7.7e-07  Score=89.25  Aligned_cols=98  Identities=10%  Similarity=0.006  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNS---AELFADRAQASIKLQNFTEAVADANRAIEL-----EPS   68 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~-----~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l-----~p~   68 (379)
                      +..+.+.|..|...|+|++|+.+|.++|.+     .+++   ...+.++|.+|..+|+|++|+..|.+|+.+     .|+
T Consensus       351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~  430 (490)
T 3n71_A          351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS  430 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            567889999999999999999999999987     4444   567899999999999999999999999976     344


Q ss_pred             C---HHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973           69 M---SKAYWRKATACMKLEEYETAKVALEKGASL   99 (379)
Q Consensus        69 ~---~~a~~~la~~~~~lg~y~~A~~~~~~a~~l   99 (379)
                      +   ....-.++.++..++.|++|...|+++.+.
T Consensus       431 Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          431 HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4   556678999999999999999999887543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.36  E-value=1e-05  Score=80.40  Aligned_cols=107  Identities=12%  Similarity=0.002  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHH
Q 016973            2 ATDLEKKAKEAFI----DDYFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAY   73 (379)
Q Consensus         2 A~~l~~~g~~~~~----~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~----lg~~~eAl~~~~~Al~l~p~~~~a~   73 (379)
                      ++.++..|..++.    .+++++|+.+|.+++..  .++.+++.+|.+|..    .+++++|+..|.+++..+  ++.++
T Consensus        39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~  114 (490)
T 2xm6_A           39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LPQAQ  114 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHH
Confidence            3456777777777    78888888888888776  467788888888887    788888888888887653  67788


Q ss_pred             HHHHHHHHh----ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 016973           74 WRKATACMK----LEEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (379)
Q Consensus        74 ~~la~~~~~----lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (379)
                      +++|.+|..    .+++++|+.+|+++...  ++......++.+.
T Consensus       115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y  157 (490)
T 2xm6_A          115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAY  157 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence            888888877    77888888888887665  3455555555443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.31  E-value=3.6e-06  Score=77.89  Aligned_cols=86  Identities=12%  Similarity=0.093  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHh-ccCHHH
Q 016973           18 FELAYDLYSQAIEISPN--SAELFADRAQASIKL-----QNFTEAVADANRAIELEPSM-SKAYWRKATACMK-LEEYET   88 (379)
Q Consensus        18 y~~Al~~y~~al~~~p~--~~~~~~~ra~~~~~l-----g~~~eAl~~~~~Al~l~p~~-~~a~~~la~~~~~-lg~y~~   88 (379)
                      ...|...++++|+++|+  +..+|..+|..|.++     |+.++|..+|++|++++|+. ..+++.+|..++. .|+++.
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            47889999999999999  567999999999996     99999999999999999975 9999999999988 599999


Q ss_pred             HHHHHHHHHhcCCCC
Q 016973           89 AKVALEKGASLAPGD  103 (379)
Q Consensus        89 A~~~~~~a~~l~p~~  103 (379)
                      |..++++++..+|..
T Consensus       259 a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          259 FDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHcCCCCC
Confidence            999999999998874

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.31  E-value=5.2e-06  Score=82.09  Aligned_cols=107  Identities=12%  Similarity=0.001  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 016973            4 DLEKKAKEAFIDD---YFELAYDLYSQAIEISPNSAELFADRAQASIKL----QNFTEAVADANRAIELEPSMSKAYWRK   76 (379)
Q Consensus         4 ~l~~~g~~~~~~g---~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~l----g~~~eAl~~~~~Al~l~p~~~~a~~~l   76 (379)
                      .++..|..+...|   ++.+|+..|.+++...+.....++++|.+|...    +++++|+..|.++.   |.++.+++++
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L  254 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL  254 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence            5678889999999   999999999999999999999889999999766    79999999999998   8899999999


Q ss_pred             HHH-H--HhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 016973           77 ATA-C--MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE  115 (379)
Q Consensus        77 a~~-~--~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  115 (379)
                      |.+ +  ...+++++|+.+|+++.+.+  +......++.+..
T Consensus       255 g~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          255 AQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY  294 (452)
T ss_dssp             HHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH
Confidence            998 4  57899999999999998654  6777777777654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.29  E-value=3.2e-06  Score=65.03  Aligned_cols=68  Identities=19%  Similarity=0.146  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 016973            2 ATDLEKKAKEAFIDDY---FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM   69 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~---y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~   69 (379)
                      ++.+...|.+++..++   .++|..+|.++|.++|+++.+++.+|..+++.|+|++|+..+.+++..+|..
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            4678889999986666   7999999999999999999999999999999999999999999999999874

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.21  E-value=5.1e-06  Score=69.65  Aligned_cols=79  Identities=10%  Similarity=0.012  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDD---YFELAYDLYSQAIEIS-P-NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK   76 (379)
Q Consensus         2 A~~l~~~g~~~~~~g---~y~~Al~~y~~al~~~-p-~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~l   76 (379)
                      .+..|+.|.++.+.+   ++.+|+.+|..++..+ | .+.+++|++|..|+++|+|++|+++++++++++|++..+...+
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk  111 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  111 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            356789999999988   7789999999999998 6 5689999999999999999999999999999999999887765


Q ss_pred             HHHH
Q 016973           77 ATAC   80 (379)
Q Consensus        77 a~~~   80 (379)
                      -.+-
T Consensus       112 ~~ie  115 (152)
T 1pc2_A          112 RLID  115 (152)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.20  E-value=1.3e-05  Score=65.79  Aligned_cols=93  Identities=14%  Similarity=0.028  Sum_probs=79.9

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----ccCHHHHH
Q 016973           15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK----LEEYETAK   90 (379)
Q Consensus        15 ~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~----lg~y~~A~   90 (379)
                      .+++++|+.+|.++.+.......    +|.+|...+.+++|+..|.+|...  .++.+++++|.+|+.    .+++++|+
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            46789999999999998754433    999999999999999999999987  579999999999999    89999999


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHH
Q 016973           91 VALEKGASLAPGDSRFTNLIKECEE  115 (379)
Q Consensus        91 ~~~~~a~~l~p~~~~~~~~l~~~~~  115 (379)
                      .+|+++.+.  .+......+..+..
T Consensus        82 ~~~~~Aa~~--g~~~a~~~Lg~~y~  104 (138)
T 1klx_A           82 QYYSKACGL--NDQDGCLILGYKQY  104 (138)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHH
Confidence            999999887  56666666666654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.20  E-value=9.1e-06  Score=80.34  Aligned_cols=100  Identities=11%  Similarity=0.016  Sum_probs=64.4

Q ss_pred             HHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973            6 EKKAKEAFID----DYFELAYDLYSQAIEISPNSAELFADRAQA-S--IKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (379)
Q Consensus         6 ~~~g~~~~~~----g~y~~Al~~y~~al~~~p~~~~~~~~ra~~-~--~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~   78 (379)
                      +..|..+...    +++++|+.+|.+++   |.++.+++++|.+ |  ...+++++|+..|.+|+..+  ++.+++.+|.
T Consensus       217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~  291 (452)
T 3e4b_A          217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGK  291 (452)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHH
Confidence            5556665444    57777777777766   6666777777776 3  34567777777777766544  5677777777


Q ss_pred             HHHhcc-----CHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 016973           79 ACMKLE-----EYETAKVALEKGASLAPGDSRFTNLIKECE  114 (379)
Q Consensus        79 ~~~~lg-----~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (379)
                      +|. .|     ++++|+.+|+++.   +++......++.+.
T Consensus       292 ~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y  328 (452)
T 3e4b_A          292 LYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIY  328 (452)
T ss_dssp             HHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHH
T ss_pred             HHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence            666 44     6777777777666   66666555555443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.18  E-value=1.3e-05  Score=75.40  Aligned_cols=99  Identities=11%  Similarity=0.019  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISP--NSAELFADRAQASIKLQNFTEAVADANRAIELEPS----MSKAYWRKA   77 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p--~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~----~~~a~~~la   77 (379)
                      .++..|.+++..|++++|++.|.++|..+|  .+.+++..++.++.++|+++.|.+.+.++...+|+    .-.....++
T Consensus       102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~La  181 (310)
T 3mv2_B          102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLA  181 (310)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHH
Confidence            456789999999999999999999999987  78999999999999999999999999999999983    234445555


Q ss_pred             HH--HHhcc--CHHHHHHHHHHHHhcCCC
Q 016973           78 TA--CMKLE--EYETAKVALEKGASLAPG  102 (379)
Q Consensus        78 ~~--~~~lg--~y~~A~~~~~~a~~l~p~  102 (379)
                      .+  .+..|  ++.+|...|+++....|+
T Consensus       182 ea~v~l~~g~~~~q~A~~~f~El~~~~p~  210 (310)
T 3mv2_B          182 ESYIKFATNKETATSNFYYYEELSQTFPT  210 (310)
T ss_dssp             HHHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence            44  66667  999999999999888886

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.15  E-value=2.1e-05  Score=63.88  Aligned_cols=99  Identities=15%  Similarity=0.085  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH---HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 016973           21 AYDLYSQAIEISPNSAELFADRAQASIKLQNF---TEAVADANRAIELEP-SMSKAYWRKATACMKLEEYETAKVALEKG   96 (379)
Q Consensus        21 Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~---~eAl~~~~~Al~l~p-~~~~a~~~la~~~~~lg~y~~A~~~~~~a   96 (379)
                      ..+.|..-+ ...-++...++.|.|+.+..+.   .+++..+...++.+| ...+.+|.+|+.++++|+|..|+.+...+
T Consensus        26 l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l  104 (134)
T 3o48_A           26 LRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL  104 (134)
T ss_dssp             HHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            334454433 2333578899999999998654   579999999999888 45789999999999999999999999999


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHhh
Q 016973           97 ASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        97 ~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +++.|+|.++......++.++...
T Consensus       105 L~~eP~N~QA~~Lk~~Ie~ki~kd  128 (134)
T 3o48_A          105 FEHERNNKQVGALKSMVEDKIQKE  128 (134)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HhhCCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999998888754

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.13  E-value=7.2e-05  Score=61.55  Aligned_cols=88  Identities=17%  Similarity=0.149  Sum_probs=79.4

Q ss_pred             CCCHHHHHHHHHHHHHccCH---HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHH
Q 016973           33 PNSAELFADRAQASIKLQNF---TEAVADANRAIELEP-SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN  108 (379)
Q Consensus        33 p~~~~~~~~ra~~~~~lg~~---~eAl~~~~~Al~l~p-~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~  108 (379)
                      .-+....+++|.|+.+..+.   .+++..++..+...| ...+.+|.+|+.++++|+|..|+.+...+++..|+|.++..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            45688999999999998764   579999999999888 46789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 016973          109 LIKECEERIAEE  120 (379)
Q Consensus       109 ~l~~~~~~l~~~  120 (379)
                      ....++.++...
T Consensus       116 Lk~~Ie~~i~kd  127 (144)
T 1y8m_A          116 LKSMVEDKIQKE  127 (144)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999998888764

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.11  E-value=6.2e-06  Score=81.05  Aligned_cols=103  Identities=14%  Similarity=0.154  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----------------
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP----------------   67 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p----------------   67 (379)
                      .+...|+.++..|.|++|+.+|+++        ..|.++|.|+.++|+|++|++.+.+|.  ++                
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef  193 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEF  193 (449)
T ss_dssp             -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcH
Confidence            5677888899999999999999876        357888899999999999998888882  22                


Q ss_pred             -----------CCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973           68 -----------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (379)
Q Consensus        68 -----------~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (379)
                                 .++.-...+..+|..+|++++|+..|++++.+++.+......++-+..+
T Consensus       194 ~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k  253 (449)
T 1b89_A          194 RLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK  253 (449)
T ss_dssp             HHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence                       1222233344678889999999999999999999988877777665543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.09  E-value=1.7e-05  Score=87.06  Aligned_cols=105  Identities=13%  Similarity=0.141  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---------------
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP---------------   67 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p---------------   67 (379)
                      ..+...|..++..|+|++|+.+|.++        ..|.++|.||.++|+|++|++.+.+|.....               
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHH
Confidence            35778999999999999999999996        4789999999999999999999998854332               


Q ss_pred             ----------CCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 016973           68 ----------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE  115 (379)
Q Consensus        68 ----------~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  115 (379)
                                .++..+..++..|..+|.|++|+..|++++.+++.+......+..+..
T Consensus      1268 LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A         1268 LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred             HHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHH
Confidence                      134456677788899999999999999999999888776655555543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.09  E-value=1.4e-05  Score=77.07  Aligned_cols=98  Identities=12%  Similarity=0.079  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------------------------------HH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------------------------------------------AE   37 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~----------------------------------------------~~   37 (379)
                      .+...|..|+..|+|++|+.+|.+++...+..                                              ..
T Consensus        57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  136 (434)
T 4b4t_Q           57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS  136 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence            46667777788888877777777766542211                                              34


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 016973           38 LFADRAQASIKLQNFTEAVADANRAIELE------PSMSKAYWRKATACMKLEEYETAKVALEKGASLAP  101 (379)
Q Consensus        38 ~~~~ra~~~~~lg~~~eAl~~~~~Al~l~------p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p  101 (379)
                      ++.++|.+|..+|+|.+|+..+..++...      +....+++.+|.+|..+|+|.+|..+|++++.+.+
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            56678888888888888888888887662      33467888888889999999999988888887643

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.05  E-value=1.9e-05  Score=66.81  Aligned_cols=109  Identities=14%  Similarity=0.139  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---C---
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------AELFADRAQASIKLQNFTEAVADANRAIELEP---S---   68 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p---~---   68 (379)
                      .++.+...++..|.|+.|+-+++.++....++         +.+++.+|.+++..++|..|+..|.+|+++..   .   
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            36788999999999999999999988874333         34789999999999999999999999986632   1   


Q ss_pred             -------------------CHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973           69 -------------------MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (379)
Q Consensus        69 -------------------~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (379)
                                         ..+..|++|.||..++++++|+..++.... .-..+.....++++
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakL  164 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANL  164 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHH
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHH
Confidence                               126889999999999999999998775322 12334455555544

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.04  E-value=1.9e-05  Score=74.20  Aligned_cols=100  Identities=8%  Similarity=-0.014  Sum_probs=83.9

Q ss_pred             HHHHHHHcC--CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------CCCCHHHH
Q 016973            8 KAKEAFIDD--YFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIEL----------EPSMSKAY   73 (379)
Q Consensus         8 ~g~~~~~~g--~y~~Al~~y~~al~~~p~--~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l----------~p~~~~a~   73 (379)
                      .|.+.+..|  ++++|+..|++++...|.  ....+++   |++++|++++|..+++.++.+          +|+++.++
T Consensus       182 ea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~L  258 (310)
T 3mv2_B          182 ESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFL  258 (310)
T ss_dssp             HHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHH
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHH
Confidence            344455556  999999999999888886  3455555   899999999999999987776          58899999


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 016973           74 WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE  112 (379)
Q Consensus        74 ~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~  112 (379)
                      .+++.+.+.+|+  +|.++++++..++|+++-+.....+
T Consensus       259 aN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~k  295 (310)
T 3mv2_B          259 ANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQEI  295 (310)
T ss_dssp             HHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHHH
Confidence            999999999998  8999999999999999976655443

>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}

Probab=98.01  E-value=5.9e-06  Score=67.10  Aligned_cols=84  Identities=14%  Similarity=0.267  Sum_probs=71.5

Q ss_pred             ccccccccccCCeEEEEEEeCCCC--CCceEEEEeecEEEEEEEcCCCceeeecccccccc-ccCc--ceEEEeCcEEEE
Q 016973          177 QILMHEFYQKPEEVVVTVFAKGIP--AKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKI-IPAK--CRYEVLSTKVEI  251 (379)
Q Consensus       177 ~~~~~~W~Qt~~~V~i~i~~k~~~--~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I-~p~~--s~~~v~~~kiei  251 (379)
                      +++.|.=.|+++.|+|.|.++.+.  ..++.+.+.++.|.|+.+     +|.|.|.|-|+| +.+.  ++|......+.|
T Consensus         2 iTP~F~itQd~e~viV~Ik~P~~~~~~sdiei~v~~~~F~F~~~-----PYyLRL~LP~~V~e~~~~kA~YD~d~~~~~V   76 (134)
T 2k8q_A            2 ITPRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQENMIIFHLS-----PYYLRLRFPHELIDDERSTAQYDSKDECINV   76 (134)
T ss_dssp             CCSEEEEEECSSEEEEEEECCSSCCCSSSCCCEECSSSEEECSS-----SSCEEECCSSCEECCSSCEEEEETTTTEEEE
T ss_pred             cCceEEEEECCCEEEEEEEcCccccCccccEEEEeCCEEEEecC-----CeEEEecCCCeeecCCCcceeEeccCCEEEE
Confidence            445577889999999999999998  899999999999998865     799999999999 5554  456666679999


Q ss_pred             EEeecCC-CCCCccc
Q 016973          252 RLAKAEP-IQWSSLE  265 (379)
Q Consensus       252 ~L~K~~~-~~W~~L~  265 (379)
                      +|.|... +.|+.|.
T Consensus        77 tLpK~~~Ge~F~dLD   91 (134)
T 2k8q_A           77 KVAKLNKNEYFEDLD   91 (134)
T ss_dssp             EEEESSTTCCCSSTT
T ss_pred             EEeCCCCCCCCCCcc
Confidence            9999986 6899987

