Citrus Sinensis ID: 016981
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 379 | 2.2.26 [Sep-21-2011] | |||||||
| Q6ZIK0 | 362 | Probable tocopherol O-met | yes | no | 0.667 | 0.698 | 0.762 | 1e-115 | |
| Q9ZSK1 | 348 | Tocopherol O-methyltransf | yes | no | 0.678 | 0.738 | 0.730 | 1e-111 | |
| Q8KZ94 | 283 | Demethylrebeccamycin-D-gl | N/A | no | 0.480 | 0.643 | 0.367 | 2e-26 | |
| Q9KJ20 | 565 | Glycine/sarcosine/dimethy | N/A | no | 0.548 | 0.368 | 0.290 | 5e-20 | |
| Q9P3R1 | 379 | Sterol 24-C-methyltransfe | N/A | no | 0.612 | 0.612 | 0.253 | 4e-18 | |
| Q96WX4 | 377 | Sterol 24-C-methyltransfe | N/A | no | 0.635 | 0.639 | 0.261 | 6e-18 | |
| Q6C2D9 | 381 | Sterol 24-C-methyltransfe | yes | no | 0.498 | 0.496 | 0.282 | 4e-17 | |
| O14321 | 378 | Sterol 24-C-methyltransfe | yes | no | 0.633 | 0.634 | 0.263 | 8e-17 | |
| Q54I98 | 354 | Probable cycloartenol-C-2 | no | no | 0.635 | 0.680 | 0.263 | 3e-16 | |
| Q9KJ21 | 279 | Sarcosine/dimethylglycine | N/A | no | 0.551 | 0.749 | 0.288 | 3e-16 |
| >sp|Q6ZIK0|GTOMC_ORYSJ Probable tocopherol O-methyltransferase, chloroplastic OS=Oryza sativa subsp. japonica GN=VTE4 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 193/253 (76%), Positives = 219/253 (86%)
Query: 95 LKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSED 154
LKEGIA YDESS +WE IWG+HMHHGFY+ + S+SDHR AQ+RMIEE+L FA V +D
Sbjct: 74 LKEGIAGLYDESSGVWESIWGEHMHHGFYDAGEAASMSDHRRAQIRMIEESLAFAAVPDD 133
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
K+PK+VVDVGCGIGGSSRYLA K+GA+C GITLSPVQA+R NALAA +GL+DKVSFQV
Sbjct: 134 AEKKPKSVVDVGCGIGGSSRYLANKYGAQCYGITLSPVQAERGNALAAEQGLSDKVSFQV 193
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE 274
GDAL+QPFPDGQFDLVWSMESGEHMPDK +FVSELARV AP IIIVTWCHR+L PSEE
Sbjct: 194 GDALEQPFPDGQFDLVWSMESGEHMPDKRQFVSELARVAAPGARIIIVTWCHRNLEPSEE 253
Query: 275 SLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSA 334
SL+P E LLK+ICDAYYLP WCS +DYVK+ +SLSLEDI+ DWS+NVAPFWPAVI SA
Sbjct: 254 SLKPDELNLLKRICDAYYLPDWCSPSDYVKIAESLSLEDIRTADWSENVAPFWPAVIKSA 313
Query: 335 LTWKGFTSLLRTG 347
LTWKG TSLLR+G
Sbjct: 314 LTWKGLTSLLRSG 326
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Involved in the synthesis of tocopherol (vitamin E). Methylates gamma- and delta-tocopherol to form beta- and alpha-tocopherol, respectively. Oryza sativa subsp. japonica (taxid: 39947) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 9EC: 5 |
| >sp|Q9ZSK1|GTOMC_ARATH Tocopherol O-methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=VTE4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 403 bits (1035), Expect = e-111, Method: Compositional matrix adjust.
Identities = 190/260 (73%), Positives = 219/260 (84%), Gaps = 3/260 (1%)
Query: 95 LKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSD--HRAAQVRMIEETLRFAGVS 152
L++GIAEFY+E+S LWE+IWGDHMHHGFY+PDSSV +SD H+ AQ+RMIEE+LRFAGV+
Sbjct: 60 LRKGIAEFYNETSGLWEEIWGDHMHHGFYDPDSSVQLSDSGHKEAQIRMIEESLRFAGVT 119
Query: 153 EDPTKRPKN-VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVS 211
++ ++ VVDVGCGIGGSSRYLA KFGA+C GITLSPVQA+RAN LAAA+ LA K S
Sbjct: 120 DEEEEKKIKKVVDVGCGIGGSSRYLASKFGAECIGITLSPVQAKRANDLAAAQSLAHKAS 179
Query: 212 FQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
FQV DAL QPF DG+FDLVWSMESGEHMPDK+KFV EL RV AP G IIIVTWCHR+L+
Sbjct: 180 FQVADALDQPFEDGKFDLVWSMESGEHMPDKAKFVKELVRVAAPGGRIIIVTWCHRNLSA 239
Query: 272 SEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVI 331
EE+LQPWEQ +L KIC +YLPAWCST DYV LLQS SL+DIK DWS+NVAPFWPAVI
Sbjct: 240 GEEALQPWEQNILDKICKTFYLPAWCSTDDYVNLLQSHSLQDIKCADWSENVAPFWPAVI 299
Query: 332 HSALTWKGFTSLLRTGKLSI 351
+ALTWKG SLLR+G SI
Sbjct: 300 RTALTWKGLVSLLRSGMKSI 319
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Involved in the synthesis of tocopherol (vitamin E). Methylates gamma- and delta-tocopherol to form beta- and alpha-tocopherol, respectively. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|Q8KZ94|REBMT_NOCAE Demethylrebeccamycin-D-glucose O-methyltransferase OS=Lechevalieria aerocolonigenes GN=rebM PE=1 SV=1 | Back alignment and function description |
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Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 106/193 (54%), Gaps = 11/193 (5%)
Query: 82 TSTTTMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYE-PDSSVSVSDHRAAQVR 140
T + + A A E + + YD+ + + IWG+++H G++E + VSV D A R
Sbjct: 2 TESKSEGTAVAAPTPEEVRQMYDDFTDPFARIWGENLHFGYWEDAGADVSVDD---ATDR 58
Query: 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANAL 200
+ +E + V + V+DVGCGIG + LA + GI++S Q +ANA
Sbjct: 59 LTDEMIALLDV-----RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANAR 113
Query: 201 AAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTII 260
A A GLA++V+F DA+ PF D FD VW++ES HMPD+ + + E+ARV P GT+
Sbjct: 114 ATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVA 173
Query: 261 IVTWCHRDLAPSE 273
I + LAP E
Sbjct: 174 IADFVL--LAPVE 184
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Glycosyl O-methyltransferase that catalyzes the final step in the biosynthesis of rebeccamycin, an indolocarbazole alkaloid that inhibits topoisomerase 1. Has broad substrate specificity and functions as glycosyl O-methyltransferase on a number of rebeccamycin analogs. Lechevalieria aerocolonigenes (taxid: 68170) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9KJ20|GSDMT_ACTHA Glycine/sarcosine/dimethylglycine N-methyltransferase OS=Actinopolyspora halophila PE=1 SV=1 | Back alignment and function description |
|---|
Score = 99.4 bits (246), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 109/231 (47%), Gaps = 23/231 (9%)
Query: 104 DESSSLWEDIWG-DHMHHGFYE-PDSSVSVSDHRAAQVRMIEETLRFAG-VSEDPTKRPK 160
+++ + + +WG + +H G Y+ P ++ + R Q R AG V P R
Sbjct: 308 EDADNFYYHVWGGNDIHVGLYQTPQEDIATASERTVQ--------RMAGKVDISPETR-- 357
Query: 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220
++D+G G GG++RYLA+ +G + LS V+ QR + A GL + G
Sbjct: 358 -ILDLGAGYGGAARYLARTYGCHVTCLNLSEVENQRNREITRAEGLEHLIEVTDGSFEDL 416
Query: 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWE 280
P+ D FD+VWS +S H D+S+ + E+ RV P G+++ D A E
Sbjct: 417 PYQDNAFDVVWSQDSFLHSGDRSRVMEEVTRVLKPKGSVLFTDPMASDSAKKNE------ 470
Query: 281 QELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVI 331
L I D +L + S Y K L L L++I+ ED S+ + + V+
Sbjct: 471 ---LGPILDRLHLDSLGSPGFYRKELTRLGLQNIEFEDLSEYLPVHYGRVL 518
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Catalyzes the methylation of glycine, sarcosine and dimethylglycine to sarcosine, dimethylglycine and betaine, respectively, with S-adenosylmethionine (AdoMet) acting as the methyl donor. Actinopolyspora halophila (taxid: 1850) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 7 |
| >sp|Q9P3R1|ERG6_NEUCR Sterol 24-C-methyltransferase erg-4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=erg-4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 116/260 (44%), Gaps = 28/260 (10%)
Query: 79 SSTTSTTTMSDAAAR--ELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSV--SVSDH 134
+ T T +D AR E +Y+ ++ ++E WG H Y P S +++ H
Sbjct: 57 NKTAEAETQADREARTKEYATLTRHYYNLATDIYEYGWGQCFHFCRYSPGESFYQAIARH 116
Query: 135 R---AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSP 191
AAQ+ + K+ V+DVGCG+GG +R +AK A G+ +
Sbjct: 117 EHYLAAQIGI---------------KKDMKVLDVGCGVGGPAREIAKFTDAHITGLNNND 161
Query: 192 VQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELAR 251
Q RA A GL+ ++ F GD +Q FPD FD V+++E+ H P E+ R
Sbjct: 162 YQIDRATHYAVRDGLSGQLKFVKGDFMQMSFPDNSFDAVYAIEATVHAPKLEGVYGEIYR 221
Query: 252 VTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSL 311
V P GT + W D ++++ + L ++ + + + ++ + ++++
Sbjct: 222 VLKPGGTFGVYEWLMTD-NYDNDNVEHRDIRLAIEVGNG--ISNMVTISEGLAAMKNVGF 278
Query: 312 EDIKAEDWSQNVAP---FWP 328
E + ED + P +WP
Sbjct: 279 ELVHHEDLADRNDPMPWYWP 298
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Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of zymosterol to form fecosterol. Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q96WX4|ERG6_PNECA Sterol 24-C-methyltransferase OS=Pneumocystis carinii GN=erg6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 111/256 (43%), Gaps = 15/256 (5%)
Query: 102 FYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKN 161
+Y+ + +E W H + D S S + R + AG+ E T
Sbjct: 80 YYNLVTDFYEYGWSTSFHFCRFAKDESFSQAIARHEHYIALH-----AGIREGET----- 129
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221
V+DVGCG+GG + ++ GA G+ + Q QRA + +GL+DK+ F GD +Q P
Sbjct: 130 VLDVGCGVGGPACQISVFTGANIVGLNNNDYQIQRAKYYSEKKGLSDKLKFIKGDFMQMP 189
Query: 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ 281
FP+ FD ++S+E+ H P SE+ RV P G W L +E+ P Q
Sbjct: 190 FPENSFDKIYSIEATIHAPSLEGVYSEIYRVLKPGGLYASYEWVM--LNKYDEN-DPEHQ 246
Query: 282 ELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPF-WPAVIHSAL-TWKG 339
+++ I +P + L + E I +E+ S +P W + L +
Sbjct: 247 QIVYGIEIGDSIPKISKIGEAEAALIKVGFEIIHSEELSTKNSPLPWYYYLDGDLRKVRS 306
Query: 340 FTSLLRTGKLSILCCW 355
F + +++ + W
Sbjct: 307 FRDFISIARMTTIGKW 322
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Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of zymosterol to form fecosterol. Pneumocystis carinii (taxid: 4754) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q6C2D9|ERG6_YARLI Sterol 24-C-methyltransferase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ERG6 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 16/205 (7%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221
V+DVGCG+GG +R +A+ GA G+ + Q +R + +G D+V++ GD +Q
Sbjct: 132 VLDVGCGVGGPAREIARFTGANIVGLNNNDYQVERGTHYSEVQGFGDQVTYVKGDFMQMD 191
Query: 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ 281
FPD FD V+++E+ H P SE+ RV P G + W D +ES P +
Sbjct: 192 FPDNSFDAVYAIEATVHAPVLEGVYSEIFRVLKPGGVFGVYEWVMTD--EYDES-NPEHR 248
Query: 282 ELLKKICDAYYLPAWCSTADYVKLLQSLSL-----EDIKAED----WSQNVAPFWPAVIH 332
++ I +P VK L+++ ED+ A+D W +A W V
Sbjct: 249 DICYGIEKGDGIPKMYKREVAVKALENVGFDIEYQEDLAADDAEVPWYYPLAGEWKYV-- 306
Query: 333 SALTWKGFTSLLRTGKLSILCCWNL 357
+ ++ RT +L + N+
Sbjct: 307 --QSLNDIVTIGRTSRLGRMVTMNV 329
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Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of zymosterol to form fecosterol. Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|O14321|ERG6_SCHPO Sterol 24-C-methyltransferase erg6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 88.6 bits (218), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 115/269 (42%), Gaps = 29/269 (10%)
Query: 96 KEGIAEFYDESSSLWEDIWGDHMHHG-FYEPDS---SVSVSDHRAAQVRMIEETLRFAGV 151
K + +YD ++ L+E W H FY+ ++ S++ +H A RM G+
Sbjct: 72 KSVVNSYYDLATDLYEYGWSQSFHFSRFYKGEAFAQSIARHEHYLA-YRM--------GI 122
Query: 152 SEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVS 211
P R V+DVGCG+GG +R + + G G+ + Q R N A R L K
Sbjct: 123 K--PGSR---VLDVGCGVGGPAREITEFTGCNLVGLNNNDYQISRCNNYAVKRNLDKKQV 177
Query: 212 FQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
F GD + PF D FD V+++E+ H P E+ RV P G + W D
Sbjct: 178 FVKGDFMHMPFEDNTFDYVYAIEATVHAPSLEGVYGEIFRVLKPGGVFGVYEWVMSD--- 234
Query: 272 SEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAP----FW 327
+S P +E+ I +P D V+ ++ + ++ +D + + P ++
Sbjct: 235 DYDSSIPKHREIAYNIEVGDGIPQMVRKCDAVEAIKKVGFNLLEEDDLTDHDNPDLPWYY 294
Query: 328 PA---VIHSALTWKGFTSLLRTGKLSILC 353
P + W FT + RT +L L
Sbjct: 295 PLTGDITKCQNIWDVFT-VFRTSRLGKLV 322
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Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of zymosterol to form fecosterol. Involved in the biosynthesis or ergosterol which is important for plasma membrane structure and function and for localization of plasma membrane proteins. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q54I98|SMT1_DICDI Probable cycloartenol-C-24-methyltransferase 1 OS=Dictyostelium discoideum GN=smt1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 107/258 (41%), Gaps = 17/258 (6%)
Query: 99 IAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKR 158
+ FYD ++ +E WG H S S R ++ M + F G+
Sbjct: 62 VNTFYDLATDFYEFGWGQSFHFATRHKYESFEASIARH-EMYMAHQLGLFPGMK------ 114
Query: 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218
V+D+GCG+GG R +A+ GA G+ + Q QR L + GL+ SF D +
Sbjct: 115 ---VIDIGCGVGGPMRTIARFSGANVVGLNNNEYQIQRGKRLNESAGLSHLCSFIKADFM 171
Query: 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQP 278
P D +D + +E+ H PD E+ R+ P G W + E+ P
Sbjct: 172 HVPVEDNTYDCAYQIEATCHAPDLVGLYKEVFRIVKPGGLFGGYEWIMTNKFNPED---P 228
Query: 279 WEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTWK 338
E + K+I LP A+ + ++ E I A D ++ W + S ++
Sbjct: 229 VEVNIKKQIELGNGLPDLVKPAEIINAAKAAGFEVITAFDVAETSELPWYLPLSSGVSIT 288
Query: 339 GF--TSLLR--TGKLSIL 352
GF T + R TGK + L
Sbjct: 289 GFLHTGVGRYLTGKFTQL 306
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Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of cycloartenol to form 24-methylene cycloartenol. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q9KJ21|SDMT_ECTHL Sarcosine/dimethylglycine N-methyltransferase OS=Ectothiorhodospira halochloris PE=1 SV=1 | Back alignment and function description |
|---|
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 102/229 (44%), Gaps = 20/229 (8%)
Query: 104 DESSSLWEDIWG-DHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNV 162
+++ + + IWG + +H G Y D R RM + + S V
Sbjct: 20 EDADNFYAIIWGGEDIHIGLYNDDEEPIADASRRTVERMSSLSRQLGPDS--------YV 71
Query: 163 VDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P 221
+D+G G GGS+RYLA K+G K + LS + +R + +G+ D + V A + P
Sbjct: 72 LDMGAGYGGSARYLAHKYGCKVAALNLSERENERDRQMNKEQGV-DHLIEVVDAAFEDVP 130
Query: 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ 281
+ DG FDLVWS +S H PD+ + + E +RV G I D P E +QP
Sbjct: 131 YDDGVFDLVWSQDSFLHSPDRERVLREASRVLRSGGEFIFTDPMQADDCP-EGVIQP--- 186
Query: 282 ELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAV 330
I D +L + Y + L+ L E+I ED + + + V
Sbjct: 187 -----ILDRIHLETMGTPNFYRQTLRDLGFEEITFEDHTHQLPRHYGRV 230
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Catalyzes the methylation of sarcosine and dimethylglycine to dimethylglycine and betaine, respectively, with S-adenosylmethionine (AdoMet) acting as the methyl donor. It has strict specificity for sarcosine and dimethylglycine as the methyl group acceptors. Ectothiorhodospira halochloris (taxid: 1052) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 379 | ||||||
| 91694293 | 344 | gamma-tocopherol methyltransferase [Goss | 0.709 | 0.781 | 0.772 | 1e-126 | |
| 66732623 | 358 | gamma-tocopherol methyltransferase [Lotu | 0.815 | 0.863 | 0.696 | 1e-125 | |
| 350538087 | 362 | gamma-tocopherol methyltransferase [Sola | 0.704 | 0.737 | 0.767 | 1e-122 | |
| 225454678 | 345 | PREDICTED: probable tocopherol O-methylt | 0.767 | 0.843 | 0.723 | 1e-122 | |
| 224126185 | 293 | predicted protein [Populus trichocarpa] | 0.683 | 0.883 | 0.804 | 1e-122 | |
| 91694287 | 368 | gamma-tocopherol methyltransferase [Sola | 0.741 | 0.763 | 0.709 | 1e-122 | |
| 325516264 | 361 | gamma-tocopherol methyltransferase [Sola | 0.704 | 0.739 | 0.764 | 1e-122 | |
| 318068176 | 368 | gamma-tocopherol methyltransferase [Sola | 0.741 | 0.763 | 0.721 | 1e-122 | |
| 359807465 | 302 | tocopherol O-methyltransferase, chloropl | 0.680 | 0.854 | 0.795 | 1e-121 | |
| 347326940 | 362 | gamma tocopherol methyl transferase [Sol | 0.704 | 0.737 | 0.764 | 1e-121 |
| >gi|91694293|gb|ABE41798.1| gamma-tocopherol methyltransferase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 214/277 (77%), Positives = 242/277 (87%), Gaps = 8/277 (2%)
Query: 75 ITRASSTTSTTTMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDH 134
+ A+S+ STTT L+EGIAEFYD+SS +WEDIWGDHMHHG+Y+PDS+VS SDH
Sbjct: 47 VKAAASSLSTTT--------LQEGIAEFYDQSSGIWEDIWGDHMHHGYYDPDSNVSGSDH 98
Query: 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQA 194
AAQ+RMIEE+LRFAG++EDP +PK +VDVGCGIGGSSRYLA+K+GAKCQGITLSPVQA
Sbjct: 99 PAAQIRMIEESLRFAGITEDPANKPKTIVDVGCGIGGSSRYLARKYGAKCQGITLSPVQA 158
Query: 195 QRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTA 254
RANALA +GLADKVSFQV DAL QPFPD QFDLVWSMESGEHMPDK KFV ELARV A
Sbjct: 159 GRANALAKDQGLADKVSFQVADALNQPFPDDQFDLVWSMESGEHMPDKPKFVKELARVAA 218
Query: 255 PAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314
P GTIIIVTWCHRDL PSEE LQPWE++LL +IC+AYYLP WCST+DYVKLLQSLSL+DI
Sbjct: 219 PGGTIIIVTWCHRDLGPSEEDLQPWEKKLLNRICNAYYLPEWCSTSDYVKLLQSLSLQDI 278
Query: 315 KAEDWSQNVAPFWPAVIHSALTWKGFTSLLRTGKLSI 351
KA DW++NVAPFWPAVI SALTWKGFTSLLR+G +I
Sbjct: 279 KAADWTENVAPFWPAVIRSALTWKGFTSLLRSGLKTI 315
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|66732623|gb|AAY52459.1| gamma-tocopherol methyltransferase [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/323 (69%), Positives = 251/323 (77%), Gaps = 14/323 (4%)
Query: 43 ACLRPSLLPAPPPAP----------TWRSSLLFGVSSFSRKLITRASSTTSTTTMSDAAA 92
A + S+ P PP T R + FS + TR S T + A
Sbjct: 2 ATMMMSIFPPPPSVASLFILSHCTHTIRVQSTTQFTGFSIRTRTRDCSRILLTEEREMAV 61
Query: 93 RE----LKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRF 148
E L+ GIAEFYDESS LWED+WGDHMHHGFYE D +VSVSDHR AQ+RMIEE+LRF
Sbjct: 62 MEEKKLLQTGIAEFYDESSGLWEDMWGDHMHHGFYEQDVTVSVSDHRVAQIRMIEESLRF 121
Query: 149 AGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD 208
A +SEDP K+P+++VDVGCGIGGSSRYLAKKF AK GITLSPVQAQRANALAA++GLAD
Sbjct: 122 AALSEDPAKKPESIVDVGCGIGGSSRYLAKKFQAKSVGITLSPVQAQRANALAASQGLAD 181
Query: 209 KVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268
KVSFQV DAL+QPFPDGQFDLVWSMESGEHMPDK KFV ELARV AP GTIIIVTWCHRD
Sbjct: 182 KVSFQVADALEQPFPDGQFDLVWSMESGEHMPDKPKFVGELARVAAPGGTIIIVTWCHRD 241
Query: 269 LAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWP 328
L P+EESLQPWEQ LLK+ICDA+YLPAWCSTADYVKLL+S SL+DIK+ DWS VAPFWP
Sbjct: 242 LGPAEESLQPWEQNLLKRICDAFYLPAWCSTADYVKLLESHSLQDIKSADWSPFVAPFWP 301
Query: 329 AVIHSALTWKGFTSLLRTGKLSI 351
AVI SA TWKG TSLLR+G +I
Sbjct: 302 AVIRSAFTWKGLTSLLRSGMKTI 324
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350538087|ref|NP_001233814.1| gamma-tocopherol methyltransferase [Solanum lycopersicum] gi|91694285|gb|ABE41794.1| gamma-tocopherol methyltransferase [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 205/267 (76%), Positives = 234/267 (87%)
Query: 81 TTSTTTMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVR 140
++S+ + +ELK+GIA+ YDESS +WEDIWGDHMHHG+YEP SSV +SDHRAAQ+R
Sbjct: 63 SSSSVEVGIQNQQELKKGIADLYDESSGIWEDIWGDHMHHGYYEPKSSVELSDHRAAQIR 122
Query: 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANAL 200
MIE+ L FA +SEDP K+P ++VDVGCGIGGSSRYLAKK+GA +GITLSPVQA+RA AL
Sbjct: 123 MIEQALSFAAISEDPAKKPTSIVDVGCGIGGSSRYLAKKYGATAKGITLSPVQAERAQAL 182
Query: 201 AAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTII 260
A A+GL DKVSFQV DAL QPFPDGQFDLVWSMESGEHMP+K KFV ELARV AP GTII
Sbjct: 183 ADAQGLGDKVSFQVADALNQPFPDGQFDLVWSMESGEHMPNKEKFVGELARVAAPGGTII 242
Query: 261 IVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWS 320
+VTWCHRDL+PSEESL P E+ELL KIC A+YLPAWCSTADYVKLLQS SL+DIKAEDWS
Sbjct: 243 LVTWCHRDLSPSEESLTPEEKELLNKICKAFYLPAWCSTADYVKLLQSNSLQDIKAEDWS 302
Query: 321 QNVAPFWPAVIHSALTWKGFTSLLRTG 347
+NVAPFWPAVI SALTWKGFTS+LR+G
Sbjct: 303 ENVAPFWPAVIKSALTWKGFTSVLRSG 329
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225454678|ref|XP_002269749.1| PREDICTED: probable tocopherol O-methyltransferase, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/304 (72%), Positives = 247/304 (81%), Gaps = 13/304 (4%)
Query: 47 PSLLPAPP---PAPTWRSSLLFGVSSFSRKLITRASSTTSTTTMSDAAARELKEGIAEFY 103
P LP+PP P P + SR+ ++ ST + DA+ LK+GIAE Y
Sbjct: 19 PQRLPSPPHVWPRPAV-------TAPTSRRFARLTAAAISTMSPEDAS---LKKGIAELY 68
Query: 104 DESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVV 163
D+SS LWEDIWGDHMHHGFYEPDS+ S +DHR AQ+RMIEE+LRFAGVSE+ KRPK VV
Sbjct: 69 DQSSGLWEDIWGDHMHHGFYEPDSAASDADHRFAQIRMIEESLRFAGVSEEGEKRPKRVV 128
Query: 164 DVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP 223
DVGCGIGGSSRYLAKK+GA CQGITLSP+QAQRA LAA++GLADKVSFQV DAL QPFP
Sbjct: 129 DVGCGIGGSSRYLAKKYGASCQGITLSPLQAQRAQTLAASQGLADKVSFQVADALDQPFP 188
Query: 224 DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQEL 283
DGQFDLVWSMESGEHMPDK KFVSELARV AP GTII+VTWCHRDL+PSEESL+P E+ L
Sbjct: 189 DGQFDLVWSMESGEHMPDKKKFVSELARVVAPGGTIILVTWCHRDLSPSEESLKPEEKAL 248
Query: 284 LKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTWKGFTSL 343
L KIC AYYLP WCST DYVKLL+SLSL+DIKA DWS+ VAPFWPAVI SALT+KGF SL
Sbjct: 249 LDKICSAYYLPDWCSTTDYVKLLESLSLQDIKAADWSEYVAPFWPAVIRSALTFKGFISL 308
Query: 344 LRTG 347
LR+G
Sbjct: 309 LRSG 312
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224126185|ref|XP_002319777.1| predicted protein [Populus trichocarpa] gi|222858153|gb|EEE95700.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 210/261 (80%), Positives = 226/261 (86%), Gaps = 2/261 (0%)
Query: 93 RELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVS--DHRAAQVRMIEETLRFAG 150
+ELK+GIAE YDESS +WEDIWGDHMHHGFY PD VS S DHRAAQ+RM++E LRFAG
Sbjct: 4 QELKQGIAELYDESSGVWEDIWGDHMHHGFYNPDDQVSGSGSDHRAAQIRMMQEALRFAG 63
Query: 151 VSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKV 210
+SEDP K PK VVDVGCGIGGSSRY+A+KFGAKCQGITLSP QAQRANALA GLADKV
Sbjct: 64 ISEDPEKGPKTVVDVGCGIGGSSRYIARKFGAKCQGITLSPFQAQRANALAETEGLADKV 123
Query: 211 SFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLA 270
SFQV DAL+QPFPDGQFDLVWSMESGEHMPDK KFV ELARV AP TI+IVTWCHR L
Sbjct: 124 SFQVADALEQPFPDGQFDLVWSMESGEHMPDKRKFVGELARVAAPGATIVIVTWCHRVLG 183
Query: 271 PSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAV 330
PSEESLQPWE + LKKICDAYYLP WCSTADYV LL+SLSL+DIK DWSQ VAPFWPAV
Sbjct: 184 PSEESLQPWEMKHLKKICDAYYLPDWCSTADYVNLLESLSLQDIKTADWSQYVAPFWPAV 243
Query: 331 IHSALTWKGFTSLLRTGKLSI 351
I SALTWKG TSLLR+G +I
Sbjct: 244 IRSALTWKGLTSLLRSGMKTI 264
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|91694287|gb|ABE41795.1| gamma-tocopherol methyltransferase [Solanum tuberosum] | Back alignment and taxonomy information |
|---|
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 210/296 (70%), Positives = 244/296 (82%), Gaps = 15/296 (5%)
Query: 67 VSSFSRKLITRASSTT-----STTTMSDAAA----------RELKEGIAEFYDESSSLWE 111
+ +++R+ I SS + S T M+ ++ +ELK+GIA+ YDESS +WE
Sbjct: 40 IQNYTRRRIITCSSNSRRRMASVTAMNAGSSSSVEVGIQNQQELKKGIADLYDESSGIWE 99
Query: 112 DIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGG 171
DIWGDHMHHG+YEP SSV +SDHRAAQ+RMIE+ L FA +SEDP K+P ++VDVGCGIGG
Sbjct: 100 DIWGDHMHHGYYEPQSSVELSDHRAAQIRMIEKALSFAAISEDPAKKPTSIVDVGCGIGG 159
Query: 172 SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVW 231
SSRYLAKK+GA +GITLSPVQA+RA ALA A+GL DKVSFQV DAL QPFPDGQFDLVW
Sbjct: 160 SSRYLAKKYGATAKGITLSPVQAERAQALADAQGLGDKVSFQVADALNQPFPDGQFDLVW 219
Query: 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY 291
SMESGEHMP+K KFV ELARV AP GTII+VTWCHRDL+PSEESL P E+ELL KIC A+
Sbjct: 220 SMESGEHMPNKEKFVGELARVAAPGGTIILVTWCHRDLSPSEESLTPEEKELLNKICKAF 279
Query: 292 YLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTWKGFTSLLRTG 347
YLPAWCS ADYVKLLQS SL+DIKAEDWS+NVAPFWPAVI SALTWKGFTS+LR+G
Sbjct: 280 YLPAWCSAADYVKLLQSNSLQDIKAEDWSENVAPFWPAVIKSALTWKGFTSVLRSG 335
|
Source: Solanum tuberosum Species: Solanum tuberosum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|325516264|gb|ADZ24710.1| gamma-tocopherol methyltransferase [Solanum pennellii] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 204/267 (76%), Positives = 233/267 (87%)
Query: 81 TTSTTTMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVR 140
++S+ + +ELK+GIA+ YDESS +WEDIWGDHMHHG+YEP SSV +SDHRAAQ+R
Sbjct: 62 SSSSVEVGIQNQQELKKGIADLYDESSGIWEDIWGDHMHHGYYEPKSSVELSDHRAAQIR 121
Query: 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANAL 200
MIE+ L FA +SEDP K+P ++VDVGCGIGGSSRYLAKK+GA +GITLSPVQA+RA AL
Sbjct: 122 MIEQALSFAAISEDPAKKPTSIVDVGCGIGGSSRYLAKKYGATAKGITLSPVQAERAQAL 181
Query: 201 AAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTII 260
A A+GL DKVSFQV DAL QPFPDGQFDLVWSMESGEHMP+K KFV ELARV AP GTII
Sbjct: 182 ADAQGLGDKVSFQVADALNQPFPDGQFDLVWSMESGEHMPNKEKFVGELARVAAPGGTII 241
Query: 261 IVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWS 320
+VTWCHRDL+PSEESL P E+ELL KIC A+YLPAWCSTADYV LLQS SL+DIKAEDWS
Sbjct: 242 LVTWCHRDLSPSEESLTPEEKELLNKICKAFYLPAWCSTADYVNLLQSNSLQDIKAEDWS 301
Query: 321 QNVAPFWPAVIHSALTWKGFTSLLRTG 347
+NVAPFWPAVI SALTWKGFTS+LR+G
Sbjct: 302 ENVAPFWPAVIKSALTWKGFTSVLRSG 328
|
Source: Solanum pennellii Species: Solanum pennellii Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|318068176|gb|ADV36922.1| gamma-tocopherol methyltransferase [Solanum tuberosum] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 210/291 (72%), Positives = 243/291 (83%), Gaps = 10/291 (3%)
Query: 64 LFGVSSFSRKLITRASSTTSTTTMSDAAA-------RELKEGIAEFYDESSSLWEDIWGD 116
+ SS SR+ R +S T+ +S ++ +ELK+GIA+ YDESS +WEDIWGD
Sbjct: 48 IITCSSNSRR---RMASVTALNAVSSSSVEVGIQNQQELKKGIADLYDESSGIWEDIWGD 104
Query: 117 HMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYL 176
HMHHG+YEP SSV +SDHRAAQ+RMIE+ L FA +SEDP K+P ++VDVGCGIGGSSRYL
Sbjct: 105 HMHHGYYEPQSSVELSDHRAAQIRMIEKALSFAAISEDPAKKPTSIVDVGCGIGGSSRYL 164
Query: 177 AKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236
AKK+GA +GITLSPVQA+RA ALA A+GL DKVSFQV DAL QPFPDGQFDLVWSMESG
Sbjct: 165 AKKYGATAKGITLSPVQAERAQALADAQGLGDKVSFQVADALNQPFPDGQFDLVWSMESG 224
Query: 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW 296
EHMP+K KFV ELARV AP GTII+VTWCHRDL+PSEESL P E+ELL KIC A+YLPAW
Sbjct: 225 EHMPNKEKFVGELARVAAPGGTIILVTWCHRDLSPSEESLTPEEKELLNKICKAFYLPAW 284
Query: 297 CSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTWKGFTSLLRTG 347
CSTADYVKLLQS SL+DIKA+DWS+NVAPFWPAVI SALTWKG TS+LR+G
Sbjct: 285 CSTADYVKLLQSNSLQDIKAQDWSENVAPFWPAVIKSALTWKGLTSVLRSG 335
|
Source: Solanum tuberosum Species: Solanum tuberosum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359807465|ref|NP_001240883.1| tocopherol O-methyltransferase, chloroplastic-like [Glycine max] gi|342330688|dbj|BAK57287.1| gamma-tocopherol methyltransferase [Glycine max] gi|342330694|dbj|BAK57290.1| gamma-tocopherol methyltransferase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 206/259 (79%), Positives = 237/259 (91%), Gaps = 1/259 (0%)
Query: 94 ELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGV-S 152
+L++GIAEFYDESS +WE+IWGDHMHHGFY+PDS+VSVSDHRAAQ+RMI+E+LRFA + S
Sbjct: 15 KLQKGIAEFYDESSGIWENIWGDHMHHGFYDPDSTVSVSDHRAAQIRMIQESLRFASLLS 74
Query: 153 EDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSF 212
E+P+K PK++VDVGCGIGGSSRYLAKKFGA GITLSPVQAQRAN+LAAA+GLADKVSF
Sbjct: 75 ENPSKWPKSIVDVGCGIGGSSRYLAKKFGATSVGITLSPVQAQRANSLAAAQGLADKVSF 134
Query: 213 QVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPS 272
+V DAL+QPFPDG+FDLVWSMESGEHMPDK+KFV ELARV AP GTIIIVTWCHRDL P
Sbjct: 135 EVADALKQPFPDGKFDLVWSMESGEHMPDKAKFVGELARVAAPGGTIIIVTWCHRDLGPD 194
Query: 273 EESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIH 332
E+SL PWEQ+LLKKICD+YYLPAWCST+DYVKLL+SLSL+DIK+ DWS VAPFWPAVI
Sbjct: 195 EQSLLPWEQDLLKKICDSYYLPAWCSTSDYVKLLESLSLQDIKSADWSPFVAPFWPAVIR 254
Query: 333 SALTWKGFTSLLRTGKLSI 351
+ALTW G TSLLR+G +I
Sbjct: 255 TALTWNGLTSLLRSGLKTI 273
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|347326940|gb|AEO80033.1| gamma tocopherol methyl transferase [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 204/267 (76%), Positives = 233/267 (87%)
Query: 81 TTSTTTMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVR 140
++S+ + +ELK+GIA+ YDESS + EDIWGDHMHHG+YEP SSV +SDHRAAQ+R
Sbjct: 63 SSSSVEVGIQNQQELKKGIADLYDESSGIREDIWGDHMHHGYYEPKSSVELSDHRAAQIR 122
Query: 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANAL 200
MIE+ L FA +SEDP K+P ++VDVGCGIGGSSRYLAKK+GA +GITLSPVQA+RA AL
Sbjct: 123 MIEQALSFAAISEDPAKKPTSIVDVGCGIGGSSRYLAKKYGATAKGITLSPVQAERAQAL 182
Query: 201 AAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTII 260
A A+GL DKVSFQV DAL QPFPDGQFDLVWSMESGEHMP+K KFV ELARV AP GTII
Sbjct: 183 ADAQGLGDKVSFQVADALNQPFPDGQFDLVWSMESGEHMPNKEKFVGELARVAAPGGTII 242
Query: 261 IVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWS 320
+VTWCHRDL+PSEESL P E+ELL KIC A+YLPAWCSTADYVKLLQS SL+DIKAEDWS
Sbjct: 243 LVTWCHRDLSPSEESLTPEEKELLNKICKAFYLPAWCSTADYVKLLQSNSLQDIKAEDWS 302
Query: 321 QNVAPFWPAVIHSALTWKGFTSLLRTG 347
+NVAPFWPAVI SALTWKGFTS+LR+G
Sbjct: 303 ENVAPFWPAVIKSALTWKGFTSVLRSG 329
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 379 | ||||||
| TAIR|locus:2010921 | 348 | G-TMT "gamma-tocopherol methyl | 0.770 | 0.839 | 0.640 | 1.7e-100 | |
| DICTYBASE|DDB_G0275359 | 462 | DDB_G0275359 [Dictyostelium di | 0.593 | 0.487 | 0.258 | 1e-19 | |
| UNIPROTKB|G4N2S6 | 340 | MGG_04901 "Methyltransferase" | 0.240 | 0.267 | 0.375 | 1.6e-17 | |
| UNIPROTKB|Q9KJ21 | 279 | Q9KJ21 "Sarcosine/dimethylglyc | 0.535 | 0.727 | 0.299 | 1e-14 | |
| UNIPROTKB|Q9KJ20 | 565 | Q9KJ20 "Glycine/sarcosine/dime | 0.530 | 0.355 | 0.278 | 3.7e-14 | |
| UNIPROTKB|Q5LR84 | 407 | SPO2245 "Conserved domain prot | 0.261 | 0.243 | 0.383 | 1.3e-13 | |
| TIGR_CMR|SPO_2245 | 407 | SPO_2245 "conserved domain pro | 0.261 | 0.243 | 0.383 | 1.3e-13 | |
| TAIR|locus:2012938 | 361 | SMT2 "sterol methyltransferase | 0.612 | 0.642 | 0.250 | 4.3e-11 | |
| TIGR_CMR|CPS_3306 | 273 | CPS_3306 "methyltransferase, U | 0.311 | 0.432 | 0.304 | 5e-11 | |
| UNIPROTKB|G5EGY9 | 380 | MGCH7_ch7g116 "Sterol 24-C-met | 0.559 | 0.557 | 0.245 | 6.5e-11 |
| TAIR|locus:2010921 G-TMT "gamma-tocopherol methyltransferase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 997 (356.0 bits), Expect = 1.7e-100, P = 1.7e-100
Identities = 189/295 (64%), Positives = 216/295 (73%)
Query: 60 RSSLLFGVSSFSRKLIXXXXXXXXXXXXXXXXXRELKEGIAEFYDESSSLWEDIWGDHMH 119
+SSLLF S S + L++GIAEFY+E+S LWE+IWGDHMH
Sbjct: 25 KSSLLFRSPSSSSSVSMTTTRGNVAVAAAATSTEALRKGIAEFYNETSGLWEEIWGDHMH 84
Query: 120 HGFYEPDSSVSVSD--HRAAQVRMIEETLRFAGVS-EDPTKRPKNVVDVGCGIGGSSRYL 176
HGFY+PDSSV +SD H+ AQ+RMIEE+LRFAGV+ E+ K+ K VVDVGCGIGGSSRYL
Sbjct: 85 HGFYDPDSSVQLSDSGHKEAQIRMIEESLRFAGVTDEEEEKKIKKVVDVGCGIGGSSRYL 144
Query: 177 AKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQPFPDGQFDLVWSMESG 236
A KFGA+C GITLSPV K SFQV DAL QPF DG+FDLVWSMESG
Sbjct: 145 ASKFGAECIGITLSPVQAKRANDLAAAQSLAHKASFQVADALDQPFEDGKFDLVWSMESG 204
Query: 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW 296
EHMPDK+KFV EL RV AP G IIIVTWCHR+L+ EE+LQPWEQ +L KIC +YLPAW
Sbjct: 205 EHMPDKAKFVKELVRVAAPGGRIIIVTWCHRNLSAGEEALQPWEQNILDKICKTFYLPAW 264
Query: 297 CSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTWKGFTSLLRTGKLSI 351
CST DYV LLQS SL+DIK DWS+NVAPFWPAVI +ALTWKG SLLR+G SI
Sbjct: 265 CSTDDYVNLLQSHSLQDIKCADWSENVAPFWPAVIRTALTWKGLVSLLRSGMKSI 319
|
|
| DICTYBASE|DDB_G0275359 DDB_G0275359 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 243 (90.6 bits), Expect = 1.0e-19, P = 1.0e-19
Identities = 63/244 (25%), Positives = 116/244 (47%)
Query: 99 IAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLR-FAGVSEDPTK 157
++++YD + ++ WG+H H ++ D+ + V+ +E ++ A +++D
Sbjct: 189 VSDYYDIVTETYQSGWGNHFHFAPFKTDT-----EPLETAVKRLEHSVADSARITKDSL- 242
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDA 217
V+DVGCG+GG + + + G K +G+ ++ D+ SF GDA
Sbjct: 243 ----VLDVGCGVGGPTLEICQYTGCKIRGLNINKKQVGIATQRAKDLGVSDRASFDHGDA 298
Query: 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQ 277
++ P+PD FD+V ES HMPDK F+ E RV P G + W + P+E+ +
Sbjct: 299 MKMPYPDNTFDVVTFFESTCHMPDKQAFIKECYRVLKPGGRMSGSEWLQCE-KPTEKDIV 357
Query: 278 PWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ--NVAPFWPAVIHSAL 335
+ ++ IC + +P S Y +++S A D +Q N+ W + + +
Sbjct: 358 ----QFIEPICAHHSVPHMGSLMSYRSMMESAGFYVHIAMDLTQEGNILRNWEVLDNKTI 413
Query: 336 -TWK 338
T+K
Sbjct: 414 NTFK 417
|
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| UNIPROTKB|G4N2S6 MGG_04901 "Methyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 180 (68.4 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 36/96 (37%), Positives = 55/96 (57%)
Query: 95 LKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSED 154
LK+ I YD +S + +WG H+HHG++ D S + AQ +I+ L + + E
Sbjct: 35 LKDRIKLHYDLASDYYLSLWGQHVHHGYWPTDESKAKDTKEVAQTNLIDLLLEISKIPEG 94
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLS 190
+ V+DVGCG+GG++R+LA K G GIT+S
Sbjct: 95 GS-----VLDVGCGLGGTTRHLASKLGCSVTGITIS 125
|
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| UNIPROTKB|Q9KJ21 Q9KJ21 "Sarcosine/dimethylglycine N-methyltransferase" [Halorhodospira halochloris (taxid:1052)] | Back alignment and assigned GO terms |
|---|
Score = 199 (75.1 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 68/227 (29%), Positives = 102/227 (44%)
Query: 97 EGIAEFY--DESSSLWEDIWG-DHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSE 153
E ++Y +++ + + IWG + +H G Y D ++D A R +E R + +S
Sbjct: 11 ETARQYYNSEDADNFYAIIWGGEDIHIGLYNDDEE-PIAD---ASRRTVE---RMSSLSR 63
Query: 154 DPTKRPKN-VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSF 212
P + V+D+G G GGS+RYLA K+G K + LS D +
Sbjct: 64 Q--LGPDSYVLDMGAGYGGSARYLAHKYGCKVAALNLSE-RENERDRQMNKEQGVDHLIE 120
Query: 213 QVGDALQQ-PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
V A + P+ DG FDLVWS +S H PD+ + + E +RV G I D P
Sbjct: 121 VVDAAFEDVPYDDGVFDLVWSQDSFLHSPDRERVLREASRVLRSGGEFIFTDPMQADDCP 180
Query: 272 SEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318
E +QP I D +L + Y + L+ L E+I ED
Sbjct: 181 -EGVIQP--------ILDRIHLETMGTPNFYRQTLRDLGFEEITFED 218
|
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| UNIPROTKB|Q9KJ20 Q9KJ20 "Glycine/sarcosine/dimethylglycine N-methyltransferase" [Actinopolyspora halophila (taxid:1850)] | Back alignment and assigned GO terms |
|---|
Score = 207 (77.9 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 63/226 (27%), Positives = 102/226 (45%)
Query: 101 EFY--DESSSLWEDIWGDH-MHHGFYE-PDSSVSVSDHRAAQVRMIEETLRFAG-VSEDP 155
++Y +++ + + +WG + +H G Y+ P ++ + R Q R AG V P
Sbjct: 303 DYYNSEDADNFYYHVWGGNDIHVGLYQTPQEDIATASERTVQ--------RMAGKVDISP 354
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVG 215
R ++D+G G GG++RYLA+ +G + LS V + G
Sbjct: 355 ETR---ILDLGAGYGGAARYLARTYGCHVTCLNLSEVENQRNREITRAEGLEHLIEVTDG 411
Query: 216 DALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEES 275
P+ D FD+VWS +S H D+S+ + E+ RV P G+++ D A E
Sbjct: 412 SFEDLPYQDNAFDVVWSQDSFLHSGDRSRVMEEVTRVLKPKGSVLFTDPMASDSAKKNE- 470
Query: 276 LQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321
L P I D +L + S Y K L L L++I+ ED S+
Sbjct: 471 LGP--------ILDRLHLDSLGSPGFYRKELTRLGLQNIEFEDLSE 508
|
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| UNIPROTKB|Q5LR84 SPO2245 "Conserved domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 196 (74.1 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 38/99 (38%), Positives = 53/99 (53%)
Query: 163 VDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQPF 222
+D+GCG+GG++RY A FG++ +GI L+P DKV+ V AL PF
Sbjct: 200 LDIGCGLGGAARYAAHSFGSQIEGIDLTPEYVETGGALCQWVGLSDKVNLSVASALSMPF 259
Query: 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261
G FD+ + M G ++ DK E+ARV P GT I
Sbjct: 260 ESGDFDIAYMMHVGMNIEDKRALFKEVARVLKPGGTFAI 298
|
|
| TIGR_CMR|SPO_2245 SPO_2245 "conserved domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 196 (74.1 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 38/99 (38%), Positives = 53/99 (53%)
Query: 163 VDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQPF 222
+D+GCG+GG++RY A FG++ +GI L+P DKV+ V AL PF
Sbjct: 200 LDIGCGLGGAARYAAHSFGSQIEGIDLTPEYVETGGALCQWVGLSDKVNLSVASALSMPF 259
Query: 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261
G FD+ + M G ++ DK E+ARV P GT I
Sbjct: 260 ESGDFDIAYMMHVGMNIEDKRALFKEVARVLKPGGTFAI 298
|
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| TAIR|locus:2012938 SMT2 "sterol methyltransferase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 177 (67.4 bits), Expect = 4.3e-11, P = 4.3e-11
Identities = 63/251 (25%), Positives = 101/251 (40%)
Query: 94 ELKEGIAEFYDESSSLWEDI----WGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFA 149
E E + +F D +L DI WG H + P S+ H+ A R+ EE
Sbjct: 65 ETAEKVPDFVDTFYNLVTDIYEWGWGQSFH---FSP--SIPGKSHKDA-TRLHEEM---- 114
Query: 150 GVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDK 209
V K + ++DVGCG+GG R +A A GIT++
Sbjct: 115 AVDLIQVKPGQKILDVGCGVGGPMRAIASHSRANVVGITINEYQVNRARLHNKKAGLDAL 174
Query: 210 VSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDL 269
G+ LQ PF D FD +S+E+ H P + +E+ RV P + W +
Sbjct: 175 CEVVCGNFLQMPFDDNSFDGAYSIEATCHAPKLEEVYAEIYRVLKPGSMYVSYEWVTTEK 234
Query: 270 APSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVA-PFWP 328
+E+ E+++ I LP + D + + + E +K +D + A P+W
Sbjct: 235 FKAEDDEHV---EVIQGIERGDALPGLRAYVDIAETAKKVGFEIVKEKDLASPPAEPWWT 291
Query: 329 AVIHSALT-WK 338
+ L W+
Sbjct: 292 RLKMGRLAYWR 302
|
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| TIGR_CMR|CPS_3306 CPS_3306 "methyltransferase, UbiE/COQ5 family" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 172 (65.6 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 38/125 (30%), Positives = 62/125 (49%)
Query: 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQ 220
+++DVGCG+GGS+R L+ + G GI LS +V F VG AL+
Sbjct: 64 HILDVGCGVGGSTRRLSHETGCHVTGIDLSDEYIDAAERLTQLLNMQARVKFNVGSALEL 123
Query: 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQ--- 277
P+ D FD WS++ ++ DK ++ E+ RV P ++ C + E+++
Sbjct: 124 PYADNTFDGAWSIQMNMNVEDKLGWLKEMYRVLKPGARAVLYEVCGHE----EKTIYFPV 179
Query: 278 PWEQE 282
PW Q+
Sbjct: 180 PWAQD 184
|
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| UNIPROTKB|G5EGY9 MGCH7_ch7g116 "Sterol 24-C-methyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 176 (67.0 bits), Expect = 6.5e-11, P = 6.5e-11
Identities = 57/232 (24%), Positives = 99/232 (42%)
Query: 102 FYDESSSLWEDIWGDHMHHGFYEPDSSV--SVSDHRAAQVRMIEETLRFAGVSEDPTKRP 159
+Y+ ++ ++E WG H + + S +++ H I G+ E T
Sbjct: 83 YYNLATDIYEYGWGQSFHFCRFSHNESFYQAIARHEHYLAHQI-------GIKEGMT--- 132
Query: 160 KNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQ 219
V+DVGCG+GG +R +AK G G+ + ++ F GD +Q
Sbjct: 133 --VLDVGCGVGGPAREIAKFTGCNVVGLNNNDYQIDRATHYAKQEKLDSQLQFVKGDFMQ 190
Query: 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPW 279
FPD FD V+++E+ H P SE+ RV P GT + W D ++L
Sbjct: 191 MSFPDESFDAVYAIEATVHAPKLEGVYSEIFRVLKPGGTFGVYEWLMTD-DYDNDNLH-- 247
Query: 280 EQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ--NVAP-FWP 328
+++ KI + ++ +++ E IK +D +Q + P +WP
Sbjct: 248 HRDIRLKIELGNGISNMVPISEGEAAMRAAGFEIIKTDDLAQKGDELPWYWP 299
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9ZSK1 | GTOMC_ARATH | 2, ., 1, ., 1, ., 9, 5 | 0.7307 | 0.6781 | 0.7385 | yes | no |
| Q6ZIK0 | GTOMC_ORYSJ | 2, ., 1, ., 1, ., 9, 5 | 0.7628 | 0.6675 | 0.6988 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.1.1.95 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.1.1 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00013955001 | SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (345 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00032449001 | SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (502 aa) | • | • | • | • | • | 0.989 | |||
 | GSVIVG00025454001 | SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (323 aa) | • | • | • | 0.537 | |||||
 | GSVIVG00032719001 | SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (373 aa) | • | • | • | 0.420 | |||||
 | HGGT | SubName- Full=Chromosome chr11 scaffold_56, whole genome shotgun sequence; (445 aa) | • | • | • | 0.414 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 379 | |||
| PLN02244 | 340 | PLN02244, PLN02244, tocopherol O-methyltransferase | 0.0 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 5e-25 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 8e-20 | |
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 7e-17 | |
| PLN02336 | 475 | PLN02336, PLN02336, phosphoethanolamine N-methyltr | 4e-16 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 4e-16 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 6e-15 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 1e-14 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 7e-14 | |
| PTZ00098 | 263 | PTZ00098, PTZ00098, phosphoethanolamine N-methyltr | 1e-13 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 8e-12 | |
| pfam02353 | 273 | pfam02353, CMAS, Mycolic acid cyclopropane synthet | 2e-11 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 3e-11 | |
| PRK10258 | 251 | PRK10258, PRK10258, biotin biosynthesis protein Bi | 4e-11 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 1e-10 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 2e-10 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 5e-10 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 9e-10 | |
| smart00828 | 224 | smart00828, PKS_MT, Methyltransferase in polyketid | 1e-09 | |
| TIGR02021 | 219 | TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m | 1e-09 | |
| TIGR01983 | 224 | TIGR01983, UbiG, ubiquinone biosynthesis O-methylt | 1e-09 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 2e-09 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 4e-09 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 5e-09 | |
| COG4106 | 257 | COG4106, Tam, Trans-aconitate methyltransferase [G | 2e-08 | |
| PRK05134 | 233 | PRK05134, PRK05134, bifunctional 3-demethylubiquin | 3e-08 | |
| PRK07580 | 230 | PRK07580, PRK07580, Mg-protoporphyrin IX methyl tr | 7e-07 | |
| TIGR02752 | 231 | TIGR02752, MenG_heptapren, demethylmenaquinone met | 4e-06 | |
| PRK11705 | 383 | PRK11705, PRK11705, cyclopropane fatty acyl phosph | 5e-06 | |
| PLN02233 | 261 | PLN02233, PLN02233, ubiquinone biosynthesis methyl | 1e-05 | |
| pfam01209 | 233 | pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf | 1e-05 | |
| PRK09328 | 275 | PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth | 7e-05 | |
| COG4123 | 248 | COG4123, COG4123, Predicted O-methyltransferase [G | 1e-04 | |
| PRK11088 | 272 | PRK11088, rrmA, 23S rRNA methyltransferase A; Prov | 2e-04 | |
| pfam12147 | 311 | pfam12147, Methyltransf_20, Putative methyltransfe | 2e-04 | |
| COG2265 | 432 | COG2265, TrmA, SAM-dependent methyltransferases re | 3e-04 | |
| TIGR03534 | 251 | TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met | 0.001 | |
| PRK05785 | 226 | PRK05785, PRK05785, hypothetical protein; Provisio | 0.001 | |
| COG4122 | 219 | COG4122, COG4122, Predicted O-methyltransferase [G | 0.001 | |
| pfam13679 | 143 | pfam13679, Methyltransf_32, Methyltransferase doma | 0.002 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 0.002 | |
| PLN02396 | 322 | PLN02396, PLN02396, hexaprenyldihydroxybenzoate me | 0.003 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 0.003 | |
| PRK14103 | 255 | PRK14103, PRK14103, trans-aconitate 2-methyltransf | 0.003 | |
| PLN02490 | 340 | PLN02490, PLN02490, MPBQ/MSBQ methyltransferase | 0.003 | |
| COG0030 | 259 | COG0030, KsgA, Dimethyladenosine transferase (rRNA | 0.004 |
| >gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Score = 524 bits (1352), Expect = 0.0
Identities = 203/317 (64%), Positives = 237/317 (74%), Gaps = 13/317 (4%)
Query: 41 MSACLRPSLLPAPPPAPTWRSSLLFGVSSFSRKLITRASSTTSTTTMSDAAAR------E 94
+A L + A T RS + SR + + + + DAA+ +
Sbjct: 2 PAAALASR---SSSSATTSRSG--SRSTRLSRPSSSASGVRRTLARLEDAASPAPAATAD 56
Query: 95 LKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSED 154
LKEGIAEFYDESS +WED+WG+HMHHG+Y+P +S DHR AQ+RMIEE+L +AGV +D
Sbjct: 57 LKEGIAEFYDESSGVWEDVWGEHMHHGYYDPGASRG--DHRQAQIRMIEESLAWAGVPDD 114
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
KRPK +VDVGCGIGGSSRYLA+K+GA +GITLSPVQA RANALAAA+GL+DKVSFQV
Sbjct: 115 DEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQV 174
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE 274
DAL QPF DGQFDLVWSMESGEHMPDK KFV ELARV AP G IIIVTWCHRDL P E
Sbjct: 175 ADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGET 234
Query: 275 SLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSA 334
SL+P EQ+LL KIC AYYLPAWCST+DYVKL +SL L+DIK EDWS++VAPFWPAVI SA
Sbjct: 235 SLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEHVAPFWPAVIKSA 294
Query: 335 LTWKGFTSLLRTGKLSI 351
LT KG LL +G +I
Sbjct: 295 LTLKGLFGLLTSGWATI 311
|
Length = 340 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 5e-25
Identities = 38/99 (38%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 163 VDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222
+DVGCG G + LA++ GA+ G+ LSP A F VGDA PF
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARK-------RAPRKFVVGDAEDLPF 53
Query: 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261
PD FD+V S H+PD + + E+ARV P G ++I
Sbjct: 54 PDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 8e-20
Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAA 202
T V V+DVGCG G +R LA++ G + + + + +A A A
Sbjct: 9 ARTFELLAVQPGDR-----VLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER 63
Query: 203 ARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262
A GL V F GDA PFPDG FD V S +H+ D ++ ++E+ARV P G ++++
Sbjct: 64 AAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVL 123
|
Length = 241 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 7e-17
Identities = 56/240 (23%), Positives = 97/240 (40%), Gaps = 31/240 (12%)
Query: 96 KEGIAEFYDESSSLWEDIWGDHMHH--GFYE-PDSSVSVSDHRAAQVRMIEETLRFAGVS 152
E I YD S+ + M + ++E PD ++ AQ ++ L G+
Sbjct: 17 AENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLE-----EAQRAKLDLILEKLGL- 70
Query: 153 EDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSF 212
P ++D+GCG GG + Y A+++G G+TLS Q A AARGL D V
Sbjct: 71 -KPGMT---LLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEV 126
Query: 213 QVGDALQQPFPDGQFDLVWSMESGEHMPDKS--KFVSELARVTAPAGTIIIVTWCHRDLA 270
++ D + FD + S+ EH+ ++ F ++ + P G +++ + D
Sbjct: 127 RLQD---YRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD-- 181
Query: 271 PSEESLQPWEQELLKKICDAYYLPA------WCSTADY-VKLLQSLSLEDIK-AEDWSQN 322
+ + K I LP+ S A + V ++SL + W +
Sbjct: 182 QEFRRFPDF---IDKYIFPGGELPSISEILELASEAGFVVLDVESLRPHYARTLRLWRER 238
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Length = 283 |
| >gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 4e-16
Identities = 45/137 (32%), Positives = 65/137 (47%), Gaps = 12/137 (8%)
Query: 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRAN--- 198
+E T F V + K + V+DVGCGIGG Y+A+ F GI LS N
Sbjct: 252 LETTKEF--VDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLS------VNMIS 303
Query: 199 -ALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAG 257
AL A G V F+V D ++ +PD FD+++S ++ H+ DK + P G
Sbjct: 304 FALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGG 363
Query: 258 TIIIVTWCHRDLAPSEE 274
++I +C PS E
Sbjct: 364 KVLISDYCRSPGTPSPE 380
|
Length = 475 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 4e-16
Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQ--GITLSPVQAQRANALAAARGLADKVSFQV 214
K V+D+GCG G + LA+K G + GI +S ++A A G + V F
Sbjct: 2 KSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGY-ENVEFIQ 60
Query: 215 GDALQQP---FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263
GD + P D FD+V S E H+PD K + E+ RV P G +I+
Sbjct: 61 GDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSD 112
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 6e-15
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ- 219
V+D+GCG G + LA GA+ G+ +SPV + A AAA LAD V GDA +
Sbjct: 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARK-AAAALLADNVEVLKGDAEEL 59
Query: 220 QPFPDGQFDLVWSMESGEH-MPDKSKFVSELARVTAPAGTIIIVTW 264
P D FD++ S H + D ++F+ E R+ P G +++
Sbjct: 60 PPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTLV 105
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 1e-14
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 26/144 (18%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADK-----V 210
K V+DV CG G + LAK G + G+ +S + L AR K V
Sbjct: 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISE------SMLEVAREKLKKKGVQNV 103
Query: 211 SFQVGDALQQPFPDGQFDLVWSMESG-EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDL 269
F VGDA PFPD FD V ++ G ++ D K + E+ RV P G ++++
Sbjct: 104 EFVVGDAENLPFPDNSFDAV-TISFGLRNVTDIDKALKEMYRVLKPGGRLLVL------- 155
Query: 270 APSEESLQPWEQELLKKICDAYYL 293
E +P + +L+K YY
Sbjct: 156 ----EFSKP-DNPVLRKAYILYYF 174
|
Length = 238 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 7e-14
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
V+D+GCG G + LA+ F GA+ G+ LSP + A A L +++F GD
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARE-NAKLALGPRITFVQGD 59
Query: 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263
A FD V+ G + + + LA + P G +++
Sbjct: 60 APDALDLLEGFDAVFIGGGGGDLLE---LLDALASLLKPGGRLVLNA 103
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 1e-13
Identities = 39/161 (24%), Positives = 80/161 (49%), Gaps = 14/161 (8%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221
V+D+G G+GG +Y+ +K+GA G+ + A + + +K+ F+ D L++
Sbjct: 56 VLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK---NKIEFEANDILKKD 112
Query: 222 FPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPW 279
FP+ FD+++S ++ H+ DK K + + P G ++I +C + ++ W
Sbjct: 113 FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC-------ADKIENW 165
Query: 280 EQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWS 320
++E I Y +Y L++S + +++ A+D S
Sbjct: 166 DEEFKAYIKKRKY--TLIPIQEYGDLIKSCNFQNVVAKDIS 204
|
Length = 263 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 8e-12
Identities = 32/137 (23%), Positives = 50/137 (36%), Gaps = 20/137 (14%)
Query: 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQ 193
R + + R K V+D+GCG G R L ++ G G+ SP
Sbjct: 2 RRQRERFLARLLARLL----PRLKPGGRVLDIGCGTGILLRLLRER-GFDVTGVDPSPAA 56
Query: 194 AQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVT 253
+ DA G++DL+ + E EH+PD + +L +
Sbjct: 57 VLIFSLF---------------DAPDPAVLAGKYDLITAFEVLEHLPDPPALLQQLRELL 101
Query: 254 APAGTIIIVTWCHRDLA 270
P G ++I T D A
Sbjct: 102 KPGGVLLISTPLADDDA 118
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|216988 pfam02353, CMAS, Mycolic acid cyclopropane synthetase | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 2e-11
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 12/148 (8%)
Query: 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQ 195
AQ ++ L G+ T ++D+GCG GG R A+++ G+TLS Q +
Sbjct: 45 EAQQAKLDLILDKLGLKPGMT-----LLDIGCGWGGLMRRAAERYDVNVVGLTLSKNQYK 99
Query: 196 RANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKS--KFVSELARVT 253
A AA GL KV + D D FD + S+ EH+ ++ F +L +
Sbjct: 100 HARQRVAAEGLQRKVEVLLQDYRDF---DEPFDRIVSVGMFEHVGHENYDTFFKKLYNLL 156
Query: 254 APAGTIII--VTWCHRDLAPSEESLQPW 279
P G +++ +T H D +
Sbjct: 157 PPGGLMLLHTITGLHPDETSERGLPLKF 184
|
This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyze the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <=> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. Length = 273 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 3e-11
Identities = 44/142 (30%), Positives = 62/142 (43%), Gaps = 24/142 (16%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR------GLADKV 210
+ V+D+ CG G + LAK G + + L + LA R GL+ V
Sbjct: 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGM----LAVGREKLRDLGLSGNV 105
Query: 211 SFQVGDALQQPFPDGQFDLVWSMESG-EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDL 269
F GDA PFPD FD V ++ G ++PD K + E+ RV P G ++I+
Sbjct: 106 EFVQGDAEALPFPDNSFDAV-TIAFGLRNVPDIDKALREMYRVLKPGGRLVIL------- 157
Query: 270 APSEESLQPWEQELLKKICDAY 291
E +P LKK D Y
Sbjct: 158 ----EFSKP-TNPPLKKAYDFY 174
|
Length = 239 |
| >gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 4e-11
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSP---VQAQRANALAAARGLADKVS 211
P ++ +V+D GCG G SRY ++ G++ + LSP QA++ +A AD
Sbjct: 39 PQRKFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA-------ADH-- 88
Query: 212 FQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
+ GD P FDL WS + + + S + EL RV P G + T L
Sbjct: 89 YLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLP- 147
Query: 272 SEESLQPWE 280
E Q W+
Sbjct: 148 --ELHQAWQ 154
|
Length = 251 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 1e-10
Identities = 43/163 (26%), Positives = 62/163 (38%), Gaps = 37/163 (22%)
Query: 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPV 192
R V++I + + V+DV CG G + LAK K G+ S
Sbjct: 28 RRRAVKLIGV------------FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSS- 74
Query: 193 QAQRANALAAARG---LADKVSFQVGDALQQPFPDGQFDLVWSMESG-EHMPDKSKFVSE 248
L A+ L + F DA PF D FD V ++ G ++ D K + E
Sbjct: 75 -----EMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAV-TIAFGLRNVTDIQKALRE 128
Query: 249 LARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY 291
+ RV P G ++I+ E +P LLKK Y
Sbjct: 129 MYRVLKPGGRLVIL-----------EFSKP-ANALLKKFYKFY 159
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-10
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221
++D+GCG G R LA+ + G+ +S + A +G KV F V DA P
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGP--KVRFVVADARDLP 58
Query: 222 FPDGQFDLVWSMESG-EHMPDKS--KFVSELARVTAPAG 257
F +G FDLV +++ K + E AR+ P G
Sbjct: 59 FEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 5e-10
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 159 PKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217
V+D G G G A+ A+ G+ L P A A A GLA +V VGDA
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60
Query: 218 LQ-QPFPDGQFDLV-----WSMESGEHMPDKS---KFVSELARVTAPAGTIIIVTW 264
+ PDG FDLV + +G+ ++ +F++ R+ P G ++++T
Sbjct: 61 RELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVVITP 116
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 58.4 bits (138), Expect = 9e-10
Identities = 41/167 (24%), Positives = 61/167 (36%), Gaps = 6/167 (3%)
Query: 154 DPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADK-VSF 212
V+D+GCG G + LA+ G + + A A A A G V F
Sbjct: 44 RLLPGGLGVLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDF 102
Query: 213 QVGDALQQ--PFPDG-QFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDL 269
V DAL PF D FDLV S+ H+ +K + EL RV P G +++ L
Sbjct: 103 VVADALGGVLPFEDSASFDLVISL-LVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDGL 161
Query: 270 APSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316
+ + + + D + + L + L L
Sbjct: 162 LEGRLAALLGFGDPVLERGDILLELEALLRLELLDLEELLGLLGELE 208
|
Length = 257 |
| >gnl|CDD|214839 smart00828, PKS_MT, Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 1e-09
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 160 KNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218
K V+D GCG G LA++ + G T+SP QA+ A GL ++ D+
Sbjct: 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSA 60
Query: 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELAR 251
+ PFPD +DLV+ E H+ DK S ++R
Sbjct: 61 KDPFPD-TYDLVFGFEVIHHIKDKMDLFSNISR 92
|
Length = 224 |
| >gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-09
Identities = 46/169 (27%), Positives = 69/169 (40%), Gaps = 16/169 (9%)
Query: 96 KEGIAEFYD-ESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSED 154
KE + ++D + W I+G +P S V R + M + L + +
Sbjct: 2 KEQVRHYFDGTAFQRWARIYGSG------DPVSRVR-QTVREGRAAMRRKLLDWLP-KDP 53
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
K V+D GCG G S LAK+ GA + + +S Q A A R +A V F+V
Sbjct: 54 LKG--KRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEV 110
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263
D L G+FD+V M+ H P L + + +I T
Sbjct: 111 NDLLSL---CGEFDIVVCMDVLIHYPAS-DMAKALGHLASLTKERVIFT 155
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219 |
| >gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-09
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 9/133 (6%)
Query: 134 HRAAQVRM--IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSP 191
H+ +R+ I +T+R ++ P V+DVGCG G S LA+ GA GI S
Sbjct: 23 HKMNPLRLDYIRDTIR---KNKKPLF-GLRVLDVGCGGGLLSEPLARL-GANVTGIDASE 77
Query: 192 VQAQRANALAAARGLADKVSFQVGDALQ-QPFPDGQFDLVWSMESGEHMPDKSKFVSELA 250
+ A A L K+ ++ FD+V ME EH+PD F+ A
Sbjct: 78 ENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACA 136
Query: 251 RVTAPAGTIIIVT 263
++ P G + T
Sbjct: 137 QLLKPGGILFFST 149
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 2e-09
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 163 VDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGL--ADKVSFQVGDALQ 219
+D+GCG G R L + G + G+ +SP + A AA GL A +V V DA+
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60
Query: 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTI 259
G FD+V + H+ D + L R+ P G +
Sbjct: 61 LDP--GSFDVVVASNVLHHLADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 4e-09
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 160 KNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219
V+DVGCG G S LA+ GA GI S + A A G+ + ++
Sbjct: 61 LRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVED 117
Query: 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
GQFD+V ME EH+PD F+ A++ P G + + T +R L
Sbjct: 118 LASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLST-INRTLKA 168
|
Length = 243 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 5e-09
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQVGD 216
P +V+D+GCG G +R L K+F + + I S +A + V F GD
Sbjct: 35 PASVLDIGCGTGYLTRALLKRF-PQAEFIANDISAGMLAQAKTKLSEN-----VQFICGD 88
Query: 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266
A + P D FDL+ S + + D S+ +SELARV P G + T+
Sbjct: 89 AEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGP 138
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|226591 COG4106, Tam, Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 2e-08
Identities = 55/203 (27%), Positives = 85/203 (41%), Gaps = 33/203 (16%)
Query: 123 YEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-G 181
+ PD + D R R + ++ P +RP+ VVD+GCG G S+ LA+++
Sbjct: 3 WNPDQYLQFEDERTRPARDL--------LARVPLERPRRVVDLGCGPGNSTELLARRWPD 54
Query: 182 AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD 241
A GI SP LA A +F+ D L+ P+ DL+++ + +PD
Sbjct: 55 AVITGIDSSP------AMLAKAAQRLPDATFEEAD-LRTWKPEQPTDLLFANAVLQWLPD 107
Query: 242 KSKFVSELARVTAPAGTIII------VTWCH---RDLAPSEESLQPWEQELLKKICDAYY 292
+ + L AP G + + H R+ A P+ QEL +
Sbjct: 108 HPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEA----PFAQELGGRGLTRAP 163
Query: 293 LPAWCSTADYVKLLQSLSLE-DI 314
LP S A Y +LL L+ DI
Sbjct: 164 LP---SPAAYYELLAPLACRVDI 183
|
Length = 257 |
| >gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 3e-08
Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 14/110 (12%)
Query: 160 KNVVDVGCGIGGSSRYLAKKFGAKCQGITLS--PVQAQRANALAAARGLADKVSFQVGD- 216
K V+DVGCG G S +A+ GA GI S ++ R +AL + GL K+ ++
Sbjct: 50 KRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALES--GL--KIDYRQTTA 104
Query: 217 ---ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263
A + P GQFD+V ME EH+PD + FV A++ P G + T
Sbjct: 105 EELAAEHP---GQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFST 151
|
Length = 233 |
| >gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 7e-07
Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 20/148 (13%)
Query: 110 WEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGI 169
W I+ D P S V + RA RM + L + D T ++D GCG+
Sbjct: 25 WARIYSD-------APVSKVR-ATVRAGHQRMRDTVLSWLPADGDLT--GLRILDAGCGV 74
Query: 170 GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD--ALQQPFPDGQF 227
G S LA++ GAK +SP + A A GLA ++F+VGD +L G+F
Sbjct: 75 GSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLL-----GRF 128
Query: 228 DLVWSMESGEHMP--DKSKFVSELARVT 253
D V ++ H P D ++ ++ LA +T
Sbjct: 129 DTVVCLDVLIHYPQEDAARMLAHLASLT 156
|
Length = 230 |
| >gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 4e-06
Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 12/137 (8%)
Query: 126 DSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AK 183
+S +S H+ + ++T++ V + +DV CG S LA+ G
Sbjct: 22 NSVISFQRHKKWR----KDTMKRMNVQAG-----TSALDVCCGTADWSIALAEAVGPEGH 72
Query: 184 CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKS 243
G+ S GL V G+A++ PF D FD V ++PD
Sbjct: 73 VIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYM 131
Query: 244 KFVSELARVTAPAGTII 260
+ + E+ RV P G ++
Sbjct: 132 QVLREMYRVVKPGGKVV 148
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231 |
| >gnl|CDD|183282 PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 5e-06
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 11/80 (13%)
Query: 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR--GLADKVSFQVGDAL 218
V+D+GCG GG +RY A+ +G G+T+S Q LA R GL V ++ D
Sbjct: 170 RVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQ----KLAQERCAGLP--VEIRLQDYR 223
Query: 219 QQPFPDGQFDLVWSMESGEH 238
+GQFD + S+ EH
Sbjct: 224 DL---NGQFDRIVSVGMFEH 240
|
Length = 383 |
| >gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-05
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 151 VSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGA--KCQGITLSPVQAQRANALAA--ARGL 206
VS K V+D+ CG G + L++K G+ K G+ S Q A + A+
Sbjct: 66 VSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSC 125
Query: 207 ADKVSFQVGDALQQPFPDGQFDLVWSMESG-EHMPDKSKFVSELARVTAPAGTIIIVTWC 265
+ + GDA PF D FD + +M G ++ D+ K + E+ RV P + I+ +
Sbjct: 126 YKNIEWIEGDATDLPFDDCYFDAI-TMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDF- 183
Query: 266 HRDLAPSEESLQPW 279
++ P S+Q W
Sbjct: 184 NKSTQPFTTSMQEW 197
|
Length = 261 |
| >gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 3/125 (2%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGA--KCQGITLSPVQAQRANALAAARGLADKVSFQV 214
KR +DV G G + L+ G+ K G+ ++ + A G + + F
Sbjct: 46 KRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYN-IEFLQ 104
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE 274
G+A + PF D FD+V + PD K + E RV P G ++ + + + +
Sbjct: 105 GNAEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVVCLEFSKPENPLLSQ 164
Query: 275 SLQPW 279
+ + +
Sbjct: 165 AYELY 169
|
Length = 233 |
| >gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 7e-05
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 19/96 (19%)
Query: 144 ETLRFAGVSEDPTKRPKNVVDVGCG---IGGSSRYLAKKF-GAKCQGITLSPVQAQRANA 199
E L + K P V+D+G G I + LAK+ A+ + +SP A
Sbjct: 94 EELVEWALEALLLKEPLRVLDLGTGSGAIALA---LAKERPDAEVTAVDISP------EA 144
Query: 200 LA-----AARGLADKVSFQVGDALQQPFPDGQFDLV 230
LA A GL +V F GD +P P G+FDL+
Sbjct: 145 LAVARRNAKHGLGARVEFLQGDWF-EPLPGGRFDLI 179
|
Length = 275 |
| >gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 41/167 (24%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQ 213
P + ++D+G G G LA++ AK G+ + A+ A A L +++
Sbjct: 41 PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVI 100
Query: 214 VGD--ALQQPFPDGQFDLVWS----MESGEHM-PDKSKFVSELARVTA------------ 254
D + FDL+ + G + + + +AR
Sbjct: 101 EADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLR---AIARHEITLDLEDLIRAAA 157
Query: 255 ----PAGTIIIVTWCHRDLAPSEESLQPWEQEL------LKKICDAY 291
P G + V HR E L + L K+I Y
Sbjct: 158 KLLKPGGRLAFV---HR-----PERLAEIIELLKSYNLEPKRIQFVY 196
|
Length = 248 |
| >gnl|CDD|236841 PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 17/109 (15%)
Query: 159 PKNVVDVGCGIG-GSSRY---LAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
++D+GCG G + L + + G+ +S V A + AA R +V+F V
Sbjct: 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKV-AIKY---AAKR--YPQVTFCV 139
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263
+ + PF D D + + + P K ELARV P G +I VT
Sbjct: 140 ASSHRLPFADQSLDAIIRI----YAPCK---AEELARVVKPGGIVITVT 181
|
Length = 272 |
| >gnl|CDD|152582 pfam12147, Methyltransf_20, Putative methyltransferase | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQG---ITL---SPVQAQ 195
+EE LR+A + RP ++D+ G G RY+ Q I L SP+ +
Sbjct: 119 LEELLRYAIARLRASGRPVRILDIAAGHG---RYVLDALAKAPQRPDSILLRDYSPLNVE 175
Query: 196 RANALAAARGLADKVSFQVGDA 217
+ AL A RGL D F+ GDA
Sbjct: 176 QGRALIAERGLEDIARFEQGDA 197
|
This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The family shows homology to methyltransferases. Length = 311 |
| >gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 20/122 (16%)
Query: 120 HGFYEPDSSVSVSD------HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSS 173
S +S + A ++ E L + ++ V+D+ CG+G
Sbjct: 254 LESIREGVSFQISPRSFFQVNPAVAEKLYETALEWLELAGGER-----VLDLYCGVGTFG 308
Query: 174 RYLAKKFGAKCQGITLSP--VQAQRANALAAARGLADKVSFQVGDA---LQQPFPDGQFD 228
LAK+ K G+ +SP V+A + N AAA G+ D V F GDA + + D
Sbjct: 309 LPLAKRV-KKVHGVEISPEAVEAAQEN--AAANGI-DNVEFIAGDAEEFTPAWWEGYKPD 364
Query: 229 LV 230
+V
Sbjct: 365 VV 366
|
Length = 432 |
| >gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.001
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 157 KRPKNVVDVGCG---IGGSSRYLAKKF-GAKCQGITLSP--VQAQRANALAAARGLADKV 210
K P V+D+G G I + LAK+ A+ + +SP + R N AAR D V
Sbjct: 86 KGPLRVLDLGTGSGAIALA---LAKERPDARVTAVDISPEALAVARKN---AARLGLDNV 139
Query: 211 SFQVGDALQQPFPDGQFDLV 230
F D +P P G+FDL+
Sbjct: 140 EFLQSDWF-EPLPGGKFDLI 158
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251 |
| >gnl|CDD|235607 PRK05785, PRK05785, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.001
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
RPK V+DV G G S + K F + + N L DKV VG
Sbjct: 50 GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAE------NMLKMNLVADDKV---VGS 100
Query: 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARV 252
PF D FD+V S + + K ++E RV
Sbjct: 101 FEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRV 136
|
Length = 226 |
| >gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 28/171 (16%)
Query: 107 SSLWEDIWGDHMH-HGFYEPDSSVSVSDHRAAQV---RMIEETLRF----AGVSEDPTKR 158
++ ED++ D++ EP + ++ + A + + ET A
Sbjct: 6 PNMDEDLY-DYLEALIPGEPPALLAELEEFARENGVPIIDPETGALLRLLAR-----LSG 59
Query: 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQV-G 215
PK ++++G IG S+ ++A + T+ +A+ A A G+ D++ + G
Sbjct: 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGG 119
Query: 216 DALQQ--PFPDGQFDLVWSMESGEHMPDKSK---FVSELARVTAPAGTIII 261
DAL DG FDLV+ + DK+ ++ + P G I+
Sbjct: 120 DALDVLSRLLDGSFDLVF----IDA--DKADYPEYLERALPLLRPGGLIVA 164
|
Length = 219 |
| >gnl|CDD|222313 pfam13679, Methyltransf_32, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.002
Identities = 21/82 (25%), Positives = 28/82 (34%), Gaps = 8/82 (9%)
Query: 157 KRPKNVVDVGCGIGGSSR---YLAKKFGAKCQ--GITLSPVQAQRANALAAARGLADKVS 211
VVD G G G YL K + GI ++ANA A G ++S
Sbjct: 24 TGCITVVDHGAGKGYLGFILYYLLFKRKYGVRVVGIDARAELVEKANARAQKLGFNKRMS 83
Query: 212 F---QVGDALQQPFPDGQFDLV 230
F + A D+V
Sbjct: 84 FLEGTIAGATVSARLPDPVDVV 105
|
This family appears to be a methyltransferase domain. Length = 143 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.002
Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 24/125 (19%)
Query: 160 KNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDAL 218
V++VG G G + AK G K G+ ++P + A A + + V D L
Sbjct: 25 DRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSD-L 82
Query: 219 QQPFPDGQFDLV-----WSMESGEHMPDK----------------SKFVSELARVTAPAG 257
+PF +FD++ + E D +F+ E+ R P G
Sbjct: 83 FEPFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGG 142
Query: 258 TIIIV 262
I+++
Sbjct: 143 RILLL 147
|
Length = 188 |
| >gnl|CDD|178018 PLN02396, PLN02396, hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Score = 38.9 bits (90), Expect = 0.003
Identities = 55/245 (22%), Positives = 101/245 (41%), Gaps = 40/245 (16%)
Query: 32 KRLSDIQSEMSACL---RPSLLPAPPPAPTWRSSLLFGVSSFSRKLITRASSTTSTTTMS 88
+RLS + + L R + SS + + K ++ ST++TT+++
Sbjct: 18 RRLSSSRIIPPSRLLHQRLFSTSDTDDSAASFSSSHPKMQTLEGKASNKSRSTSTTTSLN 77
Query: 89 DAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRF 148
++ +A+F + + W G ++P + ++ I TL
Sbjct: 78 -------EDELAKFSAIADTWWHS-------EGPFKP-----LHQMNPTRLAFIRSTL-C 117
Query: 149 AGVSEDPT-KRP---KNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204
S+DP+ +P +D+GCG G S LA+ G T++ V A N + AR
Sbjct: 118 RHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLAR------MGATVTGVDAVDKN-VKIAR 170
Query: 205 GLAD------KVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGT 258
AD + + A + +FD V S+E EH+ + ++F L+ +T P G
Sbjct: 171 LHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGA 230
Query: 259 IIIVT 263
++ T
Sbjct: 231 TVLST 235
|
Length = 322 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.003
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 11/81 (13%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG-----LADK 209
P V+D+GCG G L + + ++ V A AL +AR +
Sbjct: 28 PKPLGGKVLDLGCGYG----VLGAALAKRSPDLEVTMVDIN-ARALESARANLAANGLEN 82
Query: 210 VSFQVGDALQQPFPDGQFDLV 230
D G+FDL+
Sbjct: 83 GEVFWSDLYSAV-EPGKFDLI 102
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|184509 PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.003
Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 34/146 (23%)
Query: 123 YEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-G 181
++PD ++ +DHR R + L + +R + VVD+GCG G +RYLA+++ G
Sbjct: 2 WDPDVYLAFADHRG---RPFYDLL-----ARVGAERARRVVDLGCGPGNLTRYLARRWPG 53
Query: 182 AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPFPDGQFDLV-------WSM 233
A + + SP +AAAR V + GD +P PD D+V W
Sbjct: 54 AVIEALDSSP------EMVAAARE--RGVDARTGDVRDWKPKPD--TDVVVSNAALQWVP 103
Query: 234 ESGEHMPDKSKFVSELARVTAPAGTI 259
E + + ++V EL AP I
Sbjct: 104 EHADLLV---RWVDEL----APGSWI 122
|
Length = 255 |
| >gnl|CDD|215270 PLN02490, PLN02490, MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.003
Identities = 56/195 (28%), Positives = 73/195 (37%), Gaps = 37/195 (18%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITL---SPVQAQRANALAAARGLADKVSFQVGDAL 218
VVDVG G G ++ + K AK +T+ SP Q +A + GDA
Sbjct: 117 VVDVGGGTGFTTLGIVKHVDAK--NVTILDQSPHQLAKAKQKEPLKE----CKIIEGDAE 170
Query: 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT------WCHRDLA-- 270
PFP D S S E+ PD + + E RV G ++ W R A
Sbjct: 171 DLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADV 230
Query: 271 ----PSEESLQPWEQEL------LKKICDAYY-------LPAWCSTADYVKLLQSLSLED 313
P EE W + LK+I +Y L CS VK S
Sbjct: 231 WMLFPKEEEYIEWFTKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTG-VKPASGDSPLQ 289
Query: 314 I--KAEDWSQNVAPF 326
+ KAED S+ V PF
Sbjct: 290 LGPKAEDVSKPVNPF 304
|
Length = 340 |
| >gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.004
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALA 201
I++ + A +S NV+++G G+G + L ++ A+ I + + A L
Sbjct: 19 IDKIVEAANISPG-----DNVLEIGPGLGALTEPLLER-AARVTAIEIDR---RLAEVLK 69
Query: 202 AARGLADKVSFQVGDALQQPFPD-GQFDLV 230
D ++ GDAL+ FP Q V
Sbjct: 70 ERFAPYDNLTVINGDALKFDFPSLAQPYKV 99
|
Length = 259 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 379 | |||
| PLN02244 | 340 | tocopherol O-methyltransferase | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.95 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.95 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.95 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.94 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.92 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.91 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.9 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.9 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.89 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.89 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.88 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.87 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.85 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.85 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.85 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.85 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.85 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.84 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.84 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.84 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.83 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.82 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.82 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.81 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.81 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.81 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.81 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.8 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.8 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.8 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.8 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.78 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.78 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.77 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.77 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.76 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.75 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.74 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.73 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.73 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.73 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.72 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.71 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.71 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.71 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.7 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.7 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.69 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.68 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.67 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.67 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.67 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.67 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.67 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.65 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.65 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.65 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.64 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.64 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.64 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.64 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.64 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.63 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.62 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.62 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.62 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.61 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.61 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.61 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.6 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.6 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.6 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.6 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.6 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.59 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.59 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.59 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.58 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.58 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.58 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.57 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.56 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.55 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.54 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.53 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.51 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.51 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.51 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.5 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.5 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.5 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.5 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.49 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.49 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.48 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.47 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.46 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.46 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.46 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.46 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.45 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.45 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.44 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.44 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.43 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.42 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.42 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.4 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.4 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.39 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.39 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.39 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.37 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.35 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.34 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 99.34 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.34 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.33 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.32 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.32 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.32 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.31 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.3 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.28 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.28 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.28 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.27 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.27 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.27 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.27 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.27 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.26 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.26 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.26 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.25 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.25 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.24 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.22 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.21 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.17 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.16 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.16 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.15 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.15 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.14 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.13 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.13 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.12 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.12 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.12 | |
| PLN02476 | 278 | O-methyltransferase | 99.11 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.1 | |
| PLN02366 | 308 | spermidine synthase | 99.1 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.09 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.09 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.09 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.08 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.08 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.08 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.03 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 99.02 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.01 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.0 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.99 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.99 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.99 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.97 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.94 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.93 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.92 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.91 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.91 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.9 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.88 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.87 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.87 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.87 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.87 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.86 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.83 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.83 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.8 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.79 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.77 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.75 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.74 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.74 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.73 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.72 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.7 | |
| PLN02823 | 336 | spermine synthase | 98.69 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.67 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.67 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.67 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.66 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.66 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.66 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.63 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.63 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.62 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.58 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.55 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.52 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.52 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.52 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.51 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.5 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.49 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.49 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.49 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.46 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.45 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.43 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.4 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.38 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.37 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.37 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.37 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.37 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 98.36 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.35 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.33 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.3 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.3 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.27 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.23 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 98.22 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.19 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 98.16 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 98.16 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.15 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.12 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.11 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 98.09 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.07 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.06 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.01 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.96 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.95 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.93 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.91 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.9 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.88 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.85 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.82 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.8 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.76 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.76 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.75 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.72 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.71 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.7 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.65 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.64 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.61 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 97.56 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.4 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.38 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.35 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 97.34 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 97.32 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.31 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.21 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.19 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.12 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 97.07 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 96.86 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 96.83 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.82 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 96.77 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.74 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 96.7 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 96.65 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 96.63 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 96.59 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 96.57 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 96.53 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 96.5 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.27 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 96.18 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 96.03 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 95.98 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 95.91 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 95.79 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.71 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 95.6 | |
| PHA01634 | 156 | hypothetical protein | 95.55 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 95.5 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 95.46 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 95.42 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 95.38 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.32 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 95.22 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 95.15 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 95.12 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 95.04 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 94.91 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 94.89 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 94.75 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 94.75 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 94.73 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 94.67 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 94.61 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 94.59 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 94.58 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 94.57 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 94.52 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 94.5 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 94.4 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.33 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 94.12 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 94.04 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 94.03 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 93.99 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 93.95 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 93.72 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 93.68 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 93.59 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 93.57 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 93.54 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 93.21 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 93.19 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 92.88 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 92.84 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 92.71 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 92.63 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 92.45 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 92.34 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 91.87 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 91.74 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 91.61 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 91.31 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 91.13 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 91.13 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 91.03 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 90.74 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 90.66 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 90.41 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 90.11 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.02 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 89.67 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 89.63 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 89.57 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 89.49 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 89.11 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 88.98 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 88.98 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 88.86 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 88.83 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 88.71 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 88.69 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 88.56 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 88.44 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 88.36 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 88.26 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 88.03 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 87.97 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 87.93 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 87.88 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 87.58 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 87.5 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 87.47 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 87.4 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 86.57 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 86.55 | |
| PLN02494 | 477 | adenosylhomocysteinase | 86.45 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 86.27 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 85.86 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 85.86 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 85.78 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 85.74 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 85.63 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 85.41 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 85.41 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 85.23 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 85.17 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 85.16 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 85.11 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 84.98 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 84.91 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 84.66 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 84.64 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 84.36 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 84.29 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 84.04 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 83.24 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 83.18 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 83.12 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 83.07 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 82.94 | |
| cd05281 | 341 | TDH Threonine dehydrogenase. L-threonine dehydroge | 82.94 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 82.74 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 82.73 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 82.71 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 82.51 | |
| COG4017 | 254 | Uncharacterized protein conserved in archaea [Func | 82.4 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 82.39 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 82.26 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 82.22 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 82.12 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 81.66 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 81.59 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 81.57 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 81.1 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 81.09 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 81.02 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 80.98 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 80.96 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 80.91 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 80.81 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 80.32 |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=283.02 Aligned_cols=274 Identities=71% Similarity=1.189 Sum_probs=237.1
Q ss_pred hhHHHHHHHHHHHHccCchhHHHhhhccccccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcc
Q 016981 90 AAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGI 169 (379)
Q Consensus 90 ~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGt 169 (379)
.....+.+.|..|||.....|+.+|++++|.+||.... ...+...++.++++++++.+++......++.+|||||||+
T Consensus 52 ~~~~~~~~~i~~~Yd~~~~~~e~~~g~~~h~g~~~~~~--~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~ 129 (340)
T PLN02244 52 AATADLKEGIAEFYDESSGVWEDVWGEHMHHGYYDPGA--SRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGI 129 (340)
T ss_pred cchhhHHHHHHHHHccchHHHHHHhCCcceeeccCCCC--CcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCC
Confidence 34567888999999999999999999999999998753 2234788889999999999887322223588999999999
Q ss_pred cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCHHHHHHHH
Q 016981 170 GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSEL 249 (379)
Q Consensus 170 G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~ 249 (379)
|.++..++++++++|+|+|+|+.|++.++++.+..++.+++.|.++|+.++|+++++||+|++..+++|++|+..+++++
T Consensus 130 G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~ 209 (340)
T PLN02244 130 GGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQEL 209 (340)
T ss_pred CHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHH
Confidence 99999999987889999999999999999999888887789999999999999999999999999999999999999999
Q ss_pred HHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEecCCCcccchHH
Q 016981 250 ARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPA 329 (379)
Q Consensus 250 ~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~~~~ 329 (379)
+++|||||++++.+++.....+....+.......+..+...++.+.+.+.+++.++++++||+++++++|+..+.++|..
T Consensus 210 ~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~v~~~~~~ 289 (340)
T PLN02244 210 ARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEHVAPFWPA 289 (340)
T ss_pred HHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHHHHHHHHH
Confidence 99999999999999877655454455555555566666666777778899999999999999999999999999999999
Q ss_pred HHHhhhhhhhHHHHHHhhhhhhhhhhhHhHHHHHHH
Q 016981 330 VIHSALTWKGFTSLLRTGKLSILCCWNLYVISYNYL 365 (379)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~y~ 365 (379)
+.+..+.+.++.+....+|+.+++....|+..+.|.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 325 (340)
T PLN02244 290 VIKSALTLKGLFGLLTSGWATIRGALVMPLMIKGFK 325 (340)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 888888889999988899999999888887766554
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-27 Score=205.60 Aligned_cols=205 Identities=22% Similarity=0.359 Sum_probs=155.7
Q ss_pred hhhHHHHHHHHHHHHccCchhHHHhhhccccccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCc
Q 016981 89 DAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCG 168 (379)
Q Consensus 89 ~~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcG 168 (379)
......++++++..||..++... ......+.+ .+...++.. ++.+|||+|||
T Consensus 10 ~~~v~~vF~~ia~~YD~~n~~~S-------------------~g~~~~Wr~----~~i~~~~~~-----~g~~vLDva~G 61 (238)
T COG2226 10 QEKVQKVFDKVAKKYDLMNDLMS-------------------FGLHRLWRR----ALISLLGIK-----PGDKVLDVACG 61 (238)
T ss_pred HHHHHHHHHhhHHHHHhhccccc-------------------CcchHHHHH----HHHHhhCCC-----CCCEEEEecCC
Confidence 35678899999999998774422 111222222 233333443 39999999999
Q ss_pred ccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCHHHHHH
Q 016981 169 IGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVS 247 (379)
Q Consensus 169 tG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~ 247 (379)
||.++..+++.. .++|+|+|+|+.|++.|+++....++. +++|+++|++.+||++++||+|.+.+.|.+++|++.+|+
T Consensus 62 TGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~-~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~ 140 (238)
T COG2226 62 TGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ-NVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALK 140 (238)
T ss_pred ccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc-ceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHH
Confidence 999999999987 579999999999999999999988764 499999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCEEEEEeccCCCCCCCccccchHHHH-HHHHHhhccC------------CCCCCCHHHHHHHHHhCCCcee
Q 016981 248 ELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQE-LLKKICDAYY------------LPAWCSTADYVKLLQSLSLEDI 314 (379)
Q Consensus 248 ~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------------~~~~~~~~~~~~~l~~aGF~~v 314 (379)
|++|+|||||++++.++..+........+..+... .+..+..... ...+.+.+++.++++++||+.+
T Consensus 141 E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i 220 (238)
T COG2226 141 EMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEV 220 (238)
T ss_pred HHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEE
Confidence 99999999999999998876554443333333333 1111111110 0135689999999999999998
Q ss_pred EEEecCCC
Q 016981 315 KAEDWSQN 322 (379)
Q Consensus 315 ~~~~~~~~ 322 (379)
..+.+...
T Consensus 221 ~~~~~~~G 228 (238)
T COG2226 221 RYENLTFG 228 (238)
T ss_pred eeEeeeee
Confidence 86555443
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-27 Score=215.24 Aligned_cols=221 Identities=27% Similarity=0.435 Sum_probs=158.3
Q ss_pred HHHHHHHHHccCchhHHHhhhcccccc--ccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHH
Q 016981 95 LKEGIAEFYDESSSLWEDIWGDHMHHG--FYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGS 172 (379)
Q Consensus 95 ~~~~i~~~yd~~~~~y~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~ 172 (379)
..+.|..|||..+++|..++++.+++. +|...... ...++.++++.+++.+++++ +.+|||||||.|.+
T Consensus 6 ~~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~----Le~AQ~~k~~~~~~~~~l~~-----G~~vLDiGcGwG~~ 76 (273)
T PF02353_consen 6 SRENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDT----LEEAQERKLDLLCEKLGLKP-----GDRVLDIGCGWGGL 76 (273)
T ss_dssp -HHHHHHHHTS-HHHHTTTS-TT---S----SSTT------HHHHHHHHHHHHHTTTT--T-----T-EEEEES-TTSHH
T ss_pred HHHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhh----HHHHHHHHHHHHHHHhCCCC-----CCEEEEeCCCccHH
Confidence 356799999999999999999988854 88875443 78999999999999999887 99999999999999
Q ss_pred HHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC--CHHHHHHHHH
Q 016981 173 SRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELA 250 (379)
Q Consensus 173 ~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~ 250 (379)
+..+++++|++|+|+++|+.+.+.+++++++.|+.+++.+...|..+++ .+||.|++..+++|+. +...+++++.
T Consensus 77 ~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~ 153 (273)
T PF02353_consen 77 AIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKIS 153 (273)
T ss_dssp HHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHH
T ss_pred HHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHHH
Confidence 9999999999999999999999999999999999889999999998865 3899999999999994 5689999999
Q ss_pred HhcCCCCEEEEEeccCCCCCCCccccchHHHHHHH-HHhhccCCCCCCCHHHHHHHHHhCCCceeEEEecCCCcccchHH
Q 016981 251 RVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLK-KICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPA 329 (379)
Q Consensus 251 r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~~~~ 329 (379)
++|||||++++..++.......... .....++. .+.+...+| +.+++...++++||++++++++..++..+...
T Consensus 154 ~~LkpgG~~~lq~i~~~~~~~~~~~--~~~~~~i~kyiFPgg~lp---s~~~~~~~~~~~~l~v~~~~~~~~hY~~Tl~~ 228 (273)
T PF02353_consen 154 RLLKPGGRLVLQTITHRDPPYHAER--RSSSDFIRKYIFPGGYLP---SLSEILRAAEDAGLEVEDVENLGRHYARTLRA 228 (273)
T ss_dssp HHSETTEEEEEEEEEE--HHHHHCT--TCCCHHHHHHTSTTS------BHHHHHHHHHHTT-EEEEEEE-HHHHHHHHHH
T ss_pred HhcCCCcEEEEEecccccccchhhc--CCCceEEEEeeCCCCCCC---CHHHHHHHHhcCCEEEEEEEEcCcCHHHHHHH
Confidence 9999999999988765432111100 00002222 234444444 78899999999999999998887766554444
Q ss_pred HHH
Q 016981 330 VIH 332 (379)
Q Consensus 330 ~~~ 332 (379)
+.+
T Consensus 229 W~~ 231 (273)
T PF02353_consen 229 WRE 231 (273)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=200.63 Aligned_cols=213 Identities=24% Similarity=0.343 Sum_probs=178.4
Q ss_pred HHHHHHHHHHccCchhHHHhhhcccc--ccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccH
Q 016981 94 ELKEGIAEFYDESSSLWEDIWGDHMH--HGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGG 171 (379)
Q Consensus 94 ~~~~~i~~~yd~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~ 171 (379)
...+.+..|||..+++|..++++.+. ..||..+... ..+++...++.+++.+++.+ |++|||||||.|.
T Consensus 15 ~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~t----L~eAQ~~k~~~~~~kl~L~~-----G~~lLDiGCGWG~ 85 (283)
T COG2230 15 RAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMT----LEEAQRAKLDLILEKLGLKP-----GMTLLDIGCGWGG 85 (283)
T ss_pred chhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCC----hHHHHHHHHHHHHHhcCCCC-----CCEEEEeCCChhH
Confidence 44567999999999999999998776 5677776542 78899999999999999887 9999999999999
Q ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCC--HHHHHHHH
Q 016981 172 SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSEL 249 (379)
Q Consensus 172 ~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~ 249 (379)
+++.+|++++.+|+|+++|++|.+.++++++..|+..++++...|..++. +.||.|++..+++|+.. ...+++.+
T Consensus 86 l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~ 162 (283)
T COG2230 86 LAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKV 162 (283)
T ss_pred HHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHH
Confidence 99999999999999999999999999999999999889999999998874 44999999999999965 79999999
Q ss_pred HHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEecCCCcccc
Q 016981 250 ARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPF 326 (379)
Q Consensus 250 ~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~ 326 (379)
+++|+|||.+++..+........ ....| ....+.+...+| +...+.+..+++||++.+.+.+..+....
T Consensus 163 ~~~L~~~G~~llh~I~~~~~~~~--~~~~~---i~~yiFPgG~lP---s~~~i~~~~~~~~~~v~~~~~~~~hYa~T 231 (283)
T COG2230 163 YALLKPGGRMLLHSITGPDQEFR--RFPDF---IDKYIFPGGELP---SISEILELASEAGFVVLDVESLRPHYART 231 (283)
T ss_pred HhhcCCCceEEEEEecCCCcccc--cchHH---HHHhCCCCCcCC---CHHHHHHHHHhcCcEEehHhhhcHHHHHH
Confidence 99999999999999876553221 22222 233355666655 78899999999999999887666555443
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-27 Score=209.64 Aligned_cols=163 Identities=26% Similarity=0.447 Sum_probs=90.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
+.+|||+|||||.++..+++.. ..+|+|+|+|+.|++.|+++....+.. +++++++|++++|+++++||+|++.+.+
T Consensus 48 g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~~fgl 126 (233)
T PF01209_consen 48 GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTCSFGL 126 (233)
T ss_dssp --EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEES-G
T ss_pred CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEHHhhH
Confidence 8899999999999999999876 369999999999999999999987764 8999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHH-------HHHHHHHhhcc-C----CCCCCCHHHHHH
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWE-------QELLKKICDAY-Y----LPAWCSTADYVK 304 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~----~~~~~~~~~~~~ 304 (379)
++++|+.++++|++|+|||||++++.++..+........+.-+. ..++..-...+ + +..+.+.+++.+
T Consensus 127 rn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~ 206 (233)
T PF01209_consen 127 RNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKE 206 (233)
T ss_dssp GG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH--------------------------------------
T ss_pred HhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeecccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999987654321111111111 01111100011 1 124668999999
Q ss_pred HHHhCCCceeEEEecCCC
Q 016981 305 LLQSLSLEDIKAEDWSQN 322 (379)
Q Consensus 305 ~l~~aGF~~v~~~~~~~~ 322 (379)
+|+++||+.++.+.+...
T Consensus 207 ~l~~~Gf~~v~~~~~~~G 224 (233)
T PF01209_consen 207 LLEEAGFKNVEYRPLTFG 224 (233)
T ss_dssp ------------------
T ss_pred cccccccccccccccccc
Confidence 999999999887655443
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-24 Score=193.38 Aligned_cols=162 Identities=22% Similarity=0.330 Sum_probs=123.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHH--cCCCCCeEEEEccCCCCCCCCCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAA--RGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~--~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~ 234 (379)
+.+|||+|||+|.++..++++.+ .+|+|+|+|+.|++.|+++... .+..+++.+.++|++++|+++++||+|++..
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 153 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY 153 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence 78999999999999999998753 5999999999999999887542 1223579999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHH-HHHHhhcc-----------CCCCCCCHHHH
Q 016981 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQEL-LKKICDAY-----------YLPAWCSTADY 302 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------~~~~~~~~~~~ 302 (379)
+++|++++..++++++|+|||||++++.++..+... ....+..+.... .......+ ....+.+++++
T Consensus 154 ~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el 232 (261)
T PLN02233 154 GLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQP-FTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEEL 232 (261)
T ss_pred ccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcH-HHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHH
Confidence 999999999999999999999999999998754421 111111111000 00000000 01236699999
Q ss_pred HHHHHhCCCceeEEEecCC
Q 016981 303 VKLLQSLSLEDIKAEDWSQ 321 (379)
Q Consensus 303 ~~~l~~aGF~~v~~~~~~~ 321 (379)
.++|+++||+++....+..
T Consensus 233 ~~ll~~aGF~~~~~~~~~~ 251 (261)
T PLN02233 233 EKLALEAGFSSAKHYEISG 251 (261)
T ss_pred HHHHHHCCCCEEEEEEcCC
Confidence 9999999999998766543
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-23 Score=190.46 Aligned_cols=192 Identities=22% Similarity=0.447 Sum_probs=145.2
Q ss_pred ccCchhHHHhhhc-cccccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCC
Q 016981 104 DESSSLWEDIWGD-HMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGA 182 (379)
Q Consensus 104 d~~~~~y~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~ 182 (379)
......|+..++. .++++ . . .....+++.+.+.+ +.+|||||||+|..+..+++..++
T Consensus 18 ~~~~~~~e~~~g~~~~~~g-----g-------~----~~~~~~l~~l~l~~-----~~~VLDiGcG~G~~a~~la~~~~~ 76 (263)
T PTZ00098 18 DEGIKAYEFIFGEDYISSG-----G-------I----EATTKILSDIELNE-----NSKVLDIGSGLGGGCKYINEKYGA 76 (263)
T ss_pred cccchhHHHHhCCCCCCCC-----c-------h----HHHHHHHHhCCCCC-----CCEEEEEcCCCChhhHHHHhhcCC
Confidence 3456788988884 33333 1 1 13456666666655 899999999999999999887678
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC--CHHHHHHHHHHhcCCCCEEE
Q 016981 183 KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTII 260 (379)
Q Consensus 183 ~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~r~LkpgG~l~ 260 (379)
+|+|+|+|+.|++.|+++... .+++.+..+|+...++++++||+|++..+++|++ ++..++++++++|||||+++
T Consensus 77 ~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lv 153 (263)
T PTZ00098 77 HVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILL 153 (263)
T ss_pred EEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 999999999999999988653 2579999999998888889999999999999986 78999999999999999999
Q ss_pred EEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEecCCCcccchH
Q 016981 261 IVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWP 328 (379)
Q Consensus 261 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~~~ 328 (379)
+.++....... ......... ... ...+.+++++.++|+++||++++.++.+.....++.
T Consensus 154 i~d~~~~~~~~----~~~~~~~~~---~~~--~~~~~~~~~~~~~l~~aGF~~v~~~d~~~~~~~~~~ 212 (263)
T PTZ00098 154 ITDYCADKIEN----WDEEFKAYI---KKR--KYTLIPIQEYGDLIKSCNFQNVVAKDISDYWLELLQ 212 (263)
T ss_pred EEEeccccccC----cHHHHHHHH---Hhc--CCCCCCHHHHHHHHHHCCCCeeeEEeCcHHHHHHHH
Confidence 99876543211 111111111 111 123568999999999999999999887665554443
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.2e-23 Score=175.83 Aligned_cols=198 Identities=18% Similarity=0.263 Sum_probs=148.0
Q ss_pred hhhHHHHHHHHHHHHccCchhHHHhhhccccccccCCCCCCCcchHHHHHHHHHH-HHHHHcCCCCCCCCCCCEEEEeCC
Q 016981 89 DAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIE-ETLRFAGVSEDPTKRPKNVVDVGC 167 (379)
Q Consensus 89 ~~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~vLDiGc 167 (379)
...+..++++++..||..++.-.. + .+++.+ ..+..++.. +++++||++|
T Consensus 59 e~~V~~vF~~vA~~YD~mND~mSl--G----------------------iHRlWKd~~v~~L~p~-----~~m~~lDvaG 109 (296)
T KOG1540|consen 59 ERLVHHVFESVAKKYDIMNDAMSL--G----------------------IHRLWKDMFVSKLGPG-----KGMKVLDVAG 109 (296)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhc--c----------------------hhHHHHHHhhhccCCC-----CCCeEEEecC
Confidence 344678899999999987665320 0 111111 223333333 3799999999
Q ss_pred cccHHHHHHHHHc-C------CEEEEEeCCHHHHHHHHHHHHHcCCCCC--eEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 168 GIGGSSRYLAKKF-G------AKCQGITLSPVQAQRANALAAARGLADK--VSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 168 GtG~~~~~l~~~~-~------~~v~gvD~s~~~~~~a~~~~~~~~~~~~--i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
|||..+..+.+.. . .+|++.|++|.|+..++++..+.++..+ +.++++|++++||++++||..++.+.+..
T Consensus 110 GTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN 189 (296)
T KOG1540|consen 110 GTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRN 189 (296)
T ss_pred CcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceec
Confidence 9999999998876 3 6899999999999999999987776554 89999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHH-------hhcc-----CCCCCCCHHHHHHHH
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI-------CDAY-----YLPAWCSTADYVKLL 306 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-----~~~~~~~~~~~~~~l 306 (379)
++++++.|++++|+|||||++.+.++..-+..+....+..+..+.+..+ ...+ .+..+.+.+++..+.
T Consensus 190 ~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~mi 269 (296)
T KOG1540|consen 190 VTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMI 269 (296)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHH
Confidence 9999999999999999999999999876653333332222222221111 1111 112467899999999
Q ss_pred HhCCCceeE
Q 016981 307 QSLSLEDIK 315 (379)
Q Consensus 307 ~~aGF~~v~ 315 (379)
+++||..+.
T Consensus 270 edaGF~~~~ 278 (296)
T KOG1540|consen 270 EDAGFSSVN 278 (296)
T ss_pred HHcCCcccc
Confidence 999999886
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-22 Score=178.77 Aligned_cols=173 Identities=19% Similarity=0.306 Sum_probs=129.5
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
..+++.+.+.+ +.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|+++++..+. +++.+..+|+.+.
T Consensus 35 ~~~l~~l~~~~-----~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~ 108 (231)
T TIGR02752 35 KDTMKRMNVQA-----GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMEL 108 (231)
T ss_pred HHHHHhcCCCC-----CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcC
Confidence 34455555544 7899999999999999999875 46999999999999999999887766 5899999999988
Q ss_pred CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCcccc-------chHHHHHHH----HH-h
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESL-------QPWEQELLK----KI-C 288 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~-------~~~~~~~~~----~~-~ 288 (379)
++++++||+|++..+++|++++..+++++.++|||||++++.+...+........+ .+.....+. .. .
T Consensus 109 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 188 (231)
T TIGR02752 109 PFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSW 188 (231)
T ss_pred CCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHH
Confidence 88888999999999999999999999999999999999999886543321100000 000000000 00 0
Q ss_pred hccCCCCCCCHHHHHHHHHhCCCceeEEEecCC
Q 016981 289 DAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (379)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 321 (379)
.......+.+.+++.++|+++||++++++.+..
T Consensus 189 ~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~ 221 (231)
T TIGR02752 189 LQESTRDFPGMDELAEMFQEAGFKDVEVKSYTG 221 (231)
T ss_pred HHHHHHHcCCHHHHHHHHHHcCCCeeEEEEccc
Confidence 000112356899999999999999998877654
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.3e-22 Score=183.32 Aligned_cols=159 Identities=20% Similarity=0.263 Sum_probs=122.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++....+...++.+.++|++++++.+++||+|++..+++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 4789999999999999999875 789999999999999999887655444589999999999887788999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhh-cc-CCCCCCCHHHHHHHHHhCCCceeE
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD-AY-YLPAWCSTADYVKLLQSLSLEDIK 315 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~~aGF~~v~ 315 (379)
|+.|+..++++++++|||||.+++.++........ .......++..... .. ....+++++++.++|+++||++++
T Consensus 210 Hv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~---~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~ 286 (322)
T PLN02396 210 HVANPAEFCKSLSALTIPNGATVLSTINRTMRAYA---STIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKE 286 (322)
T ss_pred hcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHH---HhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEE
Confidence 99999999999999999999999998643210000 00000111111111 11 112467999999999999999998
Q ss_pred EEecC
Q 016981 316 AEDWS 320 (379)
Q Consensus 316 ~~~~~ 320 (379)
+..+.
T Consensus 287 ~~G~~ 291 (322)
T PLN02396 287 MAGFV 291 (322)
T ss_pred EeeeE
Confidence 86543
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=184.92 Aligned_cols=211 Identities=22% Similarity=0.310 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHccCchhHHHhhhcccc--ccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCccc
Q 016981 93 RELKEGIAEFYDESSSLWEDIWGDHMH--HGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIG 170 (379)
Q Consensus 93 ~~~~~~i~~~yd~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG 170 (379)
....+.+..|||..+++|..++++.++ .+||.... ....++...+..+++.+++.+ +.+|||||||+|
T Consensus 110 ~~~~~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~~~-----~L~~Aq~~k~~~l~~~l~l~~-----g~rVLDIGcG~G 179 (383)
T PRK11705 110 KRAWIVGKEHYDLGNDLFEAMLDPRMQYSCGYWKDAD-----TLEEAQEAKLDLICRKLQLKP-----GMRVLDIGCGWG 179 (383)
T ss_pred hhHHHhhhhhcCCcHHHHHHhcCCCCcccccccCCCC-----CHHHHHHHHHHHHHHHhCCCC-----CCEEEEeCCCcc
Confidence 445667889999999999999998765 46775322 278888889999999888765 899999999999
Q ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCC--HHHHHHH
Q 016981 171 GSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSE 248 (379)
Q Consensus 171 ~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~ 248 (379)
.++..+++.++++|+|+|+|+.|++.|+++.+ ++ ++++...|+.++ +++||.|++..+++|+.+ ...++++
T Consensus 180 ~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~ 252 (383)
T PRK11705 180 GLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEV 252 (383)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHH
Confidence 99999998778899999999999999999874 32 478888888765 478999999999999954 4789999
Q ss_pred HHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEecCCCcccchH
Q 016981 249 LARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWP 328 (379)
Q Consensus 249 ~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~~~ 328 (379)
+.++|||||.+++.++.......... .+... .+.+... ..+.+++.+.++ .||++.+++++..++..+..
T Consensus 253 i~r~LkpGG~lvl~~i~~~~~~~~~~---~~i~~---yifp~g~---lps~~~i~~~~~-~~~~v~d~~~~~~hy~~TL~ 322 (383)
T PRK11705 253 VRRCLKPDGLFLLHTIGSNKTDTNVD---PWINK---YIFPNGC---LPSVRQIAQASE-GLFVMEDWHNFGADYDRTLM 322 (383)
T ss_pred HHHHcCCCcEEEEEEccCCCCCCCCC---CCcee---eecCCCc---CCCHHHHHHHHH-CCcEEEEEecChhhHHHHHH
Confidence 99999999999998875543221111 11111 1112222 337888888766 69998888777666654433
Q ss_pred HH
Q 016981 329 AV 330 (379)
Q Consensus 329 ~~ 330 (379)
.+
T Consensus 323 ~W 324 (383)
T PRK11705 323 AW 324 (383)
T ss_pred HH
Confidence 33
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-21 Score=177.02 Aligned_cols=171 Identities=19% Similarity=0.174 Sum_probs=127.6
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
+-+..+++.++ . ++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....++.+++.++++|+.+
T Consensus 32 ~~~~~~l~~l~-~-----~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~ 104 (255)
T PRK11036 32 QDLDRLLAELP-P-----RPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQD 104 (255)
T ss_pred HHHHHHHHhcC-C-----CCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHH
Confidence 34566776654 2 3689999999999999999987 789999999999999999999988877789999999987
Q ss_pred CC-CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHh---hccC-CC
Q 016981 220 QP-FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC---DAYY-LP 294 (379)
Q Consensus 220 ~~-~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~ 294 (379)
++ +.+++||+|++..+++|+.++..+++++.++|||||++++..+....... ...+............ .... ..
T Consensus 105 l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ 183 (255)
T PRK11036 105 IAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLM-HNMVAGNFDYVQAGMPKRKKRTLSPD 183 (255)
T ss_pred HhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHH-HHHHccChHHHHhcCccccccCCCCC
Confidence 63 56789999999999999999999999999999999999988755332100 0000000000000000 0001 11
Q ss_pred CCCCHHHHHHHHHhCCCceeEEEe
Q 016981 295 AWCSTADYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 295 ~~~~~~~~~~~l~~aGF~~v~~~~ 318 (379)
..++++++.++|+++||+++....
T Consensus 184 ~~~~~~~l~~~l~~aGf~~~~~~g 207 (255)
T PRK11036 184 YPLDPEQVYQWLEEAGWQIMGKTG 207 (255)
T ss_pred CCCCHHHHHHHHHHCCCeEeeeee
Confidence 346899999999999999986543
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.6e-21 Score=188.30 Aligned_cols=168 Identities=28% Similarity=0.490 Sum_probs=132.8
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC
Q 016981 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (379)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 221 (379)
.+.+++.+.+. ++.+|||||||+|..+..+++..+.+|+|+|+|+.+++.|+++... ...++.|.++|+...+
T Consensus 255 te~l~~~~~~~-----~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~--~~~~v~~~~~d~~~~~ 327 (475)
T PLN02336 255 TKEFVDKLDLK-----PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIG--RKCSVEFEVADCTKKT 327 (475)
T ss_pred HHHHHHhcCCC-----CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhc--CCCceEEEEcCcccCC
Confidence 34555555543 3789999999999999999987788999999999999999987653 3357999999999888
Q ss_pred CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHH
Q 016981 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (379)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (379)
+++++||+|++..+++|++++..++++++++|||||++++.++......+. .....++... .+ .+.+.++
T Consensus 328 ~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-----~~~~~~~~~~--g~---~~~~~~~ 397 (475)
T PLN02336 328 YPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPS-----PEFAEYIKQR--GY---DLHDVQA 397 (475)
T ss_pred CCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCc-----HHHHHHHHhc--CC---CCCCHHH
Confidence 888899999999999999999999999999999999999998765432211 1111222211 11 2458999
Q ss_pred HHHHHHhCCCceeEEEecCCCcccc
Q 016981 302 YVKLLQSLSLEDIKAEDWSQNVAPF 326 (379)
Q Consensus 302 ~~~~l~~aGF~~v~~~~~~~~~~~~ 326 (379)
+.++|+++||+++.+++++..+..+
T Consensus 398 ~~~~l~~aGF~~i~~~d~~~~~~~~ 422 (475)
T PLN02336 398 YGQMLKDAGFDDVIAEDRTDQFLQV 422 (475)
T ss_pred HHHHHHHCCCeeeeeecchHHHHHH
Confidence 9999999999999888777655443
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-20 Score=172.70 Aligned_cols=156 Identities=21% Similarity=0.227 Sum_probs=118.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||||||+|.++..+++.....|+|+|+|+.++..++......+...++.+..+|++++|+ +++||+|++..+++|
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc
Confidence 7899999999999999999875457999999999987665543333223579999999999988 788999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEe
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 318 (379)
+.++..++++++++|||||.+++.++..+.... ..+.+. ..+......+. ..+.+++.++|+++||+++++.+
T Consensus 202 ~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~--~~l~p~--~~y~~~~~~~~---lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 202 RRSPLDHLKQLKDQLVPGGELVLETLVIDGDEN--TVLVPG--DRYAKMRNVYF---IPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCc--cccCch--hHHhcCcccee---CCCHHHHHHHHHHcCCceEEEEe
Confidence 999999999999999999999998754332111 011110 11111111122 23899999999999999999987
Q ss_pred cCCC
Q 016981 319 WSQN 322 (379)
Q Consensus 319 ~~~~ 322 (379)
....
T Consensus 275 ~~~t 278 (322)
T PRK15068 275 VSVT 278 (322)
T ss_pred CCCC
Confidence 6553
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-21 Score=166.51 Aligned_cols=156 Identities=26% Similarity=0.340 Sum_probs=120.9
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
++.+|||+|||.|.++..+|+. |++|+|+|+++.+++.|+.+....++ ++++.+..++++....++||+|+|..|++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 3899999999999999999998 89999999999999999999998886 57888888888866568999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccC--CCCCCCHHHHHHHHHhCCCceeE
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYY--LPAWCSTADYVKLLQSLSLEDIK 315 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~aGF~~v~ 315 (379)
|++|+..+++.+.+++||||.++++++..... ...+.-...+.+-+..+..- ...+..++++..++..+|+...+
T Consensus 136 Hv~dp~~~~~~c~~lvkP~G~lf~STinrt~k---a~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~ 212 (243)
T COG2227 136 HVPDPESFLRACAKLVKPGGILFLSTINRTLK---AYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIID 212 (243)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEeccccCHH---HHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEe
Confidence 99999999999999999999999998652210 00000111111111111110 11356789999999999998887
Q ss_pred EEec
Q 016981 316 AEDW 319 (379)
Q Consensus 316 ~~~~ 319 (379)
...+
T Consensus 213 ~~g~ 216 (243)
T COG2227 213 RKGL 216 (243)
T ss_pred ecce
Confidence 6544
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.1e-20 Score=165.65 Aligned_cols=164 Identities=21% Similarity=0.311 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC
Q 016981 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (379)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 217 (379)
+....+.+++.++.. ++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.++++.. ...+.++|+
T Consensus 27 q~~~a~~l~~~l~~~-----~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~ 94 (251)
T PRK10258 27 QRQSADALLAMLPQR-----KFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA------ADHYLAGDI 94 (251)
T ss_pred HHHHHHHHHHhcCcc-----CCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCc
Confidence 334555566665533 2789999999999999998876 7899999999999999988642 356889999
Q ss_pred CCCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016981 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (379)
Q Consensus 218 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (379)
+.+++++++||+|+++.++++++++..++.++.++|||||.++++.+...... . ....+...........+.
T Consensus 95 ~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~-------e-l~~~~~~~~~~~~~~~~~ 166 (251)
T PRK10258 95 ESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLP-------E-LHQAWQAVDERPHANRFL 166 (251)
T ss_pred ccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchH-------H-HHHHHHHhccCCccccCC
Confidence 99998888999999999999999999999999999999999999987654321 1 112222222222333577
Q ss_pred CHHHHHHHHHhCCCceeEEEecCCC
Q 016981 298 STADYVKLLQSLSLEDIKAEDWSQN 322 (379)
Q Consensus 298 ~~~~~~~~l~~aGF~~v~~~~~~~~ 322 (379)
+.+++..+|+..|++. +++.+...
T Consensus 167 ~~~~l~~~l~~~~~~~-~~~~~~~~ 190 (251)
T PRK10258 167 PPDAIEQALNGWRYQH-HIQPITLW 190 (251)
T ss_pred CHHHHHHHHHhCCcee-eeeEEEEE
Confidence 9999999999999864 44444443
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=167.09 Aligned_cols=170 Identities=16% Similarity=0.153 Sum_probs=122.7
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
.....++..++... +.+|||+|||+|.++..++......|+|+|+|+.|+..++......+...++.+..+++++
T Consensus 108 ~~~~~~l~~l~~~~-----g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~ 182 (314)
T TIGR00452 108 IKWDRVLPHLSPLK-----GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ 182 (314)
T ss_pred HHHHHHHHhcCCCC-----CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH
Confidence 34555666655443 8899999999999999888874457999999999988654432222223478888899988
Q ss_pred CCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCH
Q 016981 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCST 299 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (379)
++.. .+||+|+++.+++|++++..+|++++++|||||.|++.+...+... ...+.+. ..+.+....+. ..+.
T Consensus 183 lp~~-~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~--~~~l~p~--~ry~k~~nv~f---lpS~ 254 (314)
T TIGR00452 183 LHEL-YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDL--NTVLVPK--DRYAKMKNVYF---IPSV 254 (314)
T ss_pred CCCC-CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCcc--ccccCch--HHHHhcccccc---CCCH
Confidence 8754 5899999999999999999999999999999999999875432211 1111111 11112212222 3489
Q ss_pred HHHHHHHHhCCCceeEEEecCCC
Q 016981 300 ADYVKLLQSLSLEDIKAEDWSQN 322 (379)
Q Consensus 300 ~~~~~~l~~aGF~~v~~~~~~~~ 322 (379)
.++..+|+++||+++++.+....
T Consensus 255 ~~L~~~L~~aGF~~V~i~~~~~t 277 (314)
T TIGR00452 255 SALKNWLEKVGFENFRILDVLKT 277 (314)
T ss_pred HHHHHHHHHCCCeEEEEEeccCC
Confidence 99999999999999998765543
|
Known examples to date are restricted to the proteobacteria. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-19 Score=162.29 Aligned_cols=164 Identities=24% Similarity=0.391 Sum_probs=124.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
+.+|||+|||+|.++..+++.++ .+++|+|+++.+++.+++++...+...++.+..+|+.+.+++.++||+|++..++
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l 131 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGL 131 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEeccc
Confidence 78999999999999999998873 8999999999999999999877655567999999998888777899999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHH-HHHHHHHhhcc------------CCCCCCCHHHHH
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWE-QELLKKICDAY------------YLPAWCSTADYV 303 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------------~~~~~~~~~~~~ 303 (379)
+++.++..+++++.++|+|||.+++.++..+..... .....+. ..........+ ....+++.+++.
T Consensus 132 ~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (239)
T PRK00216 132 RNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPL-KKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELA 210 (239)
T ss_pred ccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHH-HHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999999999999988654332110 0000000 00000000000 001245789999
Q ss_pred HHHHhCCCceeEEEecCCCc
Q 016981 304 KLLQSLSLEDIKAEDWSQNV 323 (379)
Q Consensus 304 ~~l~~aGF~~v~~~~~~~~~ 323 (379)
++|+++||+++++..+...+
T Consensus 211 ~~l~~aGf~~~~~~~~~~~~ 230 (239)
T PRK00216 211 AMLEEAGFERVRYRNLTGGI 230 (239)
T ss_pred HHHHhCCCceeeeeeeecCc
Confidence 99999999999888765444
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=161.00 Aligned_cols=152 Identities=19% Similarity=0.207 Sum_probs=108.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||||.++..+++..+.+|+|+|+|+.|++.|+++ ..+.++|++++|+++++||+|++..+++|
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~ 122 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSFALHA 122 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecChhhc
Confidence 679999999999999999987657999999999999998863 23578999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHh-------hcc-CC----CCCCCHHHHHHHH
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC-------DAY-YL----PAWCSTADYVKLL 306 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~----~~~~~~~~~~~~l 306 (379)
++|+.+++++++|+|||. +.+.++..++.......+.-+....+..+. ..+ ++ ..+.+++++.++|
T Consensus 123 ~~d~~~~l~e~~RvLkp~--~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~ 200 (226)
T PRK05785 123 SDNIEKVIAEFTRVSRKQ--VGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIF 200 (226)
T ss_pred cCCHHHHHHHHHHHhcCc--eEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999994 334444333211111111111111111110 001 11 1356899999999
Q ss_pred HhCCCceeEEEecCCC
Q 016981 307 QSLSLEDIKAEDWSQN 322 (379)
Q Consensus 307 ~~aGF~~v~~~~~~~~ 322 (379)
+++| ..+..+.+...
T Consensus 201 ~~~~-~~~~~~~~~~G 215 (226)
T PRK05785 201 EKYA-DIKVYEERGLG 215 (226)
T ss_pred HHHh-CceEEEEcccc
Confidence 9974 66666655443
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.4e-20 Score=166.97 Aligned_cols=158 Identities=25% Similarity=0.340 Sum_probs=117.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
+.+..+++.++... +.+|||+|||+|.++..+++++ +.+|+|+|+|+.|++.|++ .++.+.++|++
T Consensus 16 ~~~~~ll~~l~~~~-----~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~--------~~~~~~~~d~~ 82 (255)
T PRK14103 16 RPFYDLLARVGAER-----ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE--------RGVDARTGDVR 82 (255)
T ss_pred CHHHHHHHhCCCCC-----CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh--------cCCcEEEcChh
Confidence 35566777766554 7899999999999999999986 6799999999999999876 25789999998
Q ss_pred CCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHH-----HHHhhc--c
Q 016981 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELL-----KKICDA--Y 291 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--~ 291 (379)
+++ ++++||+|+++.+++|++++..++++++++|||||++++..+.... .+. ........ ...... +
T Consensus 83 ~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~----~~~~~~~~~~~~w~~~~~~~~~ 156 (255)
T PRK14103 83 DWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFD-APS----HAAVRALARREPWAKLLRDIPF 156 (255)
T ss_pred hCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcC-Chh----HHHHHHHhccCchhHHhccccc
Confidence 774 4679999999999999999999999999999999999987543211 011 00000000 000000 0
Q ss_pred C-CCCCCCHHHHHHHHHhCCCceeEE
Q 016981 292 Y-LPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 292 ~-~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
. ...+.+++++.++|+++||++...
T Consensus 157 ~~~~~~~~~~~~~~~l~~aGf~v~~~ 182 (255)
T PRK14103 157 RVGAVVQTPAGYAELLTDAGCKVDAW 182 (255)
T ss_pred ccCcCCCCHHHHHHHHHhCCCeEEEE
Confidence 0 113458999999999999975443
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.2e-20 Score=163.91 Aligned_cols=150 Identities=27% Similarity=0.433 Sum_probs=124.3
Q ss_pred CEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
++|||||||+|.++..+++.+ +.+|+|+|+|+.+++.+++++...++.+++.+...|+...+++ ++||+|++..+++|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 379999999999999999987 5799999999999999999999888888899999999776664 58999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEe
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 318 (379)
+.++..++++++++|||||++++.++.......... ......+.+..+|.++++++||++++..+
T Consensus 80 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~---------------~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEH---------------EETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccc---------------cccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 999999999999999999999999864322111000 00001144889999999999999999988
Q ss_pred cCCCccc
Q 016981 319 WSQNVAP 325 (379)
Q Consensus 319 ~~~~~~~ 325 (379)
+..++..
T Consensus 145 ~~~~~~~ 151 (224)
T smart00828 145 ASLEIAN 151 (224)
T ss_pred CcHhHhh
Confidence 8776654
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-19 Score=165.91 Aligned_cols=145 Identities=23% Similarity=0.325 Sum_probs=117.5
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
++.+|||+|||+|.++..+++.. +.+|+++|+|+.|++.|+++... .++++..+|++++++++++||+|++..++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~L 188 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence 37899999999999999998876 57999999999999999987642 46889999999999888999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
+|++++..++++++++|||||++++.+..... .+..+..... +. .+.+.+++.++|+++||+.+++
T Consensus 189 ~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~---------~~~~r~~~~~---~~--~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 189 EYWPDPQRGIKEAYRVLKIGGKACLIGPVHPT---------FWLSRFFADV---WM--LFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred hhCCCHHHHHHHHHHhcCCCcEEEEEEecCcc---------hhHHHHhhhh---hc--cCCCHHHHHHHHHHCCCeEEEE
Confidence 99999999999999999999999887643221 1111111111 11 1347899999999999999998
Q ss_pred EecC
Q 016981 317 EDWS 320 (379)
Q Consensus 317 ~~~~ 320 (379)
+++.
T Consensus 255 ~~i~ 258 (340)
T PLN02490 255 KRIG 258 (340)
T ss_pred EEcC
Confidence 7653
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=158.98 Aligned_cols=153 Identities=24% Similarity=0.319 Sum_probs=121.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
++.+|||+|||+|..+..+++..+ .+|+|+|+++.|++.|+++....++ +++.+..+|++++++++++||+|+++.+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 589999999999999888777653 4799999999999999999888776 4899999999998888889999999999
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeE
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 315 (379)
++|.++...++++++++|||||++++.++..... +......... ... .......+.+++.++|+++||..++
T Consensus 156 ~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~------~~~~~~~~~~-~~~-~~~~~~~~~~e~~~~l~~aGf~~v~ 227 (272)
T PRK11873 156 INLSPDKERVFKEAFRVLKPGGRFAISDVVLRGE------LPEEIRNDAE-LYA-GCVAGALQEEEYLAMLAEAGFVDIT 227 (272)
T ss_pred ccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCC------CCHHHHHhHH-HHh-ccccCCCCHHHHHHHHHHCCCCceE
Confidence 9999999999999999999999999998754331 1111111111 111 1112245789999999999999987
Q ss_pred EEec
Q 016981 316 AEDW 319 (379)
Q Consensus 316 ~~~~ 319 (379)
+...
T Consensus 228 i~~~ 231 (272)
T PRK11873 228 IQPK 231 (272)
T ss_pred EEec
Confidence 7543
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=154.98 Aligned_cols=162 Identities=23% Similarity=0.338 Sum_probs=121.0
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
++.+|||+|||+|.++..+++..+ .+++|+|+++.+++.++++.. ...++.+..+|+.+.++++++||+|++..+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~ 115 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAFG 115 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCCCcEEEEEEeee
Confidence 378999999999999999998874 599999999999999998875 235789999999988877789999999999
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc------------CCCCCCCHHHHH
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY------------YLPAWCSTADYV 303 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ 303 (379)
++++.++..+++++.+.|+|||++++.++...........+..+...........+ ....+.+.+++.
T Consensus 116 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (223)
T TIGR01934 116 LRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELA 195 (223)
T ss_pred eCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999886543221110000000000000000000 001245889999
Q ss_pred HHHHhCCCceeEEEecCCC
Q 016981 304 KLLQSLSLEDIKAEDWSQN 322 (379)
Q Consensus 304 ~~l~~aGF~~v~~~~~~~~ 322 (379)
++|+++||+.+.++.+...
T Consensus 196 ~~l~~aGf~~~~~~~~~~~ 214 (223)
T TIGR01934 196 AMLKEAGFEEVRYRSLTFG 214 (223)
T ss_pred HHHHHcCCccceeeeeecc
Confidence 9999999999888765544
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.7e-19 Score=158.88 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=113.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
+.+|||+|||+|..+..+++.. +.+|+|+|+|+.|++.|++++...+...++.++++|+.+.+++ .+|+|+++.+
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~ 134 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFT 134 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhhH
Confidence 7899999999999999888742 6799999999999999999998877767899999999888764 5999999999
Q ss_pred cCCCCC--HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHH-------Hhh----ccCCCCCCCHHHH
Q 016981 236 GEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK-------ICD----AYYLPAWCSTADY 302 (379)
Q Consensus 236 l~~~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~ 302 (379)
++|+++ ...++++++++|||||.+++.+............+......+... +.. .-......+.++.
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~ 214 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETH 214 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHH
Confidence 999964 368999999999999999999854333222221111111111100 000 0001113488899
Q ss_pred HHHHHhCCCcee
Q 016981 303 VKLLQSLSLEDI 314 (379)
Q Consensus 303 ~~~l~~aGF~~v 314 (379)
.++|+++||+.+
T Consensus 215 ~~~L~~aGF~~v 226 (247)
T PRK15451 215 KARLHKAGFEHS 226 (247)
T ss_pred HHHHHHcCchhH
Confidence 999999999865
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.6e-20 Score=154.81 Aligned_cols=136 Identities=33% Similarity=0.529 Sum_probs=105.0
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
++.+|||+|||+|.++..+++. +.+|+|+|+++.+++. .++.....+....+.++++||+|+++.+++
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~ 89 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSFDLIICNDVLE 89 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSEEEEEEESSGG
T ss_pred CCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccchhhHhhHHHHh
Confidence 4889999999999999999776 7799999999999987 134444444445455678999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHH---hhccCCCCCCCHHHHHHHHHhCCCcee
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI---CDAYYLPAWCSTADYVKLLQSLSLEDI 314 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~aGF~~v 314 (379)
|++|+..+|+++.++|||||++++.++.... .. ....... ........+++.+++.++++++||+++
T Consensus 90 ~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv 159 (161)
T PF13489_consen 90 HLPDPEEFLKELSRLLKPGGYLVISDPNRDD---------PS-PRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIV 159 (161)
T ss_dssp GSSHHHHHHHHHHHCEEEEEEEEEEEEBTTS---------HH-HHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEE
T ss_pred hcccHHHHHHHHHHhcCCCCEEEEEEcCCcc---------hh-hhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEE
Confidence 9999999999999999999999999975432 00 1111111 000011246799999999999999988
Q ss_pred E
Q 016981 315 K 315 (379)
Q Consensus 315 ~ 315 (379)
+
T Consensus 160 ~ 160 (161)
T PF13489_consen 160 E 160 (161)
T ss_dssp E
T ss_pred E
Confidence 6
|
... |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.1e-18 Score=152.83 Aligned_cols=173 Identities=28% Similarity=0.408 Sum_probs=128.5
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
+.+++.+.+.+ +.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.++++... ...++.+...|+...
T Consensus 9 ~~~~~~~~~~~-----~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~ 81 (241)
T PRK08317 9 ARTFELLAVQP-----GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGL 81 (241)
T ss_pred HHHHHHcCCCC-----CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccC
Confidence 34455555554 8899999999999999999876 46899999999999999987332 335899999999888
Q ss_pred CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (379)
++++++||+|++..+++|+.++..+++++.++|||||++++.+....... .................... ....+..
T Consensus 82 ~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 158 (241)
T PRK08317 82 PFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLV-WHSGDRALMRKILNFWSDHF--ADPWLGR 158 (241)
T ss_pred CCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCcee-ecCCChHHHHHHHHHHHhcC--CCCcHHH
Confidence 88888999999999999999999999999999999999999875322110 01111111222222222211 1234577
Q ss_pred HHHHHHHhCCCceeEEEecCCCccc
Q 016981 301 DYVKLLQSLSLEDIKAEDWSQNVAP 325 (379)
Q Consensus 301 ~~~~~l~~aGF~~v~~~~~~~~~~~ 325 (379)
.+.++|+++||+++.+..+.....+
T Consensus 159 ~~~~~l~~aGf~~~~~~~~~~~~~~ 183 (241)
T PRK08317 159 RLPGLFREAGLTDIEVEPYTLIETD 183 (241)
T ss_pred HHHHHHHHcCCCceeEEEEEEeccC
Confidence 8999999999999888776555444
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-19 Score=150.81 Aligned_cols=106 Identities=32% Similarity=0.513 Sum_probs=96.8
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--CCCCcccEEEec
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSM 233 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~ 233 (379)
++.+|||+|||+|.++..+++.. +.+++|+|+|+.|++.|+++++..+.+ +++|.++|+.+++ ++ +.||+|++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccC-CCeeEEEEc
Confidence 47899999999999999999543 689999999999999999999998885 9999999999976 55 899999999
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
.+++|+.++..+++++.++|++||.+++.+..
T Consensus 81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999999999999999999999999998865
|
... |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=157.27 Aligned_cols=155 Identities=14% Similarity=0.144 Sum_probs=114.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
+.+|||+|||+|.++..+++++ +.+|+|+|+|+.|++.|++++...+...++.++++|+.+.+++ .+|+|++..+
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~ 131 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNFT 131 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeecc
Confidence 7899999999999999998864 5789999999999999999988766556799999999988764 5899999999
Q ss_pred cCCCCC--HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHH----------H-hhccCCCCCCCHHHH
Q 016981 236 GEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK----------I-CDAYYLPAWCSTADY 302 (379)
Q Consensus 236 l~~~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~ 302 (379)
++|+++ +..++++++++|||||.+++.+............+......+... . ..........+.+++
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~ 211 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIETH 211 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHHHH
Confidence 999864 578999999999999999999864432211111111100001000 0 000011124589999
Q ss_pred HHHHHhCCCceeE
Q 016981 303 VKLLQSLSLEDIK 315 (379)
Q Consensus 303 ~~~l~~aGF~~v~ 315 (379)
.++|+++||..++
T Consensus 212 ~~~l~~aGF~~~~ 224 (239)
T TIGR00740 212 KARLKNVGFSHVE 224 (239)
T ss_pred HHHHHHcCCchHH
Confidence 9999999998654
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-19 Score=137.61 Aligned_cols=95 Identities=38% Similarity=0.623 Sum_probs=84.3
Q ss_pred EEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCH
Q 016981 163 VDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK 242 (379)
Q Consensus 163 LDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~ 242 (379)
||+|||+|..+..+++..+.+|+|+|+++.+++.++++... .++.+..+|++++|+++++||+|++..+++|++++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~----~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN----EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT----STEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc----cCchheeehHHhCccccccccccccccceeeccCH
Confidence 89999999999999997567999999999999999998754 35669999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCEEEE
Q 016981 243 SKFVSELARVTAPAGTIII 261 (379)
Q Consensus 243 ~~~l~~~~r~LkpgG~l~i 261 (379)
.++++++.|+|||||++++
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-18 Score=149.36 Aligned_cols=137 Identities=23% Similarity=0.363 Sum_probs=109.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|..+..++++ +.+|+|+|+|+.|++.++++....++ .++.+.+.|+.+.+++ ++||+|++..+++|
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 107 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTFD-GEYDFILSTVVLMF 107 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCcC-CCcCEEEEecchhh
Confidence 789999999999999999987 78999999999999999999888777 4689999999877664 67999999999988
Q ss_pred CC--CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 239 ~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
++ +...+++++.++|||||++++.........+.. ...+..++.+++.++++ ||+++..
T Consensus 108 ~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~el~~~~~--~~~~~~~ 168 (197)
T PRK11207 108 LEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT-----------------VGFPFAFKEGELRRYYE--GWEMVKY 168 (197)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC-----------------CCCCCccCHHHHHHHhC--CCeEEEe
Confidence 75 457999999999999999766543322111100 01123457889999887 9988776
Q ss_pred E
Q 016981 317 E 317 (379)
Q Consensus 317 ~ 317 (379)
.
T Consensus 169 ~ 169 (197)
T PRK11207 169 N 169 (197)
T ss_pred e
Confidence 3
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-19 Score=156.77 Aligned_cols=152 Identities=23% Similarity=0.295 Sum_probs=114.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-C----CeEEEEccCCCCCCCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-D----KVSFQVGDALQQPFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~----~i~~~~~d~~~~~~~~~~fD~V~~~ 233 (379)
+++|||+|||+|.++..|++. |+.|+|+|+++.|++.|++......+- . ++++.+.|++... +.||.|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhh-CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 588999999999999999997 899999999999999999984322111 1 3566777777653 459999999
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccC--CCCCCCHHHHHHHHHhCCC
Q 016981 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYY--LPAWCSTADYVKLLQSLSL 311 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~aGF 311 (379)
.+++|+.|+..++..+.+.|||||.+++++.......-... -+..+..-++.+... ...|.+++++..+|+.+|+
T Consensus 166 evleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~---i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~ 242 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGT---IFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGA 242 (282)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhcc---ccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCc
Confidence 99999999999999999999999999999865443221111 112223333333221 1246799999999999998
Q ss_pred ceeEEE
Q 016981 312 EDIKAE 317 (379)
Q Consensus 312 ~~v~~~ 317 (379)
.+..+.
T Consensus 243 ~v~~v~ 248 (282)
T KOG1270|consen 243 QVNDVV 248 (282)
T ss_pred chhhhh
Confidence 876654
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-18 Score=138.47 Aligned_cols=105 Identities=33% Similarity=0.582 Sum_probs=90.1
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC-CCCCCCCCcccEEEecc-
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQQPFPDGQFDLVWSME- 234 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~fD~V~~~~- 234 (379)
|+.+|||+|||+|.++..++++. +.+|+|+|+|+.+++.|++++...+..++++++++|+ ..... .+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 47899999999999999999954 8899999999999999999997777778999999999 33333 46699999999
Q ss_pred ccCCC---CCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 235 SGEHM---PDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 235 ~l~~~---~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+++++ .+..++++++++.|+|||++++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 45434 345889999999999999999865
|
... |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-17 Score=154.67 Aligned_cols=164 Identities=20% Similarity=0.277 Sum_probs=121.7
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC
Q 016981 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 221 (379)
..+++.+.... ..+|||||||+|.++..+++++ +.+++++|. +.+++.+++++...++.++++++.+|+.+.+
T Consensus 139 ~~l~~~~~~~~-----~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~ 212 (306)
T TIGR02716 139 QLLLEEAKLDG-----VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES 212 (306)
T ss_pred HHHHHHcCCCC-----CCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC
Confidence 33445544443 7899999999999999999998 679999998 7899999999999888788999999998766
Q ss_pred CCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCH
Q 016981 222 FPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCST 299 (379)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (379)
++ .+|+|++..++++..+. ..++++++++|||||++++.++...+.. ...+. .....+....-......+.+.
T Consensus 213 ~~--~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~ 287 (306)
T TIGR02716 213 YP--EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE--NPNFD-YLSHYILGAGMPFSVLGFKEQ 287 (306)
T ss_pred CC--CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC--Cchhh-HHHHHHHHcccccccccCCCH
Confidence 54 36999999999988654 5799999999999999999997554321 11111 111111111101111124468
Q ss_pred HHHHHHHHhCCCceeEEE
Q 016981 300 ADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 300 ~~~~~~l~~aGF~~v~~~ 317 (379)
++|.++|+++||+.+++.
T Consensus 288 ~e~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 288 ARYKEILESLGYKDVTMV 305 (306)
T ss_pred HHHHHHHHHcCCCeeEec
Confidence 999999999999988753
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=145.44 Aligned_cols=136 Identities=18% Similarity=0.258 Sum_probs=107.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++..++++ +.+|+|+|+|+.|++.++++....++ ++.+...|+...+++ ++||+|++..+++|
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAALN-EDYDFIFSTVVFMF 106 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhcccc-CCCCEEEEeccccc
Confidence 679999999999999999987 78999999999999999998887776 377888887766654 67999999999998
Q ss_pred CC--CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 239 ~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
++ +...++++++++|||||++++.++......+.. ...+..++++++.++++ +|+++..
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~-----------------~~~~~~~~~~el~~~f~--~~~~~~~ 167 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCH-----------------MPFSFTFKEDELRQYYA--DWELLKY 167 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCC-----------------CCcCccCCHHHHHHHhC--CCeEEEe
Confidence 85 457899999999999999777765432211110 01122458999999886 5888776
Q ss_pred E
Q 016981 317 E 317 (379)
Q Consensus 317 ~ 317 (379)
.
T Consensus 168 ~ 168 (195)
T TIGR00477 168 N 168 (195)
T ss_pred e
Confidence 5
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-17 Score=151.04 Aligned_cols=157 Identities=25% Similarity=0.406 Sum_probs=115.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
.....++..+.... +.+|||||||+|.++..+++.+ +.+|+|+|+|+.|++.|+++. +++.+..+|+.
T Consensus 18 ~~~~~ll~~~~~~~-----~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~ 86 (258)
T PRK01683 18 RPARDLLARVPLEN-----PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIA 86 (258)
T ss_pred cHHHHHHhhCCCcC-----CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchh
Confidence 35556666666544 7899999999999999999887 679999999999999998864 46889999987
Q ss_pred CCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCcccc------chHHHHHHHHHhhcc-
Q 016981 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESL------QPWEQELLKKICDAY- 291 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~- 291 (379)
.+. ++++||+|+++.+++|+++...++++++++|||||.+++....... .+....+ .+|... .....
T Consensus 87 ~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~----~~~~~~ 160 (258)
T PRK01683 87 SWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLD-EPSHVLMREVAENGPWEQN----LPDRGA 160 (258)
T ss_pred ccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCC-CHHHHHHHHHHccCchHHH----hccccc
Confidence 764 3568999999999999999999999999999999999886422111 0100000 011111 00010
Q ss_pred CCCCCCCHHHHHHHHHhCCCce
Q 016981 292 YLPAWCSTADYVKLLQSLSLED 313 (379)
Q Consensus 292 ~~~~~~~~~~~~~~l~~aGF~~ 313 (379)
....+.+++.+.++|.++|+.+
T Consensus 161 ~~~~~~~~~~~~~~l~~~g~~v 182 (258)
T PRK01683 161 RRAPLPPPHAYYDALAPAACRV 182 (258)
T ss_pred cCcCCCCHHHHHHHHHhCCCce
Confidence 0112457889999999999864
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=149.57 Aligned_cols=157 Identities=23% Similarity=0.276 Sum_probs=115.6
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
.+++|||||||+|..+..++.+....|+|+|.++...-..+....-.|....+.+....++++|. .+.||+|++.+||+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLY 193 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehh
Confidence 38999999999999999999885567999999987665543332223332234444356788876 68999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEE
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
|..+|...|.+++..|+|||.|++-+...+... ...+.+. ..+.+....+++| |...+..+|+++||++|++.
T Consensus 194 Hrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~--~~~L~P~--~rYa~m~nv~FiP---s~~~L~~wl~r~gF~~v~~v 266 (315)
T PF08003_consen 194 HRRSPLDHLKQLKDSLRPGGELVLETLVIDGDE--NTVLVPE--DRYAKMRNVWFIP---SVAALKNWLERAGFKDVRCV 266 (315)
T ss_pred ccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCC--ceEEccC--CcccCCCceEEeC---CHHHHHHHHHHcCCceEEEe
Confidence 999999999999999999999999876544321 1112111 1122233334444 89999999999999999997
Q ss_pred ecCCC
Q 016981 318 DWSQN 322 (379)
Q Consensus 318 ~~~~~ 322 (379)
+....
T Consensus 267 ~~~~T 271 (315)
T PF08003_consen 267 DVSPT 271 (315)
T ss_pred cCccC
Confidence 76543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.2e-18 Score=141.53 Aligned_cols=158 Identities=20% Similarity=0.237 Sum_probs=117.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeE-EEEccCCCCC-CCCCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVS-FQVGDALQQP-FPDGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~-~~~~d~~~~~-~~~~~fD~V~~~~~l 236 (379)
...|||+|||||..-.+.-..-+.+|+++|+++.|-+.+.+.+++. .+.++. |++++.+++| ++++++|.|++..+|
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~-k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEK-KPLQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhc-cCcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 5678999999998766655333689999999999999999999887 456776 9999999997 889999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
+...|+.+.|+++.|+|||||++++.+...... ..+..................-.++. +..+.|+++-|+.++.
T Consensus 156 CSve~~~k~L~e~~rlLRpgG~iifiEHva~~y----~~~n~i~q~v~ep~~~~~~dGC~ltr-d~~e~Leda~f~~~~~ 230 (252)
T KOG4300|consen 156 CSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEY----GFWNRILQQVAEPLWHLESDGCVLTR-DTGELLEDAEFSIDSC 230 (252)
T ss_pred eccCCHHHHHHHHHHhcCCCcEEEEEecccccc----hHHHHHHHHHhchhhheeccceEEeh-hHHHHhhhcccccchh
Confidence 999999999999999999999999998544321 11111122222221111111111234 4557889999999888
Q ss_pred EecCCC
Q 016981 317 EDWSQN 322 (379)
Q Consensus 317 ~~~~~~ 322 (379)
+....+
T Consensus 231 kr~~~~ 236 (252)
T KOG4300|consen 231 KRFNFG 236 (252)
T ss_pred hcccCC
Confidence 765543
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=143.54 Aligned_cols=141 Identities=30% Similarity=0.421 Sum_probs=114.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||+|.++..+++.+ ..+++|+|+++.+++.++++.. +++.+..+|+.+.++++++||+|++..+++
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence 5799999999999999999887 5679999999999999887653 478899999999888889999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEE
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
|+.++..++.++.++|||||++++.++..... .. ....... ....+.+.+++.++++++ |..+...
T Consensus 110 ~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~-------~~-~~~~~~~-----~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 110 WCDDLSQALSELARVLKPGGLLAFSTFGPGTL-------HE-LRQSFGQ-----HGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred hccCHHHHHHHHHHHcCCCcEEEEEeCCccCH-------HH-HHHHHHH-----hccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 99999999999999999999999987644321 11 1111111 112356899999999998 9877654
Q ss_pred e
Q 016981 318 D 318 (379)
Q Consensus 318 ~ 318 (379)
.
T Consensus 176 ~ 176 (240)
T TIGR02072 176 E 176 (240)
T ss_pred E
Confidence 3
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.1e-16 Score=139.79 Aligned_cols=204 Identities=22% Similarity=0.321 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHccCc-hhHHHhhhccccccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccH
Q 016981 93 RELKEGIAEFYDESS-SLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGG 171 (379)
Q Consensus 93 ~~~~~~i~~~yd~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~ 171 (379)
....+.+..||+..+ ..|+..++......... ..........+.++..+... ...++.+|||+|||+|.
T Consensus 7 ~~~~~~v~~~~~~~~~~~w~~~y~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~--~~~~~~~vLDvGcG~G~ 76 (230)
T PRK07580 7 LEHKSEVRTYFNRTGFDRWARIYSDAPVSKVRA--------TVRAGHQRMRDTVLSWLPAD--GDLTGLRILDAGCGVGS 76 (230)
T ss_pred hhchhhhhHHHhhhccchHHHhhCcCchhHHHH--------HhcchHHHHHHHHHHHHHhc--CCCCCCEEEEEeCCCCH
Confidence 345566888888653 66776655421110000 00111122333344433220 01137899999999999
Q ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCH--HHHHHHH
Q 016981 172 SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSEL 249 (379)
Q Consensus 172 ~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~ 249 (379)
++..+++. +..|+|+|+|+.|++.|++++...+...++.+..+|+. ..+++||+|++..+++|+++. ..+++++
T Consensus 77 ~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~---~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l 152 (230)
T PRK07580 77 LSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE---SLLGRFDTVVCLDVLIHYPQEDAARMLAHL 152 (230)
T ss_pred HHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch---hccCCcCEEEEcchhhcCCHHHHHHHHHHH
Confidence 99999987 67899999999999999999988776568999999843 335789999999999998644 6788888
Q ss_pred HHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc---CCCCCCCHHHHHHHHHhCCCceeEEEecC
Q 016981 250 ARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY---YLPAWCSTADYVKLLQSLSLEDIKAEDWS 320 (379)
Q Consensus 250 ~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 320 (379)
.+.+++++.+.+.. .. ..... ...+....... ....+.+.+++.++++++||++++...+.
T Consensus 153 ~~~~~~~~~i~~~~---~~------~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 216 (230)
T PRK07580 153 ASLTRGSLIFTFAP---YT------PLLAL-LHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERIS 216 (230)
T ss_pred HhhcCCeEEEEECC---cc------HHHHH-HHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeecc
Confidence 88775444333211 00 00000 01111111100 01134588999999999999999886554
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.6e-16 Score=133.28 Aligned_cols=127 Identities=20% Similarity=0.175 Sum_probs=105.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||+|..+..++... +.+|+|+|+|+.|++.|+++.+..+++ ++++..+|+.+.+. .++||+|+++.
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~-~~~fDlV~~~~--- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQ-EEKFDVVTSRA--- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCC-CCCccEEEEcc---
Confidence 7899999999999999998766 689999999999999999999998874 59999999988766 67999999874
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEE
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
+.+...++++++++|||||++++..... ...++.++.+..|+.+..+.
T Consensus 121 -~~~~~~~l~~~~~~LkpGG~lv~~~~~~-------------------------------~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 121 -VASLSDLVELCLPLLKPGGRFLALKGRD-------------------------------PEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred -ccCHHHHHHHHHHhcCCCeEEEEEeCCC-------------------------------hHHHHHHHHHhcCceEeeeE
Confidence 4567899999999999999999875210 24456677777798877666
Q ss_pred ecCCC
Q 016981 318 DWSQN 322 (379)
Q Consensus 318 ~~~~~ 322 (379)
.+..+
T Consensus 169 ~~~~~ 173 (187)
T PRK00107 169 ELTLP 173 (187)
T ss_pred EEecC
Confidence 55443
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-16 Score=140.35 Aligned_cols=164 Identities=25% Similarity=0.287 Sum_probs=117.9
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
.+...+++.+.. ...++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|++++...+...++.+.++|+..
T Consensus 40 ~~~~~~~~~l~~---~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 115 (219)
T TIGR02021 40 AMRRKLLDWLPK---DPLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLS 115 (219)
T ss_pred HHHHHHHHHHhc---CCCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 445555555542 0123789999999999999999986 679999999999999999999877665689999999887
Q ss_pred CCCCCCcccEEEeccccCCCCC--HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccC---CC
Q 016981 220 QPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYY---LP 294 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 294 (379)
.+ ++||+|++..+++|++. ...+++++.+++++++.+.+.... .... ....+........ .-
T Consensus 116 ~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~~ 182 (219)
T TIGR02021 116 LC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKT---------AWLA-FLKMIGELFPGSSRATSA 182 (219)
T ss_pred CC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCc---------hHHH-HHHHHHhhCcCcccccce
Confidence 65 78999999999998854 478899999999877665543210 0000 0111111111100 01
Q ss_pred CCCCHHHHHHHHHhCCCceeEEEecC
Q 016981 295 AWCSTADYVKLLQSLSLEDIKAEDWS 320 (379)
Q Consensus 295 ~~~~~~~~~~~l~~aGF~~v~~~~~~ 320 (379)
.+.+++++.++++++||+++......
T Consensus 183 ~~~~~~~~~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 183 YLHPMTDLERALGELGWKIVREGLVS 208 (219)
T ss_pred EEecHHHHHHHHHHcCceeeeeeccc
Confidence 24589999999999999999886443
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-15 Score=139.84 Aligned_cols=198 Identities=21% Similarity=0.288 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHccCc-hhHHHhhhcccccc--ccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcc
Q 016981 93 RELKEGIAEFYDESS-SLWEDIWGDHMHHG--FYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGI 169 (379)
Q Consensus 93 ~~~~~~i~~~yd~~~-~~y~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGt 169 (379)
....+.+..|||..+ +.|...|+...... .+. ..+ ... ..++.+++.+.... ..++.+|||+|||+
T Consensus 87 ~~~~~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~-~~~----~~~----~~v~~~l~~l~~~~--~~~~~~VLDlGcGt 155 (315)
T PLN02585 87 GDDKEVVREYFNTTGFERWRKIYGETDEVNKVQLD-IRL----GHA----QTVEKVLLWLAEDG--SLAGVTVCDAGCGT 155 (315)
T ss_pred HHHHHHHHHHhcccchhhHHHhcCCccccCceeee-ccc----ChH----HHHHHHHHHHHhcC--CCCCCEEEEecCCC
Confidence 455677888998764 55666666421110 010 000 011 22333333332110 11378999999999
Q ss_pred cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCH--H
Q 016981 170 GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL----ADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--S 243 (379)
Q Consensus 170 G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~--~ 243 (379)
|.++..+++. +.+|+|+|+|+.|++.|+++.+..+. ..++.|...|+..+ +++||+|++..+++|+++. .
T Consensus 156 G~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~ 231 (315)
T PLN02585 156 GSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDKAD 231 (315)
T ss_pred CHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHHHHH
Confidence 9999999987 78999999999999999999876421 13678888887654 4789999999999998764 3
Q ss_pred HHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCC------CCCCCHHHHHHHHHhCCCceeEEE
Q 016981 244 KFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYL------PAWCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 244 ~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
.+++.+.+ +.+||. ++.. .... + ...++......+.. ..+++.++++++|+++||+++..+
T Consensus 232 ~ll~~l~~-l~~g~l-iIs~-~p~~-------~---~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~ 298 (315)
T PLN02585 232 GMIAHLAS-LAEKRL-IISF-APKT-------L---YYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARRE 298 (315)
T ss_pred HHHHHHHh-hcCCEE-EEEe-CCcc-------h---HHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEE
Confidence 46666665 455554 4432 1111 0 11112221111111 124589999999999999987665
Q ss_pred e
Q 016981 318 D 318 (379)
Q Consensus 318 ~ 318 (379)
.
T Consensus 299 ~ 299 (315)
T PLN02585 299 M 299 (315)
T ss_pred E
Confidence 3
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.5e-16 Score=138.02 Aligned_cols=156 Identities=28% Similarity=0.332 Sum_probs=115.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-CCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~V~~~~~l 236 (379)
++.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++...+. ++.+...|+.+.+ ..+++||+|++..++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 4789999999999999999886 78999999999999999998876654 5788888877664 345789999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhc--cCCCCCCCHHHHHHHHHhCCCcee
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA--YYLPAWCSTADYVKLLQSLSLEDI 314 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aGF~~v 314 (379)
+|++++..+++.+.+.|+|||.+++..+..... .................. .....+++++++.++|+++||+++
T Consensus 125 ~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v 201 (233)
T PRK05134 125 EHVPDPASFVRACAKLVKPGGLVFFSTLNRNLK---SYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQ 201 (233)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEecCCChH---HHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEe
Confidence 999999999999999999999999876432110 000000000011100000 111246689999999999999999
Q ss_pred EEEec
Q 016981 315 KAEDW 319 (379)
Q Consensus 315 ~~~~~ 319 (379)
....+
T Consensus 202 ~~~~~ 206 (233)
T PRK05134 202 DITGL 206 (233)
T ss_pred eeeeE
Confidence 87543
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.2e-18 Score=151.72 Aligned_cols=139 Identities=22% Similarity=0.278 Sum_probs=104.3
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
..+.-+.++.+.. ++.+|||+|||+|.+++..++....+|+|+|++|.+++.|++++..++++..+.....+..
T Consensus 149 T~lcL~~Le~~~~------~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~ 222 (300)
T COG2264 149 TSLCLEALEKLLK------KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLL 222 (300)
T ss_pred HHHHHHHHHHhhc------CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccch
Confidence 3444444444332 3899999999999999999997555799999999999999999999988643333333332
Q ss_pred CCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCC
Q 016981 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (379)
..+ ..++||+|+++-...-+ ..+...+.+.|||||+++++.+..+ -
T Consensus 223 ~~~-~~~~~DvIVANILA~vl---~~La~~~~~~lkpgg~lIlSGIl~~------------------------------q 268 (300)
T COG2264 223 EVP-ENGPFDVIVANILAEVL---VELAPDIKRLLKPGGRLILSGILED------------------------------Q 268 (300)
T ss_pred hhc-ccCcccEEEehhhHHHH---HHHHHHHHHHcCCCceEEEEeehHh------------------------------H
Confidence 222 23689999998743333 6889999999999999999985321 1
Q ss_pred HHHHHHHHHhCCCceeEEE
Q 016981 299 TADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 299 ~~~~~~~l~~aGF~~v~~~ 317 (379)
.+.+.+.++++||+++.+.
T Consensus 269 ~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 269 AESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred HHHHHHHHHhCCCeEeEEE
Confidence 4567888999999998875
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-16 Score=145.86 Aligned_cols=136 Identities=18% Similarity=0.279 Sum_probs=108.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++++..++ ++.+...|+...++ +++||+|++..+++|
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI-QEEYDFILSTVVLMF 196 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc-cCCccEEEEcchhhh
Confidence 569999999999999999987 78999999999999999999988776 68888889877655 678999999999999
Q ss_pred CC--CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 239 ~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
++ +...+++++.++|+|||++++.........+.. ...+..+++++++++++ +|+++..
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~-----------------~p~~~~~~~~el~~~~~--~~~i~~~ 257 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP-----------------MPFSFTFKEGELKDYYQ--DWEIVKY 257 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC-----------------CCCCcccCHHHHHHHhC--CCEEEEE
Confidence 85 457899999999999999777653322211100 01123468899999985 4888766
Q ss_pred E
Q 016981 317 E 317 (379)
Q Consensus 317 ~ 317 (379)
.
T Consensus 258 ~ 258 (287)
T PRK12335 258 N 258 (287)
T ss_pred e
Confidence 3
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.6e-16 Score=137.14 Aligned_cols=152 Identities=24% Similarity=0.304 Sum_probs=116.2
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC-CCcccEEEecccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~V~~~~~l 236 (379)
++.+|||+|||+|.++..+++. +.+++|+|+++.+++.+++++...+. .++.+...|+.+.+.. .++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPL-LKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 3789999999999999988876 66899999999999999998877654 2688888998776543 3789999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHH-----HHHHHhhc--cCCCCCCCHHHHHHHHHhC
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQE-----LLKKICDA--YYLPAWCSTADYVKLLQSL 309 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~l~~a 309 (379)
+|+.++..+++++.++|+|||.+++....... ...... +....... .....+.+.+++.++++++
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 194 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFSTINRTP--------KSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESA 194 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEecCCCc--------hHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc
Confidence 99999999999999999999999987653211 011111 01111000 1112356889999999999
Q ss_pred CCceeEEEec
Q 016981 310 SLEDIKAEDW 319 (379)
Q Consensus 310 GF~~v~~~~~ 319 (379)
||+++++...
T Consensus 195 G~~i~~~~~~ 204 (224)
T TIGR01983 195 GLRVKDVKGL 204 (224)
T ss_pred CCeeeeeeeE
Confidence 9999987643
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.3e-16 Score=132.27 Aligned_cols=155 Identities=25% Similarity=0.396 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 016981 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (379)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~ 215 (379)
...+-..+++..+++.. ..+|.|+|||+|..+..|++++ ++.++|+|.|+.|++.|+++. ++++|..+
T Consensus 14 eRtRPa~dLla~Vp~~~-----~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~a 82 (257)
T COG4106 14 ERTRPARDLLARVPLER-----PRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEA 82 (257)
T ss_pred hccCcHHHHHhhCCccc-----cceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecc
Confidence 33445667777777665 8999999999999999999999 889999999999999998865 68999999
Q ss_pred cCCCCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHh-------
Q 016981 216 DALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC------- 288 (379)
Q Consensus 216 d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 288 (379)
|+.... ++..+|+++++-+|++++|-.++|..+...|.|||+|.+.....-+. . .+..+....
T Consensus 83 Dl~~w~-p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~de-----p----sH~~mr~~A~~~p~~~ 152 (257)
T COG4106 83 DLRTWK-PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDE-----P----SHRLMRETADEAPFAQ 152 (257)
T ss_pred cHhhcC-CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCc-----h----hHHHHHHHHhcCchhh
Confidence 998873 36789999999999999999999999999999999999976432211 1 111222111
Q ss_pred --hc--cCCCCCCCHHHHHHHHHhCCCc
Q 016981 289 --DA--YYLPAWCSTADYVKLLQSLSLE 312 (379)
Q Consensus 289 --~~--~~~~~~~~~~~~~~~l~~aGF~ 312 (379)
.. .......++..|-++|...+-+
T Consensus 153 ~l~~~~~~r~~v~s~a~Yy~lLa~~~~r 180 (257)
T COG4106 153 ELGGRGLTRAPLPSPAAYYELLAPLACR 180 (257)
T ss_pred hhCccccccCCCCCHHHHHHHhCcccce
Confidence 11 1122456899999999887654
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-15 Score=129.78 Aligned_cols=99 Identities=20% Similarity=0.205 Sum_probs=85.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||+|.++..++... +.+|+|+|+|+.|++.++++++..++ ++++++++|+.+++ ..++||+|++..
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~-~~i~~i~~d~~~~~-~~~~fD~I~s~~--- 117 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL-NNVEIVNGRAEDFQ-HEEQFDVITSRA--- 117 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-CCeEEEecchhhcc-ccCCccEEEehh---
Confidence 7899999999999999998765 57899999999999999999988887 47999999998864 357899999875
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.+...+++.+.++|+|||.+++..
T Consensus 118 -~~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 118 -LASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred -hhCHHHHHHHHHHhcCCCCEEEEEc
Confidence 3455778899999999999998864
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-15 Score=129.65 Aligned_cols=125 Identities=17% Similarity=0.233 Sum_probs=101.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||+|.++..+++.. +.+|+++|+|+.+++.|++++...++ .++++..+|+.. ++ .++||+|++.....
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~-~~-~~~~D~v~~~~~~~ 108 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPI-EL-PGKADAIFIGGSGG 108 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchh-hc-CcCCCEEEECCCcc
Confidence 7899999999999999999876 57999999999999999999988776 478999888742 33 36799999876654
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEE
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
+ ...+++.+.++|+|||++++..... .+.+++.++++++||+.+++.
T Consensus 109 ~---~~~~l~~~~~~Lk~gG~lv~~~~~~------------------------------~~~~~~~~~l~~~g~~~~~~~ 155 (187)
T PRK08287 109 N---LTAIIDWSLAHLHPGGRLVLTFILL------------------------------ENLHSALAHLEKCGVSELDCV 155 (187)
T ss_pred C---HHHHHHHHHHhcCCCeEEEEEEecH------------------------------hhHHHHHHHHHHCCCCcceEE
Confidence 4 4778999999999999998865211 135677889999999887765
Q ss_pred ec
Q 016981 318 DW 319 (379)
Q Consensus 318 ~~ 319 (379)
.+
T Consensus 156 ~~ 157 (187)
T PRK08287 156 QL 157 (187)
T ss_pred EE
Confidence 44
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.4e-15 Score=127.27 Aligned_cols=131 Identities=16% Similarity=0.251 Sum_probs=107.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++++..+. ++.+..+|..+.. .++||+|+++..+++
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--CCcccEEEECCCCCC
Confidence 678999999999999999987 45999999999999999999987764 6888999986643 458999999988776
Q ss_pred CCC---------------------HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016981 239 MPD---------------------KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (379)
Q Consensus 239 ~~~---------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (379)
.++ ...+++++.++|||||++++......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~------------------------------ 144 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN------------------------------ 144 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC------------------------------
Confidence 643 24679999999999999999773211
Q ss_pred CHHHHHHHHHhCCCceeEEEecCCCcc
Q 016981 298 STADYVKLLQSLSLEDIKAEDWSQNVA 324 (379)
Q Consensus 298 ~~~~~~~~l~~aGF~~v~~~~~~~~~~ 324 (379)
...++.+.|+++||....+..+..+..
T Consensus 145 ~~~~~~~~l~~~gf~~~~~~~~~~~~~ 171 (179)
T TIGR00537 145 GEPDTFDKLDERGFRYEIVAERGLFFE 171 (179)
T ss_pred ChHHHHHHHHhCCCeEEEEEEeecCce
Confidence 256788999999999988877665543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-16 Score=124.59 Aligned_cols=94 Identities=36% Similarity=0.648 Sum_probs=80.7
Q ss_pred EEEeCCcccHHHHHHHHHc--C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecc-cc
Q 016981 162 VVDVGCGIGGSSRYLAKKF--G--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME-SG 236 (379)
Q Consensus 162 vLDiGcGtG~~~~~l~~~~--~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~-~l 236 (379)
|||+|||+|..+..+++.+ + .+++|+|+|+.|++.++++....+. ++++++.|+.++++.+++||+|++.. ++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 7999999999999999886 3 7999999999999999999987654 79999999999887788999999954 59
Q ss_pred CCCCC--HHHHHHHHHHhcCCCC
Q 016981 237 EHMPD--KSKFVSELARVTAPAG 257 (379)
Q Consensus 237 ~~~~~--~~~~l~~~~r~LkpgG 257 (379)
+|+.+ ...+++++.++|||||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 99864 4789999999999998
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-17 Score=128.70 Aligned_cols=96 Identities=29% Similarity=0.438 Sum_probs=66.7
Q ss_pred EEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--CCCCcccEEEeccccCCC
Q 016981 163 VDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMESGEHM 239 (379)
Q Consensus 163 LDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~~~l~~~ 239 (379)
||+|||+|.++..+++.+ ..+++|+|+|+.|++.+++++...+. .+......+..+.. ...++||+|++..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN-DNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-cceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999999986 67999999999999999999888653 23444444433331 123599999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCEE
Q 016981 240 PDKSKFVSELARVTAPAGTI 259 (379)
Q Consensus 240 ~~~~~~l~~~~r~LkpgG~l 259 (379)
+++..++++++++|||||+|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-15 Score=132.98 Aligned_cols=114 Identities=21% Similarity=0.336 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 016981 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (379)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~ 215 (379)
.....+.+.+..++ ++.+|||+|||+|.++..+++.. +.+++|+|+|+.|++.|+++. +++.+.++
T Consensus 29 ~~~~~~~~~l~~~~-------~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~ 95 (204)
T TIGR03587 29 AKLAMFARALNRLP-------KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQG 95 (204)
T ss_pred HHHHHHHHHHHhcC-------CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEe
Confidence 33445555555432 36789999999999999998875 679999999999999998764 35778889
Q ss_pred cCCCCCCCCCcccEEEeccccCCCC--CHHHHHHHHHHhcCCCCEEEEEeccC
Q 016981 216 DALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 216 d~~~~~~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~r~LkpgG~l~i~~~~~ 266 (379)
|+.+ ++++++||+|++..+++|++ +..++++++.+++ ++.+++.++..
T Consensus 96 d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 96 SLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred eccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 9887 88889999999999999995 3478899999987 57888888644
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.8e-16 Score=131.04 Aligned_cols=136 Identities=19% Similarity=0.294 Sum_probs=98.3
Q ss_pred EEEeCCHHHHHHHHHHHHHcC--CCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEE
Q 016981 185 QGITLSPVQAQRANALAAARG--LADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 185 ~gvD~s~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~ 262 (379)
+|+|+|+.|++.|+++.+..+ ...+++++++|++++|+++++||+|++..++++++|+.+++++++|+|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 489999999999988765322 224799999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCccccchHHHH-------HHHHHhhcc-CC----CCCCCHHHHHHHHHhCCCceeEEEecCC
Q 016981 263 TWCHRDLAPSEESLQPWEQE-------LLKKICDAY-YL----PAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (379)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~----~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 321 (379)
++..+... ....+..+... .+......+ +. ..+.+++++.++|+++||+.+.......
T Consensus 81 d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~ 150 (160)
T PLN02232 81 DFNKSNQS-VTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISG 150 (160)
T ss_pred ECCCCChH-HHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcc
Confidence 98754321 00000000000 000000000 11 1356899999999999999987765443
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-14 Score=127.51 Aligned_cols=141 Identities=18% Similarity=0.185 Sum_probs=104.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc-----------CCCCCeEEEEccCCCCCCC-CCc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR-----------GLADKVSFQVGDALQQPFP-DGQ 226 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----------~~~~~i~~~~~d~~~~~~~-~~~ 226 (379)
+.+|||+|||.|..+..|+++ |.+|+|+|+|+.+++.+.+..... .-..++++.++|+.+++.. .+.
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~ 113 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP 113 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence 679999999999999999987 899999999999999864422110 0023689999999887532 467
Q ss_pred ccEEEeccccCCCCC--HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHH
Q 016981 227 FDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVK 304 (379)
Q Consensus 227 fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (379)
||.|+-..+++|++. ...+++.+.++|||||++++..+....... .+-+...+++++.+
T Consensus 114 fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~-------------------~gpp~~~~~~eL~~ 174 (213)
T TIGR03840 114 VDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM-------------------AGPPFSVSPAEVEA 174 (213)
T ss_pred cCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC-------------------CCcCCCCCHHHHHH
Confidence 999999999999953 367899999999999998887765432110 01122458899998
Q ss_pred HHHhCCCceeEEEecC
Q 016981 305 LLQSLSLEDIKAEDWS 320 (379)
Q Consensus 305 ~l~~aGF~~v~~~~~~ 320 (379)
++. .+|++...+...
T Consensus 175 ~f~-~~~~i~~~~~~~ 189 (213)
T TIGR03840 175 LYG-GHYEIELLESRD 189 (213)
T ss_pred Hhc-CCceEEEEeecc
Confidence 886 357666655443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-15 Score=135.32 Aligned_cols=146 Identities=17% Similarity=0.189 Sum_probs=104.4
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEe
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~ 232 (379)
++.+|||+|||+|.++..+++.. +.+|+|+|+|+.|++.|+++... .++.+...+...++.++++||+|++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~----~~~~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR----PGVTFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc----CCCeEEEEecccccccCCCccEEEE
Confidence 37899999999999998887642 35999999999999999887543 3567777777777767789999999
Q ss_pred ccccCCCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHh-hc-------cCCCCCCCHHHH
Q 016981 233 MESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC-DA-------YYLPAWCSTADY 302 (379)
Q Consensus 233 ~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~ 302 (379)
+.+++|+++. ..++++++++++ |.+++.++..... .+.... ....... .. .....+++++++
T Consensus 136 ~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~-----~~~~~~-~~~~~~~~~~~~~~d~~~s~~~~~~~~el 207 (232)
T PRK06202 136 NHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL-----AYALFW-AGTRLLSRSSFVHTDGLLSVRRSYTPAEL 207 (232)
T ss_pred CCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH-----HHHHHH-HHHHHhccCceeeccchHHHHhhcCHHHH
Confidence 9999999875 579999999998 6666666543310 000000 0000000 00 011246799999
Q ss_pred HHHHHhCCCceeEE
Q 016981 303 VKLLQSLSLEDIKA 316 (379)
Q Consensus 303 ~~~l~~aGF~~v~~ 316 (379)
.+++++ ||++...
T Consensus 208 ~~ll~~-Gf~~~~~ 220 (232)
T PRK06202 208 AALAPQ-GWRVERQ 220 (232)
T ss_pred HHHhhC-CCeEEec
Confidence 999999 9997755
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.8e-15 Score=130.85 Aligned_cols=112 Identities=19% Similarity=0.211 Sum_probs=93.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
+...+++.+...+ +.+|||+|||+|..+..+++.. +++|+++|+++.+++.|+++++..++..++.+..+|..
T Consensus 60 ~~~~~~~~l~~~~-----~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~ 134 (205)
T PRK13944 60 MVAMMCELIEPRP-----GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGK 134 (205)
T ss_pred HHHHHHHhcCCCC-----CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 4555666665544 7899999999999999998876 36999999999999999999998887667999999987
Q ss_pred CCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.....++||+|++..++.+++ .++.+.|+|||+|++..
T Consensus 135 ~~~~~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 135 RGLEKHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCCccCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 7544457899999998887764 46889999999998854
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-15 Score=149.15 Aligned_cols=140 Identities=19% Similarity=0.270 Sum_probs=108.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC--CCCCCCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QPFPDGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~fD~V~~~~~l 236 (379)
+.+|||+|||+|.++..+++. +.+|+|+|+++.|++.+++... ..+++.++++|+.. +++++++||+|++..++
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~~---~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l 113 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESING---HYKNVKFMCADVTSPDLNISDGSVDLIFSNWLL 113 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHhc---cCCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence 679999999999999999987 5799999999999998765332 23579999999863 56778899999999999
Q ss_pred CCCCC--HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcee
Q 016981 237 EHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (379)
Q Consensus 237 ~~~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 314 (379)
+|+++ ...++++++++|||||++++.+.+......... ......+.+...|.+++.++||..+
T Consensus 114 ~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 114 MYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKR---------------KNNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred HhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccc---------------cCCCCeecChHHHHHHHHHheeccC
Confidence 99987 478999999999999999998854322110000 0011113357789999999999876
Q ss_pred EEE
Q 016981 315 KAE 317 (379)
Q Consensus 315 ~~~ 317 (379)
...
T Consensus 179 ~~~ 181 (475)
T PLN02336 179 DGN 181 (475)
T ss_pred CCC
Confidence 543
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.64 E-value=9e-15 Score=117.75 Aligned_cols=112 Identities=20% Similarity=0.194 Sum_probs=90.5
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-C
Q 016981 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q 220 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~ 220 (379)
..+++.+.+.. +.+|||+|||+|.++..+++.. +.+|+++|+|+.+++.++++++..+. .++.+...|+.. .
T Consensus 9 ~~~~~~~~~~~-----~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~ 82 (124)
T TIGR02469 9 ALTLSKLRLRP-----GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-SNIVIVEGDAPEAL 82 (124)
T ss_pred HHHHHHcCCCC-----CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-CceEEEeccccccC
Confidence 33455555443 6799999999999999999986 57999999999999999999888776 378898888765 2
Q ss_pred CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+...++||+|++.....+ ..++++++++.|||||++++..
T Consensus 83 ~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 83 EDSLPEPDRVFIGGSGGL---LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hhhcCCCCEEEECCcchh---HHHHHHHHHHHcCCCCEEEEEe
Confidence 333468999998765443 3689999999999999999864
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-15 Score=132.03 Aligned_cols=104 Identities=24% Similarity=0.303 Sum_probs=88.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC-CCCC--CCCCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQQP--FPDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~--~~~~~fD~V~~~~ 234 (379)
+.+|||+|||+|..+..+++.. +.+|+|+|+|+.+++.|++++...++ .++.++++|+ +.++ +++++||+|+++.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 7899999999999999999876 56899999999999999999988776 5799999999 6665 6678999999876
Q ss_pred ccCCCC--------CHHHHHHHHHHhcCCCCEEEEEe
Q 016981 235 SGEHMP--------DKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 235 ~l~~~~--------~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
...+.. ....++++++++|||||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 543321 13678999999999999999875
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.64 E-value=9e-15 Score=127.54 Aligned_cols=145 Identities=22% Similarity=0.308 Sum_probs=103.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-C-CCCCCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q-PFPDGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~fD~V~~~~~l 236 (379)
+.+|||+|||+|.++..+++..+..++|+|+|+.+++.+++ .+++++.+|+.+ + ++++++||+|+++.++
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~--------~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l 85 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA--------RGVNVIQGDLDEGLEAFPDKSFDYVILSQTL 85 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH--------cCCeEEEEEhhhcccccCCCCcCEEEEhhHh
Confidence 67999999999999999987666789999999999998864 247788888875 4 4667899999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHH-Hh---h----ccC---CCCCCCHHHHHHH
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK-IC---D----AYY---LPAWCSTADYVKL 305 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~----~~~---~~~~~~~~~~~~~ 305 (379)
+|++++..+++++.|.+++ +++...... .... ...+... .. . .+. ...+++.+++.++
T Consensus 86 ~~~~d~~~~l~e~~r~~~~---~ii~~p~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l 154 (194)
T TIGR02081 86 QATRNPEEILDEMLRVGRH---AIVSFPNFG-------YWRV-RWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDL 154 (194)
T ss_pred HcCcCHHHHHHHHHHhCCe---EEEEcCChh-------HHHH-HHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHH
Confidence 9999999999999887654 333321100 0000 0000000 00 0 000 1136799999999
Q ss_pred HHhCCCceeEEEecCCC
Q 016981 306 LQSLSLEDIKAEDWSQN 322 (379)
Q Consensus 306 l~~aGF~~v~~~~~~~~ 322 (379)
++++||+++....+...
T Consensus 155 l~~~Gf~v~~~~~~~~~ 171 (194)
T TIGR02081 155 CGELNLRILDRAAFDVD 171 (194)
T ss_pred HHHCCCEEEEEEEeccc
Confidence 99999999998776443
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.9e-16 Score=141.12 Aligned_cols=138 Identities=22% Similarity=0.319 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 016981 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (379)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~ 215 (379)
....++.-++++.+.. ++.+|||+|||||.+++..++....+|+|+|++|.+++.|++++..+++..++.+.
T Consensus 145 H~TT~lcl~~l~~~~~------~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~-- 216 (295)
T PF06325_consen 145 HPTTRLCLELLEKYVK------PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS-- 216 (295)
T ss_dssp CHHHHHHHHHHHHHSS------TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--
T ss_pred CHHHHHHHHHHHHhcc------CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--
Confidence 3445565566665532 37899999999999999999875458999999999999999999999997766543
Q ss_pred cCCCCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCC
Q 016981 216 DALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPA 295 (379)
Q Consensus 216 d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (379)
...+ ...++||+|+++....-+ ..++..+.++|+|||+++++.+...
T Consensus 217 ~~~~--~~~~~~dlvvANI~~~vL---~~l~~~~~~~l~~~G~lIlSGIl~~---------------------------- 263 (295)
T PF06325_consen 217 LSED--LVEGKFDLVVANILADVL---LELAPDIASLLKPGGYLILSGILEE---------------------------- 263 (295)
T ss_dssp CTSC--TCCS-EEEEEEES-HHHH---HHHHHHCHHHEEEEEEEEEEEEEGG----------------------------
T ss_pred Eecc--cccccCCEEEECCCHHHH---HHHHHHHHHhhCCCCEEEEccccHH----------------------------
Confidence 2222 235899999998655444 6788889999999999999986432
Q ss_pred CCCHHHHHHHHHhCCCceeEEE
Q 016981 296 WCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 296 ~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
..+.+.+.+++ ||+.++..
T Consensus 264 --~~~~v~~a~~~-g~~~~~~~ 282 (295)
T PF06325_consen 264 --QEDEVIEAYKQ-GFELVEER 282 (295)
T ss_dssp --GHHHHHHHHHT-TEEEEEEE
T ss_pred --HHHHHHHHHHC-CCEEEEEE
Confidence 24567788876 99987765
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.8e-15 Score=126.21 Aligned_cols=104 Identities=28% Similarity=0.540 Sum_probs=87.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.++||+|||.|+.+.+|+++ |..|+++|.|+..++.+++.++..++ .++..+.|+.+..++ +.||+|++..+++|
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~l--~i~~~~~Dl~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEGL--DIRTRVADLNDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT---TEEEEE-BGCCBS-T-TTEEEEEEESSGGG
T ss_pred CCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcCc--eeEEEEecchhcccc-CCcCEEEEEEEecc
Confidence 789999999999999999998 89999999999999999999888887 499999999888764 78999999888988
Q ss_pred CCC--HHHHHHHHHHhcCCCCEEEEEeccC
Q 016981 239 MPD--KSKFVSELARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 239 ~~~--~~~~l~~~~r~LkpgG~l~i~~~~~ 266 (379)
++. ...+++.+...++|||++++..+..
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~~~~ 136 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVTFME 136 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEEEB-
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEEecc
Confidence 853 3789999999999999999876543
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.5e-15 Score=145.93 Aligned_cols=106 Identities=21% Similarity=0.201 Sum_probs=92.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--CCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~~~ 235 (379)
+.+|||+|||+|.++..+++.+ +.+|+|+|+|+.|++.|+++....+ .++.++++|+.+++ +++++||+|+++.+
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 7899999999999999998877 6899999999999999998876554 36888999998876 77899999999988
Q ss_pred cCCCC-------------CHHHHHHHHHHhcCCCCEEEEEeccC
Q 016981 236 GEHMP-------------DKSKFVSELARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 236 l~~~~-------------~~~~~l~~~~r~LkpgG~l~i~~~~~ 266 (379)
++++. +...++++++++|||||++++.+...
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 88652 45789999999999999999988543
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-14 Score=124.60 Aligned_cols=128 Identities=13% Similarity=0.199 Sum_probs=101.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CCCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~V~~~~~ 235 (379)
+.+|||+|||+|.++..+++.. +.+|+++|+++.+++.+++++...++..++.+..+|+.+. +...+.||+|++..
T Consensus 41 ~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~- 119 (198)
T PRK00377 41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG- 119 (198)
T ss_pred cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC-
Confidence 8899999999999999998764 4689999999999999999999888667899999998764 33346899999854
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeE
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 315 (379)
...+...+++++.++|||||++++.... ..+..+..+.|++.|| .++
T Consensus 120 --~~~~~~~~l~~~~~~LkpgG~lv~~~~~------------------------------~~~~~~~~~~l~~~g~-~~~ 166 (198)
T PRK00377 120 --GSEKLKEIISASWEIIKKGGRIVIDAIL------------------------------LETVNNALSALENIGF-NLE 166 (198)
T ss_pred --CcccHHHHHHHHHHHcCCCcEEEEEeec------------------------------HHHHHHHHHHHHHcCC-CeE
Confidence 3356788999999999999999874311 0134567788999999 445
Q ss_pred EEecC
Q 016981 316 AEDWS 320 (379)
Q Consensus 316 ~~~~~ 320 (379)
+..+.
T Consensus 167 ~~~~~ 171 (198)
T PRK00377 167 ITEVI 171 (198)
T ss_pred EEEEe
Confidence 54443
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.2e-15 Score=134.75 Aligned_cols=105 Identities=20% Similarity=0.322 Sum_probs=86.0
Q ss_pred CCEEEEeCCcccH----HHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHH----HcCC------------------
Q 016981 159 PKNVVDVGCGIGG----SSRYLAKKF------GAKCQGITLSPVQAQRANALAA----ARGL------------------ 206 (379)
Q Consensus 159 ~~~vLDiGcGtG~----~~~~l~~~~------~~~v~gvD~s~~~~~~a~~~~~----~~~~------------------ 206 (379)
+.+|+|+|||||. +++.+++.. +.+|+|+|+|+.|++.|++..- ..++
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 6899999999996 566666643 2589999999999999997531 0111
Q ss_pred ----CCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEEe
Q 016981 207 ----ADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 207 ----~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~ 263 (379)
..++.|.+.|+.+.+++.++||+|+|.++++|++++ .+++++++++|+|||+|++..
T Consensus 180 ~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 180 KPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred ChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 146899999999987778899999999999999644 589999999999999999864
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-14 Score=126.74 Aligned_cols=138 Identities=11% Similarity=0.163 Sum_probs=98.6
Q ss_pred HcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC----CC
Q 016981 148 FAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PF 222 (379)
Q Consensus 148 ~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~ 222 (379)
.+++.+ +.+|||+|||+|.++..+++.. ..+|+|+|+++.|++.+.++++.. .|+.++.+|+... ++
T Consensus 67 ~l~i~~-----g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l 138 (226)
T PRK04266 67 NFPIKK-----GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHV 138 (226)
T ss_pred hCCCCC-----CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhc
Confidence 455554 8999999999999999999986 468999999999999887776543 4789999998652 22
Q ss_pred CCCcccEEEeccccCCCCCH---HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCH
Q 016981 223 PDGQFDLVWSMESGEHMPDK---SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCST 299 (379)
Q Consensus 223 ~~~~fD~V~~~~~l~~~~~~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (379)
.++||+|++. +.++ ..++++++++|||||+++++..... ......+ .. ..
T Consensus 139 -~~~~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~----~d~~~~~--~~---------------~~ 191 (226)
T PRK04266 139 -VEKVDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARS----IDVTKDP--KE---------------IF 191 (226)
T ss_pred -cccCCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEeccc----ccCcCCH--HH---------------HH
Confidence 3569999853 3333 3568999999999999999522110 0000000 00 11
Q ss_pred HHHHHHHHhCCCceeEEEecC
Q 016981 300 ADYVKLLQSLSLEDIKAEDWS 320 (379)
Q Consensus 300 ~~~~~~l~~aGF~~v~~~~~~ 320 (379)
++..++|+++||+.++..+..
T Consensus 192 ~~~~~~l~~aGF~~i~~~~l~ 212 (226)
T PRK04266 192 KEEIRKLEEGGFEILEVVDLE 212 (226)
T ss_pred HHHHHHHHHcCCeEEEEEcCC
Confidence 334589999999999887653
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.9e-15 Score=125.64 Aligned_cols=131 Identities=22% Similarity=0.346 Sum_probs=96.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
..++||+|||.|.++..|+.+ ..+++++|+|+.+++.|+++++.. +++++.+.|+... .|+++||+|+++.++++
T Consensus 44 y~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEF-WPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT----SS-EEEEEEES-GGG
T ss_pred cceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCC-CCCCCeeEEEEehHhHc
Confidence 689999999999999999998 469999999999999999998653 5899999999765 46799999999999999
Q ss_pred CCCH---HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeE
Q 016981 239 MPDK---SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (379)
Q Consensus 239 ~~~~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 315 (379)
+.+. ..+++.+...|+|||.|++..+.. ..+..++. .+..+.+.++|.+. |..|+
T Consensus 119 L~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd-------------------~~c~~wgh--~~ga~tv~~~~~~~-~~~~~ 176 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAPGGHLVFGHARD-------------------ANCRRWGH--AAGAETVLEMLQEH-LTEVE 176 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H-------------------HHHHHTT---S--HHHHHHHHHHH-SEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEEEecC-------------------CcccccCc--ccchHHHHHHHHHH-hhhee
Confidence 9763 578999999999999999987421 12222332 23688888888875 44444
Q ss_pred E
Q 016981 316 A 316 (379)
Q Consensus 316 ~ 316 (379)
.
T Consensus 177 ~ 177 (201)
T PF05401_consen 177 R 177 (201)
T ss_dssp E
T ss_pred E
Confidence 3
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-14 Score=118.56 Aligned_cols=150 Identities=23% Similarity=0.378 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 016981 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (379)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~ 214 (379)
.++.++++.+.....+.. -.+...+|||+|||.|.+...|++.. ....+|+|.|+.+++.|+..+++.+.++.|+|.+
T Consensus 46 ~ae~riv~wl~d~~~~~r-v~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q 124 (227)
T KOG1271|consen 46 DAEERIVDWLKDLIVISR-VSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQ 124 (227)
T ss_pred cHHHHHHHHHHhhhhhhh-hcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEE
Confidence 344556666555544111 11124499999999999999999876 4569999999999999999999999987799999
Q ss_pred ccCCCCCCCCCcccEEEeccccCCC---CC-----HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHH
Q 016981 215 GDALQQPFPDGQFDLVWSMESGEHM---PD-----KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK 286 (379)
Q Consensus 215 ~d~~~~~~~~~~fD~V~~~~~l~~~---~~-----~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (379)
.|+.+..+..++||+|+--.++..+ ++ +...+..+.++|+|||+++|..-
T Consensus 125 ~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC---------------------- 182 (227)
T KOG1271|consen 125 LDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC---------------------- 182 (227)
T ss_pred eeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec----------------------
Confidence 9999877778999999977766554 22 24578889999999999999762
Q ss_pred HhhccCCCCCCCHHHHHHHHHhCCCceeEEE
Q 016981 287 ICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
-+|.+++.+.++.-||+.....
T Consensus 183 ---------N~T~dELv~~f~~~~f~~~~tv 204 (227)
T KOG1271|consen 183 ---------NFTKDELVEEFENFNFEYLSTV 204 (227)
T ss_pred ---------CccHHHHHHHHhcCCeEEEEee
Confidence 1378899999999999877664
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.1e-14 Score=124.97 Aligned_cols=141 Identities=18% Similarity=0.160 Sum_probs=103.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc-----------CCCCCeEEEEccCCCCCCC-CCc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR-----------GLADKVSFQVGDALQQPFP-DGQ 226 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----------~~~~~i~~~~~d~~~~~~~-~~~ 226 (379)
+.+|||+|||.|..+..|+++ |.+|+|+|+|+.+++.+.+..... -...++++.++|+.+++.. .+.
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~ 116 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD 116 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence 679999999999999999987 899999999999999864321100 0124689999999887432 368
Q ss_pred ccEEEeccccCCCCC--HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHH
Q 016981 227 FDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVK 304 (379)
Q Consensus 227 fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (379)
||+|+-..+++|++. ..++++.+.++|||||.+++.......... .+-+...+++++.+
T Consensus 117 fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~-------------------~gPp~~~~~~el~~ 177 (218)
T PRK13255 117 VDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEEL-------------------AGPPFSVSDEEVEA 177 (218)
T ss_pred eeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccC-------------------CCCCCCCCHHHHHH
Confidence 999999999999963 478999999999999986665543321100 01122458999999
Q ss_pred HHHhCCCceeEEEecC
Q 016981 305 LLQSLSLEDIKAEDWS 320 (379)
Q Consensus 305 ~l~~aGF~~v~~~~~~ 320 (379)
++. -+|++...+...
T Consensus 178 ~~~-~~~~i~~~~~~~ 192 (218)
T PRK13255 178 LYA-GCFEIELLERQD 192 (218)
T ss_pred Hhc-CCceEEEeeecc
Confidence 885 337776665444
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.4e-15 Score=127.17 Aligned_cols=156 Identities=22% Similarity=0.290 Sum_probs=113.7
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
.++.+++..+.... -.++||+|||||..+..+-.. ..+++|+|+|.+|++.|.++ |+.+ .+.+.|+..
T Consensus 112 ~~l~emI~~~~~g~-----F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~ 179 (287)
T COG4976 112 ELLAEMIGKADLGP-----FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVL 179 (287)
T ss_pred HHHHHHHHhccCCc-----cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhc----cchH--HHHHHHHHH
Confidence 36677777766554 789999999999999998887 56899999999999998874 2221 123334332
Q ss_pred C-C-CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016981 220 Q-P-FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (379)
Q Consensus 220 ~-~-~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (379)
+ + ...+.||+|++..|+.++.+.+.++.-+...|+|||.+.++.-...+... -.+.+ ...+ -+
T Consensus 180 Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~--f~l~p---------s~Ry----AH 244 (287)
T COG4976 180 FLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGG--FVLGP---------SQRY----AH 244 (287)
T ss_pred HhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCC--eecch---------hhhh----cc
Confidence 2 1 34678999999999999999999999999999999999998643322100 00111 1111 23
Q ss_pred CHHHHHHHHHhCCCceeEEEecCCC
Q 016981 298 STADYVKLLQSLSLEDIKAEDWSQN 322 (379)
Q Consensus 298 ~~~~~~~~l~~aGF~~v~~~~~~~~ 322 (379)
+...++.+++..||+++++++.+..
T Consensus 245 ~~~YVr~~l~~~Gl~~i~~~~ttiR 269 (287)
T COG4976 245 SESYVRALLAASGLEVIAIEDTTIR 269 (287)
T ss_pred chHHHHHHHHhcCceEEEeecccch
Confidence 6777899999999999999866543
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-14 Score=131.10 Aligned_cols=120 Identities=21% Similarity=0.267 Sum_probs=92.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++..+++..++.+..+| .+||+|+++....
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~--------~~fD~Vvani~~~ 190 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD--------LKADVIVANILAN 190 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC--------CCcCEEEEcCcHH
Confidence 38899999999999999887753346999999999999999999887764344433222 2799999875432
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEE
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
. ...++.++.++|||||+++++++... ..+++.+.+++.||+.+...
T Consensus 191 ~---~~~l~~~~~~~LkpgG~lilsgi~~~------------------------------~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 191 P---LLELAPDLARLLKPGGRLILSGILEE------------------------------QADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred H---HHHHHHHHHHhcCCCcEEEEEECcHh------------------------------hHHHHHHHHHHCCCEEEEEE
Confidence 2 36789999999999999999874311 35578889999999988764
Q ss_pred e
Q 016981 318 D 318 (379)
Q Consensus 318 ~ 318 (379)
.
T Consensus 238 ~ 238 (250)
T PRK00517 238 E 238 (250)
T ss_pred E
Confidence 3
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.7e-14 Score=131.92 Aligned_cols=101 Identities=26% Similarity=0.337 Sum_probs=83.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++..+++..++.+...+.. +..+++||+|+++.....
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~~~~~~fDlVvan~~~~~ 237 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--QPIEGKADVIVANILAEV 237 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--cccCCCceEEEEecCHHH
Confidence 789999999999999988876445899999999999999999998887666777766633 233578999999765433
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
...++.++.++|||||+++++.+
T Consensus 238 ---l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 238 ---IKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred ---HHHHHHHHHHHcCCCcEEEEEeC
Confidence 36789999999999999999874
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.4e-14 Score=119.79 Aligned_cols=148 Identities=23% Similarity=0.300 Sum_probs=109.2
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC--CCCCCcccEEEeccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMES 235 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~~~~ 235 (379)
++.+|||+|||.|.+...|.+..+.+.+|+|+++..+..+.++ .+.++++|+++. .|++++||.|+++.+
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~gL~~f~d~sFD~VIlsqt 84 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEGLADFPDQSFDYVILSQT 84 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHhHhhCCCCCccEEehHhH
Confidence 4899999999999999999987688999999999998877662 477899998774 489999999999999
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHh-------hccC-CC--CCCCHHHHHHH
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC-------DAYY-LP--AWCSTADYVKL 305 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~--~~~~~~~~~~~ 305 (379)
+.++.++..+|+++.|+ |...+++-.+. ..+.....-++..-. ..|| .| ++.|..+++++
T Consensus 85 LQ~~~~P~~vL~EmlRV---gr~~IVsFPNF-------g~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~l 154 (193)
T PF07021_consen 85 LQAVRRPDEVLEEMLRV---GRRAIVSFPNF-------GHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDL 154 (193)
T ss_pred HHhHhHHHHHHHHHHHh---cCeEEEEecCh-------HHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHH
Confidence 99999999999999777 44555554221 111111111101000 0111 11 46799999999
Q ss_pred HHhCCCceeEEEecCCCc
Q 016981 306 LQSLSLEDIKAEDWSQNV 323 (379)
Q Consensus 306 l~~aGF~~v~~~~~~~~~ 323 (379)
.++.|+++++...+...-
T Consensus 155 c~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 155 CRELGIRIEERVFLDGGR 172 (193)
T ss_pred HHHCCCEEEEEEEEcCCC
Confidence 999999999887665544
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-13 Score=122.32 Aligned_cols=146 Identities=17% Similarity=0.196 Sum_probs=104.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
.+...+..+.+.+ +.+|||+|||+|.++..+++....+|+++|+|+.+++.+++++...++ ++.+..+|+.+.
T Consensus 24 ~l~~~l~~~~~~~-----~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~ 96 (223)
T PRK14967 24 LLADALAAEGLGP-----GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA 96 (223)
T ss_pred HHHHHHHhcccCC-----CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh
Confidence 3444444444443 789999999999999999876334999999999999999999887765 588888888653
Q ss_pred CCCCCcccEEEeccccCCCCC---------------------HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchH
Q 016981 221 PFPDGQFDLVWSMESGEHMPD---------------------KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPW 279 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~---------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 279 (379)
+++++||+|+++-....-.. ...+++++.++|||||++++.....
T Consensus 97 -~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~------------- 162 (223)
T PRK14967 97 -VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL------------- 162 (223)
T ss_pred -ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc-------------
Confidence 45678999998743221111 2567889999999999999864211
Q ss_pred HHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEecCCCcc
Q 016981 280 EQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVA 324 (379)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~ 324 (379)
....++.+.+++.||..........+..
T Consensus 163 -----------------~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 190 (223)
T PRK14967 163 -----------------SGVERTLTRLSEAGLDAEVVASQWIPFG 190 (223)
T ss_pred -----------------cCHHHHHHHHHHCCCCeEEEEeeccCcc
Confidence 0234566778888887555544444333
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.7e-14 Score=130.24 Aligned_cols=94 Identities=30% Similarity=0.437 Sum_probs=80.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcC----CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFG----AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~----~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~ 234 (379)
..+|||+|||+|.++..+++... ..++|+|+|+.|++.|+++. +++.+.++|+.++|+++++||+|++..
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~~~ 159 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIRIY 159 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEEec
Confidence 57899999999999999987652 37999999999999998753 478899999999999999999999865
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
. ...+++++|+|||||++++....
T Consensus 160 ~-------~~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 160 A-------PCKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred C-------CCCHHHHHhhccCCCEEEEEeCC
Confidence 4 12468899999999999998743
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.9e-14 Score=125.01 Aligned_cols=112 Identities=21% Similarity=0.299 Sum_probs=92.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 217 (379)
.+...+++.+.+.+ +.+|||+|||+|..+..+++.. +.+|+++|+++.+++.|+++++..+. .++.+..+|.
T Consensus 63 ~~~~~~~~~l~~~~-----g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~ 136 (212)
T PRK13942 63 HMVAIMCELLDLKE-----GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDG 136 (212)
T ss_pred HHHHHHHHHcCCCC-----cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCc
Confidence 35566666666554 8999999999999999998876 36999999999999999999998876 5899999998
Q ss_pred CCCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 218 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.....+.++||+|++.....++ ...+.+.|||||++++..
T Consensus 137 ~~~~~~~~~fD~I~~~~~~~~~------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 137 TLGYEENAPYDRIYVTAAGPDI------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ccCCCcCCCcCEEEECCCcccc------hHHHHHhhCCCcEEEEEE
Confidence 7765556889999998776554 346677899999988854
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.2e-14 Score=127.03 Aligned_cols=104 Identities=22% Similarity=0.330 Sum_probs=87.9
Q ss_pred CCEEEEeCCcccHH-HHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHH-cCCCCCeEEEEccCCCCCCCCCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGS-SRYLAKKF--GAKCQGITLSPVQAQRANALAAA-RGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~-~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~ 234 (379)
+.+|+|||||.|.+ +..++... +.+++|+|+++.+++.|++.+.. .++.+++.|..+|+.+.+...+.||+|++.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~- 202 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA- 202 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-
Confidence 88999999997744 44455433 67899999999999999999965 778788999999998764334789999999
Q ss_pred ccCCC--CCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 235 SGEHM--PDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 235 ~l~~~--~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+++++ +++.++++++++.|+|||.+++-.
T Consensus 203 ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 88887 688999999999999999999865
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-13 Score=123.38 Aligned_cols=139 Identities=24% Similarity=0.386 Sum_probs=106.1
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
.++..+++.+. . .+.+|||+|||+|.++..+++.. +.+++|+|+++.+++.|++++...++. ++.+..+|+.
T Consensus 75 ~l~~~~l~~~~-~-----~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~ 147 (251)
T TIGR03534 75 ELVEAALERLK-K-----GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWF 147 (251)
T ss_pred HHHHHHHHhcc-c-----CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchh
Confidence 34455555443 1 25699999999999999999876 679999999999999999999888774 7999999987
Q ss_pred CCCCCCCcccEEEeccccCC------CC--------------------CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCC
Q 016981 219 QQPFPDGQFDLVWSMESGEH------MP--------------------DKSKFVSELARVTAPAGTIIIVTWCHRDLAPS 272 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~------~~--------------------~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~ 272 (379)
+ ++++++||+|+++-.... +. ....+++++.++|+|||.+++..-
T Consensus 148 ~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~-------- 218 (251)
T TIGR03534 148 E-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG-------- 218 (251)
T ss_pred c-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC--------
Confidence 6 455789999998543221 10 013678899999999999988430
Q ss_pred ccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEE
Q 016981 273 EESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
+...+++.++|+++||+.+.+.
T Consensus 219 -----------------------~~~~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 219 -----------------------YDQGEAVRALFEAAGFADVETR 240 (251)
T ss_pred -----------------------ccHHHHHHHHHHhCCCCceEEE
Confidence 1135678899999999987663
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.5e-14 Score=120.32 Aligned_cols=127 Identities=21% Similarity=0.341 Sum_probs=100.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADK-VSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||+|.++..+++. +.+++|+|+|+.+++.+++++...++.++ +.+..+|..+. +.+++||+|+++..+.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRGDKFDVILFNPPYL 101 (188)
T ss_pred CCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccccCceEEEECCCcC
Confidence 789999999999999999988 78999999999999999999988776433 88888887653 4455899999876543
Q ss_pred CCC---------------------CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCC
Q 016981 238 HMP---------------------DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW 296 (379)
Q Consensus 238 ~~~---------------------~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (379)
+.. ....+++++.++|||||.+++.... .
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~------------------------------~ 151 (188)
T PRK14968 102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS------------------------------L 151 (188)
T ss_pred CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc------------------------------c
Confidence 311 1356899999999999998876421 1
Q ss_pred CCHHHHHHHHHhCCCceeEEE
Q 016981 297 CSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 297 ~~~~~~~~~l~~aGF~~v~~~ 317 (379)
...+++.++++++||+++.+.
T Consensus 152 ~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 152 TGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred CCHHHHHHHHHHCCCeeeeee
Confidence 135678899999999877654
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.4e-14 Score=124.14 Aligned_cols=111 Identities=23% Similarity=0.315 Sum_probs=91.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
.+..+++.+.+.+ +.+|||+|||+|.++..+++..+ .+|+++|+++.+++.|+++++..++ +++.+..+|+.
T Consensus 65 ~~~~~~~~l~~~~-----~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~ 138 (215)
T TIGR00080 65 MVAMMTELLELKP-----GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGT 138 (215)
T ss_pred HHHHHHHHhCCCC-----cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcc
Confidence 4556666666554 89999999999999999998763 4699999999999999999999887 68999999987
Q ss_pred CCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
......++||+|++.....++ ...+.+.|||||++++..
T Consensus 139 ~~~~~~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 139 QGWEPLAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred cCCcccCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEEE
Confidence 754345689999988766554 356788999999998854
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-14 Score=124.70 Aligned_cols=104 Identities=27% Similarity=0.351 Sum_probs=88.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC---CCCCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V~~~~ 234 (379)
..+|||||||+|.++..++++. ...|+|+|+++.+++.|++++...++ .|+.++.+|+.+++ ++++++|.|+++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l-~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL-KNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC-CCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 5699999999999999999987 67999999999999999999988887 48999999997653 4567899999876
Q ss_pred ccCCCCCH--------HHHHHHHHHhcCCCCEEEEEe
Q 016981 235 SGEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 235 ~l~~~~~~--------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
...+.... ..++++++++|||||.|++..
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 54433221 578999999999999998876
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-13 Score=116.58 Aligned_cols=103 Identities=31% Similarity=0.466 Sum_probs=85.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
..+|||+|||+|.++..+++.. ..+|+++|+++.+++.++++++.+++.. +.+...|..+. .++++||+|+++--++
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~-~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEA-LPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTT-CCTTCEEEEEE---SB
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccc-ccccceeEEEEccchh
Confidence 7899999999999999999986 4479999999999999999999998854 99999998664 3368999999987665
Q ss_pred CCCC-----HHHHHHHHHHhcCCCCEEEEEe
Q 016981 238 HMPD-----KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 238 ~~~~-----~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.-.+ ...+++++.+.|||||.+++..
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 4443 3788999999999999997755
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-13 Score=128.46 Aligned_cols=103 Identities=20% Similarity=0.228 Sum_probs=87.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++..++.. +..++|+|+++.|+..++++++..++. ++.+..+|+.++++++++||+|+++-....
T Consensus 183 g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~g~~-~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~ 260 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHYGIE-DFFVKRGDATKLPLSSESVDAIATDPPYGR 260 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHhCCC-CCeEEecchhcCCcccCCCCEEEECCCCcC
Confidence 889999999999999887664 889999999999999999999988875 488999999999887889999998632211
Q ss_pred --------CCC-HHHHHHHHHHhcCCCCEEEEEe
Q 016981 239 --------MPD-KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 239 --------~~~-~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
..+ ...+++++.++|||||++++..
T Consensus 261 ~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 261 STTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred cccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 111 3789999999999999998865
|
This family is found exclusively in the Archaea. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-14 Score=123.43 Aligned_cols=152 Identities=16% Similarity=0.259 Sum_probs=110.5
Q ss_pred CEEEEeCCcccHHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC----CCCCCcccEEEe
Q 016981 160 KNVVDVGCGIGGSSRYLAKKF-G--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVWS 232 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~-~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~V~~ 232 (379)
.+|||||||.|.....+.+.. . ..|++.|.||.+++..+++..... .++...+.|+... +...+++|.|++
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEE
Confidence 389999999999999998865 3 689999999999999988765432 4566666666542 466789999999
Q ss_pred ccccCCCC--CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHH---HhhccCCCCCCCHHHHHHHHH
Q 016981 233 MESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK---ICDAYYLPAWCSTADYVKLLQ 307 (379)
Q Consensus 233 ~~~l~~~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~ 307 (379)
.++|..++ ....++.+++++|||||.|++-|+...+.....-.-. +.+.. .....-..++++.+++.+++.