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A

Probab=97.99  E-value=3.9e-05  Score=59.65  Aligned_cols=79  Identities=16%  Similarity=0.140  Sum_probs=67.1

Q ss_pred             ccccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCC-----C----------ceeeeccccccccccCcceEE
Q 016973          179 LMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG-----E----------EAYHFQPRLFGKIIPAKCRYE  243 (379)
Q Consensus       179 ~~~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~-----~----------~~~~~~~~L~~~I~p~~s~~~  243 (379)
                      +.++|+++++.+.|.+.++|+.+++|.|.+.++.|.|+.....     +          ..|.-.+.|-..|++++.+.+
T Consensus         5 P~~di~e~~~~~~v~~~lPG~~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~   84 (100)
T 3gla_A            5 PRVDIKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADGITAA   84 (100)
T ss_dssp             CCEEEEECSSEEEEEEECTTSCGGGCEEEEETTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCTTSCEEE
T ss_pred             CcEEEEECCCEEEEEEECCCCCHHHEEEEEECCEEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCCCcChHHeEEE
Confidence            3488999999999999999999999999999999999864321     1          135667789999999999999


Q ss_pred             EeCcEEEEEEeecC
Q 016973          244 VLSTKVEIRLAKAE  257 (379)
Q Consensus       244 v~~~kiei~L~K~~  257 (379)
                      ..+.-+.|+|.|..
T Consensus        85 ~~~GvL~I~~pK~~   98 (100)
T 3gla_A           85 GRNGVLEIRIPKRP   98 (100)
T ss_dssp             EETTEEEEEEEBC-
T ss_pred             EeCCEEEEEEecCC
Confidence            99999999999975

>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}

Probab=97.89  E-value=9.2e-05  Score=57.79  Aligned_cols=79  Identities=16%  Similarity=0.213  Sum_probs=67.8

Q ss_pred             cccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCCc----------eeeeccccccccccCcceEEEeCcEE
Q 016973          180 MHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEE----------AYHFQPRLFGKIIPAKCRYEVLSTKV  249 (379)
Q Consensus       180 ~~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~----------~~~~~~~L~~~I~p~~s~~~v~~~ki  249 (379)
                      .++|+++++.+.|.+.++|+.+++|.|.+..+.|.|+.......          .|.-.+.|-..|+++..+.+..+.-+
T Consensus         8 ~~di~e~~~~~~v~~~lPG~~~edi~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~~~~GvL   87 (102)
T 4fei_A            8 AADWRDAGTHLDLLLDVPGVDAGTLALAEDGGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVASLAGGVL   87 (102)
T ss_dssp             CEEEEEETTEEEEEEECTTCCGGGCEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEEEETTEE
T ss_pred             cEEEEEcCCEEEEEEECCCCchHhEEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEEEECCEE
Confidence            38899999999999999999999999999999999986532111          36667789999999999999999999


Q ss_pred             EEEEeecCC
Q 016973          250 EIRLAKAEP  258 (379)
Q Consensus       250 ei~L~K~~~  258 (379)
                      .|+|.|..+
T Consensus        88 ~I~lpK~~~   96 (102)
T 4fei_A           88 TVRFEKLRP   96 (102)
T ss_dssp             EEEEEBSSC
T ss_pred             EEEEEccCc
Confidence            999999764

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.87  E-value=4.8e-05  Score=73.35  Aligned_cols=98  Identities=13%  Similarity=0.077  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI------SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS-------   68 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~------~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~-------   68 (379)
                      +..+...|..++..|+|.+|+.+|.+++..      .+....++...|.+|..+|+|.+|...+.+++.+.+.       
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  214 (434)
T 4b4t_Q          135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQT  214 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHH
Confidence            345678899999999999999999999887      2333788999999999999999999999999987532       


Q ss_pred             CHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973           69 MSKAYWRKATACMKLEEYETAKVALEKGASL   99 (379)
Q Consensus        69 ~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l   99 (379)
                      ....+..+|.++...|+|.+|..+|.++++.
T Consensus       215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          215 VAELDLMSGILHCEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            2467788899999999999999999999875

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.86  E-value=7.1e-05  Score=82.32  Aligned_cols=90  Identities=18%  Similarity=0.175  Sum_probs=73.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh----------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 016973            8 KAKEAFIDDYFELAYDLYSQAIEI----------------------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL   65 (379)
Q Consensus         8 ~g~~~~~~g~y~~Al~~y~~al~~----------------------~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l   65 (379)
                      .|..+...|.|++|..+|+++-..                      ..+.+.+|+++|.++...|++.+|+..|.+|   
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence            366666677777666665554211                      1355888999999999999999999999886   


Q ss_pred             CCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 016973           66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG  102 (379)
Q Consensus        66 ~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~  102 (379)
                        +++.+|++.|.++.++|+|++|+.+|..|.+..+.
T Consensus      1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence              88999999999999999999999999999988754

>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}

Probab=97.81  E-value=0.0001  Score=57.77  Aligned_cols=86  Identities=15%  Similarity=0.301  Sum_probs=72.5

Q ss_pred             ccccccccccccCCeEEEEEEeCCCC--CCceEEEEeecEEEEEEEcCCCceeeeccccccccccCc---ceEEEeCcEE
Q 016973          175 RFQILMHEFYQKPEEVVVTVFAKGIP--AKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAK---CRYEVLSTKV  249 (379)
Q Consensus       175 ~~~~~~~~W~Qt~~~V~i~i~~k~~~--~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~---s~~~v~~~ki  249 (379)
                      +++.|.|.=.|+++.|+|.|.++.+.  ..++.+.+.++.|.+.+.     +|-|.|.|-++|.-++   ++|.+....+
T Consensus        14 ~~iTP~F~itQDdefv~I~I~~p~ir~~a~~~ei~vd~~~F~F~~~-----PYyLRL~lP~~vved~~~~A~YD~d~g~~   88 (115)
T 3eud_A           14 KMITPRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQENMIIFHLS-----PYYLRLRFPHELIDDERSTAQYDSKDECI   88 (115)
T ss_dssp             CCBCCCEEEEECSSEEEEEEECCSCCCCSSSCEEEEETTEEEEEET-----TEEEEEECSSCEECSTTCEEEEETTTTEE
T ss_pred             CEeCCcEEEEECCCEEEEEEEcCceecccCccEEEEeCCEEEEecC-----CeEEEEecCcceecCCCcceEEeCCCcEE
Confidence            34556688899999999999999877  779999999999999876     7999999999995433   4788888899


Q ss_pred             EEEEeecCC-CCCCccc
Q 016973          250 EIRLAKAEP-IQWSSLE  265 (379)
Q Consensus       250 ei~L~K~~~-~~W~~L~  265 (379)
                      .|+|.|..+ +..+.|.
T Consensus        89 ~v~lpK~~~GE~F~dLD  105 (115)
T 3eud_A           89 NVKVAKLNKNEYFEDLD  105 (115)
T ss_dssp             EEEEEESSTTCCCCCTT
T ss_pred             EEEEcCCcCCCcCCCcc
Confidence            999999986 5788875

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A

Probab=97.74  E-value=0.00015  Score=58.64  Aligned_cols=79  Identities=13%  Similarity=0.042  Sum_probs=67.8

Q ss_pred             cccccccCCeEEEEEEeCCCCCCceEEEEee-cEEEEEEEcCCC---c--------eeeeccccccccccCcc-eEEEeC
Q 016973          180 MHEFYQKPEEVVVTVFAKGIPAKNVTVDFGE-QILSVSIDVPGE---E--------AYHFQPRLFGKIIPAKC-RYEVLS  246 (379)
Q Consensus       180 ~~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~-~~l~v~~~~~~~---~--------~~~~~~~L~~~I~p~~s-~~~v~~  246 (379)
                      .++|+++++.+.|.+.++|+.+++|.|.+.+ +.|.|+......   .        .|.-.+.|-..|++++. +.+..+
T Consensus        26 ~~di~e~~~~~~v~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~Er~~~f~R~~~LP~~vd~~~i~~A~~~~  105 (123)
T 3aab_A           26 PVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYEN  105 (123)
T ss_dssp             CEEEEEETTEEEEEEECCSCCGGGCEEEEETTTEEEEEEECCCCCCSCEEEECSCSEEEEEEECSSEECTTCCCEEEEET
T ss_pred             cEEEEEcCCEEEEEEECCCCCHHHEEEEEeCCCEEEEEEEEeccCCCeEEEEEEeEEEEEEEECCCCcCcchhCeeEEcC
Confidence            3889999999999999999999999999999 999999764321   1        45666789999999998 888889


Q ss_pred             cEEEEEEeecCC
Q 016973          247 TKVEIRLAKAEP  258 (379)
Q Consensus       247 ~kiei~L~K~~~  258 (379)
                      .-+.|+|.|...
T Consensus       106 GvL~I~lPK~~~  117 (123)
T 3aab_A          106 GVLTIRIPIAGT  117 (123)
T ss_dssp             TEEEEEEEGGGE
T ss_pred             CEEEEEEEcCCC
Confidence            999999999753

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.63  E-value=8.2e-05  Score=73.24  Aligned_cols=82  Identities=10%  Similarity=0.024  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNS---AELFADRAQASIKLQNFTEAVADANRAIEL-----EPS   68 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~-----~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l-----~p~   68 (379)
                      +..+.+.|..|...|+|++|+.+|.++|.+     .+++   ...++++|.+|..+|+|++|+..+.+|+.+     .|+
T Consensus       329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~  408 (429)
T 3qwp_A          329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE  408 (429)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            567888999999999999999999999987     3444   567899999999999999999999999977     455


Q ss_pred             CH---HHHHHHHHHHHhc
Q 016973           69 MS---KAYWRKATACMKL   83 (379)
Q Consensus        69 ~~---~a~~~la~~~~~l   83 (379)
                      ++   ..+..++.+...+
T Consensus       409 Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          409 HSLIEDLILLLEECDANI  426 (429)
T ss_dssp             SHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHH
Confidence            54   3445555555443

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A

Probab=97.56  E-value=0.00044  Score=58.56  Aligned_cols=78  Identities=12%  Similarity=0.145  Sum_probs=67.0

Q ss_pred             ccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCC-----C-----------ceeeeccccccccccCcceEEE
Q 016973          181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG-----E-----------EAYHFQPRLFGKIIPAKCRYEV  244 (379)
Q Consensus       181 ~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~-----~-----------~~~~~~~~L~~~I~p~~s~~~v  244 (379)
                      ++++++++.+.|.+.++|+.+++|+|.+.++.|.|+.....     +           ..|.-.+.|-..|++++.+.+.
T Consensus        59 vdi~e~~~~~~v~~dlPG~~~edi~V~~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~vd~~~i~A~~  138 (161)
T 4eld_A           59 ISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKF  138 (161)
T ss_dssp             EEEEECSSEEEEEEECTTCCGGGEEEEEETTEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCBCGGGCEEEE
T ss_pred             eeEEEeCCEEEEEEECCCCChHhEEEEEECCEEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCCcccccEEEEE
Confidence            78999999999999999999999999999999999875322     1           1355667899999999999999


Q ss_pred             eCcEEEEEEeecCC
Q 016973          245 LSTKVEIRLAKAEP  258 (379)
Q Consensus       245 ~~~kiei~L~K~~~  258 (379)
                      .+.-++|+|.|.+.
T Consensus       139 ~nGvL~I~lpK~~~  152 (161)
T 4eld_A          139 ENGVLSVILPKAES  152 (161)
T ss_dssp             ETTEEEEEEEBCGG
T ss_pred             ECCEEEEEEEcCCC
Confidence            99999999999753

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.53  E-value=0.00034  Score=56.48  Aligned_cols=78  Identities=12%  Similarity=0.037  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFEL---AYDLYSQAIEIS-P-NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA   77 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~---Al~~y~~al~~~-p-~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la   77 (379)
                      +.-|+.|.++.+..+...   +|.++...+..+ | ..-++++.+|..++++|+|.+|+++++.++++.|.+..|.-.+.
T Consensus        36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~  115 (126)
T 1nzn_A           36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER  115 (126)
T ss_dssp             HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            466888889998888876   999999999886 4 46789999999999999999999999999999999988876655


Q ss_pred             HHH
Q 016973           78 TAC   80 (379)
Q Consensus        78 ~~~   80 (379)
                      .+-
T Consensus       116 ~i~  118 (126)
T 1nzn_A          116 LID  118 (126)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}

Probab=97.53  E-value=0.0004  Score=54.03  Aligned_cols=78  Identities=17%  Similarity=0.160  Sum_probs=66.0

Q ss_pred             ccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcC---CC-----ceeeeccccccccccCcceEEE-eCcEEEE
Q 016973          181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GE-----EAYHFQPRLFGKIIPAKCRYEV-LSTKVEI  251 (379)
Q Consensus       181 ~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~---~~-----~~~~~~~~L~~~I~p~~s~~~v-~~~kiei  251 (379)
                      .|++++++.+.|.+-++|+.++++.|.+.++.|.|+....   ++     ..|.-.+.|-..|++++.+.++ .+.-+.|
T Consensus         4 vdi~e~~~~~~v~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~nGvL~I   83 (101)
T 2wj5_A            4 AQVPTDPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVLSI   83 (101)
T ss_dssp             CCCCCCSSCEEEEEECTTSCGGGEEEEEETTEEEEEEEEEECSSTTCCEEEEEEEEEECCTTBCTTCCEEEECTTSEEEE
T ss_pred             EEEEEeCCEEEEEEECCCCcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHCEEEECCCCEEEE
Confidence            6899999999999999999999999999999999986532   11     1255677899999999999999 6889999


Q ss_pred             EEeecCC
Q 016973          252 RLAKAEP  258 (379)
Q Consensus       252 ~L~K~~~  258 (379)
                      +|.|...
T Consensus        84 ~lPK~~~   90 (101)
T 2wj5_A           84 QATPASA   90 (101)
T ss_dssp             EECBCCC
T ss_pred             EEECCCc
Confidence            9999753

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.51  E-value=0.0009  Score=61.84  Aligned_cols=81  Identities=15%  Similarity=0.065  Sum_probs=65.7

Q ss_pred             CCCCHHHHHHHHHHHHH---c--------cCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhc-----cCHHHHHHHH
Q 016973           32 SPNSAELFADRAQASIK---L--------QNFTEAVADANRAIELEPS--MSKAYWRKATACMKL-----EEYETAKVAL   93 (379)
Q Consensus        32 ~p~~~~~~~~ra~~~~~---l--------g~~~eAl~~~~~Al~l~p~--~~~a~~~la~~~~~l-----g~y~~A~~~~   93 (379)
                      +|.++++++-.|.....   +        +....|...+++|++++|+  +..+|..+|..|..+     |+.++|..+|
T Consensus       148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~f  227 (301)
T 3u64_A          148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAF  227 (301)
T ss_dssp             CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHH
Confidence            56668888887777644   2        2357899999999999999  677999999999996     9999999999


Q ss_pred             HHHHhcCCCC-hHHHHHHHH
Q 016973           94 EKGASLAPGD-SRFTNLIKE  112 (379)
Q Consensus        94 ~~a~~l~p~~-~~~~~~l~~  112 (379)
                      +++++++|+. .......+.
T Consensus       228 erAL~LnP~~~id~~v~YA~  247 (301)
T 3u64_A          228 EHLTRYCSAHDPDHHITYAD  247 (301)
T ss_dssp             HHHHHHCCTTCSHHHHHHHH
T ss_pred             HHHHHhCCCCCchHHHHHHH
Confidence            9999999975 555444444

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.48  E-value=0.00017  Score=71.10  Aligned_cols=70  Identities=13%  Similarity=0.065  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNS---AELFADRAQASIKLQNFTEAVADANRAIEL-----EPS   68 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~-----~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l-----~p~   68 (379)
                      +..+.+.|.+|...|+|++|+.+|.++|.+     .+++   ...+.++|.+|..+|+|++|+..|.+|+.+     .|+
T Consensus       340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~  419 (433)
T 3qww_A          340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKD  419 (433)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC
Confidence            567889999999999999999999999987     4444   567999999999999999999999999977     456


Q ss_pred             CHH
Q 016973           69 MSK   71 (379)
Q Consensus        69 ~~~   71 (379)
                      ++.
T Consensus       420 Hp~  422 (433)
T 3qww_A          420 HPY  422 (433)
T ss_dssp             CHH
T ss_pred             ChH
Confidence            554

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A

Probab=97.48  E-value=0.00049  Score=57.64  Aligned_cols=79  Identities=18%  Similarity=0.218  Sum_probs=66.2

Q ss_pred             cccccccCCeEEEEEEeCCCCCCceEEEEe-ecEEEEEEEcCC-----C----------ceeeeccccccccccCcceEE
Q 016973          180 MHEFYQKPEEVVVTVFAKGIPAKNVTVDFG-EQILSVSIDVPG-----E----------EAYHFQPRLFGKIIPAKCRYE  243 (379)
Q Consensus       180 ~~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~-~~~l~v~~~~~~-----~----------~~~~~~~~L~~~I~p~~s~~~  243 (379)
                      .++|+++++.+.|.+.++|+.+++|.|.+. .+.|.|+.....     +          ..|.-.+.|-..|+++..+.+
T Consensus        45 ~~di~e~~d~~~v~~dlPGv~kedI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~  124 (151)
T 1gme_A           45 RMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAG  124 (151)
T ss_dssp             CEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEEE
T ss_pred             ceEEEEcCCEEEEEEECCCCChHHEEEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCCCccccceEEE
Confidence            388999999999999999999999999995 579999874321     1          135567789899999999999