T Consensus 151 IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~----~~i~~nfYVRgDGT~~YfF~~eeL~~~f~ 226 (264)
T KOG2361|consen 151 IFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKG----QCISENFYVRGDGTRAYFFTEEELDELFT 226 (264)
T ss_pred EEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCC----ceeecceEEccCCceeeeccHHHHHHHHH
Confidence 99998884 3489999999999999999999987655321111000 00000 001111125789999999999
Q ss_pred hCCCceeEEE
Q 016981 308 SLSLEDIKAE 317 (379)
Q Consensus 308 ~aGF~~v~~~ 317 (379)
++||..++..
T Consensus 227 ~agf~~~~~~ 236 (264)
T KOG2361|consen 227 KAGFEEVQLE 236 (264)
T ss_pred hcccchhccc
Confidence 9999877653
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.2e-13 Score=125.66 Aligned_cols=146 Identities=21% Similarity=0.257 Sum_probs=99.5
Q ss_pred HHccCc-hhHHHhhhccccccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc
Q 016981 102 FYDESS-SLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF 180 (379)
Q Consensus 102 ~yd~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~ 180 (379)
+||..+ ..|+++.. .+.||..... ..........+.+.++ ++.+|||+|||+|..+..+++..
T Consensus 22 ~yd~~G~~lf~~i~~---~peYy~tr~E------~~il~~~~~~ia~~~~-------~~~~iLELGcGtG~~t~~Ll~~l 85 (301)
T TIGR03438 22 FYDARGSELFEQICE---LPEYYPTRTE------AAILERHADEIAAATG-------AGCELVELGSGSSRKTRLLLDAL 85 (301)
T ss_pred cccchHHHHHHHHHC---CCccccHHHH------HHHHHHHHHHHHHhhC-------CCCeEEecCCCcchhHHHHHHhh
Confidence 455543 44665543 3556653321 1223333444444432 26799999999999999999886
Q ss_pred --CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-CCCCCC----cccEEEeccccCCCCC--HHHHHHHHHH
Q 016981 181 --GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPFPDG----QFDLVWSMESGEHMPD--KSKFVSELAR 251 (379)
Q Consensus 181 --~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~----~fD~V~~~~~l~~~~~--~~~~l~~~~r 251 (379)
+.+|+|+|+|+.|++.+++++.......++.++++|+.+ .+++.. ...++++..++++++. ..++|+++++
T Consensus 86 ~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~ 165 (301)
T TIGR03438 86 RQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQ 165 (301)
T ss_pred ccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHH
Confidence 579999999999999999988764322357778999876 344332 2234444567777753 4679999999
Q ss_pred hcCCCCEEEEEe
Q 016981 252 VTAPAGTIIIVT 263 (379)
Q Consensus 252 ~LkpgG~l~i~~ 263 (379)
+|+|||.+++..
T Consensus 166 ~L~pgG~~lig~ 177 (301)
T TIGR03438 166 LLGPGGGLLIGV 177 (301)
T ss_pred hcCCCCEEEEec
Confidence 999999998754
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.5e-14 Score=110.73 Aligned_cols=105 Identities=30% Similarity=0.505 Sum_probs=88.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--CCCCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~~~l 236 (379)
|.+|||+|||+|.++..+++....+++|+|+++..++.++.++...++..+++++++|+.+.. +++++||+|+++-..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 468999999999999999988548999999999999999999999888778999999998864 778999999998766
Q ss_pred CCCC--------CHHHHHHHHHHhcCCCCEEEEEe
Q 016981 237 EHMP--------DKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 237 ~~~~--------~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.... ....+++++.++|||||.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 5331 12678999999999999998865
|
... |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.8e-13 Score=119.18 Aligned_cols=133 Identities=12% Similarity=0.084 Sum_probs=93.1
Q ss_pred CCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC---CCCCCcccEEE
Q 016981 157 KRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFPDGQFDLVW 231 (379)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~fD~V~ 231 (379)
.++.+|||+|||+|.++..+++.. ...|+++|+++.+.+...+.+... +|+.++..|+... ....++||+|+
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~vDvV~ 207 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPMVDVIF 207 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCCCCEEE
Confidence 348999999999999999999987 358999999998665554444322 4789999998642 22346899999
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHH----HHHHH
Q 016981 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADY----VKLLQ 307 (379)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~ 307 (379)
+... ...+...++.++.++|||||.|+|.. -..... .-.++++. .++|+
T Consensus 208 ~Dva--~pdq~~il~~na~r~LKpGG~~vI~i-ka~~id------------------------~g~~pe~~f~~ev~~L~ 260 (293)
T PTZ00146 208 ADVA--QPDQARIVALNAQYFLKNGGHFIISI-KANCID------------------------STAKPEVVFASEVQKLK 260 (293)
T ss_pred EeCC--CcchHHHHHHHHHHhccCCCEEEEEE-eccccc------------------------cCCCHHHHHHHHHHHHH
Confidence 8763 22233456678999999999999942 111100 00122222 37899
Q ss_pred hCCCceeEEEec
Q 016981 308 SLSLEDIKAEDW 319 (379)
Q Consensus 308 ~aGF~~v~~~~~ 319 (379)
++||+.++..+.
T Consensus 261 ~~GF~~~e~v~L 272 (293)
T PTZ00146 261 KEGLKPKEQLTL 272 (293)
T ss_pred HcCCceEEEEec
Confidence 999998887654
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.8e-13 Score=121.45 Aligned_cols=104 Identities=22% Similarity=0.339 Sum_probs=84.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc--
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES-- 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~-- 235 (379)
+.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|+++++..++..++.++.+|+.+. +++++||+|+++--
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cCCCCccEEEECCCCC
Confidence 5799999999999999999887 6799999999999999999999988877899999998542 34568999998611
Q ss_pred ----cCCC-------C------------CHHHHHHHHHHhcCCCCEEEEEe
Q 016981 236 ----GEHM-------P------------DKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 ----l~~~-------~------------~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.++ + ....+++++.++|+|||++++..
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1111 1 11567888999999999988743
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-12 Score=108.41 Aligned_cols=133 Identities=17% Similarity=0.126 Sum_probs=105.8
Q ss_pred HHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC
Q 016981 145 TLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP 223 (379)
Q Consensus 145 ~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 223 (379)
.+..+.+.+ +.+++|||||||..+..++... ..+|+++|-++.+++..++++++.++ +|+.++.+++.+.--.
T Consensus 26 ~ls~L~~~~-----g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~ 99 (187)
T COG2242 26 TLSKLRPRP-----GDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPD 99 (187)
T ss_pred HHHhhCCCC-----CCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcC
Confidence 445555544 9999999999999999999554 67999999999999999999999996 7999999998764111
Q ss_pred CCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHH
Q 016981 224 DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYV 303 (379)
Q Consensus 224 ~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (379)
..+||.|+.... ..+ +.+++.+...|||||++++..... -+.....
T Consensus 100 ~~~~daiFIGGg-~~i---~~ile~~~~~l~~ggrlV~naitl------------------------------E~~~~a~ 145 (187)
T COG2242 100 LPSPDAIFIGGG-GNI---EEILEAAWERLKPGGRLVANAITL------------------------------ETLAKAL 145 (187)
T ss_pred CCCCCEEEECCC-CCH---HHHHHHHHHHcCcCCeEEEEeecH------------------------------HHHHHHH
Confidence 227999999887 444 889999999999999999865321 1344566
Q ss_pred HHHHhCCC-ceeEEE
Q 016981 304 KLLQSLSL-EDIKAE 317 (379)
Q Consensus 304 ~~l~~aGF-~~v~~~ 317 (379)
+.+++.|| +++++.
T Consensus 146 ~~~~~~g~~ei~~v~ 160 (187)
T COG2242 146 EALEQLGGREIVQVQ 160 (187)
T ss_pred HHHHHcCCceEEEEE
Confidence 88899999 666554
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-12 Score=118.65 Aligned_cols=104 Identities=20% Similarity=0.298 Sum_probs=84.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEec----
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM---- 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~---- 233 (379)
..+|||+|||+|.++..++... +.+|+|+|+|+.+++.|+++++..++..++.++.+|+.+ +++..+||+|+++
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 3699999999999999999987 579999999999999999999988876569999999865 3444589999986
Q ss_pred ---------cccCCCC------------CHHHHHHHHHHhcCCCCEEEEEe
Q 016981 234 ---------ESGEHMP------------DKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 234 ---------~~l~~~~------------~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.++.|-+ ....++.++.++|+|||++++..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1222222 23578889999999999987744
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-13 Score=120.35 Aligned_cols=109 Identities=20% Similarity=0.263 Sum_probs=83.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
.+.++....++- +++.+|||+|||+|.++..+++.. +..|+|+|+++ |. .. +++.++++|+.
T Consensus 38 kl~~~~~~~~~~----~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~----------~~-~~v~~i~~D~~ 101 (209)
T PRK11188 38 KLDEIQQSDKLF----KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD----------PI-VGVDFLQGDFR 101 (209)
T ss_pred hhHHHHHHhccC----CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc----------CC-CCcEEEecCCC
Confidence 444445444432 247899999999999999999986 35899999998 21 12 46899999998
Q ss_pred CCC--------CCCCcccEEEeccccCCCCCH-----------HHHHHHHHHhcCCCCEEEEEecc
Q 016981 219 QQP--------FPDGQFDLVWSMESGEHMPDK-----------SKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 219 ~~~--------~~~~~fD~V~~~~~l~~~~~~-----------~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+.+ +.+++||+|++..+.++..++ ..+|+++.++|||||.+++..+.
T Consensus 102 ~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 102 DELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred ChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 853 567889999997766655432 46899999999999999997753
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-13 Score=127.44 Aligned_cols=104 Identities=22% Similarity=0.258 Sum_probs=85.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCC--CCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLA--DKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
..+|||+|||+|.++..+++++ +.+|+++|+|+.+++.|+++++.++.. .++++...|.... +++++||+|+++-.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcC
Confidence 5699999999999999999987 679999999999999999999877642 3688888887543 33468999999866
Q ss_pred cCCC---CC--HHHHHHHHHHhcCCCCEEEEEe
Q 016981 236 GEHM---PD--KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 l~~~---~~--~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
++.. .+ ..+++++++++|||||.++++.
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 6543 22 2678999999999999999985
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.2e-13 Score=125.86 Aligned_cols=104 Identities=20% Similarity=0.233 Sum_probs=89.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC--CCCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~~~~ 235 (379)
+..+||||||+|.++..+|++. ...++|+|+++.+++.|.+++...++ .|+.++.+|+..+ .++++++|.|+++..
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 6699999999999999999987 67999999999999999999998887 5899999998764 577899999998654
Q ss_pred cCCCCCH------HHHHHHHHHhcCCCCEEEEEe
Q 016981 236 GEHMPDK------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 l~~~~~~------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
..+...+ ..++++++|+|+|||.+.+.+
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 4433222 579999999999999999976
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-12 Score=116.06 Aligned_cols=111 Identities=16% Similarity=0.177 Sum_probs=88.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
....++..+...+ +.+|||+|||+|..+..+++. ..+|+++|+++.+++.++++++..++ .++.+..+|..+.
T Consensus 66 ~~~~l~~~l~~~~-----~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~ 138 (212)
T PRK00312 66 MVARMTELLELKP-----GDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGL-HNVSVRHGDGWKG 138 (212)
T ss_pred HHHHHHHhcCCCC-----CCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCC-CceEEEECCcccC
Confidence 3445555555544 889999999999999888876 45999999999999999999998877 4699999997654
Q ss_pred CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
....++||+|++...+.++ .+.+.+.|+|||++++...
T Consensus 139 ~~~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 139 WPAYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCcCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 2234789999998766554 4567899999999988653
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7e-13 Score=124.77 Aligned_cols=101 Identities=24% Similarity=0.304 Sum_probs=85.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
..+|||+|||+|.++..++++. +.+|+++|+|+.+++.|+++++.+++ ...+...|.... .++.||+|+++-.+|
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l--~~~~~~~D~~~~--~~~~fDlIvsNPPFH 272 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL--EGEVFASNVFSD--IKGRFDMIISNPPFH 272 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCEEEEcccccc--cCCCccEEEECCCcc
Confidence 4689999999999999999986 56999999999999999999998876 356777776543 257899999998887
Q ss_pred CCC-----CHHHHHHHHHHhcCCCCEEEEEe
Q 016981 238 HMP-----DKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 238 ~~~-----~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
... ...++++++.++|||||.++++.
T Consensus 273 ~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 273 DGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 632 34789999999999999999876
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-12 Score=113.69 Aligned_cols=111 Identities=21% Similarity=0.355 Sum_probs=97.7
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
..++..+++.+ +.+|||.|.|+|.++.+|+... .++|+.+|+.++..+.|++++...++.+++.+...|+.+.
T Consensus 84 ~~I~~~~gi~p-----g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~ 158 (256)
T COG2519 84 GYIVARLGISP-----GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREG 158 (256)
T ss_pred HHHHHHcCCCC-----CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccc
Confidence 45566677776 9999999999999999999866 3699999999999999999999998877799999999887
Q ss_pred CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
-+++ .||+|+. -+++|.+++..+.++|||||.+++...
T Consensus 159 ~~~~-~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 159 IDEE-DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred cccc-ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcC
Confidence 6544 8999986 579999999999999999999998763
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-12 Score=112.70 Aligned_cols=110 Identities=12% Similarity=0.050 Sum_probs=86.2
Q ss_pred HHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CC
Q 016981 145 TLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PF 222 (379)
Q Consensus 145 ~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~ 222 (379)
+++.+...+ +.+|||+|||+|.++..+++.. +.+|+++|+|+.+++.++++++..+. .+++++.+|+.+. +.
T Consensus 32 l~~~l~~~~-----~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~ 105 (196)
T PRK07402 32 LISQLRLEP-----DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQ 105 (196)
T ss_pred HHHhcCCCC-----CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhh
Confidence 344444443 7899999999999999998765 57999999999999999999988877 4799999998652 22
Q ss_pred CCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 223 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
....+|.|+... ..+...+++++.++|+|||++++...
T Consensus 106 ~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 106 LAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 223467765532 23558899999999999999999763
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.6e-12 Score=120.19 Aligned_cols=125 Identities=20% Similarity=0.257 Sum_probs=95.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC-CCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~V~~~~~l 236 (379)
+.+|||+|||+|.++..++... +.+|+|+|+|+.+++.|+++++..+. ++.+..+|+.+..++ .++||+|+++--.
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhccccccCCCccEEEECCCC
Confidence 5699999999999999998875 67999999999999999999988764 799999998654332 4579999996432
Q ss_pred CCC---------------------CC----HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc
Q 016981 237 EHM---------------------PD----KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY 291 (379)
Q Consensus 237 ~~~---------------------~~----~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (379)
..- .+ ..++++.+.+.|+|||++++.. .
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi-G-------------------------- 382 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH-G-------------------------- 382 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE-C--------------------------
Confidence 100 01 1356777788999999987633 1
Q ss_pred CCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 292 YLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 292 ~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
+...+.+.+++++.||..+++
T Consensus 383 ----~~Q~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 383 ----FDQGAAVRGVLAENGFSGVET 403 (423)
T ss_pred ----ccHHHHHHHHHHHCCCcEEEE
Confidence 013567889999999987765
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.9e-12 Score=117.57 Aligned_cols=103 Identities=21% Similarity=0.357 Sum_probs=83.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc--
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES-- 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~-- 235 (379)
..+|||+|||+|.++..++... +.+|+|+|+|+.+++.|+++++..++..++.+..+|+.+. +++++||+|+++--
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYV 212 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCCCC
Confidence 3689999999999999999887 6799999999999999999999888766899999997552 34568999998621
Q ss_pred -----------cCCCCC------------HHHHHHHHHHhcCCCCEEEEE
Q 016981 236 -----------GEHMPD------------KSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 236 -----------l~~~~~------------~~~~l~~~~r~LkpgG~l~i~ 262 (379)
+.|-+. ...+++++.++|+|||++++.
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 011111 257789999999999999874
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.6e-12 Score=116.09 Aligned_cols=125 Identities=26% Similarity=0.403 Sum_probs=96.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|++++. .....++.+..+|+... +++++||+|+++-...
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEP-LPGGRFDLIVSNPPYI 186 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCc-CCCCceeEEEECCCcC
Confidence 7899999999999999999987 5799999999999999999987 33346899999998553 3357899999853211
Q ss_pred --------------CC------------CCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc
Q 016981 238 --------------HM------------PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY 291 (379)
Q Consensus 238 --------------~~------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (379)
|- .....+++++.++|+|||++++.. .
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g-------------------------- 239 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-G-------------------------- 239 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-C--------------------------
Confidence 00 112567888889999999998833 0
Q ss_pred CCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 292 YLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 292 ~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
+...+.+.+++++.||..+..
T Consensus 240 ----~~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 240 ----YDQGEAVRALLAAAGFADVET 260 (275)
T ss_pred ----chHHHHHHHHHHhCCCceeEE
Confidence 012456888999999987665
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.9e-12 Score=113.23 Aligned_cols=132 Identities=21% Similarity=0.254 Sum_probs=107.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--CCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~~~ 235 (379)
..+|||+|||+|..+..++++. .++++|||+++.+.+.|+++.+.+++.++++++++|+.... ....+||+|+|+=-
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 7899999999999999999987 58999999999999999999999999999999999998863 44457999999754
Q ss_pred cCCCC------------------CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016981 236 GEHMP------------------DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (379)
Q Consensus 236 l~~~~------------------~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (379)
..-.. +.+.+++.+.++|||||.+.++-.. .
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~-------------------------------e 173 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP-------------------------------E 173 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH-------------------------------H
Confidence 43221 2367889999999999999987511 0
Q ss_pred CHHHHHHHHHhCCCceeEEEecCC
Q 016981 298 STADYVKLLQSLSLEDIKAEDWSQ 321 (379)
Q Consensus 298 ~~~~~~~~l~~aGF~~v~~~~~~~ 321 (379)
...++.++|++.+|....+.....
T Consensus 174 rl~ei~~~l~~~~~~~k~i~~V~p 197 (248)
T COG4123 174 RLAEIIELLKSYNLEPKRIQFVYP 197 (248)
T ss_pred HHHHHHHHHHhcCCCceEEEEecC
Confidence 245677888888998777665433
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-12 Score=110.31 Aligned_cols=118 Identities=22% Similarity=0.348 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 016981 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (379)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d 216 (379)
.+..+.+..++.+.+.. ..+.-|||||||+|..+..+.+. |...+|+|+|+.|++.|.++-- .-.+..+|
T Consensus 32 IQ~em~eRaLELLalp~---~~~~~iLDIGCGsGLSg~vL~~~-Gh~wiGvDiSpsML~~a~~~e~------egdlil~D 101 (270)
T KOG1541|consen 32 IQAEMAERALELLALPG---PKSGLILDIGCGSGLSGSVLSDS-GHQWIGVDISPSMLEQAVEREL------EGDLILCD 101 (270)
T ss_pred ehHHHHHHHHHHhhCCC---CCCcEEEEeccCCCcchheeccC-CceEEeecCCHHHHHHHHHhhh------hcCeeeee
Confidence 44567777777766543 24778999999999999988887 7899999999999999987431 13466777
Q ss_pred C-CCCCCCCCcccEEEeccccCCCC-------CH----HHHHHHHHHhcCCCCEEEEEec
Q 016981 217 A-LQQPFPDGQFDLVWSMESGEHMP-------DK----SKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 217 ~-~~~~~~~~~fD~V~~~~~l~~~~-------~~----~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+ +.+||.+++||.|++...+.++- ++ ..++..++.+|++|++.++.-+
T Consensus 102 MG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 102 MGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred cCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 6 45799999999999888776652 22 4578889999999999988763
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.8e-12 Score=109.99 Aligned_cols=111 Identities=19% Similarity=0.312 Sum_probs=94.4
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
.+...+++.+.+.+ +.+|||||||+|..+..|++.. .+|+.+|..+...+.|++++...|+. |+.+.++|...
T Consensus 59 ~~vA~m~~~L~~~~-----g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~ 131 (209)
T COG2518 59 HMVARMLQLLELKP-----GDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSK 131 (209)
T ss_pred HHHHHHHHHhCCCC-----CCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCccc
Confidence 36677777777765 9999999999999999999974 49999999999999999999999984 69999999876
Q ss_pred CCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
---+..+||.|+.......+|. .+.+.|||||++++-.
T Consensus 132 G~~~~aPyD~I~Vtaaa~~vP~------~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 132 GWPEEAPYDRIIVTAAAPEVPE------ALLDQLKPGGRLVIPV 169 (209)
T ss_pred CCCCCCCcCEEEEeeccCCCCH------HHHHhcccCCEEEEEE
Confidence 5334588999999988887764 3567899999999865
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-12 Score=115.20 Aligned_cols=123 Identities=18% Similarity=0.225 Sum_probs=95.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
..+|||+|||+|.++..++++. +.+|+|+|+++.+++.+++++ +++.++.+|+.+... +++||+|+++-.+.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~ 137 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES-NEKFDVVISNPPFG 137 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc-cCCCcEEEEcCCcc
Confidence 5699999999999999888875 579999999999999998763 368899999987653 46899999988888
Q ss_pred CCCC--------------------HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016981 238 HMPD--------------------KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (379)
Q Consensus 238 ~~~~--------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (379)
+.+. ..++++....+|+|+|.+.+.--..+ + + +.-.
T Consensus 138 ~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~---------------~--------y-~~sl 193 (279)
T PHA03411 138 KINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP---------------Y--------Y-DGTM 193 (279)
T ss_pred ccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc---------------c--------c-cccC
Confidence 7532 13456777889999997766521100 0 0 1134
Q ss_pred CHHHHHHHHHhCCCc
Q 016981 298 STADYVKLLQSLSLE 312 (379)
Q Consensus 298 ~~~~~~~~l~~aGF~ 312 (379)
++++|+++|+++||.
T Consensus 194 ~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 194 KSNKYLKWSKQTGLV 208 (279)
T ss_pred CHHHHHHHHHhcCcE
Confidence 799999999999997
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3e-12 Score=114.14 Aligned_cols=139 Identities=22% Similarity=0.341 Sum_probs=108.4
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 217 (379)
.-+..++..+++.+ +.+|||.|.|+|.++..|++.. .++|+.+|+.++..+.|+++++..|+.+++.+.+.|+
T Consensus 27 kD~~~I~~~l~i~p-----G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv 101 (247)
T PF08704_consen 27 KDISYILMRLDIRP-----GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDV 101 (247)
T ss_dssp HHHHHHHHHTT--T-----T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-G
T ss_pred chHHHHHHHcCCCC-----CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecce
Confidence 34566777778876 9999999999999999999877 4699999999999999999999999988999999999
Q ss_pred CCCCCC---CCcccEEEeccccCCCCCHHHHHHHHHHhc-CCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCC
Q 016981 218 LQQPFP---DGQFDLVWSMESGEHMPDKSKFVSELARVT-APAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYL 293 (379)
Q Consensus 218 ~~~~~~---~~~fD~V~~~~~l~~~~~~~~~l~~~~r~L-kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (379)
.+..+. +..+|.|+. -+++|..++..+.++| ||||++++...+.. +
T Consensus 102 ~~~g~~~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie--------------Q----------- 151 (247)
T PF08704_consen 102 CEEGFDEELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCIE--------------Q----------- 151 (247)
T ss_dssp GCG--STT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSHH--------------H-----------
T ss_pred ecccccccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCHH--------------H-----------
Confidence 765442 367999986 5689999999999999 89999998764311 1
Q ss_pred CCCCCHHHHHHHHHhCCCceeEEEe
Q 016981 294 PAWCSTADYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 294 ~~~~~~~~~~~~l~~aGF~~v~~~~ 318 (379)
.....+.|++.||..+++..
T Consensus 152 -----v~~~~~~L~~~gf~~i~~~E 171 (247)
T PF08704_consen 152 -----VQKTVEALREHGFTDIETVE 171 (247)
T ss_dssp -----HHHHHHHHHHTTEEEEEEEE
T ss_pred -----HHHHHHHHHHCCCeeeEEEE
Confidence 23345678889999887643
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.3e-12 Score=110.20 Aligned_cols=107 Identities=18% Similarity=0.230 Sum_probs=88.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH-----------cCCCCCeEEEEccCCCCCCC---C
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA-----------RGLADKVSFQVGDALQQPFP---D 224 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~-----------~~~~~~i~~~~~d~~~~~~~---~ 224 (379)
+.+||+.|||.|..+..|+++ |.+|+|+|+|+.+++.+.+.... .--..++++.++|+.+++.. .
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 689999999999999999998 88999999999999987653200 00124799999999998532 2
Q ss_pred CcccEEEeccccCCCCC--HHHHHHHHHHhcCCCCEEEEEeccC
Q 016981 225 GQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 225 ~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~i~~~~~ 266 (379)
+.||+|+-...+++++. ..+..+.+.++|+|||.+++..+..
T Consensus 123 ~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 123 PVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred CCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 68999999999999964 3789999999999999999987643
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-12 Score=113.46 Aligned_cols=152 Identities=22% Similarity=0.301 Sum_probs=106.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH-cC----------CCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA-RG----------LADK 209 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~----------~~~~ 209 (379)
.+.+.++.+.... +.+||..|||.|..+..|+++ |.+|+|+|+|+.+++.+.+.... .. -..+
T Consensus 25 ~L~~~~~~l~~~~-----~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 98 (218)
T PF05724_consen 25 ALVEYLDSLALKP-----GGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGR 98 (218)
T ss_dssp HHHHHHHHHTTST-----SEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSS
T ss_pred HHHHHHHhcCCCC-----CCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCc
Confidence 4444455444443 789999999999999999998 88999999999999998543221 00 1236
Q ss_pred eEEEEccCCCCCCC-CCcccEEEeccccCCCC--CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHH
Q 016981 210 VSFQVGDALQQPFP-DGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK 286 (379)
Q Consensus 210 i~~~~~d~~~~~~~-~~~fD~V~~~~~l~~~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (379)
|++.++|+..++.. .++||+|+=...++.++ ...+..+.+.++|+|||.+++.....+....
T Consensus 99 i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~--------------- 163 (218)
T PF05724_consen 99 ITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM--------------- 163 (218)
T ss_dssp EEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS---------------
T ss_pred eEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC---------------
Confidence 88999999987533 35799999988888885 4588999999999999996665543322111
Q ss_pred HhhccCCCCCCCHHHHHHHHHhCCCceeEEEe
Q 016981 287 ICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 318 (379)
.+-|...+.+++.+++. .+|++...+.
T Consensus 164 ----~GPPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 164 ----EGPPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp ----SSSS----HHHHHHHHT-TTEEEEEEEE
T ss_pred ----CCcCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 01122347889999998 8998887765
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.1e-12 Score=112.75 Aligned_cols=146 Identities=24% Similarity=0.279 Sum_probs=103.6
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC
Q 016981 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 221 (379)
..++....... ..+|||||+|+|.++..+++++ +.+++..|+ |..++.+++ .++++++.+|+. .+
T Consensus 90 ~~~~~~~d~~~-----~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f-~~ 155 (241)
T PF00891_consen 90 DILLEAFDFSG-----FKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFF-DP 155 (241)
T ss_dssp HHHHHHSTTTT-----SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TT-TC
T ss_pred hhhhccccccC-----ccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHH-hh
Confidence 44455555544 6799999999999999999999 889999999 888888887 369999999998 66
Q ss_pred CCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCC--CEEEEEeccCCCCCCCccccc-hHHHHHHHHHhhccCCCCC
Q 016981 222 FPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPA--GTIIIVTWCHRDLAPSEESLQ-PWEQELLKKICDAYYLPAW 296 (379)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~Lkpg--G~l~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 296 (379)
+|. +|+|+..++||++++. ..+|+++++.|+|| |+|+|.+...++......... .....+.--.... + .-
T Consensus 156 ~P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~-G--~~ 230 (241)
T PF00891_consen 156 LPV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTG-G--KE 230 (241)
T ss_dssp CSS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHS-S--S-
T ss_pred hcc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcC-C--CC
Confidence 665 9999999999999765 68999999999999 999999987555332222110 0111111111111 1 13
Q ss_pred CCHHHHHHHHH
Q 016981 297 CSTADYVKLLQ 307 (379)
Q Consensus 297 ~~~~~~~~~l~ 307 (379)
.|.++|+++|+
T Consensus 231 rt~~e~~~ll~ 241 (241)
T PF00891_consen 231 RTEEEWEALLK 241 (241)
T ss_dssp EEHHHHHHHHH
T ss_pred cCHHHHHHHhC
Confidence 48899998874
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-11 Score=123.03 Aligned_cols=126 Identities=15% Similarity=0.163 Sum_probs=96.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc--
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES-- 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~-- 235 (379)
+.+|||+|||+|.++..++... +.+|+++|+|+.+++.|++++...++.+++.+..+|+.+ +++.++||+|+++--
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCC
Confidence 5689999999999999999876 679999999999999999999888876789999999754 234568999998521
Q ss_pred ------------cCCCC--------C----HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc
Q 016981 236 ------------GEHMP--------D----KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY 291 (379)
Q Consensus 236 ------------l~~~~--------~----~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (379)
..|-+ + ...+++++.++|+|||.+++.. ..
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi-g~------------------------- 271 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI-GF------------------------- 271 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE-CC-------------------------
Confidence 11111 1 1456778889999999988742 11
Q ss_pred CCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 292 YLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 292 ~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
...+.+.+++++.||..+.+
T Consensus 272 -----~q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 272 -----KQEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred -----chHHHHHHHHHhcCCCceEE
Confidence 13556778888899986654
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.9e-12 Score=117.13 Aligned_cols=111 Identities=14% Similarity=0.261 Sum_probs=89.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
++..+++.+.+.+ +.+|||+|||+|.++..+++..+ ..|+++|+++.+++.|+++++..+. +++.+..+|+.
T Consensus 68 l~a~ll~~L~i~~-----g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~ 141 (322)
T PRK13943 68 LMALFMEWVGLDK-----GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGY 141 (322)
T ss_pred HHHHHHHhcCCCC-----CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChh
Confidence 4555666655544 78999999999999999998763 4799999999999999999988887 57999999987
Q ss_pred CCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
..+...++||+|++...+.++ ...+.+.|+|||++++..
T Consensus 142 ~~~~~~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 142 YGVPEFAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hcccccCCccEEEECCchHHh------HHHHHHhcCCCCEEEEEe
Confidence 665445689999987655543 345678999999988854
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.3e-12 Score=111.63 Aligned_cols=113 Identities=23% Similarity=0.345 Sum_probs=88.6
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 016981 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (379)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d 216 (379)
-.+...+++.+.+.+ +.+|||||||+|..+..++...+ ..|+++|..+...+.|++++...+. .|+.+..+|
T Consensus 58 P~~~a~~l~~L~l~p-----g~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gd 131 (209)
T PF01135_consen 58 PSMVARMLEALDLKP-----GDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGD 131 (209)
T ss_dssp HHHHHHHHHHTTC-T-----T-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-
T ss_pred HHHHHHHHHHHhcCC-----CCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcc
Confidence 346777888887765 99999999999999999998764 3799999999999999999999887 489999999
Q ss_pred CCCCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 217 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.....-...+||.|++......++ ..+.+.||+||+|++-.
T Consensus 132 g~~g~~~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 132 GSEGWPEEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GGGTTGGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEE
T ss_pred hhhccccCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEE
Confidence 866433457899999988876553 33677899999999854
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-12 Score=110.28 Aligned_cols=144 Identities=16% Similarity=0.223 Sum_probs=98.8
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
...++||.|+|.|+.+..+.-..-.+|..+|+.+..++.|++.+.... ....++++..+++...+.++||+|++.+++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 468999999999999987765555699999999999999998764411 2346788888887744457999999999999
Q ss_pred CCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeE
Q 016981 238 HMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (379)
Q Consensus 238 ~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 315 (379)
|++|. .++|+++...|+|||.+++-+-...... ..+.... .. --.+.+.+++++++||++++.
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---~~~D~~D--------sS----vTRs~~~~~~lF~~AGl~~v~ 198 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---DEFDEED--------SS----VTRSDEHFRELFKQAGLRLVK 198 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---EEEETTT--------TE----EEEEHHHHHHHHHHCT-EEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---cccCCcc--------Ce----eecCHHHHHHHHHHcCCEEEE
Confidence 99865 7999999999999999999874432211 0111000 00 012678899999999999998
Q ss_pred EE
Q 016981 316 AE 317 (379)
Q Consensus 316 ~~ 317 (379)
.+
T Consensus 199 ~~ 200 (218)
T PF05891_consen 199 EE 200 (218)
T ss_dssp EE
T ss_pred ec
Confidence 65
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.4e-11 Score=103.22 Aligned_cols=155 Identities=19% Similarity=0.169 Sum_probs=112.1
Q ss_pred EEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--C------CCCcccEEE
Q 016981 161 NVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--F------PDGQFDLVW 231 (379)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~------~~~~fD~V~ 231 (379)
+|||||||||.-+.+++..+ .....-.|+++..+...+......+++.-..-+..|+...+ . ..++||+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 69999999999999999998 67888999999998877877777776433344566766642 2 245899999
Q ss_pred eccccCCCCC--HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhC
Q 016981 232 SMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL 309 (379)
Q Consensus 232 ~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 309 (379)
+.+++|-++- .+.+++.+.++|+|||.|++......+.....+. ...+...+....+.++ ..+.+++.++.+++
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~S-N~~FD~sLr~rdp~~G---iRD~e~v~~lA~~~ 183 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSES-NAAFDASLRSRDPEWG---IRDIEDVEALAAAH 183 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcH-HHHHHHHHhcCCCCcC---ccCHHHHHHHHHHC
Confidence 9999988753 3789999999999999999988543332111111 1111222333333444 44899999999999
Q ss_pred CCceeEEEec
Q 016981 310 SLEDIKAEDW 319 (379)
Q Consensus 310 GF~~v~~~~~ 319 (379)
|++.++..++
T Consensus 184 GL~l~~~~~M 193 (204)
T PF06080_consen 184 GLELEEDIDM 193 (204)
T ss_pred CCccCccccc
Confidence 9998776544
|
The function of this family is unknown. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-11 Score=95.66 Aligned_cols=101 Identities=37% Similarity=0.578 Sum_probs=85.1
Q ss_pred EEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC-CCCcccEEEeccccCC-
Q 016981 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSMESGEH- 238 (379)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~V~~~~~l~~- 238 (379)
+|+|+|||+|..+..+++..+.+++++|+++.++..+++..... ...++.+...|+.+... ..++||+|++..++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 48999999999999998833679999999999999988544333 23578999999887653 4678999999999998
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEE
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~ 262 (379)
......+++.+.+.|+|||.+++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 677799999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.6e-12 Score=120.71 Aligned_cols=217 Identities=32% Similarity=0.430 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHccCchhHHHhhhccccccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccH
Q 016981 92 ARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGG 171 (379)
Q Consensus 92 ~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~ 171 (379)
...+.+.+..+|+...+.|...|+..+|.+.+-..... ............+... ..++..++|+|||.|.
T Consensus 54 ~~~~~e~~~~~y~~~~dl~~~~w~~~~h~~~~~e~~~~-------~~~~~~~~~~~~l~~~---~~~~~~~~~~~~g~~~ 123 (364)
T KOG1269|consen 54 TEDLPEQIAKYYNNSTDLYERNWGQSFHFGRIPEGNSN-------EMFWIRHEGIVALRES---CFPGSKVLDVGTGVGG 123 (364)
T ss_pred ccccchHHHHHhcccchhhhhhhccchhccCccchhHH-------HHHHHhhcchHHHhhc---CcccccccccCcCcCc
Confidence 45666778999999999999999999998766322211 1111111211211111 1236789999999999
Q ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCHHHHHHHHHH
Q 016981 172 SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELAR 251 (379)
Q Consensus 172 ~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r 251 (379)
...+++...++.++|+|.++..+..+.......++..+..++.+|+.+.|++++.||.+.+..+..|.++...++++++|
T Consensus 124 ~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~r 203 (364)
T KOG1269|consen 124 PSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYR 203 (364)
T ss_pred hhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhc
Confidence 99999886578999999999999999888887777777788889999999999999999999999999999999999999
Q ss_pred hcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEecCC
Q 016981 252 VTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (379)
Q Consensus 252 ~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 321 (379)
+++|||.++..+++.......... .......++..+.+.+....-..+-.+++..||..+..++...
T Consensus 204 v~kpGG~~i~~e~i~~~~~~~~~~---~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~~~~~~dl~ 270 (364)
T KOG1269|consen 204 VLKPGGLFIVKEWIKTAKLKKPNS---EHVDILLEIEGGDALPAETFNTDVFDLLKSFGFEHLKLEKDLA 270 (364)
T ss_pred ccCCCceEEeHHHHHhhhccCCCc---ccccccCceeccccccceeccccHHHHHhhccchhhhhccccc
Confidence 999999999988765432211111 1111222222222233223344577888889998887554433
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.4e-11 Score=105.99 Aligned_cols=184 Identities=22% Similarity=0.290 Sum_probs=127.8
Q ss_pred ccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC---CEEEEEeCCHHHHHHHH
Q 016981 122 FYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG---AKCQGITLSPVQAQRAN 198 (379)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~---~~v~gvD~s~~~~~~a~ 198 (379)
|.+...|...-.........+.+.+..+.... .+.+||||.||.|........... .+|.-.|.|+..++..+
T Consensus 103 yLnaiGWrGIR~Rk~~l~~~i~~ai~~L~~~g----~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~ 178 (311)
T PF12147_consen 103 YLNAIGWRGIRQRKVHLEELIRQAIARLREQG----RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR 178 (311)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHhcC----CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH
Confidence 44444443322233344555555555443222 378999999999999888887762 58999999999999999
Q ss_pred HHHHHcCCCCCeEEEEccCCCCC-C--CCCcccEEEeccccCCCCCH---HHHHHHHHHhcCCCCEEEEEeccCCCCCCC
Q 016981 199 ALAAARGLADKVSFQVGDALQQP-F--PDGQFDLVWSMESGEHMPDK---SKFVSELARVTAPAGTIIIVTWCHRDLAPS 272 (379)
Q Consensus 199 ~~~~~~~~~~~i~~~~~d~~~~~-~--~~~~fD~V~~~~~l~~~~~~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~ 272 (379)
+.++..|+.+-++|.++|+.+.. + -+...++++.+..++.++|. ...+..+++++.|||+++.+.. |.
T Consensus 179 ~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQ------Pw 252 (311)
T PF12147_consen 179 ALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQ------PW 252 (311)
T ss_pred HHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCC------CC
Confidence 99999999766799999987741 2 13457999999999999885 5678999999999999998762 11
Q ss_pred ccccchHHHHHHHHH-hhccCCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 273 EESLQPWEQELLKKI-CDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 273 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
.+.+......+.+.. ...|.+ ...+..++.++.++|||+-+..
T Consensus 253 HPQle~IAr~LtsHr~g~~WvM-RrRsq~EmD~Lv~~aGF~K~~q 296 (311)
T PF12147_consen 253 HPQLEMIARVLTSHRDGKAWVM-RRRSQAEMDQLVEAAGFEKIDQ 296 (311)
T ss_pred CcchHHHHHHHhcccCCCceEE-EecCHHHHHHHHHHcCCchhhh
Confidence 121211111111111 112222 3469999999999999986554
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.1e-11 Score=106.13 Aligned_cols=101 Identities=25% Similarity=0.372 Sum_probs=78.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C-CCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-FPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~~~~fD~V~~~~~ 235 (379)
+.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++..++ +++..+|+.+. + ...++||+|+++--
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~~~~fDlVv~NPP 162 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTALRGRVDILAANAP 162 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhcCCCEeEEEECCC
Confidence 4689999999999999999876 5699999999999999999987654 47888887653 2 11357999998742
Q ss_pred cC------CCC----------------C----HHHHHHHHHHhcCCCCEEEEEe
Q 016981 236 GE------HMP----------------D----KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 l~------~~~----------------~----~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.. .++ | ...+++.+.++|||||++++..
T Consensus 163 y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 163 YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 21 110 1 1467778889999999998764
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-10 Score=106.85 Aligned_cols=123 Identities=23% Similarity=0.346 Sum_probs=93.3
Q ss_pred EEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc--C
Q 016981 161 NVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG--E 237 (379)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l--~ 237 (379)
+|||+|||||..+..++... .++|+|+|+|+.+++.|++++..+++ .++.++..|..+. . .++||+|+++=-. .
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~-~-~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEP-L-RGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccc-c-CCceeEEEeCCCCCCC
Confidence 79999999999999999987 46999999999999999999999988 5666777665442 2 2489999986321 1
Q ss_pred C---C-C-----CH--------------HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCC
Q 016981 238 H---M-P-----DK--------------SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP 294 (379)
Q Consensus 238 ~---~-~-----~~--------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (379)
- . + +| .+++.++.+.|+|||.+++..-
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g------------------------------ 239 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG------------------------------ 239 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC------------------------------
Confidence 1 1 0 11 4577888899999998887541
Q ss_pred CCCCHHHHHHHHHhCC-CceeEEE
Q 016981 295 AWCSTADYVKLLQSLS-LEDIKAE 317 (379)
Q Consensus 295 ~~~~~~~~~~~l~~aG-F~~v~~~ 317 (379)
+...+.+.+++++.| |..+...
T Consensus 240 -~~q~~~v~~~~~~~~~~~~v~~~ 262 (280)
T COG2890 240 -LTQGEAVKALFEDTGFFEIVETL 262 (280)
T ss_pred -CCcHHHHHHHHHhcCCceEEEEE
Confidence 114667889999999 6655543
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-11 Score=118.04 Aligned_cols=108 Identities=18% Similarity=0.230 Sum_probs=86.5
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC--CCCcccEEEec-
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF--PDGQFDLVWSM- 233 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~fD~V~~~- 233 (379)
++.+|||+|||+|..+..+++.. +++|+++|+++.+++.+++++++.|+..++.+..+|....+. +.++||.|++.
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDa 317 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDA 317 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcC
Confidence 38899999999999999999876 479999999999999999999998875334446667655433 46789999852
Q ss_pred -----cccCCCCC----------------HHHHHHHHHHhcCCCCEEEEEecc
Q 016981 234 -----ESGEHMPD----------------KSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 234 -----~~l~~~~~----------------~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+++.+.++ ..++|.++.++|||||+|++++.+
T Consensus 318 PcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 318 PCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred CCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 45555444 257999999999999999998854
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.9e-11 Score=118.18 Aligned_cols=106 Identities=19% Similarity=0.268 Sum_probs=88.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----CCCCcccEEE
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVW 231 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~ 231 (379)
++.+|||+|||+|..+..+++.. .++|+++|+++.+++.++++++..|+. ++.+..+|+...+ +..++||.|+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccccccccCCEEE
Confidence 38899999999999999999876 358999999999999999999999884 6999999998765 3457899999
Q ss_pred ec------cccCCCCC----------------HHHHHHHHHHhcCCCCEEEEEec
Q 016981 232 SM------ESGEHMPD----------------KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 232 ~~------~~l~~~~~----------------~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+. +++.+-++ ..++|.++.++|||||+|+.++.
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 63 34444443 25789999999999999998874
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.5e-12 Score=108.08 Aligned_cols=102 Identities=18% Similarity=0.209 Sum_probs=75.0
Q ss_pred CEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCC
Q 016981 160 KNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHM 239 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~ 239 (379)
..++|+|||+|..++.++..+ .+|+|+|+|+.|++.|++.....-..........+..++--.+++.|+|++...+|++
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~-k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHY-KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred ceEEEeccCCCcchHHHHHhh-hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence 389999999998888888874 6999999999999998875432211111222222333332237899999999999987
Q ss_pred CCHHHHHHHHHHhcCCCC-EEEEEe
Q 016981 240 PDKSKFVSELARVTAPAG-TIIIVT 263 (379)
Q Consensus 240 ~~~~~~l~~~~r~LkpgG-~l~i~~ 263 (379)
|.++++++++|+||+.| .+++-.
T Consensus 114 -dle~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 114 -DLERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred -chHHHHHHHHHHcCCCCCEEEEEE
Confidence 77899999999999877 444433
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.1e-11 Score=109.82 Aligned_cols=106 Identities=11% Similarity=0.247 Sum_probs=84.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CCCCCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~V~~~~~l 236 (379)
+.+|||||||+|.++..+++.. +.+++++|+++.+++.|++.+...+..++++++.+|+.+. .-..++||+|++...-
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~ 146 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGFD 146 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCCC
Confidence 6799999999999999999887 6799999999999999999886544446899999998653 2224689999975311
Q ss_pred -CCCC---CHHHHHHHHHHhcCCCCEEEEEec
Q 016981 237 -EHMP---DKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 237 -~~~~---~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
...+ ...++++++.++|+|||++++..+
T Consensus 147 ~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 147 GEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 1111 126899999999999999998654
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.5e-11 Score=106.44 Aligned_cols=103 Identities=20% Similarity=0.285 Sum_probs=85.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C-----CCCCcccEE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-----FPDGQFDLV 230 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-----~~~~~fD~V 230 (379)
+.+|||+|||+|..+..++... +++|+++|+++.+++.|+++++..|+.++++++.+|+.+. + .+.++||+|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 7899999999999988888765 4699999999999999999999999988899999998763 2 124689999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
++...- +....++..+.+.|+|||.+++-..
T Consensus 149 fiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 149 FVDADK---PNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred EECCCH---HHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 875321 2346789999999999999887653
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.8e-11 Score=114.95 Aligned_cols=105 Identities=21% Similarity=0.302 Sum_probs=84.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--CCCCcccEEEecc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSME 234 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~~ 234 (379)
++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.++++++..|+ ++.+.++|+.+.+ +..++||.|++.-
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhhcccCCCCEEEECC
Confidence 48899999999999999999986 46999999999999999999998876 4789999998753 3457899999432
Q ss_pred ------ccCCCC------C----------HHHHHHHHHHhcCCCCEEEEEec
Q 016981 235 ------SGEHMP------D----------KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 235 ------~l~~~~------~----------~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
++.+-+ . ...++..+.++|||||++++++.
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 111111 1 13689999999999999999874
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.3e-11 Score=104.85 Aligned_cols=96 Identities=21% Similarity=0.334 Sum_probs=78.2
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
...++||||.|.|..+..++..+ .+|++++.|+.|....++ .| .+++ |..+..-.+.+||+|.|.++|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f-~~v~aTE~S~~Mr~rL~~----kg----~~vl--~~~~w~~~~~~fDvIscLNvLD 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF-KEVYATEASPPMRWRLSK----KG----FTVL--DIDDWQQTDFKFDVISCLNVLD 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc-ceEEeecCCHHHHHHHHh----CC----CeEE--ehhhhhccCCceEEEeehhhhh
Confidence 47899999999999999999875 589999999999665544 33 3322 3333332356899999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.-.+|..+|+.+++.|+|+|+++++..
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEEEE
Confidence 999999999999999999999999763
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.4e-11 Score=108.60 Aligned_cols=106 Identities=15% Similarity=0.160 Sum_probs=85.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEec--
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-- 233 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~-- 233 (379)
++.+|||+|||+|..+..+++.. ...|+++|+++.+++.++++++..++ .++.+...|+...+...+.||+|++.
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 38899999999999999998876 35899999999999999999999887 47999999987765445679999863
Q ss_pred ----cccCCCCC----------------HHHHHHHHHHhcCCCCEEEEEec
Q 016981 234 ----ESGEHMPD----------------KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 234 ----~~l~~~~~----------------~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.++.+-++ ...+|+++.++|||||+|+.++-
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 12222111 13589999999999999998773
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.7e-11 Score=115.20 Aligned_cols=106 Identities=19% Similarity=0.299 Sum_probs=85.9
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEec--
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-- 233 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~-- 233 (379)
++.+|||+|||+|..+..+++.. +.+|+++|+|+.+++.++++++..|+ .++.+.++|+...+ ++++||+|++.
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~-~~~~fD~Vl~D~P 327 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFS-PEEQPDAILLDAP 327 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCcccccc-cCCCCCEEEEcCC
Confidence 37899999999999999988865 46999999999999999999999887 47999999998765 45789999952
Q ss_pred ----cccCCCCC----------------HHHHHHHHHHhcCCCCEEEEEecc
Q 016981 234 ----ESGEHMPD----------------KSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 234 ----~~l~~~~~----------------~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
.++..-++ ...+|.++.++|||||++++++.+
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 12211111 136899999999999999998743
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-10 Score=111.89 Aligned_cols=116 Identities=23% Similarity=0.378 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 016981 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (379)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d 216 (379)
....+++.+++.+...+ +.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++++.+++ .++.|..+|
T Consensus 281 ~~e~l~~~vl~~l~~~~-----~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~d 353 (443)
T PRK13168 281 VNQKMVARALEWLDPQP-----GDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGL-DNVTFYHAN 353 (443)
T ss_pred HHHHHHHHHHHHhcCCC-----CCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEeC
Confidence 34557777777765443 789999999999999999987 57999999999999999999998887 479999999
Q ss_pred CCCC----CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 217 ALQQ----PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 217 ~~~~----~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.+. ++.+++||+|++.---.- ....+..+.+ ++|++.++++-
T Consensus 354 ~~~~l~~~~~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 354 LEEDFTDQPWALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hHHhhhhhhhhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEEEe
Confidence 8652 244568999987432111 2455655555 68999888865
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-11 Score=105.98 Aligned_cols=150 Identities=19% Similarity=0.163 Sum_probs=113.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
...++|||||-|.+...+....-.+++-+|.|-.|++.++..- ..+ -.+...++|-+.++|.++++|+|+++..+|+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~--i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPS--IETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCc--eEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 5689999999999999998876458999999999999887531 112 2467788998999999999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc----CCCCCCCHHHHHHHHHhCCCcee
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY----YLPAWCSTADYVKLLQSLSLEDI 314 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~aGF~~v 314 (379)
+.|....+.++...|||+|.++-+-+..+...+.+..++ +.+..... ++.++.-..++..+|.+|||..+
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slq------LAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~ 223 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQ------LAELEREGGISPHISPFTQVRDIGNLLTRAGFSML 223 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhh------HHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccc
Confidence 999999999999999999998877665544332222221 22222222 22245556778899999999876
Q ss_pred EEE
Q 016981 315 KAE 317 (379)
Q Consensus 315 ~~~ 317 (379)
.+.
T Consensus 224 tvD 226 (325)
T KOG2940|consen 224 TVD 226 (325)
T ss_pred eec
Confidence 553
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.3e-11 Score=114.90 Aligned_cols=107 Identities=19% Similarity=0.254 Sum_probs=87.3
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-CCCCcccEEEec-
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSM- 233 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~V~~~- 233 (379)
++.+|||+|||+|..+..++... +.+|+++|+|+.+++.+++++++.|+. ++.+...|+..++ +..++||.|++.
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEEEECC
Confidence 38899999999999999999876 569999999999999999999998884 6899999988765 446789999962
Q ss_pred --cccCCC---CC----------------HHHHHHHHHHhcCCCCEEEEEecc
Q 016981 234 --ESGEHM---PD----------------KSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 234 --~~l~~~---~~----------------~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
..+..+ ++ ..++|.++.+.|||||.+++++.+
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 122222 21 146789999999999999988754
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.8e-11 Score=105.69 Aligned_cols=103 Identities=26% Similarity=0.328 Sum_probs=85.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||.|.++..+++.. ..+++-+|++..+++.|++++..+++. +..++..|..+. .. ++||+|+++=-+|
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~-~~~v~~s~~~~~-v~-~kfd~IisNPPfh 235 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE-NTEVWASNLYEP-VE-GKFDLIISNPPFH 235 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC-ccEEEEeccccc-cc-ccccEEEeCCCcc
Confidence 5599999999999999999998 679999999999999999999998873 445666665443 33 3899999998777
Q ss_pred CCCCH-----HHHHHHHHHhcCCCCEEEEEec
Q 016981 238 HMPDK-----SKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 238 ~~~~~-----~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
-=.+. .+++.+..+.|++||.|.|+.-
T Consensus 236 ~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 236 AGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred CCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 43322 4899999999999999999873
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-10 Score=99.64 Aligned_cols=109 Identities=22% Similarity=0.283 Sum_probs=82.6
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC
Q 016981 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 222 (379)
+.+++.+.... +.+|||+|||+|.++..++++ +.+|+++|+++.+++.+++++.. .++++++.+|+.+.++
T Consensus 3 ~~i~~~~~~~~-----~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~ 73 (169)
T smart00650 3 DKIVRAANLRP-----GDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDL 73 (169)
T ss_pred HHHHHhcCCCC-----cCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCc
Confidence 44555555544 789999999999999999998 78999999999999999988754 2489999999999887
Q ss_pred CCCcccEEEeccccCCCCCHHHHHHHHHHh--cCCCCEEEEEe
Q 016981 223 PDGQFDLVWSMESGEHMPDKSKFVSELARV--TAPAGTIIIVT 263 (379)
Q Consensus 223 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~--LkpgG~l~i~~ 263 (379)
++.+||.|+++-.+ |+. ...+..+.+. +.++|.+++..
T Consensus 74 ~~~~~d~vi~n~Py-~~~--~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 74 PKLQPYKVVGNLPY-NIS--TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred cccCCCEEEECCCc-ccH--HHHHHHHHhcCCCcceEEEEEEH
Confidence 77779999886443 332 3444444433 34677776653
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.3e-11 Score=101.96 Aligned_cols=126 Identities=17% Similarity=0.268 Sum_probs=83.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
-++.+++.+...+ +...|-|+|||.+.++..+.. +.+|...|+-. .|-.+..+|+...
T Consensus 59 Pvd~iI~~l~~~~----~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva----------------~n~~Vtacdia~v 116 (219)
T PF05148_consen 59 PVDVIIEWLKKRP----KSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVA----------------PNPRVTACDIANV 116 (219)
T ss_dssp HHHHHHHHHCTS-----TTS-EEEES-TT-HHHHH--S-----EEEEESS-----------------SSTTEEES-TTS-
T ss_pred cHHHHHHHHHhcC----CCEEEEECCCchHHHHHhccc--CceEEEeeccC----------------CCCCEEEecCccC
Confidence 4455555554332 367999999999998866543 35899999954 2445688999999
Q ss_pred CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (379)
|+++++.|++++...|.- .|+..++.|+.|+|||||.|.|++.... +.+.+
T Consensus 117 PL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~SR----------------------------f~~~~ 167 (219)
T PF05148_consen 117 PLEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKSR----------------------------FENVK 167 (219)
T ss_dssp S--TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGGG-----------------------------S-HH
T ss_pred cCCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEeccc----------------------------CcCHH
Confidence 999999999998877765 5889999999999999999999984321 22577
Q ss_pred HHHHHHHhCCCceeEEE
Q 016981 301 DYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 301 ~~~~~l~~aGF~~v~~~ 317 (379)
.+.+.++..||+.....
T Consensus 168 ~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 168 QFIKALKKLGFKLKSKD 184 (219)
T ss_dssp HHHHHHHCTTEEEEEEE
T ss_pred HHHHHHHHCCCeEEecc
Confidence 88899999999988754
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=101.24 Aligned_cols=94 Identities=21% Similarity=0.359 Sum_probs=72.4
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--------CCCCcc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~f 227 (379)
++.+|||+|||+|.++..++++. ..+|+++|+|+.+ .. +++.+.++|+.+.+ ++.++|
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~~~~~~ 99 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERVGDDKV 99 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHhCCCCc
Confidence 48899999999999999998876 3579999999854 11 46888888987642 456789
Q ss_pred cEEEeccccC--------CCC---CHHHHHHHHHHhcCCCCEEEEEe
Q 016981 228 DLVWSMESGE--------HMP---DKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 228 D~V~~~~~l~--------~~~---~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|+|++....+ |.. +...++.++.++|+|||++++..
T Consensus 100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 9999864321 111 12678999999999999999865
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.6e-11 Score=121.16 Aligned_cols=105 Identities=19% Similarity=0.189 Sum_probs=84.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEccCCCC-CCCCCcccEEEeccc-
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQ-PFPDGQFDLVWSMES- 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~-~~~~~~fD~V~~~~~- 235 (379)
+.+|||+|||+|.++..++.....+|+++|+|+.+++.|+++++.+++. .+++++++|+.+. .-..++||+|++.--
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~ 618 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPT 618 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCC
Confidence 7899999999999999999863347999999999999999999999885 5799999998653 111468999998521
Q ss_pred ----------cCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 236 ----------GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 ----------l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.....+...++..+.++|+|||.+++..
T Consensus 619 f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 619 FSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 1112234678888999999999988764
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.6e-11 Score=108.97 Aligned_cols=105 Identities=18% Similarity=0.272 Sum_probs=83.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--C--CCCeEEEEccCCCC-CCCCCcccEEEe
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--L--ADKVSFQVGDALQQ-PFPDGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~--~~~i~~~~~d~~~~-~~~~~~fD~V~~ 232 (379)
+.+||+||||+|..+..+++.. ..+|+++|+++.+++.|++.+...+ . .++++++.+|+... ....++||+|++
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 156 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIV 156 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEE
Confidence 6899999999999999998864 4689999999999999999886532 1 46899999998763 334678999998
Q ss_pred ccccCCCCC----HHHHHHHHHHhcCCCCEEEEEe
Q 016981 233 MESGEHMPD----KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 233 ~~~l~~~~~----~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
...-.+.+. ..++++.+.+.|+|||.+++..
T Consensus 157 D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 157 DSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred CCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 643332222 2678899999999999988753
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-10 Score=112.95 Aligned_cols=104 Identities=18% Similarity=0.257 Sum_probs=84.6
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--CCCCcccEEEec
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSM 233 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~ 233 (379)
++.+|||+|||+|..+..+++.. +++|+++|+++.+++.++++++..|+. ++.+.++|+.+.+ ++ ++||+|++.
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~-~~fD~Vl~D 327 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFA-EKFDKILVD 327 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhc-ccCCEEEEc
Confidence 37899999999999999999876 569999999999999999999998884 5999999998753 33 789999974
Q ss_pred c------ccCCCCC----------------HHHHHHHHHHhcCCCCEEEEEe
Q 016981 234 E------SGEHMPD----------------KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 234 ~------~l~~~~~----------------~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
- ++.+-++ ...+|.++.++|||||+++.++
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 2 1222111 1357999999999999999876
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.9e-11 Score=109.41 Aligned_cols=107 Identities=21% Similarity=0.248 Sum_probs=78.1
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC---------CCCCeEEEEccCCCC----CCCC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG---------LADKVSFQVGDALQQ----PFPD 224 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---------~~~~i~~~~~d~~~~----~~~~ 224 (379)
++.+|||+|||-|....-.....-..++|+|++...++.|++|..... ..-...|+.+|.... .+++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 589999999998887666665545699999999999999999983311 112466788887643 1333
Q ss_pred --CcccEEEeccccCCCCC----HHHHHHHHHHhcCCCCEEEEEec
Q 016981 225 --GQFDLVWSMESGEHMPD----KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 225 --~~fD~V~~~~~l~~~~~----~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
..||+|-|.+.+|+.-. ...+|+++.+.|+|||+++.+.+
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 59999999999998832 25699999999999999999874
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-10 Score=110.88 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=81.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEccCCCCC--C--CCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQP--F--PDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~--~--~~~~fD~V~~~ 233 (379)
+.+|||+|||+|.++..++.....+|+++|+|+.+++.|+++++.+++. .+++++.+|+.+.. + ..++||+|++.
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD 300 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence 7899999999999988766543448999999999999999999999885 47999999987641 1 24689999976
Q ss_pred cccCCCC----------CHHHHHHHHHHhcCCCCEEEEEe
Q 016981 234 ESGEHMP----------DKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 234 ~~l~~~~----------~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
--. ... +...++..+.++|+|||.++...
T Consensus 301 PP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 301 PPK-FVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred CCC-CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 332 111 12445567789999999998866
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.8e-10 Score=98.75 Aligned_cols=103 Identities=30% Similarity=0.462 Sum_probs=83.1
Q ss_pred CEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C--CCCCcccEEEeccc
Q 016981 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P--FPDGQFDLVWSMES 235 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~--~~~~~fD~V~~~~~ 235 (379)
..+||||||.|.+...+|... ...++|+|++...+..+.+++...++ +|+.++.+|+... . ++++++|.|+.++.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 389999999999999999998 78999999999999999999998887 6999999999873 2 55789999998654
Q ss_pred cCCCCCH--------HHHHHHHHHhcCCCCEEEEEe
Q 016981 236 GEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 l~~~~~~--------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
=-+.... ..++..++++|+|||.|.+.+
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 4443211 579999999999999999876
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.6e-10 Score=116.13 Aligned_cols=104 Identities=25% Similarity=0.276 Sum_probs=79.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC---------------CCCeEEEEccCCCCCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGL---------------ADKVSFQVGDALQQPF 222 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~---------------~~~i~~~~~d~~~~~~ 222 (379)
+.+|||+|||+|..++.+++.. ..+|+|+|+|+.+++.|+++++.+++ .++++|+++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 5689999999999999999987 57999999999999999999987543 2479999999876421
Q ss_pred C-CCcccEEEeccccC--------------C------------C--------CC----HHHHHHHHHHhcCCCCEEEEE
Q 016981 223 P-DGQFDLVWSMESGE--------------H------------M--------PD----KSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 223 ~-~~~fD~V~~~~~l~--------------~------------~--------~~----~~~~l~~~~r~LkpgG~l~i~ 262 (379)
. ...||+|+++=--- | . .| ..+++.++.++|+|||++++-
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 1 23699999863210 0 0 01 156777888899999988764
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.15 E-value=5e-10 Score=104.36 Aligned_cols=105 Identities=18% Similarity=0.233 Sum_probs=79.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHH--H---HcC-CCCCeEEEEccCCCC-CCCCCcccEE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALA--A---ARG-LADKVSFQVGDALQQ-PFPDGQFDLV 230 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~--~---~~~-~~~~i~~~~~d~~~~-~~~~~~fD~V 230 (379)
+.+||++|||+|..++.+.+.. ..+|+++|+++.+++.|++.. . ... -.++++++.+|+.+. ....+.||+|
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVI 230 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVI 230 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEE
Confidence 6799999999999999888764 469999999999999999621 1 111 136899999998763 3345789999
Q ss_pred EeccccC--C-CCC--HHHHHHHHHHhcCCCCEEEEEe
Q 016981 231 WSMESGE--H-MPD--KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 231 ~~~~~l~--~-~~~--~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
++...-. . ... ..++++.+++.|+|||.+++..
T Consensus 231 IvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 231 IIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9873211 0 111 1578999999999999988764
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.9e-10 Score=96.25 Aligned_cols=148 Identities=23% Similarity=0.438 Sum_probs=95.6
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcC-------------------------------
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARG------------------------------- 205 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~------------------------------- 205 (379)
.+..+|||||.+|.++..+++.++ ..++|+||++..++.|++.++...
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 378899999999999999999994 579999999999999999764210
Q ss_pred ---CCCCeEEEEccCCC-----CCCCCCcccEEEeccccCCCC----C--HHHHHHHHHHhcCCCCEEEEEeccCCCCCC
Q 016981 206 ---LADKVSFQVGDALQ-----QPFPDGQFDLVWSMESGEHMP----D--KSKFVSELARVTAPAGTIIIVTWCHRDLAP 271 (379)
Q Consensus 206 ---~~~~i~~~~~d~~~-----~~~~~~~fD~V~~~~~l~~~~----~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~ 271 (379)
.++++.|...+..- +.+....||+|+|..+-.++. | ..+++++++++|.|||+|++--- +
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQ------p 211 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQ------P 211 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCC------c
Confidence 11122222211110 123356799999877665441 2 37899999999999999988321 1
Q ss_pred CccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhC--CCcee
Q 016981 272 SEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL--SLEDI 314 (379)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a--GF~~v 314 (379)
...+.. ..+..+..... +..-+..++.+..+|-+. ||+-+
T Consensus 212 -WksY~k-aar~~e~~~~n-y~~i~lkp~~f~~~l~q~~vgle~~ 253 (288)
T KOG2899|consen 212 -WKSYKK-AARRSEKLAAN-YFKIFLKPEDFEDWLNQIVVGLESV 253 (288)
T ss_pred -hHHHHH-HHHHHHHhhcC-ccceecCHHHHHhhhhhhhhheeee
Confidence 111111 11222222222 223356899999998876 56544
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3e-10 Score=98.83 Aligned_cols=122 Identities=17% Similarity=0.237 Sum_probs=93.6
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC
Q 016981 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (379)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 221 (379)
++.+++.+...+ ....|-|+|||.+.++. .-...|+.+|+-+ .|-++..+|+.+.|
T Consensus 168 ld~ii~~ik~r~----~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a----------------~~~~V~~cDm~~vP 223 (325)
T KOG3045|consen 168 LDVIIRKIKRRP----KNIVIADFGCGEAKIAS----SERHKVHSFDLVA----------------VNERVIACDMRNVP 223 (325)
T ss_pred HHHHHHHHHhCc----CceEEEecccchhhhhh----ccccceeeeeeec----------------CCCceeeccccCCc
Confidence 444444443332 36789999999998765 2245899999843 46677899999999
Q ss_pred CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHH
Q 016981 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (379)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (379)
+++++.|++++...|.- .|...++.+++|+|||||.+.|++... +|.+...
T Consensus 224 l~d~svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~S----------------------------Rf~dv~~ 274 (325)
T KOG3045|consen 224 LEDESVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKS----------------------------RFSDVKG 274 (325)
T ss_pred CccCcccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhh----------------------------hcccHHH
Confidence 99999999998766654 688999999999999999999998421 1235667
Q ss_pred HHHHHHhCCCceeEE
Q 016981 302 YVKLLQSLSLEDIKA 316 (379)
Q Consensus 302 ~~~~l~~aGF~~v~~ 316 (379)
+.+.|...||.....
T Consensus 275 f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 275 FVRALTKLGFDVKHK 289 (325)
T ss_pred HHHHHHHcCCeeeeh
Confidence 889999999987654
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.3e-10 Score=98.08 Aligned_cols=117 Identities=26% Similarity=0.413 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 016981 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (379)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~ 215 (379)
.-+++..+++..+ +.+||||||++|..+..+++.. +++|+.+|+++...+.|++.++..|+.++++++.+
T Consensus 33 ~g~lL~~l~~~~~--------~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~g 104 (205)
T PF01596_consen 33 TGQLLQMLVRLTR--------PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEG 104 (205)
T ss_dssp HHHHHHHHHHHHT---------SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES
T ss_pred HHHHHHHHHHhcC--------CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 3345555555543 7899999999999999999876 57999999999999999999999998889999999
Q ss_pred cCCCC-C-----CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 216 DALQQ-P-----FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 216 d~~~~-~-----~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
|+.+. + .+.++||+|+.-..= .+....+..+.++|+|||.+++-...
T Consensus 105 da~~~l~~l~~~~~~~~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 105 DALEVLPELANDGEEGQFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp -HHHHHHHHHHTTTTTSEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred ccHhhHHHHHhccCCCceeEEEEcccc---cchhhHHHHHhhhccCCeEEEEcccc
Confidence 98652 2 123689999976432 23477889999999999999886643
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.9e-10 Score=111.14 Aligned_cols=105 Identities=23% Similarity=0.281 Sum_probs=80.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHH--HHHc---CC-CCCeEEEEccCCCC-CCCCCcccEE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANAL--AAAR---GL-ADKVSFQVGDALQQ-PFPDGQFDLV 230 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~--~~~~---~~-~~~i~~~~~d~~~~-~~~~~~fD~V 230 (379)
+.+|||+|||+|..+..+++..+ .+|+++|+++.+++.++++ +... .. .++++++.+|..+. ...+++||+|
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvI 377 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVI 377 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEE
Confidence 68999999999999999987543 6999999999999999983 3221 11 25899999998763 2234789999
Q ss_pred EeccccCCCCC-----HHHHHHHHHHhcCCCCEEEEEe
Q 016981 231 WSMESGEHMPD-----KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 231 ~~~~~l~~~~~-----~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
++.......+. ..++++.+.+.|||||.+++..
T Consensus 378 i~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 378 IVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 98754333222 1468999999999999988864
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.5e-10 Score=100.81 Aligned_cols=106 Identities=23% Similarity=0.264 Sum_probs=83.5
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----CeEEEEccCCC------CCCCCCc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-----KVSFQVGDALQ------QPFPDGQ 226 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-----~i~~~~~d~~~------~~~~~~~ 226 (379)
++..++|+|||-|..++-.-+..-..++|+||....++.|+++.+...-.. .+.|+.+|... +++++.+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 378899999999998777766544589999999999999999876532111 36788888754 2445566
Q ss_pred ccEEEeccccCCCC----CHHHHHHHHHHhcCCCCEEEEEe
Q 016981 227 FDLVWSMESGEHMP----DKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 227 fD~V~~~~~l~~~~----~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
||+|-|.+++|+.- ....+|+++.+.|||||+++-+.
T Consensus 197 fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 197 FDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 99999999998762 23678999999999999998765
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.2e-09 Score=87.21 Aligned_cols=127 Identities=20% Similarity=0.139 Sum_probs=91.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|+|+|||||.++...+-....+|+|+|+++++++.++++..+.+ .++.|.++|+.+.. +.+|.|+.+=-+.-
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~--g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL--GDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC--CceEEEEcchhhcC---CccceEEECCCCcc
Confidence 78999999999999998887645789999999999999999998843 58999999998873 66888887755543
Q ss_pred C---CCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeE
Q 016981 239 M---PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (379)
Q Consensus 239 ~---~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 315 (379)
. .| ..++..+.+.- .++.+- +..-+.+-+++..+++|+++..
T Consensus 121 ~~rhaD-r~Fl~~Ale~s----~vVYsi------------------------------H~a~~~~f~~~~~~~~G~~v~~ 165 (198)
T COG2263 121 QRRHAD-RPFLLKALEIS----DVVYSI------------------------------HKAGSRDFVEKFAADLGGTVTH 165 (198)
T ss_pred ccccCC-HHHHHHHHHhh----heEEEe------------------------------eccccHHHHHHHHHhcCCeEEE
Confidence 2 23 34454444433 111111 1112566778888999999887
Q ss_pred EEecCCCccc
Q 016981 316 AEDWSQNVAP 325 (379)
Q Consensus 316 ~~~~~~~~~~ 325 (379)
......++..
T Consensus 166 ~~~~~~~iP~ 175 (198)
T COG2263 166 IERARFPIPR 175 (198)
T ss_pred EEEEEEecCc
Confidence 7666655544
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-09 Score=94.41 Aligned_cols=107 Identities=25% Similarity=0.427 Sum_probs=89.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-ccCCCC-C-CCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQQ-P-FPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~-~-~~~~~fD~V~~~ 233 (379)
+++|||||++.|..+..++... .++++.+|+++++.+.|++++++.|+.+++..+. +|..+. . ...++||+|+.-
T Consensus 60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFID 139 (219)
T COG4122 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFID 139 (219)
T ss_pred CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEe
Confidence 8899999999999999999877 4689999999999999999999999988888888 476553 2 346899999865
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCC
Q 016981 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 268 (379)
.-= .+...++..+.++|+|||.+++-....+.
T Consensus 140 adK---~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 140 ADK---ADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred CCh---hhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 321 23378999999999999999887755443
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-09 Score=98.98 Aligned_cols=104 Identities=15% Similarity=0.169 Sum_probs=86.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C-C----CCCcccEE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-F----PDGQFDLV 230 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~----~~~~fD~V 230 (379)
+.+|||||||+|..+..++... +++|+.+|.++...+.|+++++..|+.+++++..+|+.+. + + ..++||+|
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 7899999999999999999865 4689999999999999999999999988999999998663 2 1 13689999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+.-.-= .+...++..+.++|+|||.+++-...
T Consensus 199 FIDa~K---~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 199 FVDADK---RMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred EECCCH---HHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 975321 23478899999999999998886543
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.10 E-value=7e-10 Score=95.99 Aligned_cols=106 Identities=23% Similarity=0.361 Sum_probs=71.3
Q ss_pred CCCEEEEeCCcccH----HHHHHHHHc------CCEEEEEeCCHHHHHHHHHHH--------------HHc-----C---
Q 016981 158 RPKNVVDVGCGIGG----SSRYLAKKF------GAKCQGITLSPVQAQRANALA--------------AAR-----G--- 205 (379)
Q Consensus 158 ~~~~vLDiGcGtG~----~~~~l~~~~------~~~v~gvD~s~~~~~~a~~~~--------------~~~-----~--- 205 (379)
+..+|+..||+||. +++.+.+.. ..+++|+|+|+.+++.|++-. ++. +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 37899999999997 445555521 248999999999999998620 000 0
Q ss_pred -----CCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEEe
Q 016981 206 -----LADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 206 -----~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+-.++.|...|+.+.+.+.+.||+|+|.+|+.++... .++++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 1246999999998843346889999999999999654 789999999999999999964
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.3e-10 Score=101.97 Aligned_cols=105 Identities=22% Similarity=0.370 Sum_probs=81.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEccCCCC--CCCCCcccEEEe
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--L-ADKVSFQVGDALQQ--PFPDGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~--~~~~~~fD~V~~ 232 (379)
+.+||+||||.|..++.+++.. ..+|+.+|+++.+++.+++.+...+ + .++++++.+|+... ..++++||+|++
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~ 171 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIV 171 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEE
Confidence 7899999999999999998764 3589999999999999999886531 2 35899999997543 123578999998
Q ss_pred ccccCCCCC----HHHHHHHHHHhcCCCCEEEEEe
Q 016981 233 MESGEHMPD----KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 233 ~~~l~~~~~----~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
...-.+.+. ..++++.+++.|+|||.++...
T Consensus 172 D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 172 DSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred cCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 543322221 2578999999999999987643
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.2e-09 Score=95.46 Aligned_cols=151 Identities=15% Similarity=0.228 Sum_probs=96.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEE-ccCCCCC----CCCCcccEE
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR-GLADKVSFQV-GDALQQP----FPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~i~~~~-~d~~~~~----~~~~~fD~V 230 (379)
++.+|||||||+|.....++.+. +.+++|+|+++.+++.|+++++.+ ++..++.+.. .|...+. .+.+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 47899999999998877777655 789999999999999999999998 7877888864 3332221 235789999
Q ss_pred EeccccCCCCCH-----HHHHHHH----------------HHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhh
Q 016981 231 WSMESGEHMPDK-----SKFVSEL----------------ARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD 289 (379)
Q Consensus 231 ~~~~~l~~~~~~-----~~~l~~~----------------~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (379)
+|+=-++.-.+. .+-.+.+ .+++.+||.+.++... ......+....
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~m-----------i~eS~~~~~~~-- 260 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRM-----------IEESKAFAKQV-- 260 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHh-----------hHHHHHHHhhC--
Confidence 998665433211 1122222 2334456665444311 11111111111
Q ss_pred ccC---CCCCCCHHHHHHHHHhCCCceeEEEecCC
Q 016981 290 AYY---LPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (379)
Q Consensus 290 ~~~---~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 321 (379)
.++ ...--+...+.+.|++.|...+.+..+..
T Consensus 261 gwftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~~q 295 (321)
T PRK11727 261 LWFTSLVSKKENLPPLYRALKKVGAVEVKTIEMAQ 295 (321)
T ss_pred cEEEEEeeccCCHHHHHHHHHHcCCceEEEEEEeC
Confidence 111 11223789999999999998887766543
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.7e-09 Score=91.86 Aligned_cols=103 Identities=14% Similarity=0.055 Sum_probs=79.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||+|.++..++.+...+|+++|.++.+++.++++++..+. .++.++.+|+.+. +...++||+|++.=-+.
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTNALSFLAQPGTPHNVVFVDPPFR 132 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence 679999999999999876555457999999999999999999998886 4799999998663 22245799999875522
Q ss_pred CCCCHHHHHHHHHH--hcCCCCEEEEEe
Q 016981 238 HMPDKSKFVSELAR--VTAPAGTIIIVT 263 (379)
Q Consensus 238 ~~~~~~~~l~~~~r--~LkpgG~l~i~~ 263 (379)
-.-...+++.+.. +|+|+|.+++..
T Consensus 133 -~g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 133 -KGLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred -CChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 1223455666655 379999888765
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.2e-10 Score=94.95 Aligned_cols=105 Identities=21% Similarity=0.233 Sum_probs=74.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEEEEccCCCCC----CCCCcccEE
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--LADKVSFQVGDALQQP----FPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~----~~~~~fD~V 230 (379)
++.+|||+|||+|..++.++... ..+|+.+|.++ .++..+.+++.++ ...++.+...|-.+.. ....+||+|
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 48899999999999999999874 67999999999 9999999988766 4567888887764421 334689999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
++..+++.-.....+++.+.++|+|+|.++++.
T Consensus 124 lasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 124 LASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred EEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 999999987777899999999999999977765
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-09 Score=101.43 Aligned_cols=100 Identities=26% Similarity=0.268 Sum_probs=76.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC-CCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++++..++ .+++|..+|+.+... ..+.||+|++.-.-.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 689999999999999999986 68999999999999999999999888 589999999977532 245799999762211
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.-...+++ ....++|++.++++.
T Consensus 252 --G~~~~~~~-~l~~~~~~~ivyvsc 274 (315)
T PRK03522 252 --GIGKELCD-YLSQMAPRFILYSSC 274 (315)
T ss_pred --CccHHHHH-HHHHcCCCeEEEEEC
Confidence 01123333 334467877766654
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.7e-09 Score=103.58 Aligned_cols=116 Identities=19% Similarity=0.312 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 016981 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (379)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d 216 (379)
....+++.+++.+.... +.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++..+++ .+++|+.+|
T Consensus 276 ~~~~l~~~~~~~l~~~~-----~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d 348 (431)
T TIGR00479 276 QNEKLVDRALEALELQG-----EELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGT 348 (431)
T ss_pred HHHHHHHHHHHHhccCC-----CCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCC
Confidence 44456666666665443 689999999999999999987 56999999999999999999998887 589999999
Q ss_pred CCCC----CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEE
Q 016981 217 ALQQ----PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 217 ~~~~----~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~ 262 (379)
+.+. ++.+++||+|++.-.=. .-...+++.+.+ ++|++.++++
T Consensus 349 ~~~~l~~~~~~~~~~D~vi~dPPr~--G~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 349 LETVLPKQPWAGQIPDVLLLDPPRK--GCAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred HHHHHHHHHhcCCCCCEEEECcCCC--CCCHHHHHHHHh-cCCCEEEEEc
Confidence 8653 23346799998643211 112566666554 8998877764
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-09 Score=99.93 Aligned_cols=104 Identities=18% Similarity=0.279 Sum_probs=80.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEccCCCC-CCCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--L-ADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~-~~~~~~fD~V~~~ 233 (379)
+.+||+||||+|.++..+++.. ..+++++|+++.+++.+++.+...+ . .+++++..+|.... ....++||+|++.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 5699999999999999988765 4689999999999999999875432 1 24788888887542 2224789999986
Q ss_pred cccCCCC--C--HHHHHHHHHHhcCCCCEEEEE
Q 016981 234 ESGEHMP--D--KSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 234 ~~l~~~~--~--~~~~l~~~~r~LkpgG~l~i~ 262 (379)
.....-+ + ..++++.+.+.|+|||.+++.
T Consensus 153 ~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 153 STDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 5422211 2 368899999999999999886
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-09 Score=94.95 Aligned_cols=93 Identities=20% Similarity=0.280 Sum_probs=73.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~ 234 (379)
+.+|||+|||+|.++..++++. ..+|+++|+++.+++.|+++. .++.+...|+...++ +++||+|+++=
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------~~~~~~~~D~~~~~~-~~~FDlIIsNP 122 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------PEATWINADALTTEF-DTLFDMAISNP 122 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------cCCEEEEcchhcccc-cCCccEEEECC
Confidence 6799999999999999998763 358999999999999999764 358899999877654 56899999875
Q ss_pred ccCCCC--C----------HHHHHHHHHHhcCCCCE
Q 016981 235 SGEHMP--D----------KSKFVSELARVTAPAGT 258 (379)
Q Consensus 235 ~l~~~~--~----------~~~~l~~~~r~LkpgG~ 258 (379)
-+.-.. + ...++..+.++++||+.
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 444221 1 25688888887777664
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-08 Score=92.63 Aligned_cols=147 Identities=21% Similarity=0.223 Sum_probs=108.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
-...+|+|.|.|..+..+...+. ++-+++++...+..++..++ . .++.+-+|..+. .|. -|+|++.++++|
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp-~ik~infdlp~v~~~a~~~~-~----gV~~v~gdmfq~-~P~--~daI~mkWiLhd 248 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP-HIKGINFDLPFVLAAAPYLA-P----GVEHVAGDMFQD-TPK--GDAIWMKWILHD 248 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC-CCceeecCHHHHHhhhhhhc-C----Ccceeccccccc-CCC--cCeEEEEeeccc
Confidence 47899999999999999998654 68999999888887776653 2 377888887765 443 369999999999
Q ss_pred CCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCc---cccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCce
Q 016981 239 MPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSE---ESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLED 313 (379)
Q Consensus 239 ~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 313 (379)
++|. .++|++++..|+|||.+++.+...+...... .........++........ -.+..+++.++.++||.+
T Consensus 249 wtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gk---ert~~e~q~l~~~~gF~~ 325 (342)
T KOG3178|consen 249 WTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGK---ERTLKEFQALLPEEGFPV 325 (342)
T ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccce---eccHHHHHhcchhhcCce
Confidence 9876 7999999999999999999997555422221 1122222222222333222 237999999999999998
Q ss_pred eEEE
Q 016981 314 IKAE 317 (379)
Q Consensus 314 v~~~ 317 (379)
..+.
T Consensus 326 ~~~~ 329 (342)
T KOG3178|consen 326 CMVA 329 (342)
T ss_pred eEEE
Confidence 7764
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-09 Score=99.99 Aligned_cols=102 Identities=24% Similarity=0.305 Sum_probs=84.3
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+++.|||+|||||.++...++.+..+|+++|.|..+ +.|++.+..+++.+.+++..+.+++..+|.++.|+|++-++-+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 489999999999999999999866789999998755 9999999999998889999999999866678999999866554
Q ss_pred CC--C-CHHHHHHHHHHhcCCCCEEE
Q 016981 238 HM--P-DKSKFVSELARVTAPAGTII 260 (379)
Q Consensus 238 ~~--~-~~~~~l~~~~r~LkpgG~l~ 260 (379)
.+ . -...+|-.=-+.|+|||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 44 1 22455555568999999875
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.3e-09 Score=94.26 Aligned_cols=115 Identities=18% Similarity=0.248 Sum_probs=91.4
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 016981 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (379)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d 216 (379)
.+++..+++..+ ..+|||||+++|..+..++... +++|+.+|.++...+.|++.++..|+.++++++.+|
T Consensus 68 g~lL~~l~~~~~--------ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~ 139 (247)
T PLN02589 68 GQFLNMLLKLIN--------AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGP 139 (247)
T ss_pred HHHHHHHHHHhC--------CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEecc
Confidence 345555555543 7899999999999999999865 579999999999999999999999998999999999
Q ss_pred CCCC-C-C-----CCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 217 ALQQ-P-F-----PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 217 ~~~~-~-~-----~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+.+. + + ..++||+|+.-.-= ......+..+.++|+|||.+++-..
T Consensus 140 a~e~L~~l~~~~~~~~~fD~iFiDadK---~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 140 ALPVLDQMIEDGKYHGTFDFIFVDADK---DNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred HHHHHHHHHhccccCCcccEEEecCCH---HHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 8663 2 1 13689999975331 2236778888999999999877543
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-09 Score=100.08 Aligned_cols=105 Identities=17% Similarity=0.229 Sum_probs=81.5
Q ss_pred CCEEEEeCCcccH----HHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHH------------------HH-----cC-
Q 016981 159 PKNVVDVGCGIGG----SSRYLAKKF-----GAKCQGITLSPVQAQRANALA------------------AA-----RG- 205 (379)
Q Consensus 159 ~~~vLDiGcGtG~----~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~------------------~~-----~~- 205 (379)
..+|+..||+||. +++.+.+.. ..+|+|+|+|+.+++.|++-. .. .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 5899999999997 445555532 257999999999999998741 00 00
Q ss_pred ------CCCCeEEEEccCCCCCCC-CCcccEEEeccccCCCCC--HHHHHHHHHHhcCCCCEEEEEe
Q 016981 206 ------LADKVSFQVGDALQQPFP-DGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 206 ------~~~~i~~~~~d~~~~~~~-~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+...|.|...|+.+.+++ .+.||+|+|.+++.|+.. ..++++++++.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 224688999998875543 578999999999999954 5899999999999999987754
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-09 Score=94.18 Aligned_cols=136 Identities=19% Similarity=0.193 Sum_probs=98.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCC-CCCeEEEEccCCCC--CCCCCcccEEEec
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGL-ADKVSFQVGDALQQ--PFPDGQFDLVWSM 233 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~-~~~i~~~~~d~~~~--~~~~~~fD~V~~~ 233 (379)
.+.+|||...|-|..++..+++ |+ +|+.++.+|..++.|.-+--..++ ..++.++.+|+.+. .|+|.+||+|+--
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 4899999999999999999998 66 999999999999887754322111 13578999998875 5889999999842
Q ss_pred c-ccCCCCC--HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCC
Q 016981 234 E-SGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLS 310 (379)
Q Consensus 234 ~-~l~~~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 310 (379)
- =|.+... ..++.++++|+|||||+++-..-.+.... . + .--+..+.+.|+++|
T Consensus 213 PPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ry------------------r--G---~d~~~gVa~RLr~vG 269 (287)
T COG2521 213 PPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRY------------------R--G---LDLPKGVAERLRRVG 269 (287)
T ss_pred CCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccc------------------c--c---CChhHHHHHHHHhcC
Confidence 1 1111112 27899999999999999987653222110 0 0 113667889999999
Q ss_pred CceeEEE
Q 016981 311 LEDIKAE 317 (379)
Q Consensus 311 F~~v~~~ 317 (379)
|.+|...
T Consensus 270 F~~v~~~ 276 (287)
T COG2521 270 FEVVKKV 276 (287)
T ss_pred ceeeeee
Confidence 9987654
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.1e-09 Score=93.05 Aligned_cols=103 Identities=24% Similarity=0.352 Sum_probs=88.3
Q ss_pred CEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC--C-CCCCcccEEEeccc
Q 016981 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--P-FPDGQFDLVWSMES 235 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~-~~~~~fD~V~~~~~ 235 (379)
..+||||||.|.+...+|++. ...++|||+....+..|.+++.+.++. |+.+++.|+..+ - +++++.|-|+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 589999999999999999998 678999999999999999999999884 999999998775 2 44569999998765
Q ss_pred cCCCCCH--------HHHHHHHHHhcCCCCEEEEEe
Q 016981 236 GEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 l~~~~~~--------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
=-|.... ..+++.+.++|||||.|.+.+
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 5444322 579999999999999999976
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.97 E-value=9e-08 Score=86.26 Aligned_cols=165 Identities=20% Similarity=0.216 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH---cC--------
Q 016981 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA---RG-------- 205 (379)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~-------- 205 (379)
....+++.+-+..+... ......+||--|||.|+++..++.+ |..+.|.|.|--|+-..+-.+.. .+
T Consensus 36 ~~~~I~~~L~~~~p~~~-~~~~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~ 113 (270)
T PF07942_consen 36 CYSPILDELESLFPPAG-SDRSKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFV 113 (270)
T ss_pred HHHHHHHHHHHhhcccc-cCCCccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecce
Confidence 33444555544443211 1234679999999999999999998 88999999999997665553321 00
Q ss_pred ----------------------------CCCCeEEEEccCCCCCCCC---CcccEEEeccccCCCCCHHHHHHHHHHhcC
Q 016981 206 ----------------------------LADKVSFQVGDALQQPFPD---GQFDLVWSMESGEHMPDKSKFVSELARVTA 254 (379)
Q Consensus 206 ----------------------------~~~~i~~~~~d~~~~~~~~---~~fD~V~~~~~l~~~~~~~~~l~~~~r~Lk 254 (379)
.+.++....+|+.+.-.++ ++||+|+..+.+.-.++....++.|.++||
T Consensus 114 ~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLk 193 (270)
T PF07942_consen 114 HSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLK 193 (270)
T ss_pred ecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhc
Confidence 1235666777776653333 789999999888888899999999999999
Q ss_pred CCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEe
Q 016981 255 PAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 255 pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 318 (379)
|||..+=..+..-...+.. ......+ -++.+++..++++.||+++..+.
T Consensus 194 pgG~WIN~GPLlyh~~~~~-------------~~~~~sv--eLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 194 PGGYWINFGPLLYHFEPMS-------------IPNEMSV--ELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred cCCEEEecCCccccCCCCC-------------CCCCccc--CCCHHHHHHHHHHCCCEEEEEEE
Confidence 9997665553322211110 0000001 24899999999999999987765
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.4e-08 Score=88.02 Aligned_cols=106 Identities=19% Similarity=0.203 Sum_probs=82.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-----CCCCCcccEEEe
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~fD~V~~ 232 (379)
+..|||+|||+|..+..++... .+.|+++|.|+.++..|.+++++.++..++.++..+++.. +...+++|++++
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvs 228 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVS 228 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEec
Confidence 5689999999999999999877 6899999999999999999999999888888886655432 345689999998
Q ss_pred ccccCCCCC--------------------------HHHHHHHHHHhcCCCCEEEEEec
Q 016981 233 MESGEHMPD--------------------------KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 233 ~~~l~~~~~--------------------------~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+=-.-.-.| ...++.-+.|.|+|||.+.+...
T Consensus 229 NPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 229 NPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred CCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 643211111 12355667899999999888653
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-08 Score=92.78 Aligned_cols=104 Identities=20% Similarity=0.234 Sum_probs=85.2
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-cCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~fD~V~~~~~l 236 (379)
+|..|||-=||||.+++.+.-. |++++|.|++..|+.-|+.+++..++. ...+... |+..+|+++.++|.|++---.
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~-G~~viG~Did~~mv~gak~Nl~~y~i~-~~~~~~~~Da~~lpl~~~~vdaIatDPPY 274 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLM-GARVIGSDIDERMVRGAKINLEYYGIE-DYPVLKVLDATNLPLRDNSVDAIATDPPY 274 (347)
T ss_pred cCCEeecCcCCccHHHHhhhhc-CceEeecchHHHHHhhhhhhhhhhCcC-ceeEEEecccccCCCCCCccceEEecCCC
Confidence 3889999999999999987764 999999999999999999999988764 4544554 999999988889999974322
Q ss_pred CCC-----CC----HHHHHHHHHHhcCCCCEEEEEe
Q 016981 237 EHM-----PD----KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 237 ~~~-----~~----~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.-. .. ..++|+.+.++||+||++++..
T Consensus 275 Grst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 275 GRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred CcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 211 11 2678999999999999999865
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.4e-09 Score=95.16 Aligned_cols=93 Identities=20% Similarity=0.302 Sum_probs=75.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
..++.+++.+...+ +.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++...+..++++++.+|+.+
T Consensus 23 ~i~~~Iv~~~~~~~-----~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~ 96 (294)
T PTZ00338 23 LVLDKIVEKAAIKP-----TDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALK 96 (294)
T ss_pred HHHHHHHHhcCCCC-----cCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhh
Confidence 36667777766654 889999999999999999987 678999999999999999998876655689999999987
Q ss_pred CCCCCCcccEEEeccccCCCCC
Q 016981 220 QPFPDGQFDLVWSMESGEHMPD 241 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~ 241 (379)
.++ ..||.|+++- -+++..
T Consensus 97 ~~~--~~~d~VvaNl-PY~Ist 115 (294)
T PTZ00338 97 TEF--PYFDVCVANV-PYQISS 115 (294)
T ss_pred hcc--cccCEEEecC-CcccCc
Confidence 664 3689888753 344433
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.4e-09 Score=95.39 Aligned_cols=85 Identities=22% Similarity=0.277 Sum_probs=68.2
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
.++.+++.+.... +.+|||+|||+|.++..++++ +.+|+|+|+++.|++.+++++.. +++.++++|+.+.
T Consensus 30 i~~~i~~~l~~~~-----~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~ 99 (272)
T PRK00274 30 ILDKIVDAAGPQP-----GDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKV 99 (272)
T ss_pred HHHHHHHhcCCCC-----cCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcC
Confidence 5566666666554 789999999999999999998 45999999999999999987642 5899999999988
Q ss_pred CCCCCcccEEEeccc
Q 016981 221 PFPDGQFDLVWSMES 235 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~ 235 (379)
++++-.+|.|+++--
T Consensus 100 ~~~~~~~~~vv~NlP 114 (272)
T PRK00274 100 DLSELQPLKVVANLP 114 (272)
T ss_pred CHHHcCcceEEEeCC
Confidence 764322578877643
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.1e-08 Score=97.54 Aligned_cols=100 Identities=24% Similarity=0.304 Sum_probs=76.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~ 233 (379)
+..|||||||+|.++...++.. ..+|++|+-++.+....++++..+++.++|+++.+|+++...+ .++|+||+=
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 5789999999999987766543 3589999999999988888878888888999999999998654 589999963
Q ss_pred cccCCC---CCHHHHHHHHHHhcCCCCEEE
Q 016981 234 ESGEHM---PDKSKFVSELARVTAPAGTII 260 (379)
Q Consensus 234 ~~l~~~---~~~~~~l~~~~r~LkpgG~l~ 260 (379)
.+..+ .-..+.|....|.|||||.++
T Consensus 266 -lLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 -LLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred -ccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 33333 223678889999999998764
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=93.19 Aligned_cols=87 Identities=29% Similarity=0.393 Sum_probs=71.4
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
..++.+++.++... +.+|||+|||+|.++..++++ +.+|+|+|+++.+++.+++++.. .+++.++.+|+.+
T Consensus 16 ~~~~~iv~~~~~~~-----~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~ 86 (258)
T PRK14896 16 RVVDRIVEYAEDTD-----GDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALK 86 (258)
T ss_pred HHHHHHHHhcCCCC-----cCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEecccc
Confidence 35666666666554 889999999999999999998 67999999999999999988754 2589999999988
Q ss_pred CCCCCCcccEEEeccccC
Q 016981 220 QPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~ 237 (379)
.+++ .||.|+++-..+
T Consensus 87 ~~~~--~~d~Vv~NlPy~ 102 (258)
T PRK14896 87 VDLP--EFNKVVSNLPYQ 102 (258)
T ss_pred CCch--hceEEEEcCCcc
Confidence 7764 489998875543
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.2e-08 Score=80.85 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=92.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
..+.+.+..+..+ +.-|||+|.|||.++..+.++. ...++.++.|++.....+++. +.++++.+|+.
T Consensus 36 lA~~M~s~I~pes-----glpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~ 104 (194)
T COG3963 36 LARKMASVIDPES-----GLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDAF 104 (194)
T ss_pred HHHHHHhccCccc-----CCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccchh
Confidence 3444555555544 8899999999999999999886 568999999999999888765 45778999987
Q ss_pred CCC-----CCCCcccEEEeccccCCCCC--HHHHHHHHHHhcCCCCEEEEEecc
Q 016981 219 QQP-----FPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 219 ~~~-----~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
++. +.+..||.|++.--+-.++- ..++|+++...|.+||.++...+.
T Consensus 105 ~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 105 DLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred hHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 763 55678999999887777753 368899999999999999988765
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.4e-08 Score=86.33 Aligned_cols=104 Identities=9% Similarity=-0.070 Sum_probs=77.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C-C-CCC-cccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-F-PDG-QFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~-~~~-~fD~V~~~~ 234 (379)
+.+|||++||+|.++..++.+....|+++|.++.+++.++++++..+...++.++.+|+.+. . + ... .||+|+..=
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP 129 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP 129 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc
Confidence 78999999999999999999854589999999999999999999988766799999998553 2 2 122 367777543
Q ss_pred ccCCCCCHHHHHHHHH--HhcCCCCEEEEEe
Q 016981 235 SGEHMPDKSKFVSELA--RVTAPAGTIIIVT 263 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~--r~LkpgG~l~i~~ 263 (379)
-+. -.....++..+. .+|+++|.+++-.
T Consensus 130 Py~-~~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 130 PFF-NGALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred CCC-CCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 322 233355555554 3688888776644
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.7e-08 Score=84.46 Aligned_cols=111 Identities=27% Similarity=0.319 Sum_probs=81.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCE---------EEEEeCCHHHHHHHHHHHHHcCCCCCe
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAK---------CQGITLSPVQAQRANALAAARGLADKV 210 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~---------v~gvD~s~~~~~~a~~~~~~~~~~~~i 210 (379)
+...++...+... +..|||--||+|.+.++.+... ... ++|.|+++.+++.|++++...++...+
T Consensus 16 lA~~ll~la~~~~-----~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i 90 (179)
T PF01170_consen 16 LAAALLNLAGWRP-----GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI 90 (179)
T ss_dssp HHHHHHHHTT--T-----TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred HHHHHHHHhCCCC-----CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence 3334445555544 8899999999999998887665 334 889999999999999999999988889
Q ss_pred EEEEccCCCCCCCCCcccEEEeccccCCC-CCH-------HHHHHHHHHhcCCC
Q 016981 211 SFQVGDALQQPFPDGQFDLVWSMESGEHM-PDK-------SKFVSELARVTAPA 256 (379)
Q Consensus 211 ~~~~~d~~~~~~~~~~fD~V~~~~~l~~~-~~~-------~~~l~~~~r~Lkpg 256 (379)
.+...|+.++++.++++|+|+++--...- .+. ..+++++.++|++.
T Consensus 91 ~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~ 144 (179)
T PF01170_consen 91 DFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPR 144 (179)
T ss_dssp EEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTC
T ss_pred EEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCC
Confidence 99999999999778899999998665542 211 45678888999993
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.1e-08 Score=90.59 Aligned_cols=105 Identities=19% Similarity=0.295 Sum_probs=81.9
Q ss_pred CCEEEEeCCcccH----HHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHH-----cC------------------
Q 016981 159 PKNVVDVGCGIGG----SSRYLAKKF------GAKCQGITLSPVQAQRANALAAA-----RG------------------ 205 (379)
Q Consensus 159 ~~~vLDiGcGtG~----~~~~l~~~~------~~~v~gvD~s~~~~~~a~~~~~~-----~~------------------ 205 (379)
..+|.-.||+||. +++.+.+.+ ..+|+|+|+|..+++.|+.-.-. .+
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 7899999999996 455555554 25899999999999999752110 11
Q ss_pred -----CCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEEe
Q 016981 206 -----LADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 206 -----~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+-..|.|...|+...++..+.||+|+|.+|+.++..+ .+++..++..|+|||.|++-.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 1134788888887765345789999999999999654 789999999999999999854
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.4e-08 Score=94.70 Aligned_cols=100 Identities=21% Similarity=0.197 Sum_probs=78.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-CCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||+|.++..++.. +.+|+|+|+++.+++.|+++++.+++ ++++|..+|+.+.. ...++||+|++.=--.
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGL-DNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 679999999999999999976 67999999999999999999999887 48999999987642 1124699998763221
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.-...+++.+. .++|++.++++.
T Consensus 312 --G~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 312 --GIGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred --CCcHHHHHHHH-hcCCCeEEEEEe
Confidence 11245566665 479998888864
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.1e-08 Score=85.23 Aligned_cols=121 Identities=14% Similarity=0.214 Sum_probs=90.4
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC---CCcccEEEecc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP---DGQFDLVWSME 234 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~fD~V~~~~ 234 (379)
...++|||||=+......... -..|+.||+.+. .-.+.+.|+.+.|.| ++.||+|.++.
T Consensus 51 ~~lrlLEVGals~~N~~s~~~--~fdvt~IDLns~----------------~~~I~qqDFm~rplp~~~~e~FdvIs~SL 112 (219)
T PF11968_consen 51 PKLRLLEVGALSTDNACSTSG--WFDVTRIDLNSQ----------------HPGILQQDFMERPLPKNESEKFDVISLSL 112 (219)
T ss_pred ccceEEeecccCCCCcccccC--ceeeEEeecCCC----------------CCCceeeccccCCCCCCcccceeEEEEEE
Confidence 357999999976554333222 236999999762 234577888887653 67899999999
Q ss_pred ccCCCCCH---HHHHHHHHHhcCCCCE-----EEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 016981 235 SGEHMPDK---SKFVSELARVTAPAGT-----IIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLL 306 (379)
Q Consensus 235 ~l~~~~~~---~~~l~~~~r~LkpgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 306 (379)
||.+++++ -+.++.+.+.|+|+|. |+++.+..- + ...++.+.+.+.++|
T Consensus 113 VLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C----------------v-------~NSRy~~~~~l~~im 169 (219)
T PF11968_consen 113 VLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC----------------V-------TNSRYMTEERLREIM 169 (219)
T ss_pred EEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH----------------h-------hcccccCHHHHHHHH
Confidence 99999987 5799999999999999 888753210 0 012356899999999
Q ss_pred HhCCCceeEEEec
Q 016981 307 QSLSLEDIKAEDW 319 (379)
Q Consensus 307 ~~aGF~~v~~~~~ 319 (379)
+..||+.+..+.-
T Consensus 170 ~~LGf~~~~~~~~ 182 (219)
T PF11968_consen 170 ESLGFTRVKYKKS 182 (219)
T ss_pred HhCCcEEEEEEec
Confidence 9999999887543
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.1e-08 Score=88.56 Aligned_cols=103 Identities=25% Similarity=0.355 Sum_probs=75.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
..+..+++.++... +.+|||+|||+|.++..++++ +..|+++|+++.+++.+++++.. .+++.++.+|+..
T Consensus 16 ~i~~~i~~~~~~~~-----~~~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~ 86 (253)
T TIGR00755 16 SVIQKIVEAANVLE-----GDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALK 86 (253)
T ss_pred HHHHHHHHhcCCCC-----cCEEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhc
Confidence 35666777666554 889999999999999999998 46899999999999999987643 2589999999988
Q ss_pred CCCCCCccc---EEEeccccCCCCCHHHHHHHHHHhcCCCCE
Q 016981 220 QPFPDGQFD---LVWSMESGEHMPDKSKFVSELARVTAPAGT 258 (379)
Q Consensus 220 ~~~~~~~fD---~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~ 258 (379)
.+++ .|| +|+++-. +|+. ..++.++.. .+|+.
T Consensus 87 ~~~~--~~d~~~~vvsNlP-y~i~--~~il~~ll~--~~~~~ 121 (253)
T TIGR00755 87 VDLP--DFPKQLKVVSNLP-YNIS--SPLIFKLLE--KPKFR 121 (253)
T ss_pred CChh--HcCCcceEEEcCC-hhhH--HHHHHHHhc--cCCCc
Confidence 8764 466 6665533 3332 344444443 44443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.1e-08 Score=87.17 Aligned_cols=102 Identities=25% Similarity=0.296 Sum_probs=81.0
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
.++.|||+|||+|+++...+.....+|++++.| +|.+.|++..+.+.+.+++.++.+-+++..+| ++.|+|++--+-.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~ 254 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGY 254 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchh
Confidence 478999999999999999988866789999997 59999999999988889999999999998775 7799998643322
Q ss_pred CCCCH--HHHHHHHHHhcCCCCEEEE
Q 016981 238 HMPDK--SKFVSELARVTAPAGTIII 261 (379)
Q Consensus 238 ~~~~~--~~~l~~~~r~LkpgG~l~i 261 (379)
.+-+. .+..-.+++.|||.|.++=
T Consensus 255 mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 255 MLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred hhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 22221 2333346799999998754
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.6e-09 Score=100.44 Aligned_cols=100 Identities=25% Similarity=0.405 Sum_probs=72.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEE---eCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGI---TLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
-..+||+|||+|.++..|.++ +..+..+ |..+.+++.|-+ .|+|.-+ -..-...+||+++.||+|+|..+
T Consensus 118 iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfale----RGvpa~~--~~~~s~rLPfp~~~fDmvHcsrc 190 (506)
T PF03141_consen 118 IRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALE----RGVPAMI--GVLGSQRLPFPSNAFDMVHCSRC 190 (506)
T ss_pred eEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhh----cCcchhh--hhhccccccCCccchhhhhcccc
Confidence 467999999999999999987 4333332 444556666654 3554322 12233678999999999999988
Q ss_pred cCCC-CCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 236 GEHM-PDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 236 l~~~-~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+... ++..-+|-++.|+|+|||+++++...