Q ss_pred             EeCcEEEEEEeecCC
Q 016973          244 VLSTKVEIRLAKAEP  258 (379)
Q Consensus       244 v~~~kiei~L~K~~~  258 (379)
                      ..+.-+.|+|.|...
T Consensus       125 ~~nGvL~I~lPK~~~  139 (151)
T 1gme_A          125 LENGVLTVTVPKAEV  139 (151)
T ss_dssp             EETTEEEEEEECCCC
T ss_pred             EECCEEEEEEEccCc
Confidence            999999999999753

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.35  E-value=0.00056  Score=65.50  Aligned_cols=70  Identities=17%  Similarity=0.174  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYW   74 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~   74 (379)
                      .+...|..++..|++++|+..+++|+.++|+ ..+|..+|.++.-.|++++|+..|.+|+.++|.....++
T Consensus       279 ~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~  348 (372)
T 3ly7_A          279 IYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYW  348 (372)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHH
Confidence            3445666778889999999999999999964 778899999999999999999999999999997764333

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.29  E-value=0.0057  Score=50.68  Aligned_cols=103  Identities=17%  Similarity=-0.002  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 016973            3 TDLEKKAKEAFIDDYF------ELAYDLYSQAIEISPNS--------AELFADRAQASIKLQNFTEAVADANRAIELEPS   68 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y------~~Al~~y~~al~~~p~~--------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~   68 (379)
                      +.|+.-...+-+.|+.      +.-++.|.+|+..-|-.        +.+|.+.|.. ..+++.++|.+.|..|+.++..
T Consensus        14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKk   92 (161)
T 4h7y_A           14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKK   92 (161)
T ss_dssp             HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHH
Confidence            3455556666666888      88889999999987753        4556666644 5679999999999999999999


Q ss_pred             CHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHH
Q 016973           69 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF  106 (379)
Q Consensus        69 ~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~  106 (379)
                      ++.+|...|.--.+.|+...|...+.+|+.+.|...+.
T Consensus        93 FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~  130 (161)
T 4h7y_A           93 FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM  130 (161)
T ss_dssp             BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence            99999999999999999999999999999999987653

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.27  E-value=0.003  Score=51.85  Aligned_cols=78  Identities=12%  Similarity=-0.014  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYF---ELAYDLYSQAIEISPN-SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y---~~Al~~y~~al~~~p~-~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~   78 (379)
                      +..|+.|.++.+..+-   .++|.++...+...|. .-++++.+|..++++|+|.+|+++++.++++.|.+..|.-.+..
T Consensus        40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~  119 (144)
T 1y8m_A           40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  119 (144)
T ss_dssp             HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            4568888888887766   4799999999998884 56899999999999999999999999999999999887766554


Q ss_pred             HH
Q 016973           79 AC   80 (379)
Q Consensus        79 ~~   80 (379)
                      +-
T Consensus       120 Ie  121 (144)
T 1y8m_A          120 VE  121 (144)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.25  E-value=0.00043  Score=67.99  Aligned_cols=109  Identities=12%  Similarity=0.014  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------------CCHHHHHHHHHHHHHccCHHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISP---------------------------NSAELFADRAQASIKLQNFTEAV   56 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p---------------------------~~~~~~~~ra~~~~~lg~~~eAl   56 (379)
                      .+...|.++++.|+|++|+++|.++.  ++                           .+++-+..+..+|.++|++++|+
T Consensus       150 n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai  227 (449)
T 1b89_A          150 NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELI  227 (449)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHH
Confidence            45678999999999999999999982  22                           12223334557899999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHH--HhccCHHHHHHHHHHHHhcCC-----CChHHHHHHHHHH
Q 016973           57 ADANRAIELEPSMSKAYWRKATAC--MKLEEYETAKVALEKGASLAP-----GDSRFTNLIKECE  114 (379)
Q Consensus        57 ~~~~~Al~l~p~~~~a~~~la~~~--~~lg~y~~A~~~~~~a~~l~p-----~~~~~~~~l~~~~  114 (379)
                      ..++.++.+++....++..+|++|  ++.++..+++..|...+.+.|     .+..++..+.-+.
T Consensus       228 ~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly  292 (449)
T 1b89_A          228 TMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY  292 (449)
T ss_dssp             HHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988  668888999998887766655     4554444444443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.24  E-value=0.0024  Score=51.82  Aligned_cols=78  Identities=12%  Similarity=-0.014  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYF---ELAYDLYSQAIEISPN-SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y---~~Al~~y~~al~~~p~-~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~   78 (379)
                      +.-|+.|.++.+..+.   ..+|.++...+..+|. .-++++.+|..++++|+|.+|+++++.++++.|.+..|.-....
T Consensus        41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~  120 (134)
T 3o48_A           41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  120 (134)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            4567788888887765   4799999999999884 47899999999999999999999999999999999888766655


Q ss_pred             HH
Q 016973           79 AC   80 (379)
Q Consensus        79 ~~   80 (379)
                      +-
T Consensus       121 Ie  122 (134)
T 3o48_A          121 VE  122 (134)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A

Probab=97.21  E-value=0.0013  Score=51.54  Aligned_cols=78  Identities=13%  Similarity=0.163  Sum_probs=65.7

Q ss_pred             ccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcC---CC-----ceeeeccccccccccCcceEEE-eCcEEEE
Q 016973          181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GE-----EAYHFQPRLFGKIIPAKCRYEV-LSTKVEI  251 (379)
Q Consensus       181 ~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~---~~-----~~~~~~~~L~~~I~p~~s~~~v-~~~kiei  251 (379)
                      -+++++++.+.|.+-++|+.+++|.|.+..+.|.|+....   ++     ..|.-.+.|-..|++++.+.++ .+.-+.|
T Consensus         5 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~~GvL~I   84 (106)
T 3l1e_A            5 SEVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTF   84 (106)
T ss_dssp             EEEEECSSEEEEEEECTTSCGGGEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCTTBCTTSCEEEECTTSEEEE
T ss_pred             eEEEEcCCEEEEEEECCCCChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEE
Confidence            4688999999999999999999999999999999986421   11     1366677899999999999999 6889999


Q ss_pred             EEeecCC
Q 016973          252 RLAKAEP  258 (379)
Q Consensus       252 ~L~K~~~  258 (379)
                      +|.|...
T Consensus        85 ~~PK~~~   91 (106)
T 3l1e_A           85 SGPKIPS   91 (106)
T ss_dssp             EEEBCCC
T ss_pred             EEEccCc
Confidence            9999764

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.20  E-value=0.0053  Score=59.37  Aligned_cols=95  Identities=16%  Similarity=0.045  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHccCHHHHHHHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------------------AELFADRAQASIKLQNFTEAVADANR   61 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~----------------------~~~~~~ra~~~~~lg~~~eAl~~~~~   61 (379)
                      .+...|......|+...|+..|.+|+.+..-.                      ..++..++.++..+|++.+|+..+..
T Consensus       117 ~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~  196 (388)
T 2ff4_A          117 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA  196 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            45566777778899999999999999983211                      23345577778889999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 016973           62 AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGAS   98 (379)
Q Consensus        62 Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~   98 (379)
                      ++..+|.+-.+|..+-.+|++.|+..+|+..|+++.+
T Consensus       197 ~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          197 LTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998755

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A

Probab=97.19  E-value=0.0028  Score=47.45  Aligned_cols=73  Identities=7%  Similarity=0.096  Sum_probs=61.9

Q ss_pred             cccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCC-----C---ceeeeccccccccccCcceEEEe-CcEEEEEEe
Q 016973          184 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG-----E---EAYHFQPRLFGKIIPAKCRYEVL-STKVEIRLA  254 (379)
Q Consensus       184 ~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~-----~---~~~~~~~~L~~~I~p~~s~~~v~-~~kiei~L~  254 (379)
                      +++++.+.|.+-++|+.+++|.|.+..+.|.|+.....     +   ..|.-.+.|-..|++++.+-++. +.-+.|+|-
T Consensus         3 ~E~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~~~~~GvL~I~lP   82 (85)
T 3q9p_A            3 SHTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAP   82 (85)
T ss_dssp             CCCCCEEEEEEECTTTCCSEEEEEEETTEEEEEEEEC-------CCCEEEEEEEECCTTCCGGGCEEEECTTSEEEEEEE
T ss_pred             cCcCCEEEEEEECCCCChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChHHcEEEECCCCEEEEEEE
Confidence            47889999999999999999999999999999875321     1   24666788999999999999998 889999998


Q ss_pred             ec
Q 016973          255 KA  256 (379)
Q Consensus       255 K~  256 (379)
                      |.
T Consensus        83 K~   84 (85)
T 3q9p_A           83 MP   84 (85)
T ss_dssp             CC
T ss_pred             cC
Confidence            85

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.18  E-value=0.0022  Score=66.62  Aligned_cols=57  Identities=14%  Similarity=-0.048  Sum_probs=25.1

Q ss_pred             HHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 016973            7 KKAKEAFIDDYFELAY-DLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAI   63 (379)
Q Consensus         7 ~~g~~~~~~g~y~~Al-~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al   63 (379)
                      ..|..+...|+.++|+ ..|.+|+...|.+..+++..+..+...|++++|...|++++
T Consensus       348 ~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l  405 (679)
T 4e6h_A          348 NMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI  405 (679)
T ss_dssp             HHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3333344444444443 44444444444444444444444444444444444444444

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.10  E-value=0.0025  Score=66.19  Aligned_cols=99  Identities=5%  Similarity=-0.013  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEI-SPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~-~p~~~~~~~~ra~~~~~lg~-~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      .|...++...+.|+.+.|..+|.+|+.. .+....+|...|...++.++ ++.|...|+++++..|.++..+...+..+.
T Consensus       436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~  515 (679)
T 4e6h_A          436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLI  515 (679)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            3555566677789999999999999988 44456777777777777754 899999999999999999999988999888


Q ss_pred             hccCHHHHHHHHHHHHhcCCC
Q 016973           82 KLEEYETAKVALEKGASLAPG  102 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~  102 (379)
                      ..|+.+.|...|++|+...|+
T Consensus       516 ~~~~~~~AR~lferal~~~~~  536 (679)
T 4e6h_A          516 YVNEESQVKSLFESSIDKISD  536 (679)
T ss_dssp             HHTCHHHHHHHHHHHTTTSSS
T ss_pred             hCCCHHHHHHHHHHHHHhcCC
Confidence            999999999999999998884

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.07  E-value=0.002  Score=54.42  Aligned_cols=78  Identities=18%  Similarity=0.095  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCC-------------------CHHHHHHHHHHHHHccCHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI------SPN-------------------SAELFADRAQASIKLQNFTEAV   56 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~------~p~-------------------~~~~~~~ra~~~~~lg~~~eAl   56 (379)
                      ++.+...|+.+|..++|..|+..|.+||.+      .+.                   ..++.+..|.||.+++++.+|+
T Consensus        63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai  142 (167)
T 3ffl_A           63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAI  142 (167)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHH
Confidence            356788999999999999999999999876      111                   1278899999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHH
Q 016973           57 ADANRAIELEPSMSKAYWRKATAC   80 (379)
Q Consensus        57 ~~~~~Al~l~p~~~~a~~~la~~~   80 (379)
                      ..++.+ -.-...++..+-+|..|
T Consensus       143 ~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          143 AILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             HHHhcC-CchhcCHHHHHHHHHHh
Confidence            876543 12225677777777655

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A

Probab=96.93  E-value=0.0022  Score=48.62  Aligned_cols=73  Identities=10%  Similarity=0.135  Sum_probs=58.2

Q ss_pred             ccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcC----CC----ceeeeccccccccccCcceEEE-eCcEEEEEEee
Q 016973          185 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE----EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIRLAK  255 (379)
Q Consensus       185 Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~----~~----~~~~~~~~L~~~I~p~~s~~~v-~~~kiei~L~K  255 (379)
                      ++++.+.|++.++|+.+++|.|.+.++.|.|+....    ++    ..|.-.+.|-..|++++.+.++ .+.-+.|+|.|
T Consensus         3 ~~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~~GvL~I~~pK   82 (90)
T 2y1y_A            3 MEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSDGVLTVNGPR   82 (90)
T ss_dssp             ---CCEEEEEECTTSCGGGEEEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEECCTTBCGGGCEEEECTTSEEEEEECB
T ss_pred             cCCCEEEEEEECCCCcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEEEEc
Confidence            467889999999999999999999999999986531    11    1366677899999999999999 68899999998


Q ss_pred             cC
Q 016973          256 AE  257 (379)
Q Consensus       256 ~~  257 (379)
                      ..
T Consensus        83 ~~   84 (90)
T 2y1y_A           83 KQ   84 (90)
T ss_dssp             C-
T ss_pred             CC
Confidence            65

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A

Probab=96.64  E-value=0.004  Score=53.33  Aligned_cols=78  Identities=12%  Similarity=0.144  Sum_probs=62.4

Q ss_pred             ccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCC---C-----ceeeeccccccccccCcceEEE-eCcEEEE
Q 016973          181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG---E-----EAYHFQPRLFGKIIPAKCRYEV-LSTKVEI  251 (379)
Q Consensus       181 ~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~---~-----~~~~~~~~L~~~I~p~~s~~~v-~~~kiei  251 (379)
                      .+++++++.+.|.+-++|+.+++|.|++.++.|.|+.....   +     ..|.-.+.|-..|++++.+-++ .+.-+.|
T Consensus        66 ~dv~e~~d~~~v~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~Vd~~~i~A~~s~dGvL~I  145 (175)
T 2klr_A           66 SEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTV  145 (175)
T ss_dssp             ---CCCCSEEEEEECCSSCCGGGEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEECTTTCCTTTCEEEECTTSCEEE
T ss_pred             eEEEEcCCeEEEEEECCCCChHHEEEEEECCEEEEEEEEcccccCCceEEEEEEEEEECCCCcChhHeEEEEcCCCEEEE
Confidence            57899999999999999999999999999999999864321   1     1255677899999999999999 5888999


Q ss_pred             EEeecCC
Q 016973          252 RLAKAEP  258 (379)
Q Consensus       252 ~L~K~~~  258 (379)
                      +|.|...
T Consensus       146 ~lPK~~~  152 (175)
T 2klr_A          146 NGPRKQV  152 (175)
T ss_dssp             EEECC--
T ss_pred             EEECCCC
Confidence            9999753

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.36  E-value=0.0081  Score=62.81  Aligned_cols=79  Identities=18%  Similarity=0.267  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973           19 ELAYDLYSQAIEI--------SPNS----------AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (379)
Q Consensus        19 ~~Al~~y~~al~~--------~p~~----------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~   80 (379)
                      -+|+.++.++|..        .+.+          ..++..-+..++..|+|+-|+..+.+|+.+.|.....|++|+.+|
T Consensus       302 v~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vY  381 (754)
T 4gns_B          302 LDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCH  381 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence            4677777777642        2222          345566677778889999999999999999999999999999999


Q ss_pred             HhccCHHHHHHHHHHHH
Q 016973           81 MKLEEYETAKVALEKGA   97 (379)
Q Consensus        81 ~~lg~y~~A~~~~~~a~   97 (379)
                      ..+|+|+.|+-.+..|.
T Consensus       382 i~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          382 IKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHTTCHHHHHHHHHHSC
T ss_pred             HHhccHHHHHHHHhcCC
Confidence            99999999998877764

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.33  E-value=0.051  Score=54.06  Aligned_cols=101  Identities=11%  Similarity=-0.109  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--------------------------------------
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQA--------------------------------------   45 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~--------------------------------------   45 (379)
                      .|+..+..+...|+.+.|...|.+|+.. |.+..+++..+..                                      
T Consensus       215 lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~  293 (493)
T 2uy1_A          215 VYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHL  293 (493)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHH
Confidence            4566677777788888888888888888 8775444333222                                      


Q ss_pred             --HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCCChHH
Q 016973           46 --SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE-EYETAKVALEKGASLAPGDSRF  106 (379)
Q Consensus        46 --~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg-~y~~A~~~~~~a~~l~p~~~~~  106 (379)
                        +.+.+.++.|...|.+| ...+.....|...|...+.++ +++.|...|+.+++..|+++.+
T Consensus       294 ~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~  356 (493)
T 2uy1_A          294 NYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLL  356 (493)
T ss_dssp             HHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHH
Confidence              22345677777777777 333335566766677666666 4888888888888877777654

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=96.33  E-value=0.016  Score=54.21  Aligned_cols=78  Identities=15%  Similarity=0.118  Sum_probs=67.3

Q ss_pred             ccccccCC----eEEEEEEeCCCCCCceEEEEeecEEEEEEEcCC----C---ceeeeccccccccccCcceEEEe-CcE
Q 016973          181 HEFYQKPE----EVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG----E---EAYHFQPRLFGKIIPAKCRYEVL-STK  248 (379)
Q Consensus       181 ~~W~Qt~~----~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~----~---~~~~~~~~L~~~I~p~~s~~~v~-~~k  248 (379)
                      .|.+.+++    .+.|++-++|+.+++|.|.+..+.|+|+.....    +   ..|.-.+.|-..|++++.+.++. ..-
T Consensus       101 vDi~E~~~dgk~~~~v~~dlPG~~~edI~V~v~~~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A~~~~nGV  180 (314)
T 2bol_A          101 KDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATITTDDV  180 (314)
T ss_dssp             GGCEEECTTSSEEEEEEEECTTCCTTTEEEEEETTEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEECSSSE
T ss_pred             cceEEcCCCCceEEEEEEECCCCchHHeEEEEECCEEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEEEEeCCCE
Confidence            77889999    899999999999999999999999999875321    1   24777788999999999999999 889


Q ss_pred             EEEEEeecCC
Q 016973          249 VEIRLAKAEP  258 (379)
Q Consensus       249 iei~L~K~~~  258 (379)
                      +.|+|.|..+
T Consensus       181 L~I~lPK~~~  190 (314)
T 2bol_A          181 LVIEAPVNEP  190 (314)
T ss_dssp             EEEEEEBSSC
T ss_pred             EEEEEeccCc
Confidence            9999999765

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.74  E-value=0.1  Score=47.38  Aligned_cols=63  Identities=24%  Similarity=0.233  Sum_probs=58.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q 016973            9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSK   71 (379)
Q Consensus         9 g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~   71 (379)
                      ...+++.|++++|+..+...++.+|.+..+...+...+.-.|+++.|+..+..+.+++|....
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            356889999999999999999999999999999999999999999999999999999997643

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.62  E-value=0.15  Score=50.70  Aligned_cols=91  Identities=9%  Similarity=-0.029  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg-~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      +..-+....+.++.+.|..+|.+| ...+.....|...|...+.++ +++.|...|+.++...|+.+..+...+..+..+
T Consensus       289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~  367 (493)
T 2uy1_A          289 RINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRI  367 (493)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence            444555666788899999999999 443345677888888888777 599999999999999999998888888888999


Q ss_pred             cCHHHHHHHHHHH
Q 016973           84 EEYETAKVALEKG   96 (379)
Q Consensus        84 g~y~~A~~~~~~a   96 (379)
                      |+.+.|...|+++
T Consensus       368 ~~~~~aR~l~er~  380 (493)
T 2uy1_A          368 GDEENARALFKRL  380 (493)
T ss_dssp             TCHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999999987

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.62  E-value=0.23  Score=41.99  Aligned_cols=93  Identities=11%  Similarity=-0.017  Sum_probs=73.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hC---------------CCCH
Q 016973            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE--LE---------------PSMS   70 (379)
Q Consensus         8 ~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~--l~---------------p~~~   70 (379)
                      .+-.++-.|+|..|+-++     .+-+.....+..+.||.++++|..|+.+++..+.  ++               |.+-
T Consensus        39 ~~I~LyyngEY~R~Lf~L-----~~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~Dk  113 (242)
T 3kae_A           39 MSIVLYLNGEYTRALFHL-----HKLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDE  113 (242)
T ss_dssp             HHHHHHHTTCHHHHHHHH-----HTCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCH
T ss_pred             hhhhhhhcchHhHHHHHH-----HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchH
Confidence            466778888888887766     3345577788899999999999999999999982  22               3344


Q ss_pred             HH-HHHHHHHHHhccCHHHHHHHHHHHHhcCCCChH
Q 016973           71 KA-YWRKATACMKLEEYETAKVALEKGASLAPGDSR  105 (379)
Q Consensus        71 ~a-~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~  105 (379)
                      +. +..+|.++.++|+.++|+.+|.......|=-+.
T Consensus       114 EfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~  149 (242)
T 3kae_A          114 EFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP  149 (242)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence            43 455799999999999999999999888775443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.19  E-value=0.057  Score=56.43  Aligned_cols=56  Identities=20%  Similarity=0.230  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADA   59 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~   59 (379)
                      -|..++..+...|+|+-|+.+-++|+...|.....|+.+|.||.++|+|+.|+-.+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtL  394 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAI  394 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence            46678899999999999999999999999999999999999999999999999543

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.07  E-value=0.21  Score=48.12  Aligned_cols=93  Identities=13%  Similarity=0.005  Sum_probs=75.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---C----CHHHH
Q 016973            7 KKAKEAFIDDYFELAYDLYSQAIEISPN------SAELFADRAQASIKLQNFTEAVADANRAIELEP---S----MSKAY   73 (379)
Q Consensus         7 ~~g~~~~~~g~y~~Al~~y~~al~~~p~------~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p---~----~~~a~   73 (379)
                      ..|..++..|+|.+|+.++++.+..-..      -.+.+..-...|..++++.++...+..|.....   .    .+...
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            6799999999999999999999886221      156778888899999999999999998876641   1    34556


Q ss_pred             HHHHHHHH-hccCHHHHHHHHHHHHhc
Q 016973           74 WRKATACM-KLEEYETAKVALEKGASL   99 (379)
Q Consensus        74 ~~la~~~~-~lg~y~~A~~~~~~a~~l   99 (379)
                      ..-|.++. ..++|..|..+|-.+++-
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            66788999 899999999999988753

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=94.47  E-value=0.64  Score=46.19  Aligned_cols=103  Identities=15%  Similarity=0.110  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHh
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIELEP-SMSKAYWRKATACMK   82 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~-p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p-~~~~a~~~la~~~~~   82 (379)
                      +...-..+.+.|++++|+.+|.+..... .-+...|..+-.+|.+.|++++|+..|.......- -+...|..+-.+|.+
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~  187 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD  187 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence            3445567889999999999999987762 23567778888888999999999999999887652 266778888889999


Q ss_pred             ccCHHHHHHHHHHHHhc--CCCChHHH
Q 016973           83 LEEYETAKVALEKGASL--APGDSRFT  107 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l--~p~~~~~~  107 (379)
                      .|+.++|...|++..+.  .|+...+.
T Consensus       188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~  214 (501)
T 4g26_A          188 TKNADKVYKTLQRLRDLVRQVSKSTFD  214 (501)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSBCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCcCHHHHH
Confidence            99999999999987654  46554443

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.47  E-value=0.25  Score=49.11  Aligned_cols=79  Identities=10%  Similarity=0.005  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973           38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (379)
Q Consensus        38 ~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (379)
                      .+.++|.+..-...+..|..+|.+|+.+.|.++..|..+|.+....|++-+|+.+|.+++......+.+...+..+-..
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            3455666666667788999999999999999999999999999999999999999999998776666666655555443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.28  E-value=0.21  Score=48.60  Aligned_cols=98  Identities=5%  Similarity=-0.053  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CC----HHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEIS---PNSAELFADRAQASIKLQNFTEAVADANRAIELEP--SM----SKAYW   74 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~---p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p--~~----~~a~~   74 (379)
                      .+...|..+++.|+++.|+++|.++...-   .+-.++++....+++..+++..+...+.+|..+..  .+    .....
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            35678999999999999999999988863   23367888888899999999999999999977632  12    23455


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcCC
Q 016973           75 RKATACMKLEEYETAKVALEKGASLAP  101 (379)
Q Consensus        75 ~la~~~~~lg~y~~A~~~~~~a~~l~p  101 (379)
                      ..|.++...++|..|...|..++.-..
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            678888899999999999988776543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.01  E-value=0.22  Score=49.51  Aligned_cols=79  Identities=15%  Similarity=0.076  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      -+...|+.+.-...+..|..+|.+|+.++|.+...|..+|.++...|++-+|+-+|.+++.....++.+.-++...+..
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            4567899888899999999999999999999999999999999999999999999999998776677777777776653

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.42  E-value=0.95  Score=38.43  Aligned_cols=88  Identities=10%  Similarity=0.003  Sum_probs=61.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CCHHHHHH--
Q 016973            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP--------SMSKAYWR--   75 (379)
Q Consensus         6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p--------~~~~a~~~--   75 (379)
                      -.+-..+...|+++.|+++....     ++...|..+|...+..|+++-|..+|.++-..+.        .+...+-.  
T Consensus         9 ~~rF~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla   83 (177)
T 3mkq_B            9 HIRFDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQ   83 (177)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHH
Confidence            34567788899999999887654     5678899999999999999999888876532211        12222222  


Q ss_pred             -----------HHHHHHhccCHHHHHHHHHHHHh
Q 016973           76 -----------KATACMKLEEYETAKVALEKGAS   98 (379)
Q Consensus        76 -----------la~~~~~lg~y~~A~~~~~~a~~   98 (379)
                                 ...+++.+|++++++..|.+.-+
T Consensus        84 ~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r  117 (177)
T 3mkq_B           84 NIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGS  117 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred             HHHHHCccHHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence                       24556678888888887766543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.24  E-value=0.34  Score=46.46  Aligned_cols=61  Identities=11%  Similarity=-0.003  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE   64 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~   64 (379)
                      .+...+..+...|++.+|+..+..++..+|-+..++..+-.+|+..|+..+|+..|.++..
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3445677888999999999999999999999999999999999999999999999988754

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.03  E-value=0.36  Score=43.84  Aligned_cols=75  Identities=15%  Similarity=0.034  Sum_probs=63.0

Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHH-HHHHHHHHHHHh
Q 016973           45 ASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT-NLIKECEERIAE  119 (379)
Q Consensus        45 ~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~-~~l~~~~~~l~~  119 (379)
                      .+++.|.+++|+..+...++-+|.+......+.+.|+-.|+++.|...++.+.+++|...... .+...+...+..
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R   81 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR   81 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999877544 333444443333

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=92.57  E-value=0.66  Score=38.37  Aligned_cols=73  Identities=15%  Similarity=-0.005  Sum_probs=59.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccC
Q 016973           12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE   85 (379)
Q Consensus        12 ~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~   85 (379)
                      +...++.++|.+.|+.++..+...+-+|...|....+.|++..|...+.+|+.++|.. .-++..|....+.|.
T Consensus        70 ~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~nl~~~~  142 (161)
T 4h7y_A           70 LKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRNLNLQK  142 (161)
T ss_dssp             HHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHHHHTTC
T ss_pred             HHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHhhhcCC
Confidence            3566899999999999999977778889999999999999999999999999999864 344555555555543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.53  E-value=0.37  Score=52.97  Aligned_cols=92  Identities=10%  Similarity=-0.037  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------CCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEIS-----------------------PNSAELFADRAQASIKLQNFTEAVADANR   61 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~-----------------------p~~~~~~~~ra~~~~~lg~~~eAl~~~~~   61 (379)
                      -+-+|.+++..|++++|..+|.+|....                       ...+.+|+.....+.+.+.++.+++.+..
T Consensus       845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l  924 (1139)
T 4fhn_B          845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL  924 (1139)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3778999999999999999998873221                       11245677788888899999999999999


Q ss_pred             HHHhCCC-CH----HHHHHHHHHHHhccCHHHHHHHHHHH
Q 016973           62 AIELEPS-MS----KAYWRKATACMKLEEYETAKVALEKG   96 (379)
Q Consensus        62 Al~l~p~-~~----~a~~~la~~~~~lg~y~~A~~~~~~a   96 (379)
                      |+..... +.    ..|.++-.++..+|+|++|..++...
T Consensus       925 Ai~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~  964 (1139)
T 4fhn_B          925 ADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL  964 (1139)
T ss_dssp             HHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred             HHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence            9988653 22    26788899999999999998887654

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=91.46  E-value=5.8  Score=33.52  Aligned_cols=65  Identities=11%  Similarity=-0.053  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------CCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI-----------------SPNSAE-LFADRAQASIKLQNFTEAVADANRAIE   64 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~-----------------~p~~~~-~~~~ra~~~~~lg~~~eAl~~~~~Al~   64 (379)
                      ...+-.+.++...++|..|+..++..|.-                 +|.+.+ ++..+|..+.++|+-++|+..+.+...
T Consensus        63 Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~  142 (242)
T 3kae_A           63 TSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG  142 (242)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence            45677889999999999999999999932                 344444 456689999999999999999998887


Q ss_pred             hCC
Q 016973           65 LEP   67 (379)
Q Consensus        65 l~p   67 (379)
                      ..+
T Consensus       143 ~~~  145 (242)
T 3kae_A          143 KSF  145 (242)
T ss_dssp             HCC
T ss_pred             Ccc
Confidence            765

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.44  E-value=2.2  Score=41.59  Aligned_cols=95  Identities=11%  Similarity=0.080  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCC----HH
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISP--NS----AELFADRAQASIKLQNFTEAVADANRAIEL---EPSM----SK   71 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p--~~----~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l---~p~~----~~   71 (379)
                      -...+..++..|+|.+|...+......--  .+    .+++..-...|+..+++..|...+.++...   .+..    ..
T Consensus       140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~  219 (445)
T 4b4t_P          140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE  219 (445)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence            35678999999999999999988765411  11    577888888899999999999999887431   2222    35


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973           72 AYWRKATACMKLEEYETAKVALEKGASL   99 (379)
Q Consensus        72 a~~~la~~~~~lg~y~~A~~~~~~a~~l   99 (379)
                      .+...|..+.+.++|.+|..+|..++..
T Consensus       220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          220 YYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            6677889999999999999999988764

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=91.25  E-value=2.6  Score=41.71  Aligned_cols=95  Identities=11%  Similarity=0.114  Sum_probs=74.9

Q ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCHHHHHHHH
Q 016973           16 DYFELAYDLYSQAIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIELE-PSMSKAYWRKATACMKLEEYETAKVAL   93 (379)
Q Consensus        16 g~y~~Al~~y~~al~~~-p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~-p~~~~a~~~la~~~~~lg~y~~A~~~~   93 (379)
                      +.++.|+.+|.+..... .-+...|..+..+|.+.|++++|+..+....... .-+...|..+-.+|.+.|+.++|...|
T Consensus        84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~  163 (501)
T 4g26_A           84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD  163 (501)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence            45788999999887762 2257778889999999999999999999988764 236777888888999999999999999


Q ss_pred             HHHHhc--CCCChHHHHHH
Q 016973           94 EKGASL--APGDSRFTNLI  110 (379)
Q Consensus        94 ~~a~~l--~p~~~~~~~~l  110 (379)
                      .+..+.  .|+...+...+
T Consensus       164 ~~M~~~G~~Pd~~ty~~Li  182 (501)
T 4g26_A          164 AHMVESEVVPEEPELAALL  182 (501)
T ss_dssp             HHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHhcCCCCCHHHHHHHH
Confidence            987764  45555444433

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=90.71  E-value=0.78  Score=42.71  Aligned_cols=71  Identities=11%  Similarity=-0.012  Sum_probs=57.2

Q ss_pred             cCCeEEEEEEe-CCCCCCceEEEEeecEEEEEEEcCCCc-----------eeeeccccccccccCcceEEEeCcEEEEEE
Q 016973          186 KPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGEE-----------AYHFQPRLFGKIIPAKCRYEVLSTKVEIRL  253 (379)
Q Consensus       186 t~~~V~i~i~~-k~~~~~~v~v~~~~~~l~v~~~~~~~~-----------~~~~~~~L~~~I~p~~s~~~v~~~kiei~L  253 (379)
                      ++..+.|.+.+ +|+.+++|.|++..+.|+|+.......           .|.=.+.|-..|++++.+-+....-+.|+|
T Consensus       231 ~~~~~~v~~~ldPG~~~edi~V~v~~~~LtI~ge~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~~dGvL~i~~  310 (314)
T 2bol_A          231 GSKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEIVDGLMVVEA  310 (314)
T ss_dssp             SCEEEEEEEECCTTCCGGGEEEEESSSEEEEEEEEC------------CEEEEEEEECSSEECGGGCEEEEETTEEEEEE
T ss_pred             CCcEEEEEEEcCCCCChHHeEEEEECCEEEEEEEEeccCCceEEEEEeeeEEEEEEECCCCcChHHeEEEEeCCEEEEEE
Confidence            45578888888 999999999999999999987532111           255567888999999999999998999998


Q ss_pred             eec
Q 016973          254 AKA  256 (379)
Q Consensus       254 ~K~  256 (379)
                      -|.
T Consensus       311 Pk~  313 (314)
T 2bol_A          311 PLF  313 (314)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            874

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=90.62  E-value=1.9  Score=44.34  Aligned_cols=48  Identities=23%  Similarity=0.217  Sum_probs=35.2

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 016973           10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRA   62 (379)
Q Consensus        10 ~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~A   62 (379)
                      ..++..|++++|+++..     .-.+...|..+|..+.+.++++.|+.+|.++
T Consensus       660 ~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          660 ELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            34455566666666542     3356788899999999999999999988875

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=89.28  E-value=5.2  Score=41.06  Aligned_cols=26  Identities=15%  Similarity=0.235  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQA   28 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~a   28 (379)
                      ..|...|..+...++++.|+.+|.++
T Consensus       682 ~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          682 MKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            35678899999999999999999886

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=87.79  E-value=6.2  Score=37.81  Aligned_cols=78  Identities=13%  Similarity=0.065  Sum_probs=58.4

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC---CCChHHHHHH
Q 016973           40 ADRAQASIKLQNFTEAVADANRAIELEP------SMSKAYWRKATACMKLEEYETAKVALEKGASLA---PGDSRFTNLI  110 (379)
Q Consensus        40 ~~ra~~~~~lg~~~eAl~~~~~Al~l~p------~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~---p~~~~~~~~l  110 (379)
                      .++|..|+..|+|.+|+..+.+.+.-..      ...+++..-..+|..++++..+..+|.+|....   +.++.....+
T Consensus       103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i  182 (394)
T 3txn_A          103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL  182 (394)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence            3789999999999999999998887532      235677888889999999999999999887653   3455554444


Q ss_pred             HHHHHHH
Q 016973          111 KECEERI  117 (379)
Q Consensus       111 ~~~~~~l  117 (379)
                      ..|...+
T Consensus       183 ~~~~Gi~  189 (394)
T 3txn_A          183 DLQSGIL  189 (394)
T ss_dssp             HHHHHHH
T ss_pred             HHHhhHH
Confidence            4444333