T Consensus 191 ~i~W~~~~g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 191 LIPWHPNDGFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred cccchhcccceeehhhhhhccCceEEecCCc
Confidence 7654 33356899999999999999998743
|
; GO: 0008168 methyltransferase activity |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.1e-07 Score=82.04 Aligned_cols=112 Identities=18% Similarity=0.250 Sum_probs=93.1
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
+..++..+.+.+ +.+|||-|+|+|.++.++++.. -++++-+|+...-.+.|++.+++.|+++++.+.+-|+..
T Consensus 94 ia~I~~~L~i~P-----GsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~ 168 (314)
T KOG2915|consen 94 IAMILSMLEIRP-----GSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCG 168 (314)
T ss_pred HHHHHHHhcCCC-----CCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeeccc
Confidence 344555556665 9999999999999999999987 369999999999999999999999999999999999988
Q ss_pred CCCC--CCcccEEEeccccCCCCCHHHHHHHHHHhcCCCC-EEEEEe
Q 016981 220 QPFP--DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAG-TIIIVT 263 (379)
Q Consensus 220 ~~~~--~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG-~l~i~~ 263 (379)
..|. +..+|.|+. -++.|..++-.++.+||.+| +++...
T Consensus 169 ~GF~~ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g~r~csFS 210 (314)
T KOG2915|consen 169 SGFLIKSLKADAVFL-----DLPAPWEAIPHAAKILKDEGGRLCSFS 210 (314)
T ss_pred CCccccccccceEEE-----cCCChhhhhhhhHHHhhhcCceEEecc
Confidence 7543 567888876 56788888999999999887 554433
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.4e-08 Score=94.98 Aligned_cols=126 Identities=14% Similarity=0.190 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHcCCCCC--CCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE
Q 016981 137 AQVRMIEETLRFAGVSED--PTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213 (379)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~--~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~ 213 (379)
.+++.++..+..+.+... .......+||||||.|.++..+|... ...++|+|++..-+..+.++....++ .|+.+.
T Consensus 324 ~q~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~ 402 (506)
T PRK01544 324 VQQNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLF 402 (506)
T ss_pred HHHHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEE
Confidence 555566666665554321 12246789999999999999999998 67899999999999998888888877 589888
Q ss_pred EccCCCC--CCCCCcccEEEeccccCCCCCH--------HHHHHHHHHhcCCCCEEEEEe
Q 016981 214 VGDALQQ--PFPDGQFDLVWSMESGEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 214 ~~d~~~~--~~~~~~fD~V~~~~~l~~~~~~--------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
..|+..+ -++++++|.|+.++.=-|.... ..+++.++++|||||.+.+.+
T Consensus 403 ~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 403 PNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred cCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 8887543 3678899999987665554321 579999999999999999876
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.5e-08 Score=82.09 Aligned_cols=100 Identities=22% Similarity=0.305 Sum_probs=79.4
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcC--------C-CCCeEEEEccCCCCCCCCC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARG--------L-ADKVSFQVGDALQQPFPDG 225 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~--------~-~~~i~~~~~d~~~~~~~~~ 225 (379)
|+.+.||+|.|||.++..++... |..++|||.-++.++.+++++...- + ..++.++++|.....-+..
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a 161 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQA 161 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccC
Confidence 49999999999999999888766 3455999999999999999876542 1 1468889999888755678
Q ss_pred cccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 226 QFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 226 ~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+||.|++... .....+++...|+|||++++-.
T Consensus 162 ~YDaIhvGAa------a~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 162 PYDAIHVGAA------ASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred CcceEEEccC------ccccHHHHHHhhccCCeEEEee
Confidence 9999998732 2445667778899999998854
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.3e-08 Score=86.37 Aligned_cols=145 Identities=14% Similarity=0.088 Sum_probs=92.1
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC----------------C-----------CCe
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL----------------A-----------DKV 210 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----------------~-----------~~i 210 (379)
++.++||||||.-..-..-+...-.+++..|.++...+..++-++..+. . ..|
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 4789999999986553333333335899999999988866665433220 0 013
Q ss_pred -EEEEccCCCC-CCCC-----CcccEEEeccccCCC-CCH---HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchH
Q 016981 211 -SFQVGDALQQ-PFPD-----GQFDLVWSMESGEHM-PDK---SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPW 279 (379)
Q Consensus 211 -~~~~~d~~~~-~~~~-----~~fD~V~~~~~l~~~-~~~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 279 (379)
.++.+|+.+. |+.. .+||+|++..+++.. +|. ..+++++.++|||||.|++...........-
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG------ 209 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVG------ 209 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEET------
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEEC------
Confidence 3677888775 3432 359999999999876 344 6889999999999999999886443211000
Q ss_pred HHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEE
Q 016981 280 EQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
...+.. -..+.+.+++.|+++||++++.+
T Consensus 210 --------~~~F~~-l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 210 --------GHKFPC-LPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp --------TEEEE----B-HHHHHHHHHHTTEEEEEEE
T ss_pred --------CEeccc-ccCCHHHHHHHHHHcCCEEEecc
Confidence 000111 12478999999999999988876
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-06 Score=72.10 Aligned_cols=125 Identities=17% Similarity=0.268 Sum_probs=92.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
..-+||||||+|..+..|++.. +..+.++|++|.+++..++.+..++. ++..++.|+.+-- ..++.|+++.+--.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l-~~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGL-RNESVDVLVFNPPY 120 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhh-ccCCccEEEECCCc
Confidence 6789999999999999999877 46789999999999999988887765 5788888876532 23889988865332
Q ss_pred CCCC-----------------C----HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCC
Q 016981 237 EHMP-----------------D----KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPA 295 (379)
Q Consensus 237 ~~~~-----------------~----~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (379)
.--+ + .++++..+-.+|.|.|++++.....+
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N---------------------------- 172 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN---------------------------- 172 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc----------------------------
Confidence 2111 1 14566667778889999988763111
Q ss_pred CCCHHHHHHHHHhCCCceeEE
Q 016981 296 WCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 296 ~~~~~~~~~~l~~aGF~~v~~ 316 (379)
.++++-+.++.-||.....
T Consensus 173 --~p~ei~k~l~~~g~~~~~~ 191 (209)
T KOG3191|consen 173 --KPKEILKILEKKGYGVRIA 191 (209)
T ss_pred --CHHHHHHHHhhcccceeEE
Confidence 4677778889999876544
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.4e-08 Score=83.86 Aligned_cols=98 Identities=20% Similarity=0.221 Sum_probs=76.1
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
++.+|+|+-||.|.++..+++.. +..|+++|++|.+++..+++++.+++..++....+|..+... .+.||.|++...
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp- 178 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP- 178 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T-
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh-
Confidence 38999999999999999999844 678999999999999999999999998889999999988754 688999988642
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEE
Q 016981 237 EHMPDKSKFVSELARVTAPAGTII 260 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~ 260 (379)
.....+|..+.+++|+||.+-
T Consensus 179 ---~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 ---ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ---SSGGGGHHHHHHHEEEEEEEE
T ss_pred ---HHHHHHHHHHHHHhcCCcEEE
Confidence 223568889999999999863
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-07 Score=90.58 Aligned_cols=100 Identities=17% Similarity=0.129 Sum_probs=82.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||++||+|..+..++...+ .+|+++|+++.+++.++++++.+++ .++.+...|+..+....+.||+|++.- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~-~~~~v~~~Da~~~l~~~~~fD~V~lDP-~- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL-ENEKVFNKDANALLHEERKFDVVDIDP-F- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CceEEEhhhHHHHHhhcCCCCEEEECC-C-
Confidence 46899999999999999988764 4899999999999999999998887 467789999876421146799998752 2
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
..+..++..+.+.+++||.++++.
T Consensus 135 --Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 --GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred --CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 445788888888899999999983
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.9e-07 Score=82.71 Aligned_cols=102 Identities=18% Similarity=0.224 Sum_probs=66.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHH-HHHHHHHcCCCCCe-EEEEccCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQR-ANALAAARGLADKV-SFQVGDAL 218 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~-a~~~~~~~~~~~~i-~~~~~d~~ 218 (379)
.+..++...++. .++.+|||+|||||.++..+++....+|+|+|+++.|+.. .++. +++ .+...|+.
T Consensus 62 kL~~~l~~~~~~----~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~-------~~v~~~~~~ni~ 130 (228)
T TIGR00478 62 KLKEALEEFNID----VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD-------ERVKVLERTNIR 130 (228)
T ss_pred HHHHHHHhcCCC----CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC-------CCeeEeecCCcc
Confidence 455666655432 2478999999999999999999744589999999988876 2221 232 23334444
Q ss_pred CCC-----CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEE
Q 016981 219 QQP-----FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 219 ~~~-----~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~ 262 (379)
... ..-..+|+++++.. ..+..+.+.|+| |.+++.
T Consensus 131 ~~~~~~~~~d~~~~DvsfiS~~--------~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 131 YVTPADIFPDFATFDVSFISLI--------SILPELDLLLNP-NDLTLL 170 (228)
T ss_pred cCCHhHcCCCceeeeEEEeehH--------hHHHHHHHHhCc-CeEEEE
Confidence 321 11135676665432 358889999999 766654
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-07 Score=88.76 Aligned_cols=103 Identities=16% Similarity=0.197 Sum_probs=79.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC---CCCCeEEEEccCCCC-CCCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG---LADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~-~~~~~~fD~V~~~ 233 (379)
+.+||.||+|.|..++.+.+.. ..+|+.+|+++.+++.|++.+...+ -.++++++.+|.... ....++||+|++-
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D 183 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGD 183 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEec
Confidence 6799999999999999988854 4689999999999999999875321 136899999998764 3345789999976
Q ss_pred cccCCC----CC---HHHHHH-HHHHhcCCCCEEEEE
Q 016981 234 ESGEHM----PD---KSKFVS-ELARVTAPAGTIIIV 262 (379)
Q Consensus 234 ~~l~~~----~~---~~~~l~-~~~r~LkpgG~l~i~ 262 (379)
. .... +. ..++++ .+.+.|+|||.+++.
T Consensus 184 ~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 184 L-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred C-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 3 2211 10 256787 899999999998764
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.3e-07 Score=84.74 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 016981 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (379)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d 216 (379)
....+++.+.+.+... +.+|||++||+|.++..+++. ..+|+|+|+++.+++.|++++..+++ .++.|+.+|
T Consensus 191 ~~e~l~~~v~~~~~~~------~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~-~~v~~~~~d 262 (362)
T PRK05031 191 VNEKMLEWALDATKGS------KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGI-DNVQIIRMS 262 (362)
T ss_pred HHHHHHHHHHHHhhcC------CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEECC
Confidence 3445566666654311 357999999999999999887 46999999999999999999998887 489999999
Q ss_pred CCCC-C-CC--------------CCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 217 ALQQ-P-FP--------------DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 217 ~~~~-~-~~--------------~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.+. + +. ..+||+|+..=- . ..-...+++.+.+ |++.++++-
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPP-R-~G~~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 263 AEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPP-R-AGLDDETLKLVQA---YERILYISC 320 (362)
T ss_pred HHHHHHHHhhcccccccccccccCCCCCEEEECCC-C-CCCcHHHHHHHHc---cCCEEEEEe
Confidence 8763 1 10 125899986422 1 1112455555544 777777754
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.4e-07 Score=89.61 Aligned_cols=106 Identities=17% Similarity=0.215 Sum_probs=84.9
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-CCCCcccEEE---
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVW--- 231 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~V~--- 231 (379)
++.+|||+++|.|.-+..++... ...|+++|+++.-++..++++++.|+ .|+.+...|...++ ...+.||.|+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 48999999999999999999887 35899999999999999999999998 57888888887652 2246799999
Q ss_pred -ecc--ccCCCCCH----------------HHHHHHHHHhcCCCCEEEEEec
Q 016981 232 -SME--SGEHMPDK----------------SKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 232 -~~~--~l~~~~~~----------------~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|+. ++..-++. .++|..+.++|||||+|+.++-
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 332 22221211 5688899999999999988774
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.3e-07 Score=82.52 Aligned_cols=146 Identities=14% Similarity=0.155 Sum_probs=98.0
Q ss_pred HHHccCc-hhHHHhhhccccccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHH
Q 016981 101 EFYDESS-SLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKK 179 (379)
Q Consensus 101 ~~yd~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~ 179 (379)
-+||..+ ..|+++.. .+.||..... ..........+.+.++ ++..|+|+|||+|.-+..|.+.
T Consensus 34 ~~YD~~Gs~LFe~It~---lpEYYptr~E------~~iL~~~~~~Ia~~i~-------~~~~lIELGsG~~~Kt~~LL~a 97 (319)
T TIGR03439 34 LLYDDEGLKLFEEITY---SPEYYLTNDE------IEILKKHSSDIAASIP-------SGSMLVELGSGNLRKVGILLEA 97 (319)
T ss_pred hhhcchHHHHHHHHHc---CCccCChHHH------HHHHHHHHHHHHHhcC-------CCCEEEEECCCchHHHHHHHHH
Confidence 3566553 44666543 3567765432 2233344455555543 2678999999999987776665
Q ss_pred c-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE--EEccCCCC----CC--CCCcccEEEecc-ccCCCCCH--H
Q 016981 180 F-----GAKCQGITLSPVQAQRANALAAARGLADKVSF--QVGDALQQ----PF--PDGQFDLVWSME-SGEHMPDK--S 243 (379)
Q Consensus 180 ~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~--~~~d~~~~----~~--~~~~fD~V~~~~-~l~~~~~~--~ 243 (379)
+ ...++++|+|..+++.+.+++..... +.+.+ +++|+.+. +- ......+|+..+ ++.+++.. .
T Consensus 98 L~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~ 176 (319)
T TIGR03439 98 LERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAA 176 (319)
T ss_pred HHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHH
Confidence 4 35799999999999999999873333 34544 78887653 21 123456666554 88888654 5
Q ss_pred HHHHHHHH-hcCCCCEEEEEe
Q 016981 244 KFVSELAR-VTAPAGTIIIVT 263 (379)
Q Consensus 244 ~~l~~~~r-~LkpgG~l~i~~ 263 (379)
.+|+++++ .|+|||.|++..
T Consensus 177 ~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 177 AFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred HHHHHHHHhhCCCCCEEEEec
Confidence 88999999 999999988853
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.4e-07 Score=77.74 Aligned_cols=127 Identities=17% Similarity=0.184 Sum_probs=97.1
Q ss_pred EEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCC
Q 016981 161 NVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHM 239 (379)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~ 239 (379)
+++|||+|.|.-++.++-.. ..+++.+|....-+...+......++ +|+.++...+++ +....+||+|+++.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~-~~~~~~fd~v~aRAv---- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL-SNVEVINGRAEE-PEYRESFDVVTARAV---- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHH-TTTTT-EEEEEEESS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC-CCEEEEEeeecc-cccCCCccEEEeehh----
Confidence 89999999999999998877 67999999999999999999999998 489999999988 444688999999854
Q ss_pred CCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEec
Q 016981 240 PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319 (379)
Q Consensus 240 ~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 319 (379)
.....++.-+...|++||.+++.--. .... ..++.+..++..|.+...+..+
T Consensus 125 ~~l~~l~~~~~~~l~~~G~~l~~KG~----------------~~~~------------El~~~~~~~~~~~~~~~~v~~~ 176 (184)
T PF02527_consen 125 APLDKLLELARPLLKPGGRLLAYKGP----------------DAEE------------ELEEAKKAWKKLGLKVLSVPEF 176 (184)
T ss_dssp SSHHHHHHHHGGGEEEEEEEEEEESS------------------HH------------HHHTHHHHHHCCCEEEEEEEEE
T ss_pred cCHHHHHHHHHHhcCCCCEEEEEcCC----------------ChHH------------HHHHHHhHHHHhCCEEeeeccc
Confidence 45588899999999999998886410 0000 1334566677788887777665
Q ss_pred CC
Q 016981 320 SQ 321 (379)
Q Consensus 320 ~~ 321 (379)
..
T Consensus 177 ~~ 178 (184)
T PF02527_consen 177 EL 178 (184)
T ss_dssp E-
T ss_pred cC
Confidence 44
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.5e-07 Score=83.99 Aligned_cols=114 Identities=17% Similarity=0.170 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 016981 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (379)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d 216 (379)
....+++.+++.+... +.+|||++||+|.++..+++.. .+|+|+|+++.+++.|++++..+++ .++.|+.+|
T Consensus 182 ~~~~l~~~v~~~~~~~------~~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~-~~v~~~~~d 253 (353)
T TIGR02143 182 VNIKMLEWACEVTQGS------KGDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNI-DNVQIIRMS 253 (353)
T ss_pred HHHHHHHHHHHHhhcC------CCcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEEcC
Confidence 3445566666655321 3479999999999999999874 6999999999999999999999887 479999999
Q ss_pred CCCC-C-------C---C-----CCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 217 ALQQ-P-------F---P-----DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 217 ~~~~-~-------~---~-----~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.+. + + . ...||+|+..=- .-.-...+++.+. +|++.++++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~---~~~~ivYvsC 311 (353)
T TIGR02143 254 AEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQ---AYERILYISC 311 (353)
T ss_pred HHHHHHHHhhccccccccccccccCCCCEEEECCC--CCCCcHHHHHHHH---cCCcEEEEEc
Confidence 8763 1 0 0 113798886321 0111145555554 4778777764
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-07 Score=82.80 Aligned_cols=87 Identities=21% Similarity=0.265 Sum_probs=74.5
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
..++++++..++.+ ++.|||+|.|||.++..|.+. +++|+++++++.|+....++.+.......+++..+|+.+
T Consensus 45 ~v~~~I~~ka~~k~-----tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK 118 (315)
T KOG0820|consen 45 LVIDQIVEKADLKP-----TDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLK 118 (315)
T ss_pred HHHHHHHhccCCCC-----CCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccccc
Confidence 36677777777766 999999999999999999998 899999999999999999999766555789999999988
Q ss_pred CCCCCCcccEEEecc
Q 016981 220 QPFPDGQFDLVWSME 234 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~ 234 (379)
.++ ..||.++++.
T Consensus 119 ~d~--P~fd~cVsNl 131 (315)
T KOG0820|consen 119 TDL--PRFDGCVSNL 131 (315)
T ss_pred CCC--cccceeeccC
Confidence 764 3699998753
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.1e-07 Score=71.68 Aligned_cols=95 Identities=21% Similarity=0.274 Sum_probs=70.2
Q ss_pred CCEEEEeCCcccH-HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC-CCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGG-SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~-~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~V~~~~~l 236 (379)
+.+|||||||+|. ++..|++. |..|+++|+++..++.++++ .+.++.+|+.+..+. -+.+|+|++...
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~y~~a~liysirp- 86 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEIYKNAKLIYSIRP- 86 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHHHhcCCEEEEeCC-
Confidence 6899999999996 88888875 88999999999998888764 368899998876432 356899987532
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEeccCC
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 267 (379)
-++....+.++++. -|.-+++.....+
T Consensus 87 --p~el~~~~~~la~~--~~~~~~i~~l~~e 113 (134)
T PRK04148 87 --PRDLQPFILELAKK--INVPLIIKPLSGE 113 (134)
T ss_pred --CHHHHHHHHHHHHH--cCCCEEEEcCCCC
Confidence 23445666666663 3566777665443
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.1e-07 Score=88.33 Aligned_cols=104 Identities=28% Similarity=0.296 Sum_probs=84.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEccCCCC-C---CCCCcccEEEe
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQ-P---FPDGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~-~---~~~~~fD~V~~ 232 (379)
+++|||+=|=||.++.+.+.. |+ +|++||+|...++.|+++++-+|+. .++.|+++|+.+. . -...+||+|++
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 899999999999999999986 55 9999999999999999999999985 4689999998764 1 22458999996
Q ss_pred cc-cc--------CCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 233 ME-SG--------EHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 233 ~~-~l--------~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
-= .+ .-..+...++..+.++|+|||.++++.
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 31 11 111234678889999999999999987
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-07 Score=75.57 Aligned_cols=78 Identities=19% Similarity=0.214 Sum_probs=65.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+++++|+|||.|-++....-.....|+|+|++|++++.+++++....+ ++++.++|+.++-+..+.||.++.+--+..
T Consensus 49 gkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGIFDTAVINPPFGT 126 (185)
T ss_pred CcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCCeEeeEEecCCCCc
Confidence 899999999999998554432256899999999999999999988776 679999999998777789999998876653
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-07 Score=84.58 Aligned_cols=110 Identities=25% Similarity=0.333 Sum_probs=86.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCe-EEEEccCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKV-SFQVGDALQ 219 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i-~~~~~d~~~ 219 (379)
+..+++...+ .+..++|+|||.|.... ......++|.|++...+..+++. +. ....+|+..
T Consensus 35 ~v~qfl~~~~-------~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~--------~~~~~~~ad~l~ 96 (293)
T KOG1331|consen 35 MVRQFLDSQP-------TGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS--------GGDNVCRADALK 96 (293)
T ss_pred HHHHHHhccC-------CcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC--------CCceeehhhhhc
Confidence 4455555443 37899999999986432 11245799999999988887752 33 678899999
Q ss_pred CCCCCCcccEEEeccccCCCCCH---HHHHHHHHHhcCCCCEEEEEeccCCC
Q 016981 220 QPFPDGQFDLVWSMESGEHMPDK---SKFVSELARVTAPAGTIIIVTWCHRD 268 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~---~~~l~~~~r~LkpgG~l~i~~~~~~~ 268 (379)
+|+.+.+||.+++..++||+... ..+++++.|+|+|||..++..|....
T Consensus 97 ~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q 148 (293)
T KOG1331|consen 97 LPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALEQ 148 (293)
T ss_pred CCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhhc
Confidence 99999999999999999999643 78999999999999999998876544
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.9e-07 Score=84.09 Aligned_cols=105 Identities=23% Similarity=0.250 Sum_probs=78.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEccCCCC-C--CCCCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQ-P--FPDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~-~--~~~~~fD~V~~~~ 234 (379)
+++|||+=|=||.++...+.....+|+.||.|..+++.+++++..++++ .+++|+..|+.+. . -..++||+|++-=
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDP 203 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDP 203 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECC
Confidence 7899999999999999888753348999999999999999999999875 5799999998763 1 1246899999631
Q ss_pred c-c--CC---CCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 235 S-G--EH---MPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 235 ~-l--~~---~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
- + .. ..+...++..+.++|+|||.|+++.
T Consensus 204 PsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 204 PSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 1 1 01 1234678889999999999988766
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.1e-06 Score=74.35 Aligned_cols=113 Identities=19% Similarity=0.298 Sum_probs=92.4
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 016981 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (379)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d 216 (379)
..++.-+++..+ ++++||||.=||..+..+|... +++|+++|+++...+.+.+..+..|+..++++++++
T Consensus 62 g~fl~~li~~~~--------ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~ 133 (237)
T KOG1663|consen 62 GQFLQMLIRLLN--------AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGP 133 (237)
T ss_pred HHHHHHHHHHhC--------CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecc
Confidence 345566666654 8899999999999888888877 689999999999999999999999999999999998
Q ss_pred CCCC------CCCCCcccEEEeccccCCCC-CHHHHHHHHHHhcCCCCEEEEEe
Q 016981 217 ALQQ------PFPDGQFDLVWSMESGEHMP-DKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 217 ~~~~------~~~~~~fD~V~~~~~l~~~~-~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.+. ....++||+++.- |.. +....+.++.+++|+||.|++-.
T Consensus 134 a~esLd~l~~~~~~~tfDfaFvD----adK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 134 ALESLDELLADGESGTFDFAFVD----ADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred hhhhHHHHHhcCCCCceeEEEEc----cchHHHHHHHHHHHhhcccccEEEEec
Confidence 7652 1346889999853 332 23578899999999999998865
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-06 Score=85.23 Aligned_cols=119 Identities=25% Similarity=0.354 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 016981 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (379)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~ 214 (379)
......++...+++++... +.+|||+=||.|.++..++++ ..+|+|+|+++.+++.|+++++.+++. |+.|..
T Consensus 275 ~~~~ekl~~~a~~~~~~~~-----~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~ 347 (432)
T COG2265 275 PAVAEKLYETALEWLELAG-----GERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGID-NVEFIA 347 (432)
T ss_pred HHHHHHHHHHHHHHHhhcC-----CCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEe
Confidence 4456677888888877654 789999999999999999987 679999999999999999999999984 699999
Q ss_pred ccCCCCCC---CCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 215 GDALQQPF---PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 215 ~d~~~~~~---~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+++++... ....+|.|+..=-=.- -...+++.+.+ ++|-..++++-
T Consensus 348 ~~ae~~~~~~~~~~~~d~VvvDPPR~G--~~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 348 GDAEEFTPAWWEGYKPDVVVVDPPRAG--ADREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred CCHHHHhhhccccCCCCEEEECCCCCC--CCHHHHHHHHh-cCCCcEEEEeC
Confidence 99988642 2357899985310000 01356666665 67888888865
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.8e-06 Score=79.13 Aligned_cols=119 Identities=22% Similarity=0.213 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 016981 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (379)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~ 215 (379)
..+.+.++-..++.- .+.+|||+|||.|..+-.+.+.+ -.+++++|.|+.|++.++..+..............
T Consensus 18 ~~~vl~El~~r~p~f-----~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~ 92 (274)
T PF09243_consen 18 VYRVLSELRKRLPDF-----RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRV 92 (274)
T ss_pred HHHHHHHHHHhCcCC-----CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhh
Confidence 344555555443322 37899999999998766655544 35799999999999999987765421111111111
Q ss_pred cCCC-CCCCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEEecc
Q 016981 216 DALQ-QPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 216 d~~~-~~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
...+ .++ ...|+|++.++|..+++. ..+++.+.+.+.+ .|+|++..
T Consensus 93 ~~~~~~~~--~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpG 141 (274)
T PF09243_consen 93 LYRDFLPF--PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPG 141 (274)
T ss_pred hhcccccC--CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCC
Confidence 1111 122 234999999999998762 4566667666655 88888854
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.2e-07 Score=78.80 Aligned_cols=105 Identities=18% Similarity=0.124 Sum_probs=78.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C---CCCCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P---FPDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~---~~~~~fD~V~~~~ 234 (379)
+.+|||+-||||.++...+.+...+|+.||.++..+...+++++..+...++.++..|+... . ....+||+|++-=
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP 122 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP 122 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--
T ss_pred CCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC
Confidence 89999999999999999998865799999999999999999999988876789999886542 1 2468899998752
Q ss_pred ccCCCCC-HHHHHHHHH--HhcCCCCEEEEEec
Q 016981 235 SGEHMPD-KSKFVSELA--RVTAPAGTIIIVTW 264 (379)
Q Consensus 235 ~l~~~~~-~~~~l~~~~--r~LkpgG~l~i~~~ 264 (379)
-+.... ...++..+. .+|+++|.+++-..
T Consensus 123 -PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 123 -PYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp -STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred -CcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 222233 367788777 78999998887653
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.50 E-value=9.2e-07 Score=79.14 Aligned_cols=90 Identities=24% Similarity=0.303 Sum_probs=74.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
.++++++.+...+ +..|||||+|.|.++..|+++ +.+|+++++++.+++..++++. ...|++++.+|+.+.
T Consensus 18 v~~kIv~~a~~~~-----~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~ 88 (259)
T COG0030 18 VIDKIVEAANISP-----GDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKF 88 (259)
T ss_pred HHHHHHHhcCCCC-----CCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcC
Confidence 5778888777665 899999999999999999998 6799999999999999998875 236899999999998
Q ss_pred CCCCC-cccEEEeccccCCCC
Q 016981 221 PFPDG-QFDLVWSMESGEHMP 240 (379)
Q Consensus 221 ~~~~~-~fD~V~~~~~l~~~~ 240 (379)
+++.- .++.|+++-- +++.
T Consensus 89 d~~~l~~~~~vVaNlP-Y~Is 108 (259)
T COG0030 89 DFPSLAQPYKVVANLP-YNIS 108 (259)
T ss_pred cchhhcCCCEEEEcCC-Cccc
Confidence 87543 6788887643 4443
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.1e-07 Score=83.50 Aligned_cols=88 Identities=17% Similarity=0.220 Sum_probs=72.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
+++++++.+...+ +..+||.+||.|..+..+++.++ ++|+|+|.++.+++.|++++.. .+++.++++|+.
T Consensus 7 ll~Evl~~L~~~p-----g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~ 78 (296)
T PRK00050 7 LLDEVVDALAIKP-----DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFS 78 (296)
T ss_pred cHHHHHHhhCCCC-----CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHH
Confidence 6778888877554 78999999999999999999873 7999999999999999998755 358999999988
Q ss_pred CCC--CCCC--cccEEEecccc
Q 016981 219 QQP--FPDG--QFDLVWSMESG 236 (379)
Q Consensus 219 ~~~--~~~~--~fD~V~~~~~l 236 (379)
++. .+.+ ++|.|++....
T Consensus 79 ~l~~~l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 79 NLKEVLAEGLGKVDGILLDLGV 100 (296)
T ss_pred HHHHHHHcCCCccCEEEECCCc
Confidence 753 2222 79999987554
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.6e-06 Score=70.62 Aligned_cols=104 Identities=37% Similarity=0.491 Sum_probs=76.0
Q ss_pred EEEeCCcccHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC--CCCCC-CcccEEEecccc
Q 016981 162 VVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QPFPD-GQFDLVWSMESG 236 (379)
Q Consensus 162 vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~-~~fD~V~~~~~l 236 (379)
++|+|||+|... .+..... ..++|+|+++.++..++..... .....+.+...|... .++.. ..||++ .....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeee
Confidence 999999999977 4444322 4899999999999985554432 211116788888776 67766 489999 55544
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEeccCCC
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 268 (379)
.+..+....+.++.+.|+|+|.+++.......
T Consensus 129 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 129 LHLLPPAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hhcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 44434889999999999999999998865443
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-06 Score=77.59 Aligned_cols=147 Identities=17% Similarity=0.202 Sum_probs=85.9
Q ss_pred CCEEEEeCCcc--cHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----------CC
Q 016981 159 PKNVVDVGCGI--GGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----------FP 223 (379)
Q Consensus 159 ~~~vLDiGcGt--G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~ 223 (379)
-...||||||- -.....+++.. .++|+-+|.+|..+..++..+....- ....++.+|+.+.. +.
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 46799999994 33566677665 68999999999999999998865421 13889999997631 11
Q ss_pred CCcccEEEeccccCCCCC---HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016981 224 DGQFDLVWSMESGEHMPD---KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (379)
Q Consensus 224 ~~~fD~V~~~~~l~~~~~---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (379)
-...=.|++..+++|++| +..+++.+...|.||.+|+|+..+.+.. +. ........+...... ..+.+.+
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~-p~---~~~~~~~~~~~~~~~---~~~Rs~~ 220 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGA-PE---RAEALEAVYAQAGSP---GRPRSRE 220 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTS-HH---HHHHHHHHHHHCCS-------B-HH
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCC-HH---HHHHHHHHHHcCCCC---ceecCHH
Confidence 122335777889999964 6899999999999999999998765421 10 011112222222111 1355899
Q ss_pred HHHHHHHhCCCceeE
Q 016981 301 DYVKLLQSLSLEDIK 315 (379)
Q Consensus 301 ~~~~~l~~aGF~~v~ 315 (379)
++..+|. ||+.++
T Consensus 221 ei~~~f~--g~elve 233 (267)
T PF04672_consen 221 EIAAFFD--GLELVE 233 (267)
T ss_dssp HHHHCCT--TSEE-T
T ss_pred HHHHHcC--CCccCC
Confidence 9999885 888653
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.4e-06 Score=81.15 Aligned_cols=106 Identities=20% Similarity=0.172 Sum_probs=91.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
|.+|||.=+|.|.+++.+|+....+|+++|++|.+++..+++++.+++...+..+++|....+..-+.+|.|++...
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p--- 265 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP--- 265 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC---
Confidence 89999999999999999999754459999999999999999999999977799999999988654488999997643
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEeccCCC
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRD 268 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 268 (379)
.+...++..+.+.+++||.+-+.++...+
T Consensus 266 -~~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 266 -KSAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred -CcchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 44577899999999999999998876543
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2e-06 Score=78.47 Aligned_cols=103 Identities=17% Similarity=0.266 Sum_probs=82.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEccCCCC-CCCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--L-ADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~-~~~~~~fD~V~~~ 233 (379)
+++||-||.|.|.+++.+.+.. -.+++.+|+++..++.+++.+.... . .++++++..|..+. .-...+||+|++-
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 3699999999999999999976 4799999999999999999886532 2 37899999998764 2123489999975
Q ss_pred cccCCC---C--CHHHHHHHHHHhcCCCCEEEEE
Q 016981 234 ESGEHM---P--DKSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 234 ~~l~~~---~--~~~~~l~~~~r~LkpgG~l~i~ 262 (379)
..=. . + ....+++.+++.|+++|.++..
T Consensus 157 ~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 157 STDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 4433 2 1 1278999999999999999887
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.1e-07 Score=80.89 Aligned_cols=105 Identities=20% Similarity=0.288 Sum_probs=79.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC---CCCeEEEEccCCCC-CCCCC-cccEEEe
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGL---ADKVSFQVGDALQQ-PFPDG-QFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~---~~~i~~~~~d~~~~-~~~~~-~fD~V~~ 232 (379)
+.+||=||.|.|..+..+.+.. ..+++.+|+++..++.|++.+..... .++++++.+|.... .-..+ +||+|+.
T Consensus 77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~ 156 (246)
T PF01564_consen 77 PKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIV 156 (246)
T ss_dssp T-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEE
T ss_pred cCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEE
Confidence 8899999999999999998765 46999999999999999998765321 36899999998653 11233 8999997
Q ss_pred ccccCCCCC----HHHHHHHHHHhcCCCCEEEEEe
Q 016981 233 MESGEHMPD----KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 233 ~~~l~~~~~----~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
-..-...+. ...+++.+.+.|+|||.+++..
T Consensus 157 D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 157 DLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp ESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 443321111 2689999999999999998865
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-07 Score=79.69 Aligned_cols=95 Identities=21% Similarity=0.310 Sum_probs=73.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
.+.++||+|.|.|..+..++..+ .+|+++++|..|....+++ +.++. ...+..-.+-+||+|.|.+++.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f-eevyATElS~tMr~rL~kk--------~ynVl--~~~ew~~t~~k~dli~clNlLD 180 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKKK--------NYNVL--TEIEWLQTDVKLDLILCLNLLD 180 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH-HHHHHHHhhHHHHHHHhhc--------CCcee--eehhhhhcCceeehHHHHHHHH
Confidence 36899999999999999998875 4799999999998876653 22221 1112111245699999999998
Q ss_pred CCCCHHHHHHHHHHhcCC-CCEEEEEe
Q 016981 238 HMPDKSKFVSELARVTAP-AGTIIIVT 263 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~Lkp-gG~l~i~~ 263 (379)
--.++-.+|+.++.+|+| +|+++++-
T Consensus 181 Rc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 181 RCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred hhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 878999999999999999 89888764
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.4e-06 Score=72.89 Aligned_cols=123 Identities=20% Similarity=0.272 Sum_probs=88.0
Q ss_pred EEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-CCCCCCcccEEEeccccCCC
Q 016981 162 VVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPFPDGQFDLVWSMESGEHM 239 (379)
Q Consensus 162 vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~V~~~~~l~~~ 239 (379)
|.||||--|.+...|.++. ..+++++|+++.-++.|+++++..++.+++++..+|... ++ +.+..|.|+..++=...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC-CCCCCCEEEEecCCHHH
Confidence 6899999999999999985 347999999999999999999999998999999999654 33 22337888877654322
Q ss_pred CCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEec
Q 016981 240 PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319 (379)
Q Consensus 240 ~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 319 (379)
...+|.+....++....|++.-. .....++++|.+.||..++..-.
T Consensus 80 --I~~ILe~~~~~~~~~~~lILqP~--------------------------------~~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 80 --IIEILEAGPEKLSSAKRLILQPN--------------------------------THAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp --HHHHHHHTGGGGTT--EEEEEES--------------------------------S-HHHHHHHHHHTTEEEEEEEEE
T ss_pred --HHHHHHhhHHHhccCCeEEEeCC--------------------------------CChHHHHHHHHHCCCEEEEeEEE
Confidence 25667766667766667777541 14678999999999998886543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.5e-06 Score=75.32 Aligned_cols=96 Identities=14% Similarity=0.052 Sum_probs=75.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc---CCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR---GLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
+++||=+|.|-|..++.+.+. ..+|+-+|+++.+++.+++.+... --.++++++.. +.+ ...++||+|++-..
T Consensus 73 pk~VLIiGGGDGg~~REvLkh-~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvDs~ 148 (262)
T PRK00536 73 LKEVLIVDGFDLELAHQLFKY-DTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICLQE 148 (262)
T ss_pred CCeEEEEcCCchHHHHHHHCc-CCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEcCC
Confidence 789999999999999999986 569999999999999999965432 11357777652 211 12368999997643
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
....+++.+++.|+|||.++...
T Consensus 149 -----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 149 -----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred -----CChHHHHHHHHhcCCCcEEEECC
Confidence 33788899999999999998864
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.8e-06 Score=71.68 Aligned_cols=132 Identities=17% Similarity=0.090 Sum_probs=101.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCc-ccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQ-FDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-fD~V~~~~~l 236 (379)
+.+++|||+|.|.-++.++-.+ ..+|+-+|....-+.+.+....+.++ +|++++++.+++..-. .. ||+|+++.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~~-~~~~D~vtsRAv- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQE-KKQYDVVTSRAV- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhcccc-cccCcEEEeehc-
Confidence 5899999999999999988555 66799999999999999999988888 5899999999987521 22 999998754
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
.+...++.-+...+|+||.+++.-+. .... -..+.++.....||.++.+
T Consensus 145 ---a~L~~l~e~~~pllk~~g~~~~~k~~----------------~~~~------------e~~e~~~a~~~~~~~~~~~ 193 (215)
T COG0357 145 ---ASLNVLLELCLPLLKVGGGFLAYKGL----------------AGKD------------ELPEAEKAILPLGGQVEKV 193 (215)
T ss_pred ---cchHHHHHHHHHhcccCCcchhhhHH----------------hhhh------------hHHHHHHHHHhhcCcEEEE
Confidence 34467788888999999987653211 0000 1345667788889999888
Q ss_pred EecCCCcc
Q 016981 317 EDWSQNVA 324 (379)
Q Consensus 317 ~~~~~~~~ 324 (379)
..+..+..
T Consensus 194 ~~~~~p~~ 201 (215)
T COG0357 194 FSLTVPEL 201 (215)
T ss_pred EEeecCCC
Confidence 87776654
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.1e-06 Score=79.17 Aligned_cols=100 Identities=12% Similarity=0.142 Sum_probs=82.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-CCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~V~~~~~ 235 (379)
+.+|||+.||+|..++.++.+. ..+|+++|+++.+++.++++++.+++ .++.+...|+...- .....||+|...-
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-~~~~v~~~Da~~~l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-ENIEVPNEDAANVLRYRNRKFHVIDIDP- 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEchhHHHHHHHhCCCCCEEEeCC-
Confidence 4689999999999999999874 35899999999999999999998876 36889999987652 2235799998643
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+ ..+..++..+.+.+++||.|.++-
T Consensus 123 f---Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 F---GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C---CCcHHHHHHHHHhcccCCEEEEEe
Confidence 2 345689999999999999999983
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.9e-07 Score=74.13 Aligned_cols=72 Identities=28% Similarity=0.503 Sum_probs=55.8
Q ss_pred EEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--CCCCc-ccEEEec
Q 016981 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQ-FDLVWSM 233 (379)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~-fD~V~~~ 233 (379)
.|+|+.||.|..++.+|+. ..+|+++|+++..++.|+.+++..|+.+++.|+++|+.+.. +.... ||+|++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999998 56999999999999999999999999889999999987752 22222 7999864
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.1e-06 Score=74.35 Aligned_cols=168 Identities=19% Similarity=0.301 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHHHHccCchhHHHhhhccccccccCCCCCCC--cchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCC
Q 016981 90 AAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVS--VSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGC 167 (379)
Q Consensus 90 ~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGc 167 (379)
....++...+.+.+.......+..|.+.+... +.+ +.. .-++.....++...-+..+.... ...+.+|+=|||
T Consensus 55 ~~i~~~~~~L~~~~~~ae~~LE~~~A~~l~~~--~~p-~~~L~~FpYy~nY~~L~~lE~~~l~~~~--~~~p~rVaFIGS 129 (276)
T PF03059_consen 55 PEIQSIRPSLRRLCSEAEGLLESHWAKRLLAS--DNP-LDHLESFPYYPNYEKLVRLEYAALRIHA--GDPPSRVAFIGS 129 (276)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SSH-HHHHHTSTTHHHHHHHHHHHHH-HTT----TT---EEEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCH-HHHHhcCCcHHHHHHHHHHHHHHHhhcC--CcccceEEEEcC
Confidence 55566666666666655544444444321110 000 000 00022223334443333333322 113569999999
Q ss_pred ccc-HHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHH-HcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC-CCCH
Q 016981 168 GIG-GSSRYLAKKF--GAKCQGITLSPVQAQRANALAA-ARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH-MPDK 242 (379)
Q Consensus 168 GtG-~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~-~~~~ 242 (379)
|.= ..++.+++++ +..|+++|+++.+.+.+++..+ ..++..++.|..+|..+.+..-..||+|+....... -.+.
T Consensus 130 GPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K 209 (276)
T PF03059_consen 130 GPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPK 209 (276)
T ss_dssp -SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT-S----SH
T ss_pred CCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhhcccccchH
Confidence 964 4466666654 5689999999999999999887 456667899999999877654468999987665542 2477
Q ss_pred HHHHHHHHHhcCCCCEEEEE
Q 016981 243 SKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 243 ~~~l~~~~r~LkpgG~l~i~ 262 (379)
.+++.++.+.++||+.+++-
T Consensus 210 ~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 210 EEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp HHHHHHHHHHS-TTSEEEEE
T ss_pred HHHHHHHHhhCCCCcEEEEe
Confidence 99999999999999988875
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2e-06 Score=75.06 Aligned_cols=116 Identities=25% Similarity=0.320 Sum_probs=71.9
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHH-------HcCC-CCCe
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAA-------ARGL-ADKV 210 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~-------~~~~-~~~i 210 (379)
..+..+++.+++.+ +...+|||||.|......+-..++ +++||++.+...+.|+...+ ..|. ..++
T Consensus 29 ~~~~~il~~~~l~~-----~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v 103 (205)
T PF08123_consen 29 EFVSKILDELNLTP-----DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKV 103 (205)
T ss_dssp HHHHHHHHHTT--T-----T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EE
T ss_pred HHHHHHHHHhCCCC-----CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 45666777777665 899999999999998888776655 59999999998887765432 2232 2467
Q ss_pred EEEEccCCCCCCCC---CcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEE
Q 016981 211 SFQVGDALQQPFPD---GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261 (379)
Q Consensus 211 ~~~~~d~~~~~~~~---~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i 261 (379)
.+..+|+.+.++.. ...|+|++++.... ++....|.+....||+|.+++-
T Consensus 104 ~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~-~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 104 ELIHGDFLDPDFVKDIWSDADVVFVNNTCFD-PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp EEECS-TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred eeeccCccccHhHhhhhcCCCEEEEeccccC-HHHHHHHHHHHhcCCCCCEEEE
Confidence 88888887643211 34699999876432 3446667888888999988764
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.6e-06 Score=84.80 Aligned_cols=119 Identities=22% Similarity=0.207 Sum_probs=85.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc----------------------------------------
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF---------------------------------------- 180 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~---------------------------------------- 180 (379)
+...++...+... ++..++|..||+|.+.+..+...
T Consensus 177 lAaa~l~~a~w~~----~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~ 252 (702)
T PRK11783 177 LAAAILLRSGWPQ----EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL 252 (702)
T ss_pred HHHHHHHHcCCCC----CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 4445555555421 37899999999999988876521
Q ss_pred ---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC--CCcccEEEeccccCC-CC---CHHHHHHHHHH
Q 016981 181 ---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP--DGQFDLVWSMESGEH-MP---DKSKFVSELAR 251 (379)
Q Consensus 181 ---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fD~V~~~~~l~~-~~---~~~~~l~~~~r 251 (379)
..+++|+|+++.+++.|++++...|+.+.+.|.++|+.+++.+ .++||+|+++=-... +. +...+.+++.+
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~ 332 (702)
T PRK11783 253 AELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGR 332 (702)
T ss_pred cccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHH
Confidence 1269999999999999999999999987899999999887543 357999999854422 22 22344444444
Q ss_pred hc---CCCCEEEEEe
Q 016981 252 VT---APAGTIIIVT 263 (379)
Q Consensus 252 ~L---kpgG~l~i~~ 263 (379)
.| .+|+.+++..
T Consensus 333 ~lk~~~~g~~~~llt 347 (702)
T PRK11783 333 RLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHhCCCCeEEEEe
Confidence 44 4898887765
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.2e-06 Score=69.56 Aligned_cols=106 Identities=18% Similarity=0.105 Sum_probs=81.9
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CCCCC--cccEEEecc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDG--QFDLVWSME 234 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~--~fD~V~~~~ 234 (379)
.+.++||+=+|+|.++...+.+....++.||.+.......+++++..+...+..++..|+... +-... +||+|+.-=
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 389999999999999999999976799999999999999999999988777899999998743 11222 499999754
Q ss_pred ccC-CCCCHHHHHHH--HHHhcCCCCEEEEEe
Q 016981 235 SGE-HMPDKSKFVSE--LARVTAPAGTIIIVT 263 (379)
Q Consensus 235 ~l~-~~~~~~~~l~~--~~r~LkpgG~l~i~~ 263 (379)
-+. -+-+....+.. -..+|+|+|.+++-.
T Consensus 123 Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 123 PYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 443 11122333333 457799999998865
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.9e-06 Score=79.82 Aligned_cols=78 Identities=31% Similarity=0.453 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 016981 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (379)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~ 214 (379)
......+++..++.++... + +|||+-||+|.++..+++. ..+|+|||+++.+++.|++++..+++ .|++|..
T Consensus 179 ~~~~~~l~~~~~~~l~~~~-----~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~ 250 (352)
T PF05958_consen 179 PEQNEKLYEQALEWLDLSK-----G-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIR 250 (352)
T ss_dssp HHHHHHHHHHHHHHCTT-T-----T-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE
T ss_pred HHHHHHHHHHHHHHhhcCC-----C-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEE
Confidence 3456678888888887543 4 8999999999999999997 57999999999999999999999998 6899998
Q ss_pred ccCCCC
Q 016981 215 GDALQQ 220 (379)
Q Consensus 215 ~d~~~~ 220 (379)
+++++.
T Consensus 251 ~~~~~~ 256 (352)
T PF05958_consen 251 GDAEDF 256 (352)
T ss_dssp --SHHC
T ss_pred eeccch
Confidence 877553
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.2e-06 Score=70.52 Aligned_cols=103 Identities=23% Similarity=0.290 Sum_probs=81.1
Q ss_pred CCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecc
Q 016981 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (379)
Q Consensus 155 ~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~ 234 (379)
..-.+++|||+|+|+|..++..++.....|+..|+.|......+-+.+.+|+ ++.+...|... .+..||+|++..
T Consensus 76 etVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g---~~~~~Dl~LagD 150 (218)
T COG3897 76 ETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG---SPPAFDLLLAGD 150 (218)
T ss_pred cccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC---CCcceeEEEeec
Confidence 3456999999999999999999887666899999999999999999888886 67888777655 357799999999
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCE-EEEEe
Q 016981 235 SGEHMPDKSKFVSELARVTAPAGT-IIIVT 263 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~-l~i~~ 263 (379)
+++.-+.-.+++. +.+.|+..|. +++.+
T Consensus 151 lfy~~~~a~~l~~-~~~~l~~~g~~vlvgd 179 (218)
T COG3897 151 LFYNHTEADRLIP-WKDRLAEAGAAVLVGD 179 (218)
T ss_pred eecCchHHHHHHH-HHHHHHhCCCEEEEeC
Confidence 9877555567777 5555665555 44444
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.23 E-value=9.8e-06 Score=69.78 Aligned_cols=111 Identities=23% Similarity=0.249 Sum_probs=77.6
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 016981 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (379)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d 216 (379)
...+.++.+...+- .++.+|+|+|+-.|.|+..+++..+ ..|+|+|+.|-- ..+++.++++|
T Consensus 30 a~KL~el~~k~~i~----~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d 93 (205)
T COG0293 30 AYKLLELNEKFKLF----KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGD 93 (205)
T ss_pred HHHHHHHHHhcCee----cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeee
Confidence 34455555554433 2589999999999999999999874 359999998732 22579999999
Q ss_pred CCCCC--------CCCCcccEEEecccc---CCC-CCH-------HHHHHHHHHhcCCCCEEEEEecc
Q 016981 217 ALQQP--------FPDGQFDLVWSMESG---EHM-PDK-------SKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 217 ~~~~~--------~~~~~fD~V~~~~~l---~~~-~~~-------~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
++..+ +....+|+|++-..- .+. .|- ..++.-+..+|+|||.+++-.+-
T Consensus 94 ~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 94 ITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred ccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 98743 334557999854322 111 121 34566677899999999998754
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.2e-07 Score=72.93 Aligned_cols=136 Identities=9% Similarity=0.117 Sum_probs=92.3
Q ss_pred CCEEEEeCCcc-cHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCC--CCeEEEEccCCCC--CCCCCcccEEEe
Q 016981 159 PKNVVDVGCGI-GGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLA--DKVSFQVGDALQQ--PFPDGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGt-G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~~--~~~~~~fD~V~~ 232 (379)
+.+|||+|.|- |.-+..+|... ...|..+|-+...++..++....+... ..+.....+.... ......||.|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 78999999995 44445555544 568999999999998887765433111 1121222222111 122458999999
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCc
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLE 312 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~ 312 (379)
...+..-.....+++.|.++|+|.|..++..+-. -.+.+.+.+.....||.
T Consensus 110 ADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRR-----------------------------g~sL~kF~de~~~~gf~ 160 (201)
T KOG3201|consen 110 ADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRR-----------------------------GQSLQKFLDEVGTVGFT 160 (201)
T ss_pred ccchhHHHHHHHHHHHHHHHhCcccceeEecCcc-----------------------------cchHHHHHHHHHhceeE
Confidence 9888665555788999999999999976654211 12567778888899999
Q ss_pred eeEEEecCCCc
Q 016981 313 DIKAEDWSQNV 323 (379)
Q Consensus 313 ~v~~~~~~~~~ 323 (379)
+.-.++|...+
T Consensus 161 v~l~enyde~i 171 (201)
T KOG3201|consen 161 VCLEENYDEAI 171 (201)
T ss_pred EEecccHhHHH
Confidence 98887776655
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.2e-05 Score=75.32 Aligned_cols=105 Identities=19% Similarity=0.294 Sum_probs=72.7
Q ss_pred CCEEEEeCCcccHHHHHHHHH--------cCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEccCCCCCCC--CCcc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKK--------FGAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQQPFP--DGQF 227 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~--------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~--~~~f 227 (379)
+.+|+|.+||+|.+...+.+. ....++|+|+++.++..|+-++.-.+... +..+...|....+.. ...|
T Consensus 47 ~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 126 (311)
T PF02384_consen 47 GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQKF 126 (311)
T ss_dssp TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--E
T ss_pred cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence 778999999999998888763 25689999999999999988776555432 245778887655322 4789
Q ss_pred cEEEeccccCCC--C------------------C-HHHHHHHHHHhcCCCCEEEEEe
Q 016981 228 DLVWSMESGEHM--P------------------D-KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 228 D~V~~~~~l~~~--~------------------~-~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|+|+++--+... . . ...++..+.+.|++||++++..
T Consensus 127 D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 127 DVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp EEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 999986444322 0 0 1357889999999999987766
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00023 Score=67.67 Aligned_cols=103 Identities=17% Similarity=0.248 Sum_probs=62.8
Q ss_pred CCCCCCCCcccEEEeccccCCCCC--------------------------------------HHHHHHHHHHhcCCCCEE
Q 016981 218 LQQPFPDGQFDLVWSMESGEHMPD--------------------------------------KSKFVSELARVTAPAGTI 259 (379)
Q Consensus 218 ~~~~~~~~~fD~V~~~~~l~~~~~--------------------------------------~~~~l~~~~r~LkpgG~l 259 (379)
..--||.++.+++++...+|++.. ...+|+.=++-|.|||++
T Consensus 154 Y~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~m 233 (386)
T PLN02668 154 YRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAM 233 (386)
T ss_pred cccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEE
Confidence 333478999999999999998852 112333344569999999
Q ss_pred EEEeccCCCCCCCccc-cc-hH---HHHHHHH----------HhhccCCC-CCCCHHHHHHHHHhCC-CceeEEEecC
Q 016981 260 IIVTWCHRDLAPSEES-LQ-PW---EQELLKK----------ICDAYYLP-AWCSTADYVKLLQSLS-LEDIKAEDWS 320 (379)
Q Consensus 260 ~i~~~~~~~~~~~~~~-~~-~~---~~~~~~~----------~~~~~~~~-~~~~~~~~~~~l~~aG-F~~v~~~~~~ 320 (379)
+++....+...+.... .. .| ....+.. -...+.+| +..+.+|+++.+++.| |++..++.+.
T Consensus 234 vl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~ 311 (386)
T PLN02668 234 FLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFK 311 (386)
T ss_pred EEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEee
Confidence 9988766543222221 11 11 1111111 12334444 3469999999999988 7666665544
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00013 Score=65.92 Aligned_cols=175 Identities=16% Similarity=0.159 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH---HcC------
Q 016981 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAA---ARG------ 205 (379)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~------ 205 (379)
......+++++-...+... ......+||--|||.|+++..|+.. |..+-|-+.|--|+-...-.+. ..+
T Consensus 128 d~~ykpii~~l~~lfp~~~-~~r~ki~iLvPGaGlGRLa~dla~~-G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYP 205 (369)
T KOG2798|consen 128 DQLYKPIIEELNSLFPSRG-KERTKIRILVPGAGLGRLAYDLACL-GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYP 205 (369)
T ss_pred hhhhhhHHHHHHhhCCCcc-ccccCceEEecCCCchhHHHHHHHh-cccccccHHHHHHHHHHHHHHHhhccCCcEEEEe
Confidence 3344456666655544322 2334678999999999999999987 6778888888877654332221 100
Q ss_pred -------------------CC-----------CCeEEEEccCCCC---CCCCCcccEEEeccccCCCCCHHHHHHHHHHh
Q 016981 206 -------------------LA-----------DKVSFQVGDALQQ---PFPDGQFDLVWSMESGEHMPDKSKFVSELARV 252 (379)
Q Consensus 206 -------------------~~-----------~~i~~~~~d~~~~---~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~ 252 (379)
.| .......+|+.+. +-..+.||+|+..+.+....+.-..++.|..+
T Consensus 206 fIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~i 285 (369)
T KOG2798|consen 206 FIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKI 285 (369)
T ss_pred eeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHh
Confidence 00 0111122333322 11234799999998888878889999999999
Q ss_pred cCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEecCCCccc
Q 016981 253 TAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAP 325 (379)
Q Consensus 253 LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~ 325 (379)
|||||..+-.....-...+....- ....+ -++.+++..+.+..||+++..+.+......
T Consensus 286 Lk~GGvWiNlGPLlYHF~d~~g~~------------~~~si--Els~edl~~v~~~~GF~~~ke~~Idt~Y~~ 344 (369)
T KOG2798|consen 286 LKPGGVWINLGPLLYHFEDTHGVE------------NEMSI--ELSLEDLKRVASHRGFEVEKERGIDTTYGT 344 (369)
T ss_pred ccCCcEEEeccceeeeccCCCCCc------------ccccc--cccHHHHHHHHHhcCcEEEEeeeeecccCC
Confidence 999999877653322111111100 00001 137899999999999999988755554444
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.4e-05 Score=72.64 Aligned_cols=106 Identities=22% Similarity=0.333 Sum_probs=83.0
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--CC-CCcccEEE
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FP-DGQFDLVW 231 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~-~~~fD~V~ 231 (379)
++.+|||+.++.|.=+.+++... +..|+++|.++.-++..++++++.|+. |+.....|....+ .+ .++||.|+
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~~~~~~fD~iL 234 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELLPGGEKFDRIL 234 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEecccccccccccccCcCcEEE
Confidence 48999999999999999998876 356799999999999999999999984 6788888876543 22 23599998
Q ss_pred e------ccccCCCCC----------------HHHHHHHHHHhcCCCCEEEEEec
Q 016981 232 S------MESGEHMPD----------------KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 232 ~------~~~l~~~~~----------------~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+ .+++.-=++ ..++|..+.++|||||.|+.++-
T Consensus 235 lDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 235 LDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred ECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 4 233321122 14688899999999999999874
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.8e-05 Score=62.07 Aligned_cols=99 Identities=24% Similarity=0.350 Sum_probs=71.0
Q ss_pred CCCEEEEeCCcccHHHHHHHH-----HcCCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEEEEccCCCCCCCCCcccEE
Q 016981 158 RPKNVVDVGCGIGGSSRYLAK-----KFGAKCQGITLSPVQAQRANALAAARG--LADKVSFQVGDALQQPFPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~-----~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~fD~V 230 (379)
+..+|+|+|||.|.++..++. ..+.+|+|+|.++..++.++++.+..+ +..++.+..++...... ....+++
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 103 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDIL 103 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeEE
Confidence 478999999999999999998 557899999999999999999988776 44567777666554422 4566777
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEE
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~ 262 (379)
+..+.=..+. ..+++.+.+ |+-..++.
T Consensus 104 vgLHaCG~Ls--~~~l~~~~~---~~~~~l~~ 130 (141)
T PF13679_consen 104 VGLHACGDLS--DRALRLFIR---PNARFLVL 130 (141)
T ss_pred EEeecccchH--HHHHHHHHH---cCCCEEEE
Confidence 7654443332 445555555 66555543
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.5e-06 Score=71.26 Aligned_cols=110 Identities=24% Similarity=0.299 Sum_probs=69.2
Q ss_pred HHHHHHHHcC-CCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC
Q 016981 141 MIEETLRFAG-VSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (379)
Q Consensus 141 ~~~~~l~~~~-~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 217 (379)
.+.++.+..+ +.. .++.+|||+||++|.|+..+.++. ..+|+|+|+.+.. ..+++.+..+|+
T Consensus 8 KL~ei~~~~~~~~~---~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~------------~~~~~~~i~~d~ 72 (181)
T PF01728_consen 8 KLYEIDEKFKIFKP---GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD------------PLQNVSFIQGDI 72 (181)
T ss_dssp HHHHHHHTTSSS-T---TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG------------S-TTEEBTTGGG
T ss_pred HHHHHHHHCCCCCc---ccccEEEEcCCcccceeeeeeecccccceEEEEeccccc------------cccceeeeeccc
Confidence 4555666555 221 135899999999999999999986 4799999998751 114566667776
Q ss_pred CCCC--------CC--CCcccEEEeccccCCCCC----H-------HHHHHHHHHhcCCCCEEEEEecc
Q 016981 218 LQQP--------FP--DGQFDLVWSMESGEHMPD----K-------SKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 218 ~~~~--------~~--~~~fD~V~~~~~l~~~~~----~-------~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
.+.. +. .+.||+|++-.......+ . ...+.-+...|+|||.+++-.+.
T Consensus 73 ~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 73 TNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp EEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred chhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 4421 11 268999998774433322 1 23444556789999998887654
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.4e-05 Score=65.81 Aligned_cols=156 Identities=16% Similarity=0.130 Sum_probs=90.9
Q ss_pred HHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC--CEEEEEeCCHHHH----H--HHHHHHHHcCCCCCeEEEEc
Q 016981 144 ETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQA----Q--RANALAAARGLADKVSFQVG 215 (379)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~~----~--~a~~~~~~~~~~~~i~~~~~ 215 (379)
+.|.+.++.+ +.+|+|+=.|.|.+++.++...+ ..|+++-..+... . ..+...++.. ..|++.+-.
T Consensus 39 E~L~FaGlkp-----g~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~-~aN~e~~~~ 112 (238)
T COG4798 39 EVLAFAGLKP-----GATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV-YANVEVIGK 112 (238)
T ss_pred ceeEEeccCC-----CCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh-hhhhhhhCC
Confidence 4455667765 99999999999999999998763 3676664433210 0 1111111111 124444444
Q ss_pred cCCCCCCCCCcccEEEeccccCC-------CCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHh
Q 016981 216 DALQQPFPDGQFDLVWSMESGEH-------MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC 288 (379)
Q Consensus 216 d~~~~~~~~~~fD~V~~~~~l~~-------~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (379)
+...++ +.+..|++.....-+- -.....+.+.+++.|||||.+++.+........... ..
T Consensus 113 ~~~A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~d------t~------ 179 (238)
T COG4798 113 PLVALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSD------TI------ 179 (238)
T ss_pred cccccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhh------hh------
Confidence 433333 3345555554322221 123478899999999999999998854322111100 00
Q ss_pred hccCCCCCCCHHHHHHHHHhCCCceeEEEecCCC
Q 016981 289 DAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQN 322 (379)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 322 (379)
.. ...++..+....+.+||.......+..+
T Consensus 180 ~~----~ri~~a~V~a~veaaGFkl~aeS~ilaN 209 (238)
T COG4798 180 TL----HRIDPAVVIAEVEAAGFKLEAESEILAN 209 (238)
T ss_pred hh----cccChHHHHHHHHhhcceeeeeehhhcC
Confidence 01 1337888999999999998776655443
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.1e-05 Score=69.21 Aligned_cols=98 Identities=26% Similarity=0.358 Sum_probs=73.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC----CCCCCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~V~~~~ 234 (379)
...|+|.-||.|..++..+.+ +..|++||++|.-+.-|+.+++..|+++++.|+++|+.++ .+....+|+|+.+-
T Consensus 95 ~~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred cchhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 568999999999999999887 7899999999999999999999999999999999998775 24444566777654
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCC
Q 016981 235 SGEHMPDKSKFVSELARVTAPAG 257 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG 257 (379)
....-.-...-+-.+...++|.|
T Consensus 174 pwggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 174 PWGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred CCCCcchhhhhhhhhhhhcchhH
Confidence 44332222333344445555553
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0001 Score=69.36 Aligned_cols=118 Identities=24% Similarity=0.264 Sum_probs=86.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC---------------------------------C-----
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG---------------------------------A----- 182 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~---------------------------------~----- 182 (379)
+...++...+..+ +..++|-=||+|.+.+..|-... +
T Consensus 179 LAaAil~lagw~~-----~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~ 253 (381)
T COG0116 179 LAAAILLLAGWKP-----DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKE 253 (381)
T ss_pred HHHHHHHHcCCCC-----CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCc
Confidence 4444555555554 67899999999999998876531 1
Q ss_pred --EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC-CCCCH---H----HHHHHHHHh
Q 016981 183 --KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE-HMPDK---S----KFVSELARV 252 (379)
Q Consensus 183 --~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~-~~~~~---~----~~l~~~~r~ 252 (379)
.++|+|+++.+++.|+.++...|+.+.|.|.++|+..+.-+-+.+|+|+++--.. -+.+. . .+.+.+.+.
T Consensus 254 ~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~ 333 (381)
T COG0116 254 LPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRL 333 (381)
T ss_pred cceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHH
Confidence 3779999999999999999999999999999999999854337899999974332 22222 2 233344456
Q ss_pred cCCCCEEEEEe
Q 016981 253 TAPAGTIIIVT 263 (379)
Q Consensus 253 LkpgG~l~i~~ 263 (379)
++--+..+++.
T Consensus 334 ~~~ws~~v~tt 344 (381)
T COG0116 334 LAGWSRYVFTT 344 (381)
T ss_pred hcCCceEEEEc
Confidence 66666777665
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.6e-05 Score=70.29 Aligned_cols=104 Identities=22% Similarity=0.248 Sum_probs=77.3
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
..++.+++.+.+.. +..|||+|+|+|.++..|++. +.+|+++|+++.+.+..++++. ..+++.++.+|+.+
T Consensus 17 ~~~~~Iv~~~~~~~-----~~~VlEiGpG~G~lT~~L~~~-~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 17 NIADKIVDALDLSE-----GDTVLEIGPGPGALTRELLKR-GKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLK 87 (262)
T ss_dssp HHHHHHHHHHTCGT-----TSEEEEESSTTSCCHHHHHHH-SSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTT
T ss_pred HHHHHHHHhcCCCC-----CCEEEEeCCCCccchhhHhcc-cCcceeecCcHhHHHHHHHHhh---hcccceeeecchhc
Confidence 46667777776654 899999999999999999998 5899999999999999988765 23689999999998
Q ss_pred CCCCC---CcccEEEeccccCCCCCHHHHHHHHHHhcCC
Q 016981 220 QPFPD---GQFDLVWSMESGEHMPDKSKFVSELARVTAP 255 (379)
Q Consensus 220 ~~~~~---~~fD~V~~~~~l~~~~~~~~~l~~~~r~Lkp 255 (379)
..... +....|+++-.. ++ ...++.++...-+.
T Consensus 88 ~~~~~~~~~~~~~vv~NlPy-~i--s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 88 WDLYDLLKNQPLLVVGNLPY-NI--SSPILRKLLELYRF 123 (262)
T ss_dssp SCGGGHCSSSEEEEEEEETG-TG--HHHHHHHHHHHGGG
T ss_pred cccHHhhcCCceEEEEEecc-cc--hHHHHHHHhhcccc
Confidence 76543 345566665433 22 24566666664444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.7e-05 Score=64.22 Aligned_cols=104 Identities=19% Similarity=0.264 Sum_probs=80.6
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC--CCCCCcccEEEeccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMES 235 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~~~~ 235 (379)
++.+||.||-|-|+....+.+.-..+-+.++..|..++..+...-.. ..|+....+--++. .++++.||.|+---.
T Consensus 101 kggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred CCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc--ccceEEEecchHhhhccccccCcceeEeech
Confidence 38999999999999988888765556778899999988777643211 24677776665553 367889999986544
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
-++..|...+.+.+.|+|||+|++-+..
T Consensus 179 ~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 179 SELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 4777888899999999999999987765
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.7e-06 Score=67.42 Aligned_cols=99 Identities=24% Similarity=0.384 Sum_probs=44.4
Q ss_pred EEeCCcccHHHHHHHHHc--C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC--CCCCCcccEEEecccc
Q 016981 163 VDVGCGIGGSSRYLAKKF--G--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMESG 236 (379)
Q Consensus 163 LDiGcGtG~~~~~l~~~~--~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~~~~l 236 (379)
||+|+..|..+..+++.. . .+++++|..+. .+.+++..++.++..+++++.++..+. .++.++||+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD- 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence 689999999988888755 2 37999999985 334444444455667899999998654 233578999986542
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|..+.....+..+.+.|+|||.+++-+
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 222334677888999999999998865
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.9e-05 Score=70.96 Aligned_cols=104 Identities=27% Similarity=0.305 Sum_probs=86.6
Q ss_pred CC-EEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PK-NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~-~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
.. ++|-+|||.-.+...+-+.+-..++-+|+|+..++....+... . .+.+.+...|+..+.|++++||+|+.-+.+.
T Consensus 48 ~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~-~-~~~~~~~~~d~~~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 48 SDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK-E-RPEMQMVEMDMDQLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred hhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc-C-CcceEEEEecchhccCCCcceeEEEecCccc
Confidence 44 9999999999988888876545899999999999887776542 2 2578999999999999999999999999998
Q ss_pred CCC-C---------HHHHHHHHHHhcCCCCEEEEEec
Q 016981 238 HMP-D---------KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 238 ~~~-~---------~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
++- + ....+.++.|+|+|||+++....
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 872 1 13567899999999999888776
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.7e-05 Score=69.97 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=72.5
Q ss_pred HHHHHHHHcCCCC---CCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC
Q 016981 141 MIEETLRFAGVSE---DPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (379)
Q Consensus 141 ~~~~~l~~~~~~~---~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 217 (379)
.+.+.+....... ....++.++||+||++|.|+..+.++ |.+|++||..+ |-.. +. -.+++.....|.
T Consensus 191 KLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~-l~~~----L~---~~~~V~h~~~d~ 261 (357)
T PRK11760 191 KLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGP-MAQS----LM---DTGQVEHLRADG 261 (357)
T ss_pred HHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechh-cCHh----hh---CCCCEEEEeccC
Confidence 4555555444321 12346899999999999999999998 78999999654 2221 11 125788888887
Q ss_pred CCCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCC
Q 016981 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPA 256 (379)
Q Consensus 218 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~Lkpg 256 (379)
.....+.+.+|.|+|-.+ ..|.++++-+.+.|..|
T Consensus 262 fr~~p~~~~vDwvVcDmv----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 262 FKFRPPRKNVDWLVCDMV----EKPARVAELMAQWLVNG 296 (357)
T ss_pred cccCCCCCCCCEEEEecc----cCHHHHHHHHHHHHhcC
Confidence 665322678999998643 45678888888998777
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.7e-05 Score=64.34 Aligned_cols=101 Identities=21% Similarity=0.163 Sum_probs=79.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
...+.|+|.|+|.++...++. ..+|++++.+|.....|.+++.-.|. .|++++.+|+.+..| ...|+|+|-..=..
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f--e~ADvvicEmlDTa 108 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF--ENADVVICEMLDTA 108 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc--cccceeHHHHhhHH
Confidence 467999999999999988876 67999999999999999999866665 689999999988877 56799986422111
Q ss_pred --CCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 239 --MPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 239 --~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
......+++.+...||-++.++=..
T Consensus 109 Li~E~qVpV~n~vleFLr~d~tiiPq~ 135 (252)
T COG4076 109 LIEEKQVPVINAVLEFLRYDPTIIPQE 135 (252)
T ss_pred hhcccccHHHHHHHHHhhcCCccccHH
Confidence 1333577888888999998876543
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00012 Score=73.77 Aligned_cols=77 Identities=19% Similarity=0.115 Sum_probs=54.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHcC---------CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFG---------AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FPD 224 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~---------~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~ 224 (379)
..+|||.|||+|.+...+++... ..++|+|+++..+..++.++...+. ..+.+...|..... -..
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeeccccccccccccccc
Confidence 57999999999999988877551 4789999999999999998876541 23444544433211 112
Q ss_pred CcccEEEecccc
Q 016981 225 GQFDLVWSMESG 236 (379)
Q Consensus 225 ~~fD~V~~~~~l 236 (379)
+.||+|+++=-.
T Consensus 111 ~~fD~IIgNPPy 122 (524)
T TIGR02987 111 DLFDIVITNPPY 122 (524)
T ss_pred CcccEEEeCCCc
Confidence 579999986433
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00018 Score=66.44 Aligned_cols=106 Identities=23% Similarity=0.205 Sum_probs=77.6
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHH--HHc----CCCCCeEEEEccCCCC-CCCCCcccE
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALA--AAR----GLADKVSFQVGDALQQ-PFPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~--~~~----~~~~~i~~~~~d~~~~-~~~~~~fD~ 229 (379)
...+||-+|.|.|.-++.+.+.- -.+++-+|++|.|++.++++. ... --.+++.++..|+... .-..+.||.
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 36799999999999999999864 368999999999999998432 221 1236788898888764 233568999
Q ss_pred EEeccccCCCCC-----HHHHHHHHHHhcCCCCEEEEEe
Q 016981 230 VWSMESGEHMPD-----KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 230 V~~~~~l~~~~~-----~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|+...-=-.-+. -.++..-+.+.|+++|.+++..
T Consensus 369 vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 369 VIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred EEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 986321111111 1567888999999999999875
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00012 Score=67.38 Aligned_cols=105 Identities=23% Similarity=0.336 Sum_probs=83.2
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C-CCCCcccEEEe-
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-FPDGQFDLVWS- 232 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~~~~fD~V~~- 232 (379)
++.+|||+.++.|.=+..+++.. .+.+++.|+++.-+...++++++.|. .++.....|.... + .....||.|+.
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-FNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-ceEEEEeeccccccccccccccchhhcC
Confidence 38899999999999999999887 47999999999999999999999987 5787777777665 2 22346999995
Q ss_pred -----ccccCCCCCH----------------HHHHHHHHHhc----CCCCEEEEEe
Q 016981 233 -----MESGEHMPDK----------------SKFVSELARVT----APAGTIIIVT 263 (379)
Q Consensus 233 -----~~~l~~~~~~----------------~~~l~~~~r~L----kpgG~l~i~~ 263 (379)
.+++..-++. .++|+.+.+.+ ||||+++.++
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 2233333331 46889999999 9999999987
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00036 Score=60.65 Aligned_cols=103 Identities=18% Similarity=0.251 Sum_probs=72.0
Q ss_pred CCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC---CCCCcccE
Q 016981 155 PTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDL 229 (379)
Q Consensus 155 ~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~ 229 (379)
+.+++.+||-+|..+|....++++-. .+.|++++.|+......-..+++. +|+--+..|+.... .--+..|+
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~VDv 146 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEMVDV 146 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--EEE
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhcccccccE
Confidence 34459999999999999999999876 469999999997655544444433 58988999987531 11358999
Q ss_pred EEeccccCCCCCH-HHHHHHHHHhcCCCCEEEEEe
Q 016981 230 VWSMESGEHMPDK-SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 230 V~~~~~l~~~~~~-~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|++--. + ++. .-++.++...||+||.++++-
T Consensus 147 I~~DVa--Q-p~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 147 IFQDVA--Q-PDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEE-S--S-TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEecCC--C-hHHHHHHHHHHHhhccCCcEEEEEE
Confidence 986422 2 344 556777888999999999875
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.76 E-value=4.1e-05 Score=73.80 Aligned_cols=75 Identities=27% Similarity=0.414 Sum_probs=63.0
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
..+...+-+++++.. +..+||+-||||.++..+++. -.+|+||++++..++.|+.+++.+|+ .|.+|+++-++
T Consensus 369 evLys~i~e~~~l~~-----~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ngi-sNa~Fi~gqaE 441 (534)
T KOG2187|consen 369 EVLYSTIGEWAGLPA-----DKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGI-SNATFIVGQAE 441 (534)
T ss_pred HHHHHHHHHHhCCCC-----CcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCc-cceeeeecchh
Confidence 334444455666665 789999999999999999987 46999999999999999999999998 69999999666
Q ss_pred CC
Q 016981 219 QQ 220 (379)
Q Consensus 219 ~~ 220 (379)
++
T Consensus 442 ~~ 443 (534)
T KOG2187|consen 442 DL 443 (534)
T ss_pred hc
Confidence 64
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0012 Score=57.10 Aligned_cols=125 Identities=15% Similarity=0.156 Sum_probs=92.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.++.||||-.|.+..++.+.. ...+++.|+++.-++.|.+++...++.++++...+|....--+++.+|.|+..++=.
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMGG 96 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMGG 96 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCcH
Confidence 5669999999999999999987 568999999999999999999999998899999999744222345799998776544
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEE
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
.+ ...+|.+-...|+.=-++++.- -....+++++|.+.+|+.+...
T Consensus 97 ~l--I~~ILee~~~~l~~~~rlILQP--------------------------------n~~~~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 97 TL--IREILEEGKEKLKGVERLILQP--------------------------------NIHTYELREWLSANSYEIKAET 142 (226)
T ss_pred HH--HHHHHHHhhhhhcCcceEEECC--------------------------------CCCHHHHHHHHHhCCceeeeee
Confidence 32 2455555555555333444421 1146678888888888776654
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00012 Score=60.24 Aligned_cols=58 Identities=22% Similarity=0.246 Sum_probs=49.6
Q ss_pred EEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 161 NVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
.+||+|||.|.++..+++.. +.+|+++|+++.+.+.++++++.++++ ++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 48999999999999999876 458999999999999999999887763 68887776654
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0002 Score=58.03 Aligned_cols=81 Identities=20% Similarity=0.282 Sum_probs=59.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--CCCCcccEEEeccccCCCC--C------H---HHHHHHH
Q 016981 183 KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMESGEHMP--D------K---SKFVSEL 249 (379)
Q Consensus 183 ~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~~~l~~~~--~------~---~~~l~~~ 249 (379)
+|+|+|+-+++++.++++++..++..++.++..+-+.+. .+.+++|+|+.+ |.++| | + ..+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 589999999999999999999998888999998877663 233589998865 44553 2 2 4688899
Q ss_pred HHhcCCCCEEEEEecc
Q 016981 250 ARVTAPAGTIIIVTWC 265 (379)
Q Consensus 250 ~r~LkpgG~l~i~~~~ 265 (379)
.++|+|||.+.++.+.
T Consensus 79 l~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 79 LELLKPGGIITIVVYP 94 (140)
T ss_dssp HHHEEEEEEEEEEE--
T ss_pred HHhhccCCEEEEEEeC
Confidence 9999999999998754
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.71 E-value=6.8e-05 Score=65.58 Aligned_cols=150 Identities=13% Similarity=0.110 Sum_probs=97.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeE-EEEccCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVS-FQVGDALQ 219 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~-~~~~d~~~ 219 (379)
.+...++...+.. ++..+||+|..||.++..+.++....|+++|..-.++.+--+. .+++. +...|+..
T Consensus 66 KL~~ale~F~l~~----k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~ 135 (245)
T COG1189 66 KLEKALEEFELDV----KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRY 135 (245)
T ss_pred HHHHHHHhcCcCC----CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc------CCcEEEEecCChhh
Confidence 4555666555554 5899999999999999999998667899999999888763221 23443 44456555
Q ss_pred CC---CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCC--
Q 016981 220 QP---FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP-- 294 (379)
Q Consensus 220 ~~---~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 294 (379)
+. + .+..|++++--++..+ ..+|..+..+++|+|.++... .++.... ... +.......
T Consensus 136 l~~~~~-~~~~d~~v~DvSFISL---~~iLp~l~~l~~~~~~~v~Lv--KPQFEag--------r~~---v~kkGvv~d~ 198 (245)
T COG1189 136 LTPEDF-TEKPDLIVIDVSFISL---KLILPALLLLLKDGGDLVLLV--KPQFEAG--------REQ---VGKKGVVRDP 198 (245)
T ss_pred CCHHHc-ccCCCeEEEEeehhhH---HHHHHHHHHhcCCCceEEEEe--cchhhhh--------hhh---cCcCceecCc
Confidence 42 3 2468899987666654 788999999999999877754 1111000 000 10110010
Q ss_pred --CCCCHHHHHHHHHhCCCceeEEE
Q 016981 295 --AWCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 295 --~~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
.-.-..++.+++++.||....+.
T Consensus 199 ~~~~~v~~~i~~~~~~~g~~~~gl~ 223 (245)
T COG1189 199 KLHAEVLSKIENFAKELGFQVKGLI 223 (245)
T ss_pred chHHHHHHHHHHHHhhcCcEEeeeE
Confidence 01135677888899999987764
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00052 Score=62.96 Aligned_cols=81 Identities=15% Similarity=0.166 Sum_probs=50.5
Q ss_pred CCEEEEeCCcccH-HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEccCCC-----CCCCCCcccEEE
Q 016981 159 PKNVVDVGCGIGG-SSRYLAKKFGAKCQGITLSPVQAQRANALAAAR-GLADKVSFQVGDALQ-----QPFPDGQFDLVW 231 (379)
Q Consensus 159 ~~~vLDiGcGtG~-~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~-----~~~~~~~fD~V~ 231 (379)
..++||||||... .....++.++.+++|+|+++..++.|++++..+ ++..+|.++...-.. +..+++.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 6789999999864 455555556999999999999999999999998 888889887654222 112346899999
Q ss_pred eccccCCC
Q 016981 232 SMESGEHM 239 (379)
Q Consensus 232 ~~~~l~~~ 239 (379)
|+=-++.-
T Consensus 183 CNPPFy~s 190 (299)
T PF05971_consen 183 CNPPFYSS 190 (299)
T ss_dssp E-----SS
T ss_pred cCCccccC
Confidence 98777654
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00037 Score=64.33 Aligned_cols=90 Identities=13% Similarity=0.130 Sum_probs=73.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
+++++++.+...+ +..++|.-+|.|..+..+++.. .++|+|+|.++.+++.+++++... ..++.++.+++.+
T Consensus 8 ll~Evl~~L~~~~-----ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~ 80 (305)
T TIGR00006 8 LLDEVVEGLNIKP-----DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFAN 80 (305)
T ss_pred hHHHHHHhcCcCC-----CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHH
Confidence 6788888876554 7899999999999999999886 579999999999999999988754 3589999999876
Q ss_pred CC-----CCCCcccEEEeccccC
Q 016981 220 QP-----FPDGQFDLVWSMESGE 237 (379)
Q Consensus 220 ~~-----~~~~~fD~V~~~~~l~ 237 (379)
+. ....++|.|+....+.
T Consensus 81 l~~~l~~~~~~~vDgIl~DLGvS 103 (305)
T TIGR00006 81 FFEHLDELLVTKIDGILVDLGVS 103 (305)
T ss_pred HHHHHHhcCCCcccEEEEeccCC
Confidence 42 2335799999876553
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0025 Score=54.35 Aligned_cols=103 Identities=16% Similarity=0.256 Sum_probs=75.2
Q ss_pred CCCCCCEEEEeCCcccHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC---CCCCcccEE
Q 016981 155 PTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLV 230 (379)
Q Consensus 155 ~~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V 230 (379)
+.+++.+||=+|..+|....++++-.+ ..+++++.|+......-..+.+. +|+--+..|+.... .--+..|+|
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~Ve~VDvi 149 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHLVEKVDVI 149 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhhcccccEE
Confidence 344599999999999999999998764 68999999998876655555543 57888888986531 113568888
Q ss_pred EeccccCCCCCH-HHHHHHHHHhcCCCCEEEEEe
Q 016981 231 WSMESGEHMPDK-SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 231 ~~~~~l~~~~~~-~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.- +- -++. .-+..++...||+||.++++-
T Consensus 150 y~D-VA--Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 150 YQD-VA--QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred EEe-cC--CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 753 11 1333 446778899999999877764
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00025 Score=60.28 Aligned_cols=103 Identities=23% Similarity=0.252 Sum_probs=71.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC------CCCeEEEEccCCCCCCCCCcccEEE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGL------ADKVSFQVGDALQQPFPDGQFDLVW 231 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~------~~~i~~~~~d~~~~~~~~~~fD~V~ 231 (379)
...+.|||||-|.+...|+..+ ..-++|.+|-...-++.+++++..+. ..|+.+...+.... -++-|..-.
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~--lpn~f~kgq 138 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF--LPNFFEKGQ 138 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh--ccchhhhcc
Confidence 5679999999999999999998 66899999998888888888876541 24566665555442 112222222
Q ss_pred eccccCCCCCH-------------HHHHHHHHHhcCCCCEEEEEe
Q 016981 232 SMESGEHMPDK-------------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 232 ~~~~l~~~~~~-------------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
..-.+..++|+ ..++.+..-+|++||.++..+
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22223333333 357888899999999988865
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0041 Score=58.72 Aligned_cols=160 Identities=16% Similarity=0.193 Sum_probs=81.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-----------C------CEEEEEeCCHHHHH-HHHH------HHHHcCCCCCeE--
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-----------G------AKCQGITLSPVQAQ-RANA------LAAARGLADKVS-- 211 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-----------~------~~v~gvD~s~~~~~-~a~~------~~~~~~~~~~i~-- 211 (379)
...+|+|+||.+|..+..+.... + .+|+--|+-..-.. ..+. .... ..++-
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~---~~~~f~~ 92 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK---FRNYFVS 92 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH---TTSEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC---CceEEEE
Confidence 36899999999999887655422 1 26777886332111 1111 1111 12332
Q ss_pred EEEccCCCCCCCCCcccEEEeccccCCCCCH---------------------------------------HHHHHHHHHh
Q 016981 212 FQVGDALQQPFPDGQFDLVWSMESGEHMPDK---------------------------------------SKFVSELARV 252 (379)
Q Consensus 212 ~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---------------------------------------~~~l~~~~r~ 252 (379)
-+-+.+..--+|+++.|++++...+|++... ..+|+.=++-
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 172 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE 172 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 2234555545789999999999999987310 1133333456
Q ss_pred cCCCCEEEEEeccCCCCCCCcc---ccchHHHHHHHHHhh----------ccCCC-CCCCHHHHHHHHHhCC-CceeEEE
Q 016981 253 TAPAGTIIIVTWCHRDLAPSEE---SLQPWEQELLKKICD----------AYYLP-AWCSTADYVKLLQSLS-LEDIKAE 317 (379)
Q Consensus 253 LkpgG~l~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~~~~l~~aG-F~~v~~~ 317 (379)
|+|||++++.-...++..+... .+.......+..... .+.+| ++.+.+++++.+++.| |++...+
T Consensus 173 Lv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~le 252 (334)
T PF03492_consen 173 LVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKLE 252 (334)
T ss_dssp EEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEEE
T ss_pred eccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEEE
Confidence 8999999999876665322222 122222233333222 22333 3569999999998887 7765555
Q ss_pred ecC
Q 016981 318 DWS 320 (379)
Q Consensus 318 ~~~ 320 (379)
.+.
T Consensus 253 ~~~ 255 (334)
T PF03492_consen 253 LFE 255 (334)
T ss_dssp EEE
T ss_pred EEe
Confidence 444
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0013 Score=58.49 Aligned_cols=90 Identities=21% Similarity=0.255 Sum_probs=67.4
Q ss_pred HHHHHHcCCCCCCCCCCC--EEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc------C--CCCCeEE
Q 016981 143 EETLRFAGVSEDPTKRPK--NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR------G--LADKVSF 212 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~--~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~--~~~~i~~ 212 (379)
+.+++..+++. +. +|||+-+|+|..+..++.+ |++|+++|-++......+..++.. + +..++++
T Consensus 76 ~~l~kAvglk~-----g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l 149 (250)
T PRK10742 76 EAVAKAVGIKG-----DYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQL 149 (250)
T ss_pred cHHHHHhCCCC-----CCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEE
Confidence 34455556554 55 8999999999999999987 788999999999999888888764 2 1246888
Q ss_pred EEccCCCC-CCCCCcccEEEeccccCC
Q 016981 213 QVGDALQQ-PFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 213 ~~~d~~~~-~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|..+. .-...+||+|++-=++.|
T Consensus 150 ~~~da~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 150 IHASSLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred EeCcHHHHHhhCCCCCcEEEECCCCCC
Confidence 88887654 212347999987666655
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=4.3e-05 Score=61.94 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=44.0
Q ss_pred eEEEEccCCCCCCCCCcccEEEeccccCCCC--CHHHHHHHHHHhcCCCCEEEEEec
Q 016981 210 VSFQVGDALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 210 i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+.+++.-....+|.+++.|+|++-++++|+. .-..++++++|.|||||+|-++..
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 3333333344578899999999999999995 346899999999999999999873
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0018 Score=54.40 Aligned_cols=99 Identities=17% Similarity=0.307 Sum_probs=67.0
Q ss_pred CCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-cCCCC--------CCCCC
Q 016981 157 KRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DALQQ--------PFPDG 225 (379)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~--------~~~~~ 225 (379)
+|+.+|||+||..|.|+....++. .+.|.|||+-.-. .+..+.++.+ |+.+. .+++.
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~------------p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE------------PPEGATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc------------CCCCcccccccccCCHHHHHHHHHhCCCC
Confidence 469999999999999999988877 4689999985422 1234555555 66652 24677
Q ss_pred cccEEEeccccCCC-----CCHHH-------HHHHHHHhcCCCCEEEEEeccCCC
Q 016981 226 QFDLVWSMESGEHM-----PDKSK-------FVSELARVTAPAGTIIIVTWCHRD 268 (379)
Q Consensus 226 ~fD~V~~~~~l~~~-----~~~~~-------~l~~~~r~LkpgG~l~i~~~~~~~ 268 (379)
..|+|++-. .+.. .|-.. ++.-....++|+|.+++-.|...+
T Consensus 136 ~VdvVlSDM-apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 136 PVDVVLSDM-APNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred cccEEEecc-CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 899998643 2222 22223 333345668899999998876543
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0014 Score=52.75 Aligned_cols=119 Identities=19% Similarity=0.198 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 016981 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (379)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d 216 (379)
+..+.++..+.++.-. +..+.+|+|+|.|+.....++..-...+|+++++-.+.+++-+.-+.|+.....|..-|
T Consensus 56 AtteQv~nVLSll~~n-----~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rkd 130 (199)
T KOG4058|consen 56 ATTEQVENVLSLLRGN-----PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKD 130 (199)
T ss_pred ccHHHHHHHHHHccCC-----CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhh
Confidence 3445666777776644 36899999999999988888763357899999999999999998888888889999989
Q ss_pred CCCCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 217 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+-+..+.+ |..|+.+.+-..++|. -.++..-|..|..++-.-|.
T Consensus 131 lwK~dl~d--y~~vviFgaes~m~dL---e~KL~~E~p~nt~vvacRFP 174 (199)
T KOG4058|consen 131 LWKVDLRD--YRNVVIFGAESVMPDL---EDKLRTELPANTRVVACRFP 174 (199)
T ss_pred hhhccccc--cceEEEeehHHHHhhh---HHHHHhhCcCCCeEEEEecC
Confidence 88776544 4444444443334333 33445566777777766553
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.019 Score=52.18 Aligned_cols=171 Identities=15% Similarity=0.070 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC--CCCeEEE
Q 016981 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL--ADKVSFQ 213 (379)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~i~~~ 213 (379)
....+.++..+....... ...|+.+|||-=.-...+....+..++=+|. |+.++.-++.+.+.+. +.+..++
T Consensus 64 ~~Rtr~~D~~i~~~~~~g-----~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v 137 (260)
T TIGR00027 64 AVRTRFFDDFLLAAVAAG-----IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAV 137 (260)
T ss_pred HHHHHHHHHHHHHHHhcC-----CcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEe
Confidence 345556666665432221 4579999999876665553322456666676 4566666666665432 3578888
Q ss_pred EccCCCC--------CCCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHH
Q 016981 214 VGDALQQ--------PFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQEL 283 (379)
Q Consensus 214 ~~d~~~~--------~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 283 (379)
..|+.+. .+..+..-++++-+++.+++.. .++++.+.+...||+.+++-.... ... ..........
T Consensus 138 ~~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~--~~~--~~~~~~~~~~ 213 (260)
T TIGR00027 138 PVDLRQDWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRP--LDG--EWRAGMRAPV 213 (260)
T ss_pred ccCchhhHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccc--cch--hHHHHHHHHH
Confidence 8898621 1223345578888899998653 689999999888998887754332 111 0000011111
Q ss_pred HHHH--hhccCCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 284 LKKI--CDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 284 ~~~~--~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
.... .........++++++.++|.+.||+....
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 214 YHAARGVDGSGLVFGIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred HHhhhcccccccccCCChhhHHHHHHHCCCeeecC
Confidence 1111 11112223467899999999999997654
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00031 Score=67.90 Aligned_cols=96 Identities=21% Similarity=0.241 Sum_probs=64.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGA---KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
-..|+|...|.|.++..|.+. .. +|+-+ ..+..+.. +-..|+ +-.++.=.+.++.=+.+||+|++.++
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~-~VWVMNVVP~-~~~ntL~v----IydRGL---IG~yhDWCE~fsTYPRTYDLlHA~~l 436 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDD-PVWVMNVVPV-SGPNTLPV----IYDRGL---IGVYHDWCEAFSTYPRTYDLLHADGL 436 (506)
T ss_pred eeeeeeecccccHHHHHhccC-CceEEEeccc-CCCCcchh----hhhccc---chhccchhhccCCCCcchhheehhhh
Confidence 568999999999999999875 32 22222 11222222 112232 22222112334444689999999999
Q ss_pred cCCCCC---HHHHHHHHHHhcCCCCEEEEEe
Q 016981 236 GEHMPD---KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 l~~~~~---~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+....+ ...++-|+-|+|+|||.++|-+
T Consensus 437 fs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 437 FSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 988764 4789999999999999999976
|
; GO: 0008168 methyltransferase activity |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0039 Score=58.98 Aligned_cols=106 Identities=15% Similarity=0.176 Sum_probs=82.6
Q ss_pred CCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC---CCCCcccEEE
Q 016981 157 KRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVW 231 (379)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V~ 231 (379)
.++.||||..+-.|.=+.++|... .+.|++.|.+..-+...+.++.+.|+ .+......|...+| ++. +||.|+
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-TNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-CceEEEccCcccccccccCc-ccceee
Confidence 578999999999998888887766 46899999999999999999999998 57777778877665 443 899998
Q ss_pred e----cc--ccCCC------C---C-------HHHHHHHHHHhcCCCCEEEEEec
Q 016981 232 S----ME--SGEHM------P---D-------KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 232 ~----~~--~l~~~------~---~-------~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
. +. ++.-- . + ..++|..+..+++|||+|+.++-
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence 4 33 22211 1 0 14678888899999999999874
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0013 Score=58.44 Aligned_cols=79 Identities=24% Similarity=0.369 Sum_probs=60.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+|+|||||.--++....... +..|+|+|++..+++..+..+...++ +..+...|....+ +....|+.+..-+++
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~~~~-~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLLSDP-PKEPADLALLLKTLP 182 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSH-TTSEESEEEEET-HH
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeeeccC-CCCCcchhhHHHHHH
Confidence 7899999999999988877654 67999999999999999999888775 5777777877664 357799999887777
Q ss_pred CCC
Q 016981 238 HMP 240 (379)
Q Consensus 238 ~~~ 240 (379)
.+.
T Consensus 183 ~le 185 (251)
T PF07091_consen 183 CLE 185 (251)
T ss_dssp HHH
T ss_pred HHH
Confidence 663
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0012 Score=57.03 Aligned_cols=103 Identities=18% Similarity=0.300 Sum_probs=56.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----C----CCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----F----PDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~----~~~ 225 (379)
++.|+|+|.-.|..+..+|+.+ .++|+|+|++...... +..+...+.++++++++|..+.. . ...
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence 8999999999998887776543 3699999995433221 11122233478999999987642 1 112
Q ss_pred cccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 226 QFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 226 ~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
...+|+ -.+-|.-.+..+.|+....+++||+++++.|.
T Consensus 111 ~~vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 111 HPVLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp SSEEEE-ESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred CceEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 333444 33333335568888889999999999999773
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0072 Score=53.97 Aligned_cols=104 Identities=22% Similarity=0.166 Sum_probs=71.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH-----cCCCCCeEEEEccCCCC---CCCCCc-ccE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA-----RGLADKVSFQVGDALQQ---PFPDGQ-FDL 229 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~~~~~~i~~~~~d~~~~---~~~~~~-fD~ 229 (379)
..+||++|.|+|..+..++...++.|.-.|+...... .+.+... ..+...+.....+-... .+-... ||+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~-L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVEN-LKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHH-HHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 6789999999998888888766889999998654332 2222111 11112344444333222 122233 999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|++..++++......++.-++..|..+|.+++..
T Consensus 166 ilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 166 ILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred EEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEE
Confidence 9999999999888999999999999999666655
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0066 Score=58.95 Aligned_cols=126 Identities=15% Similarity=0.115 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHH---c--CCEEEEEeCCHHHHHHHHHHHHHcCCCC
Q 016981 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKK---F--GAKCQGITLSPVQAQRANALAAARGLAD 208 (379)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~---~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~ 208 (379)
+...++..+..+++..+... .+....|+-+|.|-|-+.....+. . ..++++++-+|.++-..+.+ ...++..
T Consensus 345 Y~~Yq~Ai~~AL~Drvpd~~--a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~W~~ 421 (649)
T KOG0822|consen 345 YDQYQQAILKALLDRVPDES--AKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFECWDN 421 (649)
T ss_pred HHHHHHHHHHHHHhhCcccc--cCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhhhcC
Confidence 34455566666666654332 112557788999999886654432 2 45899999999988776653 3334567
Q ss_pred CeEEEEccCCCCCCCCCcccEEEeccccCCCCCH---HHHHHHHHHhcCCCCEEEEEe
Q 016981 209 KVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK---SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 209 ~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---~~~l~~~~r~LkpgG~l~i~~ 263 (379)
++.++..|+...+-|..+.|+++ ...|..+.|- .+.|..+-+.|||+|..+=..
T Consensus 422 ~Vtii~~DMR~w~ap~eq~DI~V-SELLGSFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 422 RVTIISSDMRKWNAPREQADIIV-SELLGSFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred eeEEEeccccccCCchhhccchH-HHhhccccCccCCHHHHHHHHhhcCCCceEccch
Confidence 89999999999875558899987 4666666554 789999999999998765433
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.043 Score=48.46 Aligned_cols=145 Identities=19% Similarity=0.252 Sum_probs=89.7
Q ss_pred HHccC-chhHHHhhhccccccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc
Q 016981 102 FYDES-SSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF 180 (379)
Q Consensus 102 ~yd~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~ 180 (379)
|||.. ...|+++.. -+.||..... ....+....++....+ +...+|+|.|+..-++.|.+.+
T Consensus 38 FYD~~GS~LFe~I~~---LPEYYpTRtE------aaIl~~~a~Eia~~~g--------~~~lveLGsGns~Ktr~Llda~ 100 (321)
T COG4301 38 FYDDRGSELFEQITR---LPEYYPTRTE------AAILQARAAEIASITG--------ACTLVELGSGNSTKTRILLDAL 100 (321)
T ss_pred eecccHHHHHHHHhc---cccccCchhH------HHHHHHHHHHHHHhhC--------cceEEEecCCccHHHHHHHHHh
Confidence 55554 344554432 3567765542 2223334444444433 7899999999998888777765
Q ss_pred -C----CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-CC-CCC-CcccEEEeccccCCCC--CHHHHHHHHH
Q 016981 181 -G----AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QP-FPD-GQFDLVWSMESGEHMP--DKSKFVSELA 250 (379)
Q Consensus 181 -~----~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~-~~~-~~fD~V~~~~~l~~~~--~~~~~l~~~~ 250 (379)
. .+++.+|+|...+....+.+...-..-.+.-+++|++. +. .+. ++-=.++...++..+. +-..+|.++.
T Consensus 101 ~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~ 180 (321)
T COG4301 101 AHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLR 180 (321)
T ss_pred hhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEEEecccccCCChHHHHHHHHHHH
Confidence 2 58999999999887655544443222235556667643 11 222 2222344456677763 3367899999
Q ss_pred HhcCCCCEEEEEe
Q 016981 251 RVTAPAGTIIIVT 263 (379)
Q Consensus 251 r~LkpgG~l~i~~ 263 (379)
..|+||-++++..
T Consensus 181 ~a~~pGd~~LlGv 193 (321)
T COG4301 181 GALRPGDYFLLGV 193 (321)
T ss_pred hcCCCcceEEEec
Confidence 9999999998854
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.011 Score=55.24 Aligned_cols=95 Identities=22% Similarity=0.168 Sum_probs=68.1
Q ss_pred CCCCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc-CCCCCCCCCcccEEEecc
Q 016981 157 KRPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD-ALQQPFPDGQFDLVWSME 234 (379)
Q Consensus 157 ~~~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~fD~V~~~~ 234 (379)
.|+.+|+=+|+| .|..+..+++..+++|+++|.|++-.+.|++.-+ -.++... .....--.+.||+|+..-
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA-------d~~i~~~~~~~~~~~~~~~d~ii~tv 237 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA-------DHVINSSDSDALEAVKEIADAIIDTV 237 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC-------cEEEEcCCchhhHHhHhhCcEEEECC
Confidence 358999998877 5678889999779999999999999999888532 2223222 111111123499998653
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
. ...+....+.||+||.+++....
T Consensus 238 ~-------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 G-------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred C-------hhhHHHHHHHHhcCCEEEEECCC
Confidence 3 45688888999999999998865
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.15 Score=45.24 Aligned_cols=130 Identities=15% Similarity=0.096 Sum_probs=74.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CC-CCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PF-PDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~-~~~~fD~V~~~~~ 235 (379)
+++||-+|=+-- .++.++-.. ..+|+.+|+++..++..++.+++.|++ ++.+..|+.+. |- -.++||++++. -
T Consensus 45 gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD~f~TD-P 120 (243)
T PF01861_consen 45 GKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFDVFFTD-P 120 (243)
T ss_dssp T-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSEEEE---
T ss_pred CCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCCEEEeC-C
Confidence 899999995543 334444333 789999999999999999999999984 99999998763 31 24889999863 1
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeE
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 315 (379)
-+-+.-..-++.+....||..|...+..+.+.... .. ...++++.|.+.||.+.+
T Consensus 121 PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s-----~~--------------------~~~~~Q~~l~~~gl~i~d 175 (243)
T PF01861_consen 121 PYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEAS-----PD--------------------KWLEVQRFLLEMGLVITD 175 (243)
T ss_dssp -SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT-------HH--------------------HHHHHHHHHHTS--EEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCc-----HH--------------------HHHHHHHHHHHCCcCHHH
Confidence 12222236788899999998775555454432210 00 012467788899998776
Q ss_pred EE
Q 016981 316 AE 317 (379)
Q Consensus 316 ~~ 317 (379)
+.
T Consensus 176 ii 177 (243)
T PF01861_consen 176 II 177 (243)
T ss_dssp EE
T ss_pred HH
Confidence 53
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.02 Score=56.94 Aligned_cols=100 Identities=19% Similarity=0.297 Sum_probs=70.4
Q ss_pred CCCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-----------C--C-
Q 016981 157 KRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-----------Q--P- 221 (379)
Q Consensus 157 ~~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-----------~--~- 221 (379)
.++.+|+=+|||. |..+...++..|+.|+++|.++..++.+++. | .++...|..+ . .
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl----G----A~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM----G----AEFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEEeccccccccccchhhhcchhH
Confidence 3589999999996 7778888888899999999999998888762 2 2332222211 0 0
Q ss_pred -------CCC--CcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 222 -------FPD--GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 222 -------~~~--~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+.+ ..+|+|+..-....-+.+..+.+++.+.+||||.++....
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 3589998765544333444446999999999999888764
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.011 Score=48.74 Aligned_cols=129 Identities=18% Similarity=0.130 Sum_probs=75.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHH-HHHHHHHcCCCCCeE-EEEccCCC-CCCCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQR-ANALAAARGLADKVS-FQVGDALQ-QPFPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~-a~~~~~~~~~~~~i~-~~~~d~~~-~~~~~~~fD~V~~~~~ 235 (379)
+++++-+|...-..-........++|+.++.++--++. .+ +++. +...|+.. ..--.++||.+.+..+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~---------dr~ssi~p~df~~~~~~y~~~fD~~as~~s 72 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFR---------DRLSSILPVDFAKNWQKYAGSFDFAASFSS 72 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccc---------cccccccHHHHHHHHHHhhccchhhheech
Confidence 56788888885444333333324578888876421111 01 1111 11122211 1112478999999999
Q ss_pred cCCCC-----CH------HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHH
Q 016981 236 GEHMP-----DK------SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVK 304 (379)
Q Consensus 236 l~~~~-----~~------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (379)
++|+. |+ .+.+.++.++|||||.|++......+.. .+..++.+.+..+..
T Consensus 73 iEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i-------------------~fNahRiYg~~rL~m 133 (177)
T PF03269_consen 73 IEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAI-------------------QFNAHRIYGPIRLAM 133 (177)
T ss_pred hccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcce-------------------EEecceeecHhHHHH
Confidence 99982 32 5788999999999999999886544321 111222334555555
Q ss_pred HHHhCCCceeEEE
Q 016981 305 LLQSLSLEDIKAE 317 (379)
Q Consensus 305 ~l~~aGF~~v~~~ 317 (379)
++ .||+.+..-
T Consensus 134 m~--~gfe~i~tf 144 (177)
T PF03269_consen 134 MF--YGFEWIDTF 144 (177)
T ss_pred Hh--CCcEEEeee
Confidence 55 789888763
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.044 Score=47.39 Aligned_cols=120 Identities=13% Similarity=0.107 Sum_probs=70.7
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHc-----------
Q 016981 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG---AKCQGITLSPVQAQRANALAAAR----------- 204 (379)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~---~~v~gvD~s~~~~~~a~~~~~~~----------- 204 (379)
..++.+.+..+.-. .+.++-|-.||+|.+.-.+.-.++ ..|+|-|+++.+++.|++++.-.