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.72  E-value=0.83  Score=45.43  Aligned_cols=67  Identities=15%  Similarity=0.077  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCh
Q 016973           36 AELFADRAQASIKLQNFTEAVADANRAIELEPS-------MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (379)
Q Consensus        36 ~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~-------~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~  104 (379)
                      ..++..+-..|+..+.|+.|.....++.  .|.       ....+|.+|.++.-.++|.+|..+|..|++..|.+.
T Consensus       231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~  304 (523)
T 4b4t_S          231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS  304 (523)
T ss_dssp             HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence            4566677778889999999999999985  332       256788899999999999999999999999988654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=87.60  E-value=32  Score=37.20  Aligned_cols=96  Identities=14%  Similarity=0.006  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEI----SPNSAELFADRAQASIKLQNFTEAVADANRAIELEP-SMSKAYWRKATA   79 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~----~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p-~~~~a~~~la~~   79 (379)
                      +...-+.+.+.|+.++|..+|.+.-..    -.-+...|.-+-..|.+.|++++|++.|.......- -+...|..+-.+
T Consensus       130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~g  209 (1134)
T 3spa_A          130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC  209 (1134)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            455567899999999999999765432    233577888899999999999999999999987652 366677777778


Q ss_pred             HHhccCH-HHHHHHHHHHHhcC
Q 016973           80 CMKLEEY-ETAKVALEKGASLA  100 (379)
Q Consensus        80 ~~~lg~y-~~A~~~~~~a~~l~  100 (379)
                      +.+.|+. ++|...|++.....
T Consensus       210 lcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          210 MGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHhCCCcHHHHHHHHHHHHHcC
Confidence            8999984 78888998877654

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=86.23  E-value=2.9  Score=30.65  Aligned_cols=30  Identities=30%  Similarity=0.226  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI   31 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~   31 (379)
                      |-.+..+|..+-..|+|++|+.+|.++|+.
T Consensus        19 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~   48 (83)
T 2w2u_A           19 ARKYAINAVKADKEGNAEEAITNYKKAIEV   48 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            345666777777777777777777776664

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=85.99  E-value=3.1  Score=30.45  Aligned_cols=29  Identities=28%  Similarity=0.213  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI   31 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~   31 (379)
                      -.+..+|..+-+.|+|++|+.+|.++|+.
T Consensus        12 i~lv~~Ave~D~~g~y~eAl~lY~~aie~   40 (83)
T 2v6y_A           12 RKYAILAVKADKEGKVEDAITYYKKAIEV   40 (83)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            34566666667777777777777666654

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=81.41  E-value=6.4  Score=36.51  Aligned_cols=102  Identities=14%  Similarity=0.072  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C----HHH--HHHHHHHHHHccCHHHHH-----HHHHHHHHh----
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN----S----AEL--FADRAQASIKLQNFTEAV-----ADANRAIEL----   65 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~----~----~~~--~~~ra~~~~~lg~~~eAl-----~~~~~Al~l----   65 (379)
                      .+..|..++..|++++|+..|..+|..-+-    +    .++  +...+.-|.--=..+.+.     .+..+.+++    
T Consensus       117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYF  196 (325)
T 3mv2_A          117 KMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYF  196 (325)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHG
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence            467899999999999999999999987431    1    111  111111111100001100     112233333    


Q ss_pred             -----CCCCHHHHHHHHH-HHHhccCHHHHHHHHHHHHhcCCCChHH
Q 016973           66 -----EPSMSKAYWRKAT-ACMKLEEYETAKVALEKGASLAPGDSRF  106 (379)
Q Consensus        66 -----~p~~~~a~~~la~-~~~~lg~y~~A~~~~~~a~~l~p~~~~~  106 (379)
                           .|.....-+|.|. ..++.++|..|..+.++.+++.|....+
T Consensus       197 T~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a  243 (325)
T 3mv2_A          197 TKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRA  243 (325)
T ss_dssp             GGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHH
T ss_pred             ccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHH
Confidence                 2222333344455 4588999999999999999999975543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=80.83  E-value=5.5  Score=33.67  Aligned_cols=57  Identities=16%  Similarity=0.180  Sum_probs=45.6

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973           35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL   99 (379)
Q Consensus        35 ~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l   99 (379)
                      ++...+.+|   +++|+++.|.+.+...     ++...|-++|......|+++-|..+|+++-.+
T Consensus         7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~   63 (177)
T 3mkq_B            7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF   63 (177)
T ss_dssp             CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH
T ss_pred             ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH
Confidence            344444443   5789999999987765     67899999999999999999999999976443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	379
d1wh0a_	134	b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolas	2e-23
d1rl1a_	92	b.15.1.3 (A:) Suppressor of G2 allele of skp1 homo	5e-23
d1ejfa_	110	b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapien	8e-12
d1wgva_	124	b.15.1.4 (A:) NudC domain containing protein 3, NU	1e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-05
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	3e-09
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	6e-04
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-07
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-05
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	1e-05
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	0.001
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	4e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.002
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-04
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	3e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.001
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.002
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.002

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 134

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.3 bits (229), Expect = 2e-23
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 13/99 (13%)

Query: 181 HEFYQK-PEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP------------GEEAYHF 227
           ++ Y+K P+ VVV V+ K I      V F EQ  ++                     + +
Sbjct: 22  NDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRW 81

Query: 228 QPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEF 266
           Q +L   I P +C +   +++++I L K +  +W  LE 
Sbjct: 82  QVKLRNLIEPEQCTFCFTASRIDICLRKRQSQRWGGLEA 120

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.0 bits (223), Expect = 5e-23
 Identities = 32/85 (37%), Positives = 53/85 (62%)

Query: 181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKC 240
           +++YQ   +VV+T+  K +   +V V+F E+ LS  + +P  E Y+ +  L   IIP + 
Sbjct: 5   YDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQS 64

Query: 241 RYEVLSTKVEIRLAKAEPIQWSSLE 265
            ++VLSTK+EI+L K E ++W  LE
Sbjct: 65  TFKVLSTKIEIKLKKPEAVRWEKLE 89

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (143), Expect = 8e-12
 Identities = 16/119 (13%), Positives = 33/119 (27%), Gaps = 23/119 (19%)

Query: 184 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYE 243
           Y + + V +    +     NV  +  +   S        + +  +  LF  I P   +++
Sbjct: 9   YDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFK-HLNEIDLFHCIDPNDSKHK 67

Query: 244 VLSTKVEIRLAKAEP-IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDK 301
                +   L K E    W  L                     +  +       VD++ 
Sbjct: 68  RTDRSILCCLRKGESGQSWPRL----------------TKERAKLNW-----LSVDFNN 105

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (135), Expect = 1e-10
 Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 181 HEFYQKPEEVVVTV--FAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPA 238
           + + Q   ++ V V      +  K V+V      + V++     E    + +L  KI   
Sbjct: 22  YTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTE 81

Query: 239 KCRYEVLSTKVEI-RLAKAEPIQWSSL 264
              + +   K  +  L+K     W+++
Sbjct: 82  SSLWSLEPGKCVLVNLSKVGEYWWNAI 108

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 1e-09
 Identities = 16/67 (23%), Positives = 29/67 (43%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A  LY +A+E+ P  A   ++ A    +     EA+     AI + P+ + AY    
Sbjct: 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380

Query: 78  TACMKLE 84
               +++
Sbjct: 381 NTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 1e-09
 Identities = 11/75 (14%), Positives = 25/75 (33%)

Query: 7  KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE 66
          + A   +    FE A     Q     P++  +    +    + +    +   +  AI+  
Sbjct: 4  ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 67 PSMSKAYWRKATACM 81
          P +++AY        
Sbjct: 64 PLLAEAYSNLGNVYK 78

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 2e-08
 Identities = 18/104 (17%), Positives = 34/104 (32%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
            A                 LA   + +A+ + PN  + + +      + + F  AVA   
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
           RA+ L P+ +  +   A    +    + A     +   L P   
Sbjct: 228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP 271

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 2e-08
 Identities = 18/84 (21%), Positives = 39/84 (46%)

Query: 21  AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80
           A D Y+ A+ + P  A+   + A    +  N  EAV    +A+E+ P  + A+   A+  
Sbjct: 290 AEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349

Query: 81  MKLEEYETAKVALEKGASLAPGDS 104
            +  + + A +  ++   ++P  +
Sbjct: 350 QQQGKLQEALMHYKEAIRISPTFA 373

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 3e-07
 Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 2/126 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F+ A   Y +A+ +SPN A +  + A    +      A+    RAIEL+P    AY   A
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA--EETGELQKQPLETGPTN 135
            A  +      A+        L P  +   N +   +      EE   L ++ LE  P  
Sbjct: 279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338

Query: 136 VVSTNN 141
             + +N
Sbjct: 339 AAAHSN 344

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 6/65 (9%), Positives = 17/65 (26%)

Query: 41  DRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100
           + A    +  +F  A     +    EP  +      ++   +    + +           
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 101 PGDSR 105
           P  + 
Sbjct: 64  PLLAE 68

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.2 bits (129), Expect = 3e-09
 Identities = 29/100 (29%), Positives = 53/100 (53%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +L+++    F+   +  A   Y +AI  +P  A  + +RA   +K+Q   +A+AD  R
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101
           A+EL+    KA++      +++E Y+ A   L++  SLA 
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (88), Expect = 6e-04
 Identities = 10/107 (9%), Positives = 30/107 (28%), Gaps = 5/107 (4%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A     +A  ++      F D   +++++            +IE      ++     
Sbjct: 88  YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW-----NSIEERRIHQESELHSY 142

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGEL 124
              +   E E      ++       D          E +  +   ++
Sbjct: 143 LTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADM 189

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 16/93 (17%), Positives = 30/93 (32%)

Query: 9   AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS 68
            K A  +   + A +L  +AI+ SP  A L +   +      +F  A     ++I+L P 
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62

Query: 69  MSKAYWRKATACMKLEEYETAKVALEKGASLAP 101
                 +        +  +           L  
Sbjct: 63  YLPGASQLRHLVKAAQARKDFAQGAATAKVLGE 95

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 17/135 (12%), Positives = 41/135 (30%), Gaps = 7/135 (5%)

Query: 42  RAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101
           + + ++      +A+     AI+  P  +              ++E A   L +   L P
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61

Query: 102 GDSRFT----NLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETV 157
                     +L+K  + R     G    + L           ++        ++D E V
Sbjct: 62  EYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELT---KSLVSFNLSMVSQDYEQV 118

Query: 158 MDVSNEAAMAAPARP 172
            +++ +       + 
Sbjct: 119 SELALQIEELRQEKG 133

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 1/95 (1%)

Query: 15  DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAY 73
           D+  E A+ L   AIE++  +  ++  R      LQ +  E +      IE +P   + +
Sbjct: 56  DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 115

Query: 74  WRKATACMKLEEYETAKVALEKGASLAPGDSRFTN 108
             +      L +       +    +    +     
Sbjct: 116 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQ 150

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 8/69 (11%), Positives = 19/69 (27%), Gaps = 1/69 (1%)

Query: 28  AIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE-Y 86
            I  S    +++        + +    A      AIEL  +    +  +      L++  
Sbjct: 35  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94

Query: 87  ETAKVALEK 95
                 +  
Sbjct: 95  HEEMNYITA 103

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.1 bits (100), Expect = 4e-05
 Identities = 10/83 (12%), Positives = 23/83 (27%), Gaps = 1/83 (1%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
               E   +++ +      +     +    +           +A   L    E +   + 
Sbjct: 242 LFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST 301

Query: 62  AIELEPSMSKAYWRKATACMKLE 84
              ++P M  AY     +   LE
Sbjct: 302 LKAVDP-MRAAYLDDLRSKFLLE 323

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 16/108 (14%), Positives = 32/108 (29%)

Query: 7   KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE 66
           ++      +     A  L+  A++  P   E +        + +    A++   R +EL+
Sbjct: 24  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83

Query: 67  PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114
           P    A    A +         A   L       P  +      +E  
Sbjct: 84  PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA 131

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 11/90 (12%)

Query: 17  YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76
             E A   Y +A+E+ P       +   + I L    EAV     A+ ++          
Sbjct: 221 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 280

Query: 77  AT-----------ACMKLEEYETAKVALEK 95
                        A   L + +    A  +
Sbjct: 281 GAMSENIWSTLRLALSMLGQSDAYGAADAR 310

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 40.7 bits (93), Expect = 2e-04
 Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 5/95 (5%)

Query: 27  QAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP-----SMSKAYWRKATACM 81
           + I      AE  A RAQ +I   N  EA   A  A+E  P     S   A         
Sbjct: 3   KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62

Query: 82  KLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116
              E   +   +++   +A     +   +    ++
Sbjct: 63  CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 53  TEAVADANRAIEL-------EPSMSK-AYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
           +  V D    +++         S  +   +     C KL EY  AK  ++        + 
Sbjct: 48  STDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 107

Query: 105 RFTNLIKECEERIAEET 121
           +   L    E++I +ET
Sbjct: 108 QVGALKSMVEDKIQKET 124

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 0.001
 Identities = 11/72 (15%), Positives = 23/72 (31%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A   Y  A ++ P++ + +   A  +    +    +    R+I ++     A     
Sbjct: 168 TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ 227

Query: 78  TACMKLEEYETA 89
            A  K  E    
Sbjct: 228 KALSKALESRDE 239

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 0.002
 Identities = 12/109 (11%), Positives = 30/109 (27%), Gaps = 9/109 (8%)

Query: 4   DLEKKAKEAFIDDYFELAYDLYSQAIE-------ISPNSAELFADRAQASIKLQNFTEAV 56
           +  +   +A +  + E A   Y+Q ++       +        +     S K  + +  V
Sbjct: 81  NPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIV 140

Query: 57  ADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105
              + +                      +   A+      A L P + +
Sbjct: 141 KPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ 187

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 6/65 (9%), Positives = 17/65 (26%)

Query: 21  AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80
                +    ++ + +E      +  + L +   A A    A+         +       
Sbjct: 194 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLEL 253

Query: 81  MKLEE 85
             L +
Sbjct: 254 SLLGQ 258

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	379
d1rl1a_	92	Suppressor of G2 allele of skp1 homolog, gst1 {Hum	99.88
d1wh0a_	134	Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H	99.87
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.8
d1ejfa_	110	Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960	99.77
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.77
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.76
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.75
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.74
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.71
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.66
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.62
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.61
d1wgva_	124	NudC domain containing protein 3, NUDCD3 (KIAA1068	99.6
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.52
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.51
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.51
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.49
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.46
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.46
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.45
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.44
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.43
d1wfia_	131	Nuclear migration protein nudC {Mouse (Mus musculu	99.4
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.4
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.34
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.25
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.22
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.19
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.17
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.16
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.16
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.15
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.14
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.14
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.14
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.14
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.04
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.87
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.86
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.86
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.84
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.73
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.73
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.69
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.64
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.63
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.52
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.33
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.33
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.26
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.25
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.21
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.21
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.05
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.01
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.87
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.61
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.38
d1shsa_	115	Small heat shock protein {Archaeon Methanococcus j	97.35
d1gmea_	150	Small heat shock protein {Wheat (Triticum aestivum	97.18
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.06
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	86.03
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	84.82
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	81.3

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.2e-23  Score=160.79  Aligned_cols=87  Identities=37%  Similarity=0.688  Sum_probs=84.1

Q ss_pred             ccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecCCCC
Q 016973          181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQ  260 (379)
Q Consensus       181 ~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~  260 (379)
                      |+||||++.|+|+|+++|+.++++.|+|++++|+|.+...++..|.++++||++|+|++|+|++.+++|+|+|+|++++.
T Consensus         5 y~W~Qt~~~V~i~i~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~~~~~kiei~L~K~~~~~   84 (92)
T d1rl1a_           5 YDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLKKPEAVR   84 (92)
T ss_dssp             EEEEECSSEEEEEECCCSCCGGGEEEECSSSCEEEEEECTTSSEEEEEECBSSCCCGGGEEEEECSSSEEEEEECSSCCC
T ss_pred             eeEEeCCCEEEEEEEeCCCChHheEEEEecCEEEEEEEcCCCcEEEEEEEcCcccCchhcEEEEeCCEEEEEEEECCCCc
Confidence            99999999999999999999999999999999999998888889999999999999999999999999999999999999


Q ss_pred             CCccccC
Q 016973          261 WSSLEFS  267 (379)
Q Consensus       261 W~~L~~~  267 (379)
                      |++|++.
T Consensus        85 W~~L~~~   91 (92)
T d1rl1a_          85 WEKLEGQ   91 (92)
T ss_dssp             CSSSBTT
T ss_pred             CcCcccC
Confidence            9999975

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=8.9e-23  Score=166.95  Aligned_cols=94  Identities=24%  Similarity=0.429  Sum_probs=85.1

Q ss_pred             CcccccccccccccccC-CeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCC------------ceeeecccccccccc
Q 016973          171 RPKYRFQILMHEFYQKP-EEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGE------------EAYHFQPRLFGKIIP  237 (379)
Q Consensus       171 ~~~~~~~~~~~~W~Qt~-~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~------------~~~~~~~~L~~~I~p  237 (379)
                      .+.+|     |+|||+. +.|+|+||+||+.++++.|+|++++|+|.|+..+|            ..|.++++||++|+|
T Consensus        17 ~~~ir-----~dwyq~~~~~V~VtI~~K~v~ke~~~V~f~~~sl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~p   91 (134)
T d1wh0a_          17 LAFVK-----NDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEP   91 (134)
T ss_dssp             ESCCC-----EEEEEETTTEEEEEEECCSBCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEE
T ss_pred             ccccc-----cceeecCCCEEEEEEEeCCCchhheEEEEeCCEEEEEEECCCCcceeeccccCcCeeEEEeeecccccCh
Confidence            34778     9999995 78999999999999999999999999999986654            358888899999999


Q ss_pred             CcceEEEeCcEEEEEEeecCCCCCCccccCCC
Q 016973          238 AKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKG  269 (379)
Q Consensus       238 ~~s~~~v~~~kiei~L~K~~~~~W~~L~~~~~  269 (379)
                      ++|+|+|++++|||+|+|+++.+|++|+....
T Consensus        92 e~S~~~v~~~kiei~L~K~~~~~W~~Le~~~~  123 (134)
T d1wh0a_          92 EQCTFCFTASRIDICLRKRQSQRWGGLEAPAA  123 (134)
T ss_dssp             EEEEEEECSSEEEEEEEESSSCCCSCSBCCCS
T ss_pred             hHcEEEeCCCEEEEEEEeCCCCcCcCcccccc
Confidence            99999999999999999999999999997643

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6e-20  Score=147.35  Aligned_cols=114  Identities=26%  Similarity=0.440  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      ++.|..+|+.++..|+|++|+.+|+++|..+|+++.+|+++|.||.++|++++|+.+|.+++.++|.++.+|+++|.++.
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~   82 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   82 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEE  115 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  115 (379)
                      .+|+|++|+.+|+++++++|+++.+...+.+++.
T Consensus        83 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          83 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            9999999999999999999999999999988865

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1e-18  Score=147.35  Aligned_cols=118  Identities=31%  Similarity=0.499  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      |+.+..+|+.+|+.|+|++|+.+|+++|.++|++..+|+++|.||+.+|++++|+.+|.++++++|.+..+|+++|.+|+
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      .+|+|++|+.+|++++.++|++..+...+..|...++.
T Consensus        90 ~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  127 (159)
T d1a17a_          90 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ  127 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988888777665444

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.4e-19  Score=142.39  Aligned_cols=101  Identities=19%  Similarity=0.280  Sum_probs=86.0

Q ss_pred             ccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEc-CCCceeeeccccccccccCcceEEEeCcEEEEEEeecCC-
Q 016973          181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP-  258 (379)
Q Consensus       181 ~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~-~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~-  258 (379)
                      |.|+||.+.|+|+|+++++  .++.|+|+.+++.|++.. .+|..|.++++||++|+|++|+++|.+++|+|+|.|+++ 
T Consensus         6 ~~W~Qt~~~V~i~I~v~~~--~~~~v~i~~~~l~~~~~~~~~~~~y~l~~~L~~~I~~~~s~~~v~~~kiei~L~K~~~~   83 (110)
T d1ejfa_           6 AKWYDRRDYVFIEFCVEDS--KDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKGESG   83 (110)
T ss_dssp             EEEEECSSEEEEEECCTTE--EEEEEEEETTEEEEEEEETTTTEEEEEEEEBSSCEEEEEEEEEECSSCEEEEEEESSTT
T ss_pred             cEEEECCCEEEEEEEeCCC--CCceEEEEeceEEEEEEecCCCceEEEEEEcccCcccCccEEEEeCCEEEEEEEEcCCC
Confidence            6699999999999999975  588999999999998864 456689999999999999999999999999999999986 


Q ss_pred             CCCCccccCCCccCCCccCCCCCCCCCCCCCCCCCCCCCCchhHHH
Q 016973          259 IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEA  304 (379)
Q Consensus       259 ~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~  304 (379)
                      ..|++|+....                ++.+-     ++|||||.+
T Consensus        84 ~~W~~L~~~~~----------------K~~~~-----kvD~dkw~d  108 (110)
T d1ejfa_          84 QSWPRLTKERA----------------KLNWL-----SVDFNNWKD  108 (110)
T ss_dssp             CCCSSSBSSCC----------------CCTTE-----EECTTTCCC
T ss_pred             CCCCceecCCC----------------CcCcE-----EccchheEc
Confidence            67999997632                22222     679999983

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.77  E-value=7.1e-18  Score=141.52  Aligned_cols=119  Identities=23%  Similarity=0.307  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------------AELFADRAQASIKLQNFTEAVADANRAIEL   65 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~----------------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l   65 (379)
                      |..+...|+.+|..|+|.+|+..|++||...+..                ..++.++|.||+++|++++|+.+|.+|+.+
T Consensus        17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~   96 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI   96 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc
Confidence            4568889999999999999999999999986543                347889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        66 ~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +|.+..+|+++|.+|+.+|+|++|+.+|+++++++|++..+...+..+..+++..
T Consensus        97 ~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~  151 (153)
T d2fbna1          97 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA  151 (153)
T ss_dssp             STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999888765

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.1e-17  Score=142.86  Aligned_cols=119  Identities=21%  Similarity=0.360  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRAIELE   66 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---------------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~   66 (379)
                      |..+...|+.+|..|+|++|+.+|+++|...+..               ..++.++|.||+++|+|++|+.++.+++.++
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            5677899999999999999999999999997754               4567889999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           67 PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        67 p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      |++..+++++|.+|+.+|+|++|+.+|+++++++|+++.+...+..+...+...
T Consensus        93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  146 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ  146 (170)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998877665

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=1.6e-18  Score=150.18  Aligned_cols=103  Identities=28%  Similarity=0.411  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      |+.|..+|+.+|..|+|++|+..|++||.++|.++.+|+++|.||.++|+|++|+.+|.+|+.++|+++.+|+++|.+|+
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCCh
Q 016973           82 KLEEYETAKVALEKGASLAPGDS  104 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~  104 (379)
                      .+|+|++|+.+|++++.++|++.
T Consensus        84 ~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          84 EMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHHHHHHhCcccH
Confidence            99999999999999999988544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.74  E-value=3.2e-17  Score=139.48  Aligned_cols=119  Identities=23%  Similarity=0.321  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRAIELE   66 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---------------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~   66 (379)
                      |..+...|+.+|..|+|.+|+.+|++||...+..               ..+|.++|.||+++|+|.+|+.++++++.++
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            5678899999999999999999999999875443               4568899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           67 PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        67 p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      |.+..+++++|.+|..+|+|++|+.+|.+++.++|++..+...+..+...+...
T Consensus        95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  148 (168)
T d1kt1a1          95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH  148 (168)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence            999999999999999999999999999999999999999999999888877654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=6.2e-17  Score=137.62  Aligned_cols=119  Identities=24%  Similarity=0.433  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI----------------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL   65 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~----------------~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l   65 (379)
                      +..+...|+.++..|+|.+|+..|+++|..                +|....++.+||.||+++|+|++|+.+|.+|+++
T Consensus        27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  106 (169)
T d1ihga1          27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  106 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh
Confidence            456788999999999999999999999875                3455778999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        66 ~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      +|.++.+|+++|.+|+.+|+|++|+.+|+++++++|++..+...+..|...+...
T Consensus       107 ~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~  161 (169)
T d1ihga1         107 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ  161 (169)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998888775

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.6e-16  Score=128.96  Aligned_cols=117  Identities=20%  Similarity=0.275  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-------SKAYW   74 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~-------~~a~~   74 (379)
                      |..+.+.|+.+|..|+|++|+.+|+++|.++|+++.++.++|.||+++|+|++|+.+|.+|+.++|.+       ..+|+
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999998865       45788


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           75 RKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        75 ~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      ++|.++..+++|++|+.+|.+++..+++ +.....+..+...++.
T Consensus        84 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~lke  127 (128)
T d1elra_          84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILKE  127 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhC
Confidence            8999999999999999999999999875 5666777777666654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=8.9e-16  Score=137.46  Aligned_cols=118  Identities=21%  Similarity=0.136  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      |..++.+|.+++..|+|++|+..|+++|.++|+++.+|+++|.||.++|++++|+.+|.+++.++|.++.+++++|.+|+
T Consensus        37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~  116 (259)
T d1xnfa_          37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  116 (259)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      .+|++++|+..|+++++++|++.....++..+...+..
T Consensus       117 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  154 (259)
T d1xnfa_         117 YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE  154 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCH
T ss_pred             HHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhh
Confidence            99999999999999999999998877777666555443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.2e-15  Score=122.94  Aligned_cols=115  Identities=10%  Similarity=0.067  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL---QNFTEAVADANRAIELEPSM--SKAYWRKATA   79 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~l---g~~~eAl~~~~~Al~l~p~~--~~a~~~la~~   79 (379)
                      +-..++.++..+++++|.+.|.++|.++|.++.+++++|.|+++.   +++++|+..|++++..+|..  ..+++.+|.+
T Consensus         2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            346788999999999999999999999999999999999999874   45668999999999998765  4599999999


Q ss_pred             HHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        80 ~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      |+++|+|++|+.+|+++++++|++..+...+..+..++..
T Consensus        82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~k  121 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  121 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999988887764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.61  E-value=4e-15  Score=117.72  Aligned_cols=94  Identities=12%  Similarity=0.005  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      ..+..|..++..|++.+|+..|++++..+|+++.+|+.+|.|+.++|++++|+.+|.+|+.++|.+..+++.+|.+|..+
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHH
Q 016973           84 EEYETAKVALEKGA   97 (379)
Q Consensus        84 g~y~~A~~~~~~a~   97 (379)
                      |++++|+.+|++.+
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999875

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.2e-15  Score=120.70  Aligned_cols=89  Identities=17%  Similarity=0.192  Sum_probs=76.9

Q ss_pred             ccccccCCeEEEEEEeCC--CCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEE-EeecC
Q 016973          181 HEFYQKPEEVVVTVFAKG--IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIR-LAKAE  257 (379)
Q Consensus       181 ~~W~Qt~~~V~i~i~~k~--~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~-L~K~~  257 (379)
                      |.|+||.+.|+|+|.++.  +..++|.|+|+.++|.|.+...++..|.+..+||++|+|+.|+|+|.+.+++|. |+|..
T Consensus        22 Y~W~Qt~~~V~i~i~lp~~~~k~kdv~v~~~~~~l~v~v~~~~~~~~~l~g~L~~~I~~deS~w~i~~~~~~i~~lkK~~  101 (124)
T d1wgva_          22 YTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKCVLVNLSKVG  101 (124)
T ss_dssp             CEEEEETTEEEEEEECCTTCCSGGGEEEEECSSEEEEEEECSSSEEEEEEEEBSSCBCTTTCEEEECTTSEEEEEECBSS
T ss_pred             eEEEeECCEEEEEEEeCCCCcchhhEEEEEEeCEEEEEEeccCCcceEEeCcccCcccccccEEEEeCCCEEEEEEEecC
Confidence            889999999999998863  445899999999999999988778889999999999999999999999877665 55556


Q ss_pred             CCCCCccccCCC
Q 016973          258 PIQWSSLEFSKG  269 (379)
Q Consensus       258 ~~~W~~L~~~~~  269 (379)
                      ...|++|...+.
T Consensus       102 ~~~W~~L~~ge~  113 (124)
T d1wgva_         102 EYWWNAILEGEE  113 (124)
T ss_dssp             SCCCSCSBTTSC
T ss_pred             CCcChhhccCCc
Confidence            688999986643

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=6.4e-14  Score=121.41  Aligned_cols=98  Identities=19%  Similarity=0.216  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      -.++++|..++..|+|+.|++.|.++   .+.++.+++++|.||+.+|+|++|+.+|.+|++++|+++.+|+++|.+|++
T Consensus         6 ~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~   82 (192)
T d1hh8a_           6 ISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   82 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh
Confidence            46789999999999999999999874   566789999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCC
Q 016973           83 LEEYETAKVALEKGASLAPGD  103 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~  103 (379)
                      +|+|++|+..|++++...+.+
T Consensus        83 ~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          83 TEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTC
T ss_pred             hccHHHHHHHHHHHHHhCccC
Confidence            999999999999999876654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.51  E-value=5.4e-14  Score=116.44  Aligned_cols=111  Identities=14%  Similarity=0.184  Sum_probs=100.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 016973           10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL----------QNFTEAVADANRAIELEPSMSKAYWRKATA   79 (379)
Q Consensus        10 ~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~l----------g~~~eAl~~~~~Al~l~p~~~~a~~~la~~   79 (379)
                      ..+-+.+.|++|+..|++++.++|+++.+++++|.++..+          +.+++|+..|++|++++|+++.+|+++|.+
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA   84 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHH
Confidence            3456778899999999999999999999999999999865          556899999999999999999999999999


Q ss_pred             HHhccC-----------HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           80 CMKLEE-----------YETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        80 ~~~lg~-----------y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      |..+|+           |.+|+.+|++++.++|++..+...+..+...++..
T Consensus        85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~  136 (145)
T d1zu2a1          85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLH  136 (145)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHH
T ss_pred             HHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHH
Confidence            998764           79999999999999999999999998887776554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.9e-13  Score=118.34  Aligned_cols=103  Identities=15%  Similarity=0.087  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------------
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM------------   69 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~------------   69 (379)
                      +..++++|.+++..|+|++|+..|++||+++|+++.+|++||.||.++|+|++|+.+|++|+...+.+            
T Consensus        36 ~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~  115 (192)
T d1hh8a_          36 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF  115 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCC
T ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhc
Confidence            45789999999999999999999999999999999999999999999999999999999999875532            


Q ss_pred             ----HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCh
Q 016973           70 ----SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (379)
Q Consensus        70 ----~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~  104 (379)
                          ..+++++|.++..+|++++|+..|.+++.+.|...
T Consensus       116 ~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~  154 (192)
T d1hh8a_         116 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  154 (192)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcc
Confidence                57899999999999999999999999999998754

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.3e-13  Score=128.58  Aligned_cols=119  Identities=13%  Similarity=0.017  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSKAYWRKATAC   80 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~-~~eAl~~~~~Al~l~p~~~~a~~~la~~~   80 (379)
                      ++.+...|.++.+.+.+++|+.+|++||+++|.+..+|.+||.|+..+|+ +++|+.++.+++.++|.+..+|+++|.++
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence            35666789999999999999999999999999999999999999999875 99999999999999999999999999999


Q ss_pred             HhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      ..+|++++|+.+|.++++++|++..++..++.+...++..
T Consensus       123 ~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~  162 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW  162 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred             HhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999998888765

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.3e-13  Score=125.44  Aligned_cols=104  Identities=17%  Similarity=0.200  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..+...|..++..|++++|+..|++++..+|+++.+++.+|.+|..+|++++|+..|.++++++|+++.+|+.+|.+|+.
T Consensus       173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  252 (323)
T d1fcha_         173 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN  252 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHH
Q 016973           83 LEEYETAKVALEKGASLAPGDSRF  106 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~  106 (379)
                      +|+|++|+..|++|++++|++...
T Consensus       253 ~g~~~~A~~~~~~al~l~p~~~~~  276 (323)
T d1fcha_         253 LGAHREAVEHFLEALNMQRKSRGP  276 (323)
T ss_dssp             HTCHHHHHHHHHHHHHHHHTC---
T ss_pred             CCCHHHHHHHHHHHHHhCCcChhh
Confidence            999999999999999999987653

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.7e-13  Score=125.87  Aligned_cols=112  Identities=17%  Similarity=0.147  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg   84 (379)
                      +...|..++..|++.+|+..|.+++...|.+...+..+|.++..+|++++|+..|.+++.++|+++.+++.+|.+|..+|
T Consensus       274 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  353 (388)
T d1w3ba_         274 YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG  353 (388)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            34444444444444444444444444444444555555555555555555555555555555555555555555555555


Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973           85 EYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (379)
Q Consensus        85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (379)
                      ++++|+.+|+++++++|++..+...++.+..+
T Consensus       354 ~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~  385 (388)
T d1w3ba_         354 KLQEALMHYKEAIRISPTFADAYSNMGNTLKE  385 (388)
T ss_dssp             CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            55555555555555555555555555554433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.45  E-value=6.9e-14  Score=116.90  Aligned_cols=101  Identities=22%  Similarity=0.155  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------------AELFADRAQASIKLQNFTEAVADANRAIELEPS--   68 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~--   68 (379)
                      ..++..|+.++..|+|++|+..|+++|++.|+.            ..+|.++|.||.++|+|++|+.++.+++.+.+.  
T Consensus        10 ~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~   89 (156)
T d2hr2a1          10 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   89 (156)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccc
Confidence            345667999999999999999999999997764            467899999999999999999999999988542  


Q ss_pred             ---------CHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC
Q 016973           69 ---------MSKAYWRKATACMKLEEYETAKVALEKGASLAPGD  103 (379)
Q Consensus        69 ---------~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~  103 (379)
                               ...+++++|.+|..+|++++|+.+|++++++.|..
T Consensus        90 ~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          90 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence                     35589999999999999999999999999996643

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3e-13  Score=126.10  Aligned_cols=116  Identities=7%  Similarity=-0.034  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDD-YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (379)
Q Consensus         2 A~~l~~~g~~~~~~g-~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~   80 (379)
                      ...+..+|.++...| ++++|+..|+++|..+|++..+|.+||.++..+|++++|+.++.+++.++|.+..+|+.+|.++
T Consensus        77 ~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~  156 (315)
T d2h6fa1          77 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVI  156 (315)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHH
Confidence            467899999999876 5999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (379)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l  117 (379)
                      ..+|+|++|+.+|.++++++|++..++..++.+...+
T Consensus       157 ~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~  193 (315)
T d2h6fa1         157 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT  193 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHc
Confidence            9999999999999999999999999888877765443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=8e-13  Score=122.56  Aligned_cols=112  Identities=13%  Similarity=0.062  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg   84 (379)
                      ++..|+.+++.|+|++|+..|+++++.+|+++.+++.+|.+|+++|++++|+..|.++++++|.++.+++++|.+|..+|
T Consensus         2 ll~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g   81 (388)
T d1w3ba_           2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             CCTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhc
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973           85 EYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (379)
Q Consensus        85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (379)
                      ++++|+..+..+...++...............
T Consensus        82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (388)
T d1w3ba_          82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVA  113 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccc
Confidence            99999999999999999988766655554443