T Consensus 37 sEi~qR~l~~l~~~-----~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~e 111 (246)
T PF11599_consen 37 SEIFQRALHYLEGK-----GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREE 111 (246)
T ss_dssp HHHHHHHHCTSSS------S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCC-----CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHH
Confidence 34445555544333 378999999999998766655442 47999999999999999864211
Q ss_pred ------------------------------CCCCCeEEEEccCCCCC-----CCCCcccEEEeccccCCCCCH-------
Q 016981 205 ------------------------------GLADKVSFQVGDALQQP-----FPDGQFDLVWSMESGEHMPDK------- 242 (379)
Q Consensus 205 ------------------------------~~~~~i~~~~~d~~~~~-----~~~~~fD~V~~~~~l~~~~~~------- 242 (379)
|-.......+.|+.+.. -.....|+|+.---..++.+|
T Consensus 112 L~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~ 191 (246)
T PF11599_consen 112 LRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGG 191 (246)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCC
Confidence 11223667888887621 112336999987666666544
Q ss_pred --HHHHHHHHHhcCCCCEEEEEe
Q 016981 243 --SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 243 --~~~l~~~~r~LkpgG~l~i~~ 263 (379)
..+|..++.+|.+++++++++
T Consensus 192 p~~~ml~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 192 PVAQMLNSLAPVLPERSVVAVSD 214 (246)
T ss_dssp HHHHHHHHHHCCS-TT-EEEEEE
T ss_pred cHHHHHHHHHhhCCCCcEEEEec
Confidence 579999999996566666644
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0082 Score=57.50 Aligned_cols=101 Identities=18% Similarity=0.210 Sum_probs=77.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEccCCCCC-CCCCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQQP-FPDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~-~~~~~fD~V~~~~ 234 (379)
+.+|||.=+|+|.=++..+... ..+|+.-|+|+.+++..+++++.+++.. .+.+...|+..+- .....||+|=.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl-- 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL-- 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe--
Confidence 5699999999999888888774 3689999999999999999999999877 6888888887652 24678999963
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 235 SGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.-+..+..+|..+.+.+|.||.|.++.
T Consensus 128 --DPfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 --DPFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp ----SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred --CCCCCccHhHHHHHHHhhcCCEEEEec
Confidence 345567899999999999999999975
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.011 Score=61.44 Aligned_cols=103 Identities=20% Similarity=0.228 Sum_probs=62.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-------------CCEEEEEeCCH---HHHHHHH-----------HHHHH-----cCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-------------GAKCQGITLSP---VQAQRAN-----------ALAAA-----RGL 206 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-------------~~~v~gvD~s~---~~~~~a~-----------~~~~~-----~~~ 206 (379)
.-+|+|+|=|+|.......+.. ..+++++|..| ..+..+. +.... .|+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 5799999999999665554322 13788999643 3333322 22211 111
Q ss_pred ------CC--CeEEEEccCCCC-CCCCCcccEEEeccccCCCCCH----HHHHHHHHHhcCCCCEEEEE
Q 016981 207 ------AD--KVSFQVGDALQQ-PFPDGQFDLVWSMESGEHMPDK----SKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 207 ------~~--~i~~~~~d~~~~-~~~~~~fD~V~~~~~l~~~~~~----~~~l~~~~r~LkpgG~l~i~ 262 (379)
.. ++.+..+|+.+. +--...||+++.-. |.--.++ ..++++++++++|||.+.-.
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~-FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDG-FAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCC-CCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 01 344566777553 21135699998643 3332333 78999999999999998743
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.017 Score=52.67 Aligned_cols=91 Identities=18% Similarity=0.178 Sum_probs=73.5
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 217 (379)
-++.+.++.+...+ +...+|.--|.|..+..+.+++ .++++|+|-++.+++.|++++...+ +++.++..++
T Consensus 10 VLl~E~i~~L~~~~-----~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F 82 (314)
T COG0275 10 VLLNEVVELLAPKP-----DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNF 82 (314)
T ss_pred hHHHHHHHhcccCC-----CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcH
Confidence 37778888877665 7999999999999999999998 3689999999999999999997754 6899999987
Q ss_pred CCCC-----CCCCcccEEEeccccC
Q 016981 218 LQQP-----FPDGQFDLVWSMESGE 237 (379)
Q Consensus 218 ~~~~-----~~~~~fD~V~~~~~l~ 237 (379)
.++. ...+.+|.|+.-..+.
T Consensus 83 ~~l~~~l~~~~i~~vDGiL~DLGVS 107 (314)
T COG0275 83 ANLAEALKELGIGKVDGILLDLGVS 107 (314)
T ss_pred HHHHHHHHhcCCCceeEEEEeccCC
Confidence 7642 2245788887655443
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0053 Score=58.19 Aligned_cols=74 Identities=15% Similarity=0.153 Sum_probs=58.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC-CCcccEEEe
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~V~~ 232 (379)
...|||||+|||.++...++..+-.|++++.-..|.+.|++...++|+.++|.++.--.++.... ....|+++.
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhH
Confidence 45799999999999999888866689999999999999999999999999998876554444221 223565553
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0051 Score=56.83 Aligned_cols=89 Identities=20% Similarity=0.195 Sum_probs=61.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
++.++++.+...+ +..++|.--|.|..+..+++.+ +++|+|+|-++.+++.|++++... .+++.++..++.+
T Consensus 8 ll~Evl~~L~~~~-----~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 8 LLKEVLEALNPKP-----GGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSN 80 (310)
T ss_dssp THHHHHHHHT--T-----T-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGG
T ss_pred cHHHHHHhhCcCC-----CceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHH
Confidence 6677777776554 8899999999999999999887 689999999999999999877543 3688888888776
Q ss_pred CC-----C-CCCcccEEEecccc
Q 016981 220 QP-----F-PDGQFDLVWSMESG 236 (379)
Q Consensus 220 ~~-----~-~~~~fD~V~~~~~l 236 (379)
+. . ....+|.|++-..+
T Consensus 81 l~~~l~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 81 LDEYLKELNGINKVDGILFDLGV 103 (310)
T ss_dssp HHHHHHHTTTTS-EEEEEEE-S-
T ss_pred HHHHHHHccCCCccCEEEEcccc
Confidence 42 2 23467877765433
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.024 Score=52.52 Aligned_cols=107 Identities=20% Similarity=0.311 Sum_probs=66.5
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC--CCCC-CCcccEEEe
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QPFP-DGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~-~~~fD~V~~ 232 (379)
.+.+|||+|.|.|.-+..+-.-+ -..++.++.|+..-+.......... +........|+.. ++++ ...|++|+.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~-t~~td~r~s~vt~dRl~lp~ad~ytl~i~ 191 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS-TEKTDWRASDVTEDRLSLPAADLYTLAIV 191 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc-cccCCCCCCccchhccCCCccceeehhhh
Confidence 36789999999887665555444 2467778888866555544433222 1222233333322 2322 356777777
Q ss_pred ccccCCCCCH---HHHHHHHHHhcCCCCEEEEEecc
Q 016981 233 MESGEHMPDK---SKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 233 ~~~l~~~~~~---~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
.+-|-+..+. ...++.+..++.|||.|+|++..
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 6666555433 45788899999999999999843
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.046 Score=52.82 Aligned_cols=103 Identities=20% Similarity=0.243 Sum_probs=68.6
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc-CCC-C-CC-CCCcccEEE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGD-ALQ-Q-PF-PDGQFDLVW 231 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d-~~~-~-~~-~~~~fD~V~ 231 (379)
++.+||.+|||. |..+..+++..+. +++++|.++...+.+++.. +. ..+.+...+ ... + .+ ....+|+|+
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~~~~D~vl 259 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTGGRGPDVCI 259 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCCCCCCEEE
Confidence 478999999988 8888899988875 6999999999988887642 11 111111111 100 1 11 223689887
Q ss_pred eccc---------------cCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 232 SMES---------------GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 232 ~~~~---------------l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
-.-. +.-..+....+.++.+.|+|+|++++...
T Consensus 260 d~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 260 DAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred ECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 6421 11124556789999999999999988763
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.035 Score=51.94 Aligned_cols=100 Identities=17% Similarity=0.142 Sum_probs=79.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC-CCCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~V~~~~~l 236 (379)
..+|||.=+|||.=++..+...+. +|+.-|+||.+++.+++++..+.. .+...+..|+..+-. ....||+|= +
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~ID----i 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVID----I 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEe----c
Confidence 678999999999999888887754 899999999999999999988732 345555577665422 136788884 3
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.-+..+..++..+.+.++.||.|.++-
T Consensus 128 DPFGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 128 DPFGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CCCCCCchHHHHHHHHhhcCCEEEEEe
Confidence 345567889999999999999999975
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.037 Score=49.06 Aligned_cols=91 Identities=26% Similarity=0.328 Sum_probs=51.8
Q ss_pred HHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---HHHHcCCC-----CCeEEEEc
Q 016981 144 ETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANA---LAAARGLA-----DKVSFQVG 215 (379)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~---~~~~~~~~-----~~i~~~~~ 215 (379)
.+++..++.. ....+|||.-+|-|.-+..++.. |++|++++-||.+....+. +....... .+++++.+
T Consensus 64 ~l~kA~Glk~---~~~~~VLDaTaGLG~Da~vlA~~-G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 64 PLAKAVGLKP---GMRPSVLDATAGLGRDAFVLASL-GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp HHHHHTT-BT---TB---EEETT-TTSHHHHHHHHH-T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred HHHHHhCCCC---CCCCEEEECCCcchHHHHHHHcc-CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 3445556554 11249999999999999999864 8899999999987655443 33322111 36899999
Q ss_pred cCCC-CCCCCCcccEEEeccccCC
Q 016981 216 DALQ-QPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 216 d~~~-~~~~~~~fD~V~~~~~l~~ 238 (379)
|..+ +..++.+||+|+.-=++.+
T Consensus 140 d~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 140 DALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp -CCCHCCCHSS--SEEEE--S---
T ss_pred CHHHHHhhcCCCCCEEEECCCCCC
Confidence 9877 3556789999998766655
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.14 Score=51.04 Aligned_cols=105 Identities=22% Similarity=0.297 Sum_probs=75.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHcC-----CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC-----CCCccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFG-----AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-----PDGQFD 228 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~-----~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~~~~fD 228 (379)
..+|+|..||+|.+.....+..+ ..++|.|+++.....|+-+.--.|+..++....+|...-|. ..+.||
T Consensus 187 ~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D 266 (489)
T COG0286 187 RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFD 266 (489)
T ss_pred CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCcccee
Confidence 66999999999998777766552 56999999999999999988777764334555555444332 236799
Q ss_pred EEEeccccC---CC---------------------CCH-HHHHHHHHHhcCCCCEEEEEe
Q 016981 229 LVWSMESGE---HM---------------------PDK-SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 229 ~V~~~~~l~---~~---------------------~~~-~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+|+++--+. +. ... ..++..+...|+|||+..++.
T Consensus 267 ~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 267 FVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred EEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence 998764442 10 011 568999999999999766654
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.034 Score=48.54 Aligned_cols=83 Identities=13% Similarity=0.222 Sum_probs=56.8
Q ss_pred CCCCEEEEeCCcccHHHHHH-HHHcCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEccCCC-C-C---CCCCcccE
Q 016981 157 KRPKNVVDVGCGIGGSSRYL-AKKFGAKCQGITLSPVQAQRANALAAAR-GLADKVSFQVGDALQ-Q-P---FPDGQFDL 229 (379)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l-~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~-~-~---~~~~~fD~ 229 (379)
.+..++||||.|.-..=-.+ ...+|.+.+|.|+++..++.|+..+..+ ++...+++....-.+ + + -..+.||+
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred cCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 45789999998865422111 2334889999999999999999998876 555556655432211 1 1 12578999
Q ss_pred EEeccccCCC
Q 016981 230 VWSMESGEHM 239 (379)
Q Consensus 230 V~~~~~l~~~ 239 (379)
++|+--+|..
T Consensus 157 tlCNPPFh~s 166 (292)
T COG3129 157 TLCNPPFHDS 166 (292)
T ss_pred EecCCCcchh
Confidence 9999877643
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.1 Score=49.43 Aligned_cols=97 Identities=24% Similarity=0.264 Sum_probs=61.8
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
++.+||=.||| .|..+..+++..|+ +|+++|.++..++.+++. |...-+.....+..+.....+.+|+|+-.-
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~~g~~D~vid~~- 243 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GADKLVNPQNDDLDHYKAEKGYFDVSFEVS- 243 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCcEEecCCcccHHHHhccCCCCCEEEECC-
Confidence 37889988886 36677778877776 699999999988887652 321001111111111111123588887432
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.. ...+..+.+.|++||++++...
T Consensus 244 ----G~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 244 ----GH-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ----CC-HHHHHHHHHHhhcCCEEEEEcc
Confidence 12 3467888899999999998874
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.013 Score=52.86 Aligned_cols=106 Identities=12% Similarity=0.112 Sum_probs=65.1
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHH-------HHHH--HcCCCCCeEEEEccCCCCCC-CCC--
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRAN-------ALAA--ARGLADKVSFQVGDALQQPF-PDG-- 225 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~-------~~~~--~~~~~~~i~~~~~d~~~~~~-~~~-- 225 (379)
.+++|||+|||.|...+.+.......+...|.+...++.-. ..+. ......-......+..+.-+ ..+
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~~ 195 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTERT 195 (282)
T ss_pred cCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcccc
Confidence 38999999999999998888764478888888877763110 0000 00000001111110001110 113
Q ss_pred cccEEEeccccCCCCCHHHH-HHHHHHhcCCCCEEEEEe
Q 016981 226 QFDLVWSMESGEHMPDKSKF-VSELARVTAPAGTIIIVT 263 (379)
Q Consensus 226 ~fD~V~~~~~l~~~~~~~~~-l~~~~r~LkpgG~l~i~~ 263 (379)
.||+|.+..+++.......+ ......+++++|.++++.
T Consensus 196 ~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 196 HYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred chhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhh
Confidence 79999999999888776666 666777888899877754
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.087 Score=41.61 Aligned_cols=47 Identities=13% Similarity=0.074 Sum_probs=41.5
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 204 (379)
.+.+|+|||.+.|..+++++-+....|+++++++...+..+++++..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 38899999999999999999885568999999999999998877654
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.11 Score=44.12 Aligned_cols=105 Identities=18% Similarity=0.264 Sum_probs=74.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-------CCCCc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---G--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQ 226 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~ 226 (379)
+..|+|+|.-.|..+...|... | .+|+++|++-..+..+... . +++.|+.++..+.. ...+.
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 7899999999998877777643 4 6899999987765543322 2 58999999977642 22233
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCC
Q 016981 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDL 269 (379)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~ 269 (379)
--+.++-..-|+....-+.|+-..++|..|-++++.+...++.
T Consensus 144 ~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dl 186 (237)
T COG3510 144 PKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDL 186 (237)
T ss_pred CcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCC
Confidence 3444555666666555677777889999999999988655543
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.048 Score=49.42 Aligned_cols=105 Identities=18% Similarity=0.238 Sum_probs=77.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEccCCCC--CCCCCcccEEEe
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--L-ADKVSFQVGDALQQ--PFPDGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~--~~~~~~fD~V~~ 232 (379)
+++||-||.|-|.+.+..+++- -..+.-+|++...++..++.+...- . .+++.+..+|...+ ..+.++||+|+.
T Consensus 122 pkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~ 201 (337)
T KOG1562|consen 122 PKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIIT 201 (337)
T ss_pred CCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEE
Confidence 7899999999999988877753 3478899999999888888766531 1 25788888886554 244689999986
Q ss_pred ccccCCCCC----HHHHHHHHHHhcCCCCEEEEEe
Q 016981 233 MESGEHMPD----KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 233 ~~~l~~~~~----~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
-..=--.+. ...++.-+.+.||+||++++..
T Consensus 202 dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 202 DSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred ecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 322111111 1567777899999999999876
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.17 Score=48.16 Aligned_cols=97 Identities=22% Similarity=0.221 Sum_probs=68.2
Q ss_pred CCEEEEeCCcc-cHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC-C----C-CCCC-CcccE
Q 016981 159 PKNVVDVGCGI-GGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL-Q----Q-PFPD-GQFDL 229 (379)
Q Consensus 159 ~~~vLDiGcGt-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~-~----~-~~~~-~~fD~ 229 (379)
+.+|+=+|||. |.++..+++..| .+|+.+|.++.-++.|++.... ........ + . .... ..+|+
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~-------~~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA-------DVVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC-------eEeecCccccHHHHHHHHhCCCCCCE
Confidence 44999999996 888888888774 6899999999999999885421 11111111 1 0 1112 36999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCC
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 268 (379)
|+-.-. ....+..+.++++|||.+.+.......
T Consensus 242 vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 242 VIEAVG------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred EEECCC------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 985433 255899999999999999998866444
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.043 Score=49.73 Aligned_cols=77 Identities=18% Similarity=0.354 Sum_probs=49.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHcC---------CEEEEEeCCHHHHHHHHHHHHHc-----CCCCCeEEEEccCCCCCCCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFG---------AKCQGITLSPVQAQRANALAAAR-----GLADKVSFQVGDALQQPFPD 224 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~---------~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~~~~~ 224 (379)
+.+|+|+|.|+|.++..+++.+. .+++-||+|+.+.+..++++... ....++.+ ..+..+.|
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 47999999999999999887551 48999999999988888877542 12234555 23333333
Q ss_pred CcccEEEeccccCCCC
Q 016981 225 GQFDLVWSMESGEHMP 240 (379)
Q Consensus 225 ~~fD~V~~~~~l~~~~ 240 (379)
..-+|+++.++..+|
T Consensus 95 -~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 95 -FPGFIIANELFDALP 109 (252)
T ss_dssp -CCEEEEEESSGGGS-
T ss_pred -CCEEEEEeeehhcCc
Confidence 345566666665553
|
; PDB: 4F3N_A 1ZKD_B. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.053 Score=48.29 Aligned_cols=52 Identities=17% Similarity=0.341 Sum_probs=33.5
Q ss_pred EEEEccCCCC--CCCCCcccEEEecc--cc--C-C----C--C---C-HHHHHHHHHHhcCCCCEEEEE
Q 016981 211 SFQVGDALQQ--PFPDGQFDLVWSME--SG--E-H----M--P---D-KSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 211 ~~~~~d~~~~--~~~~~~fD~V~~~~--~l--~-~----~--~---~-~~~~l~~~~r~LkpgG~l~i~ 262 (379)
+++.+|..+. .++++++|+|++.= .+ . + + . + ....+.+++|+|||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 4566676553 46678888887651 11 0 0 0 0 1 157889999999999988763
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.1 Score=51.78 Aligned_cols=97 Identities=18% Similarity=0.283 Sum_probs=67.0
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-----------C--C--
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-----------Q--P-- 221 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-----------~--~-- 221 (379)
++.+|+=+|+|. |..+..+++..|+.|+++|.++..++.+++. | ..++..|..+ . +
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l----G----a~~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM----G----AEFLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEeccccccccccccceeecCHHHH
Confidence 478999999995 6777777887788999999999987776652 2 2233333211 0 0
Q ss_pred ------CC--CCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEE
Q 016981 222 ------FP--DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 222 ------~~--~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~ 262 (379)
+. -..+|+|+..-.+.--+.+.-+.++..+.+|||+.++-.
T Consensus 235 ~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 235 AAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 11 245999987665555455555788889999999987643
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.35 Score=45.28 Aligned_cols=93 Identities=18% Similarity=0.313 Sum_probs=63.8
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC------CCCCCcccEE
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~~fD~V 230 (379)
++.+||..|+| .|..+..+++..|.+|++++.++...+.+++ .+. .....+-... ....+.+|+|
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~----~~~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGA----DEVLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCC----CEEEcCCCcCHHHHHHHhcCCCceEE
Confidence 37889998876 4778888888888899999999998887754 232 1111111110 1234568988
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+.... ....+.++.+.|+++|.++....
T Consensus 237 id~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 237 FDFVG------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred EECCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence 74321 14578889999999999988754
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.33 Score=44.83 Aligned_cols=100 Identities=16% Similarity=0.199 Sum_probs=67.9
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc--CCCC------CCCCCcc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGD--ALQQ------PFPDGQF 227 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d--~~~~------~~~~~~f 227 (379)
.+.+||=+|+|. |..+...++.+| .+|+.+|+++.-++.|++ + |. ..+...... ...+ .+....+
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga-~~~~~~~~~~~~~~~~~~v~~~~g~~~~ 243 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GA-TVTDPSSHKSSPQELAELVEKALGKKQP 243 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CC-eEEeeccccccHHHHHHHHHhhccccCC
Confidence 489999999995 777777888774 589999999999999998 3 21 111111110 1110 1223458
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCC
Q 016981 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268 (379)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 268 (379)
|+.+-...+ +..++.....+|+||.+++..+....
T Consensus 244 d~~~dCsG~------~~~~~aai~a~r~gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 244 DVTFDCSGA------EVTIRAAIKATRSGGTVVLVGMGAEE 278 (354)
T ss_pred CeEEEccCc------hHHHHHHHHHhccCCEEEEeccCCCc
Confidence 888755433 34577778899999999998876543
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.025 Score=54.72 Aligned_cols=102 Identities=18% Similarity=0.195 Sum_probs=82.8
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC----CCCCCcccEEE
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-G-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVW 231 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~V~ 231 (379)
++.+|||.=|++|.-++..++.. + ..|++.|.++..++..+++.+.+++.+.++....|+..+ +-....||+|-
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 47899999999999998888877 3 479999999999999999998887766777777777553 22357899996
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
. .-+..+..+|+.+.+.++.||.|.++-
T Consensus 189 L----DPyGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 189 L----DPYGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred c----CCCCCccHHHHHHHHHhhcCCEEEEEe
Confidence 3 334456889999999999999999975
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.11 Score=47.86 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=47.3
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH
Q 016981 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA 203 (379)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~ 203 (379)
..+++.++.... .+++.|||.=||+|..+....+. +-+.+|+|++++..+.|++|+..
T Consensus 195 ~~L~erlI~~~S------~~GD~VLDPF~GSGTT~~AA~~l-gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASS------NPGDIVLDPFAGSFTTGAVAKAS-GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhC------CCCCEEEECCCCCcHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHh
Confidence 346666666543 24999999999999988877665 88999999999999999999854
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.15 Score=44.93 Aligned_cols=102 Identities=15% Similarity=0.201 Sum_probs=67.2
Q ss_pred CCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC---CCCCcccEE
Q 016981 156 TKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLV 230 (379)
Q Consensus 156 ~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V 230 (379)
.+++.+||-+|.++|....++.+-. ..-|++++.|+..-...-..+++. .|+--+.-|+.... ..-+..|+|
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArhP~KYRmlVgmVDvI 230 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARHPAKYRMLVGMVDVI 230 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeeccCCCchheeeeeeeEEEE
Confidence 3459999999999999988888866 357999999875433333222221 47777777775421 112356777
Q ss_pred EeccccCCCCCHH-HHHHHHHHhcCCCCEEEEEe
Q 016981 231 WSMESGEHMPDKS-KFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 231 ~~~~~l~~~~~~~-~~l~~~~r~LkpgG~l~i~~ 263 (379)
++- +- + +|.. -+.-++.-.||+||.++++-
T Consensus 231 FaD-va-q-pdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 231 FAD-VA-Q-PDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred ecc-CC-C-chhhhhhhhhhhhhhccCCeEEEEE
Confidence 642 11 1 3333 34456778899999999875
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.23 Score=46.65 Aligned_cols=60 Identities=18% Similarity=0.218 Sum_probs=45.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc---------CCEEEEEeCCHHHHHHHHHHHHHc
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF---------GAKCQGITLSPVQAQRANALAAAR 204 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~---------~~~v~gvD~s~~~~~~a~~~~~~~ 204 (379)
..+-++++.++.. .+..++|+|.|+|.++..+.+.. ..++.-|++|+...+.-+++++..
T Consensus 64 ~~~~~~wq~~g~p-----~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 64 EQFLQLWQELGRP-----APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHhcCC-----CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 3344444444433 26789999999999998887654 368999999999998888887654
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.025 Score=51.32 Aligned_cols=102 Identities=19% Similarity=0.179 Sum_probs=74.0
Q ss_pred CCEEEEeCCcccHHHH-HHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSR-YLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~-~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+..|+|+=.|-|.++. .+.......|+++|.+|..++..++.++.+++..+.....+|-... -+....|.|.. .
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~-~~~~~AdrVnL----G 269 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNP-KPRLRADRVNL----G 269 (351)
T ss_pred cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccccc-Cccccchheee----c
Confidence 6789999999999998 6666545689999999999999999999887766666677775443 34677888864 3
Q ss_pred CCCCHHHHHHHHHHhcCCCCE--EEEEecc
Q 016981 238 HMPDKSKFVSELARVTAPAGT--IIIVTWC 265 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~--l~i~~~~ 265 (379)
-+|.-++---.+.++|||.|- +=|.+..
T Consensus 270 LlPSse~~W~~A~k~Lk~eggsilHIHenV 299 (351)
T KOG1227|consen 270 LLPSSEQGWPTAIKALKPEGGSILHIHENV 299 (351)
T ss_pred cccccccchHHHHHHhhhcCCcEEEEeccc
Confidence 445545555556678888544 4444433
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.11 Score=48.84 Aligned_cols=42 Identities=38% Similarity=0.523 Sum_probs=36.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANAL 200 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~ 200 (379)
-..|+|+|.|.|.+++.+.-.+|..|.+||-|....+.|++.
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence 467999999999999999988899999999998777776653
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.57 Score=44.08 Aligned_cols=108 Identities=16% Similarity=0.129 Sum_probs=73.0
Q ss_pred CCCCEEEEeCCcccHHHHHHHHHc-CC----EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC---------C
Q 016981 157 KRPKNVVDVGCGIGGSSRYLAKKF-GA----KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---------F 222 (379)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~-~~----~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---------~ 222 (379)
.++.+|||+..-.|.=+..+.+.. .. .|++-|.++.-+........... .+++.+...|+...| .
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~p~~~~~~~~~~ 232 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLFPNIYLKDGNDK 232 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-CcceeeecccceeccccccccCchh
Confidence 459999999999999887777765 22 79999999988777777664432 235555555544332 1
Q ss_pred CCCcccEEEec------cccCCCCCH-----------------HHHHHHHHHhcCCCCEEEEEecc
Q 016981 223 PDGQFDLVWSM------ESGEHMPDK-----------------SKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 223 ~~~~fD~V~~~------~~l~~~~~~-----------------~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
....||-|++- .++.+.++. ..+|.+..++||+||+++.++-+
T Consensus 233 ~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS 298 (375)
T ss_pred hhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 23468988752 122222221 35788899999999999998743
|
|
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.94 Score=41.62 Aligned_cols=173 Identities=13% Similarity=0.034 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCC----
Q 016981 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGL---- 206 (379)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~---- 206 (379)
+..+....+..++...+ ....|+.+|||.-.+...|...+ ...++=||.++........+. ....
T Consensus 70 R~~aI~~~v~~Fl~~~~-------~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~-~~~~s~~l 141 (335)
T KOG2918|consen 70 RTMAIRHAVRAFLEQTD-------GKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKR-KPELSSIL 141 (335)
T ss_pred HHHHHHHHHHHHHHhcC-------CceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcc-cCchhhhh
Confidence 33444555666666522 26789999999998888887765 246777777765554441110 0000
Q ss_pred -----------------CCCeEEEEccCCCCC----------CCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCC
Q 016981 207 -----------------ADKVSFQVGDALQQP----------FPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAG 257 (379)
Q Consensus 207 -----------------~~~i~~~~~d~~~~~----------~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG 257 (379)
.++....-+|+.++. ...+-.-++++-.+|.+++.- ..+++.+......++
T Consensus 142 ~~~~~eD~~~~s~~~l~s~~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~ 221 (335)
T KOG2918|consen 142 LGLHDEDVVDLSGTDLHSGRYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAH 221 (335)
T ss_pred hccccccccccCcceeccCceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCccc
Confidence 012222333333211 011223344445556666422 355666666555444
Q ss_pred EEEEEeccCCCCCCCccccchHHHHHHHH-HhhccCCCCCCCHHHHHHHHHhCCCceeEEEecC
Q 016981 258 TIIIVTWCHRDLAPSEESLQPWEQELLKK-ICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWS 320 (379)
Q Consensus 258 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 320 (379)
. ++.+...+ .+.+...+...+.. ..+..+...+.+.+..++-+.++||+.+.+.|+.
T Consensus 222 f-v~YEQi~~-----~D~Fg~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm~ 279 (335)
T KOG2918|consen 222 F-VNYEQINP-----NDRFGKVMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDMN 279 (335)
T ss_pred E-EEEeccCC-----CChHHHHHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhHH
Confidence 4 44443221 12222222222221 1222233356799999999999999999886653
|
|
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.61 Score=43.27 Aligned_cols=174 Identities=17% Similarity=0.141 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC--CCCeEE
Q 016981 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL--ADKVSF 212 (379)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~i~~ 212 (379)
.....+.+++.+...-... -..|+-+|||--.-+.-+-...+.+|+-+|. |+.++.=++.++..+. +...++
T Consensus 74 ~a~Rtr~fD~~~~~~~~~g-----~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~ 147 (297)
T COG3315 74 LAARTRYFDDFVRAALDAG-----IRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRL 147 (297)
T ss_pred HHHHHHHHHHHHHHHHHhc-----ccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEE
Confidence 4555666777666543221 4789999999654333332221467888888 5566666666666542 236889
Q ss_pred EEccCCCCC---------CCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHH
Q 016981 213 QVGDALQQP---------FPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ 281 (379)
Q Consensus 213 ~~~d~~~~~---------~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 281 (379)
+..|+.+.. |....--++++-+++.+++.. .++|+.|...+.||-.++.............. .....
T Consensus 148 Va~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~--~~~~~ 225 (297)
T COG3315 148 VAVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLR--RPAAR 225 (297)
T ss_pred EeccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhccc--chhhh
Confidence 999998432 234455678888999999644 78999999999888887775431111100000 00000
Q ss_pred HHHHHHhhccC-CC-CCCCHHHHHHHHHhCCCceeEE
Q 016981 282 ELLKKICDAYY-LP-AWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 282 ~~~~~~~~~~~-~~-~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
........... .. ......++..+|.+.||..+..
T Consensus 226 ~~~~~~~~~~~e~~~~~~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 226 KTMRGEDLDRGELVYFGDDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred hhccccccccccceeccCCHHHHHHHHHhcCEEEEec
Confidence 00000000001 11 1235899999999999987654
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.13 Score=45.32 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Q 016981 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANA 199 (379)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~ 199 (379)
..++++++.... +++..|||.=||+|..+.+..+. +-+.+|+|+++...+.|++
T Consensus 178 ~~l~~~lI~~~t------~~gdiVlDpF~GSGTT~~aa~~l-~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKAST------NPGDIVLDPFAGSGTTAVAAEEL-GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHHS-------TT-EEEETT-TTTHHHHHHHHT-T-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhhh------ccceeeehhhhccChHHHHHHHc-CCeEEEEeCCHHHHHHhcC
Confidence 346666666543 24899999999999988887765 8899999999999998864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.17 Score=40.29 Aligned_cols=86 Identities=22% Similarity=0.191 Sum_probs=60.6
Q ss_pred cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-----C-CCCCcccEEEeccccCCCCC
Q 016981 168 GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----P-FPDGQFDLVWSMESGEHMPD 241 (379)
Q Consensus 168 GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~~~fD~V~~~~~l~~~~~ 241 (379)
|.|..+..+++..|.+|+++|.++.-++.+++. |. ..+...+-.+. . .+...+|+|+-.-.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga---~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------ 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GA---DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------ 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TE---SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS------
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----cc---cccccccccccccccccccccccceEEEEecC------
Confidence 568899999998899999999999988888762 21 11222211111 1 23357999975422
Q ss_pred HHHHHHHHHHhcCCCCEEEEEeccC
Q 016981 242 KSKFVSELARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 242 ~~~~l~~~~r~LkpgG~l~i~~~~~ 266 (379)
....++....+|+|||++++.....
T Consensus 68 ~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred cHHHHHHHHHHhccCCEEEEEEccC
Confidence 2678999999999999999988654
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.49 Score=36.91 Aligned_cols=84 Identities=24% Similarity=0.264 Sum_probs=56.1
Q ss_pred CcccHHHHHHHHHc--C-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----CCCCcccEEEeccccCCC
Q 016981 167 CGIGGSSRYLAKKF--G-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWSMESGEHM 239 (379)
Q Consensus 167 cGtG~~~~~l~~~~--~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~~~~l~~~ 239 (379)
||.|.++..+++.+ + ..|+.+|.++...+.+++ ..+.++.+|..+.. ..-...|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~--------~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~----- 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE--------EGVEVIYGDATDPEVLERAGIEKADAVVILT----- 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH--------TTSEEEES-TTSHHHHHHTTGGCESEEEEES-----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh--------cccccccccchhhhHHhhcCccccCEEEEcc-----
Confidence 56778888887766 4 489999999999887765 24778999987742 2235677777642
Q ss_pred CCH--HHHHHHHHHhcCCCCEEEEEe
Q 016981 240 PDK--SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 240 ~~~--~~~l~~~~r~LkpgG~l~i~~ 263 (379)
++. ...+....+-+.|...++...
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIARV 96 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEE
Confidence 233 234445667778888877654
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.05 Score=47.43 Aligned_cols=94 Identities=22% Similarity=0.300 Sum_probs=66.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-C------C---EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-------
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-G------A---KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------- 221 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~------~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------- 221 (379)
-.+++|+....|.|+..|.+++ . . .+++||+.+-+ . + +.+.-+++|++...
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-P----------I-~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-P----------I-EGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-c----------c-CceEEeecccCCHhHHHHHHH
Confidence 4689999999999999998876 2 1 29999996522 1 1 45777889988742
Q ss_pred -CCCCcccEEEecccc-----CCCCCH------HHHHHHHHHhcCCCCEEEEEec
Q 016981 222 -FPDGQFDLVWSMESG-----EHMPDK------SKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 222 -~~~~~fD~V~~~~~l-----~~~~~~------~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|..++.|+|+|-+.- |.+.+. ..+|.-...+|||||.++---+
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 556689999986643 222221 2455566789999999876544
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.032 Score=42.72 Aligned_cols=32 Identities=31% Similarity=0.445 Sum_probs=26.9
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLS 190 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s 190 (379)
+....+|+|||+|.+...|... |..-.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E-Gy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE-GYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC-CCCccccccc
Confidence 4678999999999999888877 6777899873
|
; GO: 0008168 methyltransferase activity |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.23 Score=44.27 Aligned_cols=58 Identities=17% Similarity=0.123 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 204 (379)
.+++.++.... .++..|||.=||+|..+....+. +.+++|+|+++...+.+.+++...
T Consensus 151 ~l~~~~i~~~s------~~g~~vlDpf~Gsgtt~~aa~~~-~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLIESFT------HPNAIVLDPFAGSGSTCVAALQS-GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHhC------CCCCEEEeCCCCCCHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHHHH
Confidence 34555555432 24899999999999988877765 889999999999999999998754
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.81 Score=43.10 Aligned_cols=90 Identities=18% Similarity=0.147 Sum_probs=60.8
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
++.+||=.|+| .|..+..+++..|++|++++.++.-.+.+++ .|.. .. .|..+. ..+.+|+++.....
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~----~Ga~----~v-i~~~~~--~~~~~d~~i~~~~~ 233 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA----LGAA----SA-GGAYDT--PPEPLDAAILFAPA 233 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----hCCc----ee-cccccc--CcccceEEEECCCc
Confidence 48899999975 4556677787778899999999888777765 3321 11 111111 12457876643321
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
...+....+.|++||++++...
T Consensus 234 ------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 ------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ------HHHHHHHHHhhCCCcEEEEEec
Confidence 2468888999999999988775
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.17 Score=45.57 Aligned_cols=92 Identities=24% Similarity=0.244 Sum_probs=61.5
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-------CCCCcccE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~fD~ 229 (379)
++.+||-.|+|+ |..+..+++..|.+|++++.++...+.+++. +. ..+. +..... ...+.+|+
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~---~~~~--~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GA---DHVI--DYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CC---ceec--cCCcCCHHHHHHHhcCCCCCE
Confidence 488999999985 6677777777788999999998777766542 21 1111 111111 12356999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|+.... . ...+..+.+.|+++|.++....
T Consensus 205 vi~~~~-----~-~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 205 VIDAVG-----G-PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred EEECCC-----C-HHHHHHHHHhcccCCEEEEEcc
Confidence 985422 1 1467778899999999988764
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.87 Score=38.36 Aligned_cols=130 Identities=18% Similarity=0.138 Sum_probs=78.5
Q ss_pred eCCcccHHHHHHHHHc--CCEEEEEeC--CHHHHHH---HHHHHHHcCCCCCeE-EEEccCCCCC----CCCCcccEEEe
Q 016981 165 VGCGIGGSSRYLAKKF--GAKCQGITL--SPVQAQR---ANALAAARGLADKVS-FQVGDALQQP----FPDGQFDLVWS 232 (379)
Q Consensus 165 iGcGtG~~~~~l~~~~--~~~v~gvD~--s~~~~~~---a~~~~~~~~~~~~i~-~~~~d~~~~~----~~~~~fD~V~~ 232 (379)
||=|.=.++..|++.. +..++++-+ .....+. +..+++...- .++. ....|+.++. ...+.||.|+-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~-~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE-LGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh-cCCccccCCCCCcccccccccCCcCCEEEE
Confidence 5666666788888876 345666544 3333332 2233333211 1222 3456777763 25688999997
Q ss_pred ccccCCCC----C-----------HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016981 233 MESGEHMP----D-----------KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (379)
Q Consensus 233 ~~~l~~~~----~-----------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (379)
++- |.. + ...+++.+.++|+++|.+.|+-..... +
T Consensus 82 NFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p-------y--------------------- 131 (166)
T PF10354_consen 82 NFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP-------Y--------------------- 131 (166)
T ss_pred eCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC-------C---------------------
Confidence 653 333 1 146788899999999999987532110 1
Q ss_pred CHHHHHHHHHhCCCceeEEEecCCCccc
Q 016981 298 STADYVKLLQSLSLEDIKAEDWSQNVAP 325 (379)
Q Consensus 298 ~~~~~~~~l~~aGF~~v~~~~~~~~~~~ 325 (379)
+.=.+.++-+++||..++...+.....|
T Consensus 132 ~~W~i~~lA~~~gl~l~~~~~F~~~~yp 159 (166)
T PF10354_consen 132 DSWNIEELAAEAGLVLVRKVPFDPSDYP 159 (166)
T ss_pred ccccHHHHHHhcCCEEEEEecCCHHHCC
Confidence 1113557788899999988877655444
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.013 Score=45.14 Aligned_cols=82 Identities=13% Similarity=0.267 Sum_probs=42.5
Q ss_pred cccEEEeccccCCCC----C--HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCH
Q 016981 226 QFDLVWSMESGEHMP----D--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCST 299 (379)
Q Consensus 226 ~fD~V~~~~~l~~~~----~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (379)
.||+|+|..+.-++. | ...+++.+++.|+|||.+++---..... .......+.....+.. .. +.+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY-~~~~~~~~~~~~n~~~----i~----lrP 71 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSY-KKAKRLSEEIRENYKS----IK----LRP 71 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHH-HTTTTS-HHHHHHHHH------------G
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHH-HHHhhhhHHHHhHHhc----eE----ECh
Confidence 489999998876552 2 3689999999999999998853110000 0001111111111211 11 246
Q ss_pred HHHHHHHHh--CCCceeEE
Q 016981 300 ADYVKLLQS--LSLEDIKA 316 (379)
Q Consensus 300 ~~~~~~l~~--aGF~~v~~ 316 (379)
+.+...|.+ .||..++.
T Consensus 72 ~~F~~~L~~~evGF~~~e~ 90 (110)
T PF06859_consen 72 DQFEDYLLEPEVGFSSVEE 90 (110)
T ss_dssp GGHHHHHTSTTT---EEEE
T ss_pred HHHHHHHHhcccceEEEEE
Confidence 678888877 59987764
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.051 Score=43.39 Aligned_cols=76 Identities=24% Similarity=0.337 Sum_probs=49.3
Q ss_pred CeEEEEccCCCC-CCCCCcccEEEeccccCCCCCH----HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHH
Q 016981 209 KVSFQVGDALQQ-PFPDGQFDLVWSMESGEHMPDK----SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQEL 283 (379)
Q Consensus 209 ~i~~~~~d~~~~-~~~~~~fD~V~~~~~l~~~~~~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 283 (379)
++.+..+|+.+. +--...||+|+.-. +..-.++ ..++++++++++|||.+.-..
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys-------------------- 90 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLATYS-------------------- 90 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES---------------------
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEEee--------------------
Confidence 356667776542 22237799998653 3333444 789999999999999875522
Q ss_pred HHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEec
Q 016981 284 LKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319 (379)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 319 (379)
....+++.|.++||++.....+
T Consensus 91 --------------~a~~Vr~~L~~aGF~v~~~~g~ 112 (124)
T PF05430_consen 91 --------------SAGAVRRALQQAGFEVEKVPGF 112 (124)
T ss_dssp ---------------BHHHHHHHHHCTEEEEEEE-S
T ss_pred --------------chHHHHHHHHHcCCEEEEcCCC
Confidence 2446889999999998777654
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.62 Score=45.25 Aligned_cols=101 Identities=15% Similarity=0.138 Sum_probs=65.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
.++.+++..++. .++++|+=+|+|. |......++..|++|+.+|.++.-...|+. .| .... +..+
T Consensus 188 ~~~~i~r~t~~~----l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~----~G----~~~~--~~~e 253 (413)
T cd00401 188 LIDGIKRATDVM----IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM----EG----YEVM--TMEE 253 (413)
T ss_pred hHHHHHHhcCCC----CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh----cC----CEEc--cHHH
Confidence 456666654442 2489999999996 666666666668899999999887776654 22 2211 1111
Q ss_pred CCCCCCcccEEEeccccCCCCCHHHHHHH-HHHhcCCCCEEEEEec
Q 016981 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSE-LARVTAPAGTIIIVTW 264 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~-~~r~LkpgG~l~i~~~ 264 (379)
. . ..+|+|+..- .. ..++.. ..+.+|+||.++....
T Consensus 254 ~-v--~~aDVVI~at-----G~-~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 254 A-V--KEGDIFVTTT-----GN-KDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred H-H--cCCCEEEECC-----CC-HHHHHHHHHhcCCCCcEEEEeCC
Confidence 1 1 3479988642 22 345554 4899999999988763
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.55 Score=44.69 Aligned_cols=93 Identities=19% Similarity=0.271 Sum_probs=60.7
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----CCCCcccE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITL---SPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~---s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~ 229 (379)
++.+||=+|+|. |.++..+++..|++|++++. ++.-.+.+++ .|. .++ +..+.. ...+.+|+
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~Ga----~~v--~~~~~~~~~~~~~~~~d~ 241 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LGA----TYV--NSSKTPVAEVKLVGEFDL 241 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cCC----EEe--cCCccchhhhhhcCCCCE
Confidence 378999999874 66778888877889999986 5666666554 232 221 111111 01245888
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccC
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 266 (379)
|+-.-. . ...+.+..+.|++||.+++.....
T Consensus 242 vid~~g-----~-~~~~~~~~~~l~~~G~~v~~G~~~ 272 (355)
T cd08230 242 IIEATG-----V-PPLAFEALPALAPNGVVILFGVPG 272 (355)
T ss_pred EEECcC-----C-HHHHHHHHHHccCCcEEEEEecCC
Confidence 875321 1 346788899999999998876543
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.49 Score=44.54 Aligned_cols=93 Identities=25% Similarity=0.312 Sum_probs=60.4
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc---CCCCCCCCCcccEEEe
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGD---ALQQPFPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~~~~fD~V~~ 232 (379)
++.+||-.|||. |..+..+++..|. .+++++.++...+.+++. +. + .++..+ ........+.+|+|+.
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~-~--~vi~~~~~~~~~~~~~~~~vd~vld 237 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GA-D--ETVNLARDPLAAYAADKGDFDVVFE 237 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CC-C--EEEcCCchhhhhhhccCCCccEEEE
Confidence 378899988875 6677778887777 799999998887765542 22 1 111111 1111111235899985
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.... ...++++.+.|+++|+++...
T Consensus 238 ~~g~------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 238 ASGA------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred CCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 4321 346788899999999988765
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.22 Score=45.78 Aligned_cols=67 Identities=21% Similarity=0.071 Sum_probs=49.4
Q ss_pred EEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC--CCcccEEEecc
Q 016981 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP--DGQFDLVWSME 234 (379)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fD~V~~~~ 234 (379)
+|+|+-||.|.+...+.......+.++|+++.+++..+.++. +. +..+|+.++... ...+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~------~~-~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP------NK-LIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC------CC-CccCccccCchhhcCCCCCEEEeCC
Confidence 699999999999888877633357889999999998887652 12 566777766321 35699998654
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.055 Score=50.05 Aligned_cols=74 Identities=20% Similarity=0.176 Sum_probs=58.3
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHH-------HHHHHHHHcCCC-CCeEEEEccCCCCCCC-CCccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQ-------RANALAAARGLA-DKVSFQVGDALQQPFP-DGQFD 228 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~-------~a~~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~fD 228 (379)
+|+-|+|-=.|||.+....+. +|+-|+|.||+-.++. ..+.++++.|.. .-+.+..+|...-|+. ...||
T Consensus 208 pGdivyDPFVGTGslLvsaa~-FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fD 286 (421)
T KOG2671|consen 208 PGDIVYDPFVGTGSLLVSAAH-FGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFD 286 (421)
T ss_pred CCCEEecCccccCceeeehhh-hcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcceee
Confidence 499999999999998887776 4999999999998887 345677777743 3467888898876643 45799
Q ss_pred EEEe
Q 016981 229 LVWS 232 (379)
Q Consensus 229 ~V~~ 232 (379)
.|+|
T Consensus 287 aIvc 290 (421)
T KOG2671|consen 287 AIVC 290 (421)
T ss_pred EEEe
Confidence 9987
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=93.21 E-value=2.6 Score=40.52 Aligned_cols=101 Identities=23% Similarity=0.291 Sum_probs=60.0
Q ss_pred CCCEEEEeCCcccH----HHHHHHHHcC----CEEEEEeC----CHHHHHHHHHHHH----HcCCCCCeEEEEc---cCC
Q 016981 158 RPKNVVDVGCGIGG----SSRYLAKKFG----AKCQGITL----SPVQAQRANALAA----ARGLADKVSFQVG---DAL 218 (379)
Q Consensus 158 ~~~~vLDiGcGtG~----~~~~l~~~~~----~~v~gvD~----s~~~~~~a~~~~~----~~~~~~~i~~~~~---d~~ 218 (379)
+..+|+|+|.|.|. +...|+.+-+ .++|||+. +...++.+.+++. ..|++ .+|... +.+
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~--fef~~v~~~~~e 187 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP--FEFHPVVVESLE 187 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc--EEEEecccCchh
Confidence 36799999999996 3444555432 37999999 7778877776644 34553 455442 233
Q ss_pred CC-----CCCCCcccEEEeccccCCCCC-------H-HHHHHHHHHhcCCCCEEEE
Q 016981 219 QQ-----PFPDGQFDLVWSMESGEHMPD-------K-SKFVSELARVTAPAGTIII 261 (379)
Q Consensus 219 ~~-----~~~~~~fD~V~~~~~l~~~~~-------~-~~~l~~~~r~LkpgG~l~i 261 (379)
++ ...++..=+|-+...++|+.+ + ..+| ...+.|+|.-.+++
T Consensus 188 ~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L-~~ir~L~P~vvv~~ 242 (374)
T PF03514_consen 188 DLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFL-RVIRSLNPKVVVLV 242 (374)
T ss_pred hCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHH-HHHHhcCCCEEEEE
Confidence 32 122333334445566688852 2 3355 44557899955444
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=93.19 E-value=1.4 Score=38.39 Aligned_cols=99 Identities=20% Similarity=0.215 Sum_probs=62.8
Q ss_pred CCEEEEeCCccc----HHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC-CCCCCCCcccEEEe
Q 016981 159 PKNVVDVGCGIG----GSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL-QQPFPDGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG----~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~fD~V~~ 232 (379)
.+.++++.|+.| .++...|.+. |+++++|-+++..+...++.+...++.+.++|+.++.. ++-..-...|+++.
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~vV 121 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVVV 121 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEEE
Confidence 678899866543 2334444444 88999999998888888888887777666799998853 32111245888876
Q ss_pred ccccCCCCCHHHHHHHHHHh--cCCCCEEEEEe
Q 016981 233 MESGEHMPDKSKFVSELARV--TAPAGTIIIVT 263 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~--LkpgG~l~i~~ 263 (379)
-.-. +.+.+++.+. +.|.|-+++..
T Consensus 122 Dc~~------~d~~~~vl~~~~~~~~GaVVV~~ 148 (218)
T PF07279_consen 122 DCKR------EDFAARVLRAAKLSPRGAVVVCY 148 (218)
T ss_pred eCCc------hhHHHHHHHHhccCCCceEEEEe
Confidence 4332 2233334443 44567766654
|
The function of this family is unknown. |
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.63 Score=47.25 Aligned_cols=98 Identities=15% Similarity=0.092 Sum_probs=67.9
Q ss_pred CEEEEeCCcccHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHH-HHcCC-------CCCeEEEEccCCCCCCC---
Q 016981 160 KNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALA-AARGL-------ADKVSFQVGDALQQPFP--- 223 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~-~~~~~-------~~~i~~~~~d~~~~~~~--- 223 (379)
..|+-+|+|-|-+.....+.. ..+|++|+-++........+. ....+ ...++++..|+..+..+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 468999999998865544432 357999999976554444443 22233 23589999999887422
Q ss_pred --------CCcccEEEeccccCCCCCH---HHHHHHHHHhcCC----CCE
Q 016981 224 --------DGQFDLVWSMESGEHMPDK---SKFVSELARVTAP----AGT 258 (379)
Q Consensus 224 --------~~~fD~V~~~~~l~~~~~~---~~~l~~~~r~Lkp----gG~ 258 (379)
-+++|+|| +..|..+.|- .+.|..+.+.||+ +|.
T Consensus 782 ~s~~~P~~~gKaDIVV-SELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIV-SELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceeh-HhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 13699997 4667777554 6899999999987 775
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.84 E-value=1 Score=42.68 Aligned_cols=92 Identities=16% Similarity=0.159 Sum_probs=58.9
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHH-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKK-F-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~ 234 (379)
++.+||=+|||. |.++..++++ . +.+|+++|.++.-++.+++ + + .. ... + ++. ....+|+|+-.-
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~---~---~~-~~~-~--~~~-~~~g~d~viD~~ 230 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A---D---ET-YLI-D--DIP-EDLAVDHAFECV 230 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c---C---ce-eeh-h--hhh-hccCCcEEEECC
Confidence 488999999874 5566666765 3 4689999999988877764 1 1 11 111 1 111 112488887422
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.. ......+....++|++||++++...
T Consensus 231 --G~-~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 231 --GG-RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred --CC-CccHHHHHHHHHhCcCCcEEEEEee
Confidence 11 0124578889999999999998775
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.41 Score=43.96 Aligned_cols=102 Identities=19% Similarity=0.177 Sum_probs=75.2
Q ss_pred CCCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 157 KRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 157 ~~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
-++.+|.=||.|. |..+.-++-..|+.|+.+|+|..-+......+. .++...-.+...+...-...|+|+..-.
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVL 240 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVL 240 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEE
Confidence 3467888898885 667777777669999999999988877666552 3455555554443222356899997766
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.--..|.-+.+++.+.+|||+.++=.-
T Consensus 241 IpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 241 IPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred ecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 6666788889999999999999877544
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.42 Score=46.29 Aligned_cols=108 Identities=13% Similarity=0.098 Sum_probs=67.8
Q ss_pred CCCEEEEeCCcccH--HHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC--CCCCC-CCcccEEE
Q 016981 158 RPKNVVDVGCGIGG--SSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL--QQPFP-DGQFDLVW 231 (379)
Q Consensus 158 ~~~~vLDiGcGtG~--~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~--~~~~~-~~~fD~V~ 231 (379)
.++.++|+|.|.|. ++.....+. ...++.||.|..|............-...+.....-+. .+|.. ...||+|+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 46788898877654 444444332 45799999999999998877654100001111110111 12433 35599999
Q ss_pred eccccCCCCCH---HHHHHH-HHHhcCCCCEEEEEecc
Q 016981 232 SMESGEHMPDK---SKFVSE-LARVTAPAGTIIIVTWC 265 (379)
Q Consensus 232 ~~~~l~~~~~~---~~~l~~-~~r~LkpgG~l~i~~~~ 265 (379)
+.+.++++.+. ..+.++ ..+..++||.+++.+-.
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g 317 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKG 317 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecC
Confidence 99999999765 233333 45678899999998843
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.2 Score=46.10 Aligned_cols=107 Identities=19% Similarity=0.237 Sum_probs=71.5
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc---------------------CCEEEEEeCCHH--HHHHHHHHHHHc----------
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF---------------------GAKCQGITLSPV--QAQRANALAAAR---------- 204 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---------------------~~~v~gvD~s~~--~~~~a~~~~~~~---------- 204 (379)
+..+||-||.|.|.=...++..+ ...++.||+.+- .++.....+...
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 45799999999987554444333 037999998763 333333332222
Q ss_pred ---CC-C--CCeEEEEccCCCCCCC-------CCcccEEEeccccCCC-----CCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 205 ---GL-A--DKVSFQVGDALQQPFP-------DGQFDLVWSMESGEHM-----PDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 205 ---~~-~--~~i~~~~~d~~~~~~~-------~~~fD~V~~~~~l~~~-----~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.. + -++.|.+.|+..+..+ ....|+|...+++.-+ ....++|..+-..++||-.|+|+|-
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 00 1 2578999998776432 1357888877776433 4457899999999999999999983
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.84 Score=42.53 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=57.4
Q ss_pred CCEEEEeCCc-ccHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 159 PKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcG-tG~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
+.+||=+||| .|.++..+++..|++ |+++|.++..++.|.+. . + .|..+. ....+|+|+-.-
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~--i~~~~~--~~~g~Dvvid~~-- 208 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------V--LDPEKD--PRRDYRAIYDAS-- 208 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------c--cChhhc--cCCCCCEEEECC--
Confidence 6778888876 477788888877776 66789888776655431 0 1 111111 124589887432
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
. . ...+..+.+.|++||++++....
T Consensus 209 G---~-~~~~~~~~~~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 209 G---D-PSLIDTLVRRLAKGGEIVLAGFY 233 (308)
T ss_pred C---C-HHHHHHHHHhhhcCcEEEEEeec
Confidence 1 1 34678889999999999987753
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.97 Score=43.32 Aligned_cols=94 Identities=19% Similarity=0.174 Sum_probs=60.4
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-----CCCCCcccEE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~fD~V 230 (379)
++.+||=.|+|. |..+..+++..|+ +|+++|.++..++.+++ .|.. .++..+-.+. ....+.+|+|
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~i~~~~~~g~d~v 263 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGAT---ATVNAGDPNAVEQVRELTGGGVDYA 263 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCc---eEeCCCchhHHHHHHHHhCCCCCEE
Confidence 378888898763 6667777877777 69999999998888765 2321 1111111110 0112358888
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+-.- .. ...+....+.|++||++++...
T Consensus 264 id~~--G~----~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 264 FEMA--GS----VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred EECC--CC----hHHHHHHHHHHhcCCEEEEEcc
Confidence 7431 11 3567788899999999988764
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.74 E-value=2.8 Score=39.82 Aligned_cols=97 Identities=13% Similarity=0.129 Sum_probs=62.4
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-cCCC-C-CCCCCcccEEEe
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DALQ-Q-PFPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~~fD~V~~ 232 (379)
++.+||=.|+ |.|..+..+++..|.+|++++.++...+.+++.+ |...-+..... +..+ . ....+.+|+|+-
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~gvD~v~d 234 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKL---GFDEAFNYKEEPDLDAALKRYFPEGIDIYFD 234 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhc---CCCEEEECCCcccHHHHHHHHCCCCcEEEEE
Confidence 4889999987 4688888899888999999999988777665322 32111111100 1111 0 011245888874
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.- . ...+..+.+.|++||++++...
T Consensus 235 ~v-----G--~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 235 NV-----G--GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred CC-----C--HHHHHHHHHHhccCCEEEEECc
Confidence 32 1 2467888999999999988764
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.61 E-value=1.8 Score=39.62 Aligned_cols=96 Identities=18% Similarity=0.160 Sum_probs=59.8
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-C-C-CCCCcccEEEe
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q-P-FPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~-~~~~~fD~V~~ 232 (379)
++.+||=+|+| .|..+..+++..|.+ |+++|.++.-++.+++. |.. ..+...+... . . .....+|+|+-
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~--~~i~~~~~~~~~~~~~~~~g~d~vid 193 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GAT--ALAEPEVLAERQGGLQNGRGVDVALE 193 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCc--EecCchhhHHHHHHHhCCCCCCEEEE
Confidence 37899999876 356667777777765 99999998877776652 221 1010001000 0 0 11235888874
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
.- .. ...++.+.+.|+|+|++++....
T Consensus 194 ~~-----G~-~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 194 FS-----GA-TAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred CC-----CC-hHHHHHHHHHhcCCCEEEEeccC
Confidence 21 11 45688889999999999987743
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=91.31 E-value=1.5 Score=41.83 Aligned_cols=97 Identities=21% Similarity=0.179 Sum_probs=60.5
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-C--CCCCCcccEEEe
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q--PFPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~--~~~~~~fD~V~~ 232 (379)
++.+||=.|+|. |..+..+++..|. +|+++|.++...+.+++ .|...-+.....+..+ + ......+|+|+-
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid 251 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGFGADVVID 251 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCCCCCEEEE
Confidence 488999998763 6667778887777 59999999988888754 2321001111111100 0 012235898874
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.- .. ...+....+.|++||++++...
T Consensus 252 ~~-----g~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 252 AV-----GR-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CC-----CC-HHHHHHHHHHhccCCEEEEECC
Confidence 21 12 3467778899999999998764
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.5 Score=43.60 Aligned_cols=54 Identities=24% Similarity=0.369 Sum_probs=37.7
Q ss_pred CeEEEEccCCCC--CCCCCcccEEEec--ccc--C---CCCC---------HHHHHHHHHHhcCCCCEEEEE
Q 016981 209 KVSFQVGDALQQ--PFPDGQFDLVWSM--ESG--E---HMPD---------KSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 209 ~i~~~~~d~~~~--~~~~~~fD~V~~~--~~l--~---~~~~---------~~~~l~~~~r~LkpgG~l~i~ 262 (379)
+..++++|..+. .+++++||+|++. +.+ . .... ....+.++.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 456788887764 4667899999984 211 0 0000 146889999999999999985
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=91.13 E-value=1.2 Score=42.00 Aligned_cols=97 Identities=22% Similarity=0.268 Sum_probs=59.4
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C-CCCCcccEEEec
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-FPDGQFDLVWSM 233 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~~~~fD~V~~~ 233 (379)
++.+||=+|+| .|..+..+++..|++ |+++|.++...+.+++. |...-+.....+.... . .....+|+|+-.
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~ 238 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GADFVINSGQDDVQEIRELTSGAGADVAIEC 238 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEcCCcchHHHHHHHhCCCCCCEEEEC
Confidence 38899988875 355667777777777 99999999887777542 3210011110110011 1 122368988743
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.. . ...+....+.|+++|++++...
T Consensus 239 ~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 239 SG-----N-TAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CC-----C-HHHHHHHHHHhhcCCEEEEEcC
Confidence 11 1 3456777899999999988764
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=91.03 E-value=2.1 Score=40.04 Aligned_cols=96 Identities=15% Similarity=0.136 Sum_probs=61.1
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-cCCC-C-CCCCCcccEEEe
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DALQ-Q-PFPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~~fD~V~~ 232 (379)
++.+||=.|. |.|..+..+++..|.+|++++.++...+.+++ .|...-+..... +... . ....+.+|+|+-
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d 213 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKASPDGYDCYFD 213 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHhCCCCeEEEEE
Confidence 3889998884 57888888998888899999999887777754 232100111110 1111 0 111245888874
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
. +. ...+....++|++||+++....
T Consensus 214 ~-----~G--~~~~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 214 N-----VG--GEFSNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred C-----CC--HHHHHHHHHHhCcCcEEEEecc
Confidence 2 11 2346888999999999997653
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=90.74 E-value=1.2 Score=42.37 Aligned_cols=125 Identities=15% Similarity=0.149 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHH-------HHHcC
Q 016981 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANAL-------AAARG 205 (379)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~-------~~~~~ 205 (379)
+.+.+...+..+.+.+.+++ ++...|+|.|.|.+...++...+ ..-+|+++....-+.|..+ .+-.|
T Consensus 173 YGE~~~~ql~si~dEl~~g~-----~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fG 247 (419)
T KOG3924|consen 173 YGETQLEQLRSIVDELKLGP-----ADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFG 247 (419)
T ss_pred hhhhhHHHHHHHHHHhccCC-----CCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhC
Confidence 33444455666667777765 89999999999999998887653 3567777654433333221 12223
Q ss_pred C-CCCeEEEEccCCCCC---CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 206 L-ADKVSFQVGDALQQP---FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 206 ~-~~~i~~~~~d~~~~~---~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
. +..++.+.+++.+-. .-....++|+++.+..- ++...-+.++..-+++|-+++-...
T Consensus 248 k~~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 248 KKPNKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISSKP 309 (419)
T ss_pred CCcCceeecccccCCHHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEecccc
Confidence 2 345777777765532 11245788887766543 3334445589999999999876653
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=90.66 E-value=2.6 Score=38.17 Aligned_cols=93 Identities=26% Similarity=0.359 Sum_probs=60.0
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
++.+||-.|+|. |..+..+++..|.+ |++++.++...+.+++. |....+... .........+|+|+....
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~~~~----~~~~~~~~~~d~vl~~~~ 168 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPVAAD----TADEIGGRGADVVIEASG 168 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCcccccc----chhhhcCCCCCEEEEccC
Confidence 478898888865 66777777777777 99999999887766653 211111100 100112346898875321
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
....+....+.|+++|.++....
T Consensus 169 ------~~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 169 ------SPSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred ------ChHHHHHHHHHhcCCcEEEEEec
Confidence 13467888999999999987653
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=90.41 E-value=3 Score=38.95 Aligned_cols=94 Identities=18% Similarity=0.112 Sum_probs=60.6
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC----CCCCCcccEEE
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVW 231 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~V~ 231 (379)
++.+||-+|+| .|..+..+++..|.+ +++++.++...+.+++ .+.. .++..+-... ....+.+|+|+
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~vd~v~ 231 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKEDNPYGFDVVI 231 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHhcCCCCcEEE
Confidence 47899999875 366667777777776 8999999888777643 2221 1221111110 11235689998
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.... ....+.++.+.|+++|+++....
T Consensus 232 ~~~~------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 232 EATG------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred ECCC------ChHHHHHHHHHHhcCCEEEEEec
Confidence 5421 13578888999999999987664
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=90.11 E-value=3.4 Score=38.58 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=60.5
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-CCCCcccEEEeccc
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSMES 235 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~V~~~~~ 235 (379)
++.+||-+|+| .|..+..+++..|.+|++++.++...+.+++ . +. . .+....-.... -..+.+|+|+....
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~-~---g~--~-~~~~~~~~~~~~~~~~~~d~vi~~~~ 234 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARK-L---GA--D-EVVDSGAELDEQAAAGGADVILVTVV 234 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-h---CC--c-EEeccCCcchHHhccCCCCEEEECCC
Confidence 37889999987 6777777777778899999999988777643 1 21 1 11111100000 01245898875321
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
. ...+..+.+.|+++|.++....
T Consensus 235 -----~-~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 235 -----S-GAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred -----c-HHHHHHHHHhcccCCEEEEECC
Confidence 1 3467888999999999887753
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.02 E-value=6.7 Score=34.53 Aligned_cols=102 Identities=17% Similarity=0.115 Sum_probs=62.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 225 (379)
+++||-.|++ |.++..+++.+ |.+|++++-++...+...+..... .++.++.+|+.+.. + .-+
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 6789999986 44444444433 789999999887666554444332 25788888887532 0 013
Q ss_pred cccEEEeccccCCCC---C--------------HHHHHHHHHHhcCCCCEEEEEec
Q 016981 226 QFDLVWSMESGEHMP---D--------------KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 226 ~fD~V~~~~~l~~~~---~--------------~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
..|.++......... + +..+++.+...++.+|.+++...
T Consensus 81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 468777654332111 1 12345666677788888777653
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=89.67 E-value=2.3 Score=40.35 Aligned_cols=98 Identities=17% Similarity=0.243 Sum_probs=59.6
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-----CC-CCCccc--
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PF-PDGQFD-- 228 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~-~~~~fD-- 228 (379)
++.+||=+|+|. |..+..+++..|.+|+++|.++..++.+++. |...-+.....+..++ .+ ....+|
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~ 241 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGF----GADLTLNPKDKSAREVKKLIKAFAKARGLRST 241 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCceEecCccccHHHHHHHHHhhcccCCCCCC
Confidence 488999999865 6677778887788999999999988877552 3210011111110000 00 112344
Q ss_pred --EEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 229 --LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 229 --~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+|+- .... ...+..+.++|++||++++....
T Consensus 242 ~d~v~d-----~~g~-~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 242 GWKIFE-----CSGS-KPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred cCEEEE-----CCCC-hHHHHHHHHHHhcCCeEEEECcC
Confidence 4441 2111 34677788899999999988754
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=89.63 E-value=2.8 Score=39.05 Aligned_cols=92 Identities=17% Similarity=0.146 Sum_probs=60.9
Q ss_pred CCCEEEEeC--CcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-----CCCCCcccEE
Q 016981 158 RPKNVVDVG--CGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiG--cGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~fD~V 230 (379)
++.+||=.| .|.|..+..+++..|.+|++++.++...+.+++ .|. . .++...-.+. ....+.+|+|
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~----~Ga-~--~vi~~~~~~~~~~v~~~~~~gvd~v 215 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE----LGF-D--AVFNYKTVSLEEALKEAAPDGIDCY 215 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC-C--EEEeCCCccHHHHHHHHCCCCcEEE
Confidence 378998887 456778888888888899999999887777765 232 1 1111111110 1112458888
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+-.- . ...+....+.|+++|+++...
T Consensus 216 ld~~--g-----~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 216 FDNV--G-----GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred EECC--C-----HHHHHHHHHhhccCCEEEEEc
Confidence 7431 1 245788899999999998765
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=89.57 E-value=3.4 Score=38.94 Aligned_cols=98 Identities=18% Similarity=0.238 Sum_probs=64.4
Q ss_pred CCCEEEEeC--CcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC---CCCCCcccEEEe
Q 016981 158 RPKNVVDVG--CGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiG--cGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~fD~V~~ 232 (379)
++.+||=.| .|.|.++..|++..|+.++++--+++-.+.+++ .|-..-+.+...|+.+. ......+|+|+-
T Consensus 142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~----lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D 217 (326)
T COG0604 142 PGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKE----LGADHVINYREEDFVEQVRELTGGKGVDVVLD 217 (326)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHcCCCCceEEEE
Confidence 389999998 456778999999987688888777766665544 33221233333332221 122346999985
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccC
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 266 (379)
.-. ...+.+..+.|+++|+++......
T Consensus 218 ~vG-------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 218 TVG-------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CCC-------HHHHHHHHHHhccCCEEEEEecCC
Confidence 322 566778899999999999987544
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=89.49 E-value=1.1 Score=43.13 Aligned_cols=101 Identities=17% Similarity=0.206 Sum_probs=56.9
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
++.+|+=+|+| .|..+...+...|++|+.+|.++..++.+...+ + ..+.....+...+.-.-..+|+|+..-..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~~~l~~~l~~aDvVI~a~~~ 240 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF---G--GRIHTRYSNAYEIEDAVKRADLLIGAVLI 240 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc---C--ceeEeccCCHHHHHHHHccCCEEEEcccc
Confidence 46779999988 466666667666889999999987665544332 1 11211111111111001358999865322
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.--+.+.-+-++..+.+|||+.++-..
T Consensus 241 ~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 241 PGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 111112212355667789998876654
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.11 E-value=2.6 Score=39.83 Aligned_cols=98 Identities=21% Similarity=0.231 Sum_probs=58.8
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC--CCCCCccc-EEEe
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFD-LVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD-~V~~ 232 (379)
++.+||=.|+|. |..+..+++..|.+ |++++.++...+.+++ .|...-+.....+...+ ......+| +|+-
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d 235 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQTFNSREMSAPQIQSVLRELRFDQLILE 235 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCceEecCcccCHHHHHHHhcCCCCCeEEEE
Confidence 478999998764 55677777777775 7899999988777654 22210011110010000 01223577 5542
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
.... ...+.+..+.|++||++++....
T Consensus 236 -----~~G~-~~~~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 236 -----TAGV-PQTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred -----CCCC-HHHHHHHHHHhhcCCEEEEEccC
Confidence 1111 45788889999999999988644
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=88.98 E-value=2.7 Score=40.44 Aligned_cols=95 Identities=18% Similarity=0.255 Sum_probs=60.5
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc-----CCC-C-CCCCCccc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGD-----ALQ-Q-PFPDGQFD 228 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d-----~~~-~-~~~~~~fD 228 (379)
++.+||=+|+|. |..+..+++..|+ +|+++|.++..++.+++ .|.. .++... ..+ . ....+.+|
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~~~v~~~~~~g~d 270 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGIT---DFINPKDSDKPVHERIREMTGGGVD 270 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCc---EEEecccccchHHHHHHHHhCCCCC
Confidence 488999999863 5667777777777 69999999988888765 2321 122111 100 0 01123589
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCC-CEEEEEecc
Q 016981 229 LVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTWC 265 (379)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~i~~~~ 265 (379)
+|+-.-. . ...+....+.+++| |++++....
T Consensus 271 vvid~~G-----~-~~~~~~a~~~~~~g~G~~v~~G~~ 302 (381)
T PLN02740 271 YSFECAG-----N-VEVLREAFLSTHDGWGLTVLLGIH 302 (381)
T ss_pred EEEECCC-----C-hHHHHHHHHhhhcCCCEEEEEccC
Confidence 8874321 1 35677888899997 998887643
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.98 E-value=4.5 Score=36.58 Aligned_cols=73 Identities=27% Similarity=0.211 Sum_probs=47.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 225 (379)
+.++|-.|. +|.++..+++.+ |.+|+.++.++..++...+.+...+ .++.++.+|+.+.. + ..+
T Consensus 9 ~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 9 GKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 678888885 445555554443 7899999998877665555444332 35678888887531 1 124
Q ss_pred cccEEEecc
Q 016981 226 QFDLVWSME 234 (379)
Q Consensus 226 ~fD~V~~~~ 234 (379)
.+|+++.+.
T Consensus 86 ~iD~vi~~a 94 (264)
T PRK07576 86 PIDVLVSGA 94 (264)
T ss_pred CCCEEEECC
Confidence 579998654
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.86 E-value=2.6 Score=38.21 Aligned_cols=102 Identities=18% Similarity=0.161 Sum_probs=68.9
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC---CCcccEEEec
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP---DGQFDLVWSM 233 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~fD~V~~~ 233 (379)
.++.|+-+| ---..+++++-.. ..+|..+|++...+...++.++..|+ +|+..+.-|+.+ |+| .+.||+.+.
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~-plpe~~~~kFDvfiT- 227 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRN-PLPEDLKRKFDVFIT- 227 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhcc-cChHHHHhhCCeeec-
Confidence 477899998 4444455544433 67999999999999999999999887 578888888765 333 368998873
Q ss_pred cccCCCCCHHHHHHHHHHhcCCC---CEEEEEe
Q 016981 234 ESGEHMPDKSKFVSELARVTAPA---GTIIIVT 263 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~Lkpg---G~l~i~~ 263 (379)
.--+.+.....++..=...||-- |++.++.
T Consensus 228 DPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 228 DPPETIKALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred CchhhHHHHHHHHhccHHHhcCCCccceEeeee
Confidence 22222222344555555667765 6666643
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=88.83 E-value=6.9 Score=35.97 Aligned_cols=79 Identities=16% Similarity=0.050 Sum_probs=59.7
Q ss_pred CCCCEEEEeCCcccH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----------CC
Q 016981 157 KRPKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FP 223 (379)
Q Consensus 157 ~~~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 223 (379)
-.+..||==|.|.|. .+..++++ +++++..|++..-.+...+.++..| ++..+.+|+.+.. -.
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~r-g~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e 111 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKR-GAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKE 111 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHh-CCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHh
Confidence 457889998988875 45666666 7899999999988888888777664 6888999987632 12
Q ss_pred CCcccEEEeccccCCC
Q 016981 224 DGQFDLVWSMESGEHM 239 (379)
Q Consensus 224 ~~~fD~V~~~~~l~~~ 239 (379)
-+..|+++.+-.+.+.
T Consensus 112 ~G~V~ILVNNAGI~~~ 127 (300)
T KOG1201|consen 112 VGDVDILVNNAGIVTG 127 (300)
T ss_pred cCCceEEEeccccccC
Confidence 4679999988766544
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=88.71 E-value=4 Score=39.57 Aligned_cols=88 Identities=17% Similarity=0.170 Sum_probs=56.5
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
.+++|+=+|+|. |......++.+|++|+++|.++.....+.. .| ..+ .+.++. . ...|+|+..-
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~----~G----~~v--~~leea-l--~~aDVVItaT-- 258 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM----DG----FRV--MTMEEA-A--KIGDIFITAT-- 258 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh----cC----CEe--CCHHHH-H--hcCCEEEECC--
Confidence 488999999996 655666666668999999998865433332 12 222 222221 1 3469887632
Q ss_pred CCCCCHHHHHH-HHHHhcCCCCEEEEEec
Q 016981 237 EHMPDKSKFVS-ELARVTAPAGTIIIVTW 264 (379)
Q Consensus 237 ~~~~~~~~~l~-~~~r~LkpgG~l~i~~~ 264 (379)
....++. +....+|+|++++....
T Consensus 259 ----G~~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 259 ----GNKDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred ----CCHHHHHHHHHhcCCCCcEEEEECC
Confidence 1244554 48889999999988763
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=88.69 E-value=0.53 Score=45.20 Aligned_cols=59 Identities=20% Similarity=0.288 Sum_probs=50.1
Q ss_pred CCeEEEEccCCCC--CCCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEEeccC
Q 016981 208 DKVSFQVGDALQQ--PFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 208 ~~i~~~~~d~~~~--~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~ 266 (379)
++++++.+++.+. ..+++++|.++....+.++++. .+.++++.+.++|||++++=....
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 7899999998774 3568999999999999999654 788999999999999999976543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.56 E-value=2.5 Score=40.41 Aligned_cols=95 Identities=23% Similarity=0.254 Sum_probs=56.3
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-ccCCCCCCCCCcccEEEeccc
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~fD~V~~~~~ 235 (379)
++.+||=.|+| .|..+..+++..|.++++++.++.....+.+ ..|.. .++. .+........+.+|+|+-.-.
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~---~~Ga~---~vi~~~~~~~~~~~~~~~D~vid~~g 256 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAIN---RLGAD---SFLVSTDPEKMKAAIGTMDYIIDTVS 256 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHH---hCCCc---EEEcCCCHHHHHhhcCCCCEEEECCC
Confidence 37888889886 3667778888778899999887654332211 12321 1111 110111000124788874321
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
. ...+.+..+.|++||+++....
T Consensus 257 -----~-~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 257 -----A-VHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred -----C-HHHHHHHHHHhcCCcEEEEeCC
Confidence 1 3467888999999999988764
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.44 E-value=0.31 Score=46.53 Aligned_cols=61 Identities=23% Similarity=0.182 Sum_probs=52.6
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEEccCCC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADK-VSFQVGDALQ 219 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~ 219 (379)
++..|-|+-||.|-++..++.+ +++|++-|++++++++.+.+++.+.+.+. +..+..|+.+
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK-~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAAKK-GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD 310 (495)
T ss_pred CcchhhhhhcCcCccccchhhc-CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence 4889999999999999999988 79999999999999999999887766554 7777777643
|
|
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=88.36 E-value=6 Score=37.08 Aligned_cols=97 Identities=21% Similarity=0.229 Sum_probs=61.5
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-C--CCCCCcccEEEec
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q--PFPDGQFDLVWSM 233 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~--~~~~~~fD~V~~~ 233 (379)
++.+||-.|+|. |..+..+++..|.+|+++..+++..+.+++. +...-+.....+... + ..+...+|+|+..
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~----g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~ 234 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAREL----GADDTINVGDEDVAARLRELTDGEGADVVIDA 234 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHh----CCCEEecCcccCHHHHHHHHhCCCCCCEEEEC
Confidence 478999998764 7778888887789999998888887776442 211001111111000 1 0123458999854
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.. ....+.++.+.|+++|.++....
T Consensus 235 ~g------~~~~~~~~~~~l~~~G~~i~~g~ 259 (337)
T cd08261 235 TG------NPASMEEAVELVAHGGRVVLVGL 259 (337)
T ss_pred CC------CHHHHHHHHHHHhcCCEEEEEcC
Confidence 21 13567888999999999887653
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=88.26 E-value=5.7 Score=36.90 Aligned_cols=98 Identities=23% Similarity=0.216 Sum_probs=59.0
Q ss_pred CCCEEEEeC-CcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE-EccCCC-C-CCCCCcccEEEec
Q 016981 158 RPKNVVDVG-CGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQ-VGDALQ-Q-PFPDGQFDLVWSM 233 (379)
Q Consensus 158 ~~~~vLDiG-cGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~-~~d~~~-~-~~~~~~fD~V~~~ 233 (379)
|+++|-=+| +|-|.++..+++.+|.+|+++|-+..--+.|-+++ |-..-+.+. ..|... . ..-++-.|.|...
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~L---GAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~ 257 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSL---GADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL 257 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhc---CcceeEEecCCHHHHHHHHHhhcCcceeeeec
Confidence 488777766 45799999999999999999999975555544433 311111111 111100 0 0112333444322
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCCEEEEEeccC
Q 016981 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 266 (379)
- ...+..+.+.||++|.+++.....
T Consensus 258 --a------~~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 258 --A------EHALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred --c------ccchHHHHHHhhcCCEEEEEeCcC
Confidence 1 334777889999999999987543
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=88.03 E-value=5.3 Score=37.53 Aligned_cols=92 Identities=13% Similarity=0.123 Sum_probs=59.3
Q ss_pred CCEEEEeCC--cccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-----CCCCCcccEE
Q 016981 159 PKNVVDVGC--GIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (379)
Q Consensus 159 ~~~vLDiGc--GtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~fD~V 230 (379)
+.+||=.|+ |.|..+..+++..|. +|++++.++...+.+++.+ |.. . ++..+-.++ ....+.+|+|
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l---Ga~-~--vi~~~~~~~~~~i~~~~~~gvd~v 228 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL---GFD-A--AINYKTDNVAERLRELCPEGVDVY 228 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc---CCc-E--EEECCCCCHHHHHHHHCCCCceEE
Confidence 378988885 577888888888887 7999999988777665532 321 1 111111111 0112468988
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+-.- .. ..+.++.+.|+++|+++...
T Consensus 229 id~~-----g~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 229 FDNV-----GG--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred EECC-----Cc--HHHHHHHHHhccCCEEEEEe
Confidence 7421 12 23578889999999998765
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.97 E-value=6.7 Score=34.50 Aligned_cols=74 Identities=16% Similarity=0.083 Sum_probs=48.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CC-----CC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~~ 225 (379)
+.+||=.|. +|.++..+++.+ |.+|++++.++.......+.+... .++.++.+|+.+.. +. -+
T Consensus 6 ~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 6 GKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 578888884 666666665544 789999998887665554444322 35788888886531 10 13
Q ss_pred cccEEEecccc
Q 016981 226 QFDLVWSMESG 236 (379)
Q Consensus 226 ~fD~V~~~~~l 236 (379)
.+|.|+.....
T Consensus 82 ~~d~vi~~ag~ 92 (237)
T PRK07326 82 GLDVLIANAGV 92 (237)
T ss_pred CCCEEEECCCC
Confidence 68988876543
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=87.93 E-value=7 Score=36.73 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=62.4
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-cCCC-C-CCCCCcccEEEe
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DALQ-Q-PFPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~~fD~V~~ 232 (379)
++.+||=.|+ |.|..+..+++..|.+|++++.++...+.+++.+ |...-+..... +..+ + ....+.+|+|+-
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~gvd~v~d 227 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL---GFDDAFNYKEEPDLDAALKRYFPNGIDIYFD 227 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCceeEEcCCcccHHHHHHHhCCCCcEEEEE
Confidence 4889999886 5677888888888999999999988777766532 32111111111 1111 0 111246888874
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
. +. ...+.++.+.|+++|+++....
T Consensus 228 ~-----~g--~~~~~~~~~~l~~~G~iv~~G~ 252 (338)
T cd08295 228 N-----VG--GKMLDAVLLNMNLHGRIAACGM 252 (338)
T ss_pred C-----CC--HHHHHHHHHHhccCcEEEEecc
Confidence 3 11 2567888999999999987653
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=87.88 E-value=1.6 Score=39.36 Aligned_cols=105 Identities=22% Similarity=0.239 Sum_probs=59.1
Q ss_pred CCEEEEeCCcccHHHHHHHHH---c---CCEEEEEeCCH--------------------------HHHHHHHHHHHHcCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKK---F---GAKCQGITLSP--------------------------VQAQRANALAAARGL 206 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~---~---~~~v~gvD~s~--------------------------~~~~~a~~~~~~~~~ 206 (379)
+..|+|+||-.|..+..++.. + +.++++.|.=. ...+..++++.+.|+
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 678999999999876655432 2 34688888411 123444555544443
Q ss_pred -CCCeEEEEccCCCC-C-CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 207 -ADKVSFQVGDALQQ-P-FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 207 -~~~i~~~~~d~~~~-~-~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
.+++.++.+.+.+. | .+.+.+-++..-. ........+|..++..|.|||.+++-++.
T Consensus 155 ~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~--DlYesT~~aLe~lyprl~~GGiIi~DDY~ 214 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDAPIERIALLHLDC--DLYESTKDALEFLYPRLSPGGIIIFDDYG 214 (248)
T ss_dssp SSTTEEEEES-HHHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred CcccEEEECCcchhhhccCCCccEEEEEEec--cchHHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence 35899999998653 3 2233333332221 11122378899999999999999997754
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.58 E-value=6.7 Score=36.91 Aligned_cols=97 Identities=23% Similarity=0.301 Sum_probs=60.4
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC----CCC--CCCCCcccE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDA----LQQ--PFPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~----~~~--~~~~~~fD~ 229 (379)
++.+||-.|+|. |..+..+++..|.+ |++++-++...+.+++. +...-+.....+. ..+ ......+|+
T Consensus 162 ~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~ 237 (343)
T cd05285 162 PGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAELLGGKGPDV 237 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHHHhCCCCCCE
Confidence 478888888765 66777788877877 89999888877776542 2210011111110 000 122345899
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|+-.... ...+....+.|+++|+++....
T Consensus 238 vld~~g~------~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 238 VIECTGA------ESCIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred EEECCCC------HHHHHHHHHHhhcCCEEEEEcc
Confidence 9854221 2367888999999999887653
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=87.50 E-value=6.5 Score=36.89 Aligned_cols=96 Identities=22% Similarity=0.257 Sum_probs=58.5
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-C--CCCCCcccEEEe
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q--PFPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~--~~~~~~fD~V~~ 232 (379)
++.+||-.|+| .|..+..+++..|. .+++++.++...+.+++. +...-+.....+..+ + -.+.+.+|+|+-
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld 242 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GATDIINPKNGDIVEQILELTGGRGVDCVIE 242 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCcEEEcCCcchHHHHHHHHcCCCCCcEEEE
Confidence 47888888775 46677778887774 899998888776665542 211001111111100 0 012356898875
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
... ....+.+..+.|+++|+++...
T Consensus 243 ~~g------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 243 AVG------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred ccC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 321 1257888899999999988765
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.47 E-value=10 Score=36.18 Aligned_cols=98 Identities=20% Similarity=0.186 Sum_probs=60.6
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE--ccCCC-C-CCCCCcccEEE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQV--GDALQ-Q-PFPDGQFDLVW 231 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~-~-~~~~~~fD~V~ 231 (379)
++.+||=+|+|. |..+..+++..|+ +|+++|.++..++.+++. |...-+.... .+... . ....+.+|+|+
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~----Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vi 260 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL----GATDCVNPNDYDKPIQEVIVEITDGGVDYSF 260 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCeEEcccccchhHHHHHHHHhCCCCCEEE
Confidence 388999999863 6677778887777 799999999988887552 3211011110 00000 0 01123588887
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCC-CEEEEEecc
Q 016981 232 SMESGEHMPDKSKFVSELARVTAPA-GTIIIVTWC 265 (379)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~i~~~~ 265 (379)
-.- .. ...+.+..+.+++| |++++....
T Consensus 261 d~~-----G~-~~~~~~~~~~~~~~~G~~v~~g~~ 289 (368)
T TIGR02818 261 ECI-----GN-VNVMRAALECCHKGWGESIIIGVA 289 (368)
T ss_pred ECC-----CC-HHHHHHHHHHhhcCCCeEEEEecc
Confidence 431 11 34677888899986 998887653
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=87.40 E-value=2.6 Score=40.54 Aligned_cols=97 Identities=22% Similarity=0.242 Sum_probs=58.5
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc--cCCC-C-CCCCCcccEEE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVG--DALQ-Q-PFPDGQFDLVW 231 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~--d~~~-~-~~~~~~fD~V~ 231 (379)
++.+||-.|+|. |..+..+++..|. .|+++|.++...+.+++ .|...-+..... +... + ....+.+|+|+
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vi 268 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMTGGGADYSF 268 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHhCCCCCEEE
Confidence 488999998763 5566777777676 58899999988777754 232100111100 1100 0 01123588887
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCC-CEEEEEec
Q 016981 232 SMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (379)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~i~~~ 264 (379)
-.- . . ...+....+.|++| |++++...
T Consensus 269 d~~--G---~-~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 269 ECV--G---D-TGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred ECC--C---C-hHHHHHHHHhhccCCCEEEEECC
Confidence 432 1 1 34577888899999 99988664
|
|
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=86.57 E-value=1.9 Score=40.58 Aligned_cols=94 Identities=18% Similarity=0.180 Sum_probs=59.7
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc---CCCC-C-CCCCcccEE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGD---ALQQ-P-FPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d---~~~~-~-~~~~~fD~V 230 (379)
++.+||-.|+|. |..+..+++..|.. +++++-++...+.+++ .+. ..++..+ ...+ . .....+|+|
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~---~~~~~~~~~~~~~~~~~~~~~~~d~v 231 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGA---DDTINPKEEDVEKVRELTEGRGADLV 231 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC---CEEecCccccHHHHHHHhCCCCCCEE
Confidence 478899998765 66777778777776 9999988877776643 222 1111111 0111 1 122348999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+... .....+..+.+.|+++|+++....
T Consensus 232 ld~~------g~~~~~~~~~~~l~~~G~~v~~g~ 259 (343)
T cd08236 232 IEAA------GSPATIEQALALARPGGKVVLVGI 259 (343)
T ss_pred EECC------CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 8541 114567888999999999887653
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.55 E-value=12 Score=33.25 Aligned_cols=102 Identities=19% Similarity=0.153 Sum_probs=58.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCH-HHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CC-----C
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSP-VQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~ 224 (379)
++++|-.|++. .++..+++.+ |.+|++++-+. ...+.....++..+ .++.++.+|+.+.. +. -
T Consensus 6 ~k~vlItGasg-giG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 6 GKTALVTGSSR-GIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CcEEEEECCCC-cHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 67899888644 4455555443 77898887653 23333333333322 36778888987632 10 1
Q ss_pred CcccEEEeccccCCCC-------------CHHHHHHHHHHhcCCCCEEEEEe
Q 016981 225 GQFDLVWSMESGEHMP-------------DKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 225 ~~fD~V~~~~~l~~~~-------------~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+..|+|+.+....... -...+++.+.+.++.+|++++..
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 3578877654332110 12356777777777677766654
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=86.45 E-value=3.6 Score=40.56 Aligned_cols=102 Identities=16% Similarity=0.143 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
.++-+++..+.. ..+++|+=+|+|. |......++.+|++|+++|.++.....+.. .| ..+. +..+
T Consensus 240 ~~d~i~r~t~i~----LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~----~G----~~vv--~leE 305 (477)
T PLN02494 240 LPDGLMRATDVM----IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALM----EG----YQVL--TLED 305 (477)
T ss_pred HHHHHHHhcCCc----cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHh----cC----Ceec--cHHH
Confidence 455555554432 2489999999995 554455555558899999999865433322 12 2211 2222
Q ss_pred CCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
. . ...|+|+....-. .-+..+....+|+||.|+.+..
T Consensus 306 a-l--~~ADVVI~tTGt~-----~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 306 V-V--SEADIFVTTTGNK-----DIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred H-H--hhCCEEEECCCCc-----cchHHHHHhcCCCCCEEEEcCC
Confidence 1 1 3479998632222 2234778889999999998764
|
|
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=86.27 E-value=2 Score=43.11 Aligned_cols=90 Identities=17% Similarity=0.230 Sum_probs=58.4
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC----C----CCCCcc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----P----FPDGQF 227 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~----~~~~~f 227 (379)
++..|||+||..|.|....++.. +.-|+|+|+-|.- ..+++.-.+.|++.. + ...-..
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik------------p~~~c~t~v~dIttd~cr~~l~k~l~t~~a 111 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK------------PIPNCDTLVEDITTDECRSKLRKILKTWKA 111 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc------------cCCccchhhhhhhHHHHHHHHHHHHHhCCC
Confidence 47889999999999999988877 6789999997632 224565566666432 1 122345
Q ss_pred cEEEeccccCCCC-CH-----------HHHHHHHHHhcCCCCEEE
Q 016981 228 DLVWSMESGEHMP-DK-----------SKFVSELARVTAPAGTII 260 (379)
Q Consensus 228 D~V~~~~~l~~~~-~~-----------~~~l~~~~r~LkpgG~l~ 260 (379)
|+|+.-+. +.+. .+ -..|+-+...|+-||.++
T Consensus 112 dvVLhDga-pnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 112 DVVLHDGA-PNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred cEEeecCC-CccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence 77764332 2221 11 235556677889999943
|
|
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=85.86 E-value=10 Score=35.10 Aligned_cols=90 Identities=18% Similarity=0.174 Sum_probs=58.5
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
++.+||=.|+| .|..+..+++..|.++++++.++...+.+++ .|.. .+ .+..+. ...+.+|+|+-..
T Consensus 155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~-~~----~~~~~~-~~~~~~d~vid~~-- 222 (319)
T cd08242 155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGVE-TV----LPDEAE-SEGGGFDVVVEAT-- 222 (319)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCc-EE----eCcccc-ccCCCCCEEEECC--
Confidence 37888888764 2445555666668899999999988887775 2321 11 111111 2345689988531
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.. ...+..+.+.|+++|.+++..
T Consensus 223 ---g~-~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 223 ---GS-PSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred ---CC-hHHHHHHHHHhhcCCEEEEEc
Confidence 11 446778889999999998743
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=85.86 E-value=6.9 Score=37.37 Aligned_cols=98 Identities=23% Similarity=0.239 Sum_probs=60.4
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc--cCCC-C-CCCCCcccEEE
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVG--DALQ-Q-PFPDGQFDLVW 231 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~--d~~~-~-~~~~~~fD~V~ 231 (379)
++.+||=+|+| .|..+..+++..|. .|+++|.++..++.+++ .|...-+..... +..+ . ....+.+|+|+
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vi 261 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMTDGGVDYTF 261 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHhCCCCcEEE
Confidence 48899998875 35566777777787 79999999998887754 232100111110 0100 0 01123689887
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCC-CEEEEEecc
Q 016981 232 SMESGEHMPDKSKFVSELARVTAPA-GTIIIVTWC 265 (379)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~i~~~~ 265 (379)
-. ... ...+....+.|+++ |++++....
T Consensus 262 d~--~g~----~~~~~~a~~~l~~~~G~~v~~g~~ 290 (368)
T cd08300 262 EC--IGN----VKVMRAALEACHKGWGTSVIIGVA 290 (368)
T ss_pred EC--CCC----hHHHHHHHHhhccCCCeEEEEccC
Confidence 43 111 35678888999997 999887643
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.78 E-value=8.9 Score=40.13 Aligned_cols=102 Identities=22% Similarity=0.185 Sum_probs=62.9
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CC-----C
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~ 224 (379)
++++||=.|++. .++..+++.+ |.+|+.+|.++..++.+.+.+... .++.++.+|+.+.. +. .
T Consensus 421 ~gk~vLVTGasg-gIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 421 AGKVALVTGAAG-GIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCEEEEecCCC-HHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 357888887643 3444444333 789999999987776655544322 36788888886632 11 2
Q ss_pred CcccEEEeccccCCCCC-------------------HHHHHHHHHHhcCC---CCEEEEEe
Q 016981 225 GQFDLVWSMESGEHMPD-------------------KSKFVSELARVTAP---AGTIIIVT 263 (379)
Q Consensus 225 ~~fD~V~~~~~l~~~~~-------------------~~~~l~~~~r~Lkp---gG~l~i~~ 263 (379)
+.+|+|+.+-....... ...+++.+.+.++. ||.+++..
T Consensus 497 g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 497 GGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 46899987665432211 23456666777766 67777765
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=85.74 E-value=8.8 Score=39.50 Aligned_cols=89 Identities=13% Similarity=0.086 Sum_probs=57.1
Q ss_pred CEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----CCCCcccEEEe
Q 016981 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWS 232 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~ 232 (379)
.+|+=+|+ |.++..+++.. +..++.+|.+++.++.+++ .....+.+|+.+.. ..-+..|.+++
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--------~g~~v~~GDat~~~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 401 PQVIIVGF--GRFGQVIGRLLMANKMRITVLERDISAVNLMRK--------YGYKVYYGDATQLELLRAAGAEKAEAIVI 470 (601)
T ss_pred CCEEEecC--chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--------CCCeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence 45655554 55655555543 6799999999999988765 24667889988742 12346777765
Q ss_pred ccccCCCCCHH--HHHHHHHHhcCCCCEEEEEe
Q 016981 233 MESGEHMPDKS--KFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 233 ~~~l~~~~~~~--~~l~~~~r~LkpgG~l~i~~ 263 (379)
. .+|.. ..+-...|.+.|...++.-.
T Consensus 471 ~-----~~d~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 471 T-----CNEPEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred E-----eCCHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 3 23332 23444566678888877654
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.63 E-value=1.5 Score=42.97 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=73.8
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-------CCCCCcccE
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-------PFPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-------~~~~~~fD~ 229 (379)
.+..+|-+|-|.|.+...+...+ ...+++++++|.|++.|++.+....- .+..+...|..+. .-.+..||+
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 36789999999999999988877 47999999999999999988643221 1233333343221 013567998
Q ss_pred EEecc-c--cCCCCCH------HHHHHHHHHhcCCCCEEEEEeccCC
Q 016981 230 VWSME-S--GEHMPDK------SKFVSELARVTAPAGTIIIVTWCHR 267 (379)
Q Consensus 230 V~~~~-~--l~~~~~~------~~~l~~~~r~LkpgG~l~i~~~~~~ 267 (379)
+..-- . .+-+.-+ ..+|..+...|.|-|.+++--.+.+
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 87421 0 2222111 5688889999999999988665443
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.41 E-value=9.5 Score=34.31 Aligned_cols=72 Identities=14% Similarity=0.198 Sum_probs=45.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CC-----CC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~~ 225 (379)
++++|=.|++. .++..+++.+ |.+|+.+|.++..++...+.. ..++.++.+|+.+.. +. -+
T Consensus 6 ~k~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 6 GKVAIVTGGAT-LIGAAVARALVAAGARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 56888888654 4455544443 789999999876554443322 236788889987642 10 14
Q ss_pred cccEEEecccc
Q 016981 226 QFDLVWSMESG 236 (379)
Q Consensus 226 ~fD~V~~~~~l 236 (379)
..|+++.+...
T Consensus 80 ~id~lv~~ag~ 90 (261)
T PRK08265 80 RVDILVNLACT 90 (261)
T ss_pred CCCEEEECCCC
Confidence 68988876543
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=85.41 E-value=11 Score=36.64 Aligned_cols=99 Identities=16% Similarity=0.119 Sum_probs=59.5
Q ss_pred CCCEEEEeC-Cc-ccHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC---C-----C-CC
Q 016981 158 RPKNVVDVG-CG-IGGSSRYLAKKFGA---KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ---Q-----P-FP 223 (379)
Q Consensus 158 ~~~~vLDiG-cG-tG~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~---~-----~-~~ 223 (379)
++.+||=+| +| .|..+..+++..|. +|+++|.++..++.+++................|..+ . . ..
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~ 254 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTG 254 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhC
Confidence 478899887 34 67788888887542 7999999999999887742110000011111112111 0 0 12
Q ss_pred CCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEE
Q 016981 224 DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 224 ~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~ 262 (379)
...+|+|+.... . ...+....+.++++|.+++.
T Consensus 255 g~g~D~vid~~g-----~-~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 255 GQGFDDVFVFVP-----V-PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCCCCEEEEcCC-----C-HHHHHHHHHHhccCCeEEEE
Confidence 235888875321 1 45778889999999876654
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.23 E-value=5.3 Score=38.42 Aligned_cols=94 Identities=19% Similarity=0.249 Sum_probs=56.5
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHH-HHHHHHHHHHcCCCCCeEEEE-ccCCCCCCCCCcccEEEecc
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQ-AQRANALAAARGLADKVSFQV-GDALQQPFPDGQFDLVWSME 234 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~-~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~fD~V~~~~ 234 (379)
++.+||=.|+| .|..+..+++..|++|++++.++.. .+.+++ .|.. .++. .+.....-..+.+|+|+-.-
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~----lGa~---~~i~~~~~~~v~~~~~~~D~vid~~ 250 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDR----LGAD---SFLVTTDSQKMKEAVGTMDFIIDTV 250 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHh----CCCc---EEEcCcCHHHHHHhhCCCcEEEECC
Confidence 47889888876 3667777888778899999987643 334332 3321 1111 01011100012478887431
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.. ...+..+.+.|++||+++....
T Consensus 251 -----G~-~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 251 -----SA-EHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred -----Cc-HHHHHHHHHhhcCCCEEEEEcc
Confidence 11 3467888899999999988764
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=85.17 E-value=15 Score=35.50 Aligned_cols=101 Identities=19% Similarity=0.194 Sum_probs=60.6
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc---cCCC-C-C-CCCCcccE
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVG---DALQ-Q-P-FPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~---d~~~-~-~-~~~~~fD~ 229 (379)
++.+||=.|+| .|..+..+++..|.+ ++.+|.++.-++.+++. |. . .+... +..+ + . .....+|+
T Consensus 185 ~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga--~-~v~~~~~~~~~~~v~~~~~~~g~Dv 257 (393)
T TIGR02819 185 PGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GC--E-TVDLSKDATLPEQIEQILGEPEVDC 257 (393)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CC--e-EEecCCcccHHHHHHHHcCCCCCcE
Confidence 37788778876 366667777776765 56678888777777662 32 1 11111 1101 0 0 12235898
Q ss_pred EEeccccCC--------CCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 230 VWSMESGEH--------MPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 230 V~~~~~l~~--------~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
|+-.-.-.. ..+....+++..+++++||++++....
T Consensus 258 vid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 258 AVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred EEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 874322110 012235789999999999999998764
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.16 E-value=9.6 Score=34.16 Aligned_cols=74 Identities=19% Similarity=0.143 Sum_probs=47.1
Q ss_pred CEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CCCc
Q 016981 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDGQ 226 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~~ 226 (379)
.+||-.|+ +|.++..+++.+ |.+|++++.++...+...+.+...+ .++.+..+|+.+.. + .-+.
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFGG 78 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 35776664 455555555443 7899999998876665555554433 46888888987632 0 0135
Q ss_pred ccEEEecccc
Q 016981 227 FDLVWSMESG 236 (379)
Q Consensus 227 fD~V~~~~~l 236 (379)
.|+|+.+...
T Consensus 79 id~vi~~ag~ 88 (263)
T PRK06181 79 IDILVNNAGI 88 (263)
T ss_pred CCEEEECCCc
Confidence 7998876544
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.11 E-value=17 Score=33.79 Aligned_cols=77 Identities=18% Similarity=0.074 Sum_probs=49.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----------CCCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~ 225 (379)
++++|=.|++.|. +..+++.+ |.+|+.++-+....+.+.+.+.......++.++.+|+.+.. -..+
T Consensus 14 gk~~lITGas~GI-G~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~ 92 (313)
T PRK05854 14 GKRAVVTGASDGL-GLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR 92 (313)
T ss_pred CCEEEEeCCCChH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 6788888876654 44444333 78999999888766666555543321236888899987642 1125
Q ss_pred cccEEEecccc
Q 016981 226 QFDLVWSMESG 236 (379)
Q Consensus 226 ~fD~V~~~~~l 236 (379)
..|+++.+-..
T Consensus 93 ~iD~li~nAG~ 103 (313)
T PRK05854 93 PIHLLINNAGV 103 (313)
T ss_pred CccEEEECCcc
Confidence 68999876544
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.98 E-value=9.8 Score=37.19 Aligned_cols=88 Identities=16% Similarity=0.157 Sum_probs=55.6
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
.+.+|+=+|+|. |......++..|.+|+.+|.++.....+.. .| ..+ .++.+. -...|+|+..-
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~----~G----~~v--~~l~ea---l~~aDVVI~aT-- 275 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM----DG----FRV--MTMEEA---AELGDIFVTAT-- 275 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh----cC----CEe--cCHHHH---HhCCCEEEECC--
Confidence 388999999985 444444455558899999999865443322 12 111 122221 13589998642
Q ss_pred CCCCCHHHHHH-HHHHhcCCCCEEEEEec
Q 016981 237 EHMPDKSKFVS-ELARVTAPAGTIIIVTW 264 (379)
Q Consensus 237 ~~~~~~~~~l~-~~~r~LkpgG~l~i~~~ 264 (379)
.. ..++. +....+|+|+.++....
T Consensus 276 ---G~-~~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 276 ---GN-KDVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred ---CC-HHHHHHHHHhcCCCCCEEEEcCC
Confidence 22 34555 68899999999888764
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=84.91 E-value=7.6 Score=30.92 Aligned_cols=90 Identities=23% Similarity=0.376 Sum_probs=49.6
Q ss_pred CCEEEEeCCcccH-HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC-CCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGG-SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~-~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~V~~~~~l 236 (379)
..+|+|+|-|.=. .+..|.+. |..|+++|+.+. .+ +..+.++..|+.+..+. -...|+|++..
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~---~a---------~~g~~~v~DDif~P~l~iY~~a~lIYSiR-- 78 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER-GFDVIATDINPR---KA---------PEGVNFVVDDIFNPNLEIYEGADLIYSIR-- 78 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S----------------STTEE---SSS--HHHHTTEEEEEEES--
T ss_pred CCcEEEECcCCCHHHHHHHHHc-CCcEEEEECccc---cc---------ccCcceeeecccCCCHHHhcCCcEEEEeC--
Confidence 5699999999765 45556655 799999999986 11 13577899998774311 13578888654
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEeccC
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 266 (379)
.-++.+..+.++++.+ |.-+++.....