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=6.2e-13  Score=107.86  Aligned_cols=86  Identities=19%  Similarity=0.251  Sum_probs=72.9

Q ss_pred             cccccccCCeEEEEEEeC---CCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCc-EEEEEEee
Q 016973          180 MHEFYQKPEEVVVTVFAK---GIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAK  255 (379)
Q Consensus       180 ~~~W~Qt~~~V~i~i~~k---~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~-kiei~L~K  255 (379)
                      +|.|.||.+.|.|+|.++   ++.+++|.|+|+.++|.|.+.   +....+..+||+.|+|+.|+|.|.+. .|+|.|.|
T Consensus         9 ~Y~W~Qt~~eV~I~V~~~~~~~~~~~di~v~i~~~~l~v~v~---~~~~ll~g~L~~~I~~des~W~ied~~~l~i~L~K   85 (131)
T d1wfia_           9 NYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLK---GQPPVVDGELYNEVKVEESSWLIEDGKVVTVHLEK   85 (131)
T ss_dssp             SSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEET---TSCCSBCSCBSSCBCSTTCEEEEETTTEEEEEEEB
T ss_pred             CeEEEeeCCEEEEEEEcCCCCCcchhhEEEEeeCCEEEEEEc---CCceeecccccCcccccccEEEEeCCCEEEEEEEE
Confidence            377999999999999764   578899999999999999886   23355667999999999999999865 68999999


Q ss_pred             cCC-CCCCccccCC
Q 016973          256 AEP-IQWSSLEFSK  268 (379)
Q Consensus       256 ~~~-~~W~~L~~~~  268 (379)
                      +.. ..|++|...+
T Consensus        86 ~~~~~~W~~l~~gd   99 (131)
T d1wfia_          86 INKMEWWNRLVTSD   99 (131)
T ss_dssp             SSSCCCCSCSBSSC
T ss_pred             CCCCccCHHHcCCC
Confidence            876 6799998654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.8e-12  Score=119.34  Aligned_cols=102  Identities=15%  Similarity=0.116  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      ..+.+|..++..|+|++|+.+|+++|+.+|+++.+|+.+|.||..+|++++|+.+|.+|+.++|.+..+++.+|.+|..+
T Consensus        21 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          21 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE  100 (323)
T ss_dssp             SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccc
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChH
Q 016973           84 EEYETAKVALEKGASLAPGDSR  105 (379)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~  105 (379)
                      |++++|+..|++++.++|....
T Consensus       101 ~~~~~A~~~~~~~~~~~~~~~~  122 (323)
T d1fcha_         101 SLQRQACEILRDWLRYTPAYAH  122 (323)
T ss_dssp             TCHHHHHHHHHHHHHTSTTTGG
T ss_pred             ccccccccchhhHHHhccchHH
Confidence            9999999999999999987654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4e-12  Score=97.05  Aligned_cols=83  Identities=14%  Similarity=0.093  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-------AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYW   74 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~-------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~   74 (379)
                      |+.++..|..+++.|+|.+|+..|++|+.+.|.+       ..++.++|.|++++|++++|+..++++++++|++..++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            6788999999999999999999999999885543       678889999999999999999999999999999999999


Q ss_pred             HHHHHHHhcc
Q 016973           75 RKATACMKLE   84 (379)
Q Consensus        75 ~la~~~~~lg   84 (379)
                      +++.+...++
T Consensus        85 Nl~~~~~~l~   94 (95)
T d1tjca_          85 NLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            8887665543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=2.6e-11  Score=107.68  Aligned_cols=106  Identities=14%  Similarity=0.047  Sum_probs=95.4

Q ss_pred             cCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHH
Q 016973           15 DDYFELAYDLYSQAIEISP----NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK   90 (379)
Q Consensus        15 ~g~y~~Al~~y~~al~~~p----~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~   90 (379)
                      ..+++.|+..+++++...+    ..+.+++++|.+|..+|++++|+.+|.+|+.++|+++.+|+++|.+|..+|++++|+
T Consensus        12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhh
Confidence            3467788889999987643    346799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           91 VALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        91 ~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      .+|+++++++|++..+...++.+...+++.
T Consensus        92 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~  121 (259)
T d1xnfa_          92 EAFDSVLELDPTYNYAHLNRGIALYYGGRD  121 (259)
T ss_dssp             HHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred             hhhhHHHHHHhhhhhhHHHHHHHHHHHhhH
Confidence            999999999999999888888887776654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.22  E-value=4.7e-11  Score=100.46  Aligned_cols=88  Identities=19%  Similarity=0.195  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..+.++|.++++.|+|++|+..|+++|+++|+++.+|+++|.+|..+|+|++|+.+|.+|++++|++..++..++.+...
T Consensus        78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~  157 (169)
T d1ihga1          78 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK  157 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccCHHHHH
Q 016973           83 LEEYETAK   90 (379)
Q Consensus        83 lg~y~~A~   90 (379)
                      +..+.++.
T Consensus       158 l~~~~~~~  165 (169)
T d1ihga1         158 IKAQKDKE  165 (169)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88777654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.19  E-value=1.4e-10  Score=97.62  Aligned_cols=85  Identities=15%  Similarity=0.159  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      .+.++|.+++..|+|.+|+..|+++|.++|++..+++++|.||..+|+|++|+.+|.+++.++|++..++..++.+...+
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             cCHHH
Q 016973           84 EEYET   88 (379)
Q Consensus        84 g~y~~   88 (379)
                      +.+.+
T Consensus       146 ~~~~e  150 (168)
T d1kt1a1         146 KEHNE  150 (168)
T ss_dssp             HHHHH
T ss_pred             HhHHH
Confidence            77754

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2e-10  Score=96.78  Aligned_cols=87  Identities=18%  Similarity=0.204  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      .+.+.|.++++.|+|++|+..|+++|.++|+++.+++++|.||+.+|+|++|+.+|.+++.++|++..+...++.++..+
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  143 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI  143 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             cCHHHHH
Q 016973           84 EEYETAK   90 (379)
Q Consensus        84 g~y~~A~   90 (379)
                      +++....
T Consensus       144 ~~~~~~e  150 (170)
T d1p5qa1         144 RRQLARE  150 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.2e-10  Score=88.54  Aligned_cols=83  Identities=14%  Similarity=0.035  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHH
Q 016973           36 AELFADRAQASIKLQNFTEAVADANRAIELEPS-------MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN  108 (379)
Q Consensus        36 ~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~-------~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~  108 (379)
                      ++-.+.+|.++++.|+|.+|+..|++|+.+.|.       ...++..+|.+++++|+|++|+.+|+++++++|+++.+..
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            455789999999999999999999999998653       3789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 016973          109 LIKECEERIA  118 (379)
Q Consensus       109 ~l~~~~~~l~  118 (379)
                      .+..++..|.
T Consensus        85 Nl~~~~~~l~   94 (95)
T d1tjca_          85 NLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            9988887765

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.16  E-value=5.6e-10  Score=95.07  Aligned_cols=100  Identities=17%  Similarity=0.092  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHccCHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------------------AELFADRAQASIKLQNFTEAVADAN   60 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~----------------------~~~~~~ra~~~~~lg~~~eAl~~~~   60 (379)
                      +.++..|..++..|++++|+..|.+||.+.+..                      ..++.+++.++..+|++++|+.++.
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~   91 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE   91 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            467889999999999999999999999996644                      3578899999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHH-------HhcCCC
Q 016973           61 RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKG-------ASLAPG  102 (379)
Q Consensus        61 ~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a-------~~l~p~  102 (379)
                      +++.++|.+..+|.+++.+|..+|++.+|+..|+++       +.+.|.
T Consensus        92 ~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          92 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            999999999999999999999999999999999998       445665

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=2.5e-10  Score=94.75  Aligned_cols=91  Identities=16%  Similarity=0.217  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +..+...|.+++..|++++|+..|.++|+++|++..+|+++|.|+..+|++++|+.++.+++.++|++..++..++.+..
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~  123 (159)
T d1a17a_          44 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK  123 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999988887754


Q ss_pred             h--ccCHHHHHHH
Q 016973           82 K--LEEYETAKVA   92 (379)
Q Consensus        82 ~--lg~y~~A~~~   92 (379)
                      .  .+.+++|+..
T Consensus       124 ~~~~~~~~~a~~~  136 (159)
T d1a17a_         124 IVKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC
Confidence            3  3445555543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.14  E-value=1.9e-10  Score=90.13  Aligned_cols=84  Identities=18%  Similarity=0.160  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973           38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (379)
Q Consensus        38 ~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l  117 (379)
                      ..+.+|.++++.|++.+|+..|++++.++|+++.+|+.+|.++.++|++++|+.+|+++++++|++..+...++.+...+
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             Hhhh
Q 016973          118 AEET  121 (379)
Q Consensus       118 ~~~~  121 (379)
                      +...
T Consensus        98 g~~~  101 (112)
T d1hxia_          98 HNAN  101 (112)
T ss_dssp             HHHH
T ss_pred             CCHH
Confidence            8763

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.8e-10  Score=90.99  Aligned_cols=80  Identities=13%  Similarity=0.116  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~   81 (379)
                      +..+...|.+++..|+|++|+..|.+++.++|+++.+|+++|.|+..+|++++|+.+|.+++.++|+++.++..++.+..
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          37 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             hhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            45688899999999999999999999999999999999999999999999999999999999999999999999887653

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.14  E-value=1.7e-10  Score=95.56  Aligned_cols=82  Identities=18%  Similarity=0.092  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      .+.++|.++++.|+|++|+..|+++|.++|.+..+|+++|.||..+|++++|+.+|.+++.++|++..+...++.+..++
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999887766


Q ss_pred             cC
Q 016973           84 EE   85 (379)
Q Consensus        84 g~   85 (379)
                      ++
T Consensus       149 ~~  150 (153)
T d2fbna1         149 KE  150 (153)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=1.5e-10  Score=98.84  Aligned_cols=86  Identities=19%  Similarity=0.249  Sum_probs=81.4

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 016973           35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (379)
Q Consensus        35 ~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (379)
                      ++..+...|.+|++.|+|++|+..|.+|+.++|.++.+|+.+|.||..+|+|++|+.+|++|+.++|++...+..++.+.
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            46678899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHhh
Q 016973          115 ERIAEE  120 (379)
Q Consensus       115 ~~l~~~  120 (379)
                      ..++..
T Consensus        83 ~~l~~~   88 (201)
T d2c2la1          83 LEMESY   88 (201)
T ss_dssp             HHTTCH
T ss_pred             HHCCCH
Confidence            887775

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.7e-10  Score=90.57  Aligned_cols=84  Identities=17%  Similarity=0.202  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973           37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (379)
Q Consensus        37 ~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (379)
                      ..+..+|.+++..|+|++|+.+|.+++.++|.++.+++++|.+|+.+|+|++|+.+|.+++.++|++......++.+...
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999888766666666665


Q ss_pred             HHhh
Q 016973          117 IAEE  120 (379)
Q Consensus       117 l~~~  120 (379)
                      ++..
T Consensus        85 lg~~   88 (128)
T d1elra_          85 IGNS   88 (128)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.87  E-value=4.3e-09  Score=86.17  Aligned_cols=88  Identities=15%  Similarity=0.075  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-----------HHHHHHHHH
Q 016973            2 ATDLEKKAKEAFID----------DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-----------FTEAVADAN   60 (379)
Q Consensus         2 A~~l~~~g~~~~~~----------g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~-----------~~eAl~~~~   60 (379)
                      ++.++..|.+++..          +.+++|+..|+++|+++|+++.+|+++|.+|..+|+           |.+|+.+|.
T Consensus        31 ~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~  110 (145)
T d1zu2a1          31 ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQ  110 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhh
Confidence            56788899888854          556899999999999999999999999999988754           799999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHhccCHHHH
Q 016973           61 RAIELEPSMSKAYWRKATACMKLEEYETA   89 (379)
Q Consensus        61 ~Al~l~p~~~~a~~~la~~~~~lg~y~~A   89 (379)
                      +|+.++|++..++..++.+....+.|.++
T Consensus       111 kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1         111 QAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             cccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999887666666655

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.1e-09  Score=85.59  Aligned_cols=83  Identities=11%  Similarity=0.039  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 016973            2 ATDLEKKAKEAFID---DYFELAYDLYSQAIEISPNS--AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK   76 (379)
Q Consensus         2 A~~l~~~g~~~~~~---g~y~~Al~~y~~al~~~p~~--~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~l   76 (379)
                      ++.+++.|.+++..   +++.+|+.+|+++|..+|.+  ..+++++|.||+++|+|++|+.+|.+++.++|++..+...+
T Consensus        33 ~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~  112 (122)
T d1nzna_          33 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  112 (122)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            45788999999874   45667999999999998765  45899999999999999999999999999999999999988


Q ss_pred             HHHHHhcc
Q 016973           77 ATACMKLE   84 (379)
Q Consensus        77 a~~~~~lg   84 (379)
                      +.+..+++
T Consensus       113 ~~I~~~~~  120 (122)
T d1nzna_         113 RLIDKAMK  120 (122)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            87776553

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.2e-09  Score=105.54  Aligned_cols=114  Identities=9%  Similarity=-0.059  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      .+...|..+...|++..|+..|.+++..++  ..+++++|.++..+|+|++|+.+|.+|+.++|+++.+|+++|.++...
T Consensus       122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~  199 (497)
T d1ya0a1         122 KSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSK  199 (497)
T ss_dssp             ---------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHT
T ss_pred             HHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHc
Confidence            456678888888999999999998888776  467889999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      |++.+|+.+|.+++.++|..+.+...+..+-.....
T Consensus       200 ~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         200 GDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALE  235 (497)
T ss_dssp             TCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Confidence            999999999999999999999888888776555443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.84  E-value=7.7e-09  Score=95.47  Aligned_cols=111  Identities=7%  Similarity=0.038  Sum_probs=100.4

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHhccCH
Q 016973           10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN--FTEAVADANRAIELEPSMSKAY-WRKATACMKLEEY   86 (379)
Q Consensus        10 ~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~--~~eAl~~~~~Al~l~p~~~~a~-~~la~~~~~lg~y   86 (379)
                      ..+...|.+.+|+.+|++++..+|.+..+++.+|.++..+++  +++|+..+.+++.++|.+..++ +++|.++...+.+
T Consensus        81 ~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  160 (334)
T d1dcea1          81 SPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAP  160 (334)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCH
T ss_pred             chHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhcccc
Confidence            345556678999999999999999999999999999988875  8999999999999999988886 5788999999999


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973           87 ETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (379)
Q Consensus        87 ~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~  120 (379)
                      ++|+.++++++.++|++..++..++.+...++..
T Consensus       161 ~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~  194 (334)
T d1dcea1         161 AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ  194 (334)
T ss_dssp             HHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCH
Confidence            9999999999999999999999999998887765

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.73  E-value=2.5e-08  Score=89.87  Aligned_cols=92  Identities=17%  Similarity=0.125  Sum_probs=82.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHH
Q 016973            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE   87 (379)
Q Consensus         8 ~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~   87 (379)
                      ++..++..|++++|+..|.++|+.+|.+..++..++.+|...|++++|+..|+.+++++|++..++..++.++...+...
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK   81 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999998888887


Q ss_pred             HHHHHHHHHHhc
Q 016973           88 TAKVALEKGASL   99 (379)
Q Consensus        88 ~A~~~~~~a~~l   99 (379)
                      ++...+.+...+
T Consensus        82 ~a~~~~~~~~~~   93 (264)
T d1zbpa1          82 DFAQGAATAKVL   93 (264)
T ss_dssp             HHTTSCCCEECC
T ss_pred             HHHHHhhhhhcc
Confidence            776655544433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.73  E-value=3e-08  Score=89.96  Aligned_cols=102  Identities=17%  Similarity=0.040  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCC------C
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIK-LQNFTEAVADANRAIELEPS------M   69 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~-lg~~~eAl~~~~~Al~l~p~------~   69 (379)
                      ..+.+.|+++...|++++|+.+|.+++.+.+..      ..++.++|.+|.. +|++++|+..|.+|+.+.+.      .
T Consensus        78 ~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~  157 (290)
T d1qqea_          78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS  157 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhh
Confidence            345666777777777777777777776664333      4456666666644 47777777777777665321      2


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCh
Q 016973           70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (379)
Q Consensus        70 ~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~  104 (379)
                      ..+++++|.++..+|+|++|+..|++++...+...
T Consensus       158 ~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             hhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence            45566777777777777777777777777766554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=1.9e-08  Score=91.25  Aligned_cols=100  Identities=15%  Similarity=0.095  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISP------NSAELFADRAQASIKLQNFTEAVADANRAIELEPSM------   69 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p------~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~------   69 (379)
                      ++.+...|+.+...|+|++|+.+|.+|+.+..      ....+|.++|.||.++|++++|+.++.+++.+.+..      
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  116 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG  116 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence            34577789999999999999999999999832      225689999999999999999999999999987644      


Q ss_pred             HHHHHHHHHHHHh-ccCHHHHHHHHHHHHhcCC
Q 016973           70 SKAYWRKATACMK-LEEYETAKVALEKGASLAP  101 (379)
Q Consensus        70 ~~a~~~la~~~~~-lg~y~~A~~~~~~a~~l~p  101 (379)
                      ..++.++|.+|+. +|+|++|+.+|++++.+.+
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~  149 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYA  149 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence            6788999998865 7999999999999998854

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=1.4e-07  Score=74.19  Aligned_cols=85  Identities=18%  Similarity=0.135  Sum_probs=76.8

Q ss_pred             CHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHH
Q 016973           35 SAELFADRAQASIKLQ---NFTEAVADANRAIELEPSM-SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI  110 (379)
Q Consensus        35 ~~~~~~~ra~~~~~lg---~~~eAl~~~~~Al~l~p~~-~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l  110 (379)
                      .....++.|.|+.+..   +.++|+..++.++..+|.. ..++|.+|++|+++|+|+.|+.+++++++++|++..+....
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            3788899999999774   4679999999999999866 48999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 016973          111 KECEERIAE  119 (379)
Q Consensus       111 ~~~~~~l~~  119 (379)
                      ..++.++..
T Consensus       114 ~~Ie~~~~k  122 (124)
T d2pqrb1         114 SMVEDKIQK  122 (124)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999888765

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.63  E-value=3.1e-07  Score=84.35  Aligned_cols=95  Identities=13%  Similarity=0.111  Sum_probs=84.7

Q ss_pred             HcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973           14 IDDY-FELAYDLYSQAIEISPNSAELFADRAQASIKLQN----------FTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus        14 ~~g~-y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~----------~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..+. +++|+.+|+++|..+|++..+|..|+.++..+++          +.+|+.++++++..+|.+..+++.+|.++..
T Consensus        40 ~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~  119 (334)
T d1dcea1          40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR  119 (334)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             hcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH
Confidence            4444 4899999999999999999999999988776644          7899999999999999999999999999988


Q ss_pred             ccC--HHHHHHHHHHHHhcCCCChHHHH
Q 016973           83 LEE--YETAKVALEKGASLAPGDSRFTN  108 (379)
Q Consensus        83 lg~--y~~A~~~~~~a~~l~p~~~~~~~  108 (379)
                      +++  +++|+..+.++++++|.+.....
T Consensus       120 ~~~~~~~~a~~~~~~al~~~~~~~~~~~  147 (334)
T d1dcea1         120 LPEPNWARELELCARFLEADERNFHCWD  147 (334)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hccccHHHHHHHHHHHHhhCchhhhhhh
Confidence            876  89999999999999999877654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=3.5e-07  Score=82.25  Aligned_cols=98  Identities=15%  Similarity=-0.010  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPS------MSK   71 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~-----~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~------~~~   71 (379)
                      +....+|.+++..|++++|+.+|+++|...|.+     ..++..+|.+|+.+|++++|+..|.+++.+.+.      ...
T Consensus        13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   92 (366)
T d1hz4a_          13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   92 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence            344567999999999999999999999999887     457888999999999999999999999988643      356


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 016973           72 AYWRKATACMKLEEYETAKVALEKGASLA  100 (379)
Q Consensus        72 a~~~la~~~~~lg~y~~A~~~~~~a~~l~  100 (379)
                      +++.++.++...|++..|...+.+++.+.
T Consensus        93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~  121 (366)
T d1hz4a_          93 SLIQQSEILFAQGFLQTAWETQEKAFQLI  121 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            78899999999999999999999998764

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=8.2e-07  Score=86.74  Aligned_cols=82  Identities=15%  Similarity=0.056  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~   82 (379)
                      ..++..|..+...|+|++|+.+|.+|+.++|++..+|+++|.++...|++.+|+.+|.+|+.++|.++.++.+++.++..
T Consensus       153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999988865


Q ss_pred             cc
Q 016973           83 LE   84 (379)
Q Consensus        83 lg   84 (379)
                      ..
T Consensus       233 ~~  234 (497)
T d1ya0a1         233 AL  234 (497)
T ss_dssp             HT
T ss_pred             hh
Confidence            43

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=6.7e-07  Score=80.36  Aligned_cols=98  Identities=12%  Similarity=0.001  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELE------PSMSKAY   73 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~----~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~------p~~~~a~   73 (379)
                      .+...|..+...|+++.|+..|.+++...+.+    ...+.++|.+++.+|++++|+..+.+++.+.      |....++
T Consensus       215 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  294 (366)
T d1hz4a_         215 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL  294 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHH
Confidence            45677889999999999999999999887654    4567889999999999999999999998653      4567899


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 016973           74 WRKATACMKLEEYETAKVALEKGASLAP  101 (379)
Q Consensus        74 ~~la~~~~~lg~y~~A~~~~~~a~~l~p  101 (379)
                      +.+|.+|+.+|++++|+..|++++.+.+
T Consensus       295 ~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         295 LLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999998854

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.26  E-value=6.2e-06  Score=74.73  Aligned_cols=100  Identities=10%  Similarity=-0.014  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK-LQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~-lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l   83 (379)
                      +...+....+.|+++.|..+|.+++...|.+...+...|..... .|+.+.|...|++++..+|.++..|..++..+...
T Consensus       137 w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~  216 (308)
T d2onda1         137 YIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL  216 (308)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHc
Confidence            45667777888888888888888888888888888887776544 57888899999999999898999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCCh
Q 016973           84 EEYETAKVALEKGASLAPGDS  104 (379)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~  104 (379)
                      |+++.|...|++|+...|.++
T Consensus       217 g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         217 NEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             CCHHHHHHHHHHHHHSSSSCG
T ss_pred             CChHHHHHHHHHHHHhCCCCh
Confidence            999999999999998877554

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.25  E-value=9.2e-07  Score=72.41  Aligned_cols=66  Identities=18%  Similarity=0.009  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN-----------SAELFADRAQASIKLQNFTEAVADANRAIELEP   67 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~-----------~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p   67 (379)
                      +..+.+.|.+++..|+|++|+..|+++|.+.+.           ...+++++|.+|..+|++++|+.+|.+|+++.|
T Consensus        55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~  131 (156)
T d2hr2a1          55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  131 (156)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            346778999999999999999999999987432           245789999999999999999999999999965

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.21  E-value=4.9e-06  Score=75.46  Aligned_cols=112  Identities=10%  Similarity=-0.008  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-h
Q 016973            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSA-ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM-K   82 (379)
Q Consensus         5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~-~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~-~   82 (379)
                      +...+..+...|+++.|..+|+++|...|.+. .++..++.+..+.|+++.|+..|.+|+...|.....+...|.... .
T Consensus       102 ~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~  181 (308)
T d2onda1         102 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC  181 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence            45567888899999999999999999988764 468889999999999999999999999999999999999888754 4


Q ss_pred             ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (379)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (379)
                      .|+.+.|...|++++...|++..++.........
T Consensus       182 ~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~  215 (308)
T d2onda1         182 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH  215 (308)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            6899999999999999999998776665554443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=5.4e-06  Score=64.89  Aligned_cols=80  Identities=13%  Similarity=-0.029  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDY---FELAYDLYSQAIEISPNSA-ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~---y~~Al~~y~~al~~~p~~~-~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~   78 (379)
                      +.-|+-|.++.+..+   ...|+.+|.+++..+|.+. ++++++|.+|+++|+|++|+.++.++++++|.+..+...+-.
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~  115 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  115 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHH
Confidence            456788888887644   4699999999999998764 899999999999999999999999999999999988776655


Q ss_pred             HHHh
Q 016973           79 ACMK   82 (379)
Q Consensus        79 ~~~~   82 (379)
                      +..+
T Consensus       116 Ie~~  119 (124)
T d2pqrb1         116 VEDK  119 (124)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5433

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.05  E-value=7.2e-06  Score=73.28  Aligned_cols=76  Identities=12%  Similarity=0.039  Sum_probs=67.3

Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973           44 QASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (379)
Q Consensus        44 ~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~  119 (379)
                      .-++..|++++|+..|.++++.+|.+..++..+|.+|+.+|++++|+..|+++++++|++......+..+....+.
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~   79 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA   79 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccc
Confidence            3456789999999999999999999999999999999999999999999999999999999877777666544433

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.01  E-value=6.6e-05  Score=65.68  Aligned_cols=97  Identities=12%  Similarity=0.107  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYWRKA   77 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~----lg~~~eAl~~~~~Al~l~p~~~~a~~~la   77 (379)
                      +++++..|..++..++|.+|+.+|+++.+.  .+..+++++|.+|+.    ..++..|+..+..+....  ++.+.+.+|
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~   77 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhccc
Confidence            678999999999999999999999999876  478999999999998    678999999999987665  688899999


Q ss_pred             HHHHh----ccCHHHHHHHHHHHHhcCCC
Q 016973           78 TACMK----LEEYETAKVALEKGASLAPG  102 (379)
Q Consensus        78 ~~~~~----lg~y~~A~~~~~~a~~l~p~  102 (379)
                      .++..    ..++..|...|+++....+.
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~  106 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLKYA  106 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             cccccccccchhhHHHHHHHhhhhhhhhh
Confidence            88875    56889999999999877553

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.87  E-value=2.8e-05  Score=65.06  Aligned_cols=62  Identities=11%  Similarity=-0.010  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE   64 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~   64 (379)
                      +.+...|..+...|+|++|+.+++++|..+|.+..+|..++.+|..+|++.+|+..|.++..
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999843

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.61  E-value=0.00043  Score=54.24  Aligned_cols=84  Identities=14%  Similarity=0.049  Sum_probs=65.0

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----ccC
Q 016973           14 IDDYFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYWRKATACMK----LEE   85 (379)
Q Consensus        14 ~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~----lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~----lg~   85 (379)
                      ...++++|+.+|.++.+.  .++.+.+.+|.+|..    ..++.+|+..|.++....  ++.+++++|.+|..    ..+
T Consensus        35 ~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          35 SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC
T ss_pred             cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCC
Confidence            345778888888888775  467788888888876    356888888888887764  57888888888876    467


Q ss_pred             HHHHHHHHHHHHhcCC
Q 016973           86 YETAKVALEKGASLAP  101 (379)
Q Consensus        86 y~~A~~~~~~a~~l~p  101 (379)
                      +.+|+.+|+++.++..
T Consensus       111 ~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_         111 EKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHCCC
Confidence            8888888888877654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.38  E-value=0.00094  Score=57.93  Aligned_cols=95  Identities=17%  Similarity=0.138  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 016973            4 DLEKKAKEAFI----DDYFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYWR   75 (379)
Q Consensus         4 ~l~~~g~~~~~----~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~----lg~~~eAl~~~~~Al~l~p~~~~a~~~   75 (379)
                      .+...|..++.    ..+...+...+..+.+.  .++.+++++|.+|..    ..++.+|+..|.++...+  ++.++++
T Consensus       144 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~--g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~  219 (265)
T d1ouva_         144 GCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFN  219 (265)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred             hhhhhhhhhccCCCcccccccchhhhhccccc--cccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHH
Confidence            45566777775    56777888888888764  578999999999987    678999999999998885  6899999


Q ss_pred             HHHHHHh----ccCHHHHHHHHHHHHhcCCC
Q 016973           76 KATACMK----LEEYETAKVALEKGASLAPG  102 (379)
Q Consensus        76 la~~~~~----lg~y~~A~~~~~~a~~l~p~  102 (379)
                      +|.+|++    .+++.+|+.+|++|..+...
T Consensus       220 LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         220 LGAMQYNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             HHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             HHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence            9999986    44899999999999887653

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.35  E-value=0.00052  Score=52.67  Aligned_cols=78  Identities=12%  Similarity=0.148  Sum_probs=66.0

Q ss_pred             ccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcC-----CC-----------ceeeeccccccccccCcceEEE
Q 016973          181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-----GE-----------EAYHFQPRLFGKIIPAKCRYEV  244 (379)
Q Consensus       181 ~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~-----~~-----------~~~~~~~~L~~~I~p~~s~~~v  244 (379)
                      ++.+++++.+.|.+.++|+.++++.|.+.++.|.|+....     .+           ..|...+.|-..|++++.+...
T Consensus        13 vdi~e~~~~~~i~~~lPG~~~edi~v~v~~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~A~~   92 (115)
T d1shsa_          13 ISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKF   92 (115)
T ss_dssp             EEEEECSSEEEEEEECTTCCGGGEEEEEETTEEEEEEECCCCCCCTTCEEEEECSCCCCEEEEEEECSSCBCGGGCEEEE
T ss_pred             eEEEEcCCEEEEEEECCCCCHHHEEEEEECCEEEEEEEeccccccccccEEEEeeecccceEEEEecCCceeecceEEEE
Confidence            7899999999999999999999999999999999986421     11           1355567888899999999999


Q ss_pred             eCcEEEEEEeecCC
Q 016973          245 LSTKVEIRLAKAEP  258 (379)
Q Consensus       245 ~~~kiei~L~K~~~  258 (379)
                      .+.-+.|+|.|...
T Consensus        93 ~nGvL~I~lpK~~~  106 (115)
T d1shsa_          93 ENGVLSVILPKAES  106 (115)
T ss_dssp             ETTEEEEEEEBCGG
T ss_pred             ECCEEEEEEEeCCC
Confidence            99999999999753

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=97.18  E-value=0.001  Score=53.50  Aligned_cols=78  Identities=18%  Similarity=0.250  Sum_probs=62.9

Q ss_pred             ccccccCCeEEEEEEeCCCCCCceEEEEeec-EEEEEEEcC-----CCc----------eeeeccccccccccCcceEEE
Q 016973          181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQ-ILSVSIDVP-----GEE----------AYHFQPRLFGKIIPAKCRYEV  244 (379)
Q Consensus       181 ~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~-~l~v~~~~~-----~~~----------~~~~~~~L~~~I~p~~s~~~v  244 (379)
                      ++|+++++.+.|.+.++|+.+++|.|+++++ .+.++....     .+.          .|.-.+.|-..|++++.+-+.
T Consensus        45 ~dv~e~~~~~~i~~~lPG~~~edi~v~v~~~~~l~i~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~  124 (150)
T d1gmea_          45 MDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGL  124 (150)
T ss_dssp             EEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEEEE
T ss_pred             eeEEECCCEEEEEEEeCCCccCCEEEEEEEccceeEEEEEecccccccceeeeeeeccceEEEEEECCCCeeeceeEEEE
Confidence            7899999999999999999999999999864 566664321     111          244467889999999988889


Q ss_pred             eCcEEEEEEeecCC
Q 016973          245 LSTKVEIRLAKAEP  258 (379)
Q Consensus       245 ~~~kiei~L~K~~~  258 (379)
                      ...-++|+|.|...
T Consensus       125 ~nGvL~I~lpK~~~  138 (150)
T d1gmea_         125 ENGVLTVTVPKAEV  138 (150)
T ss_dssp             ETTEEEEEEECCCC
T ss_pred             ECCEEEEEEEcCCc
Confidence            99999999999753

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.06  E-value=0.0023  Score=49.88  Aligned_cols=92  Identities=13%  Similarity=0.019  Sum_probs=71.6

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----ccCHHHHH
Q 016973           15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK----LEEYETAK   90 (379)
Q Consensus        15 ~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~----lg~y~~A~   90 (379)
                      ..|+++|+.+|.++.+...  +.+.++++.  ....++++|+..+.++...  .++.+++.+|.+|+.    ..++.+|+
T Consensus         6 ~kd~~~A~~~~~kaa~~g~--~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELNE--MFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTTC--TTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHCCC--hhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHH
Confidence            4589999999999998853  445555553  3357899999999999876  479999999999986    56799999


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHH
Q 016973           91 VALEKGASLAPGDSRFTNLIKECE  114 (379)
Q Consensus        91 ~~~~~a~~l~p~~~~~~~~l~~~~  114 (379)
                      .+|+++.+..  ++.....+..+.
T Consensus        80 ~~~~~aa~~g--~~~a~~~Lg~~y  101 (133)
T d1klxa_          80 QYYSKACGLN--DQDGCLILGYKQ  101 (133)
T ss_dssp             HHHHHHHHTT--CHHHHHHHHHHH
T ss_pred             HHHhhhhccC--cchHHHHHHHHH
Confidence            9999998764  455555555543

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.03  E-value=0.66  Score=43.80  Aligned_cols=48  Identities=13%  Similarity=0.187  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 016973            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ   50 (379)
Q Consensus         3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg   50 (379)
                      +.++.+|..++..|+|.-|+++.+.++..+|++..+...+|.+|.++|
T Consensus       431 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~  478 (505)
T d2cfua2         431 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG  478 (505)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            344455555555555555555555555555555555555555554443

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.82  E-value=0.71  Score=32.94  Aligned_cols=30  Identities=23%  Similarity=0.321  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 016973            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI   31 (379)
Q Consensus         2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~   31 (379)
                      |-.+..+|..+-..|+|++|+.+|.++|+.
T Consensus        15 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~   44 (93)
T d1wfda_          15 AVAVLKRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345666777777777777777777777654

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.30  E-value=0.87  Score=31.42  Aligned_cols=27  Identities=15%  Similarity=0.166  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 016973            4 DLEKKAKEAFIDDYFELAYDLYSQAIE   30 (379)
Q Consensus         4 ~l~~~g~~~~~~g~y~~Al~~y~~al~   30 (379)
                      .+-.+|..+...|.|++||+++.+|..
T Consensus        10 ~~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1          10 QQSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344456666666666666666555433