T Consensus 79 -PP~El~~~il~lA~~v--~adlii~pL~~ 105 (127)
T PF03686_consen 79 -PPPELQPPILELAKKV--GADLIIRPLGG 105 (127)
T ss_dssp ---TTSHHHHHHHHHHH--T-EEEEE-BTT
T ss_pred -CChHHhHHHHHHHHHh--CCCEEEECCCC
Confidence 3345577777777744 56677766543
|
; PDB: 2K4M_A. |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=84.66 E-value=5.9 Score=37.43 Aligned_cols=97 Identities=23% Similarity=0.263 Sum_probs=59.8
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-C-C-CCCCcccEEEe
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q-P-FPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~-~~~~~fD~V~~ 232 (379)
++.+||=.|+| .|..+..+++..|. .++++|.++...+.+++ .|...-+.....+... . . .....+|+|+-
T Consensus 166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld 241 (351)
T cd08285 166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTGGKGVDAVII 241 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhCCCCCcEEEE
Confidence 47889888876 45667777777776 59999999887777664 2321111111111100 0 1 12245898874
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
... . ...+.++.+.|+++|+++....
T Consensus 242 ~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 242 AGG-----G-QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred CCC-----C-HHHHHHHHHHhhcCCEEEEecc
Confidence 211 1 3568899999999999887654
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.64 E-value=7.5 Score=34.43 Aligned_cols=75 Identities=19% Similarity=0.134 Sum_probs=49.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CC-----CC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~~ 225 (379)
++++|=.|+ +|.++..+++.+ |.+|++++-++..+....+.++..+ .++.++.+|+.+.. +. -+
T Consensus 7 ~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 7 GKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 678887775 555566665544 7899999988877666555554433 46888899987632 10 14
Q ss_pred cccEEEecccc
Q 016981 226 QFDLVWSMESG 236 (379)
Q Consensus 226 ~fD~V~~~~~l 236 (379)
..|+|+.+...
T Consensus 84 ~id~vi~~ag~ 94 (250)
T PRK12939 84 GLDGLVNNAGI 94 (250)
T ss_pred CCCEEEECCCC
Confidence 68998876543
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.36 E-value=17 Score=34.29 Aligned_cols=75 Identities=23% Similarity=0.157 Sum_probs=49.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-C---------CCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-F---------PDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~---------~~~ 225 (379)
+.+||=.|++.| ++..+++.+ |.+|+.++-++..++...+.+...+ .++.++.+|+.+.. . .-+
T Consensus 8 ~k~vlITGas~g-IG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 8 RQVVVITGASAG-VGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 567888886544 444444433 7899999999887776666665544 36788889987632 0 124
Q ss_pred cccEEEecccc
Q 016981 226 QFDLVWSMESG 236 (379)
Q Consensus 226 ~fD~V~~~~~l 236 (379)
.+|+++.+-..
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 68999876554
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=84.29 E-value=13 Score=37.89 Aligned_cols=88 Identities=18% Similarity=0.179 Sum_probs=54.6
Q ss_pred CEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----CCCCcccEEEe
Q 016981 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWS 232 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~ 232 (379)
.+|+=+||| .++..+++.. +..|+.+|.+++.++.+++ .....+.+|..+.. ..-+..|.+++
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~--------~g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRE--------RGIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--------CCCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 456666555 5555565544 6789999999998888764 24778999988742 12346786654
Q ss_pred ccccCCCCCH--HHHHHHHHHhcCCCCEEEEE
Q 016981 233 MESGEHMPDK--SKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 233 ~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~ 262 (379)
. .+|. ...+-...+...|...++..
T Consensus 488 ~-----~~~~~~~~~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 488 T-----IPNGYEAGEIVASAREKRPDIEIIAR 514 (558)
T ss_pred E-----cCChHHHHHHHHHHHHHCCCCeEEEE
Confidence 2 1222 22233445666777766653
|
|
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=84.04 E-value=14 Score=34.94 Aligned_cols=97 Identities=22% Similarity=0.133 Sum_probs=58.0
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC----CC-C-CCCCcccE
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL----QQ-P-FPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~----~~-~-~~~~~fD~ 229 (379)
++.+||=.|+| .|..+..+++..|. +|++++.++...+.+++ .|...-+.....+.. .+ . .....+|+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~ 252 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGADATIDIDELPDPQRRAIVRDITGGRGADV 252 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCCeEEcCcccccHHHHHHHHHHhCCCCCcE
Confidence 47788888865 35556667777788 89999998877666543 232110111110100 00 0 12246898
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|+-... . ...+....+.|+++|+++....
T Consensus 253 vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 253 VIEASG-----H-PAAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred EEECCC-----C-hHHHHHHHHHhccCCEEEEEcC
Confidence 874321 1 3467788899999999987653
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=83.24 E-value=8.5 Score=36.04 Aligned_cols=94 Identities=21% Similarity=0.215 Sum_probs=58.5
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC---CCCCcccEEEec
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWSM 233 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V~~~ 233 (379)
++.+||=.|+| .|..+..+++..|.+++.++.++...+.+++ .|. . .++...-.+.. .....+|+|+..
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~----~g~-~--~~i~~~~~~~~~~~~~~~~~d~vi~~ 235 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK----LGA-H--HYIDTSKEDVAEALQELGGAKLILAT 235 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----cCC-c--EEecCCCccHHHHHHhcCCCCEEEEC
Confidence 37889988865 3556667777778899999999887777644 222 1 11111101110 001347888742
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
. . ....+..+.+.|+++|+++....
T Consensus 236 ~--g----~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 236 A--P----NAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred C--C----chHHHHHHHHHcccCCEEEEEec
Confidence 1 1 13568888999999999887764
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=83.18 E-value=5.9 Score=33.80 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=49.9
Q ss_pred CEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC--CCCeEEEEccCCCCC---------CCCCcc
Q 016981 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGL--ADKVSFQVGDALQQP---------FPDGQF 227 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~i~~~~~d~~~~~---------~~~~~f 227 (379)
..|+.+|||--.....+.... +..++-+|. |++++.-++.+...+. +.+.+++.+|+.+.. +..+..
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p 158 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP 158 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC
Confidence 489999999988888887754 567888888 5566666666555421 123567888987521 334556
Q ss_pred cEEEeccccCCCC
Q 016981 228 DLVWSMESGEHMP 240 (379)
Q Consensus 228 D~V~~~~~l~~~~ 240 (379)
-++++-+++.+++
T Consensus 159 tl~i~Egvl~Yl~ 171 (183)
T PF04072_consen 159 TLFIAEGVLMYLS 171 (183)
T ss_dssp EEEEEESSGGGS-
T ss_pred eEEEEcchhhcCC
Confidence 6777788888885
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.12 E-value=8.8 Score=36.51 Aligned_cols=97 Identities=16% Similarity=0.127 Sum_probs=57.3
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
++.+||-.|+| .|..+..+++..|.++++++.++.....+.+. .|. ..+ +...+...+.-....+|+|+-.-
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~---~Ga-~~~-i~~~~~~~~~~~~~~~D~vid~~-- 252 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEH---LGA-DDY-LVSSDAAEMQEAADSLDYIIDTV-- 252 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh---cCC-cEE-ecCCChHHHHHhcCCCcEEEECC--
Confidence 47888888765 46667778887788899998887665544332 232 111 11111011100012478776431
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
. . ...+..+.+.|++||+++.....
T Consensus 253 g---~-~~~~~~~~~~l~~~G~iv~~G~~ 277 (357)
T PLN02514 253 P---V-FHPLEPYLSLLKLDGKLILMGVI 277 (357)
T ss_pred C---c-hHHHHHHHHHhccCCEEEEECCC
Confidence 1 1 34677888999999999887643
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=83.07 E-value=13 Score=37.23 Aligned_cols=106 Identities=18% Similarity=0.207 Sum_probs=65.3
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--C---CEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEccCCCC-CC-CCCcccE
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--G---AKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQ-PF-PDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~---~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~-~~-~~~~fD~ 229 (379)
++..|.|..||+|.+.....+.. + ..++|.+..+.+...++.+..-.+.. +......+|-... .+ ....||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 36799999999999887654432 2 46999999999999888875444332 1222223332221 11 2345777
Q ss_pred EEecccc--------------------CC----CCC-HHHHHHHHHHhcCCCCEEEEEe
Q 016981 230 VWSMESG--------------------EH----MPD-KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 230 V~~~~~l--------------------~~----~~~-~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|+++--+ .| ..+ -..++..+..+|++||+..++-
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC 355 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence 7654311 11 111 2467788889999999866654
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.94 E-value=26 Score=31.53 Aligned_cols=76 Identities=20% Similarity=0.219 Sum_probs=49.5
Q ss_pred CCEEEEeCCcccH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C----CCCc
Q 016981 159 PKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F----PDGQ 226 (379)
Q Consensus 159 ~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~----~~~~ 226 (379)
++++|=.|++.|. ++..+++. |.+|+.++.++..++.+.+.+.... ..++.++.+|+.+.. + .-+.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARA-GADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 6788888877654 23334443 7899999999887776665554321 236888889987642 1 1146
Q ss_pred ccEEEecccc
Q 016981 227 FDLVWSMESG 236 (379)
Q Consensus 227 fD~V~~~~~l 236 (379)
.|+++.+...
T Consensus 86 iD~lv~nag~ 95 (263)
T PRK08339 86 PDIFFFSTGG 95 (263)
T ss_pred CcEEEECCCC
Confidence 8988876543
|
|
| >cd05281 TDH Threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=82.94 E-value=16 Score=34.33 Aligned_cols=96 Identities=22% Similarity=0.249 Sum_probs=57.2
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC---CCCCCCCCcccEEEe
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDA---LQQPFPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~fD~V~~ 232 (379)
++.+||-.|+|. |..+..+++..|. .|++++-++.-.+.+++ .|...-+.....+. .+. .+.+.+|+|+.
T Consensus 163 ~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~-~~~~~vd~vld 237 (341)
T cd05281 163 SGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK----MGADVVINPREEDVVEVKSV-TDGTGVDVVLE 237 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHHHHHHH-cCCCCCCEEEE
Confidence 477888777653 6667777877777 78888877766665553 22210011111111 011 12346899875
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.-. ....+.++.+.|+++|+++....
T Consensus 238 ~~g------~~~~~~~~~~~l~~~G~~v~~g~ 263 (341)
T cd05281 238 MSG------NPKAIEQGLKALTPGGRVSILGL 263 (341)
T ss_pred CCC------CHHHHHHHHHHhccCCEEEEEcc
Confidence 321 13467888899999999887653
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=82.74 E-value=6.4 Score=36.52 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=53.3
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
.+.+|+=+|.|. |..+...++..|++|+.+|.++...+.++. .| ..+. +..++...-..+|+|+..-
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~----~G----~~~~--~~~~l~~~l~~aDiVI~t~-- 218 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE----MG----LSPF--HLSELAEEVGKIDIIFNTI-- 218 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cC----Ceee--cHHHHHHHhCCCCEEEECC--
Confidence 478999999874 344444445558899999999876555433 22 2222 1112111124689998742
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+. .-+-++..+.++||+.++-..
T Consensus 219 ---p~-~~i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 219 ---PA-LVLTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred ---Ch-hhhhHHHHHcCCCCcEEEEEc
Confidence 11 123356677899988766443
|
|
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=82.73 E-value=13 Score=34.51 Aligned_cols=89 Identities=17% Similarity=0.179 Sum_probs=56.4
Q ss_pred CCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+||=.|||. |..+..+++..|.+++.++.++...+.+++ .|. .... +.... +...+|+++....
T Consensus 168 ~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~----~~~~-~~~~~--~~~~vD~vi~~~~-- 234 (329)
T cd08298 168 GQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE----LGA----DWAG-DSDDL--PPEPLDAAIIFAP-- 234 (329)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH----hCC----cEEe-ccCcc--CCCcccEEEEcCC--
Confidence 77888787653 344555666668899999998877666643 232 1111 11111 2345888774321
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
....+.++.+.|+++|++++...
T Consensus 235 ----~~~~~~~~~~~l~~~G~~v~~g~ 257 (329)
T cd08298 235 ----VGALVPAALRAVKKGGRVVLAGI 257 (329)
T ss_pred ----cHHHHHHHHHHhhcCCEEEEEcC
Confidence 13468899999999999997653
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.71 E-value=22 Score=31.96 Aligned_cols=103 Identities=16% Similarity=0.087 Sum_probs=59.8
Q ss_pred CCCEEEEeCCccc-HHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----------CC
Q 016981 158 RPKNVVDVGCGIG-GSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FP 223 (379)
Q Consensus 158 ~~~~vLDiGcGtG-~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 223 (379)
.++.+|-.|+++| ..+..+++++ |.+|+.++.+....+.+++..... ..+.++.+|+.+.. -.
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL---DAPIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh---ccceEEecCcCCHHHHHHHHHHHHHH
Confidence 3678999998762 5555555544 789988888765433333332222 13456778876531 01
Q ss_pred CCcccEEEeccccCC-------CC--C---HHH-----------HHHHHHHhcCCCCEEEEEe
Q 016981 224 DGQFDLVWSMESGEH-------MP--D---KSK-----------FVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 224 ~~~fD~V~~~~~l~~-------~~--~---~~~-----------~l~~~~r~LkpgG~l~i~~ 263 (379)
-+..|+++.+-.+.. +. + +.. +.+.+...++.+|.++...
T Consensus 86 ~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~is 148 (258)
T PRK07533 86 WGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMS 148 (258)
T ss_pred cCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 257899987755432 11 1 111 3455667777788876654
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=82.51 E-value=2.6 Score=39.37 Aligned_cols=64 Identities=23% Similarity=0.255 Sum_probs=49.3
Q ss_pred EEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC---CCCCcccEEEec
Q 016981 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWSM 233 (379)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V~~~ 233 (379)
+++|+=||.|.+..-+....-..+.++|+++.+.+.-+.++. .....|+.++. ++. .+|+++..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEec
Confidence 799999999999998887632468899999999998888762 67888988764 443 59999864
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >COG4017 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=82.40 E-value=14 Score=31.67 Aligned_cols=85 Identities=20% Similarity=0.248 Sum_probs=57.6
Q ss_pred CCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+||=+|.= ||.....+... ..+|+.+|+.|.|-.. +|+++.|... +-+..+.+|+|+-.-.+.
T Consensus 45 ~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~---------lp~~v~Fr~~----~~~~~G~~DlivDlTGlG 110 (254)
T COG4017 45 FKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGF---------LPNNVKFRNL----LKFIRGEVDLIVDLTGLG 110 (254)
T ss_pred cceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhc---------CCCCccHhhh----cCCCCCceeEEEeccccC
Confidence 7889999864 67666665554 6799999999987554 5678887644 334568899999877776
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
-+. .++ .+-+.|+ .+++-+.
T Consensus 111 G~~--Pe~----L~~fnp~-vfiVEdP 130 (254)
T COG4017 111 GIE--PEF----LAKFNPK-VFIVEDP 130 (254)
T ss_pred CCC--HHH----HhccCCc-eEEEECC
Confidence 652 222 3445565 4445444
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.39 E-value=16 Score=32.71 Aligned_cols=73 Identities=16% Similarity=0.176 Sum_probs=46.7
Q ss_pred CEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CC------CC
Q 016981 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP------DG 225 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~------~~ 225 (379)
+++|-.|++. .++..+++.+ |.+|+.++.++..++...+... ..++.++.+|+.+.. +. .+
T Consensus 2 k~vlItGasg-~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 76 (260)
T PRK08267 2 KSIFITGAAS-GIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATGG 76 (260)
T ss_pred cEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 3577777654 4444444433 7899999998876665544332 136888999987632 10 35
Q ss_pred cccEEEeccccC
Q 016981 226 QFDLVWSMESGE 237 (379)
Q Consensus 226 ~fD~V~~~~~l~ 237 (379)
.+|+|+.+....
T Consensus 77 ~id~vi~~ag~~ 88 (260)
T PRK08267 77 RLDVLFNNAGIL 88 (260)
T ss_pred CCCEEEECCCCC
Confidence 689998765543
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=82.26 E-value=4.2 Score=39.10 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=34.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAA 202 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~ 202 (379)
+++||-|.+|......++.+. ..+|++||++|.++...+-+.+
T Consensus 36 ~d~vl~ItSaG~N~L~yL~~~-P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 36 DDRVLTITSAGCNALDYLLAG-PKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCeEEEEccCCchHHHHHhcC-CceEEEEeCCHHHHHHHHHHHH
Confidence 899999987776666666654 7899999999999988776654
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=82.22 E-value=4.4 Score=38.73 Aligned_cols=108 Identities=18% Similarity=0.192 Sum_probs=72.3
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC-CCCCeEEEEccCCCCC--------------
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG-LADKVSFQVGDALQQP-------------- 221 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~i~~~~~d~~~~~-------------- 221 (379)
.+.++||.+|+.+.....+++.+ ..+--|+++....+..+..+....+ ...+..+..+|+...+
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~ 259 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFG 259 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhcc
Confidence 46799999999999999999877 3456688888887777665433211 1123444444433211
Q ss_pred ---------------CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCC
Q 016981 222 ---------------FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268 (379)
Q Consensus 222 ---------------~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 268 (379)
++...+|. ..++.|+.+...++......++|+|.+.+.+.....
T Consensus 260 ~~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~~~ 318 (364)
T KOG1269|consen 260 FEHLKLEKDLALKSSFPWNTPLT---RDTITHWQDKSALFRGRVATLKPGGKVLILEYIRGL 318 (364)
T ss_pred chhhhhcccccCCCccccccccc---hhheeecccccHHHHhHhhccCcCceEEehhhcCcC
Confidence 12233444 455667777778889999999999999998876543
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.12 E-value=11 Score=35.80 Aligned_cols=98 Identities=20% Similarity=0.250 Sum_probs=59.4
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC--CC-C-CCCCCcccEEE
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDA--LQ-Q-PFPDGQFDLVW 231 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~--~~-~-~~~~~~fD~V~ 231 (379)
++.+||=+|+| .|..+..+++..|. +|+++|.++...+.+++ .|...-+.....+. .+ . ....+.+|+|+
T Consensus 184 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vi 259 (365)
T cd08277 184 PGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMTGGGVDYSF 259 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHhCCCCCEEE
Confidence 48899988875 35566677777777 79999999988887754 23210011111000 00 0 01124589887
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCC-CEEEEEecc
Q 016981 232 SMESGEHMPDKSKFVSELARVTAPA-GTIIIVTWC 265 (379)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~i~~~~ 265 (379)
-.- .. ...+....+.|+++ |++++....
T Consensus 260 d~~-----g~-~~~~~~~~~~l~~~~G~~v~~g~~ 288 (365)
T cd08277 260 ECT-----GN-ADLMNEALESTKLGWGVSVVVGVP 288 (365)
T ss_pred ECC-----CC-hHHHHHHHHhcccCCCEEEEEcCC
Confidence 421 11 35678888899886 999887643
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.66 E-value=17 Score=33.44 Aligned_cols=102 Identities=19% Similarity=0.150 Sum_probs=58.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHH-HHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CC-----C
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPV-QAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~ 224 (379)
+++||-.|++.| ++..+++++ |.+|+.++.+.. ..+.....+...+ .++.++.+|+.+.. +. -
T Consensus 46 ~k~iLItGasgg-IG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 46 GKVALITGGDSG-IGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 678888886554 344444433 789998887642 3333333343333 36778889987632 10 1
Q ss_pred CcccEEEeccccCCC----CC----------------HHHHHHHHHHhcCCCCEEEEEe
Q 016981 225 GQFDLVWSMESGEHM----PD----------------KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 225 ~~fD~V~~~~~l~~~----~~----------------~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.+|+|+.+...... .+ ...+++.+.+.++++|.+++..
T Consensus 123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 467988865443221 11 1234555666677788877655
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.59 E-value=27 Score=31.72 Aligned_cols=99 Identities=20% Similarity=0.223 Sum_probs=60.8
Q ss_pred CEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C----CCCccc
Q 016981 160 KNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F----PDGQFD 228 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~----~~~~fD 228 (379)
+.+|=-|+ |.++..+++.+ |.+|+.+|.++..++.+.+.+...+ .++.++.+|+.+.. + ..+.+|
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 34555564 45777777666 7899999998876665555554433 36778888987632 1 125689
Q ss_pred EEEeccccCCC-CCHH-----------HHHHHHHHhcCCCCEEEEE
Q 016981 229 LVWSMESGEHM-PDKS-----------KFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 229 ~V~~~~~l~~~-~~~~-----------~~l~~~~r~LkpgG~l~i~ 262 (379)
+++.+-.+... .++. .+++.+.+.++++|.+++.
T Consensus 79 ~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~i 124 (275)
T PRK06940 79 GLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVI 124 (275)
T ss_pred EEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEE
Confidence 99877654332 2222 2455566666777765443
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.57 E-value=25 Score=31.68 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=47.4
Q ss_pred EEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-C---------CCCcc
Q 016981 161 NVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-F---------PDGQF 227 (379)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~---------~~~~f 227 (379)
+||-.|+ +|.++..+++.+ |.+|+.++.+...++.+...+...+ .++.+..+|+.+.. . ..+.+
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i 78 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWGGI 78 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 5776775 444455554444 7899999998877666555554433 46778888987632 0 11468
Q ss_pred cEEEeccccC
Q 016981 228 DLVWSMESGE 237 (379)
Q Consensus 228 D~V~~~~~l~ 237 (379)
|+|+.+....
T Consensus 79 d~lI~~ag~~ 88 (270)
T PRK05650 79 DVIVNNAGVA 88 (270)
T ss_pred CEEEECCCCC
Confidence 9998776543
|
|
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.10 E-value=12 Score=35.54 Aligned_cols=98 Identities=16% Similarity=0.205 Sum_probs=59.4
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc--cCCC-C-CCCCCcccEEE
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVG--DALQ-Q-PFPDGQFDLVW 231 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~--d~~~-~-~~~~~~fD~V~ 231 (379)
++.+||=.|+| .|..+..+++..|. +|+++|.++...+.+++ .|...-+..... +..+ + ....+.+|+|+
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vi 262 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSF 262 (369)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHhCCCCCEEE
Confidence 48899999875 35566777777777 79999999988887754 232100111100 0000 0 01123588887
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCC-CEEEEEecc
Q 016981 232 SMESGEHMPDKSKFVSELARVTAPA-GTIIIVTWC 265 (379)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~i~~~~ 265 (379)
-.- .. ...+....+.+++| |++++....
T Consensus 263 d~~-----G~-~~~~~~~~~~~~~~~g~~v~~g~~ 291 (369)
T cd08301 263 ECT-----GN-IDAMISAFECVHDGWGVTVLLGVP 291 (369)
T ss_pred ECC-----CC-hHHHHHHHHHhhcCCCEEEEECcC
Confidence 431 11 45677788899996 999887654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=81.09 E-value=24 Score=32.47 Aligned_cols=102 Identities=21% Similarity=0.207 Sum_probs=59.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHH--HHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----C
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPV--QAQRANALAAARGLADKVSFQVGDALQQP-----F-----P 223 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~--~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~ 223 (379)
+++||=.|++. .++..+++.+ |.+|+.+..+.. ..+...+.+...+ .++.++.+|+.+.. + .
T Consensus 55 ~k~vlITGas~-gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 55 GRKALITGADS-GIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CCEEEEecCCC-cHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 67889888654 4445555444 788887766432 2233333333333 35778888987631 1 0
Q ss_pred CCcccEEEeccccCC----CCC-----H-----------HHHHHHHHHhcCCCCEEEEEe
Q 016981 224 DGQFDLVWSMESGEH----MPD-----K-----------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 224 ~~~fD~V~~~~~l~~----~~~-----~-----------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
-+..|+++.+-.... +.+ + ..+++.+.+.++++|.++...
T Consensus 132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~s 191 (300)
T PRK06128 132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTG 191 (300)
T ss_pred hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEEC
Confidence 146899987765422 111 1 135566667778888877754
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.02 E-value=27 Score=30.90 Aligned_cols=77 Identities=21% Similarity=0.144 Sum_probs=50.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 225 (379)
+.+||=.|. +|.++..+++++ |.+|++++-++...+.........+ .++.++.+|+.+.. + ..+
T Consensus 4 ~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 4 GKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 567776665 566677766655 7799999998877666555554433 46888889987531 0 113
Q ss_pred cccEEEeccccCC
Q 016981 226 QFDLVWSMESGEH 238 (379)
Q Consensus 226 ~fD~V~~~~~l~~ 238 (379)
.+|+|+.+....+
T Consensus 81 ~~d~vi~~a~~~~ 93 (258)
T PRK12429 81 GVDILVNNAGIQH 93 (258)
T ss_pred CCCEEEECCCCCC
Confidence 5899987655433
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=80.98 E-value=12 Score=32.72 Aligned_cols=71 Identities=30% Similarity=0.353 Sum_probs=46.9
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHH-HHHHHHHHHHHcCCCCCeEEEEccCCCC-----------CC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPV-QAQRANALAAARGLADKVSFQVGDALQQ-----------PF 222 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----------~~ 222 (379)
....||-.||..|..+..+++.+ |..|+++--+-+ |-+.+.+ . .+.....|+.+. .+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~----~----gl~~~kLDV~~~~~V~~v~~evr~~ 77 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ----F----GLKPYKLDVSKPEEVVTVSGEVRAN 77 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh----h----CCeeEEeccCChHHHHHHHHHHhhC
Confidence 36789999999999999988877 778888754432 3333222 1 345556666542 24
Q ss_pred CCCcccEEEecccc
Q 016981 223 PDGQFDLVWSMESG 236 (379)
Q Consensus 223 ~~~~fD~V~~~~~l 236 (379)
++++.|+.+.+...
T Consensus 78 ~~Gkld~L~NNAG~ 91 (289)
T KOG1209|consen 78 PDGKLDLLYNNAGQ 91 (289)
T ss_pred CCCceEEEEcCCCC
Confidence 67888888865433
|
|
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.96 E-value=4.2 Score=38.81 Aligned_cols=94 Identities=16% Similarity=0.184 Sum_probs=59.5
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC----C-CCCCCcccEE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ----Q-PFPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~----~-~~~~~~fD~V 230 (379)
++.+||=.|+|. |..+..+++..|. .++++|.++...+.+++ .+. ..++..+-.. + ......+|+|
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~---~~~i~~~~~~~~~~v~~~~~~~~d~v 258 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGA---THVINPKEEDLVAAIREITGGGVDYA 258 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCC---cEEecCCCcCHHHHHHHHhCCCCcEE
Confidence 478898888754 6677777877777 69999999887776654 221 1111111111 0 0113458988
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+-... . ...+..+.+.|+++|+++....
T Consensus 259 ld~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 259 LDTTG-----V-PAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred EECCC-----C-cHHHHHHHHHhccCCEEEEeCc
Confidence 75321 1 2457888999999999887653
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=80.91 E-value=23 Score=33.35 Aligned_cols=123 Identities=16% Similarity=0.124 Sum_probs=76.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC---CCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V~~~~~ 235 (379)
..+++|+=||.|.+..-+....-.-+.++|+++.+++.-+.++. ...+...|+.... +....+|+++...-
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~------~~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP------HGDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC------CCceeechHhhcChhhccccCCCEEEeCCC
Confidence 56899999999999877777632357789999999988777653 2445566665442 21116899886433
Q ss_pred cCCC---------CCHH----HHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHH
Q 016981 236 GEHM---------PDKS----KFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADY 302 (379)
Q Consensus 236 l~~~---------~~~~----~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (379)
-..+ .|+. --+.++...++| .+++.+-+. .++.. . ....+.+
T Consensus 77 CQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~---------------gl~~~-----~---~~~~~~i 131 (328)
T COG0270 77 CQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVK---------------GLLSS-----K---GQTFDEI 131 (328)
T ss_pred CcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCc---------------hHHhc-----C---chHHHHH
Confidence 3222 2321 234556667788 555555221 11111 0 1256788
Q ss_pred HHHHHhCCCc
Q 016981 303 VKLLQSLSLE 312 (379)
Q Consensus 303 ~~~l~~aGF~ 312 (379)
.+.|++.||.
T Consensus 132 ~~~L~~~GY~ 141 (328)
T COG0270 132 KKELEELGYG 141 (328)
T ss_pred HHHHHHcCCc
Confidence 8999999986
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=80.81 E-value=7.1 Score=35.46 Aligned_cols=63 Identities=17% Similarity=0.147 Sum_probs=40.5
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF------GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 221 (379)
+...++|+|||.|.++.+++... ...++.||-...-. .+-.++........+.=+..|+.++.
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccc
Confidence 37799999999999999999876 24788999754322 33333333221124555566766653
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.32 E-value=9.5 Score=35.98 Aligned_cols=98 Identities=19% Similarity=0.157 Sum_probs=59.5
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-C-C-CCCCcccEEEe
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q-P-FPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~-~~~~~fD~V~~ 232 (379)
++.+||=.|+| .|..+..+++..|. .|++++.++...+.+++. |...-+.....+..+ + . ...+.+|+|+-
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid 247 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GATIVLDPTEVDVVAEVRKLTGGGGVDVSFD 247 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEECCCccCHHHHHHHHhCCCCCCEEEE
Confidence 37888888764 35566677777787 899999998887777542 321001111111100 0 0 12234899875
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
... ....+..+.+.|+++|+++.....
T Consensus 248 ~~g------~~~~~~~~~~~l~~~G~~v~~g~~ 274 (351)
T cd08233 248 CAG------VQATLDTAIDALRPRGTAVNVAIW 274 (351)
T ss_pred CCC------CHHHHHHHHHhccCCCEEEEEccC
Confidence 321 134678889999999998887643
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 379 | ||||
| 3bus_A | 273 | Crystal Structure Of Rebm Length = 273 | 1e-19 | ||
| 2o57_A | 297 | Crystal Structure Of A Putative Sarcosine Dimethylg | 3e-15 | ||
| 3ujd_A | 266 | Phosphoethanolamine Methyltransferase Mutant (Y19f) | 1e-11 | ||
| 3uj7_A | 266 | Phosphoethanolamine Methyltransferase From Plasmodi | 1e-11 | ||
| 3uj6_A | 266 | Semet Phosphoethanolamine Methyltransferase From Pl | 2e-11 | ||
| 3ujc_A | 266 | Phosphoethanolamine Methyltransferase Mutant (H132a | 7e-11 | ||
| 3vc1_A | 312 | Crystal Structure Of Geranyl Diphosphate C-Methyltr | 4e-08 | ||
| 4f84_A | 320 | Structure Analysis Of Geranyl Diphosphate Methyltra | 1e-07 | ||
| 1ve3_A | 227 | Crystal Structure Of Ph0226 Protein From Pyrococcus | 4e-06 | ||
| 1vl5_A | 260 | Crystal Structure Of A Putative Methyltransferase ( | 4e-05 | ||
| 1xxl_A | 239 | The Crystal Structure Of Ycgj Protein From Bacillus | 7e-05 | ||
| 3mgg_A | 276 | Crystal Structure Of Methyl Transferase From Methan | 2e-04 | ||
| 3f4k_A | 257 | Crystal Structure Of A Probable Methyltransferase F | 3e-04 | ||
| 3svz_A | 263 | Crystal Structure Of Apo Bt_2972, A Methyltransfera | 3e-04 |
| >pdb|3BUS|A Chain A, Crystal Structure Of Rebm Length = 273 | Back alignment and structure |
|
| >pdb|2O57|A Chain A, Crystal Structure Of A Putative Sarcosine Dimethylglycine Methyltransferase From Galdieria Sulphuraria Length = 297 | Back alignment and structure |
|
| >pdb|3UJD|A Chain A, Phosphoethanolamine Methyltransferase Mutant (Y19f) From Plasmodium Falciparum In Complex With Phosphocholine Length = 266 | Back alignment and structure |
|
| >pdb|3UJ7|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium Falciparum In Complex With Sam And Po4 Length = 266 | Back alignment and structure |
|
| >pdb|3UJ6|A Chain A, Semet Phosphoethanolamine Methyltransferase From Plasmodium Falciparum In Complex With Sam And Po4 Length = 266 | Back alignment and structure |
|
| >pdb|3UJC|A Chain A, Phosphoethanolamine Methyltransferase Mutant (H132a) From Plasmodium Falciparum In Complex With Phosphocholine Length = 266 | Back alignment and structure |
|
| >pdb|3VC1|A Chain A, Crystal Structure Of Geranyl Diphosphate C-Methyltransferase From Streptomyces Coelicolor A3(2) In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And S-Adenosyl-L-Homocysteine Length = 312 | Back alignment and structure |
|
| >pdb|4F84|A Chain A, Structure Analysis Of Geranyl Diphosphate Methyltransferase In Complex With Sam Length = 320 | Back alignment and structure |
|
| >pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus Horikoshii Ot3 Length = 227 | Back alignment and structure |
|
| >pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331) From Bacillus Halodurans C-125 At 1.95 A Resolution Length = 260 | Back alignment and structure |
|
| >pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus Subitilis At 2.1 A Resolution Length = 239 | Back alignment and structure |
|
| >pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From Methanosarcina Mazei Length = 276 | Back alignment and structure |
|
| >pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From Bacteroides Thetaiotaomicron. Northeast Structural Genomics Target Btr309 Length = 257 | Back alignment and structure |
|
| >pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From Bacteroides Thetaiotaomicron Length = 263 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 268 bits (688), Expect = 4e-89
Identities = 67/240 (27%), Positives = 107/240 (44%), Gaps = 13/240 (5%)
Query: 92 ARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGV 151
A E + + YD+ + + IWG+++H G++E + A R+ +E + V
Sbjct: 2 AAPTPEEVRQMYDDFTDPFARIWGENLHFGYWEDAGADV--SVDDATDRLTDEMIALLDV 59
Query: 152 SEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVS 211
V+DVGCGIG + LA + GI++S Q +ANA A A GLA++V+
Sbjct: 60 RSG-----DRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVT 114
Query: 212 FQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
F DA+ PF D FD VW++ES HMPD+ + + E+ARV P GT+ I +
Sbjct: 115 FSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVE 174
Query: 272 SEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVI 331
++E + + + +Y ++ L D S P
Sbjct: 175 ------GAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVDISAQARPSLVKTA 228
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 261 bits (668), Expect = 8e-86
Identities = 61/260 (23%), Positives = 107/260 (41%), Gaps = 15/260 (5%)
Query: 82 TSTTTMSDAAARELKEGIAEFYD--ESSSLWEDIWGD-HMHHGFYEPDSSVSVSDHRAAQ 138
++ + A ++ +K+ +YD +S + +WG +H G Y+ + R A
Sbjct: 6 SNGQSQPAATSKTVKDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQD--EIREAS 63
Query: 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRAN 198
+R E ++ +R +D+G G GG++R+L +KFG + ++PVQ +R
Sbjct: 64 LRTDEWLASELAMT-GVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNE 122
Query: 199 ALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGT 258
GLAD ++ + G L+ P D +D +WS ++ H PDK K E ARV P G
Sbjct: 123 EYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGV 182
Query: 259 IIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318
+ I D ++ I D L S Y L + L ++
Sbjct: 183 MAITDPMKEDGIDKSS---------IQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFS 233
Query: 319 WSQNVAPFWPAVIHSALTWK 338
++ + V +
Sbjct: 234 RPDSLVHHYSKVKAELIKRS 253
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 243 bits (621), Expect = 2e-78
Identities = 74/325 (22%), Positives = 122/325 (37%), Gaps = 52/325 (16%)
Query: 71 SRKLITRASSTTSTTTMSDAAARELKEGIAEFYDESSSLWEDIWGD-----HMHHGFYEP 125
+T ++T + T A A +E IA +++ + GD H H+G
Sbjct: 17 RGSHMTTETTTATATAKIPAPATPYQEDIARYWNNEARPVNLRLGDVDGLYHHHYGIGPV 76
Query: 126 DSSV---------------SVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIG 170
D + + +AQ + + L AG P +VD GCG G
Sbjct: 77 DRAALGDPEHSEYEKKVIAELHRLESAQAEFLMDHLGQAG----PDDT---LVDAGCGRG 129
Query: 171 GSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLV 230
GS ++FG++ +G+TLS QA N A + D V +V + L PF G
Sbjct: 130 GSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTAS 189
Query: 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA 290
W+ ES ++ D SE +R G + +T C W ++ +A
Sbjct: 190 WNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQP---SKWVSQI-----NA 240
Query: 291 YYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALT---WKGFTSLLRTG 347
++ S +Y++ + L D + + P+W S+L K F R G
Sbjct: 241 HFECNIHSRREYLRAMADNRLVPHTIVDLTPDTLPYWELRATSSLVTGIEKAFIESYRDG 300
Query: 348 KLSILCCWNLYVISYNYLDISAKRL 372
S+ Y+ I+A R+
Sbjct: 301 -------------SFQYVLIAADRV 312
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 210 bits (535), Expect = 3e-66
Identities = 47/256 (18%), Positives = 104/256 (40%), Gaps = 34/256 (13%)
Query: 85 TTMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEE 144
T + + + + ++ DE ++E I+G++ + + ++
Sbjct: 2 TLIENLNSDKTFLENNQYTDEGVKVYEFIFGENYIS---------------SGGLEATKK 46
Query: 145 TLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204
L ++E+ V+D+G G+GG Y+ +K+GA GI + AN
Sbjct: 47 ILSDIELNEN-----SKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERV--- 98
Query: 205 GLADKVSFQVGDALQQPFPDGQFDLVWSMES--GEHMPDKSKFVSELARVTAPAGTIIIV 262
+K+ F+ D L + FP+ FDL++S ++ + +K+K + + P GT++I
Sbjct: 99 SGNNKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLIT 158
Query: 263 TWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQN 322
+C + + W+ E + + Y + +Y +L + + +++ ++D S
Sbjct: 159 DYCATE-------KENWDDEFKEYVKQRKY--TLITVEEYADILTACNFKNVVSKDLSDY 209
Query: 323 VAPFWPAVIHSALTWK 338
K
Sbjct: 210 WNQLLEVEHKYLHENK 225
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 164 bits (416), Expect = 2e-48
Identities = 35/230 (15%), Positives = 67/230 (29%), Gaps = 32/230 (13%)
Query: 94 ELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSE 153
+ I +F I + P S ++ +
Sbjct: 3 NENKTIHDFE------LNLICDFFSNMERQGPGS-------PEVTLKALSFI-------- 41
Query: 154 DPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213
D + D+GCG GG + LA + G+ N A GL ++V+
Sbjct: 42 DNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGI 101
Query: 214 VGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSE 273
VG PF + + DL+WS + ++ + + ++E + G + +
Sbjct: 102 VGSMDDLPFRNEELDLIWSEGAIYNIGFE-RGLNEWRKYLKKGGYLAVSECSWFTDERPA 160
Query: 274 ESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNV 323
E W P + + V + + +N
Sbjct: 161 EINDFWMDA----------YPEIDTIPNQVAKIHKAGYLPVATFILPENC 200
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 160 bits (405), Expect = 4e-47
Identities = 38/203 (18%), Positives = 64/203 (31%), Gaps = 18/203 (8%)
Query: 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAA 202
E T + + T K + D+GCG GG + +LA + GI L P + N A
Sbjct: 32 EATRKAVSFINELTDDAK-IADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAV 90
Query: 203 ARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262
AD+V G PF + + DL+WS + ++ + + ++E ++ G I +
Sbjct: 91 KANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFE-RGMNEWSKYLKKGGFIAVS 149
Query: 263 TWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQN 322
E W P + ++ +N
Sbjct: 150 EASWFTSERPAEIEDFWMDA----------YPEISVIPTCIDKMERAGYTPTAHFILPEN 199
Query: 323 ------VAPFWPAVIHSALTWKG 339
AP G
Sbjct: 200 CWTEHYFAPQDEVRETFMKEHAG 222
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 9e-42
Identities = 36/175 (20%), Positives = 65/175 (37%), Gaps = 10/175 (5%)
Query: 154 DPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213
+ + K V+D G G + + G K GI +S +Q ++A + K++
Sbjct: 19 NESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF--KLNIS 76
Query: 214 VGDALQQPFPDGQFDLVWSMESGEHM--PDKSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
GD + PF D V+S + HM D + + E+ RV P G I +D
Sbjct: 77 KGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKD--E 134
Query: 272 SEESLQPWEQELLKKICDAYYLP-AWCSTADYVKLLQS---LSLEDIKAEDWSQN 322
+ + ++ + ++ S + K + L ED E +
Sbjct: 135 RYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKEDRVVERINDG 189
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 3e-41
Identities = 38/237 (16%), Positives = 72/237 (30%), Gaps = 34/237 (14%)
Query: 95 LKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSED 154
+ E +F + + ++I + + E + G+
Sbjct: 2 MSENKKKFDKKGAKNMDEISKTLFAPIY----------------PIIAENIINRFGI--- 42
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
+D+G G G S LAK+ + + S + A A L D++
Sbjct: 43 ---TAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQ 99
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE 274
GD P D DL+ S S D + E+ R+ G I ++E
Sbjct: 100 GDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIG-----GGFGNKE 154
Query: 275 SLQPWEQELLKKICDAYYLPA----WCSTADYVKLLQSLSLEDIKAEDWSQNVAPFW 327
E+++K D + + +L + + + + FW
Sbjct: 155 LRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIILGDEG---FW 208
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 133 bits (335), Expect = 4e-37
Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 30/193 (15%)
Query: 98 GIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTK 157
G E+Y + + ++ +++ +E L K
Sbjct: 2 GFKEYYRVFPTYTDINSQEYR------------------SRIETLEPLLMKYM------K 37
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217
+ V+D+ CG+GG S L +G + G+ +S ++A A +R V F VGDA
Sbjct: 38 KRGKVLDLACGVGGFSFLLED-YGFEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDA 94
Query: 218 LQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPS-EE 274
+ F D FD V ++S H + ++ E+ RV P+G I+ R+L P +E
Sbjct: 95 RKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKE 154
Query: 275 SLQPWEQELLKKI 287
SL ++ + K+
Sbjct: 155 SLVVGQKYWISKV 167
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 1e-36
Identities = 47/257 (18%), Positives = 94/257 (36%), Gaps = 44/257 (17%)
Query: 86 TMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEET 145
M+ E + +D S+ W + ++ S R+ + E+
Sbjct: 6 CMTK---FNWHESAEKKWDSSAEFW-----NQNSQEMWD-------SGSRSTIIPFFEQY 50
Query: 146 LRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG 205
+ K+ V+DVGCG G + L++ G K G+ +S V Q+ RG
Sbjct: 51 V----------KKEAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVMIQKGKE----RG 95
Query: 206 LADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265
+SF GD PF + QF+ + ++ S E + + ++E+ RV G I
Sbjct: 96 EGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILG 155
Query: 266 HRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED-----WS 320
P+ + + L K + W ++ +L++ + + +
Sbjct: 156 -----PTAKPRENSYPRLYGKDVVCNTMMPW----EFEQLVKEQGFKVVDGIGVYKRGVN 206
Query: 321 QNVAPFWPAVIHSALTW 337
+ + + +LT+
Sbjct: 207 EKMLGQLSTDLQQSLTF 223
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 4e-35
Identities = 49/210 (23%), Positives = 77/210 (36%), Gaps = 11/210 (5%)
Query: 120 HGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKK 179
HG+ E ++ + Q +E+ L P + V++ GCGIG + LAK
Sbjct: 8 HGYSEREA-----LRLSEQAETLEKLL-HHDTVYPPGAK---VLEAGCGIGAQTVILAKN 58
Query: 180 F-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238
A+ I +SP ++A G+ + V F + PF D FD ++ EH
Sbjct: 59 NPDAEITSIDISPESLEKARENTEKNGIKN-VKFLQANIFSLPFEDSSFDHIFVCFVLEH 117
Query: 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298
+ + + L +V P GTI ++ H E + E AY
Sbjct: 118 LQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLV 177
Query: 299 TADYVKLLQSLSLEDIKAEDWSQNVAPFWP 328
LLQ E I+ E + P
Sbjct: 178 GRQIYPLLQESGFEKIRVEPRMVYIDSSKP 207
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 2e-33
Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 23/209 (11%)
Query: 127 SSVSVSDHR---AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAK 183
++S S+HR R + ++D+G G G A+ G
Sbjct: 7 FTISESEHRIHNPFTEEKYATLGRVLRMKPGTR-----ILDLGSGSGEMLCTWARDHGIT 61
Query: 184 CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKS 243
GI +S + +A A G++++V F DA + + D+ + + +
Sbjct: 62 GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV-ANEKCDVAACVGATWIAGGFA 120
Query: 244 KFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYV 303
LA+ P G ++I R L +EE Q + + V
Sbjct: 121 GAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACG------VSSTSDFL---TLPGLV 171
Query: 304 KLLQSLSLEDIKA-----EDWSQNVAPFW 327
L + ++ E W + A W
Sbjct: 172 GAFDDLGYDVVEMVLADQEGWDRYEAAKW 200
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 110 bits (275), Expect = 8e-28
Identities = 46/233 (19%), Positives = 73/233 (31%), Gaps = 31/233 (13%)
Query: 114 WGDHMHHGFYEPDSSVSVSDHRAAQV-RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGS 172
+ FYE +V + R R ++ LR P V V CG
Sbjct: 83 ALAPLERVFYERLPAVLATRERHGHFRRALQRHLR-------PGCV---VASVPCGWMSE 132
Query: 173 SRYLAKKFGAKCQ--GITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLV 230
L Q GI P A LAA LA +++ DA + + +DL+
Sbjct: 133 LLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTRE-GYDLL 191
Query: 231 WSMESGEHMPDKSKFVS---ELARVTAPAGTIIIVTWCHRDLAPSEESLQPWE------- 280
S + PD ++ + P G ++ P+ PW+
Sbjct: 192 TSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP---PPALSPDSPWDMQAIDPH 248
Query: 281 ----QELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPA 329
Q+L+ A + A L+ D++ ED + P A
Sbjct: 249 DLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDDRARLFPTVIA 301
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 2e-27
Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 9/157 (5%)
Query: 119 HHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAK 178
F+ S + S +VD+GCG G R+ +
Sbjct: 9 QPDFFAGYSQLGRSIEGLDGAAEWPALRAMLPE-----VGGLRIVDLGCGFGWFCRWAHE 63
Query: 179 KFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238
+ G+ LS RA A G ++++ D + P FDL +S + +
Sbjct: 64 HGASYVLGLDLSEKMLARARAAGPDTG----ITYERADLDKLHLPQDSFDLAYSSLALHY 119
Query: 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEES 275
+ D ++ + + +P G + T +AP+
Sbjct: 120 VEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPG 156
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 3e-26
Identities = 36/222 (16%), Positives = 76/222 (34%), Gaps = 17/222 (7%)
Query: 76 TRASSTTSTTTMSDAAARELKEGIAEFYDESSSLWEDIWG--DHMHHGFYEPDSSVSVSD 133
+ S+ + + E+ E +FY ++ + W+ I D M G+ +S
Sbjct: 4 SHHHHHHSSGLVPRGSTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGY------GHISS 57
Query: 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQ 193
R + G ++ T +D G GIG ++ L + + ++
Sbjct: 58 IDINSSRKFLQRFLREGPNKTGTSC---ALDCGAGIGRITKRLLLPLFREVDMVDITEDF 114
Query: 194 AQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELAR 251
+A G ++ +D++W H+ D+ ++F+
Sbjct: 115 LVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKG 173
Query: 252 VTAPAGTIIIVTWCHRD---LAPSEESLQPWEQELLKKICDA 290
P G I+I ++ L + S+ + + IC A
Sbjct: 174 SLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSA 215
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 4e-26
Identities = 42/190 (22%), Positives = 78/190 (41%), Gaps = 17/190 (8%)
Query: 130 SVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL 189
+ H + MI+ A + V+D+G G G ++ + +C G+
Sbjct: 2 AHHHHHHSLGLMIK----TAEC-----RAEHRVLDIGAGAGHTALAFSPY-VQECIGVDA 51
Query: 190 SPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSEL 249
+ + A++ A +G+ + V FQ G A PFPD FD++ + H D K V E+
Sbjct: 52 TKEMVEVASSFAQEKGV-ENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREV 110
Query: 250 ARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL 309
ARV G ++V AP + L + L + ++ + S +++ + +
Sbjct: 111 ARVLKQDGRFLLVDHY----APEDPVLDEFVNHLNRLRDPSHVRES--SLSEWQAMFSAN 164
Query: 310 SLEDIKAEDW 319
L + W
Sbjct: 165 QLAYQDIQKW 174
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 6e-26
Identities = 33/208 (15%), Positives = 62/208 (29%), Gaps = 25/208 (12%)
Query: 91 AARELKEGIAEFYDESSSLWEDIWG--DHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRF 148
+L + +Y ++ W + + G V D IE + F
Sbjct: 38 LTGDLYDPEKGWYGKALEYWRTVPATVSGVLGGM----DHVHDVD--------IEGSRNF 85
Query: 149 AGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD 208
++ P +D G GIG ++ L K A + + A A +
Sbjct: 86 --IASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPV-- 141
Query: 209 KVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCH 266
F + P +DL+ + ++ D KF + P G I C
Sbjct: 142 -GKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCS 200
Query: 267 RD----LAPSEESLQPWEQELLKKICDA 290
+ + SL + + ++
Sbjct: 201 TGDRFLVDKEDSSLTRSDIHYKRLFNES 228
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 6e-26
Identities = 33/188 (17%), Positives = 63/188 (33%), Gaps = 22/188 (11%)
Query: 132 SDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSP 191
S R +R++ + + + + D+G G GG S LA + G + S
Sbjct: 13 SQTRVPDIRIVNAIINLLNLPKGSV-----IADIGAGTGGYSVALANQ-GLFVYAVEPSI 66
Query: 192 VQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELAR 251
V A V + G A PD D V S+ + H K E+ R
Sbjct: 67 VM------RQQAVVHPQ-VEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQR 119
Query: 252 VTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSL 311
+ +++ + R + W + + + + + + LLQ +
Sbjct: 120 IIRDGTIVLLT-FDIRLAQ------RIWLYDYFPFLWE--DALRFLPLDEQINLLQENTK 170
Query: 312 EDIKAEDW 319
++A +
Sbjct: 171 RRVEAIPF 178
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-25
Identities = 35/194 (18%), Positives = 62/194 (31%), Gaps = 6/194 (3%)
Query: 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQ 193
RA + + + P +++G G G + L + G + +
Sbjct: 15 LRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR-GYRYIALDADA-- 71
Query: 194 AQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVT 253
A G+ KV DA P PD V + +PD K ++E RV
Sbjct: 72 AMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVL 131
Query: 254 APAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLED 313
P G ++ W + +P + W ++ + + L+ L L+
Sbjct: 132 KPGGALLEG-WDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKP 190
Query: 314 IKAE--DWSQNVAP 325
E W + P
Sbjct: 191 RTREVARWREERTP 204
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 2e-23
Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 17/169 (10%)
Query: 108 SLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGC 167
+ W+++ ++ P S + + + A + + R ++D GC
Sbjct: 3 TTWKELTDNN-------PAHSENYAQRWRNLAAAGNDIYGEARLIDAMAPRGAKILDAGC 55
Query: 168 GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQF 227
G G YL+K+ G G L P + A+ + + VGD + F
Sbjct: 56 GQGRIGGYLSKQ-GHDVLGTDLDP------ILIDYAKQDFPEARWVVGDLSVDQISETDF 108
Query: 228 DLVWSMESGEHM---PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSE 273
DL+ S + + ++ + R G +I R +
Sbjct: 109 DLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGD 157
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 97.7 bits (243), Expect = 2e-23
Identities = 30/171 (17%), Positives = 51/171 (29%), Gaps = 13/171 (7%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQ--GITLSPVQAQRANALAAARGLADKVSFQV 214
+P ++VD GCG G L + GI A L F
Sbjct: 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLE 78
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV--TWCHRDLAPS 272
GDA + D ++D+ HM + ++ G II W +
Sbjct: 79 GDATEIELND-KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYL 137
Query: 273 EESLQPWEQELLKKICDAYYLPAWCSTADY------VKLLQSLSLEDIKAE 317
+ + E L + + + D L L +++I+
Sbjct: 138 LDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVKNIECR 188
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 97.6 bits (242), Expect = 3e-23
Identities = 27/179 (15%), Positives = 56/179 (31%), Gaps = 13/179 (7%)
Query: 87 MSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETL 146
+ DA I +FY E + P ++ + +++
Sbjct: 57 LDDAEMNHALSLIRKFYVNLGMKLEMEKAQEVIES-DSPWETLRSFYFYPRYLELLKNEA 115
Query: 147 RFAGVSEDPTKRPKNVVDVGCGIGG-SSRYLAKKFGAKCQGITLSPVQAQRANALAAARG 205
+R + V +G G + L+ +G + + + P A+ + + G
Sbjct: 116 ALGRF-----RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLG 170
Query: 206 LADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264
+ D V+ GD +FD++ K + + R II T+
Sbjct: 171 V-DGVNVITGDET--VIDGLEFDVLM---VAALAEPKRRVFRNIHRYVDTETRIIYRTY 223
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 95.3 bits (237), Expect = 4e-23
Identities = 41/246 (16%), Positives = 84/246 (34%), Gaps = 28/246 (11%)
Query: 89 DAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRF 148
+ R ++ + + + +++ W D + A + I
Sbjct: 3 EPIMRNPEDALLDSWHQNAQAWIDAVRHGAIESRRQVT--------DQAILLAILG---- 50
Query: 149 AGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD 208
++P+ V+D+GCG G R LA + G + G+ A A A
Sbjct: 51 --------RQPERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAARAAGAGEVH-- 99
Query: 209 KVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268
S+ + +DL+ + + H D + +S + + P G ++I T
Sbjct: 100 LASYAQLAEA-KVPVGKDYDLICANFALLH-QDIIELLSAMRTLLVPGGALVIQTLHPWS 157
Query: 269 LAPSEESLQPWEQELLKKICDAYYLPAWCST-ADYVKLLQS--LSLEDIKAEDWSQNVAP 325
+A + E+ D +P + T A ++ L L L ++ Q+ P
Sbjct: 158 VADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVSLQEPQHPQSAVP 217
Query: 326 FWPAVI 331
++
Sbjct: 218 QSLLMV 223
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 94.8 bits (236), Expect = 9e-23
Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 19/161 (11%)
Query: 118 MHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLA 177
M ++E S ++ + + ED ++D+GCG G S LA
Sbjct: 1 MPESYWEKVSGKNIPSSL------DLYPIIHNYLQED-----DEILDIGCGSGKISLELA 49
Query: 178 KKFGAKCQGITLSPVQAQRANALAAARGL----ADKVSFQVGDALQQPFPDGQFDLVWSM 233
K G GI ++ + A A + GL K F+V +A F D FD
Sbjct: 50 SK-GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ 108
Query: 234 ESGEHMPD---KSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
+PD +S+ + E+ RV P + +V +
Sbjct: 109 AFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLK 149
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 3e-22
Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 15/126 (11%)
Query: 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAA 202
EE L + +VD GCG G +YL + K I ++ AL
Sbjct: 7 EEYLPNIFEGKK-----GVIVDYGCGNGFYCKYLLEF-ATKLYCIDINV------IALKE 54
Query: 203 ARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262
+ +K + + + PD D + S M DK +SE+ R+ G +II+
Sbjct: 55 VK---EKFDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIII 111
Query: 263 TWCHRD 268
W +
Sbjct: 112 DWRKEN 117
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 93.1 bits (231), Expect = 5e-22
Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 4/120 (3%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
P K V+D+GCG G Y A+ K GI LS A + + V ++
Sbjct: 41 PDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEA----KRKTTSPVVCYEQ 96
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE 274
+++V S + ++ ++ +G+ I A +
Sbjct: 97 KAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQ 156
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 91.1 bits (226), Expect = 1e-21
Identities = 44/236 (18%), Positives = 77/236 (32%), Gaps = 38/236 (16%)
Query: 87 MSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETL 146
M+ + L E +Y +S ++ + +M S AA R+
Sbjct: 1 MTTSHG--LIESQLSYYRARASEYDATFVPYMD------------SAAPAALERLRAG-- 44
Query: 147 RFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL 206
+V+++ G G +R+L+ + + S A A GL
Sbjct: 45 ----------NIRGDVLELASGTGYWTRHLSGL-ADRVTALDGSAEMI----AEAGRHGL 89
Query: 207 ADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKS--KFVSELARVTAPAGTIIIVTW 264
D V F+ D PD Q+D V+ H+PD F + AP G + V
Sbjct: 90 -DNVEFRQQDLFDWT-PDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV 147
Query: 265 CHRDLAPSEESLQPWEQELLKKICDAYYLPAWC---STADYVKLLQSLSLEDIKAE 317
+ ++ E + + + D S A+ + L +L E
Sbjct: 148 TDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCSVDE 203
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 1e-21
Identities = 32/185 (17%), Positives = 65/185 (35%), Gaps = 13/185 (7%)
Query: 133 DHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPV 192
D + + E+ L+ + + ++D+GCG G + +A+ GA+ G +
Sbjct: 37 DKHSFVWQYGEDLLQLLNP-----QPGEFILDLGCGTGQLTEKIAQS-GAEVLGTDNAA- 89
Query: 193 QAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARV 252
+ AR + F V DA D D V+S + + ++ + +
Sbjct: 90 -----TMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNAMLHWVKEPEAAIASIHQA 143
Query: 253 TAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLE 312
G + ++ E+L + L A + S +YV +L+ +
Sbjct: 144 LKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFD 203
Query: 313 DIKAE 317
A
Sbjct: 204 VTYAA 208
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 89.5 bits (222), Expect = 4e-21
Identities = 37/210 (17%), Positives = 66/210 (31%), Gaps = 44/210 (20%)
Query: 97 EGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPT 156
+AE Y+ W + A + R ++ L
Sbjct: 4 ASLAEAYE--------AWYGTPLGAY-----------VIAEEERALKGLLP--------- 35
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
+++++VG G G R L + G+ S LA R A + ++
Sbjct: 36 -PGESLLEVGAGTGYWLRRLP---YPQKVGVEPSE------AMLAVGRRRAPEATWVRAW 85
Query: 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESL 276
PFP FD+V + E + D + + E RV P G +++
Sbjct: 86 GEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSP------W 139
Query: 277 QPWEQELLKKICDAYYLPAWCSTADYVKLL 306
+ L +K + + + D LL
Sbjct: 140 AALYRRLGEKGVLPWAQARFLAREDLKALL 169
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 92.5 bits (229), Expect = 5e-21
Identities = 40/260 (15%), Positives = 76/260 (29%), Gaps = 32/260 (12%)
Query: 78 ASSTTSTTTMSDAAARELKEGIAEFYDE----SSSLWEDIWGDHMHHGFYEPDSSVSVSD 133
+ ++ + + + +++ +A++Y + S+ L ++D
Sbjct: 4 SCASGCQKSKNGGSTPSIRDHVADYYGKTLQSSADLKTSACKLAAAVPESHRKILADIAD 63
Query: 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQ--GITLSP 191
+ TL G E T V+D+GCG G +K G + G+ +
Sbjct: 64 EVLEKFYGCGSTLPADGSLEGAT-----VLDLGCGTGRDVYLASKLVGEHGKVIGVDMLD 118
Query: 192 VQAQRANALAA-------ARGLADKVSFQVGD------ALQQPFPDGQFDLVWSMESGEH 238
Q + A V F G A + PD D+V S
Sbjct: 119 NQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNL 178
Query: 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298
+K E+ RV G + + +L L
Sbjct: 179 STNKLALFKEIHRVLRDGGELYFSDVYADRRLSEA----AQQDPIL----YGECLGGALY 230
Query: 299 TADYVKLLQSLSLEDIKAED 318
D+ +L+ D++
Sbjct: 231 LEDFRRLVAEAGFRDVRLVS 250
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 90.2 bits (224), Expect = 6e-21
Identities = 48/204 (23%), Positives = 82/204 (40%), Gaps = 20/204 (9%)
Query: 117 HMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYL 176
H HH Y V+ A+ + + ++ A + K + V+DV G G +
Sbjct: 8 HHHHHMY-------VTSQIHAKGSDLAKLMQIAAL-----KGNEEVLDVATGGGHVANAF 55
Query: 177 AKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236
A K L+ + A A G V + GDA Q PF D +F +V +
Sbjct: 56 APF-VKKVVAFDLTEDILKVARAFIEGNGHQQ-VEYVQGDAEQMPFTDERFHIVTCRIAA 113
Query: 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW 296
H P+ + FVSE RV G +++V P ++ + + K+ D + AW
Sbjct: 114 HHFPNPASFVSEAYRVLKKGGQLLLVDNSA----PENDAFDVFYNYVEKER-DYSHHRAW 168
Query: 297 CSTADYVKLLQSLSLEDIKAEDWS 320
+D++K+L+ E + +
Sbjct: 169 -KKSDWLKMLEEAGFELEELHCFH 191
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 1e-20
Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
K K V+D+GC G + + G + GI P A A+ D V +
Sbjct: 31 KEWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFP------EAAEQAKEKLDHVVLGDIE 83
Query: 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263
+ P+ + QFD V + EH+ D + ++ G I+
Sbjct: 84 TMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASI 130
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 1e-20
Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 5/119 (4%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217
+P +D+GCG G +S YLA G + + + + L D + +V D
Sbjct: 32 KPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENL-DNLHTRVVDL 89
Query: 218 LQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEE 274
F D Q+D + S + K ++ + R T P G +IV P
Sbjct: 90 NNLTF-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTV 147
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 87.9 bits (218), Expect = 2e-20
Identities = 38/229 (16%), Positives = 66/229 (28%), Gaps = 45/229 (19%)
Query: 87 MSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETL 146
M + ++ + + + W HR A + ++
Sbjct: 1 MGSDKIHHHHHHMWHIFERFVNEY-ERWFLV----------------HRFAYLSELQAVK 43
Query: 147 RFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL 206
V++G G G + L K G + S AR
Sbjct: 44 CL--------LPEGRGVEIGVGTGRFAVPLKIKIG-----VEPSE------RMAEIAR-- 82
Query: 207 ADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266
V G A P D FD + + + D + + E R+ G +I+
Sbjct: 83 KRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGI--- 139
Query: 267 RDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315
ES E E K+ Y + ST + + L++ E+ K
Sbjct: 140 ----VDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK 184
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 3e-20
Identities = 34/215 (15%), Positives = 70/215 (32%), Gaps = 30/215 (13%)
Query: 96 KEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDP 155
+DE + + DS V D + +V E + + +
Sbjct: 2 GTEFNGLFDEWAHTY---------------DSFVQGEDIQYKEVFAHYEDI----LEDVV 42
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG-LADKVSFQV 214
K NV++ G G G + L G GI S A+ L + S
Sbjct: 43 NKSFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSR------EMRMIAKEKLPKEFSITE 95
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPS 272
GD L D + S + H+ D K+ +++ +++ G I+ D
Sbjct: 96 GDFLSFEV-PTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAY 154
Query: 273 EESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQ 307
+++++ +Q ++ + + + +
Sbjct: 155 DKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFE 189
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 86.4 bits (214), Expect = 1e-19
Identities = 40/171 (23%), Positives = 61/171 (35%), Gaps = 31/171 (18%)
Query: 92 ARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGV 151
+K EFYD + + D + Y HR + E
Sbjct: 10 HHHMKLRSWEFYDRIARAY-DSMYETPKWKLY----------HRLIGSFLEEYL------ 52
Query: 152 SEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVS 211
K P V+D+G G G S +L ++ G + + S L AR +
Sbjct: 53 -----KNPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSK------EMLEVAREKG-VKN 99
Query: 212 FQVGDALQQPFPDGQFDLVWSMESG-EHMPDKSKFVSELARVTAPAGTIII 261
A PFP G F+ V ++ ++ +K K SE+ RV P G +I
Sbjct: 100 VVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIA 150
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 2e-19
Identities = 26/185 (14%), Positives = 55/185 (29%), Gaps = 32/185 (17%)
Query: 97 EGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPT 156
+ +++ Y + E + G + + R T
Sbjct: 3 DDVSKAYSSPTFDAEALLGTVISAEDPD----------RVLIEPW-------------AT 39
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
++DVG G G + +LA G + +G+ + + AR V+F G
Sbjct: 40 GVDGVILDVGSGTGRWTGHLASL-GHQIEGLEPAT------RLVELARQTHPSVTFHHGT 92
Query: 217 ALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE 274
++ + + S HM + + L G +++ + L P
Sbjct: 93 ITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYH 152
Query: 275 SLQPW 279
+
Sbjct: 153 PVATA 157
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 4e-19
Identities = 30/161 (18%), Positives = 51/161 (31%), Gaps = 10/161 (6%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213
P +R N D+GCG G S+ L ++ GI + L A +F
Sbjct: 30 PLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDD------DMLEKAADRLPNTNFG 83
Query: 214 VGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSE 273
D P + DL+++ + +PD +S+L G + + +
Sbjct: 84 KADL-ATWKPAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHI 142
Query: 274 ESLQPWEQELLKKICDAYYLPAWC--STADYVKLLQSLSLE 312
+ + K L +DY L S
Sbjct: 143 AMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKSSR 183
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 85.1 bits (210), Expect = 5e-19
Identities = 32/172 (18%), Positives = 55/172 (31%), Gaps = 21/172 (12%)
Query: 112 DIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGG 171
D D M G ++ ++ + A I V K + ++++GCG G
Sbjct: 7 DYITDLMALGPTA--NARTIQRRQTAHRLAI---AEAWQV-----KPGEKILEIGCGQGD 56
Query: 172 SSRYLAKKFGAKCQ--GITLSPVQAQRANALAAAR------GLADKVSFQVGDAL---QQ 220
S LA + G+ GI ++ L A L D+++ L
Sbjct: 57 LSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLG 116
Query: 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPS 272
P D FD V S + + + A + + W + A
Sbjct: 117 PIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALD 168
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 3e-18
Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 14/122 (11%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR---GLADKVS 211
+ N +++GC G + LA + I + P A+ A +S
Sbjct: 48 SSGAVSNGLEIGCAAGAFTEKLAPH-CKRLTVIDVMP------RAIGRACQRTKRWSHIS 100
Query: 212 FQVGDALQQPFPDGQFDLVWSMESGEHMPDKS---KFVSELARVTAPAGTIIIVTWCHRD 268
+ D LQ FDL+ E ++ D + + + ++ AP G ++ +
Sbjct: 101 WAATDILQFS-TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDAT 159
Query: 269 LA 270
Sbjct: 160 CR 161
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 81.2 bits (200), Expect = 1e-17
Identities = 41/214 (19%), Positives = 73/214 (34%), Gaps = 25/214 (11%)
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQ--GITLSPVQAQRANALAAARGLADK-VSF 212
K +VDVGCG G ++ +A++ Q G LS + A + K VSF
Sbjct: 34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSF 93
Query: 213 QVGDA------LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266
++ + + D++ ++E H D KF GTI I +
Sbjct: 94 KISSSDDFKFLGADSVDKQKIDMITAVECA-HWFDFEKFQRSAYANLRKDGTIAIWGYAD 152
Query: 267 -------------RDLAPSEESLQP-WEQELLKKICDAYYLPAWCSTADYVKLLQSLSLE 312
++ ++ L P WEQ ++ + + + E
Sbjct: 153 PIFPDYPEFDDLMIEVPYGKQGLGPYWEQPGRSRLRNMLKDSHLDPELFHDIQVSYFCAE 212
Query: 313 DIKAEDWSQNVAPFWPAVIHSALTWKGFTSLLRT 346
D++ + P +I +T F +RT
Sbjct: 213 DVRDKVKLHQHTK-KPLLIRKQVTLVEFADYVRT 245
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 2e-17
Identities = 44/178 (24%), Positives = 69/178 (38%), Gaps = 17/178 (9%)
Query: 118 MHHGFYEPDSSVSVSDHRAAQVRM--IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRY 175
+ H F D S +++ + E+ L+ G+ E T V+DVG G G Y
Sbjct: 3 LAHKF---DPSKIKKLDDPSRLELFDPEKVLKEFGLKEGMT-----VLDVGTGAGFYLPY 54
Query: 176 LAKKFGA--KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM 233
L+K G K I + A GL + V + + P PD D ++
Sbjct: 55 LSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKN-VEVLKSEENKIPLPDNTVDFIFMA 113
Query: 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD---LAPSEESLQPWE-QELLKKI 287
+ + + KF+ EL RV P + I+ W + P EE WE +L+
Sbjct: 114 FTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDA 171
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 80.0 bits (197), Expect = 3e-17
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 14/115 (12%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
+ V+D+GCG G + A G+ +S A+ AA +V+F V
Sbjct: 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSK------VAIKAAAKRYPQVTFCVAS 138
Query: 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
+ + PF D D + + + ELARV P G +I T R L
Sbjct: 139 SHRLPFSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGPRHLME 186
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 5e-17
Identities = 20/132 (15%), Positives = 47/132 (35%), Gaps = 8/132 (6%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217
++ + G G ++ +LA G + + S V +A LA +G+ ++ +
Sbjct: 29 PQGKILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGVK--ITTVQSNL 85
Query: 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLA-----PS 272
++ + S+ + + ++ + P G I+ + L P
Sbjct: 86 ADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPK 145
Query: 273 EESLQPWEQELL 284
+ L P + L
Sbjct: 146 DLDLLPKLETLQ 157
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 7e-17
Identities = 23/122 (18%), Positives = 36/122 (29%), Gaps = 6/122 (4%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
P V+D+GCG G +S YL+ G + N L +S +
Sbjct: 117 KIISPCKVLDLGCGQGRNSLYLSLL-GYDVTSWDHNENSIAFLNETKEKENL--NISTAL 173
Query: 215 GDALQQPFPDGQFDLVWSMESGEHM--PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPS 272
D +D + S + + + T G +IV D P
Sbjct: 174 YDINAANIQ-ENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPC 232
Query: 273 EE 274
Sbjct: 233 PL 234
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 3e-16
Identities = 30/183 (16%), Positives = 63/183 (34%), Gaps = 15/183 (8%)
Query: 133 DHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSP 191
+ R + ++ + +++D+G G G S +L +K+ A + +S
Sbjct: 19 EQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSE 78
Query: 192 VQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSEL 249
+ A KV + D + F + ++D+V S S H+ DK +
Sbjct: 79 KMLEIAKNRFRG---NLKVKYIEADYSKYDF-EEKYDMVVSALSIHHLEDEDKKELYKRS 134
Query: 250 ARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL 309
+ +G I H + + + L K I Y + + + +
Sbjct: 135 YSILKESGIFINADLVHGET--------AFIENLNKTIWRQYVENSGLTEEEIAAGYERS 186
Query: 310 SLE 312
L+
Sbjct: 187 KLD 189
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 75.0 bits (184), Expect = 8e-16
Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 8/117 (6%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADK---- 209
+ V+D+GCG G + L K + G+ +S + A L
Sbjct: 26 KQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWER 85
Query: 210 VSFQVGDALQQPFPDGQFDLVWSMESGEHM--PDKSKFVSELARVTAPAGTIIIVTW 264
+ G Q +D +E EH+ F L P +I+ T
Sbjct: 86 LQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQP-KIVIVTTP 141
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 75.1 bits (184), Expect = 1e-15
Identities = 25/162 (15%), Positives = 55/162 (33%), Gaps = 23/162 (14%)
Query: 110 WEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGI 169
WE W + +S+ + D + + L + +P ++D CG
Sbjct: 19 WEQYWNKTL------VNSTPVLWDANVERA--VVVDLPRFELLFNPELP---LIDFACGN 67
Query: 170 GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ----QPFPDG 225
G +++L++ + G+ +S + A A +S+++ D L
Sbjct: 68 GTQTKFLSQF-FPRVIGLDVSKSALEIAAKENTAAN----ISYRLLDGLVPEQAAQIHSE 122
Query: 226 QFDLVWSMESGEH---MPDKSKFVSELARVTAPAGTIIIVTW 264
D M +G H + + L + G + ++
Sbjct: 123 IGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIEL 164
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 73.9 bits (181), Expect = 1e-15
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 18/125 (14%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
+ ++ +GCG S L + S V A A ++ ++ D
Sbjct: 41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVP---QLRWETMD 97
Query: 217 ALQQPFPDGQFDLVWS---------------MESGEHMPDKSKFVSELARVTAPAGTIII 261
+ FP FD+V S E + + +SE++RV P G I
Sbjct: 98 VRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFIS 157
Query: 262 VTWCH 266
+T
Sbjct: 158 MTSAA 162
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 73.9 bits (181), Expect = 2e-15
Identities = 33/194 (17%), Positives = 54/194 (27%), Gaps = 28/194 (14%)
Query: 107 SSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVG 166
S D + + +S D + L P R V++ G
Sbjct: 7 SRESYDRLARELGGYRHPWARVLSGPDPELTFDLWLSRLLT-------PQTR---VLEAG 56
Query: 167 CGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDG 225
CG G + + A+ SP L AR A + + P G
Sbjct: 57 CGHGPDAARFGPQ-AARWAAYDFSP------ELLKLARANAPHADVYEWNGKGELPAGLG 109
Query: 226 Q-FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQP--WEQE 282
F L+ S + + L + AP + V ++ E L W+
Sbjct: 110 APFGLIVSRR------GPTSVILRLPELAAPDAHFLYVGP-RLNVPEVPERLAAVGWDIV 162
Query: 283 LLKKICDAYYLPAW 296
+ + P W
Sbjct: 163 AEDHVSVLAHAPTW 176
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 74.0 bits (181), Expect = 4e-15
Identities = 31/224 (13%), Positives = 69/224 (30%), Gaps = 33/224 (14%)
Query: 104 DESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVV 163
SL+ D F ++ S +++ L TK ++
Sbjct: 3 SSMRSLFSDH--GKYVESF---RRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKIL 57
Query: 164 DVGCGIGGSSRYLAKKFGAKCQGITL-------SPVQAQRANALAAARGLADKVSF---- 212
+G G G + K A+ G+ + S Q + L A + V F
Sbjct: 58 SIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHK 117
Query: 213 ----QVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268
+ + + ++D + ++ ++ D + + ++I+
Sbjct: 118 ETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGS- 176
Query: 269 LAPSEESLQPWEQELLKKICDAYYLPAWC---STADYVKLLQSL 309
W++ L KK + C ++ D ++L +L
Sbjct: 177 --------SGWDK-LWKKYGSRFPQDDLCQYITSDDLTQMLDNL 211
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A* Length = 302 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 5e-15
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 7/87 (8%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD--ALQ 219
++D+GCG G + R+ ++ G+TLS Q A+ + ++
Sbjct: 76 LLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF- 134
Query: 220 QPFPDGQFDLVWSMESGEHMPDKSKFV 246
D D + S+ + EH D +
Sbjct: 135 ----DEPVDRIVSLGAFEHFADGAGDA 157
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 72.8 bits (178), Expect = 6e-15
Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 4/109 (3%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217
+ GCG G +A G+ +S +AN + A+ SF D
Sbjct: 66 PLGRALVPGCGGGHDVVAMASP-ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDV 124
Query: 218 LQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTW 264
P FDL++ + + + + + P G +I + +
Sbjct: 125 F-TWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMY 172
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Length = 287 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 4e-14
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD--ALQ 219
++DVGCG G + +K+ G+TLS QA L A +
Sbjct: 68 LLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF- 126
Query: 220 QPFPDGQFDLVWSMESGEH 238
D D + S+ + EH
Sbjct: 127 ----DEPVDRIVSIGAFEH 141
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 4e-14
Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 14/111 (12%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
K + V+D+GCG G K+ G + G+ ++ + K + D
Sbjct: 40 KGCRRVLDIGCGRGEFLELC-KEEGIESIGVDINEDMIKFCEG---------KFNVVKSD 89
Query: 217 ALQ--QPFPDGQFDLVWSMESGEHM--PDKSKFVSELARVTAPAGTIIIVT 263
A++ + PD D V EH+ + +S + I+I +
Sbjct: 90 AIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIES 140
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 5e-14
Identities = 23/142 (16%), Positives = 41/142 (28%), Gaps = 20/142 (14%)
Query: 122 FYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG 181
FY + A + +F ++++GCG G + + G
Sbjct: 16 FYR-----GNATAYAERQPRSATLTKFL----GELPAGAKILELGCGAGYQAEAMLAA-G 65
Query: 182 AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP- 240
SP A A+ + Q D +D VW+ H+P
Sbjct: 66 FDVDATDGSPELAAEASRRLGRP-------VRTMLFHQLDAID-AYDAVWAHACLLHVPR 117
Query: 241 -DKSKFVSELARVTAPAGTIII 261
+ + + + R P G
Sbjct: 118 DELADVLKLIWRALKPGGLFYA 139
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Length = 318 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 6e-14
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD--ALQ 219
++D+GCG G + R ++F G+TLS Q R + A+ +
Sbjct: 94 LLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF- 152
Query: 220 QPFPDGQFDLVWSMESGEH 238
D + S+E+ EH
Sbjct: 153 ----AEPVDRIVSIEAFEH 167
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 2e-13
Identities = 44/266 (16%), Positives = 82/266 (30%), Gaps = 35/266 (13%)
Query: 87 MSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETL 146
M+ ++A + A++ E + L++ + + + +
Sbjct: 1 MAHSSATAGPQ--ADYSGEIAELYDLVHQG--------------KGKDYHREAADLAALV 44
Query: 147 RFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL 206
R + +++DV CG G R+LA +G+ LS + LA AR
Sbjct: 45 RRHSP------KAASLLDVACGTGMHLRHLADS-FGTVEGLELSA------DMLAIARRR 91
Query: 207 ADKVSFQVGDALQQPFPDGQFDLVWSM-ESGEHMPDKS---KFVSELARVTAPAGTIII- 261
GD +F V M S H+ ++ + A P G +++
Sbjct: 92 NPDAVLHHGDMRDFSLG-RRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE 150
Query: 262 VTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321
W + P + E ++ +T V L + I + S
Sbjct: 151 PWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEESH 210
Query: 322 NVAPFWPAVIHSALTWKGFTSLLRTG 347
+ F A T G + G
Sbjct: 211 RITLFTREQYERAFTAAGLSVEFMPG 236
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 2e-13
Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 8/113 (7%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLAD----KVSF 212
K V+D+GCG G L K + G+ +S +RA L + ++S
Sbjct: 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISL 88
Query: 213 QVGDALQQPFPDGQFDLVWSMESGEHM--PDKSKFVSELARVTAPAGTIIIVT 263
+ + +D +E EH+ F L T P T+I+ T
Sbjct: 89 FQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRP-QTVIVST 140
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 5e-13
Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 10/111 (9%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG-LADKVSFQ 213
P RP N++++G G + L + + S A++ A+G L D +++
Sbjct: 39 PFFRPGNLLELGSFKGDFTSRLQEH-FNDITCVEASE------EAISHAQGRLKDGITYI 91
Query: 214 VGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELA-RVTAPAGTIIIVT 263
+ ++D + EH+ D + + A G + +V
Sbjct: 92 HSR-FEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVC 141
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 67.8 bits (165), Expect = 5e-13
Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 5/121 (4%)
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215
TKR +V+D+GCG GG + + G+ ++ V A A KV F+
Sbjct: 62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQ 121
Query: 216 DALQQPF-PDGQFDLVWSMESGEHMPDKS----KFVSELARVTAPAGTIIIVTWCHRDLA 270
D+ + +FD++ S S + S +AR P G I+ +
Sbjct: 122 DSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVIL 181
Query: 271 P 271
Sbjct: 182 E 182
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 7e-12
Identities = 39/172 (22%), Positives = 64/172 (37%), Gaps = 33/172 (19%)
Query: 93 RELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVS 152
EL +AE+YD ++ A++ +EE +
Sbjct: 2 YELYTLLAEYYDT---IYRRRIERV------------------KAEIDFVEEIFKEDAK- 39
Query: 153 EDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSF 212
+ + V+D+ CG G + LA++ G + G+ L + A A R L K+ F
Sbjct: 40 ----REVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNL--KIEF 92
Query: 213 QVGDALQQPFPDGQFDLVWSM-ESGEHM--PDKSKFVSELARVTAPAGTIII 261
GD L+ F +FD V + + D K S++A P G I
Sbjct: 93 LQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT 143
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 1e-11
Identities = 38/217 (17%), Positives = 69/217 (31%), Gaps = 19/217 (8%)
Query: 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQ 195
AA+ I + +R +++DV CG G + K+ G+ LS
Sbjct: 24 AAEASDIADLVRSRT------PEASSLLDVACGTGTHLEHFTKE-FGDTAGLELSE---- 72
Query: 196 RANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG----EHMPDKSKFVSELAR 251
+ L AR + GD +F V SM S + + V+ A
Sbjct: 73 --DMLTHARKRLPDATLHQGDMRDFRLG-RKFSAVVSMFSSVGYLKTTEELGAAVASFAE 129
Query: 252 VTAPAGTIIIVTWCHRD-LAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLS 310
P G +++ W + A S ++ ++ + +T V +
Sbjct: 130 HLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADP 189
Query: 311 LEDIKAEDWSQNVAPFWPAVIHSALTWKGFTSLLRTG 347
+ ++ + F A +A T G G
Sbjct: 190 GKGVRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEG 226
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 2e-11
Identities = 38/200 (19%), Positives = 63/200 (31%), Gaps = 18/200 (9%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
+ K + D+GCG G ++ LA + G+ LS + A A V F V D
Sbjct: 32 EPGKRIADIGCGTGTATLLLAD--HYEVTGVDLSEEMLEIAQEKAMETNR--HVDFWVQD 87
Query: 217 ALQQPFPDGQFDLVWSMESG----EHMPDKSKFVSELARVTAPAGTIII---VTWCHRDL 269
+ P+ D + + + D + AR+ G ++ + L
Sbjct: 88 MRELELPE-PVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETL 146
Query: 270 APSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLED--IKAEDWSQNVAPFW 327
+ EQ D P +L + ED D + + +
Sbjct: 147 FNGKTYATHAEQSSYIWFADPGEEPLSV----VHELTFFIEGEDGRYDRVDETHHQRTYP 202
Query: 328 PAVIHSALTWKGFTSLLRTG 347
P + L GF TG
Sbjct: 203 PEQYITWLREAGFRVCAVTG 222
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 5e-11
Identities = 24/115 (20%), Positives = 38/115 (33%), Gaps = 10/115 (8%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANA-----LAAARGLADKV 210
+VD GCG G L G+ +SP RA L
Sbjct: 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSA 780
Query: 211 SFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVT 263
+ G L+ D+ +E EHM + +F ++ + P +I+ T
Sbjct: 781 TLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHP-KLLIVST 834
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 2e-10
Identities = 35/280 (12%), Positives = 76/280 (27%), Gaps = 45/280 (16%)
Query: 78 ASSTTSTTTMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAA 137
+ + ++ R + + +FYDE ++ D + D + +
Sbjct: 29 VRTPHADVLLASVGERGV---LCDFYDEGAA---DTYRDLIQDADGTSE----------- 71
Query: 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSP--VQAQ 195
E G V+++ G+G + G + + LS + A
Sbjct: 72 ----AREFATRTG------PVSGPVLELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAF 120
Query: 196 RANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-ESGEHMPDKS--KFVSELARV 252
R A + D+ + GD +F V S + + + +
Sbjct: 121 RKRLAEAPADVRDRCTLVQGDMSAFALD-KRFGTVVISSGSINELDEADRRGLYASVREH 179
Query: 253 TAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLE 312
P G ++ +P E++ + +Q +++
Sbjct: 180 LEPGGKFLLSLA-----MSEAAESEPLERKQELPGRSGRRY-VLHVRHLPAEEIQEITIH 233
Query: 313 DIKAEDWSQNVAP-----FWPAVIHSALTWKGFTSLLRTG 347
V P + L GF + +T
Sbjct: 234 PADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTP 273
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 8e-10
Identities = 27/153 (17%), Positives = 54/153 (35%), Gaps = 17/153 (11%)
Query: 119 HHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAK 178
G P+ V V +A M A + + P V+D+ G +A+
Sbjct: 126 SEGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQ 185
Query: 179 KF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLV------- 230
A+ G+ + V + A A +G+A + G A + + + +DLV
Sbjct: 186 HNPNAEIFGVDWASV-LEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNFLH 243
Query: 231 -WSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262
+ + + + ++ A G +I+
Sbjct: 244 HFDVA------TCEQLLRKIKTALAVEGKVIVF 270
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 1e-09
Identities = 27/169 (15%), Positives = 44/169 (26%), Gaps = 36/169 (21%)
Query: 97 EGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPT 156
A YD+ D I E +
Sbjct: 4 NKFAHIYDK----------------LIRADV------DYKKWSDFIIEKCVENNL----- 36
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
+ +D+ CG G + L K + LS A ++GL K D
Sbjct: 37 -VFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQD 92
Query: 217 ALQQPFPDGQFDLVWSM-ESGEHMPDKS---KFVSELARVTAPAGTIII 261
+FDL+ +S ++ D K+ ++ G I
Sbjct: 93 ISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 2e-09
Identities = 35/178 (19%), Positives = 44/178 (24%), Gaps = 46/178 (25%)
Query: 85 TTMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEE 144
+ S AA R +E F H GF V V I
Sbjct: 19 SGPSSAAQRLFQEDPEAF-------------LLYHRGFQS-----QVKKWPLQPVDRIAR 60
Query: 145 TLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204
LR V D GCG LA L+ +
Sbjct: 61 DLR-------QRPASLVVADFGCGDC----RLASSIRNPVHCFDLASLD----------- 98
Query: 205 GLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262
V D Q P D D+ S + F+ E RV P G + +
Sbjct: 99 -----PRVTVCDMAQVPLEDESVDVAVFCLS-LMGTNIRDFLEEANRVLKPGGLLKVA 150
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 4e-09
Identities = 22/138 (15%), Positives = 43/138 (31%), Gaps = 13/138 (9%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQ--GITLSPVQAQRANALAAARGLADKVSFQVGDA-- 217
VVD CG G + +LA G + G + L D+V+
Sbjct: 26 VVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQN 85
Query: 218 ----LQQPFPDGQFDLVW----SMESGEHMPDKSKFVSELARVTAPAGTIIIVT-WCHRD 268
+ P F+L + + +S+ + G I +V +
Sbjct: 86 MDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDT 145
Query: 269 LAPSEESLQPWEQELLKK 286
+E + + + + +K
Sbjct: 146 GFEEKEKVLEFLKGVDQK 163
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 5e-09
Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 25/128 (19%)
Query: 107 SSLWEDIWGDHMHHGFYEPDSSV---SVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVV 163
S + I D G++ SV +++H A R + + VV
Sbjct: 44 SRFDDGIKLDR--EGWF----SVTPEKIAEHIA---------GRVSQSFKCDV-----VV 83
Query: 164 DVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP 223
D CG+GG++ A + I + PV+ A A G+ADK+ F GD L
Sbjct: 84 DAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-S 141
Query: 224 DGQFDLVW 231
+ D+V+
Sbjct: 142 FLKADVVF 149
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 6e-09
Identities = 35/191 (18%), Positives = 58/191 (30%), Gaps = 41/191 (21%)
Query: 89 DAAARELKEGIAEFYD-ESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLR 147
AA + + ++ D E++ +W+ GD A + LR
Sbjct: 12 GVAAEGIPD---QYADGEAARVWQLYIGDTRSR--------------TAEYKAWLLGLLR 54
Query: 148 FAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPV---QAQRANALAAAR 204
V+DV CG G S L ++ G + S A +
Sbjct: 55 --------QHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKE 105
Query: 205 GLADKVSFQVGDALQQP---FPDGQFDLVWSM-ESGEHMPDKS-------KFVSELARVT 253
DK + + L FD V + S H+PD + +A +
Sbjct: 106 PAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMV 165
Query: 254 APAGTIIIVTW 264
P G ++I
Sbjct: 166 RPGGLLVIDHR 176
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 5e-08
Identities = 18/133 (13%), Positives = 42/133 (31%), Gaps = 16/133 (12%)
Query: 147 RFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL 206
+ + + V+ + G G A R N
Sbjct: 37 MYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNS 96
Query: 207 ADKVSFQVGD-------------ALQQPFPDGQFDLV---WSMESGEHMPDKSKFVSELA 250
K + D ++++ F G+F+++ +++ H + ++ L+
Sbjct: 97 GIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLS 156
Query: 251 RVTAPAGTIIIVT 263
+TA G ++I T
Sbjct: 157 ELTASGGKVLITT 169
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 23/164 (14%), Positives = 48/164 (29%), Gaps = 26/164 (15%)
Query: 110 WEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGI 169
W I+ S + + PK ++D+G
Sbjct: 138 WPTIYEGLSQL---PEQVQKSWFGFDHFYSDQSFGKA----LEIVFSHHPKRLLDIGGNT 190
Query: 170 GGSSRYLAKKFGAKCQGITL-SPVQAQRANALAAARGLADKVSFQVGDAL--QQPFPDGQ 226
G + + + + + P Q + A ++++ + L PFP G
Sbjct: 191 GKWATQCVQYN-KEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTG- 248
Query: 227 FDLV--------WSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262
FD V +S E + ++ +A+ + I+
Sbjct: 249 FDAVWMSQFLDCFSEE------EVISILTRVAQSIGKDSKVYIM 286
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 1e-07
Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 17/115 (14%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
R + V+D+ G G + ++ Q L A A L +V F +
Sbjct: 179 RARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTT-RDAARKTIHAHDLGGRVEFFEKN 237
Query: 217 ALQQPFPDG-QFDLV--------WSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262
L +G D+V + + + + A + P G ++I+
Sbjct: 238 LLDARNFEGGAADVVMLNDCLHYFDAR------EAREVIGHAAGLVKPGGALLIL 286
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 2e-07
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
R ++D+ G G L+ + AK G+ + A A A L D++
Sbjct: 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIE 105
Query: 215 GD--ALQQPFPDGQFDLV 230
D + P + D+V
Sbjct: 106 YDLKKITDLIPKERADIV 123
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 3e-07
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVG 215
+ ++DVG L ++ + Q A A GL +K+ ++
Sbjct: 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLA 73
Query: 216 DALQQPFPDGQFDLV 230
+ L Q ++
Sbjct: 74 NGLAAFEETDQVSVI 88
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 3e-07
Identities = 25/160 (15%), Positives = 61/160 (38%), Gaps = 37/160 (23%)
Query: 130 SVSDHRAAQVRMIEETLRF---AGV-SED-------------PTKRPKNVVDVGCGIGGS 172
+ SD + + + + L+F +GV S + +++D+GCG G
Sbjct: 7 TKSDVKIVEDILRGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDKDDDILDLGCGYGVI 66
Query: 173 SRYLAKKFGAKCQGITLSPVQAQRANALAAAR------GLAD-KVSFQVGDALQQPFPDG 225
LA + + T++ + + A+ A+ L + + D + D
Sbjct: 67 GIALADEVKS----TTMADINRR---AIKLAKENIKLNNLDNYDIRVVHSDLYENV-KDR 118
Query: 226 QFDLVWS---MESGEHMPDKSKFVSELARVTAPAGTIIIV 262
+++ + + + +G+ + + + E + G I +V
Sbjct: 119 KYNKIITNPPIRAGKEVLH--RIIEEGKELLKDNGEIWVV 156
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 3e-07
Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 18/114 (15%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
K ++DVG GIG S + K F + L N AA +G+AD++ D
Sbjct: 190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGA-IDLVNENAAEKGVADRMRGIAVD 248
Query: 217 ALQQPFPDGQFDLV--------WSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262
++ +P+ D V + + + + G ++I+
Sbjct: 249 IYKESYPEA--DAVLFCRILYSANEQ------LSTIMCKKAFDAMRSGGRLLIL 294
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 5e-07
Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 9/119 (7%)
Query: 151 VSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGIT--LSPVQAQRA--NALAAARGL 206
V E V++ G G G + L + G Q I+ A+ A N
Sbjct: 92 VHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP 151
Query: 207 ADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265
D V D PDG D M + + ++R+ G +++
Sbjct: 152 PDNWRLVVSDLADSELPDGSVDRA-----VLDMLAPWEVLDAVSRLLVAGGVLMVYVAT 205
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 7e-07
Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 8/118 (6%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQ--GITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219
+++VG G G S Y+ K + ++A + V D +
Sbjct: 114 ILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSD-IA 172
Query: 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQ 277
D +D V +PD V ++A + P + SL
Sbjct: 173 DFISDQMYDAV-----IADIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLS 225
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 1e-06
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 11/89 (12%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPV---QAQRANALAAARGLADKV 210
R + D+G G G + +A + A+ S A+R+ L + ++
Sbjct: 33 ADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARI 92
Query: 211 SFQVGDA-------LQQPFPDGQFDLVWS 232
D ++ PD F V
Sbjct: 93 EVLEADVTLRAKARVEAGLPDEHFHHVIM 121
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313 | Back alignment and structure |
|---|
Score = 48.4 bits (114), Expect = 2e-06
Identities = 24/139 (17%), Positives = 37/139 (26%), Gaps = 16/139 (11%)
Query: 147 RFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA--- 203
F KR V+D+GCG GG K K ++ V ++
Sbjct: 23 EFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKN 82
Query: 204 ---RGLADKVSFQVGDALQQPFPD------GQFDLVWSMES----GEHMPDKSKFVSELA 250
F D+ ++ D FD+ E +
Sbjct: 83 RRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNAC 142
Query: 251 RVTAPAGTIIIVTWCHRDL 269
+P G I T +L
Sbjct: 143 ERLSPGGYFIGTTPNSFEL 161
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-06
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQ 213
K+P+ VV G G+G +S + A+ + + + + A + GL D+V Q
Sbjct: 54 IKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQ 113
Query: 214 VGDALQQPFPDGQFDLV 230
VGD L D++
Sbjct: 114 VGDPLGIAAGQRDIDIL 130
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 2e-06
Identities = 22/134 (16%), Positives = 39/134 (29%), Gaps = 20/134 (14%)
Query: 160 KNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANA-LAAARGLADKVSFQVGDAL 218
VVD+ G+G L K ++ I + A A + V+ GD
Sbjct: 95 TKVVDLTGGLGIDFIALMSK-ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFK 153
Query: 219 Q--QPFPDGQFDLVW------------SMESGEHMPDKSKFVSELAR----VTAPAGTII 260
+ D ++ + PD +EL + A +I
Sbjct: 154 EYLPLIKTFHPDYIYVDPARRSGADKRVYAIADCEPDLIPLATELLPFCSSILAKLSPMI 213
Query: 261 IVTWCHRDLAPSEE 274
+ + L +E
Sbjct: 214 DLWDTLQSLLHVQE 227
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 3e-06
Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 13/119 (10%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSP--VQAQRANALAAARGLADKVS 211
P +VD+GCG G L K AK + SP V + R N D+
Sbjct: 219 PENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCE 278
Query: 212 FQVGDALQQPFPDGQFDLVWS-------MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263
F + +AL +F+ V +++ + R G + IV
Sbjct: 279 FMINNALSGV-EPFRFNAVLCNPPFHQQHALTDNVAW--EMFHHARRCLKINGELYIVA 334
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* Length = 236 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 3e-06
Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 12/148 (8%)
Query: 126 DSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQ 185
D++ + V ET ++ + + V++VG G+ ++ + + +
Sbjct: 28 DAADTHLRILGKPVMERWETPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHW 87
Query: 186 GITLSPVQAQRANALAAARGLADKVSFQVGDA--LQQPFPDGQFDLVW-----SMESGEH 238
I + QR A + KV G + PDG FD + E H
Sbjct: 88 IIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWH 145
Query: 239 MPDKSKFVSELARVTAPAGTIIIVTWCH 266
+ + R+ P G ++T+C+
Sbjct: 146 THQFNFIKNHAFRLLKPGG---VLTYCN 170
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 4e-06
Identities = 20/155 (12%), Positives = 53/155 (34%), Gaps = 14/155 (9%)
Query: 141 MIEETLRFAGVSEDPTKRPKN-VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANA 199
MI+ + + ++ VVD G G + +LA K + + +
Sbjct: 4 MIKRPIHMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGLSK-KVYAFDVQEQALGKTSQ 62
Query: 200 LAAARGLADKVSF------QVGDALQQPFPDGQFDLVWSMESGEHMPDKS----KFVSEL 249
+ G+ + + +++P F+L + + + + K + + ++
Sbjct: 63 RLSDLGI-ENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKI 121
Query: 250 ARVTAPAGTIIIVTWCHRDLAPSE-ESLQPWEQEL 283
G + I+ + D E +++ + L
Sbjct: 122 LDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGL 156
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 4e-06
Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 12/126 (9%)
Query: 160 KNVVDVGCGIGGSSRYLAKKFGA--KCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217
+V+ G G G + +LA G + + A+ A G D+V+ ++ D
Sbjct: 95 DFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKD- 153
Query: 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII----VTWCHRDLAPSE 273
+ + + D V +P + V A+ P G + R
Sbjct: 154 IYEGIEEENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLR 208
Query: 274 ESLQPW 279
E +
Sbjct: 209 EFKDYF 214
|
| >1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics hypothetical protein, structure 2 function project, S2F, TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP: c.66.1.14 Length = 244 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 5e-06
Identities = 23/151 (15%), Positives = 43/151 (28%), Gaps = 4/151 (2%)
Query: 133 DHRAAQVRMIEETLRFAG-VSEDPTKRPKNVVDVGCGIGGSSRYLAKKF---GAKCQGIT 188
D V + G ++E NV D+GC G ++ + K GI
Sbjct: 32 DMIQRSVPGYSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGID 91
Query: 189 LSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSE 248
S +R AA V D + ++ D+ +++
Sbjct: 92 NSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTK 151
Query: 249 LARVTAPAGTIIIVTWCHRDLAPSEESLQPW 279
+ P G +++ + L
Sbjct: 152 IYEGLNPNGVLVLSEKFRFEDTKINHLLIDL 182
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 6e-06
Identities = 26/173 (15%), Positives = 45/173 (26%), Gaps = 14/173 (8%)
Query: 162 VVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLA---DKVSFQVGDA 217
+D+G G G + LA GI + + V F + A
Sbjct: 28 HIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAA 87
Query: 218 LQQPFP-DGQFDLV-----WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
PF D + W + +S +A + VT
Sbjct: 88 ESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEE 147
Query: 272 SEESLQPWEQELLKKICDAYYLPAWCS---TADYVKLLQSLSLEDIKAEDWSQ 321
+E + Y + D VK L + ++ W++
Sbjct: 148 AEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDDVKELDNEYVK-QFNSLWAK 199
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 1e-05
Identities = 11/75 (14%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVG 215
+ + + D+G + K A + Q A + GL +++ + G
Sbjct: 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKG 79
Query: 216 DALQQPFPDGQFDLV 230
+ L D +
Sbjct: 80 NGLAVIEKKDAIDTI 94
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 2e-05
Identities = 13/106 (12%), Positives = 31/106 (29%), Gaps = 3/106 (2%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVG 215
+ ++DVG +L + + Q A + GL K+ ++
Sbjct: 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLA 79
Query: 216 DALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261
+ L D + G + ++ T+++
Sbjct: 80 NGLSAFEEADNIDTI--TICGMGGRLIADILNNDIDKLQHVKTLVL 123
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Length = 221 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQV 214
P V+++G G S+ +A+ + +T+ +P A + GL DKV+
Sbjct: 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILN 116
Query: 215 GDA------LQQPFPDGQFDLV 230
G + L++ + D+V
Sbjct: 117 GASQDLIPQLKKKYDVDTLDMV 138
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 44.2 bits (103), Expect = 3e-05
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
R ++V+D+GC +G + +A K+G G+ + A + +
Sbjct: 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEE-LRLPPQT 104
Query: 217 ALQQPFPDGQFD 228
P +G+
Sbjct: 105 LEGDPGAEGEEG 116
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 18/81 (22%)
Query: 157 KRPKNVVDVGCG-----IGGSSRYLAKKFGAKCQGITLSP--VQAQRANALAAARGLADK 209
+ V+D+G G I A+K G K G+ + P + AN A G+ +
Sbjct: 119 RPGDKVLDLGTGSGVLAIA------AEKLGGKALGVDIDPMVLPQAEAN--AKRNGVRPR 170
Query: 210 VSFQVGDALQQPFPDGQFDLV 230
G P G FDL+
Sbjct: 171 F--LEGSLEAA-LPFGPFDLL 188
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 3e-05
Identities = 34/219 (15%), Positives = 56/219 (25%), Gaps = 48/219 (21%)
Query: 77 RASSTTSTTTMSDAAARELKEGIAEFY------------------DESSSLWEDIWGDHM 118
A S R + E + Y E + L + +
Sbjct: 115 EARREGEHPFTSPEVERRVGEALHRAYGVPVDLKRPAVRVRVDVRGEEAFLGVQLTERPL 174
Query: 119 HHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSS--RYL 176
F + S++ A + LR A V+D G G +
Sbjct: 175 SRRFPKAALRGSLTPVLAQAL------LRLADARPGMR-----VLDPFTGSGTIALEAAS 223
Query: 177 AKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLV-----W 231
+ L + A A A GL + F DA P + D +
Sbjct: 224 TLGPTSPVYAGDLDEKRLGLAREAALASGL-SWIRFLRADARHLPRFFPEVDRILANPPH 282
Query: 232 SMESGEHMPDK-------SKFVSELARVTAPAGTIIIVT 263
G + K F+ + P G + ++T
Sbjct: 283 ----GLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 4e-05
Identities = 28/214 (13%), Positives = 66/214 (30%), Gaps = 38/214 (17%)
Query: 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAK-CQGITLSPV------- 192
++ + + +++D VD+G G+G +A K G+ + +
Sbjct: 161 LVAQMIDEIKMTDDDL-----FVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAET 215
Query: 193 QAQRANALAAARGLAD-KVSFQVGDALQQPFPD--GQFDLVWSMESGEHMPDKSKFVSEL 249
+ G + + + GD L + + + +++ + + P+ + E
Sbjct: 216 MDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIF-VNNFAFGPEVDHQLKER 274
Query: 250 ARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL 309
G I+ + + AP + + I L S+
Sbjct: 275 FANMKE-GGRIVSS---KPFAPLNFRINSRNLSDIGTIMRVVELSPLK---------GSV 321
Query: 310 SLEDIKAEDWSQNVAPFWPAVIHSALTWKGFTSL 343
S W+ ++ I + F+SL
Sbjct: 322 S--------WTGKPVSYYLHTIDRTILENYFSSL 347
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* Length = 433 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 5e-05
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 15/97 (15%)
Query: 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSP--VQAQRA 197
+M+ L + V + V+D+ CG+G + LA + A G+ P V+ +
Sbjct: 273 KMVARALEWLDVQPE-----DRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQ 326
Query: 198 NALAAARGLADKVSFQVGDA----LQQPFPDGQFDLV 230
N A GL V+F + +QP+ FD V
Sbjct: 327 N--ARLNGL-QNVTFYHENLEEDVTKQPWAKNGFDKV 360
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221
VDVGCG GG + LA + I +P GL D V+ GDA +
Sbjct: 37 AVDVGCGTGGVTLELAG-RVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL 95
Query: 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261
D+ SG + + + + P G II+
Sbjct: 96 CKIPDIDIAVVGGSGGELQE---ILRIIKDKLKPGGRIIV 132
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 1e-04
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQ 213
KN++++G IG SS A T+ + Q A A ++V
Sbjct: 69 MNNVKNILEIGTAIGYSSMQFAS-ISDDIHVTTIERNETMIQYAKQNLATYHFENQVRII 127
Query: 214 VGDALQ--QPFPDGQFDLV 230
G+AL+ + D +D++
Sbjct: 128 EGNALEQFENVNDKVYDMI 146
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 1e-04
Identities = 18/127 (14%), Positives = 39/127 (30%), Gaps = 20/127 (15%)
Query: 148 FAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA 207
R + V+D+G G G + LA+ + ++ + +
Sbjct: 223 LQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAE----VVGVEDDLA---SVLSLQKGL 275
Query: 208 D----KVSFQVGDALQQPFPDGQFDLVWS-------MESGEHMPDKSKFVSELARVTAPA 256
+ K D + + +FD++ + + FV+ A P
Sbjct: 276 EANALKAQALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQ--AFVNVAAARLRPG 333
Query: 257 GTIIIVT 263
G +V+
Sbjct: 334 GVFFLVS 340
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQ 213
K V+++G G S+ +A + Q I P A G+A+K+S +
Sbjct: 70 LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLR 129
Query: 214 VGDA------LQQPFPDGQFDLV 230
+G A L Q P +FDL+
Sbjct: 130 LGPALATLEQLTQGKPLPEFDLI 152
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 8/83 (9%)
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQ 213
+ K V+D+G G S+ + IT A GL+DK+ +
Sbjct: 62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLR 121
Query: 214 VGDA------LQQPFPDGQFDLV 230
+ A L Q+DL+
Sbjct: 122 LSPAKDTLAELIHAGQAWQYDLI 144
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 2e-04
Identities = 13/101 (12%), Positives = 31/101 (30%), Gaps = 24/101 (23%)
Query: 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCG---IGGSSRYLAKKF-GAKCQGITLSPVQAQ 195
I + + + + +++G G + +A+KF K +
Sbjct: 41 TPISRYI----FLKTFLRGGEVALEIGTGHTAMMAL---MAEKFFNCKVTATEVDE---- 89
Query: 196 RANALAAAR------GLADKVSFQVGDALQQPFPDGQFDLV 230
AR ++ G + + +G FD++
Sbjct: 90 --EFFEYARRNIERNNSNVRLVKSNGGII-KGVVEGTFDVI 127
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 9/84 (10%)
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQ 213
K ++VG G S A + + + G+ K++F
Sbjct: 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFI 127
Query: 214 VGDAL-------QQPFPDGQFDLV 230
DA+ Q +G +D
Sbjct: 128 ESDAMLALDNLLQGQESEGSYDFG 151
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A Length = 176 | Back alignment and structure |
|---|
Score = 40.2 bits (93), Expect = 3e-04
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 194 AQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMESGEHM-PDKSKFVSELAR 251
+ L A G +VS + L Q + FD++ S ++ ++E+AR
Sbjct: 30 KGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEILAEIAR 89
Query: 252 VTAPAGTIII 261
+ P G + +
Sbjct: 90 ILRPGGCLFL 99
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 9/83 (10%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQV 214
KN +++G G S A + + + + + + G+ K+ F+
Sbjct: 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFRE 137
Query: 215 GDAL-------QQPFPDGQFDLV 230
G AL + G +D +
Sbjct: 138 GPALPVLDEMIKDEKNHGSYDFI 160
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 3e-04
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 19/82 (23%)
Query: 157 KRPKNVVDVGCG-----IGGSSRYLAKKFGAK-CQGITLSP--VQAQRANALAAARGLAD 208
+P V DVG G I A K GAK +S + A N AA G+ D
Sbjct: 59 VKPLTVADVGTGSGILAIA------AHKLGAKSVLATDISDESMTAAEEN--AALNGIYD 110
Query: 209 KVSFQVGDALQQPFPDGQFDLV 230
++ Q L DG+FDL+
Sbjct: 111 -IALQKTSLLAD--VDGKFDLI 129
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Length = 278 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 4e-04
Identities = 25/138 (18%), Positives = 42/138 (30%), Gaps = 17/138 (12%)
Query: 154 DPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213
K + VVD+ GIG S +A AK I P + + D++S
Sbjct: 121 KVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAY 180
Query: 214 VGDALQQPFPDGQFDLVWSMESGEHM--PDKSK-FVSELARVTAPAGTIIIVTWCHRDLA 270
D P + D + M ++ F+ + + I
Sbjct: 181 NMDNRDFP-GENIADRI-------LMGYVVRTHEFIPKALSIAKDGAIIHYHNTVP---- 228
Query: 271 PSEESLQPWEQELLKKIC 288
E+ + E K+I
Sbjct: 229 --EKLMPREPFETFKRIT 244
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Length = 203 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 4e-04
Identities = 23/191 (12%), Positives = 46/191 (24%), Gaps = 31/191 (16%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPV---QAQRANALAAARGL------- 206
V+ CG +L+ + G G LS +
Sbjct: 21 VPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVY 79
Query: 207 -ADKVSFQVGDALQ-QPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIV 262
A + GD G + + +P + ++V L + A + +++
Sbjct: 80 AAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 139
Query: 263 TWCHRDLAPSEESLQPW---EQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319
T + + P+ + L W V + A
Sbjct: 140 TLEYD---QALLEGPPFSVPQTWL-----HRVMSGNWE-----VTKVGGQDTLHSSARGL 186
Query: 320 SQNVAPFWPAV 330
+ V
Sbjct: 187 KAGLERMDEHV 197
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} Length = 317 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 5e-04
Identities = 39/227 (17%), Positives = 74/227 (32%), Gaps = 33/227 (14%)
Query: 69 SFSRKLITRASSTTSTTTMSDAAARELKEGIAEFYDESSSLWEDIW---GDHMHHGFYEP 125
+ +RK T S + A E + + E +S + D W + +
Sbjct: 3 AMARKKNTSDQSRSQAANTPIAGTYEGEYSVIELEADSYT--TDGWLISINGVPS----- 55
Query: 126 DSSVSVSDHRAAQ---VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-G 181
S + + +A + +R I R + + +G G +RY A +
Sbjct: 56 -SHIVLGQPQALEFEYMRWIATGARAF-IDAHQDASKLRITHLGGGACTMARYFADVYPQ 113
Query: 182 AKCQGITLSPVQAQRANALAAAR---GLAD--KVSFQVGDALQ--QPFPDGQFDLVWS-M 233
++ + L +R + +V +V DA + F D++ +
Sbjct: 114 SRNTVVELDAE------LARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDV 167
Query: 234 ESGEHMP---DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQ 277
+G P +F R AP G + H DL ++ L
Sbjct: 168 FAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELA 214
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 5e-04
Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 162 VVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
VVDVG G GG L + L A A+ GL+ + VG
Sbjct: 173 VVDVGGGSGGLLSALLTAHEDLSGTVLDLQGP-ASAAHRRFLDTGLSGRAQVVVGS 227
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQVG 215
+ K ++++G G S+ ++A++ A Q +TL AQ A G+ +V+ + G
Sbjct: 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREG 122
Query: 216 DA---LQQPFPDGQFDLV 230
A L+ FDL+
Sbjct: 123 PALQSLESLGECPAFDLI 140
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 5e-04
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQVG 215
R K V+++G G S+ ++ Q IT + + A+ K+ ++G
Sbjct: 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLG 119
Query: 216 DA------LQQPFPDGQFDLV 230
A L + QFD +
Sbjct: 120 PALDTLHSLLNEGGEHQFDFI 140
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 6e-04
Identities = 15/80 (18%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQ 213
P ++++G IG S+ +A+ + +++ + + A+ A GL ++
Sbjct: 52 MAAPARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGLESRIELL 110
Query: 214 VGDA---LQQPFPDGQFDLV 230
GDA ++ FD++
Sbjct: 111 FGDALQLGEKLELYPLFDVL 130
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 6e-04
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 26/101 (25%)
Query: 141 MIEETLRFAGVSEDPTKRPKNVVDVGCG---IGGSSRYLAKKFGAKCQGITLSPVQAQRA 197
++E L K V D+G G IG S +AK A +S
Sbjct: 111 LVELALELI-----RKYGIKTVADIGTGSGAIGVS---VAKFSDAIVFATDVSS------ 156
Query: 198 NALAAAR------GLADKVSFQVGDALQQPFPD--GQFDLV 230
A+ AR G++D+ + G+ L +PF + +++
Sbjct: 157 KAVEIARKNAERHGVSDRFFVRKGEFL-EPFKEKFASIEMI 196
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E Length = 246 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 6e-04
Identities = 31/138 (22%), Positives = 48/138 (34%), Gaps = 34/138 (24%)
Query: 152 SEDPTKRPKNVVDVGCGIGGSSRYLAKKF------G----AKCQGITLSPVQAQRANALA 201
+ TK+ + D+GCG GG L+ F G + + A R N A
Sbjct: 44 NGQMTKKVT-IADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNN-TA 101
Query: 202 AARGLADKVSFQVGDA---LQQPFPDGQFDLVWSMESGEHMPD---KSK----------F 245
+ G ++ G+A L F GQ ++ PD K +
Sbjct: 102 SKHGF-QNINVLRGNAMKFLPNFFEKGQLSKMFFC-----FPDPHFKQRKHKARIITNTL 155
Query: 246 VSELARVTAPAGTIIIVT 263
+SE A V G + +T
Sbjct: 156 LSEYAYVLKEGGVVYTIT 173
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 6e-04
Identities = 26/125 (20%), Positives = 41/125 (32%), Gaps = 20/125 (16%)
Query: 111 EDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLR---FAGVSEDPTKRPKNVVDVGC 167
ED + PD+ A E R F G S VDVG
Sbjct: 130 EDFYSYLKRC----PDAGRRFLLAMKASNLAFHEIPRLLDFRGRS---------FVDVGG 176
Query: 168 GIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQ 226
G G ++ + + A+ + A ++ ++VS GD LQ+ +G
Sbjct: 177 GSGELTKAILQAEPSARGVMLDREGS-LGVARDNLSSLLAGERVSLVGGDMLQEVPSNG- 234
Query: 227 FDLVW 231
D+
Sbjct: 235 -DIYL 238
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 7e-04
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 13/83 (15%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLAD----K 209
V+DVGCG G S A+ + +TL V A A+ A+R +
Sbjct: 193 TPHTKGKVLDVGCGAGVLSVAFARHSPKIR---LTLCDVSAP---AVEASRATLAANGVE 246
Query: 210 VSFQVGDALQQPFPDGQFDLVWS 232
+ + G+FD++ S
Sbjct: 247 GEVFASNVFSE--VKGRFDMIIS 267
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 379 | |||
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.96 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.96 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.94 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.94 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.92 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.91 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.9 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.9 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.9 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.89 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.89 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.89 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.88 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.88 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.88 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.88 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.88 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.88 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.88 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.88 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.87 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.87 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.87 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.87 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.86 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.86 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.86 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.86 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.86 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.85 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.85 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.85 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.85 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.84 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.84 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.84 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.84 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.83 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.83 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.83 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.83 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.83 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.82 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.82 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.82 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.82 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.82 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.82 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.82 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.81 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.81 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.81 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.81 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.81 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.81 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.81 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.81 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.81 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.8 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.8 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.8 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.8 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.8 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.8 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.79 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.79 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.78 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.78 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.77 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.77 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.77 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.77 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.77 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.77 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.77 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.77 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.77 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.76 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.76 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.76 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.75 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.75 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.75 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.75 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.74 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.74 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.74 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.73 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.73 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.73 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.73 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.72 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.72 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.72 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.71 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.71 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.71 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.71 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.7 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.7 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.69 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.69 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.69 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.69 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.69 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.69 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.69 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.69 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.69 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.68 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.68 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.68 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.68 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.68 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.68 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.67 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.67 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.67 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.67 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.67 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.67 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.67 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.67 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.66 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.66 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.66 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.66 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.65 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.65 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.65 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.64 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.64 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.64 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.64 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.64 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.63 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.63 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.63 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.63 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.62 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.62 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.62 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.61 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.61 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.61 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.61 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.61 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.61 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.61 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.61 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.61 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.6 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.6 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.6 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.6 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.6 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.6 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.6 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.6 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.6 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.6 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.6 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.6 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.59 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.59 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.58 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.58 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.58 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.58 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.58 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.58 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.57 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.57 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.57 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.56 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.56 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.56 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.56 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.56 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.56 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.56 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.55 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.55 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.54 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.54 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.54 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.54 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.54 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.54 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.53 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.53 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.53 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.52 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.52 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.51 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.5 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.5 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.49 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.49 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.49 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.49 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.48 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.48 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.47 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.47 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.46 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.46 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.46 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.46 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.45 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.45 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.45 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.42 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.39 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.39 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.39 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.37 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.37 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.37 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.36 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.36 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.36 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.36 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.36 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.35 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.35 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.34 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.34 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.34 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.34 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.34 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.34 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.33 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.32 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.32 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.31 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.31 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.31 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.3 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.3 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.3 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.3 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.28 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 99.28 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.28 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.27 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.26 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.24 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.21 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.2 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.2 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.18 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.16 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.15 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.14 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.11 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.11 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.08 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.07 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.05 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.04 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 99.01 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.01 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.01 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.99 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.98 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.93 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.91 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.89 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.86 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.85 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.84 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.83 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.83 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.82 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.8 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.79 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.76 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.7 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.7 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.67 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.61 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.61 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.41 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.37 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.34 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.33 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.32 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.3 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.2 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.11 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.11 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.08 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 98.07 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 98.02 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.92 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.91 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.89 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.81 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.55 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.52 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.35 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.28 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.26 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.2 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 96.84 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.74 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.68 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.44 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.36 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.14 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 96.09 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.96 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.92 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 95.91 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 95.87 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.84 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.84 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.81 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.79 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.7 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 95.62 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 95.51 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.46 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.32 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 95.31 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 95.28 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 95.22 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 95.16 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 95.16 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 95.15 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 95.0 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 95.0 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.98 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 94.88 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.87 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 94.85 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 94.77 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 94.76 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 94.75 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 94.74 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 94.72 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 94.71 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 94.7 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 94.69 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 94.69 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 94.59 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.52 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.51 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.5 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 94.5 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 94.46 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 94.46 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 94.41 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 94.38 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 94.38 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 94.29 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 94.19 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 94.09 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 94.01 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 94.01 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 94.0 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 93.94 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 93.85 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 93.79 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 93.71 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 93.7 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 93.65 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 93.59 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 93.52 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 93.17 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 93.17 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 93.16 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 93.1 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 93.05 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 93.03 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 92.87 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 92.68 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 92.57 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 92.51 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 92.48 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 92.36 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 92.29 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 92.18 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 91.96 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 91.87 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 91.81 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 91.71 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 91.64 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 91.59 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 91.4 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 91.22 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 91.06 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 90.83 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 90.77 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 90.73 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 90.62 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 90.45 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 90.45 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 90.38 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 90.37 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 90.33 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 90.09 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 89.87 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 89.86 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 89.79 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 89.43 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 89.4 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 89.35 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 89.34 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 88.99 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 88.94 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 88.87 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 88.68 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 88.52 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 87.92 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 87.82 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 87.58 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 87.54 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 87.31 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 87.19 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 87.15 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 86.85 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 86.76 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 86.6 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 86.57 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 86.46 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 86.42 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 85.76 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 85.74 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 85.63 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 85.55 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 85.39 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 85.24 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 84.88 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 84.83 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 84.55 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 84.26 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 83.99 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 83.75 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 83.72 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 83.69 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 83.67 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 83.35 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 82.74 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 82.47 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 81.66 | |
| 2km1_A | 136 | Protein DRE2; yeast, antiapoptotic, protein bindin | 81.37 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 81.27 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 81.0 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 80.87 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 80.1 |
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-28 Score=221.06 Aligned_cols=223 Identities=30% Similarity=0.499 Sum_probs=167.2
Q ss_pred HHHHHHHccCchhHHHhhhccccccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHH
Q 016981 97 EGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYL 176 (379)
Q Consensus 97 ~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l 176 (379)
+.+..|||..++.|+.+++..++.+||...... .....++..+.+.+++.+++.+ +.+|||+|||+|.++..+
T Consensus 7 ~~~~~~Yd~~~~~y~~~~~~~~~~~y~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~-----~~~vLDiGcG~G~~~~~l 79 (273)
T 3bus_A 7 EEVRQMYDDFTDPFARIWGENLHFGYWEDAGAD--VSVDDATDRLTDEMIALLDVRS-----GDRVLDVGCGIGKPAVRL 79 (273)
T ss_dssp ----------------CCGGGCCCCCCCCSSCC--CCHHHHHHHHHHHHHHHSCCCT-----TCEEEEESCTTSHHHHHH
T ss_pred HHHHHHHcchHHHHHHHcCCCceEEecCCCccc--cCHHHHHHHHHHHHHHhcCCCC-----CCEEEEeCCCCCHHHHHH
Confidence 458889999999999999999999999776531 1267778888899999887655 889999999999999999
Q ss_pred HHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCC
Q 016981 177 AKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPA 256 (379)
Q Consensus 177 ~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~Lkpg 256 (379)
++..+.+|+|+|+|+.+++.+++++...++++++.+..+|+.++++++++||+|++..+++|++++..+++++.++||||
T Consensus 80 ~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg 159 (273)
T 3bus_A 80 ATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPG 159 (273)
T ss_dssp HHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEE
T ss_pred HHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCC
Confidence 98778899999999999999999999888877899999999999988899999999999999999999999999999999
Q ss_pred CEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEecCCCcccchHHHHH
Q 016981 257 GTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIH 332 (379)
Q Consensus 257 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~~~~~~~ 332 (379)
|++++.++...... .......+......+....+.+.+++.++|+++||++++++.+..+..+++..+..
T Consensus 160 G~l~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~ 229 (273)
T 3bus_A 160 GTVAIADFVLLAPV------EGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVDISAQARPSLVKTAE 229 (273)
T ss_dssp EEEEEEEEEESSCC------CHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEEEECHHHHTTHHHHHHH
T ss_pred eEEEEEEeeccCCC------ChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEEEECcHhHHHHHHHHHH
Confidence 99999987644311 11111122222222223346799999999999999999998877666555544443
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-28 Score=222.16 Aligned_cols=223 Identities=26% Similarity=0.477 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHHccC--chhHHHhhh-ccccccccCCCCCCCcchHHHHHHHHHHHHHHHc----CCCCCCCCCCCEEEE
Q 016981 92 ARELKEGIAEFYDES--SSLWEDIWG-DHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFA----GVSEDPTKRPKNVVD 164 (379)
Q Consensus 92 ~~~~~~~i~~~yd~~--~~~y~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~vLD 164 (379)
.....+.+..|||.. ..+|+..|+ ++++.+||...... ........+.++.+++.+ .+.+ +.+|||
T Consensus 16 ~~~~~~~~~~~Yd~~~~~~~y~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~vLD 88 (297)
T 2o57_A 16 SKTVKDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQ--DEIREASLRTDEWLASELAMTGVLQR-----QAKGLD 88 (297)
T ss_dssp CHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCSCCCCSSGGG--SCHHHHHHHHHHHHHHHHHHTTCCCT-----TCEEEE
T ss_pred HHHHHHHHHHHcCCccchhHHHHHhCCCceEEEecCCCCCC--cchHHHHHHHHHHHHHHhhhccCCCC-----CCEEEE
Confidence 445567789999987 488988885 68889999765100 126677777888888887 5554 889999
Q ss_pred eCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCHHH
Q 016981 165 VGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSK 244 (379)
Q Consensus 165 iGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~ 244 (379)
+|||+|.++..+++.++.+|+|+|+|+.+++.|+++....++++++.+..+|+.++|+++++||+|++..+++|++++..
T Consensus 89 iGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~ 168 (297)
T 2o57_A 89 LGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLK 168 (297)
T ss_dssp ETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHH
T ss_pred eCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchhhhcCCHHH
Confidence 99999999999999877899999999999999999999888878999999999999998899999999999999999999
Q ss_pred HHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEecCCCcc
Q 016981 245 FVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVA 324 (379)
Q Consensus 245 ~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~ 324 (379)
++++++++|||||++++.++........ ..+ ..++. ....+.+.+.+++.++|+++||+++++.++...+.
T Consensus 169 ~l~~~~~~LkpgG~l~~~~~~~~~~~~~-~~~----~~~~~----~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~ 239 (297)
T 2o57_A 169 VFQECARVLKPRGVMAITDPMKEDGIDK-SSI----QPILD----RIKLHDMGSLGLYRSLAKECGLVTLRTFSRPDSLV 239 (297)
T ss_dssp HHHHHHHHEEEEEEEEEEEEEECTTCCG-GGG----HHHHH----HHTCSSCCCHHHHHHHHHHTTEEEEEEEECHHHHH
T ss_pred HHHHHHHHcCCCeEEEEEEeccCCCCch-HHH----HHHHH----HhcCCCCCCHHHHHHHHHHCCCeEEEEEECchhhH
Confidence 9999999999999999998765432211 111 12222 12233456899999999999999999988766555
Q ss_pred cchHHH
Q 016981 325 PFWPAV 330 (379)
Q Consensus 325 ~~~~~~ 330 (379)
++|...
T Consensus 240 ~~~~~~ 245 (297)
T 2o57_A 240 HHYSKV 245 (297)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-25 Score=204.61 Aligned_cols=217 Identities=17% Similarity=0.200 Sum_probs=169.9
Q ss_pred HHHHHHHHHHccCchhHHHhhhcccc--ccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccH
Q 016981 94 ELKEGIAEFYDESSSLWEDIWGDHMH--HGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGG 171 (379)
Q Consensus 94 ~~~~~i~~~yd~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~ 171 (379)
..++.+..|||..+++|..+++..++ .++|..... ....++...++.+++.+++.+ +.+|||||||+|.
T Consensus 15 ~~~~~i~~~Yd~~~~~y~~~l~~~~~y~~~~~~~~~~----~l~~a~~~~~~~~~~~~~~~~-----~~~vLDiGcG~G~ 85 (302)
T 3hem_A 15 PPVEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDM----TLEEAQYAKRKLALDKLNLEP-----GMTLLDIGCGWGS 85 (302)
T ss_dssp CCHHHHHHHHTSCHHHHHHHSCTTCCCSCCCCSSTTC----CHHHHHHHHHHHHHHTTCCCT-----TCEEEEETCTTSH
T ss_pred chHHHHHHhcCCCHHHHHHhcCCCCceeeEEecCCCC----CHHHHHHHHHHHHHHHcCCCC-----cCEEEEeeccCcH
Confidence 44677999999999999999887544 456665432 267788888999999887665 8899999999999
Q ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCH---------
Q 016981 172 SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--------- 242 (379)
Q Consensus 172 ~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~--------- 242 (379)
++..+++.++.+|+|+|+|+.+++.|++++...+++.++.+..+|+.++ +++||+|++..+++|++++
T Consensus 86 ~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~ 162 (302)
T 3hem_A 86 TMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLGAFEHFADGAGDAGFERY 162 (302)
T ss_dssp HHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCSEEEEESCGGGTTCCSSCCCTTHH
T ss_pred HHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCccEEEEcchHHhcCccccccchhHH
Confidence 9999999877899999999999999999999998877999999999876 6899999999999999765
Q ss_pred HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccc-c--chH---HHHHHHH-HhhccCCCCCCCHHHHHHHHHhCCCceeE
Q 016981 243 SKFVSELARVTAPAGTIIIVTWCHRDLAPSEES-L--QPW---EQELLKK-ICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (379)
Q Consensus 243 ~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~-~--~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 315 (379)
..+++++.++|||||++++.++........... . ... ...++.. +.+.. .+.+.+++.++++++||++++
T Consensus 163 ~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~s~~~~~~~l~~aGf~~~~ 239 (302)
T 3hem_A 163 DTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGG---RLPRISQVDYYSSNAGWKVER 239 (302)
T ss_dssp HHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTC---CCCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCC---CCCCHHHHHHHHHhCCcEEEE
Confidence 799999999999999999998765432100000 0 000 0012221 11222 245899999999999999999
Q ss_pred EEecCCCccc
Q 016981 316 AEDWSQNVAP 325 (379)
Q Consensus 316 ~~~~~~~~~~ 325 (379)
++++..+...
T Consensus 240 ~~~~~~~y~~ 249 (302)
T 3hem_A 240 YHRIGANYVP 249 (302)
T ss_dssp EEECGGGHHH
T ss_pred EEeCchhHHH
Confidence 9887666443
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=205.90 Aligned_cols=216 Identities=18% Similarity=0.181 Sum_probs=164.9
Q ss_pred HHHHHHHHccCchhHHHhhhcccc--ccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHH
Q 016981 96 KEGIAEFYDESSSLWEDIWGDHMH--HGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSS 173 (379)
Q Consensus 96 ~~~i~~~yd~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~ 173 (379)
.+.++.|||..+++|+.+++..++ .++|..... ....++...++.+++.+++.+ +.+|||||||+|.++
T Consensus 9 ~~~i~~~Yd~~~~~~~~~~~~~~~y~~~~~~~~~~----~l~~a~~~~~~~~~~~~~~~~-----~~~vLDiGcG~G~~~ 79 (287)
T 1kpg_A 9 FANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDM----TLQEAQIAKIDLALGKLGLQP-----GMTLLDVGCGWGATM 79 (287)
T ss_dssp HHHHHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTC----CHHHHHHHHHHHHHTTTTCCT-----TCEEEEETCTTSHHH
T ss_pred HHHHHHhcCCCHHHHHHhcCCCCCcceEEecCCCC----CHHHHHHHHHHHHHHHcCCCC-----cCEEEEECCcccHHH
Confidence 456999999999999988887643 567765432 267778888888888877654 889999999999999
Q ss_pred HHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCC--CCHHHHHHHHHH
Q 016981 174 RYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHM--PDKSKFVSELAR 251 (379)
Q Consensus 174 ~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~--~~~~~~l~~~~r 251 (379)
..+++..+.+|+|+|+|+.+++.|++++...++.+++.+..+|+.+++ ++||+|++..+++|+ .++..+++++.+
T Consensus 80 ~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~ 156 (287)
T 1kpg_A 80 MRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHR 156 (287)
T ss_dssp HHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeCchhhcChHHHHHHHHHHHH
Confidence 999976688999999999999999999998887778999999998765 789999999999999 678999999999
Q ss_pred hcCCCCEEEEEeccCCCCCCC---ccccchHHHHHHHHHhhc-cCCCCCCCHHHHHHHHHhCCCceeEEEecCCCc
Q 016981 252 VTAPAGTIIIVTWCHRDLAPS---EESLQPWEQELLKKICDA-YYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNV 323 (379)
Q Consensus 252 ~LkpgG~l~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~ 323 (379)
+|||||++++.++........ ..............+... +....+.+.+++.++++++||+++++..+..+.
T Consensus 157 ~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~y 232 (287)
T 1kpg_A 157 LLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQPHY 232 (287)
T ss_dssp HSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEEECHHHH
T ss_pred hcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHHHHHhCCcEEEEEEeCcHhH
Confidence 999999999998764431110 000000000111111111 111234589999999999999999998765543
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-24 Score=201.12 Aligned_cols=218 Identities=17% Similarity=0.186 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHccCchhHHHhhhcccc--ccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCccc
Q 016981 93 RELKEGIAEFYDESSSLWEDIWGDHMH--HGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIG 170 (379)
Q Consensus 93 ~~~~~~i~~~yd~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG 170 (379)
...++.+..+||..+++|+.+++..++ .++|..... ....++...+..+++.+++.+ +.+|||+|||+|
T Consensus 32 ~~~~~~i~~~Yd~~~~~~~~~~~~~~~y~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~-----~~~vLDiGcG~G 102 (318)
T 2fk8_A 32 RTRFEDIQAHYDVSDDFFALFQDPTRTYSCAYFEPPEL----TLEEAQYAKVDLNLDKLDLKP-----GMTLLDIGCGWG 102 (318)
T ss_dssp ------CGGGGCCCHHHHTTTSCTTCCCSCCCCSSTTC----CHHHHHHHHHHHHHTTSCCCT-----TCEEEEESCTTS
T ss_pred hhhHHHHHHhcCCCHHHHHHHcCCCCCcceeeeCCCCC----CHHHHHHHHHHHHHHhcCCCC-----cCEEEEEcccch
Confidence 455667889999999999888876543 456664332 267777888888888877654 889999999999
Q ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCC--CCHHHHHHH
Q 016981 171 GSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHM--PDKSKFVSE 248 (379)
Q Consensus 171 ~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~--~~~~~~l~~ 248 (379)
.++..+++.++.+|+|+|+|+.+++.|++++...++.+++.+..+|+.+++ ++||+|++..+++|+ +++..++++
T Consensus 103 ~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~ 179 (318)
T 2fk8_A 103 TTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEAFEHFGHENYDDFFKR 179 (318)
T ss_dssp HHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEESCGGGTCGGGHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeChHHhcCHHHHHHHHHH
Confidence 999999987778999999999999999999998888778999999998774 789999999999999 578999999
Q ss_pred HHHhcCCCCEEEEEeccCCCCCCCcc---ccchHHHHHHHHHhhc-cCCCCCCCHHHHHHHHHhCCCceeEEEecCCC
Q 016981 249 LARVTAPAGTIIIVTWCHRDLAPSEE---SLQPWEQELLKKICDA-YYLPAWCSTADYVKLLQSLSLEDIKAEDWSQN 322 (379)
Q Consensus 249 ~~r~LkpgG~l~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 322 (379)
+.++|||||++++.++.......... .+......+...+... +....+.+.+++.++|+++||+++++..+..+
T Consensus 180 ~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~ 257 (318)
T 2fk8_A 180 CFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLRPH 257 (318)
T ss_dssp HHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTTCBCCCCEECHHH
T ss_pred HHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHHHHHHhCCCEEEEEEecchh
Confidence 99999999999999876543210000 0000000011111111 11123458999999999999999988766543
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-24 Score=199.88 Aligned_cols=176 Identities=25% Similarity=0.410 Sum_probs=141.0
Q ss_pred HHHHHHHHcC-CCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 141 MIEETLRFAG-VSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 141 ~~~~~l~~~~-~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
....+++.++ +. ++.+|||+|||+|.++..+++.++.+|+|+|+|+.+++.|++++...++.+++.+..+|+.+
T Consensus 104 ~~~~l~~~l~~~~-----~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 178 (312)
T 3vc1_A 104 QAEFLMDHLGQAG-----PDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLD 178 (312)
T ss_dssp HHHHHHTTSCCCC-----TTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred HHHHHHHHhccCC-----CCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhc
Confidence 3444555554 33 48899999999999999999987789999999999999999999999887799999999999
Q ss_pred CCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCH
Q 016981 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCST 299 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (379)
+++++++||+|++..+++|+ ++..+++++.++|||||++++.++....... ....... .+... +.+.+.+.
T Consensus 179 ~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~---~~~~~~~-~~~~~----~~~~~~s~ 249 (312)
T 3vc1_A 179 TPFDKGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYG---QPSKWVS-QINAH----FECNIHSR 249 (312)
T ss_dssp CCCCTTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTC---SCCHHHH-HHHHH----HTCCCCBH
T ss_pred CCCCCCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEcccccccc---chhHHHH-HHHhh----hcCCCCCH
Confidence 99888999999999999999 6999999999999999999999876554321 1222222 12111 12236689
Q ss_pred HHHHHHHHhCCCceeEEEecCCCcccchHHH
Q 016981 300 ADYVKLLQSLSLEDIKAEDWSQNVAPFWPAV 330 (379)
Q Consensus 300 ~~~~~~l~~aGF~~v~~~~~~~~~~~~~~~~ 330 (379)
+++.++|+++||++++++++.....++|...
T Consensus 250 ~~~~~~l~~aGf~~~~~~~~~~~~~~~w~~~ 280 (312)
T 3vc1_A 250 REYLRAMADNRLVPHTIVDLTPDTLPYWELR 280 (312)
T ss_dssp HHHHHHHHTTTEEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEEeCCHHHHHHHHHH
Confidence 9999999999999999998875555555443
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=182.91 Aligned_cols=163 Identities=18% Similarity=0.209 Sum_probs=132.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
.++.+++.+.+.+ +.+|||+|||+|.++..+++..+.+|+|+|+|+.+++.|+++++..++.+++.+.++|+.++
T Consensus 24 ~~~~l~~~~~~~~-----~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 98 (256)
T 1nkv_A 24 KYATLGRVLRMKP-----GTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY 98 (256)
T ss_dssp HHHHHHHHTCCCT-----TCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred HHHHHHHhcCCCC-----CCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhC
Confidence 4566666666554 88999999999999999999877899999999999999999999888877899999999998
Q ss_pred CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (379)
++ +++||+|++..+++|++++..++++++++|||||++++.+........ .. .+ ...........+.+.+
T Consensus 99 ~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~-----~~---~~-~~~~~~~~~~~~~~~~ 168 (256)
T 1nkv_A 99 VA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPA-----TE---EI-AQACGVSSTSDFLTLP 168 (256)
T ss_dssp CC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCS-----SH---HH-HHTTTCSCGGGSCCHH
T ss_pred Cc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCC-----hH---HH-HHHHhcccccccCCHH
Confidence 87 789999999999999999999999999999999999998754322111 11 11 1111111122466899
Q ss_pred HHHHHHHhCCCceeEEEe
Q 016981 301 DYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 301 ~~~~~l~~aGF~~v~~~~ 318 (379)
++.++|+++||+++++..
T Consensus 169 ~~~~~l~~aGf~~~~~~~ 186 (256)
T 1nkv_A 169 GLVGAFDDLGYDVVEMVL 186 (256)
T ss_dssp HHHHHHHTTTBCCCEEEE
T ss_pred HHHHHHHHCCCeeEEEEe
Confidence 999999999999988753
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=183.58 Aligned_cols=169 Identities=22% Similarity=0.322 Sum_probs=132.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
.+..+++.++..+ +.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|++++...++ +++.+.++|++++
T Consensus 25 ~~~~l~~~l~~~~-----~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~l 97 (260)
T 1vl5_A 25 DLAKLMQIAALKG-----NEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQM 97 (260)
T ss_dssp CHHHHHHHHTCCS-----CCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CC
T ss_pred HHHHHHHHhCCCC-----CCEEEEEeCCCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEecHHhC
Confidence 3455566655544 889999999999999999987 46999999999999999999988876 4899999999999
Q ss_pred CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (379)
++++++||+|++..+++|++|+..++++++++|||||++++.++..+.. ..+..+. ........... ...++.+
T Consensus 98 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~-~~~~~~~ 171 (260)
T 1vl5_A 98 PFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPEN----DAFDVFY-NYVEKERDYSH-HRAWKKS 171 (260)
T ss_dssp CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSS----HHHHHHH-HHHHHHHCTTC-CCCCBHH
T ss_pred CCCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCC----HHHHHHH-HHHHHhcCccc-cCCCCHH
Confidence 9988999999999999999999999999999999999999987654321 1111111 11111111111 2356899
Q ss_pred HHHHHHHhCCCceeEEEecCCC
Q 016981 301 DYVKLLQSLSLEDIKAEDWSQN 322 (379)
Q Consensus 301 ~~~~~l~~aGF~~v~~~~~~~~ 322 (379)
++.++|+++||+++.+..+...
T Consensus 172 ~~~~~l~~aGf~~~~~~~~~~~ 193 (260)
T 1vl5_A 172 DWLKMLEEAGFELEELHCFHKT 193 (260)
T ss_dssp HHHHHHHHHTCEEEEEEEEEEE
T ss_pred HHHHHHHHCCCeEEEEEEeecc
Confidence 9999999999999888776543
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=183.88 Aligned_cols=154 Identities=15% Similarity=0.151 Sum_probs=119.1
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~ 234 (379)
++.+|||+|||+|..+..+++.+ +++|+|+|+|+.|++.|+++++..+...+++++++|+.++|+ +.||+|+++.
T Consensus 70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~--~~~d~v~~~~ 147 (261)
T 4gek_A 70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVVLNF 147 (261)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC--CSEEEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc--cccccceeee
Confidence 38999999999999999999875 569999999999999999999988877799999999999876 4699999999
Q ss_pred ccCCCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhc--c-------------CCCCCC
Q 016981 235 SGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA--Y-------------YLPAWC 297 (379)
Q Consensus 235 ~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------------~~~~~~ 297 (379)
+++|+++. ..+|++++++|||||+|++.+....... ................ + ......
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~----~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~ 223 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDA----KVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTD 223 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSH----HHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCB
T ss_pred eeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCC
Confidence 99999754 5789999999999999999986543321 1111111111111000 0 001235
Q ss_pred CHHHHHHHHHhCCCceeEEE
Q 016981 298 STADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 298 ~~~~~~~~l~~aGF~~v~~~ 317 (379)
+.+++.++|+++||+.|++.
T Consensus 224 s~~~~~~~L~~AGF~~ve~~ 243 (261)
T 4gek_A 224 SVETHKARLHKAGFEHSELW 243 (261)
T ss_dssp CHHHHHHHHHHHTCSEEEEE
T ss_pred CHHHHHHHHHHcCCCeEEEE
Confidence 88999999999999998763
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=183.41 Aligned_cols=153 Identities=18% Similarity=0.254 Sum_probs=126.6
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
++.+|||+|||+|.++..+++..+.+|+|+|+|+.+++.|++++...++++++.+.++|+.++++++++||+|++..+++
T Consensus 46 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 125 (257)
T 3f4k_A 46 DDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIY 125 (257)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCSC
T ss_pred CCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecChHh
Confidence 47899999999999999999987569999999999999999999999987789999999999998889999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEE
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
|+ ++..+++++.++|||||++++.+........ .......+... .+.+.+.+++.++|+++||+++.+.
T Consensus 126 ~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~-----~~~~~~~~~~~-----~~~~~~~~~~~~~l~~aGf~~v~~~ 194 (257)
T 3f4k_A 126 NI-GFERGMNEWSKYLKKGGFIAVSEASWFTSER-----PAEIEDFWMDA-----YPEISVIPTCIDKMERAGYTPTAHF 194 (257)
T ss_dssp CC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCC-----CHHHHHHHHHH-----CTTCCBHHHHHHHHHHTTEEEEEEE
T ss_pred hc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCC-----hHHHHHHHHHh-----CCCCCCHHHHHHHHHHCCCeEEEEE
Confidence 99 8999999999999999999999854222111 11111222211 1235689999999999999999886
Q ss_pred ecCC
Q 016981 318 DWSQ 321 (379)
Q Consensus 318 ~~~~ 321 (379)
.+..
T Consensus 195 ~~~~ 198 (257)
T 3f4k_A 195 ILPE 198 (257)
T ss_dssp ECCG
T ss_pred ECCh
Confidence 5553
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-22 Score=181.15 Aligned_cols=152 Identities=17% Similarity=0.235 Sum_probs=126.8
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.|+++++..++++++.+.++|+.++++++++||+|++..+++
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~ 125 (267)
T 3kkz_A 46 EKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIY 125 (267)
T ss_dssp TTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSCGG
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCce
Confidence 48999999999999999999985569999999999999999999999988889999999999988889999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEE
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
|+ ++..+++++.++|||||++++.+........ ......++... .+.+.+.+++.++|+++||+++++.
T Consensus 126 ~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-----~~~~~~~~~~~-----~~~~~~~~~~~~~l~~aGf~~v~~~ 194 (267)
T 3kkz_A 126 NI-GFERGLNEWRKYLKKGGYLAVSECSWFTDER-----PAEINDFWMDA-----YPEIDTIPNQVAKIHKAGYLPVATF 194 (267)
T ss_dssp GT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCC-----CHHHHHHHHHH-----CTTCEEHHHHHHHHHHTTEEEEEEE
T ss_pred ec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCC-----hHHHHHHHHHh-----CCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 99 8999999999999999999999865322111 11111222111 1235689999999999999999887
Q ss_pred ecC
Q 016981 318 DWS 320 (379)
Q Consensus 318 ~~~ 320 (379)
.+.
T Consensus 195 ~~~ 197 (267)
T 3kkz_A 195 ILP 197 (267)
T ss_dssp ECC
T ss_pred ECC
Confidence 654
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-21 Score=174.05 Aligned_cols=169 Identities=22% Similarity=0.385 Sum_probs=133.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
.....++.+.+.+ +.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++ +++.+..+|++++
T Consensus 9 ~~~~~~~~~~~~~-----~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~ 81 (239)
T 1xxl_A 9 SLGLMIKTAECRA-----EHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESL 81 (239)
T ss_dssp HHHHHHHHHTCCT-----TCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBC
T ss_pred CcchHHHHhCcCC-----CCEEEEEccCcCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-CCeEEEecccccC
Confidence 3445556656654 899999999999999999987 56999999999999999999988876 4899999999999
Q ss_pred CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (379)
++++++||+|++..+++|++++..++++++++|||||++++.+...+.. ..+..+. ........... ...++.+
T Consensus 82 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~-~~~~~~~ 155 (239)
T 1xxl_A 82 PFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPED----PVLDEFV-NHLNRLRDPSH-VRESSLS 155 (239)
T ss_dssp CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSS----HHHHHHH-HHHHHHHCTTC-CCCCBHH
T ss_pred CCCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCC----hhHHHHH-HHHHHhccccc-cCCCCHH
Confidence 9888999999999999999999999999999999999999988654321 1111111 11111111211 2356899
Q ss_pred HHHHHHHhCCCceeEEEecCCC
Q 016981 301 DYVKLLQSLSLEDIKAEDWSQN 322 (379)
Q Consensus 301 ~~~~~l~~aGF~~v~~~~~~~~ 322 (379)
++.++|+++||+++.+..+..+
T Consensus 156 ~~~~ll~~aGf~~~~~~~~~~~ 177 (239)
T 1xxl_A 156 EWQAMFSANQLAYQDIQKWNLP 177 (239)
T ss_dssp HHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHHHHHHHCCCcEEEEEeecCc
Confidence 9999999999999988876544
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-22 Score=182.81 Aligned_cols=167 Identities=24% Similarity=0.471 Sum_probs=133.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
.+..+++.+++.+ +.+|||+|||+|.++..+++.++.+|+|+|+|+.+++.|+++.... +++.+.++|+.++
T Consensus 43 ~~~~~~~~~~~~~-----~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~ 114 (266)
T 3ujc_A 43 ATKKILSDIELNE-----NSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTK 114 (266)
T ss_dssp HHHHHTTTCCCCT-----TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTC
T ss_pred HHHHHHHhcCCCC-----CCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccC
Confidence 4556666665544 8899999999999999999977789999999999999999876443 5899999999999
Q ss_pred CCCCCcccEEEeccccCCC--CCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCC
Q 016981 221 PFPDGQFDLVWSMESGEHM--PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~--~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (379)
++++++||+|++..+++|+ .++..++++++++|||||++++.++..... ..+........... + ..+++
T Consensus 115 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~----~~~~~~~~~~~~~~----~-~~~~~ 185 (266)
T 3ujc_A 115 EFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEK----ENWDDEFKEYVKQR----K-YTLIT 185 (266)
T ss_dssp CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCG----GGCCHHHHHHHHHH----T-CCCCC
T ss_pred CCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCc----ccchHHHHHHHhcC----C-CCCCC
Confidence 9888999999999999999 788999999999999999999998755431 12222222222211 1 12558
Q ss_pred HHHHHHHHHhCCCceeEEEecCCCcc
Q 016981 299 TADYVKLLQSLSLEDIKAEDWSQNVA 324 (379)
Q Consensus 299 ~~~~~~~l~~aGF~~v~~~~~~~~~~ 324 (379)
.+++.++|+++||+++++..+..+..
T Consensus 186 ~~~~~~~l~~~Gf~~~~~~~~~~~~~ 211 (266)
T 3ujc_A 186 VEEYADILTACNFKNVVSKDLSDYWN 211 (266)
T ss_dssp HHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred HHHHHHHHHHcCCeEEEEEeCCHHHH
Confidence 99999999999999999887665443
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=178.85 Aligned_cols=166 Identities=23% Similarity=0.329 Sum_probs=130.4
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|++++...++ +++.+..+|+.++++++++||+|++..++
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 115 (276)
T 3mgg_A 37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI-KNVKFLQANIFSLPFEDSSFDHIFVCFVL 115 (276)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGCCSCTTCEEEEEEESCG
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCcEEEEcccccCCCCCCCeeEEEEechh
Confidence 48899999999999999999987 68999999999999999999998877 48999999999998888999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCC--CCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcee
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLA--PSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 314 (379)
+|++++..+++++.++|||||++++.+....... +...........+.. ....... ..++..++.++|+++||+++
T Consensus 116 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~l~~~l~~aGf~~v 193 (276)
T 3mgg_A 116 EHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIR-VQAYMKG-NSLVGRQIYPLLQESGFEKI 193 (276)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHH-HHHHTTC-CTTGGGGHHHHHHHTTCEEE
T ss_pred hhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHH-HHHhcCC-CcchHHHHHHHHHHCCCCeE
Confidence 9999999999999999999999999885432211 111111111111111 1111111 23467889999999999999
Q ss_pred EEEecCCCcccc
Q 016981 315 KAEDWSQNVAPF 326 (379)
Q Consensus 315 ~~~~~~~~~~~~ 326 (379)
+++....+....
T Consensus 194 ~~~~~~~~~~~~ 205 (276)
T 3mgg_A 194 RVEPRMVYIDSS 205 (276)
T ss_dssp EEEEEEEEECTT
T ss_pred EEeeEEEECCCC
Confidence 998776665543
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.8e-22 Score=180.58 Aligned_cols=177 Identities=16% Similarity=0.137 Sum_probs=132.8
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
.+.+..++..+.. ++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...++++++.++.+|+.
T Consensus 55 ~~~l~~~l~~~~~------~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 127 (285)
T 4htf_A 55 WQDLDRVLAEMGP------QKLRVLDAGGGEGQTAIKMAER-GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQ 127 (285)
T ss_dssp HHHHHHHHHHTCS------SCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGG
T ss_pred HHHHHHHHHhcCC------CCCEEEEeCCcchHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHH
Confidence 3445666666542 2679999999999999999998 78999999999999999999998887778999999999
Q ss_pred CCC-CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhh----ccCC
Q 016981 219 QQP-FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD----AYYL 293 (379)
Q Consensus 219 ~~~-~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 293 (379)
+++ +++++||+|++..+++|++++..+++++.++|||||++++.++......... ............... ....
T Consensus 128 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 206 (285)
T 4htf_A 128 DVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHN-MVAGNFDYVQAGMPKKKKRTLSP 206 (285)
T ss_dssp GTGGGCSSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHH-HHTTCHHHHHTTCCCC----CCC
T ss_pred HhhhhcCCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHH-HHhcCHHHHhhhccccccccCCC
Confidence 986 7789999999999999999999999999999999999999885422100000 000000000000000 0111
Q ss_pred CCCCCHHHHHHHHHhCCCceeEEEecCCCc
Q 016981 294 PAWCSTADYVKLLQSLSLEDIKAEDWSQNV 323 (379)
Q Consensus 294 ~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~ 323 (379)
..+++++++.++|+++||+++++..+....
T Consensus 207 ~~~~~~~~l~~~l~~aGf~v~~~~~~~~~~ 236 (285)
T 4htf_A 207 DYPRDPTQVYLWLEEAGWQIMGKTGVRVFH 236 (285)
T ss_dssp SCCBCHHHHHHHHHHTTCEEEEEEEESSSG
T ss_pred CCCCCHHHHHHHHHHCCCceeeeeeEEEee
Confidence 245689999999999999999988775443
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-22 Score=174.72 Aligned_cols=179 Identities=15% Similarity=0.145 Sum_probs=137.8
Q ss_pred HHHHHHccCchhHHHhhhccccccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHH
Q 016981 98 GIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLA 177 (379)
Q Consensus 98 ~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~ 177 (379)
.+.++|+..+..|+..+....... ......+..++... +.+|||+|||+|.++..++
T Consensus 4 ~~~~~y~~~a~~y~~~~~~~~~~~--------------~~~~~~l~~~~~~~---------~~~vLDiGcG~G~~~~~l~ 60 (203)
T 3h2b_A 4 DVSKAYSSPTFDAEALLGTVISAE--------------DPDRVLIEPWATGV---------DGVILDVGSGTGRWTGHLA 60 (203)
T ss_dssp HHHHHHHCTTTCHHHHTCSSCCTT--------------CTTHHHHHHHHHHC---------CSCEEEETCTTCHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHhhhhcccc--------------HHHHHHHHHHhccC---------CCeEEEecCCCCHHHHHHH
Confidence 477889988888877654321100 00122344444331 6789999999999999999
Q ss_pred HHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC--CHHHHHHHHHHhcCC
Q 016981 178 KKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAP 255 (379)
Q Consensus 178 ~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~r~Lkp 255 (379)
+. +.+|+|+|+|+.+++.++++. +++.+.++|+.++++++++||+|++..+++|++ ++..++++++++|||
T Consensus 61 ~~-~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~p 133 (203)
T 3h2b_A 61 SL-GHQIEGLEPATRLVELARQTH------PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVED 133 (203)
T ss_dssp HT-TCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEE
T ss_pred hc-CCeEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCC
Confidence 87 789999999999999999873 479999999999988889999999999999997 889999999999999
Q ss_pred CCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEecCC
Q 016981 256 AGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (379)
Q Consensus 256 gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 321 (379)
||++++..+.......... ......+++.+++.++|+++||+++++.....
T Consensus 134 gG~l~i~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 184 (203)
T 3h2b_A 134 GGGLLMSFFSGPSLEPMYH---------------PVATAYRWPLPELAQALETAGFQVTSSHWDPR 184 (203)
T ss_dssp EEEEEEEEECCSSCEEECC---------------SSSCEEECCHHHHHHHHHHTTEEEEEEEECTT
T ss_pred CcEEEEEEccCCchhhhhc---------------hhhhhccCCHHHHHHHHHHCCCcEEEEEecCC
Confidence 9999999865543111100 01111246899999999999999999886655
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-21 Score=171.16 Aligned_cols=155 Identities=22% Similarity=0.291 Sum_probs=130.6
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
..+++.+++.. +.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.+++++...+++ ++.+..+|+.++
T Consensus 27 ~~~~~~~~~~~-----~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~ 100 (219)
T 3dh0_A 27 EKVLKEFGLKE-----GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKI 100 (219)
T ss_dssp HHHHHHHTCCT-----TCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBC
T ss_pred HHHHHHhCCCC-----CCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccC
Confidence 44555555554 8899999999999999999986 469999999999999999999888874 899999999998
Q ss_pred CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (379)
++++++||+|++..+++|++++..+++++.++|||||++++.++......... .....++.+
T Consensus 101 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------------------~~~~~~~~~ 162 (219)
T 3dh0_A 101 PLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGP------------------PPEEVYSEW 162 (219)
T ss_dssp SSCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSC------------------CGGGSCCHH
T ss_pred CCCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCC------------------chhcccCHH
Confidence 88889999999999999999999999999999999999999987654431110 011245899
Q ss_pred HHHHHHHhCCCceeEEEecCC
Q 016981 301 DYVKLLQSLSLEDIKAEDWSQ 321 (379)
Q Consensus 301 ~~~~~l~~aGF~~v~~~~~~~ 321 (379)
++.++|+++||++++...+..
T Consensus 163 ~~~~~l~~~Gf~~~~~~~~~~ 183 (219)
T 3dh0_A 163 EVGLILEDAGIRVGRVVEVGK 183 (219)
T ss_dssp HHHHHHHHTTCEEEEEEEETT
T ss_pred HHHHHHHHCCCEEEEEEeeCC
Confidence 999999999999999876654
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-22 Score=178.81 Aligned_cols=163 Identities=18% Similarity=0.180 Sum_probs=122.6
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.|++++...+ ++.+..+|+.+++++ ++||+|++..++
T Consensus 44 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~-~~fD~v~~~~~l 119 (234)
T 3dtn_A 44 ENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDFE-EKYDMVVSALSI 119 (234)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCCC-SCEEEEEEESCG
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCCC-CCceEEEEeCcc
Confidence 47899999999999999999987 7899999999999999999875432 899999999998876 899999999999
Q ss_pred CCCCCHH--HHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHH----------HHhhccCCCCCCCHHHHHH
Q 016981 237 EHMPDKS--KFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLK----------KICDAYYLPAWCSTADYVK 304 (379)
Q Consensus 237 ~~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 304 (379)
+|+++.. .++++++++|||||++++.++..................... ...........++.+++.+
T Consensus 120 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (234)
T 3dtn_A 120 HHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLN 199 (234)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHH
Confidence 9998765 599999999999999999987654321111100000101100 0001111224568999999
Q ss_pred HHHhCCCceeEEEecCCCcc
Q 016981 305 LLQSLSLEDIKAEDWSQNVA 324 (379)
Q Consensus 305 ~l~~aGF~~v~~~~~~~~~~ 324 (379)
+|+++||+++++.....+..
T Consensus 200 ll~~aGF~~v~~~~~~~~~~ 219 (234)
T 3dtn_A 200 WLKEAGFRDVSCIYKYYQFA 219 (234)
T ss_dssp HHHHTTCEEEEEEEEETTEE
T ss_pred HHHHcCCCceeeeeeeccee
Confidence 99999999998875554443
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-22 Score=179.57 Aligned_cols=149 Identities=16% Similarity=0.191 Sum_probs=115.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++. .++.+..+|+.+++++ ++||+|++..+++|
T Consensus 46 ~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~ 118 (220)
T 3hnr_A 46 FGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVP-TSIDTIVSTYAFHH 118 (220)
T ss_dssp CSEEEEECCTTSHHHHHHHHT-TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCC-SCCSEEEEESCGGG
T ss_pred CCeEEEeCCCCCHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCC-CCeEEEEECcchhc
Confidence 789999999999999999987 7899999999999999998763 4789999999999887 89999999999999
Q ss_pred CCCHHH--HHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHH----HhhccCCCCCCCHHHHHHHHHhCCCc
Q 016981 239 MPDKSK--FVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK----ICDAYYLPAWCSTADYVKLLQSLSLE 312 (379)
Q Consensus 239 ~~~~~~--~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~aGF~ 312 (379)
++++.. +++++.++|||||.+++.+...... ............. .........+.+.+++.++|+++||+
T Consensus 119 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 194 (220)
T 3hnr_A 119 LTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQ----DAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFH 194 (220)
T ss_dssp SCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSH----HHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEE
T ss_pred CChHHHHHHHHHHHHhcCCCCEEEEEeccccCh----HHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCE
Confidence 998876 9999999999999999998543221 1111000000000 00000011245899999999999998
Q ss_pred eeEEEe
Q 016981 313 DIKAED 318 (379)
Q Consensus 313 ~v~~~~ 318 (379)
++....
T Consensus 195 v~~~~~ 200 (220)
T 3hnr_A 195 VTFTRL 200 (220)
T ss_dssp EEEEEC
T ss_pred EEEeec
Confidence 877653
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-22 Score=174.57 Aligned_cols=167 Identities=18% Similarity=0.171 Sum_probs=129.7
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
.....+++.++..+ + +|||+|||+|.++..+++..+.+|+|+|+|+.+++.|++++...++.+++.+.++|+.+
T Consensus 31 ~~~~~~~~~~~~~~-----~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 104 (219)
T 3dlc_A 31 IIAENIINRFGITA-----G-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHN 104 (219)
T ss_dssp HHHHHHHHHHCCCE-----E-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTB
T ss_pred HHHHHHHHhcCCCC-----C-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHH
Confidence 35566666666443 4 99999999999999999875679999999999999999999998887799999999999
Q ss_pred CCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc-----CCC
Q 016981 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY-----YLP 294 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 294 (379)
+++++++||+|++..+++|++++..++++++++|||||.+++.+..... .+.......+......+ ...
T Consensus 105 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (219)
T 3dlc_A 105 IPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNK------ELRDSISAEMIRKNPDWKEFNRKNI 178 (219)
T ss_dssp CSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSH------HHHHHHHHHHHHHCTTHHHHHHHHS
T ss_pred CCCCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcH------HHHHHHHHHHHHhHHHHHhhhhhcc
Confidence 9988899999999999999999999999999999999999998743321 11111111111110000 001
Q ss_pred CCCCHHHHHHHHHhCCCceeEEEe
Q 016981 295 AWCSTADYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 295 ~~~~~~~~~~~l~~aGF~~v~~~~ 318 (379)
..++.+++.++|+++||+++++..
T Consensus 179 ~~~~~~~~~~~l~~aGf~~v~~~~ 202 (219)
T 3dlc_A 179 SQENVERFQNVLDEIGISSYEIIL 202 (219)
T ss_dssp SHHHHHHHHHHHHHHTCSSEEEEE
T ss_pred ccCCHHHHHHHHHHcCCCeEEEEe
Confidence 234789999999999999988763
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.8e-21 Score=174.36 Aligned_cols=185 Identities=14% Similarity=0.176 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC--CEEEEEeCCHH------HHHHHHHHHHHcC
Q 016981 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPV------QAQRANALAAARG 205 (379)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~------~~~~a~~~~~~~~ 205 (379)
...++......+++.+++.+ +.+|||||||+|.++..+++.++ .+|+|+|+|+. +++.|++++...+
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~-----~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~ 98 (275)
T 3bkx_A 24 IQRRQTAHRLAIAEAWQVKP-----GEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP 98 (275)
T ss_dssp HHHHHHHHHHHHHHHHTCCT-----TCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHcCCCC-----CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC
Confidence 55667777888888877665 89999999999999999999863 79999999997 9999999998887
Q ss_pred CCCCeEEEEcc---CCCCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHH
Q 016981 206 LADKVSFQVGD---ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQE 282 (379)
Q Consensus 206 ~~~~i~~~~~d---~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 282 (379)
+.+++.+..+| ...+++++++||+|++..+++|++++..+++.+.++++|||++++.++......+ .........
T Consensus 99 ~~~~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~--~~~~~~~~~ 176 (275)
T 3bkx_A 99 LGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTAL--DQIGHLQAA 176 (275)
T ss_dssp TGGGEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSG--GGHHHHHHH
T ss_pred CCCceEEEECChhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCch--hhhhHHHHH
Confidence 76789999998 4455677889999999999999999988888888888889999999976544321 111111111
Q ss_pred HHHH----Hhh--ccCCCCCCCHHHHHHHHHhCCCceeEEEecCCCccc
Q 016981 283 LLKK----ICD--AYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAP 325 (379)
Q Consensus 283 ~~~~----~~~--~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~ 325 (379)
+... ... ......+++.+++.++|+++||+++++..+..+...
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~~~~~~~ 225 (275)
T 3bkx_A 177 MIQGLLYAIAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIVEDPTLD 225 (275)
T ss_dssp HHHHHHHHHSCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCBCCTTCT
T ss_pred HHHHHHhhccccccccccccCCHHHHHHHHHHCCCeeEEEEEecCCCCC
Confidence 1111 111 111224679999999999999999998877544433
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=174.33 Aligned_cols=149 Identities=21% Similarity=0.310 Sum_probs=121.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++. ...++.+..+|+.++++++++||+|++..+++|
T Consensus 54 ~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 128 (242)
T 3l8d_A 54 EAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW 128 (242)
T ss_dssp TCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCSSCTTCEEEEEEESCTTS
T ss_pred CCeEEEEcCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCCCCCCCccEEEEcChHhh
Confidence 789999999999999999997 789999999999999998864 235899999999999988899999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEe
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 318 (379)
++++..++++++++|||||++++.++....... ...+ ............++++++.++|+++||++++...
T Consensus 129 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 199 (242)
T 3l8d_A 129 TEEPLRALNEIKRVLKSDGYACIAILGPTAKPR-ENSY--------PRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIG 199 (242)
T ss_dssp SSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGG-GGGG--------GGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred ccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhh-hhhh--------hhhccccccccCCCHHHHHHHHHHcCCEEEEeec
Confidence 999999999999999999999999865432111 1101 1111111122457899999999999999999876
Q ss_pred cCC
Q 016981 319 WSQ 321 (379)
Q Consensus 319 ~~~ 321 (379)
+..
T Consensus 200 ~~~ 202 (242)
T 3l8d_A 200 VYK 202 (242)
T ss_dssp EEC
T ss_pred ccc
Confidence 543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.6e-22 Score=179.07 Aligned_cols=163 Identities=21% Similarity=0.211 Sum_probs=126.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
..+.+++.++..+ +.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.++++. ++.|.++|++++
T Consensus 22 ~~~~l~~~~~~~~-----~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~ 88 (261)
T 3ege_A 22 IVNAIINLLNLPK-----GSVIADIGAGTGGYSVALANQ-GLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENL 88 (261)
T ss_dssp HHHHHHHHHCCCT-----TCEEEEETCTTSHHHHHHHTT-TCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSC
T ss_pred HHHHHHHHhCCCC-----CCEEEEEcCcccHHHHHHHhC-CCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhC
Confidence 4455566665544 899999999999999999985 789999999999999876532 799999999999
Q ss_pred CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (379)
++++++||+|++..+++|++++..++++++++|| ||++++.++.......... ............ ..+.+.+
T Consensus 89 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~ 160 (261)
T 3ege_A 89 ALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWL--YDYFPFLWEDAL-----RFLPLDE 160 (261)
T ss_dssp CSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGG--GGTCHHHHHHHH-----TSCCHHH
T ss_pred CCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHH--HHHHHHHhhhhh-----hhCCCHH
Confidence 9888999999999999999999999999999999 9999998875433221110 011111111111 1244788
Q ss_pred HHHHHHHhCCCceeEEEecCCCccc
Q 016981 301 DYVKLLQSLSLEDIKAEDWSQNVAP 325 (379)
Q Consensus 301 ~~~~~l~~aGF~~v~~~~~~~~~~~ 325 (379)
++. +|+++||+++++..+..++..
T Consensus 161 ~~~-~l~~aGF~~v~~~~~~~p~~~ 184 (261)
T 3ege_A 161 QIN-LLQENTKRRVEAIPFLLPHDL 184 (261)
T ss_dssp HHH-HHHHHHCSEEEEEECCEETTC
T ss_pred HHH-HHHHcCCCceeEEEecCCCcC
Confidence 899 999999999999888766654
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=174.61 Aligned_cols=198 Identities=13% Similarity=0.170 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHccCchhHHHhhhccccccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccH
Q 016981 92 ARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGG 171 (379)
Q Consensus 92 ~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~ 171 (379)
....++...+||+.....|+..++.. .. .. ..........+..++..+. ...++.+|||+|||+|.
T Consensus 27 ~~~~~~~~~~~w~~~~~~~~~~~~~~------~~---~~-~~~~~~~~~~~~~l~~~~~----~~~~~~~vLDiGcG~G~ 92 (241)
T 2ex4_A 27 EKQFYSKAKTYWKQIPPTVDGMLGGY------GH---IS-SIDINSSRKFLQRFLREGP----NKTGTSCALDCGAGIGR 92 (241)
T ss_dssp HHHHHHHHHHHHHTSCSSHHHHTTTC------GG---GH-HHHHHHHHHHHHGGGC--------CCCCSEEEEETCTTTH
T ss_pred cchhHHHHHHHHhcCCccccccccCC------CC---cc-hhhHHhHHHHHHHHHHhcc----cCCCCCEEEEECCCCCH
Confidence 44566778888888877777655421 00 00 0011122233333332221 11247899999999999
Q ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCH--HHHHHHH
Q 016981 172 SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSEL 249 (379)
Q Consensus 172 ~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~ 249 (379)
++..+++....+|+|+|+|+.+++.|++++...+ ..++.+..+|+.++++++++||+|++..+++|+++. ..+++++
T Consensus 93 ~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~ 171 (241)
T 2ex4_A 93 ITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRC 171 (241)
T ss_dssp HHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCCCCCCEEEEEEcchhhhCCHHHHHHHHHHH
Confidence 9999988766699999999999999999887653 246899999999888877899999999999999885 4899999
Q ss_pred HHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEecC
Q 016981 250 ARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWS 320 (379)
Q Consensus 250 ~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 320 (379)
.++|||||++++.+..... ...+.. .......+.+++.++|+++||++++.....
T Consensus 172 ~~~LkpgG~l~i~~~~~~~----~~~~~~------------~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 226 (241)
T 2ex4_A 172 KGSLRPNGIIVIKDNMAQE----GVILDD------------VDSSVCRDLDVVRRIICSAGLSLLAEERQE 226 (241)
T ss_dssp HHHEEEEEEEEEEEEEBSS----SEEEET------------TTTEEEEBHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHhcCCCeEEEEEEccCCC----cceecc------------cCCcccCCHHHHHHHHHHcCCeEEEeeecC
Confidence 9999999999998865433 000100 000012379999999999999999887553
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6e-21 Score=167.84 Aligned_cols=189 Identities=20% Similarity=0.241 Sum_probs=133.1
Q ss_pred HHHHHHHHHHccCchhHHHhhhccccccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHH
Q 016981 94 ELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSS 173 (379)
Q Consensus 94 ~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~ 173 (379)
.+.+...++|+.....|+..+.. .....+..+++.+... .++.+|||+|||+|.++
T Consensus 6 ~~~~~~~~~~~~~a~~y~~~~~~--------------------~~~~~~~~~~~~l~~~----~~~~~vLdiG~G~G~~~ 61 (218)
T 3ou2_A 6 GLIESQLSYYRARASEYDATFVP--------------------YMDSAAPAALERLRAG----NIRGDVLELASGTGYWT 61 (218)
T ss_dssp HHHHHHHHHHHHHGGGHHHHHHH--------------------HHTTTHHHHHHHHTTT----TSCSEEEEESCTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh--------------------HHHHHHHHHHHHHhcC----CCCCeEEEECCCCCHHH
Confidence 44556778888777777654322 1111233444444321 13679999999999999
Q ss_pred HHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCH--HHHHHHHHH
Q 016981 174 RYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELAR 251 (379)
Q Consensus 174 ~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r 251 (379)
..+++. +.+|+|+|+|+.+++.+++ .+. .++.+..+|+.++ +++++||+|++..+++|++++ ..+++++.+
T Consensus 62 ~~l~~~-~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~ 134 (218)
T 3ou2_A 62 RHLSGL-ADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRS 134 (218)
T ss_dssp HHHHHH-SSEEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSC-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHhc-CCeEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccC-CCCCceeEEEEechhhcCCHHHHHHHHHHHHH
Confidence 999998 7899999999999999988 333 5899999999888 678999999999999999986 899999999
Q ss_pred hcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHH-hhcc-------CCCCCCCHHHHHHHHHhCCCceeEEEe
Q 016981 252 VTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI-CDAY-------YLPAWCSTADYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 252 ~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~l~~aGF~~v~~~~ 318 (379)
+|||||.+++.++...... +........... .... ....+++++++.++|+++||+++..+.
T Consensus 135 ~L~pgG~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~ 204 (218)
T 3ou2_A 135 AVAPGGVVEFVDVTDHERR-----LEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCSVDEV 204 (218)
T ss_dssp HEEEEEEEEEEEECCCC-----------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred HcCCCeEEEEEeCCCCccc-----cchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEEEeeec
Confidence 9999999999987653211 000000000000 0000 012356999999999999999655443
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-21 Score=183.96 Aligned_cols=154 Identities=19% Similarity=0.214 Sum_probs=122.4
Q ss_pred CCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHc-----C-C-CCCeEEEEccCCCC------C
Q 016981 157 KRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAAR-----G-L-ADKVSFQVGDALQQ------P 221 (379)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~-----~-~-~~~i~~~~~d~~~~------~ 221 (379)
.++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.|+++++.. | . .+++.|.++|+.++ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 358899999999999999999875 569999999999999999987654 3 2 25899999999987 8
Q ss_pred CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHH
Q 016981 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (379)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (379)
+++++||+|+++.+++|++++..++++++++|||||+|++.++......+ ...... ... ........++.++
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~------~~~~~~-~~~-~~~~~~~~~~~~~ 233 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLS------EAAQQD-PIL-YGECLGGALYLED 233 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCC------HHHHHC-HHH-HHTTCTTCCBHHH
T ss_pred CCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccC------HhHhhh-HHH-hhcccccCCCHHH
Confidence 88899999999999999999999999999999999999999865443211 111110 011 1112223568899
Q ss_pred HHHHHHhCCCceeEEEe
Q 016981 302 YVKLLQSLSLEDIKAED 318 (379)
Q Consensus 302 ~~~~l~~aGF~~v~~~~ 318 (379)
+.++|+++||+++++..
T Consensus 234 ~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 234 FRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHCCCceEEEEe
Confidence 99999999999887654
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-21 Score=172.76 Aligned_cols=188 Identities=14% Similarity=0.129 Sum_probs=139.1
Q ss_pred HHHHHHHHHccCchhHHHhhhccccccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHH
Q 016981 95 LKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSR 174 (379)
Q Consensus 95 ~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~ 174 (379)
.++....+|+.....|+...... .............+++.+... ++.+|||+|||+|.++.
T Consensus 49 ~~~~~~~~w~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~l~~~-----~~~~vLDiG~G~G~~~~ 109 (254)
T 1xtp_A 49 WYGKALEYWRTVPATVSGVLGGM--------------DHVHDVDIEGSRNFIASLPGH-----GTSRALDCGAGIGRITK 109 (254)
T ss_dssp HHHHHHHHHHTSCSSHHHHTTTC--------------GGGHHHHHHHHHHHHHTSTTC-----CCSEEEEETCTTTHHHH
T ss_pred hhhhhhhHHhcCCccccceecCc--------------CccCHHHHHHHHHHHHhhccc-----CCCEEEEECCCcCHHHH
Confidence 34456677777666555443221 002333444556667666543 38899999999999999
Q ss_pred HHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC--CHHHHHHHHHHh
Q 016981 175 YLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARV 252 (379)
Q Consensus 175 ~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~r~ 252 (379)
.+++....+|+|+|+|+.+++.|++++... .++.+.++|+.++++++++||+|++..+++|++ ++..++++++++
T Consensus 110 ~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~ 186 (254)
T 1xtp_A 110 NLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQA 186 (254)
T ss_dssp HTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHh
Confidence 999876568999999999999999987543 479999999999888889999999999999995 478999999999
Q ss_pred cCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEec
Q 016981 253 TAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319 (379)
Q Consensus 253 LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 319 (379)
|||||++++.+......... .. ......+++.+++.++|+++||+++++...
T Consensus 187 LkpgG~l~i~~~~~~~~~~~---~~------------~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 238 (254)
T 1xtp_A 187 LTPNGYIFFKENCSTGDRFL---VD------------KEDSSLTRSDIHYKRLFNESGVRVVKEAFQ 238 (254)
T ss_dssp EEEEEEEEEEEEBC--CCEE---EE------------TTTTEEEBCHHHHHHHHHHHTCCEEEEEEC
T ss_pred cCCCeEEEEEecCCCcccce---ec------------ccCCcccCCHHHHHHHHHHCCCEEEEeeec
Confidence 99999999998543221100 00 000111348999999999999999988654
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-21 Score=172.08 Aligned_cols=153 Identities=11% Similarity=0.036 Sum_probs=116.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.. .++.+.++|+.++ +++++||+|++..+++|
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~-----~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~ 115 (250)
T 2p7i_A 43 PGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRLK-----DGITYIHSRFEDA-QLPRRYDNIVLTHVLEH 115 (250)
T ss_dssp SSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHSC-----SCEEEEESCGGGC-CCSSCEEEEEEESCGGG
T ss_pred CCcEEEECCCCCHHHHHHHHh-CCcEEEEeCCHHHHHHHHHhhh-----CCeEEEEccHHHc-CcCCcccEEEEhhHHHh
Confidence 678999999999999999987 5699999999999999998752 2799999999887 46789999999999999
Q ss_pred CCCHHHHHHHHH-HhcCCCCEEEEEeccCCCCCCCc----cccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCce
Q 016981 239 MPDKSKFVSELA-RVTAPAGTIIIVTWCHRDLAPSE----ESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLED 313 (379)
Q Consensus 239 ~~~~~~~l~~~~-r~LkpgG~l~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 313 (379)
++++..++++++ ++|||||++++.+.......... ..+..+. .+... ........+++.+++.++|+++||++
T Consensus 116 ~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~~~Gf~~ 193 (250)
T 2p7i_A 116 IDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNS-AVTEA-EFAHGHRCTYALDTLERDASRAGLQV 193 (250)
T ss_dssp CSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTT-CCCHH-HHHTTCCCCCCHHHHHHHHHHTTCEE
T ss_pred hcCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccch-hcccc-cccccccccCCHHHHHHHHHHCCCeE
Confidence 999999999999 99999999999885433210000 0000000 00000 00111123579999999999999999
Q ss_pred eEEEecC
Q 016981 314 IKAEDWS 320 (379)
Q Consensus 314 v~~~~~~ 320 (379)
+++..+.
T Consensus 194 ~~~~~~~ 200 (250)
T 2p7i_A 194 TYRSGIF 200 (250)
T ss_dssp EEEEEEE
T ss_pred EEEeeeE
Confidence 9987544
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-21 Score=173.57 Aligned_cols=157 Identities=20% Similarity=0.209 Sum_probs=118.2
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++ . +..+++.+..+|+.++++++++||+|++..+++
T Consensus 39 ~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~-~-~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 115 (263)
T 2yqz_A 39 EEPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKI-A-GVDRKVQVVQADARAIPLPDESVHGVIVVHLWH 115 (263)
T ss_dssp SCCEEEEETCTTSTTHHHHHTT-TCEEEEEESCHHHHHHHHHHT-T-TSCTTEEEEESCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCEEEEeCCcCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh-h-ccCCceEEEEcccccCCCCCCCeeEEEECCchh
Confidence 3789999999999999999987 789999999999999999987 2 233689999999999988889999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc-CCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY-YLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
|++++..+++++.++|||||++++. +....... ...+............... ....+++.+++.++|+++||+++..
T Consensus 116 ~~~~~~~~l~~~~~~L~pgG~l~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 193 (263)
T 2yqz_A 116 LVPDWPKVLAEAIRVLKPGGALLEG-WDQAEASP-EWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPRTR 193 (263)
T ss_dssp GCTTHHHHHHHHHHHEEEEEEEEEE-EEEECCCH-HHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred hcCCHHHHHHHHHHHCCCCcEEEEE-ecCCCccH-HHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCcceE
Confidence 9999999999999999999999987 33221000 0001111122222111000 0012457889999999999998776
Q ss_pred Eec
Q 016981 317 EDW 319 (379)
Q Consensus 317 ~~~ 319 (379)
...
T Consensus 194 ~~~ 196 (263)
T 2yqz_A 194 EVA 196 (263)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=175.17 Aligned_cols=161 Identities=20% Similarity=0.242 Sum_probs=125.6
Q ss_pred CCCEEEEeCCcccHHHHHHH-HHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLA-KKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~-~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
++.+|||+|||+|.++..++ ... +.+|+|+|+|+.+++.|++++...++.+++.++++|+.+++++ ++||+|+++.+
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~ 196 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNGL 196 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCSS
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECCh
Confidence 38899999999999999985 333 6799999999999999999998888777799999999999887 99999999999
Q ss_pred cCCCCCHHH---HHHHHHHhcCCCCEEEEEeccCCCCCCCcc-----ccchHHHHHHHHHhh---ccCCCCCCCHHHHHH
Q 016981 236 GEHMPDKSK---FVSELARVTAPAGTIIIVTWCHRDLAPSEE-----SLQPWEQELLKKICD---AYYLPAWCSTADYVK 304 (379)
Q Consensus 236 l~~~~~~~~---~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 304 (379)
++|++++.. ++++++++|||||++++.++.......... ............... ......+++.+++.+
T Consensus 197 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (305)
T 3ocj_A 197 NIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRA 276 (305)
T ss_dssp GGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHH
Confidence 999998865 799999999999999999876543322222 111111111111111 112224579999999
Q ss_pred HHHhCCCceeEEEec
Q 016981 305 LLQSLSLEDIKAEDW 319 (379)
Q Consensus 305 ~l~~aGF~~v~~~~~ 319 (379)
+|+++||+++++...
T Consensus 277 ~l~~aGF~~v~~~~~ 291 (305)
T 3ocj_A 277 QLEEAGFTDLRFEDD 291 (305)
T ss_dssp HHHHTTCEEEEEECC
T ss_pred HHHHCCCEEEEEEcc
Confidence 999999999998753
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-20 Score=173.86 Aligned_cols=155 Identities=19% Similarity=0.213 Sum_probs=120.6
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.|++++...+ .++.+.++|+.++++ +++||+|++..+
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~v~~~~~d~~~~~~-~~~fD~v~~~~~ 98 (284)
T 3gu3_A 22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP--YDSEFLEGDATEIEL-NDKYDIAICHAF 98 (284)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS--SEEEEEESCTTTCCC-SSCEEEEEEESC
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEEcchhhcCc-CCCeeEEEECCh
Confidence 48899999999999999999886 4799999999999999999987654 389999999999887 479999999999
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEecc-----CC-----CCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWC-----HR-----DLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKL 305 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (379)
++|++++..++++++++|||||++++.+.. .. ...+....+.. ....+.......+. .+.+.+++.++
T Consensus 99 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~l~~~ 176 (284)
T 3gu3_A 99 LLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGV-LQKLFESDTQRNGK-DGNIGMKIPIY 176 (284)
T ss_dssp GGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHH-HHHHHHHHHHHTCC-CTTGGGTHHHH
T ss_pred hhcCCCHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHH-HHHHHHHHhhhhcc-cccHHHHHHHH
Confidence 999999999999999999999999998854 10 00000011111 22223322222222 24467789999
Q ss_pred HHhCCCceeEEE
Q 016981 306 LQSLSLEDIKAE 317 (379)
Q Consensus 306 l~~aGF~~v~~~ 317 (379)
|+++||++|++.
T Consensus 177 l~~aGF~~v~~~ 188 (284)
T 3gu3_A 177 LSELGVKNIECR 188 (284)
T ss_dssp HHHTTCEEEEEE
T ss_pred HHHcCCCeEEEE
Confidence 999999999883
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.8e-21 Score=166.65 Aligned_cols=155 Identities=15% Similarity=0.152 Sum_probs=117.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC-----------CCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG-----------LADK 209 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----------~~~~ 209 (379)
.+.+++..+.+.. +.+|||+|||+|..+..++++ |.+|+|+|+|+.|++.|+++..... ...+
T Consensus 10 ~l~~~~~~l~~~~-----~~~vLD~GCG~G~~~~~la~~-g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 83 (203)
T 1pjz_A 10 DLQQYWSSLNVVP-----GARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPG 83 (203)
T ss_dssp HHHHHHHHHCCCT-----TCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSS
T ss_pred HHHHHHHhcccCC-----CCEEEEeCCCCcHhHHHHHHC-CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCc
Confidence 3444455555544 889999999999999999998 7899999999999999998764210 1247
Q ss_pred eEEEEccCCCCCCCC-CcccEEEeccccCCCCC--HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHH
Q 016981 210 VSFQVGDALQQPFPD-GQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK 286 (379)
Q Consensus 210 i~~~~~d~~~~~~~~-~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (379)
+++.++|+.++++++ ++||+|++..+++|++. ...++++++++|||||++++.........
T Consensus 84 v~~~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~---------------- 147 (203)
T 1pjz_A 84 IEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL---------------- 147 (203)
T ss_dssp SEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS----------------
T ss_pred cEEEECccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccc----------------
Confidence 999999999998765 78999999999999864 35789999999999999555553322110
Q ss_pred HhhccCCCCCCCHHHHHHHHHhCCCceeEEEecCC
Q 016981 287 ICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (379)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 321 (379)
....+...+.+++.+++++ ||+++..+....
T Consensus 148 ---~~~~~~~~~~~el~~~~~~-gf~i~~~~~~~~ 178 (203)
T 1pjz_A 148 ---LEGPPFSVPQTWLHRVMSG-NWEVTKVGGQDT 178 (203)
T ss_dssp ---SSSCCCCCCHHHHHHTSCS-SEEEEEEEESSC
T ss_pred ---cCCCCCCCCHHHHHHHhcC-CcEEEEeccccc
Confidence 0011123589999999998 999887775544
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.4e-21 Score=174.63 Aligned_cols=153 Identities=16% Similarity=0.220 Sum_probs=119.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.++++. +++.+..+|+..+++ +++||+|++..+++|
T Consensus 58 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~ 129 (279)
T 3ccf_A 58 GEFILDLGCGTGQLTEKIAQS-GAEVLGTDNAATMIEKARQNY------PHLHFDVADARNFRV-DKPLDAVFSNAMLHW 129 (279)
T ss_dssp TCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCCC-SSCEEEEEEESCGGG
T ss_pred CCEEEEecCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCCc-CCCcCEEEEcchhhh
Confidence 789999999999999999984 789999999999999998864 478999999999887 589999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhh---cc-CCCCCCCHHHHHHHHHhCCCcee
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD---AY-YLPAWCSTADYVKLLQSLSLEDI 314 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~l~~aGF~~v 314 (379)
++++..++++++++|||||++++..+..... ..+.......+..... .. ....+.+.+++.++|+++||+++
T Consensus 130 ~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 205 (279)
T 3ccf_A 130 VKEPEAAIASIHQALKSGGRFVAEFGGKGNI----KYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVT 205 (279)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEECTTTT----HHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTEEEE
T ss_pred CcCHHHHHHHHHHhcCCCcEEEEEecCCcch----HHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcCCEEE
Confidence 9999999999999999999999987643221 1111111111211111 00 01135689999999999999999
Q ss_pred EEEecCCCc
Q 016981 315 KAEDWSQNV 323 (379)
Q Consensus 315 ~~~~~~~~~ 323 (379)
.+..+..++
T Consensus 206 ~~~~~~~~~ 214 (279)
T 3ccf_A 206 YAALFNRPT 214 (279)
T ss_dssp EEEEEECCE
T ss_pred EEEEecccc
Confidence 887665544
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=167.93 Aligned_cols=145 Identities=17% Similarity=0.242 Sum_probs=121.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+...++.+.++|+.+.+ ++++||+|++..+++|
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMASP-ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCBT-TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhhc
Confidence 459999999999999999875 77999999999999999999876544467999999999876 4569999999999999
Q ss_pred CC--CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 239 ~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
++ +...+++++.++|||||++++.++....... ..+..++.+++.++|+++||+++.+
T Consensus 145 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~~Gf~~~~~ 204 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKPDGELITLMYPITDHVG--------------------GPPYKVDVSTFEEVLVPIGFKAVSV 204 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCS--------------------CSSCCCCHHHHHHHHGGGTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCC--------------------CCCccCCHHHHHHHHHHcCCeEEEE
Confidence 98 8899999999999999999998865432211 1112358999999999999999999
Q ss_pred EecCCCccc
Q 016981 317 EDWSQNVAP 325 (379)
Q Consensus 317 ~~~~~~~~~ 325 (379)
+.....+.+
T Consensus 205 ~~~~~~~~~ 213 (235)
T 3lcc_A 205 EENPHAIPT 213 (235)
T ss_dssp EECTTCCTT
T ss_pred EecCCcccc
Confidence 887766654
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-20 Score=166.94 Aligned_cols=141 Identities=18% Similarity=0.203 Sum_probs=114.5
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC--CCCCCcccEEEeccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMES 235 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~~~~ 235 (379)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++ +.+..+|+.+. ++++++||+|++..+
T Consensus 41 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~~~~fD~i~~~~~ 110 (240)
T 3dli_A 41 GCRRVLDIGCGRGEFLELCKEE-GIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLPDKYLDGVMISHF 110 (240)
T ss_dssp TCSCEEEETCTTTHHHHHHHHH-TCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSCTTCBSEEEEESC
T ss_pred CCCeEEEEeCCCCHHHHHHHhC-CCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcCCCCeeEEEECCc
Confidence 3789999999999999999987 78999999999999998863 78889998775 788899999999999
Q ss_pred cCCCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCce
Q 016981 236 GEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLED 313 (379)
Q Consensus 236 l~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 313 (379)
++|++++ ..++++++++|||||++++..+.... + ..... .........+++.+++.++|+++||++
T Consensus 111 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-------~----~~~~~-~~~~~~~~~~~~~~~l~~~l~~aGf~~ 178 (240)
T 3dli_A 111 VEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTS-------L----YSLIN-FYIDPTHKKPVHPETLKFILEYLGFRD 178 (240)
T ss_dssp GGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTS-------H----HHHHH-HTTSTTCCSCCCHHHHHHHHHHHTCEE
T ss_pred hhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcch-------h----HHHHH-HhcCccccccCCHHHHHHHHHHCCCeE
Confidence 9999854 99999999999999999998865322 1 11111 111111124568999999999999999
Q ss_pred eEEEecC
Q 016981 314 IKAEDWS 320 (379)
Q Consensus 314 v~~~~~~ 320 (379)
+++..+.
T Consensus 179 ~~~~~~~ 185 (240)
T 3dli_A 179 VKIEFFE 185 (240)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 9988775
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-20 Score=165.69 Aligned_cols=159 Identities=22% Similarity=0.305 Sum_probs=123.3
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEEccCCCCCCCCCcccEEEec
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL----ADKVSFQVGDALQQPFPDGQFDLVWSM 233 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~fD~V~~~ 233 (379)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....++ ..++.+..+|+..+++++++||+|++.
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 108 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ 108 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence 3789999999999999999998 78999999999999999998876654 236899999999998888999999999
Q ss_pred cccCCCCCHH---HHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhh--cc-----------CCCCCC
Q 016981 234 ESGEHMPDKS---KFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD--AY-----------YLPAWC 297 (379)
Q Consensus 234 ~~l~~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----------~~~~~~ 297 (379)
.+++|++++. .+++++.++|||||++++.++......+ .+.......+..... .+ ....++
T Consensus 109 ~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (235)
T 3sm3_A 109 AFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLK---LYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHF 185 (235)
T ss_dssp SCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSH---HHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECB
T ss_pred chhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHH---HHHHHhhhhccchhhhcceEecccccCCcceeeEeC
Confidence 9999999987 8999999999999999999876532211 111111011100000 00 001256
Q ss_pred CHHHHHHHHHhCCCceeEEEecC
Q 016981 298 STADYVKLLQSLSLEDIKAEDWS 320 (379)
Q Consensus 298 ~~~~~~~~l~~aGF~~v~~~~~~ 320 (379)
+.+++.++|+++||+++++....
T Consensus 186 ~~~~l~~ll~~aGf~~~~~~~~~ 208 (235)
T 3sm3_A 186 TEKELVFLLTDCRFEIDYFRVKE 208 (235)
T ss_dssp CHHHHHHHHHTTTEEEEEEEEEE
T ss_pred CHHHHHHHHHHcCCEEEEEEecc
Confidence 89999999999999999887543
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.84 E-value=4e-20 Score=166.74 Aligned_cols=159 Identities=15% Similarity=0.147 Sum_probs=117.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++.. ..++.+..+|+.++++++++||+|++..+++
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 119 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAIEPDAYNVVLSSLALH 119 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCCCCTTCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCCCCCCCeEEEEEchhhh
Confidence 388999999999999999998843399999999999999998764 3589999999999998889999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCC----------ccccchHHHHHHHH-Hhh-c----cCCCCCCCHHH
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPS----------EESLQPWEQELLKK-ICD-A----YYLPAWCSTAD 301 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~----------~~~~~~~~~~~~~~-~~~-~----~~~~~~~~~~~ 301 (379)
|++++..++++++++|||||++++........... ......+. .++.. ... . .......+.++
T Consensus 120 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~ 198 (253)
T 3g5l_A 120 YIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVD-RYFNESMRTSHFLGEDVQKYHRTVTT 198 (253)
T ss_dssp GCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEEC-CTTCCCEEEEEETTEEEEEECCCHHH
T ss_pred hhhhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEec-cccccceEEEeeccccCccEecCHHH
Confidence 99999999999999999999999975321100000 00000000 00000 000 0 00001238999
Q ss_pred HHHHHHhCCCceeEEEecCC
Q 016981 302 YVKLLQSLSLEDIKAEDWSQ 321 (379)
Q Consensus 302 ~~~~l~~aGF~~v~~~~~~~ 321 (379)
+.++|+++||+++++.+...
T Consensus 199 ~~~~l~~aGF~~~~~~e~~~ 218 (253)
T 3g5l_A 199 YIQTLLKNGFQINSVIEPEP 218 (253)
T ss_dssp HHHHHHHTTEEEEEEECCCC
T ss_pred HHHHHHHcCCeeeeeecCCC
Confidence 99999999999999876543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-20 Score=162.34 Aligned_cols=137 Identities=15% Similarity=0.168 Sum_probs=113.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++ ++.+..+|+..++ ++++||+|++..+++|
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 114 (211)
T 3e23_A 44 GAKILELGCGAGYQAEAMLAA-GFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD-AIDAYDAVWAHACLLH 114 (211)
T ss_dssp TCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC-CCSCEEEEEECSCGGG
T ss_pred CCcEEEECCCCCHHHHHHHHc-CCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC-CCCcEEEEEecCchhh
Confidence 789999999999999999987 789999999999999999886 4677889998888 6789999999999999
Q ss_pred CC--CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCC-CceeE
Q 016981 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLS-LEDIK 315 (379)
Q Consensus 239 ~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-F~~v~ 315 (379)
++ +...++++++++|||||++++......... .... . ....+++.+++.++|+++| |++++
T Consensus 115 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~~-----------~---~~~~~~~~~~~~~~l~~aG~f~~~~ 178 (211)
T 3e23_A 115 VPRDELADVLKLIWRALKPGGLFYASYKSGEGEG--RDKL-----------A---RYYNYPSEEWLRARYAEAGTWASVA 178 (211)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCE--ECTT-----------S---CEECCCCHHHHHHHHHHHCCCSEEE
T ss_pred cCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCccc--cccc-----------c---hhccCCCHHHHHHHHHhCCCcEEEE
Confidence 98 778999999999999999999875433210 0000 0 0113568999999999999 99998
Q ss_pred EEecC
Q 016981 316 AEDWS 320 (379)
Q Consensus 316 ~~~~~ 320 (379)
+....
T Consensus 179 ~~~~~ 183 (211)
T 3e23_A 179 VESSE 183 (211)
T ss_dssp EEEEE
T ss_pred EEecc
Confidence 87543
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.9e-20 Score=168.93 Aligned_cols=164 Identities=17% Similarity=0.176 Sum_probs=119.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC-CCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...+...++.+.++|+.+.++ ++++||+|++..+++
T Consensus 65 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 144 (298)
T 1ri5_A 65 GDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFH 144 (298)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGG
T ss_pred CCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchhh
Confidence 7899999999999999988874449999999999999999999887766689999999999887 578999999999997
Q ss_pred C----CCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCC----------Ccc-------ccchHHHHHHH-HHhhcc--CC
Q 016981 238 H----MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAP----------SEE-------SLQPWEQELLK-KICDAY--YL 293 (379)
Q Consensus 238 ~----~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~----------~~~-------~~~~~~~~~~~-~~~~~~--~~ 293 (379)
| ..+...+++++.++|||||++++.......... ... .+.......+. ...... ..
T Consensus 145 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 224 (298)
T 1ri5_A 145 YAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCI 224 (298)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSSEE
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhcCCc
Confidence 6 456689999999999999999998743210000 000 00000000000 000000 00
Q ss_pred CCCCCHHHHHHHHHhCCCceeEEEecCCC
Q 016981 294 PAWCSTADYVKLLQSLSLEDIKAEDWSQN 322 (379)
Q Consensus 294 ~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 322 (379)
..+++++++.++|+++||++++...+...
T Consensus 225 ~~~~~~~~l~~ll~~aGf~~v~~~~~~~~ 253 (298)
T 1ri5_A 225 EYFVDFTRMVDGFKRLGLSLVERKGFIDF 253 (298)
T ss_dssp EECCCHHHHHHHHHTTTEEEEEEEEHHHH
T ss_pred ccccCHHHHHHHHHHcCCEEEEecCHHHH
Confidence 13568999999999999999988765443
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-20 Score=167.98 Aligned_cols=100 Identities=24% Similarity=0.365 Sum_probs=90.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||||||+|.++..|++. +.+|+|+|+|+.|++.|++ .+++.+.++|++++++++++||+|++..++||
T Consensus 40 ~~~vLDvGcGtG~~~~~l~~~-~~~v~gvD~s~~ml~~a~~-------~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~ 111 (257)
T 4hg2_A 40 RGDALDCGCGSGQASLGLAEF-FERVHAVDPGEAQIRQALR-------HPRVTYAVAPAEDTGLPPASVDVAIAAQAMHW 111 (257)
T ss_dssp SSEEEEESCTTTTTHHHHHTT-CSEEEEEESCHHHHHTCCC-------CTTEEEEECCTTCCCCCSSCEEEEEECSCCTT
T ss_pred CCCEEEEcCCCCHHHHHHHHh-CCEEEEEeCcHHhhhhhhh-------cCCceeehhhhhhhcccCCcccEEEEeeehhH
Confidence 579999999999999999987 6799999999999988764 25899999999999999999999999999977
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEeccCC
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 267 (379)
+ ++.+++++++|+|||||+|++..+...
T Consensus 112 ~-~~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 112 F-DLDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp C-CHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred h-hHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 6 688999999999999999999886543
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=167.41 Aligned_cols=160 Identities=21% Similarity=0.272 Sum_probs=121.5
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEccCCCCCCCC------Cccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAAR-GLADKVSFQVGDALQQPFPD------GQFD 228 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~~------~~fD 228 (379)
++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.|+++++.. +...++.+.++|++++++++ ++||
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 115 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKID 115 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCee
Confidence 38899999999999999999754 789999999999999999999886 44579999999999988776 8999
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCC--CCHHHHHHHH
Q 016981 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW--CSTADYVKLL 306 (379)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l 306 (379)
+|++..+++|+ ++..+++++.++|||||.|++.++..+.... ...+......+.... ....+.+ ...+.+.+++
T Consensus 116 ~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~w~~p~~~~~~~~l 191 (299)
T 3g5t_A 116 MITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYADPIFPD-YPEFDDLMIEVPYGK--QGLGPYWEQPGRSRLRNML 191 (299)
T ss_dssp EEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEEEECTT-CGGGTTHHHHHHHCT--TTTGGGSCTTHHHHHHTTT
T ss_pred EEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecCCccccC-cHHHHHHHHHhccCc--ccccchhhchhhHHHHHhh
Confidence 99999999999 9999999999999999999996654322111 112222222222110 0111112 2566779999
Q ss_pred HhCCC-----ceeEEEecCC
Q 016981 307 QSLSL-----EDIKAEDWSQ 321 (379)
Q Consensus 307 ~~aGF-----~~v~~~~~~~ 321 (379)
+++|| ++++...+..
T Consensus 192 ~~~gfp~~~f~~v~~~~~~~ 211 (299)
T 3g5t_A 192 KDSHLDPELFHDIQVSYFCA 211 (299)
T ss_dssp TTCCCCTTTEEEEEEEEECG
T ss_pred hccCCChHHcCcceEEEecc
Confidence 99999 6777666644
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.7e-21 Score=167.37 Aligned_cols=153 Identities=20% Similarity=0.285 Sum_probs=112.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC---CCCC-CcccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFPD-GQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~-~~fD~V~~~~ 234 (379)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++ .++.+...|+.++ ++.. ++||+|++..
T Consensus 53 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~ 124 (227)
T 3e8s_A 53 PERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVPVGKDYDLICANF 124 (227)
T ss_dssp CSEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSCCCCCEEEEEEES
T ss_pred CCEEEEeCCCCCHHHHHHHHC-CCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccccccCCCccEEEECc
Confidence 789999999999999999987 78999999999999999886 3577888887766 4444 4599999999
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhc--cCCCCCCCHHHHHHHHHhCCCc
Q 016981 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA--YYLPAWCSTADYVKLLQSLSLE 312 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aGF~ 312 (379)
+++ ..++..++++++++|||||++++.++........ .....+....+...... .....+++.+++.++|+++||+
T Consensus 125 ~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 202 (227)
T 3e8s_A 125 ALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADG-DYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLR 202 (227)
T ss_dssp CCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTT-CCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEE
T ss_pred hhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCcc-ccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCe
Confidence 999 7899999999999999999999998654432211 00000000000000000 0001245899999999999999
Q ss_pred eeEEEecCC
Q 016981 313 DIKAEDWSQ 321 (379)
Q Consensus 313 ~v~~~~~~~ 321 (379)
++++.....
T Consensus 203 ~~~~~~~~~ 211 (227)
T 3e8s_A 203 LVSLQEPQH 211 (227)
T ss_dssp EEEEECCCC
T ss_pred EEEEecCCC
Confidence 999876443
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.82 E-value=7.4e-20 Score=161.12 Aligned_cols=148 Identities=16% Similarity=0.136 Sum_probs=111.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCC----CeEEEEccCCCCCCCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLAD----KVSFQVGDALQQPFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~----~i~~~~~d~~~~~~~~~~fD~V~~~ 233 (379)
+.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|++++...+++. ++.+..+|+...+.++++||+|++.
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 109 (217)
T 3jwh_A 30 ARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVI 109 (217)
T ss_dssp CCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEeeH
Confidence 7899999999999999999875 3699999999999999999987776643 8999999998777777899999999
Q ss_pred cccCCCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHH----HHHH
Q 016981 234 ESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYV----KLLQ 307 (379)
Q Consensus 234 ~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~ 307 (379)
.+++|++++ ..+++++.++|||||.+++....... ..+. ...............++++++. ++++
T Consensus 110 ~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (217)
T 3jwh_A 110 EVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYN-----VKFA----NLPAGKLRHKDHRFEWTRSQFQNWANKITE 180 (217)
T ss_dssp SCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHH-----HHTC---------------CCSCBCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccc-----hhhc----ccccccccccccccccCHHHHHHHHHHHHH
Confidence 999999866 89999999999999977766531000 0000 0000000000111235899998 8999
Q ss_pred hCCCceeE
Q 016981 308 SLSLEDIK 315 (379)
Q Consensus 308 ~aGF~~v~ 315 (379)
++||+++.
T Consensus 181 ~~Gf~v~~ 188 (217)
T 3jwh_A 181 RFAYNVQF 188 (217)
T ss_dssp HSSEEEEE
T ss_pred HcCceEEE
Confidence 99998654
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-18 Score=165.43 Aligned_cols=163 Identities=20% Similarity=0.253 Sum_probs=128.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
....+++.++... ..+|||+|||+|.++..+++.+ +.+++++|+ +.+++.|++++...++.++++|..+|+.
T Consensus 190 ~~~~l~~~~~~~~-----~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~- 262 (369)
T 3gwz_A 190 EAGQVAAAYDFSG-----AATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF- 262 (369)
T ss_dssp HHHHHHHHSCCTT-----CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-
T ss_pred hHHHHHHhCCCcc-----CcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-
Confidence 3456666665544 7899999999999999999987 679999999 9999999999998888789999999998
Q ss_pred CCCCCCcccEEEeccccCCCCCHH--HHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016981 220 QPFPDGQFDLVWSMESGEHMPDKS--KFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (379)
.+++. .||+|++..+++++++.. ++|++++++|||||++++.+...+...... .....+....... ...+
T Consensus 263 ~~~p~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~d~~~~~~~~---g~~~ 334 (369)
T 3gwz_A 263 ETIPD-GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAAS----TLFVDLLLLVLVG---GAER 334 (369)
T ss_dssp TCCCS-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHH----HHHHHHHHHHHHS---CCCB
T ss_pred CCCCC-CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc----hhHhhHHHHhhcC---CccC
Confidence 55555 899999999999998875 799999999999999999997655432111 1111111111111 1245
Q ss_pred CHHHHHHHHHhCCCceeEEEe
Q 016981 298 STADYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 298 ~~~~~~~~l~~aGF~~v~~~~ 318 (379)
+.++|.++|+++||+++++..
T Consensus 335 t~~e~~~ll~~aGf~~~~~~~ 355 (369)
T 3gwz_A 335 SESEFAALLEKSGLRVERSLP 355 (369)
T ss_dssp CHHHHHHHHHTTTEEEEEEEE
T ss_pred CHHHHHHHHHHCCCeEEEEEE
Confidence 899999999999999999865
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=163.16 Aligned_cols=157 Identities=19% Similarity=0.190 Sum_probs=119.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
....+++.+...+ +.+|||+|||+|.++..+++.+ +.+|+|+|+|+.|++.++++. +++.+..+|+.+
T Consensus 21 ~~~~l~~~~~~~~-----~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~ 89 (259)
T 2p35_A 21 PARDLLAQVPLER-----VLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL------PNTNFGKADLAT 89 (259)
T ss_dssp HHHHHHTTCCCSC-----CSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS------TTSEEEECCTTT
T ss_pred HHHHHHHhcCCCC-----CCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------CCcEEEECChhh
Confidence 3445566555443 7899999999999999999987 679999999999999999872 579999999998
Q ss_pred CCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHH--Hhhc-----cC
Q 016981 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK--ICDA-----YY 292 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~ 292 (379)
++ ++++||+|++..+++|++++..++++++++|||||++++..+.... ............. .... ..
T Consensus 90 ~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (259)
T 2p35_A 90 WK-PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQ-----EPTHIAMHETADGGPWKDAFSGGGLR 163 (259)
T ss_dssp CC-CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTT-----SHHHHHHHHHHHHSTTGGGC------
T ss_pred cC-ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCC-----cHHHHHHHHHhcCcchHHHhcccccc
Confidence 88 6789999999999999999999999999999999999998853221 0111111111111 0000 01
Q ss_pred CCCCCCHHHHHHHHHhCCCcee
Q 016981 293 LPAWCSTADYVKLLQSLSLEDI 314 (379)
Q Consensus 293 ~~~~~~~~~~~~~l~~aGF~~v 314 (379)
...+.+.+++.++|+++||++.
T Consensus 164 ~~~~~~~~~~~~~l~~aGf~v~ 185 (259)
T 2p35_A 164 RKPLPPPSDYFNALSPKSSRVD 185 (259)
T ss_dssp -CCCCCHHHHHHHHGGGEEEEE
T ss_pred ccCCCCHHHHHHHHHhcCCceE
Confidence 1246799999999999999743
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=164.79 Aligned_cols=159 Identities=14% Similarity=0.153 Sum_probs=124.5
Q ss_pred hHHHHHHHHHHHHccCchhHHHhhhccccccccCCCCCCC--cchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCc
Q 016981 91 AARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVS--VSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCG 168 (379)
Q Consensus 91 ~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcG 168 (379)
...++...+..+|+.....|+..|+++++.+ +. .+.. .-.+......++..-+..+++.+ +.+|||||||
T Consensus 61 ~~~~l~~~~~~~y~~~~~~~E~~wa~~l~~~--~~-p~~~l~~fpy~~~~~~l~~~E~~la~l~~-----g~rVLDIGcG 132 (298)
T 3fpf_A 61 EMNHALSLIRKFYVNLGMKLEMEKAQEVIES--DS-PWETLRSFYFYPRYLELLKNEAALGRFRR-----GERAVFIGGG 132 (298)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--SS-HHHHHHTSTTHHHHHHHHHHHHHHTTCCT-----TCEEEEECCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CC-hHHhhccCCCcccHHHHHHHHHHHcCCCC-----cCEEEEECCC
Confidence 4678889999999999999999999877544 10 0000 00011223444545455666655 9999999999
Q ss_pred ccHHH-HHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCHHHHHH
Q 016981 169 IGGSS-RYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVS 247 (379)
Q Consensus 169 tG~~~-~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~ 247 (379)
+|.++ ..+++..+++|+|+|+|+.|++.|+++++..|+ .+++|.++|+.+++ +++||+|++... .+++.++++
T Consensus 133 ~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~--d~~FDvV~~~a~---~~d~~~~l~ 206 (298)
T 3fpf_A 133 PLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID--GLEFDVLMVAAL---AEPKRRVFR 206 (298)
T ss_dssp SSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG--GCCCSEEEECTT---CSCHHHHHH
T ss_pred ccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC--CCCcCEEEECCC---ccCHHHHHH
Confidence 98765 445554488999999999999999999999888 79999999998875 689999997654 578899999
Q ss_pred HHHHhcCCCCEEEEEe
Q 016981 248 ELARVTAPAGTIIIVT 263 (379)
Q Consensus 248 ~~~r~LkpgG~l~i~~ 263 (379)
++.++|||||+|++.+
T Consensus 207 el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 207 NIHRYVDTETRIIYRT 222 (298)
T ss_dssp HHHHHCCTTCEEEEEE
T ss_pred HHHHHcCCCcEEEEEc
Confidence 9999999999999976
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.7e-20 Score=154.99 Aligned_cols=132 Identities=23% Similarity=0.328 Sum_probs=112.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.++++ .+++.+..+| .++++++||+|++..+++|
T Consensus 18 ~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~------~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~ 87 (170)
T 3i9f_A 18 KGVIVDYGCGNGFYCKYLLEFA-TKLYCIDINVIALKEVKEK------FDSVITLSDP---KEIPDNSVDFILFANSFHD 87 (170)
T ss_dssp CEEEEEETCTTCTTHHHHHTTE-EEEEEECSCHHHHHHHHHH------CTTSEEESSG---GGSCTTCEEEEEEESCSTT
T ss_pred CCeEEEECCCCCHHHHHHHhhc-CeEEEEeCCHHHHHHHHHh------CCCcEEEeCC---CCCCCCceEEEEEccchhc
Confidence 7899999999999999999985 4999999999999999987 2589999998 6677889999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEe
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 318 (379)
++++..+++++.++|||||++++.++.......... ....++.+++.++|+ ||++++...
T Consensus 88 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~--Gf~~~~~~~ 147 (170)
T 3i9f_A 88 MDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPP------------------LSIRMDEKDYMGWFS--NFVVEKRFN 147 (170)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSC------------------GGGCCCHHHHHHHTT--TEEEEEEEC
T ss_pred ccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCch------------------HhhhcCHHHHHHHHh--CcEEEEccC
Confidence 999999999999999999999999876544221110 012358999999999 999998876
Q ss_pred cC
Q 016981 319 WS 320 (379)
Q Consensus 319 ~~ 320 (379)
+.
T Consensus 148 ~~ 149 (170)
T 3i9f_A 148 PT 149 (170)
T ss_dssp SS
T ss_pred CC
Confidence 65
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-19 Score=166.66 Aligned_cols=151 Identities=19% Similarity=0.128 Sum_probs=120.9
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
+..+|||+|||+|.++..+++.+ +.+++++|+ +.+++.|++++...++.++++|..+|+. .+++. +||+|++.+++
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~vl 245 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAVL 245 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESCG
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehhh
Confidence 36899999999999999999987 679999999 9999999999998888789999999997 45554 89999999999
Q ss_pred CCCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcee
Q 016981 237 EHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (379)
Q Consensus 237 ~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 314 (379)
+|+++. .++|++++++|||||++++.+...+.. . . .... .+....... ...++.++|.++|+++||+++
T Consensus 246 h~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~--~--~-~~~~-d~~~~~~~~---~~~~t~~e~~~ll~~aGf~~~ 316 (332)
T 3i53_A 246 HDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE--H--A-GTGM-DLRMLTYFG---GKERSLAELGELAAQAGLAVR 316 (332)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-------C-CHHH-HHHHHHHHS---CCCCCHHHHHHHHHHTTEEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC--C--c-cHHH-HHHHHhhCC---CCCCCHHHHHHHHHHCCCEEE
Confidence 999886 899999999999999999999765543 1 1 1111 111111111 124589999999999999999
Q ss_pred EEEecC
Q 016981 315 KAEDWS 320 (379)
Q Consensus 315 ~~~~~~ 320 (379)
++....
T Consensus 317 ~~~~~~ 322 (332)
T 3i53_A 317 AAHPIS 322 (332)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 887553
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-19 Score=163.65 Aligned_cols=148 Identities=15% Similarity=0.193 Sum_probs=108.3
Q ss_pred CCCEEEEeCCcccHHHHHH----HHHc-CCE--EEEEeCCHHHHHHHHHHHHHc-CCCCCeEEE--EccCCCCC------
Q 016981 158 RPKNVVDVGCGIGGSSRYL----AKKF-GAK--CQGITLSPVQAQRANALAAAR-GLADKVSFQ--VGDALQQP------ 221 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l----~~~~-~~~--v~gvD~s~~~~~~a~~~~~~~-~~~~~i~~~--~~d~~~~~------ 221 (379)
++.+|||||||+|.++..+ +.++ +.. ++|+|+|+.|++.|++++... ++ .++.+. .+++++++
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNL-ENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSC-TTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCC-CcceEEEEecchhhhhhhhccc
Confidence 4789999999999866543 3333 454 499999999999999998754 33 455554 45554432
Q ss_pred CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccC---CCCCCC
Q 016981 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYY---LPAWCS 298 (379)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 298 (379)
+++++||+|++..+++|++|+.++|++++++|||||++++....... . ...++........ ...+++
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~ 200 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSS---------G-WDKLWKKYGSRFPQDDLCQYIT 200 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTS---------H-HHHHHHHHGGGSCCCTTCCCCC
T ss_pred cCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCc---------c-HHHHHHHHHHhccCCCcccCCC
Confidence 56789999999999999999999999999999999999998654211 1 1122222222111 124678
Q ss_pred HHHHHHHHHhCCCceeEE
Q 016981 299 TADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 299 ~~~~~~~l~~aGF~~v~~ 316 (379)
++++.++|+++||+++..
T Consensus 201 ~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 201 SDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp HHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHCCCceEEE
Confidence 999999999999998764
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-19 Score=158.14 Aligned_cols=138 Identities=21% Similarity=0.219 Sum_probs=111.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++..++.. +|+|+|+.+++.++++ ++.+..+|+.++++++++||+|++..+++|
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 114 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTICF 114 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc--------CCEEEEcccccCCCCCCCeeEEEEcchHhh
Confidence 679999999999999887653 9999999999999875 588999999998888889999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhc---cCCCCCCCHHHHHHHHHhCCCceeE
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA---YYLPAWCSTADYVKLLQSLSLEDIK 315 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~aGF~~v~ 315 (379)
++++..+++++.++|||||.+++.+..... . ........... .....+++.+++.++|+++||++++
T Consensus 115 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~ 184 (219)
T 1vlm_A 115 VDDPERALKEAYRILKKGGYLIVGIVDRES---------F-LGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK 184 (219)
T ss_dssp SSCHHHHHHHHHHHEEEEEEEEEEEECSSS---------H-HHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred ccCHHHHHHHHHHHcCCCcEEEEEEeCCcc---------H-HHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEE
Confidence 999999999999999999999998864321 1 11112111111 1112457999999999999999988
Q ss_pred EEec
Q 016981 316 AEDW 319 (379)
Q Consensus 316 ~~~~ 319 (379)
+...
T Consensus 185 ~~~~ 188 (219)
T 1vlm_A 185 VVQT 188 (219)
T ss_dssp EEEE
T ss_pred Eecc
Confidence 7654
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.9e-19 Score=167.46 Aligned_cols=167 Identities=22% Similarity=0.268 Sum_probs=130.4
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
.....+++.++... +.+|||||||+|.++..+++.+ +.+++++|+ +.+++.|++++...++++++++..+|+.
T Consensus 177 ~~~~~l~~~~~~~~-----~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 250 (359)
T 1x19_A 177 FAIQLLLEEAKLDG-----VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIY 250 (359)
T ss_dssp HHHHHHHHHCCCTT-----CCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred hhHHHHHHhcCCCC-----CCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccc
Confidence 34456666666544 7899999999999999999987 679999999 9999999999998888778999999998
Q ss_pred CCCCCCCcccEEEeccccCCCCC--HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHh--h-ccCC
Q 016981 219 QQPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC--D-AYYL 293 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~ 293 (379)
+.++++ +|+|++..+++|+++ ...++++++++|||||++++.++..+.. . ...+ ...+.... . ....
T Consensus 251 ~~~~~~--~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~-~~~~----~~~~~~~~~~~~g~~~ 322 (359)
T 1x19_A 251 KESYPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDP-E-NPNF----DYLSHYILGAGMPFSV 322 (359)
T ss_dssp TSCCCC--CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCT-T-SCCH----HHHHHHGGGGGSSCCC
T ss_pred cCCCCC--CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCC-C-CchH----HHHHHHHHhcCCCCcc
Confidence 877654 399999999999987 6889999999999999999999765543 1 1111 11111111 1 1111
Q ss_pred CCCCCHHHHHHHHHhCCCceeEEEecC
Q 016981 294 PAWCSTADYVKLLQSLSLEDIKAEDWS 320 (379)
Q Consensus 294 ~~~~~~~~~~~~l~~aGF~~v~~~~~~ 320 (379)
..+++.++|.++|+++||+++++..+.
T Consensus 323 ~~~~t~~e~~~ll~~aGf~~v~~~~~~ 349 (359)
T 1x19_A 323 LGFKEQARYKEILESLGYKDVTMVRKY 349 (359)
T ss_dssp CCCCCGGGHHHHHHHHTCEEEEEEEET
T ss_pred cCCCCHHHHHHHHHHCCCceEEEEecC
Confidence 234799999999999999999887654
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-20 Score=181.12 Aligned_cols=163 Identities=16% Similarity=0.213 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCe-EE
Q 016981 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKV-SF 212 (379)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i-~~ 212 (379)
+........+.+++.+++.+ +.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++ +.+... .+
T Consensus 88 ~~~~~~~~~~~l~~~~~~~~-----~~~VLDiGcG~G~~~~~l~~~-g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~ 157 (416)
T 4e2x_A 88 MREHFAMLARDFLATELTGP-----DPFIVEIGCNDGIMLRTIQEA-GVRHLGFEPSSGVAAKAREK----GIRVRTDFF 157 (416)
T ss_dssp HHHHHHHHHHHHHHTTTCSS-----SCEEEEETCTTTTTHHHHHHT-TCEEEEECCCHHHHHHHHTT----TCCEECSCC
T ss_pred HHHHHHHHHHHHHHHhCCCC-----CCEEEEecCCCCHHHHHHHHc-CCcEEEECCCHHHHHHHHHc----CCCcceeee
Confidence 34455667777777776554 889999999999999999987 77999999999999999875 222111 12
Q ss_pred EEccCCCCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHH-Hhhcc
Q 016981 213 QVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK-ICDAY 291 (379)
Q Consensus 213 ~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 291 (379)
...+...+++++++||+|++.++++|++++..++++++++|||||++++...... ..... .....
T Consensus 158 ~~~~~~~l~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~--------------~~~~~~~~~~~ 223 (416)
T 4e2x_A 158 EKATADDVRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLG--------------DIVAKTSFDQI 223 (416)
T ss_dssp SHHHHHHHHHHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHH--------------HHHHHTCGGGC
T ss_pred chhhHhhcccCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChH--------------Hhhhhcchhhh
Confidence 2334444566678999999999999999999999999999999999999764311 11111 01111
Q ss_pred C--CCCCCCHHHHHHHHHhCCCceeEEEecC
Q 016981 292 Y--LPAWCSTADYVKLLQSLSLEDIKAEDWS 320 (379)
Q Consensus 292 ~--~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 320 (379)
+ ...+++.+++.++++++||++++++.+.
T Consensus 224 ~~~~~~~~s~~~l~~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 224 FDEHFFLFSATSVQGMAQRCGFELVDVQRLP 254 (416)
T ss_dssp STTCCEECCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred hhhhhhcCCHHHHHHHHHHcCCEEEEEEEcc
Confidence 1 1135699999999999999999988764
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=160.28 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=112.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCC----CeEEEEccCCCCCCCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLAD----KVSFQVGDALQQPFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~----~i~~~~~d~~~~~~~~~~fD~V~~~ 233 (379)
+.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|++++...+++. ++.+..+|+...++++++||+|++.
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 109 (219)
T 3jwg_A 30 AKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVI 109 (219)
T ss_dssp CCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEEH
Confidence 7899999999999999999875 3799999999999999999987766543 8999999998888778899999999
Q ss_pred cccCCCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHH----HHHH
Q 016981 234 ESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYV----KLLQ 307 (379)
Q Consensus 234 ~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~ 307 (379)
.+++|++++ ..+++++.++|||||.++......... .+........ ........++.+++. ++++
T Consensus 110 ~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~-----~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~l~~ 180 (219)
T 3jwg_A 110 EVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNF-----HYGNLFEGNL----RHRDHRFEWTRKEFQTWAVKVAE 180 (219)
T ss_dssp SCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGG-----CCCCT---------GGGCCTTSBCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhh-----hhcccCcccc----cccCceeeecHHHHHHHHHHHHH
Confidence 999999866 799999999999999666554321110 0000000000 001111245888998 8899
Q ss_pred hCCCceeEE
Q 016981 308 SLSLEDIKA 316 (379)
Q Consensus 308 ~aGF~~v~~ 316 (379)
++||++...
T Consensus 181 ~~Gf~v~~~ 189 (219)
T 3jwg_A 181 KYGYSVRFL 189 (219)
T ss_dssp HHTEEEEEE
T ss_pred HCCcEEEEE
Confidence 999976543
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=163.31 Aligned_cols=167 Identities=14% Similarity=0.170 Sum_probs=128.4
Q ss_pred HHHHHHHcCC--CCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 142 IEETLRFAGV--SEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 142 ~~~~l~~~~~--~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
...+++.++. .. +.+|||+|||+|.++..+++.+ +.+++++|++ .+++.|++++...++.+++++..+|+.
T Consensus 152 ~~~~~~~~~~~~~~-----~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 225 (335)
T 2r3s_A 152 AQLIAQLVNENKIE-----PLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAF 225 (335)
T ss_dssp HHHHHHHHTC--CC-----CSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTT
T ss_pred HHHHHHhcccccCC-----CCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccc
Confidence 4455555554 33 7899999999999999999987 6799999999 999999999988887778999999998
Q ss_pred CCCCCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHh-hccCCCC
Q 016981 219 QQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC-DAYYLPA 295 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 295 (379)
+.+++++ ||+|++.++++|+++. ..++++++++|||||++++.++..+..... . .....+.... .......
T Consensus 226 ~~~~~~~-~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~ 299 (335)
T 2r3s_A 226 EVDYGND-YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRIT-P----PDAAAFSLVMLATTPNGD 299 (335)
T ss_dssp TSCCCSC-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSC-S----HHHHHHHHHHHHHSSSCC
T ss_pred cCCCCCC-CcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCC-c----hHHHHHHHHHHeeCCCCC
Confidence 8776544 9999999999999655 799999999999999999999765432111 1 1111111110 0111123
Q ss_pred CCCHHHHHHHHHhCCCceeEEEecC
Q 016981 296 WCSTADYVKLLQSLSLEDIKAEDWS 320 (379)
Q Consensus 296 ~~~~~~~~~~l~~aGF~~v~~~~~~ 320 (379)
.++.+++.++|+++||+++++....
T Consensus 300 ~~t~~~~~~ll~~aGf~~~~~~~~~ 324 (335)
T 2r3s_A 300 AYTFAEYESMFSNAGFSHSQLHSLP 324 (335)
T ss_dssp CCCHHHHHHHHHHTTCSEEEEECCT
T ss_pred cCCHHHHHHHHHHCCCCeeeEEECC
Confidence 5689999999999999999987654
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-19 Score=169.35 Aligned_cols=156 Identities=16% Similarity=0.198 Sum_probs=120.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC--CCCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~~~~ 235 (379)
..+|||||||+|.++..+++.+ +.+++++|+ +.+++.|++++...++.+++++..+|+.+. |++ ++||+|++..+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~v 257 (363)
T 3dp7_A 180 PKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQF 257 (363)
T ss_dssp CSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEESC
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEech
Confidence 7899999999999999999987 779999999 999999999998877767899999999886 465 78999999999
Q ss_pred cCCCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCce
Q 016981 236 GEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLED 313 (379)
Q Consensus 236 l~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 313 (379)
++++++. ..+|++++++|||||+|++.+...+........+......... ..........++.++|.++|+++||++
T Consensus 258 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~e~~~ll~~AGf~~ 336 (363)
T 3dp7_A 258 LDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYF-TAMANGNSKMFHSDDLIRCIENAGLEV 336 (363)
T ss_dssp STTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHH-HHSSCSSCCSCCHHHHHHHHHTTTEEE
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhH-HhhhCCCCcccCHHHHHHHHHHcCCeE
Confidence 9999876 5789999999999999999997654422111000000000000 011111123558999999999999998
Q ss_pred eEEE
Q 016981 314 IKAE 317 (379)
Q Consensus 314 v~~~ 317 (379)
+++.
T Consensus 337 v~~~ 340 (363)
T 3dp7_A 337 EEIQ 340 (363)
T ss_dssp SCCC
T ss_pred EEEE
Confidence 8764
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.5e-19 Score=153.85 Aligned_cols=131 Identities=21% Similarity=0.325 Sum_probs=106.0
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
++.+|||+|||+|.++..+ +. +|+|+|+|+.+++.++++. +++.+..+|+.++++++++||+|++..++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 105 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALPFPGESFDVVLLFTTL 105 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCCSCSSCEEEEEEESCT
T ss_pred CCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCCCCCCcEEEEEEcChh
Confidence 3789999999999998877 55 9999999999999999875 47899999999999888999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHH---h-hccCCCCCCCHHHHHHHHHhCC
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI---C-DAYYLPAWCSTADYVKLLQSLS 310 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~l~~aG 310 (379)
+|++++..+++++.++|||||.+++.++.... .+. ...... . ..+....+++.+++.++|+ |
T Consensus 106 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 106 EFVEDVERVLLEARRVLRPGGALVVGVLEALS---------PWA-ALYRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp TTCSCHHHHHHHHHHHEEEEEEEEEEEECTTS---------HHH-HHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred hhcCCHHHHHHHHHHHcCCCCEEEEEecCCcC---------cHH-HHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 99999999999999999999999999865332 111 111111 1 1111234679999999999 8
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.6e-19 Score=159.02 Aligned_cols=141 Identities=13% Similarity=0.186 Sum_probs=111.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH----------c------CCCCCeEEEEccCCCCCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA----------R------GLADKVSFQVGDALQQPF 222 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~----------~------~~~~~i~~~~~d~~~~~~ 222 (379)
+.+|||+|||+|..+..|+++ |.+|+|+|+|+.|++.|+++... . ....++++.++|+.++++
T Consensus 69 ~~~vLD~GCG~G~~~~~La~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~ 147 (252)
T 2gb4_A 69 GLRVFFPLCGKAIEMKWFADR-GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPR 147 (252)
T ss_dssp SCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGG
T ss_pred CCeEEEeCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCc
Confidence 789999999999999999987 78999999999999999876531 0 012579999999999886
Q ss_pred CC-CcccEEEeccccCCCCC--HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCH
Q 016981 223 PD-GQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCST 299 (379)
Q Consensus 223 ~~-~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (379)
.+ ++||+|++..+++|++. ...+++++.++|||||++++.++...... ....+...++
T Consensus 148 ~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~-------------------~~g~~~~~~~ 208 (252)
T 2gb4_A 148 ANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTK-------------------HAGPPFYVPS 208 (252)
T ss_dssp GCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTS-------------------CCCSSCCCCH
T ss_pred ccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCcc-------------------CCCCCCCCCH
Confidence 54 89999999999999964 46799999999999999987665432110 0011122589
Q ss_pred HHHHHHHHhCCCceeEEEecC
Q 016981 300 ADYVKLLQSLSLEDIKAEDWS 320 (379)
Q Consensus 300 ~~~~~~l~~aGF~~v~~~~~~ 320 (379)
+++.++++. +|+++..+.+.
T Consensus 209 ~el~~~l~~-~f~v~~~~~~~ 228 (252)
T 2gb4_A 209 AELKRLFGT-KCSMQCLEEVD 228 (252)
T ss_dssp HHHHHHHTT-TEEEEEEEEEE
T ss_pred HHHHHHhhC-CeEEEEEeccc
Confidence 999999987 59988876544
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=168.19 Aligned_cols=174 Identities=13% Similarity=0.106 Sum_probs=123.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC--CCeEEEEccCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA--DKVSFQVGDAL 218 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~i~~~~~d~~ 218 (379)
.+..+++.+... +.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...+.. .++.++++|+.
T Consensus 71 ~~~~~~~~~~~~------~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~ 143 (299)
T 3g2m_A 71 EAREFATRTGPV------SGPVLELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMS 143 (299)
T ss_dssp HHHHHHHHHCCC------CSCEEEETCTTTTTHHHHHTT-TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTT
T ss_pred HHHHHHHhhCCC------CCcEEEEeccCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchh
Confidence 444555555432 459999999999999999987 789999999999999999998875421 57999999999
Q ss_pred CCCCCCCcccEEEec-cccCCCC--CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCcc----ccchHHHHHHHHHhhc-
Q 016981 219 QQPFPDGQFDLVWSM-ESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE----SLQPWEQELLKKICDA- 290 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~-~~l~~~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~- 290 (379)
++++ +++||+|++. .+++|++ +...++++++++|||||+|++..+.......... .+.......+ .....
T Consensus 144 ~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~ 221 (299)
T 3g2m_A 144 AFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRY-VLHVRH 221 (299)
T ss_dssp BCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC--------------CCEEE
T ss_pred cCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEE-EEEEEE
Confidence 9887 6899999865 5667765 3589999999999999999998865432100000 0000000000 00000
Q ss_pred ------------------------cCCCCCCCHHHHHHHHHhCCCceeEEEecCCCc
Q 016981 291 ------------------------YYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNV 323 (379)
Q Consensus 291 ------------------------~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~ 323 (379)
.....+++++++.++|+++||+++.+..+..+-
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g 278 (299)
T 3g2m_A 222 LPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGG 278 (299)
T ss_dssp EEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTS
T ss_pred eccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCC
Confidence 000024699999999999999999998886543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=155.91 Aligned_cols=152 Identities=20% Similarity=0.339 Sum_probs=115.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||+|.++..+++. +. +|+|+|+|+.+++.|+++... .++.+..+|+.++++++++||+|++..+++
T Consensus 44 ~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 118 (243)
T 3bkw_A 44 GLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLPQDSFDLAYSSLALH 118 (243)
T ss_dssp TCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCCTTCEEEEEEESCGG
T ss_pred CCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCCCCCceEEEEecccc
Confidence 789999999999999999987 56 999999999999999886532 379999999999888888999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCcc------------ccchH------HHHHHHHHhhccCCCCCCCH
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE------------SLQPW------EQELLKKICDAYYLPAWCST 299 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~------------~~~~~------~~~~~~~~~~~~~~~~~~~~ 299 (379)
|++++..++++++++|||||++++............. ..... ...++.. ... ..+++.
T Consensus 119 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~t~ 194 (243)
T 3bkw_A 119 YVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAK---GVV-KHHRTV 194 (243)
T ss_dssp GCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHH---SCC-EEECCH
T ss_pred ccchHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccC---ceE-EEeccH
Confidence 9999999999999999999999998742110000000 00000 0000110 110 113589
Q ss_pred HHHHHHHHhCCCceeEEEec
Q 016981 300 ADYVKLLQSLSLEDIKAEDW 319 (379)
Q Consensus 300 ~~~~~~l~~aGF~~v~~~~~ 319 (379)
+++.++|+++||+++++...
T Consensus 195 ~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 195 GTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp HHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHcCCEeeeeccC
Confidence 99999999999999988754
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-20 Score=169.13 Aligned_cols=148 Identities=9% Similarity=-0.010 Sum_probs=109.8
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC----------------------------CCC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL----------------------------ADK 209 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----------------------------~~~ 209 (379)
++.+|||||||+|.++..++.....+|+|+|+|+.|++.|+++++.... ..+
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA 134 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhh
Confidence 4789999999999888777665324799999999999999987654310 012
Q ss_pred eE-EEEccCCCC-CC---CCCcccEEEeccccCCC----CCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHH
Q 016981 210 VS-FQVGDALQQ-PF---PDGQFDLVWSMESGEHM----PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWE 280 (379)
Q Consensus 210 i~-~~~~d~~~~-~~---~~~~fD~V~~~~~l~~~----~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 280 (379)
+. +..+|+.+. |+ ..++||+|+++.+++|+ ++...++++++++|||||+|++++...... +.
T Consensus 135 i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~------~~--- 205 (263)
T 2a14_A 135 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS------YM--- 205 (263)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE------EE---
T ss_pred hheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc------ce---
Confidence 33 889999874 43 25789999999999986 344789999999999999999997543211 00
Q ss_pred HHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEecC
Q 016981 281 QELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWS 320 (379)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 320 (379)
..........++.+++.++|+++||++++...+.
T Consensus 206 ------~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~ 239 (263)
T 2a14_A 206 ------VGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSP 239 (263)
T ss_dssp ------ETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred ------eCCeEeeccccCHHHHHHHHHHCCCEEEEEeecc
Confidence 0000011124589999999999999999988764
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.4e-19 Score=161.58 Aligned_cols=100 Identities=23% Similarity=0.348 Sum_probs=89.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecc-ccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME-SGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~-~l~ 237 (379)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++. .++.+.++|+.++++ +++||+|++.. +++
T Consensus 51 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~ 122 (263)
T 3pfg_A 51 AASLLDVACGTGMHLRHLADS-FGTVEGLELSADMLAIARRRN------PDAVLHHGDMRDFSL-GRRFSAVTCMFSSIG 122 (263)
T ss_dssp CCEEEEETCTTSHHHHHHTTT-SSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTCCC-SCCEEEEEECTTGGG
T ss_pred CCcEEEeCCcCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhC------CCCEEEECChHHCCc-cCCcCEEEEcCchhh
Confidence 689999999999999999987 679999999999999999874 379999999999887 68999999998 999
Q ss_pred CCC---CHHHHHHHHHHhcCCCCEEEEEeccC
Q 016981 238 HMP---DKSKFVSELARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 238 ~~~---~~~~~l~~~~r~LkpgG~l~i~~~~~ 266 (379)
|++ +...++++++++|||||++++..+..
T Consensus 123 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 154 (263)
T 3pfg_A 123 HLAGQAELDAALERFAAHVLPDGVVVVEPWWF 154 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred hcCCHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 996 45688999999999999999976543
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-18 Score=152.44 Aligned_cols=146 Identities=18% Similarity=0.249 Sum_probs=116.6
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC--CCCCCCcccEEEeccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QPFPDGQFDLVWSMES 235 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~fD~V~~~~~ 235 (379)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++. ..+..+|+.+ .++++++||+|++..+
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~~fD~v~~~~~ 102 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEEQFDCVIFGDV 102 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTTCEEEEEEESC
T ss_pred CCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCCccCEEEECCh
Confidence 3789999999999999999988 789999999999999988642 3688999876 5677789999999999
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccC----------CCCCCCHHHHHHH
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYY----------LPAWCSTADYVKL 305 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 305 (379)
++|++++..+++++.++|||||.+++....... . ..........+. ...+++.+++.++
T Consensus 103 l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~-------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (230)
T 3cc8_A 103 LEHLFDPWAVIEKVKPYIKQNGVILASIPNVSH-------I----SVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRM 171 (230)
T ss_dssp GGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTS-------H----HHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcch-------H----HHHHHHhcCCceeccCCCCCcceEEEecHHHHHHH
Confidence 999999999999999999999999998754321 0 011111111111 1145799999999
Q ss_pred HHhCCCceeEEEecCCCc
Q 016981 306 LQSLSLEDIKAEDWSQNV 323 (379)
Q Consensus 306 l~~aGF~~v~~~~~~~~~ 323 (379)
|+++||+++.+..+....
T Consensus 172 l~~~Gf~~~~~~~~~~~~ 189 (230)
T 3cc8_A 172 FLKAGYSISKVDRVYVDH 189 (230)
T ss_dssp HHHTTEEEEEEEEEECCC
T ss_pred HHHcCCeEEEEEecccCh
Confidence 999999999988776654
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.4e-19 Score=158.16 Aligned_cols=103 Identities=20% Similarity=0.248 Sum_probs=92.9
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecc-cc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME-SG 236 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~-~l 236 (379)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....+. ++.+.++|+.+++++ ++||+|++.. ++
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~-~~fD~v~~~~~~l 112 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNIN-RKFDLITCCLDST 112 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCS-CCEEEEEECTTGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC-CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCcc-CCceEEEEcCccc
Confidence 3789999999999999999987 78999999999999999999887664 799999999988876 8899999998 99
Q ss_pred CCC---CCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 237 EHM---PDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 237 ~~~---~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+|+ .+...++++++++|||||++++...
T Consensus 113 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp GGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 999 4568999999999999999998653
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=150.68 Aligned_cols=139 Identities=22% Similarity=0.336 Sum_probs=115.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++ +++.+..+|+.++++ +++||+|++..+++|
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~ 109 (199)
T 2xvm_A 33 PGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENL-DNLHTRVVDLNNLTF-DRQYDFILSTVVLMF 109 (199)
T ss_dssp SCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEECCGGGCCC-CCCEEEEEEESCGGG
T ss_pred CCeEEEEcCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhCCC-CCcEEEEcchhhCCC-CCCceEEEEcchhhh
Confidence 779999999999999999987 78999999999999999999988776 479999999999887 789999999999999
Q ss_pred CC--CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 239 ~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
++ +...+++++.++|||||++++.+.......+.. ......++.+++.+++++ |+++..
T Consensus 110 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~l~~~~~~--f~~~~~ 170 (199)
T 2xvm_A 110 LEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT-----------------VGFPFAFKEGELRRYYEG--WERVKY 170 (199)
T ss_dssp SCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC-----------------SCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC-----------------CCCCCccCHHHHHHHhcC--CeEEEe
Confidence 97 779999999999999999888775433211100 011124578899999986 998887
Q ss_pred Eec
Q 016981 317 EDW 319 (379)
Q Consensus 317 ~~~ 319 (379)
...
T Consensus 171 ~~~ 173 (199)
T 2xvm_A 171 NED 173 (199)
T ss_dssp ECC
T ss_pred ccc
Confidence 543
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-18 Score=163.82 Aligned_cols=165 Identities=22% Similarity=0.226 Sum_probs=123.5
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC
Q 016981 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 221 (379)
..+++.++... +.+|||||||+|.++..+++.+ +.+++++|+ +.+++.|++++...++.+++++..+|+.+ +
T Consensus 172 ~~~~~~~~~~~-----~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~ 244 (374)
T 1qzz_A 172 EAPADAYDWSA-----VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-P 244 (374)
T ss_dssp HHHHHTSCCTT-----CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-C
T ss_pred HHHHHhCCCCC-----CCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-c
Confidence 34455544433 7899999999999999999987 679999999 99999999999988887789999999876 4
Q ss_pred CCCCcccEEEeccccCCCCCHH--HHHHHHHHhcCCCCEEEEEec--cCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016981 222 FPDGQFDLVWSMESGEHMPDKS--KFVSELARVTAPAGTIIIVTW--CHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (379)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~~--~~l~~~~r~LkpgG~l~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (379)
++. .||+|++..+++|+++.. .++++++++|||||++++.++ ..+... ...+.... ......... ...+
T Consensus 245 ~~~-~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~--~~~~~~~~-~~~~~~~~~---~~~~ 317 (374)
T 1qzz_A 245 LPV-TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGA--DRFFSTLL-DLRMLTFMG---GRVR 317 (374)
T ss_dssp CSC-CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH---------HHHHHHH-HHHHHHHHS---CCCC
T ss_pred CCC-CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCC--Ccchhhhc-chHHHHhCC---CcCC
Confidence 443 499999999999998774 899999999999999999987 432210 11111111 111001111 2356
Q ss_pred CHHHHHHHHHhCCCceeEEEecCC
Q 016981 298 STADYVKLLQSLSLEDIKAEDWSQ 321 (379)
Q Consensus 298 ~~~~~~~~l~~aGF~~v~~~~~~~ 321 (379)
+.+++.++|+++||+++++.....
T Consensus 318 ~~~~~~~ll~~aGf~~~~~~~~~~ 341 (374)
T 1qzz_A 318 TRDEVVDLAGSAGLALASERTSGS 341 (374)
T ss_dssp CHHHHHHHHHTTTEEEEEEEEECC
T ss_pred CHHHHHHHHHHCCCceEEEEECCC
Confidence 999999999999999998876643
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.9e-18 Score=150.16 Aligned_cols=104 Identities=31% Similarity=0.457 Sum_probs=93.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc--c
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES--G 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~--l 236 (379)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....+ .++.+..+|+.++++++++||+|++..+ +
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCeEEEEeccCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 789999999999999999987 5699999999999999999988765 5899999999998887889999999999 5
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
++..+...++++++++|||||++++.+..
T Consensus 116 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 66667789999999999999999998754
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=151.30 Aligned_cols=143 Identities=17% Similarity=0.213 Sum_probs=114.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+ +|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....+. ++.+..+|+.+.++++++||+|++.. .|
T Consensus 31 ~-~vLdiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~--~~ 104 (202)
T 2kw5_A 31 G-KILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDIVADAWEGIVSIF--CH 104 (202)
T ss_dssp S-EEEECCCSCTHHHHHHHTT-TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSCCTTTCSEEEEEC--CC
T ss_pred C-CEEEECCCCCHhHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCCCcCCccEEEEEh--hc
Confidence 6 9999999999999999987 78999999999999999999887764 79999999999888888999999854 44
Q ss_pred C--CCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 239 M--PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 239 ~--~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
+ .+...+++++.++|||||.+++.++........ .........+++++++.++|+ ||+++..
T Consensus 105 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~ 168 (202)
T 2kw5_A 105 LPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYN--------------TGGPKDLDLLPKLETLQSELP--SLNWLIA 168 (202)
T ss_dssp CCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGT--------------SCCSSSGGGCCCHHHHHHHCS--SSCEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCC--------------CCCCCcceeecCHHHHHHHhc--CceEEEE
Confidence 4 356899999999999999999998764432100 000000113569999999999 9999998
Q ss_pred EecCCCc
Q 016981 317 EDWSQNV 323 (379)
Q Consensus 317 ~~~~~~~ 323 (379)
+....+.
T Consensus 169 ~~~~~~~ 175 (202)
T 2kw5_A 169 NNLERNL 175 (202)
T ss_dssp EEEEEEC
T ss_pred EEEEeec
Confidence 7765543
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.6e-18 Score=161.32 Aligned_cols=160 Identities=15% Similarity=0.104 Sum_probs=117.7
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
...+++.++... +.+|||||||+|.++..+++.+ +.+++++|++ .++. +++.+..+..+++++..+|+. .
T Consensus 173 ~~~~~~~~~~~~-----~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~-~ 243 (348)
T 3lst_A 173 HLILARAGDFPA-----TGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFL-R 243 (348)
T ss_dssp HHHHHHHSCCCS-----SEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTT-T
T ss_pred HHHHHHhCCccC-----CceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccCCCCCeEEEecCCC-C
Confidence 455666666554 7899999999999999999987 6789999994 4444 333333345568999999996 4
Q ss_pred CCCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCC
Q 016981 221 PFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (379)
+++ +||+|++..+++|+++. .++|++++++|||||+|++.+...+.... .... ................+
T Consensus 244 ~~p--~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~--~~~~----~~~d~~~~~~~~~~~~t 315 (348)
T 3lst_A 244 EVP--HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGND--AHQS----KEMDFMMLAARTGQERT 315 (348)
T ss_dssp CCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSS--CCHH----HHHHHHHHHTTSCCCCB
T ss_pred CCC--CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC--cchh----hhcChhhhhcCCCcCCC
Confidence 444 89999999999999987 69999999999999999999976544311 1111 11111111111123458
Q ss_pred HHHHHHHHHhCCCceeEEEe
Q 016981 299 TADYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 299 ~~~~~~~l~~aGF~~v~~~~ 318 (379)
.++|.++|+++||+++++..
T Consensus 316 ~~e~~~ll~~aGf~~~~~~~ 335 (348)
T 3lst_A 316 AAELEPLFTAAGLRLDRVVG 335 (348)
T ss_dssp HHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHCCCceEEEEE
Confidence 99999999999999998875
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=5.1e-19 Score=162.82 Aligned_cols=149 Identities=13% Similarity=0.062 Sum_probs=109.3
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc-----------------CCCC------------
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR-----------------GLAD------------ 208 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----------------~~~~------------ 208 (379)
++.+|||||||+|..+..++...+.+|+|+|+|+.|++.|+++++.. +...
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence 37899999999999655454434679999999999999998865421 1000
Q ss_pred CeEEEEccCCC-CCC-----CCCcccEEEeccccCC----CCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccch
Q 016981 209 KVSFQVGDALQ-QPF-----PDGQFDLVWSMESGEH----MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQP 278 (379)
Q Consensus 209 ~i~~~~~d~~~-~~~-----~~~~fD~V~~~~~l~~----~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~ 278 (379)
.+.++.+|+.+ +|+ ++++||+|+++.+++| ++++..+|++++++|||||+|++.......... .
T Consensus 151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~----~-- 224 (289)
T 2g72_A 151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYL----A-- 224 (289)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEE----E--
T ss_pred hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEE----c--
Confidence 15677789887 553 3467999999999999 557899999999999999999998643221100 0
Q ss_pred HHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEecCC
Q 016981 279 WEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (379)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 321 (379)
........+++.+++.++|+++||+++.+..+..
T Consensus 225 ---------~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~ 258 (289)
T 2g72_A 225 ---------GEARLTVVPVSEEEVREALVRSGYKVRDLRTYIM 258 (289)
T ss_dssp ---------TTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred ---------CCeeeeeccCCHHHHHHHHHHcCCeEEEeeEeec
Confidence 0000112356899999999999999998876653
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.3e-19 Score=164.31 Aligned_cols=152 Identities=14% Similarity=0.234 Sum_probs=111.0
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC-------------------------------
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG------------------------------- 205 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~------------------------------- 205 (379)
++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.|++++...+
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 37899999999999999999987 6799999999999999999866543
Q ss_pred --------------------------CCCCeEEEEccCCCCC-----CCCCcccEEEeccccCCCC------CHHHHHHH
Q 016981 206 --------------------------LADKVSFQVGDALQQP-----FPDGQFDLVWSMESGEHMP------DKSKFVSE 248 (379)
Q Consensus 206 --------------------------~~~~i~~~~~d~~~~~-----~~~~~fD~V~~~~~l~~~~------~~~~~l~~ 248 (379)
.+.++.|.++|+...+ +.+++||+|++..+++|+. +..+++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 2258999999997654 5678999999999998774 66899999
Q ss_pred HHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHh--CCCceeEEEe
Q 016981 249 LARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQS--LSLEDIKAED 318 (379)
Q Consensus 249 ~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--aGF~~v~~~~ 318 (379)
++++|||||+|++......... ....+.......+ ... .+.++++.++|.+ +||+.+++..
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~-~~~~~~~~~~~~~----~~~----~~~p~~~~~~L~~~~~GF~~~~~~~ 268 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYG-KRKTLTETIYKNY----YRI----QLKPEQFSSYLTSPDVGFSSYELVA 268 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHH-TTTTSCHHHHHHH----HHC----CCCGGGHHHHHTSTTTCCCEEEEC-
T ss_pred HHHHhCCCcEEEEecCCchhhh-hhhcccHHHHhhh----hcE----EEcHHHHHHHHHhcCCCceEEEEec
Confidence 9999999999998642111000 0011111111111 111 1247899999999 9999887743
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.1e-18 Score=156.88 Aligned_cols=105 Identities=25% Similarity=0.304 Sum_probs=93.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC---CCeEEEEccCCCCC---CCCCcccEEEe
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA---DKVSFQVGDALQQP---FPDGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~i~~~~~d~~~~~---~~~~~fD~V~~ 232 (379)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....+.. .++.+..+|+..++ +++++||+|++
T Consensus 58 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~ 136 (293)
T 3thr_A 58 CHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVIC 136 (293)
T ss_dssp CCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEEE
Confidence 789999999999999999987 779999999999999999887543321 36889999998877 77899999999
Q ss_pred c-cccCCCCC-------HHHHHHHHHHhcCCCCEEEEEec
Q 016981 233 M-ESGEHMPD-------KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 233 ~-~~l~~~~~-------~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
. .+++|+++ +..++++++++|||||++++...
T Consensus 137 ~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 137 LGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp CTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 8 89999999 89999999999999999998864
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.5e-18 Score=160.86 Aligned_cols=153 Identities=17% Similarity=0.181 Sum_probs=119.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-CCCCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~V~~~~~l 236 (379)
+.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++++...++.+++++..+|+.+.+ +.++.||+|++..++
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vl 258 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCL 258 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCG
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccc
Confidence 7899999999999999999987 679999999 8899999999998887778999999998875 234679999999999
Q ss_pred CCCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcee
Q 016981 237 EHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (379)
Q Consensus 237 ~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 314 (379)
+|+++. ..++++++++|||||++++.+...+..... ............. .......++.++|.++|+++||+++
T Consensus 259 h~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~t~~e~~~ll~~aGf~~~ 334 (352)
T 3mcz_A 259 HYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVT--PALSADFSLHMMV--NTNHGELHPTPWIAGVVRDAGLAVG 334 (352)
T ss_dssp GGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSS--SHHHHHHHHHHHH--HSTTCCCCCHHHHHHHHHHTTCEEE
T ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCC--CchHHHhhHHHHh--hCCCCCcCCHHHHHHHHHHCCCcee
Confidence 999876 899999999999999999999765543211 1111111111111 1111124589999999999999998
Q ss_pred EE
Q 016981 315 KA 316 (379)
Q Consensus 315 ~~ 316 (379)
+.
T Consensus 335 ~~ 336 (352)
T 3mcz_A 335 ER 336 (352)
T ss_dssp EE
T ss_pred ee
Confidence 74
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.1e-18 Score=151.66 Aligned_cols=100 Identities=24% Similarity=0.350 Sum_probs=89.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecc-ccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME-SGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~-~l~ 237 (379)
+.+|||+|||+|.++..+++. .+|+|+|+|+.+++.|+++....+ .++.+..+|+.+.+++ ++||+|++.. +++
T Consensus 34 ~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 34 GKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELELP-EPVDAITILCDSLN 108 (243)
T ss_dssp TCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCCCS-SCEEEEEECTTGGG
T ss_pred CCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcCCC-CCcCEEEEeCCchh
Confidence 689999999999999999886 699999999999999999988765 4799999999988775 8899999986 999
Q ss_pred CCC---CHHHHHHHHHHhcCCCCEEEEEe
Q 016981 238 HMP---DKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 238 ~~~---~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|+. +...+++++.++|||||++++..
T Consensus 109 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 109 YLQTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp GCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 984 45789999999999999999854
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.5e-18 Score=158.21 Aligned_cols=163 Identities=17% Similarity=0.167 Sum_probs=123.8
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
...+++.++.. + .+|||+|||+|.++..+++.+ +.+++++|+ +.+++.|++++...++.+++++..+|+.+
T Consensus 157 ~~~~~~~~~~~-----~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~- 228 (334)
T 2ip2_A 157 FHEIPRLLDFR-----G-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ- 228 (334)
T ss_dssp HHHHHHHSCCT-----T-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-
T ss_pred HHHHHHhCCCC-----C-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-
Confidence 44555554432 3 799999999999999999987 679999999 99999999998776666789999999987
Q ss_pred CCCCCcccEEEeccccCCCCCHH--HHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCC
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKS--KFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (379)
+++ ++||+|++..+++|+++.. .++++++++|||||++++.+...+.... ...... ..+....... ...++
T Consensus 229 ~~~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~--~~~~~~-~~~~~~~~~~---~~~~t 301 (334)
T 2ip2_A 229 EVP-SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEP--SPMSVL-WDVHLFMACA---GRHRT 301 (334)
T ss_dssp CCC-SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSC--CHHHHH-HHHHHHHHHS---CCCCB
T ss_pred CCC-CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC--cchhHH-hhhHhHhhCC---CcCCC
Confidence 555 6799999999999998765 9999999999999999999876543211 111111 1111111111 12358
Q ss_pred HHHHHHHHHhCCCceeEEEec
Q 016981 299 TADYVKLLQSLSLEDIKAEDW 319 (379)
Q Consensus 299 ~~~~~~~l~~aGF~~v~~~~~ 319 (379)
.++|.++|+++||+++++...
T Consensus 302 ~~e~~~ll~~aGf~~~~~~~~ 322 (334)
T 2ip2_A 302 TEEVVDLLGRGGFAVERIVDL 322 (334)
T ss_dssp HHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHHCCCceeEEEEC
Confidence 999999999999999988654
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=158.78 Aligned_cols=164 Identities=18% Similarity=0.211 Sum_probs=124.7
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC
Q 016981 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 221 (379)
..+++.++... +.+|||+|||+|.++..+++.+ +.+++++|+ +.+++.|++++...++.+++.+..+|+.+ +
T Consensus 173 ~~l~~~~~~~~-----~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~ 245 (360)
T 1tw3_A 173 DAPAAAYDWTN-----VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-P 245 (360)
T ss_dssp HHHHHHSCCTT-----CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-C
T ss_pred HHHHHhCCCcc-----CcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-C
Confidence 34455555443 7899999999999999999987 679999999 99999999999988887789999999876 3
Q ss_pred CCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEEecc-CCCCCCCccccchHHHHHHHHHhhccCCCCCCC
Q 016981 222 FPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWC-HRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (379)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (379)
++. .||+|++..+++|+++. ..++++++++|||||++++.+.. .++.. ...+.... ......... ...++
T Consensus 246 ~~~-~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~--~~~~~~~~-~~~~~~~~~---~~~~t 318 (360)
T 1tw3_A 246 LPR-KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENS--FNEQFTEL-DLRMLVFLG---GALRT 318 (360)
T ss_dssp CSS-CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGC--CSHHHHHH-HHHHHHHHS---CCCCB
T ss_pred CCC-CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCC--Ccchhhhc-cHHHhhhcC---CcCCC
Confidence 443 49999999999999876 58999999999999999999876 32211 01111111 111101111 23568
Q ss_pred HHHHHHHHHhCCCceeEEEecC
Q 016981 299 TADYVKLLQSLSLEDIKAEDWS 320 (379)
Q Consensus 299 ~~~~~~~l~~aGF~~v~~~~~~ 320 (379)
.++|.++|+++||+++++....
T Consensus 319 ~~e~~~ll~~aGf~~~~~~~~~ 340 (360)
T 1tw3_A 319 REKWDGLAASAGLVVEEVRQLP 340 (360)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEEEeCC
Confidence 9999999999999999887654
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=151.86 Aligned_cols=156 Identities=21% Similarity=0.251 Sum_probs=116.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++..++...+.+|+|+|+|+.+++.|++++...+ .++.+..+|+.++++++++||+|++..+++|
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 101 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKLPFKDESMSFVYSYGTIFH 101 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSCCSCTTCEEEEEECSCGGG
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhCCCCCCceeEEEEcChHHh
Confidence 78999999999998544444447899999999999999999988765 4789999999999888899999999999999
Q ss_pred C--CCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCc-cccchHHHHHHHHHhhcc-CCCCCCCHHHHHHHHHhCCCcee
Q 016981 239 M--PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSE-ESLQPWEQELLKKICDAY-YLPAWCSTADYVKLLQSLSLEDI 314 (379)
Q Consensus 239 ~--~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGF~~v 314 (379)
+ .++..++++++++|||||++++.++...+..... ..+... .+....... ....+++.+++.++++++||...
T Consensus 102 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~ 178 (209)
T 2p8j_A 102 MRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEG---EFLQLERGEKVIHSYVSLEEADKYFKDMKVLFK 178 (209)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETT---EEEECC-CCCEEEEEECHHHHHHTTTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccc---cceeccCCCceeEEecCHHHHHHHHhhcCceee
Confidence 9 5678999999999999999999987654422110 000000 000000000 01135689999999999999876
Q ss_pred EEEec
Q 016981 315 KAEDW 319 (379)
Q Consensus 315 ~~~~~ 319 (379)
+...+
T Consensus 179 ~~~~~ 183 (209)
T 2p8j_A 179 EDRVV 183 (209)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 65433
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.4e-18 Score=150.61 Aligned_cols=101 Identities=22% Similarity=0.374 Sum_probs=88.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEe-ccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWS-MESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~-~~~l~ 237 (379)
+.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|+++. +++.+..+|+.++++ +++||+|++ ..+++
T Consensus 41 ~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~ 112 (239)
T 3bxo_A 41 ASSLLDVACGTGTHLEHFTKEF-GDTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRL-GRKFSAVVSMFSSVG 112 (239)
T ss_dssp CCEEEEETCTTSHHHHHHHHHH-SEEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCC-SSCEEEEEECTTGGG
T ss_pred CCeEEEecccCCHHHHHHHHhC-CcEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHccc-CCCCcEEEEcCchHh
Confidence 7899999999999999999884 59999999999999998864 468999999998876 688999995 55999
Q ss_pred CCCC---HHHHHHHHHHhcCCCCEEEEEeccCC
Q 016981 238 HMPD---KSKFVSELARVTAPAGTIIIVTWCHR 267 (379)
Q Consensus 238 ~~~~---~~~~l~~~~r~LkpgG~l~i~~~~~~ 267 (379)
|+.+ ...++++++++|||||++++.++...
T Consensus 113 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 145 (239)
T 3bxo_A 113 YLKTTEELGAAVASFAEHLEPGGVVVVEPWWFP 145 (239)
T ss_dssp GCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCT
T ss_pred hcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCc
Confidence 9954 47899999999999999999876543
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.2e-18 Score=152.03 Aligned_cols=155 Identities=13% Similarity=0.159 Sum_probs=116.1
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCC-----CcccEEEe
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPD-----GQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-----~~fD~V~~ 232 (379)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++.. ..++.+.++|+.+.+... ..||+|++
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~ 130 (245)
T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQF-FPRVIGLDVSKSALEIAAKENT----AANISYRLLDGLVPEQAAQIHSEIGDANIYM 130 (245)
T ss_dssp TTSCEEEETCTTSHHHHHHHHH-SSCEEEEESCHHHHHHHHHHSC----CTTEEEEECCTTCHHHHHHHHHHHCSCEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHHh-CCCEEEEECCHHHHHHHHHhCc----ccCceEEECcccccccccccccccCccEEEE
Confidence 4789999999999999999998 4599999999999999998762 248999999998864321 24999999
Q ss_pred ccccCCCC--CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHH------HHHHHHhhccCCCCCCCHHHHHH
Q 016981 233 MESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ------ELLKKICDAYYLPAWCSTADYVK 304 (379)
Q Consensus 233 ~~~l~~~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 304 (379)
..+++|++ +...++++++++|||||++++.++..... ..+..... ..+.........+..++.+++.+
T Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (245)
T 3ggd_A 131 RTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCI----DFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIEL 206 (245)
T ss_dssp ESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHH----HHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHH
T ss_pred cchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCcccc----HHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHH
Confidence 99999998 78999999999999999999998754321 00000000 00111112222334568999999
Q ss_pred HHHhCCCceeEEEecCCCc
Q 016981 305 LLQSLSLEDIKAEDWSQNV 323 (379)
Q Consensus 305 ~l~~aGF~~v~~~~~~~~~ 323 (379)
++ +||+++.........
T Consensus 207 ~~--aGf~~~~~~~~~~~~ 223 (245)
T 3ggd_A 207 YF--PDFEILSQGEGLFQS 223 (245)
T ss_dssp HC--TTEEEEEEECCBCCC
T ss_pred Hh--CCCEEEeccccccce
Confidence 99 999999887665443
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.9e-17 Score=141.64 Aligned_cols=136 Identities=13% Similarity=0.044 Sum_probs=111.4
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC
Q 016981 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 221 (379)
..++..+...+ +.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|+++++..++ +++++..+|+.+..
T Consensus 30 ~~~l~~l~~~~-----~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~ 103 (204)
T 3e05_A 30 AVTLSKLRLQD-----DLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGL 103 (204)
T ss_dssp HHHHHHTTCCT-----TCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTC
T ss_pred HHHHHHcCCCC-----CCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhh
Confidence 44555555554 8899999999999999999986 47999999999999999999998887 68999999997654
Q ss_pred CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHH
Q 016981 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (379)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (379)
...++||+|++..+++ +...+++++.++|||||++++..... .+.++
T Consensus 104 ~~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~------------------------------~~~~~ 150 (204)
T 3e05_A 104 DDLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTL------------------------------DTLTK 150 (204)
T ss_dssp TTSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECBH------------------------------HHHHH
T ss_pred hcCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEeccc------------------------------ccHHH
Confidence 3347899999988775 77899999999999999999976321 03567
Q ss_pred HHHHHHhCCCceeEEEe
Q 016981 302 YVKLLQSLSLEDIKAED 318 (379)
Q Consensus 302 ~~~~l~~aGF~~v~~~~ 318 (379)
+.++++++|| .++...
T Consensus 151 ~~~~l~~~g~-~~~~~~ 166 (204)
T 3e05_A 151 AVEFLEDHGY-MVEVAC 166 (204)
T ss_dssp HHHHHHHTTC-EEEEEE
T ss_pred HHHHHHHCCC-ceeEEE
Confidence 8889999999 555443
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-19 Score=159.58 Aligned_cols=104 Identities=20% Similarity=0.166 Sum_probs=89.8
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC--CCCCCcccEEEe---
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWS--- 232 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~--- 232 (379)
++.+|||||||+|..+..+++..+.+|+|||+|+.+++.|+++....+ .++.++.+|+... ++++++||.|+.
T Consensus 60 ~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhcccccccCCceEEEeee
Confidence 388999999999999999988766789999999999999999987765 4788899987664 577889999974
Q ss_pred --ccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 233 --MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 233 --~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
...++|+.++..++++++|+|||||+|.+.+
T Consensus 138 ~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 5567788889999999999999999998754
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.7e-18 Score=155.64 Aligned_cols=163 Identities=13% Similarity=0.091 Sum_probs=110.6
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----CeEEEEccC------CCC--CCCC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-----KVSFQVGDA------LQQ--PFPD 224 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-----~i~~~~~d~------~~~--~~~~ 224 (379)
++.+|||||||+|..+..++...+.+|+|+|+|+.|++.|+++....+... +++|.+.|+ .++ ++++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 378999999999987666665545799999999999999999987655311 267888887 322 3567
Q ss_pred CcccEEEeccccCCC---CCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCc--------------cccchHH---HHHH
Q 016981 225 GQFDLVWSMESGEHM---PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSE--------------ESLQPWE---QELL 284 (379)
Q Consensus 225 ~~fD~V~~~~~l~~~---~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~--------------~~~~~~~---~~~~ 284 (379)
++||+|+|..+++|+ .+...++++++++|||||++++.+.......... ..+.... ...+
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 207 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDRI 207 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTEE
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccccccc
Confidence 899999999999875 4568999999999999999999875321100000 0000000 0000
Q ss_pred HHHhhcc---CCC-CCCCHHHHHHHHHhCCCceeEEEecC
Q 016981 285 KKICDAY---YLP-AWCSTADYVKLLQSLSLEDIKAEDWS 320 (379)
Q Consensus 285 ~~~~~~~---~~~-~~~~~~~~~~~l~~aGF~~v~~~~~~ 320 (379)
....... ..+ .+.+++++.++++++||+.+....+.
T Consensus 208 ~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f~ 247 (302)
T 2vdw_A 208 VVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDFA 247 (302)
T ss_dssp EEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEHH
T ss_pred ceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecChH
Confidence 0000000 001 25578999999999999999887654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-17 Score=141.98 Aligned_cols=133 Identities=17% Similarity=0.102 Sum_probs=108.7
Q ss_pred HHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC
Q 016981 144 ETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP 223 (379)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 223 (379)
.++..+...+ +.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++..+++.++.+..+|+.+....
T Consensus 46 ~~l~~l~~~~-----~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~ 119 (204)
T 3njr_A 46 LTLAALAPRR-----GELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALAD 119 (204)
T ss_dssp HHHHHHCCCT-----TCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT
T ss_pred HHHHhcCCCC-----CCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhccc
Confidence 3445555544 889999999999999999998 8899999999999999999999998866899999999884223
Q ss_pred CCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHH
Q 016981 224 DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYV 303 (379)
Q Consensus 224 ~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (379)
...||+|++...+ +.. +++++.++|||||++++..... . +..++.
T Consensus 120 ~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~---------------~---------------~~~~~~ 164 (204)
T 3njr_A 120 LPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVTL---------------E---------------SETLLT 164 (204)
T ss_dssp SCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECSH---------------H---------------HHHHHH
T ss_pred CCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecCc---------------c---------------cHHHHH
Confidence 4579999987644 556 9999999999999999976321 0 345677
Q ss_pred HHHHhCCCceeEEE
Q 016981 304 KLLQSLSLEDIKAE 317 (379)
Q Consensus 304 ~~l~~aGF~~v~~~ 317 (379)
+++++.||+++.+.
T Consensus 165 ~~l~~~g~~i~~i~ 178 (204)
T 3njr_A 165 QLHARHGGQLLRID 178 (204)
T ss_dssp HHHHHHCSEEEEEE
T ss_pred HHHHhCCCcEEEEE
Confidence 88999999877764
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-18 Score=154.08 Aligned_cols=149 Identities=11% Similarity=0.006 Sum_probs=114.0
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC----------------------------CCC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL----------------------------ADK 209 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----------------------------~~~ 209 (379)
++.+|||+|||+|.++..++.....+|+|+|+|+.+++.|++++...+. ..+
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 135 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRA 135 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhh
Confidence 3789999999999999998876323899999999999999988754320 002
Q ss_pred e-EEEEccCCCCC-CCC---CcccEEEeccccC----CCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHH
Q 016981 210 V-SFQVGDALQQP-FPD---GQFDLVWSMESGE----HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWE 280 (379)
Q Consensus 210 i-~~~~~d~~~~~-~~~---~~fD~V~~~~~l~----~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 280 (379)
+ .+..+|+.+.+ +++ ++||+|++..+++ +++++..+++++.++|||||++++.+...... +..
T Consensus 136 v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~------~~~-- 207 (265)
T 2i62_A 136 IKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSY------YMI-- 207 (265)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE------EEE--
T ss_pred heeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCce------EEc--
Confidence 7 89999998863 355 8999999999999 55677899999999999999999988543210 000
Q ss_pred HHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEecCC
Q 016981 281 QELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (379)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 321 (379)
.........++.+++.++|+++||+++++.....
T Consensus 208 -------~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~ 241 (265)
T 2i62_A 208 -------GEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQ 241 (265)
T ss_dssp -------TTEEEECCCCCHHHHHHHHHHTTCEEEEEEEECC
T ss_pred -------CCccccccccCHHHHHHHHHHCCCEEEEEEEecc
Confidence 0000111245899999999999999999887654
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.7e-17 Score=154.19 Aligned_cols=150 Identities=16% Similarity=0.187 Sum_probs=112.0
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++|+.+|+.+ +++.+ |+|++..++
T Consensus 203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~p~~--D~v~~~~vl 271 (368)
T 3reo_A 203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFD-GVPKG--DAIFIKWIC 271 (368)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCCCC--SEEEEESCG
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCC-CCCCC--CEEEEechh
Confidence 37899999999999999999988 779999999 8888876541 589999999987 66644 999999999
Q ss_pred CCCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhh-ccCCCCCCCHHHHHHHHHhCCCce
Q 016981 237 EHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD-AYYLPAWCSTADYVKLLQSLSLED 313 (379)
Q Consensus 237 ~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~aGF~~ 313 (379)
||+++. .++|++++++|||||+|++.+...+...... ........+.-... ........+.++|+++|+++||++
T Consensus 272 h~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~ 349 (368)
T 3reo_A 272 HDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPS--IATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRG 349 (368)
T ss_dssp GGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCC--HHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCE
T ss_pred hcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc--hhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCee
Confidence 999876 4889999999999999999997654422111 00111111111111 111122458999999999999999
Q ss_pred eEEEecC
Q 016981 314 IKAEDWS 320 (379)
Q Consensus 314 v~~~~~~ 320 (379)
+++....
T Consensus 350 v~~~~~~ 356 (368)
T 3reo_A 350 FKVASCA 356 (368)
T ss_dssp EEEEEEE
T ss_pred eEEEEeC
Confidence 9887553
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.8e-17 Score=152.97 Aligned_cols=162 Identities=15% Similarity=0.148 Sum_probs=118.5
Q ss_pred HHHHHHHHcC-CCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 141 MIEETLRFAG-VSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 141 ~~~~~l~~~~-~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
....+++.++ .. +..+|||||||+|.++..+++++ +.+++++|+ +.+++.|++. ++++|+.+|+.
T Consensus 188 ~~~~~~~~~~~~~-----~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~ 254 (364)
T 3p9c_A 188 ITKKLLELYHGFE-----GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMF 254 (364)
T ss_dssp HHHHHHHHCCTTT-----TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTT
T ss_pred HHHHHHHhccccc-----CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcC
Confidence 3455666654 33 37899999999999999999988 679999999 8888876541 58999999998
Q ss_pred CCCCCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhh-ccCCCC
Q 016981 219 QQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD-AYYLPA 295 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 295 (379)
+ +++.+ |+|++..++|++++. .++|++++++|||||+|++.+...+...... ........+.-... ......
T Consensus 255 ~-~~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~--~~~~~~~~~d~~m~~~~~~g~ 329 (364)
T 3p9c_A 255 K-EVPSG--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEAN--PSSQGVFHVDMIMLAHNPGGR 329 (364)
T ss_dssp T-CCCCC--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSS--HHHHHHHHHHHHHHHHCSSCC
T ss_pred C-CCCCC--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcc--hhhhhHHHhHHHHHhcccCCc
Confidence 7 77654 999999999999765 5899999999999999999997654432111 00000011111111 111122
Q ss_pred CCCHHHHHHHHHhCCCceeEEEecC
Q 016981 296 WCSTADYVKLLQSLSLEDIKAEDWS 320 (379)
Q Consensus 296 ~~~~~~~~~~l~~aGF~~v~~~~~~ 320 (379)
..+.++|.++|+++||+++++....
T Consensus 330 ~rt~~e~~~ll~~AGF~~v~~~~~~ 354 (364)
T 3p9c_A 330 ERYEREFQALARGAGFTGVKSTYIY 354 (364)
T ss_dssp CCBHHHHHHHHHHTTCCEEEEEEEE
T ss_pred cCCHHHHHHHHHHCCCceEEEEEcC
Confidence 4589999999999999999987553
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.1e-17 Score=147.17 Aligned_cols=161 Identities=10% Similarity=0.106 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcc---cHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE
Q 016981 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGI---GGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213 (379)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGt---G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~ 213 (379)
....+.+.++.+.... ...+|||||||+ |.++..+.+.. +.+|+++|+|+.|++.|++++.. .+++.++
T Consensus 61 ~~~~~~~~~~~l~~~~----~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~ 133 (274)
T 2qe6_A 61 NRKVLVRGVRFLAGEA----GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK---DPNTAVF 133 (274)
T ss_dssp HHHHHHHHHHHHHTTT----CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT---CTTEEEE
T ss_pred HhHHHHHHHHHHhhcc----CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC---CCCeEEE
Confidence 3445555555543111 257999999999 99887777665 68999999999999999998843 2589999
Q ss_pred EccCCCCC-----------CCCCcccEEEeccccCCCCC--HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHH
Q 016981 214 VGDALQQP-----------FPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWE 280 (379)
Q Consensus 214 ~~d~~~~~-----------~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 280 (379)
.+|+.+.+ ++.++||+|++..+++|+++ +..++++++++|||||+|++.++..+. + ..... .
T Consensus 134 ~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~--~--~~~~~-~ 208 (274)
T 2qe6_A 134 TADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG--L--PAQQK-L 208 (274)
T ss_dssp ECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS--C--HHHHH-H
T ss_pred EeeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc--h--HHHHH-H
Confidence 99997531 23358999999999999987 799999999999999999999976532 1 11111 1
Q ss_pred HHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeE
Q 016981 281 QELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (379)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 315 (379)
...+......+ .+++.+++.++| .||+.++
T Consensus 209 ~~~~~~~~~~~---~~~s~~ei~~~l--~G~~l~~ 238 (274)
T 2qe6_A 209 ARITRENLGEG---WARTPEEIERQF--GDFELVE 238 (274)
T ss_dssp HHHHHHHHSCC---CCBCHHHHHHTT--TTCEECT
T ss_pred HHHHHhcCCCC---ccCCHHHHHHHh--CCCeEcc
Confidence 12222211111 346999999999 6998765
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=141.89 Aligned_cols=125 Identities=22% Similarity=0.358 Sum_probs=107.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEec-cccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-ESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~-~~l~ 237 (379)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++. +++.+..+|+.+.++++++||+|++. .+++
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~ 119 (195)
T 3cgg_A 47 GAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDF------PEARWVVGDLSVDQISETDFDLIVSAGNVMG 119 (195)
T ss_dssp TCEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTSCCCCCCEEEEEECCCCGG
T ss_pred CCeEEEECCCCCHHHHHHHHC-CCcEEEEcCCHHHHHHHHHhC------CCCcEEEcccccCCCCCCceeEEEECCcHHh
Confidence 789999999999999999987 789999999999999999865 36899999999888878899999998 7888
Q ss_pred CCC--CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeE
Q 016981 238 HMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (379)
Q Consensus 238 ~~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 315 (379)
|+. +...+++++.++|||||.+++...... .++.+++.++++++||+++.
T Consensus 120 ~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~----------------------------~~~~~~~~~~l~~~Gf~~~~ 171 (195)
T 3cgg_A 120 FLAEDGREPALANIHRALGADGRAVIGFGAGR----------------------------GWVFGDFLEVAERVGLELEN 171 (195)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS----------------------------SCCHHHHHHHHHHHTEEEEE
T ss_pred hcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC----------------------------CcCHHHHHHHHHHcCCEEee
Confidence 884 448899999999999999999763211 13688999999999999887
Q ss_pred EEe
Q 016981 316 AED 318 (379)
Q Consensus 316 ~~~ 318 (379)
...
T Consensus 172 ~~~ 174 (195)
T 3cgg_A 172 AFE 174 (195)
T ss_dssp EES
T ss_pred eec
Confidence 753
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=146.57 Aligned_cols=102 Identities=22% Similarity=0.305 Sum_probs=92.2
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++... +++.+.++|+.+.+ ++++||+|++..+++
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~ 125 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPH-CKRLTVIDVMPRAIGRACQRTKRW---SHISWAATDILQFS-TAELFDLIVVAEVLY 125 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGG-EEEEEEEESCHHHHHHHHHHTTTC---SSEEEEECCTTTCC-CSCCEEEEEEESCGG
T ss_pred CCCcEEEEcCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcccC---CCeEEEEcchhhCC-CCCCccEEEEccHHH
Confidence 3789999999999999999987 579999999999999999987653 37999999999987 578999999999999
Q ss_pred CCCCH---HHHHHHHHHhcCCCCEEEEEec
Q 016981 238 HMPDK---SKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 238 ~~~~~---~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|++++ ..+++++.++|||||.+++.+.
T Consensus 126 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 126 YLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 99987 5779999999999999999874
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.1e-17 Score=138.58 Aligned_cols=136 Identities=10% Similarity=0.012 Sum_probs=108.0
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-
Q 016981 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ- 219 (379)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~- 219 (379)
...+++.+...+ +.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.|++++...+++.++ ++.+|..+
T Consensus 14 ~~~~~~~~~~~~-----~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~ 87 (178)
T 3hm2_A 14 RALAISALAPKP-----HETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRA 87 (178)
T ss_dssp HHHHHHHHCCCT-----TEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGG
T ss_pred HHHHHHHhcccC-----CCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhh
Confidence 344555555544 7899999999999999999987 679999999999999999999988886688 88888754
Q ss_pred CCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCH
Q 016981 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCST 299 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (379)
++..+++||+|++..++++ ..+++++.++|||||++++...... +.
T Consensus 88 ~~~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~~------------------------------~~ 133 (178)
T 3hm2_A 88 FDDVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTVE------------------------------SE 133 (178)
T ss_dssp GGGCCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSHH------------------------------HH
T ss_pred hhccCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeeccc------------------------------cH
Confidence 3332378999999999887 6789999999999999998774210 24
Q ss_pred HHHHHHHHhCCCceeEEE
Q 016981 300 ADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 300 ~~~~~~l~~aGF~~v~~~ 317 (379)
..+.+++++.|++...+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~ 151 (178)
T 3hm2_A 134 QMLWALRKQFGGTISSFA 151 (178)
T ss_dssp HHHHHHHHHHCCEEEEEE
T ss_pred HHHHHHHHHcCCeeEEEE
Confidence 456778888898776653
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-18 Score=153.32 Aligned_cols=104 Identities=19% Similarity=0.128 Sum_probs=87.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC--CCCCCcccEEEe-ccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWS-MES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~-~~~ 235 (379)
+.+|||||||+|.++..+++....+|+|+|+|+.|++.|+++....+ .++.++++|+.++ ++++++||+|++ .+.
T Consensus 61 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~ 138 (236)
T 1zx0_A 61 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 138 (236)
T ss_dssp CEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred CCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccCCCceEEEEECCcc
Confidence 78999999999999999977544489999999999999999887655 5799999999887 888899999999 554
Q ss_pred c----CCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 236 G----EHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 236 l----~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+ .|..+...++++++++|||||++++.+.
T Consensus 139 ~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 139 LSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp CBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred cchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 3 1222335789999999999999998764
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-17 Score=151.72 Aligned_cols=136 Identities=18% Similarity=0.209 Sum_probs=111.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...++ ++.+..+|+.+.++ +++||+|++..+++|
T Consensus 121 ~~~vLD~GcG~G~~~~~l~~~-g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~ 196 (286)
T 3m70_A 121 PCKVLDLGCGQGRNSLYLSLL-GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI-QENYDFIVSTVVFMF 196 (286)
T ss_dssp SCEEEEESCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC-CSCEEEEEECSSGGG
T ss_pred CCcEEEECCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc-cCCccEEEEccchhh
Confidence 789999999999999999998 78999999999999999999998876 89999999998876 789999999999999
Q ss_pred CCC--HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 239 MPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 239 ~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
+++ ...+++++.++|||||.+++.........+.. ......++.+++.++++. |+++..
T Consensus 197 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------~~~~~~~~~~~l~~~~~~--~~~~~~ 257 (286)
T 3m70_A 197 LNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP-----------------LPFSFTFAENELKEYYKD--WEFLEY 257 (286)
T ss_dssp SCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS-----------------SCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC-----------------CCccccCCHHHHHHHhcC--CEEEEE
Confidence 964 46999999999999999888765433211110 011124577888888854 888776
Q ss_pred E
Q 016981 317 E 317 (379)
Q Consensus 317 ~ 317 (379)
.
T Consensus 258 ~ 258 (286)
T 3m70_A 258 N 258 (286)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=9e-17 Score=151.91 Aligned_cols=163 Identities=18% Similarity=0.225 Sum_probs=120.7
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC
Q 016981 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 221 (379)
..+++..+... ..+|||||||+|.++..+++++ +.+++..|+ |.+++.|++++...+ .++++++.+|+.+.+
T Consensus 169 ~~~~~~~~~~~-----~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~ 241 (353)
T 4a6d_A 169 RSVLTAFDLSV-----FPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDP 241 (353)
T ss_dssp HHHHHSSCGGG-----CSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSC
T ss_pred HHHHHhcCccc-----CCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCC
Confidence 34455444443 7899999999999999999998 778999998 889999998876544 479999999998766
Q ss_pred CCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCH
Q 016981 222 FPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCST 299 (379)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (379)
.+ .+|+|++..+||+++|. .++|+++++.|+|||+++|.+...+..... +.....+.-..-......-.|.
T Consensus 242 ~~--~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~-----~~~~~~~dl~ml~~~~g~ert~ 314 (353)
T 4a6d_A 242 LP--EADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRG-----PLLTQLYSLNMLVQTEGQERTP 314 (353)
T ss_dssp CC--CCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCC-----CHHHHHHHHHHHHSSSCCCCCH
T ss_pred CC--CceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCC-----CHHHHHHHHHHHHhCCCcCCCH
Confidence 54 47999999999999876 578999999999999999999765432211 1111111111000111123589
Q ss_pred HHHHHHHHhCCCceeEEEec
Q 016981 300 ADYVKLLQSLSLEDIKAEDW 319 (379)
Q Consensus 300 ~~~~~~l~~aGF~~v~~~~~ 319 (379)
++|+++|+++||+++++...
T Consensus 315 ~e~~~ll~~AGf~~v~v~~~ 334 (353)
T 4a6d_A 315 THYHMLLSSAGFRDFQFKKT 334 (353)
T ss_dssp HHHHHHHHHHTCEEEEEECC
T ss_pred HHHHHHHHHCCCceEEEEEc
Confidence 99999999999999988644
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.6e-17 Score=155.11 Aligned_cols=160 Identities=19% Similarity=0.213 Sum_probs=117.2
Q ss_pred HHHHHHHcC-CCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 142 IEETLRFAG-VSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 142 ~~~~l~~~~-~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
...+++.++ .. ++.+|||||||+|.++..+++++ +.+++++|+ +.+++.|++ . +++++..+|+.+
T Consensus 197 ~~~l~~~~~~~~-----~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~ 263 (372)
T 1fp1_D 197 MKRMLEIYTGFE-----GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------L-SGIEHVGGDMFA 263 (372)
T ss_dssp HHHHHHHCCTTT-----TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------C-TTEEEEECCTTT
T ss_pred HHHHHHHhhccC-----CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------c-CCCEEEeCCccc
Confidence 455666654 33 37899999999999999999987 678999999 999987764 1 479999999987
Q ss_pred CCCCCCcccEEEeccccCCCCCHH--HHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016981 220 QPFPDGQFDLVWSMESGEHMPDKS--KFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (379)
+++. ||+|++..+++|+++.. .+|++++++|||||++++.++..+..... .+.......+............+
T Consensus 264 -~~~~--~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~ 338 (372)
T 1fp1_D 264 -SVPQ--GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNT--SEESKLVSTLDNLMFITVGGRER 338 (372)
T ss_dssp -CCCC--EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCS--SHHHHHHHHHHHHHHHHHSCCCE
T ss_pred -CCCC--CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCcc--chHHHHHHHhhHHHHhccCCccC
Confidence 6654 99999999999999887 99999999999999999998765432111 11000011111100000001245
Q ss_pred CHHHHHHHHHhCCCceeEEEec
Q 016981 298 STADYVKLLQSLSLEDIKAEDW 319 (379)
Q Consensus 298 ~~~~~~~~l~~aGF~~v~~~~~ 319 (379)
+.++|.++|+++||+++++...
T Consensus 339 t~~e~~~ll~~aGf~~~~~~~~ 360 (372)
T 1fp1_D 339 TEKQYEKLSKLSGFSKFQVACR 360 (372)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEE
T ss_pred CHHHHHHHHHHCCCceEEEEEc
Confidence 8999999999999999988754
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-16 Score=139.83 Aligned_cols=128 Identities=17% Similarity=0.131 Sum_probs=104.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--CCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~~~ 235 (379)
+.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++...++ +++.++.+|+.+++ +++++||+|+++..
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 7899999999999999999987 67999999999999999999998887 68999999998876 67789999999865
Q ss_pred cCCCC--------CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 016981 236 GEHMP--------DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQ 307 (379)
Q Consensus 236 l~~~~--------~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 307 (379)
..+.. ....+++++.++|||||.+++..-. .. ..+.+.+.++
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------------~~---------------~~~~~~~~~~ 170 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN---------------RG---------------LFEYSLVSFS 170 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC---------------HH---------------HHHHHHHHHH
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC---------------HH---------------HHHHHHHHHH
Confidence 44332 1257999999999999999986511 00 0234567788
Q ss_pred hCCCceeEEE
Q 016981 308 SLSLEDIKAE 317 (379)
Q Consensus 308 ~aGF~~v~~~ 317 (379)
++||+.+.+.
T Consensus 171 ~~g~~~~~~~ 180 (214)
T 1yzh_A 171 QYGMKLNGVW 180 (214)
T ss_dssp HHTCEEEEEE
T ss_pred HCCCeeeecc
Confidence 8899887765
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=144.83 Aligned_cols=151 Identities=21% Similarity=0.263 Sum_probs=109.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++.. .+ +..+|+.++++++++||+|++..++.|
T Consensus 55 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~-----~~--~~~~d~~~~~~~~~~fD~v~~~~~~~~ 126 (260)
T 2avn_A 55 PCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKGV-----KN--VVEAKAEDLPFPSGAFEAVLALGDVLS 126 (260)
T ss_dssp CCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHTC-----SC--EEECCTTSCCSCTTCEEEEEECSSHHH
T ss_pred CCeEEEeCCCcCHHHHHHHHc-CCeEEEEeCCHHHHHHHHhhcC-----CC--EEECcHHHCCCCCCCEEEEEEcchhhh
Confidence 789999999999999999987 7899999999999999998752 12 889999999888899999999887766
Q ss_pred C-CCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCC---ccccchHHHHHHHHHhhc--c----CCCCCCCHHHHHHHHHh
Q 016981 239 M-PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPS---EESLQPWEQELLKKICDA--Y----YLPAWCSTADYVKLLQS 308 (379)
Q Consensus 239 ~-~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~l~~ 308 (379)
+ +++..+++++.++|||||.+++........... ...+ ......+...... . ....+++++++.++
T Consensus 127 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--- 202 (260)
T 2avn_A 127 YVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAW-DQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSL--- 202 (260)
T ss_dssp HCSCHHHHHHHHHHHEEEEEEEEEEEEBHHHHHHHHHHTTCH-HHHHHHHHHCEEEEECSSEEEEEECBCGGGGSSC---
T ss_pred ccccHHHHHHHHHHHcCCCeEEEEEeCChHHHHHHhhcchhH-HHHHHHHhccccccCCCceeEEEeccCHHHHHHh---
Confidence 5 789999999999999999999987542100000 0000 0000111110000 0 00125688888877
Q ss_pred CCCceeEEEecCC
Q 016981 309 LSLEDIKAEDWSQ 321 (379)
Q Consensus 309 aGF~~v~~~~~~~ 321 (379)
+||+++++.....
T Consensus 203 aGf~~~~~~~~~~ 215 (260)
T 2avn_A 203 EGFETVDIRGIGV 215 (260)
T ss_dssp TTEEEEEEEEECS
T ss_pred cCceEEEEECCCC
Confidence 9999998876554
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=139.38 Aligned_cols=125 Identities=21% Similarity=0.170 Sum_probs=106.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...++. ++.+..+|+.+.+ +++||+|+++.++++
T Consensus 61 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~--~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 61 PLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIY-DIALQKTSLLADV--DGKFDLIVANILAEI 137 (205)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-CCEEEESSTTTTC--CSCEEEEEEESCHHH
T ss_pred CCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeccccccC--CCCceEEEECCcHHH
Confidence 7899999999999999988763459999999999999999999988874 4999999987653 588999999887766
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEe
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 318 (379)
+ ..+++++.++|||||++++.++... +.+++.++++++||+.++...
T Consensus 138 ~---~~~l~~~~~~L~~gG~l~~~~~~~~------------------------------~~~~~~~~~~~~Gf~~~~~~~ 184 (205)
T 3grz_A 138 L---LDLIPQLDSHLNEDGQVIFSGIDYL------------------------------QLPKIEQALAENSFQIDLKMR 184 (205)
T ss_dssp H---HHHGGGSGGGEEEEEEEEEEEEEGG------------------------------GHHHHHHHHHHTTEEEEEEEE
T ss_pred H---HHHHHHHHHhcCCCCEEEEEecCcc------------------------------cHHHHHHHHHHcCCceEEeec
Confidence 4 7889999999999999999764321 356788999999999988764
Q ss_pred c
Q 016981 319 W 319 (379)
Q Consensus 319 ~ 319 (379)
.
T Consensus 185 ~ 185 (205)
T 3grz_A 185 A 185 (205)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.71 E-value=5e-17 Score=145.36 Aligned_cols=132 Identities=15% Similarity=0.094 Sum_probs=107.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC---CCcccEEEec
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP---DGQFDLVWSM 233 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~fD~V~~~ 233 (379)
++.+|||+|||+|..+..++... +.+|+|+|+|+.+++.|+++++..++. ++.++++|+.++++. +++||+|++.
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccccccCCccEEEEe
Confidence 37899999999999999999755 679999999999999999999988874 699999999887653 5789999987
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCce
Q 016981 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLED 313 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 313 (379)
. +.+...+++++.++|||||++++..-.. . .. ..+++.+.++++||+.
T Consensus 149 ~----~~~~~~~l~~~~~~LkpgG~l~~~~g~~----------~---~~---------------~~~~~~~~l~~~g~~~ 196 (240)
T 1xdz_A 149 A----VARLSVLSELCLPLVKKNGLFVALKAAS----------A---EE---------------ELNAGKKAITTLGGEL 196 (240)
T ss_dssp C----CSCHHHHHHHHGGGEEEEEEEEEEECC-----------C---HH---------------HHHHHHHHHHHTTEEE
T ss_pred c----cCCHHHHHHHHHHhcCCCCEEEEEeCCC----------c---hH---------------HHHHHHHHHHHcCCeE
Confidence 6 4678999999999999999998864110 0 00 1345778899999999
Q ss_pred eEEEecCCC
Q 016981 314 IKAEDWSQN 322 (379)
Q Consensus 314 v~~~~~~~~ 322 (379)
++...+..+
T Consensus 197 ~~~~~~~~~ 205 (240)
T 1xdz_A 197 ENIHSFKLP 205 (240)
T ss_dssp EEEEEEECT
T ss_pred eEEEEEecC
Confidence 888766544
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-16 Score=140.65 Aligned_cols=129 Identities=13% Similarity=0.072 Sum_probs=103.9
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CCCCCcccEEEeccc
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMES 235 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~V~~~~~ 235 (379)
++.+|||+||| +|.++..+++..+.+|+|+|+|+.+++.|++++...++ ++.+.++|+... ++++++||+|+++-.
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD~I~~npp 132 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGVVEGTFDVIFSAPP 132 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTTCCSCEEEEEECCC
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhcccCceeEEEECCC
Confidence 38999999999 99999999987678999999999999999999998876 899999997544 456789999999866
Q ss_pred cCCCCC-------------------HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCC
Q 016981 236 GEHMPD-------------------KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW 296 (379)
Q Consensus 236 l~~~~~-------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (379)
+.+..+ ...+++++.++|||||++++......
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------------------------- 183 (230)
T 3evz_A 133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE----------------------------- 183 (230)
T ss_dssp CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH-----------------------------
T ss_pred CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH-----------------------------
Confidence 655433 37889999999999999998652110
Q ss_pred CCHHHHHHHHHhCCCceeEEE
Q 016981 297 CSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 297 ~~~~~~~~~l~~aGF~~v~~~ 317 (379)
...+++.++++++||+...+.
T Consensus 184 ~~~~~~~~~l~~~g~~~~~~~ 204 (230)
T 3evz_A 184 KLLNVIKERGIKLGYSVKDIK 204 (230)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHHHHHHHcCCceEEEE
Confidence 024678889999999766553
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-17 Score=144.18 Aligned_cols=111 Identities=19% Similarity=0.272 Sum_probs=95.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++..+ +.+|+|+|+|+. ++.+..+|+.++++++++||+|++..++++
T Consensus 68 ~~~vLDiG~G~G~~~~~l----~~~v~~~D~s~~----------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 127 (215)
T 2zfu_A 68 SLVVADFGCGDCRLASSI----RNPVHCFDLASL----------------DPRVTVCDMAQVPLEDESVDVAVFCLSLMG 127 (215)
T ss_dssp TSCEEEETCTTCHHHHHC----CSCEEEEESSCS----------------STTEEESCTTSCSCCTTCEEEEEEESCCCS
T ss_pred CCeEEEECCcCCHHHHHh----hccEEEEeCCCC----------------CceEEEeccccCCCCCCCEeEEEEehhccc
Confidence 789999999999988776 368999999985 466889999998888899999999999965
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEe
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 318 (379)
.++..+++++.++|||||++++.++... +.+.+++.++|+++||+++....
T Consensus 128 -~~~~~~l~~~~~~L~~gG~l~i~~~~~~----------------------------~~~~~~~~~~l~~~Gf~~~~~~~ 178 (215)
T 2zfu_A 128 -TNIRDFLEEANRVLKPGGLLKVAEVSSR----------------------------FEDVRTFLRAVTKLGFKIVSKDL 178 (215)
T ss_dssp -SCHHHHHHHHHHHEEEEEEEEEEECGGG----------------------------CSCHHHHHHHHHHTTEEEEEEEC
T ss_pred -cCHHHHHHHHHHhCCCCeEEEEEEcCCC----------------------------CCCHHHHHHHHHHCCCEEEEEec
Confidence 8999999999999999999999874311 12789999999999999887653
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.5e-17 Score=137.45 Aligned_cols=106 Identities=10% Similarity=0.109 Sum_probs=87.6
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-CCCCcccEEEecc-c
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSME-S 235 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~V~~~~-~ 235 (379)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++++..++ +++.+.+.|...++ +.+++||+|+++. .
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~ 99 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVREPIRAAIFNLGY 99 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCCSCEEEEEEEEC-
T ss_pred CCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhccCCcCEEEEeCCC
Confidence 3889999999999999999998 88999999999999999999998887 68999998877753 4578899998773 2
Q ss_pred cCC-------C-CCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 236 GEH-------M-PDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 236 l~~-------~-~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+.+ . .+...+++++.++|||||++++..+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp ----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 222 1 23357889999999999999998764
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-17 Score=143.71 Aligned_cols=149 Identities=13% Similarity=0.093 Sum_probs=104.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHH----HHcCCCCCeEEEEccCCCCCCCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALA----AARGLADKVSFQVGDALQQPFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~ 233 (379)
+.+|||+|||+|.++..+++.+ +.+|+|+|+|+.|++.+.+++ ...++ +++.+.++|+.++++++++ |.|+..
T Consensus 28 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~l~~~~~~-d~v~~~ 105 (218)
T 3mq2_A 28 DDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAERLPPLSGV-GELHVL 105 (218)
T ss_dssp SEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTTCCSCCCE-EEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchhhCCCCCCC-CEEEEE
Confidence 8899999999999999999987 689999999999888643333 23444 4899999999999887766 777632
Q ss_pred c---cc--CCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHh
Q 016981 234 E---SG--EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQS 308 (379)
Q Consensus 234 ~---~l--~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (379)
. .+ +|++++..++++++++|||||++++............ .+ ............+.+..++++
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~l~~~l~~ 173 (218)
T 3mq2_A 106 MPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVP-EV-----------GEHPEPTPDSADEWLAPRYAE 173 (218)
T ss_dssp SCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCG-GG-----------TTCCCCCHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEecccccccccc-cc-----------ccCCccchHHHHHHHHHHHHH
Confidence 2 22 2677889999999999999999999542211100000 00 000000000123457789999
Q ss_pred CCCceeEEEecCC
Q 016981 309 LSLEDIKAEDWSQ 321 (379)
Q Consensus 309 aGF~~v~~~~~~~ 321 (379)
+||++++++.+..
T Consensus 174 aGf~i~~~~~~~~ 186 (218)
T 3mq2_A 174 AGWKLADCRYLEP 186 (218)
T ss_dssp TTEEEEEEEEECH
T ss_pred cCCCceeeeccch
Confidence 9999998876543
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=141.29 Aligned_cols=133 Identities=15% Similarity=0.228 Sum_probs=101.8
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC----CCCCCCcccEEEe
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ----QPFPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~~fD~V~~ 232 (379)
++.+|||+|||+|.++..+++..+ .+|+|+|+|+.+++.++++++.. +++.+..+|+.. .++. ++||+|+
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~-~~~D~v~- 148 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIV-EKVDVIY- 148 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTS-CCEEEEE-
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccccC-ccEEEEE-
Confidence 488999999999999999999863 79999999999999999887543 589999999988 6665 7899998
Q ss_pred ccccCCCCCH---HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhC
Q 016981 233 MESGEHMPDK---SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL 309 (379)
Q Consensus 233 ~~~l~~~~~~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 309 (379)
++++++ ..+++++.++|||||++++. +..... +... .. ..+ ..+++. +|+++
T Consensus 149 ----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~-~~~~--~~--~~~--------------~~~~l~-~l~~~ 203 (230)
T 1fbn_A 149 ----EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSI-DVTK--DP--KEI--------------FKEQKE-ILEAG 203 (230)
T ss_dssp ----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGT-CSSS--CH--HHH--------------HHHHHH-HHHHH
T ss_pred ----EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCC-CCCC--CH--HHh--------------hHHHHH-HHHHC
Confidence 345555 77899999999999999997 321110 0000 00 011 135677 89999
Q ss_pred CCceeEEEecC
Q 016981 310 SLEDIKAEDWS 320 (379)
Q Consensus 310 GF~~v~~~~~~ 320 (379)
||+.++..++.
T Consensus 204 Gf~~~~~~~~~ 214 (230)
T 1fbn_A 204 GFKIVDEVDIE 214 (230)
T ss_dssp TEEEEEEEECT
T ss_pred CCEEEEEEccC
Confidence 99998877543
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.7e-17 Score=144.16 Aligned_cols=118 Identities=18% Similarity=0.264 Sum_probs=99.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC-CCCCCC-CCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQQPFP-DGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~-~~~fD~V~~~~~l 236 (379)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++ .+++.+.++|+ ..+|++ +++||+|+++
T Consensus 49 ~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~d~~~~~~~~~~~~fD~v~~~--- 118 (226)
T 3m33_A 49 QTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLARAN------APHADVYEWNGKGELPAGLGAPFGLIVSR--- 118 (226)
T ss_dssp TCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHH------CTTSEEEECCSCSSCCTTCCCCEEEEEEE---
T ss_pred CCeEEEeCCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHh------CCCceEEEcchhhccCCcCCCCEEEEEeC---
Confidence 789999999999999999998 78999999999999999987 25799999999 567887 8899999987
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
.++..+++++.++|||||+++... ...+.+++.+.++++||+.+..
T Consensus 119 ---~~~~~~l~~~~~~LkpgG~l~~~~-------------------------------~~~~~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 119 ---RGPTSVILRLPELAAPDAHFLYVG-------------------------------PRLNVPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp ---SCCSGGGGGHHHHEEEEEEEEEEE-------------------------------SSSCCTHHHHHHHHTTCEEEEE
T ss_pred ---CCHHHHHHHHHHHcCCCcEEEEeC-------------------------------CcCCHHHHHHHHHHCCCeEEEE
Confidence 466788999999999999998111 0224567899999999998877
Q ss_pred EecC
Q 016981 317 EDWS 320 (379)
Q Consensus 317 ~~~~ 320 (379)
....
T Consensus 165 ~~~~ 168 (226)
T 3m33_A 165 DHVS 168 (226)
T ss_dssp EEEE
T ss_pred Eeee
Confidence 6443
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-16 Score=138.50 Aligned_cols=104 Identities=22% Similarity=0.172 Sum_probs=89.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--CCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~~~ 235 (379)
+.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|++++...++ .|+.++.+|+.+++ +++++||.|++...
T Consensus 39 ~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~-~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 39 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 6799999999999999999987 67999999999999999999998887 58999999998865 67789999987654
Q ss_pred cCCCCC--------HHHHHHHHHHhcCCCCEEEEEe
Q 016981 236 GEHMPD--------KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 l~~~~~--------~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
..+... ...+++++.++|||||.+++..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 433321 2678999999999999999875
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-16 Score=148.73 Aligned_cols=146 Identities=16% Similarity=0.249 Sum_probs=110.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
..+|||||||+|.++..+++++ +.+++++|+ +.+++.|++ . +++++..+|+.+ +++ .||+|++..+++
T Consensus 189 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~-~~p--~~D~v~~~~~lh 257 (352)
T 1fp2_A 189 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG------S-NNLTYVGGDMFT-SIP--NADAVLLKYILH 257 (352)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------B-TTEEEEECCTTT-CCC--CCSEEEEESCGG
T ss_pred CceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc------C-CCcEEEeccccC-CCC--CccEEEeehhhc
Confidence 6899999999999999999987 679999999 999988764 1 369999999976 554 399999999999
Q ss_pred CCCCHH--HHHHHHHHhcCC---CCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCc
Q 016981 238 HMPDKS--KFVSELARVTAP---AGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLE 312 (379)
Q Consensus 238 ~~~~~~--~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~ 312 (379)
|+++.. .+|++++++||| ||++++.++..+...... .. ......+........ ...++.++|.++|+++||+
T Consensus 258 ~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~-~~-~~~~~~~d~~~~~~~-g~~~t~~e~~~ll~~aGf~ 334 (352)
T 1fp2_A 258 NWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDEN-QV-TQIKLLMDVNMACLN-GKERNEEEWKKLFIEAGFQ 334 (352)
T ss_dssp GSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCH-HH-HHHHHHHHHHGGGGT-CCCEEHHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCcc-ch-hhhHhhccHHHHhcc-CCCCCHHHHHHHHHHCCCC
Confidence 999887 999999999999 999999987654322110 00 011111111111011 2345899999999999999
Q ss_pred eeEEEe
Q 016981 313 DIKAED 318 (379)
Q Consensus 313 ~v~~~~ 318 (379)
++++..
T Consensus 335 ~~~~~~ 340 (352)
T 1fp2_A 335 HYKISP 340 (352)
T ss_dssp EEEEEE
T ss_pred eeEEEe
Confidence 998765
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.8e-16 Score=141.38 Aligned_cols=139 Identities=15% Similarity=0.224 Sum_probs=111.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
.+++.+++.+. . ++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++...+++ ++.+.++|+.
T Consensus 97 ~l~~~~l~~~~-~-----~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~ 169 (276)
T 2b3t_A 97 CLVEQALARLP-E-----QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWF 169 (276)
T ss_dssp HHHHHHHHHSC-S-----SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTT
T ss_pred HHHHHHHHhcc-c-----CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchh
Confidence 45566666654 2 37899999999999999999876 679999999999999999999988874 7999999987
Q ss_pred CCCCCCCcccEEEecc-------------ccCCCC------------CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCc
Q 016981 219 QQPFPDGQFDLVWSME-------------SGEHMP------------DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSE 273 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~-------------~l~~~~------------~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~ 273 (379)
+. +++++||+|+++- ++.|.+ +...+++++.++|||||++++...
T Consensus 170 ~~-~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~--------- 239 (276)
T 2b3t_A 170 SA-LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG--------- 239 (276)
T ss_dssp GG-GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC---------
T ss_pred hh-cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC---------
Confidence 63 3467899999983 333332 346789999999999999998531
Q ss_pred cccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEE
Q 016981 274 ESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
+...+++.++++++||+.+++.
T Consensus 240 ----------------------~~~~~~~~~~l~~~Gf~~v~~~ 261 (276)
T 2b3t_A 240 ----------------------WQQGEAVRQAFILAGYHDVETC 261 (276)
T ss_dssp ----------------------SSCHHHHHHHHHHTTCTTCCEE
T ss_pred ----------------------chHHHHHHHHHHHCCCcEEEEE
Confidence 1257789999999999877654
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-16 Score=137.43 Aligned_cols=139 Identities=12% Similarity=0.100 Sum_probs=104.3
Q ss_pred CCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC---CCCCCcccE
Q 016981 155 PTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFPDGQFDL 229 (379)
Q Consensus 155 ~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~fD~ 229 (379)
+.+|+.+|||+|||+|.++..+++.. .++|+|+|+|+.|++.++++++.. .|+..+..|.... ++..+++|+
T Consensus 74 ~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~p~~~~~~~~~vDv 150 (233)
T 4df3_A 74 PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARFPEKYRHLVEGVDG 150 (233)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTCGGGGTTTCCCEEE
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccCccccccccceEEE
Confidence 34569999999999999999999986 469999999999999999887654 4899999887653 456788999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhC
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL 309 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 309 (379)
|++. +.|..+...++.++++.|||||+++++...... .. .. +.-...++..+.|+++
T Consensus 151 Vf~d--~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~-------------d~---~~-----p~~~~~~~ev~~L~~~ 207 (233)
T 4df3_A 151 LYAD--VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSI-------------DV---TT-----EPSEVYKREIKTLMDG 207 (233)
T ss_dssp EEEC--CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHH-------------HH---HT-----CCCHHHHHHHHHHHHT
T ss_pred EEEe--ccCChhHHHHHHHHHHhccCCCEEEEEEecccC-------------CC---CC-----ChHHHHHHHHHHHHHC
Confidence 9863 455567788999999999999999987522100 00 00 0000123445778999
Q ss_pred CCceeEEEec
Q 016981 310 SLEDIKAEDW 319 (379)
Q Consensus 310 GF~~v~~~~~ 319 (379)
||+.++..++
T Consensus 208 GF~l~e~i~L 217 (233)
T 4df3_A 208 GLEIKDVVHL 217 (233)
T ss_dssp TCCEEEEEEC
T ss_pred CCEEEEEEcc
Confidence 9999887654
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.7e-16 Score=133.74 Aligned_cols=107 Identities=15% Similarity=0.050 Sum_probs=93.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--CCCCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~~~l 236 (379)
+.+|||+|||+|.++..++.....+|+|+|+|+.+++.|+++++..++ ++++++++|+.+.+ +++++||+|++...+
T Consensus 45 ~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~ 123 (189)
T 3p9n_A 45 GLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGTTSPVDLVLADPPY 123 (189)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCCSSCCSEEEECCCT
T ss_pred CCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhccCCCccEEEECCCC
Confidence 789999999999999988876455899999999999999999998887 68999999998763 446899999998887
Q ss_pred CCC-CCHHHHHHHHHH--hcCCCCEEEEEeccC
Q 016981 237 EHM-PDKSKFVSELAR--VTAPAGTIIIVTWCH 266 (379)
Q Consensus 237 ~~~-~~~~~~l~~~~r--~LkpgG~l~i~~~~~ 266 (379)
++. .+...++.++.+ +|||||.+++.....
T Consensus 124 ~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 124 NVDSADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp TSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 765 567899999999 999999999977543
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-16 Score=141.19 Aligned_cols=130 Identities=17% Similarity=0.129 Sum_probs=106.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--CCCCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~~~l 236 (379)
+.+|||+|||+|.++..++++...+|+|+|+++.+++.|++++...++.+++.++.+|+.+.+ +++++||+|+++-.+
T Consensus 50 ~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy 129 (259)
T 3lpm_A 50 KGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPPY 129 (259)
T ss_dssp CCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCCC
T ss_pred CCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCCC
Confidence 889999999999999999998655999999999999999999999998778999999998874 557899999997554
Q ss_pred CCC--------------------CCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCC
Q 016981 237 EHM--------------------PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW 296 (379)
Q Consensus 237 ~~~--------------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (379)
... .+...+++.+.++|||||++++....
T Consensus 130 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------------------------------- 178 (259)
T 3lpm_A 130 FATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP------------------------------- 178 (259)
T ss_dssp -----------------------HHHHHHHHHHHHHEEEEEEEEEEECT-------------------------------
T ss_pred CCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH-------------------------------
Confidence 332 12357999999999999999985410
Q ss_pred CCHHHHHHHHHhCCCceeEEEec
Q 016981 297 CSTADYVKLLQSLSLEDIKAEDW 319 (379)
Q Consensus 297 ~~~~~~~~~l~~aGF~~v~~~~~ 319 (379)
....++.+.+++.||....+..+
T Consensus 179 ~~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 179 ERLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp TTHHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEEEEe
Confidence 13556778888999988776554
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-16 Score=140.52 Aligned_cols=116 Identities=28% Similarity=0.413 Sum_probs=95.6
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
...+..++......+ +.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....+. ++.+.++|+.
T Consensus 27 ~~~~~~~~~~~~~~~-----~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~ 98 (252)
T 1wzn_A 27 IDFVEEIFKEDAKRE-----VRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVL 98 (252)
T ss_dssp HHHHHHHHHHTCSSC-----CCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGG
T ss_pred HHHHHHHHHHhcccC-----CCEEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChh
Confidence 345666666654333 789999999999999999987 78999999999999999999987764 7999999999
Q ss_pred CCCCCCCcccEEEecc-ccCCCC--CHHHHHHHHHHhcCCCCEEEEEe
Q 016981 219 QQPFPDGQFDLVWSME-SGEHMP--DKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~-~l~~~~--~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+++++ ++||+|++.. .++++. +...++++++++|||||.+++..
T Consensus 99 ~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 99 EIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp GCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcccC-CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 88764 6899999874 444543 45789999999999999998754
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-16 Score=146.11 Aligned_cols=107 Identities=18% Similarity=0.155 Sum_probs=91.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC------CCCCeEEEEccCCCCC----CC--CCc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG------LADKVSFQVGDALQQP----FP--DGQ 226 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------~~~~i~~~~~d~~~~~----~~--~~~ 226 (379)
+.+|||+|||+|.++..+++..+.+|+|+|+|+.|++.|+++....+ ...++.+.++|+..++ ++ +++
T Consensus 35 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 114 (313)
T 3bgv_A 35 DITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMC 114 (313)
T ss_dssp CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTCC
T ss_pred CCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCCC
Confidence 78999999999999999987556799999999999999999887542 1247999999998875 53 458
Q ss_pred ccEEEeccccCCC-CC---HHHHHHHHHHhcCCCCEEEEEecc
Q 016981 227 FDLVWSMESGEHM-PD---KSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 227 fD~V~~~~~l~~~-~~---~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
||+|++..+++|+ .+ ...++++++++|||||.+++..+.
T Consensus 115 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 115 FDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp EEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred EEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 9999999999887 44 479999999999999999998753
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-16 Score=134.01 Aligned_cols=130 Identities=23% Similarity=0.342 Sum_probs=105.6
Q ss_pred HHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC
Q 016981 144 ETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP 223 (379)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 223 (379)
.+++.+...+ +.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.+++++...++..++.+..+|+.+ +++
T Consensus 24 ~~~~~~~~~~-----~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~ 96 (192)
T 1l3i_A 24 LIMCLAEPGK-----NDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALC 96 (192)
T ss_dssp HHHHHHCCCT-----TCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHT
T ss_pred HHHHhcCCCC-----CCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcc
Confidence 3444445443 8899999999999999999875 89999999999999999999988876789999999876 223
Q ss_pred C-CcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHH
Q 016981 224 D-GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADY 302 (379)
Q Consensus 224 ~-~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (379)
. ++||+|++..++++ ...+++++.++|+|||.+++..... . +..++
T Consensus 97 ~~~~~D~v~~~~~~~~---~~~~l~~~~~~l~~gG~l~~~~~~~---------------~---------------~~~~~ 143 (192)
T 1l3i_A 97 KIPDIDIAVVGGSGGE---LQEILRIIKDKLKPGGRIIVTAILL---------------E---------------TKFEA 143 (192)
T ss_dssp TSCCEEEEEESCCTTC---HHHHHHHHHHTEEEEEEEEEEECBH---------------H---------------HHHHH
T ss_pred cCCCCCEEEECCchHH---HHHHHHHHHHhcCCCcEEEEEecCc---------------c---------------hHHHH
Confidence 3 58999999877654 5899999999999999999976321 0 24567
Q ss_pred HHHHHhCCCce
Q 016981 303 VKLLQSLSLED 313 (379)
Q Consensus 303 ~~~l~~aGF~~ 313 (379)
.+.+++.||..
T Consensus 144 ~~~l~~~g~~~ 154 (192)
T 1l3i_A 144 MECLRDLGFDV 154 (192)
T ss_dssp HHHHHHTTCCC
T ss_pred HHHHHHCCCce
Confidence 88999999943
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-16 Score=139.84 Aligned_cols=104 Identities=19% Similarity=0.248 Sum_probs=89.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C--CCCCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P--FPDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~--~~~~~fD~V~~~~ 234 (379)
+.+|||||||+|.++..+++.. +..|+|+|+|+.+++.|++++...++ .|+.++.+|+.++ + +++++||.|++++
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l-~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL-SNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTC-SSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 6799999999999999999987 67899999999999999999998887 4799999998874 3 6789999999885
Q ss_pred ccCCCCCH--------HHHHHHHHHhcCCCCEEEEEe
Q 016981 235 SGEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 235 ~l~~~~~~--------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
...+.... ..++++++++|||||.+++.+
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 54443222 259999999999999999976
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.3e-17 Score=142.80 Aligned_cols=153 Identities=15% Similarity=0.117 Sum_probs=99.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCC-HHHHHHH---HHHHHHcCCCCCeEEEEccCCCCCCC-CCcccEEEe
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLS-PVQAQRA---NALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s-~~~~~~a---~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~V~~ 232 (379)
+.+|||||||+|.++..+++.. +.+|+|+|+| +.|++.| +++....++ +++.+.++|++++|.. .+.+|.|++
T Consensus 25 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~-~~v~~~~~d~~~l~~~~~d~v~~i~~ 103 (225)
T 3p2e_A 25 DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL-SNVVFVIAAAESLPFELKNIADSISI 103 (225)
T ss_dssp SEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC-SSEEEECCBTTBCCGGGTTCEEEEEE
T ss_pred CCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC-CCeEEEEcCHHHhhhhccCeEEEEEE
Confidence 7899999999999999999755 6789999999 6677666 777766676 4899999999988531 134444444
Q ss_pred ccccCC-----CCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 016981 233 MESGEH-----MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQ 307 (379)
Q Consensus 233 ~~~l~~-----~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 307 (379)
+....+ ..+...++++++|+|||||++++........ +. .. ..... .+ ...+.++..+++.++++
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~-~~---~~----~~~~~-~~-~~~~~~~~~~el~~~l~ 173 (225)
T 3p2e_A 104 LFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSY-EE---AE----IKKRG-LP-LLSKAYFLSEQYKAELS 173 (225)
T ss_dssp ESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC------------------------CCHHHHHSHHHHHHHH
T ss_pred eCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccc-hh---ch----hhhcC-CC-CCChhhcchHHHHHHHH
Confidence 332111 1233578999999999999999944222210 00 00 00000 00 00001112234899999
Q ss_pred hCCCceeEEEecCCC
Q 016981 308 SLSLEDIKAEDWSQN 322 (379)
Q Consensus 308 ~aGF~~v~~~~~~~~ 322 (379)
++||+++..+.+..+
T Consensus 174 ~aGf~v~~~~~~~~~ 188 (225)
T 3p2e_A 174 NSGFRIDDVKELDNE 188 (225)
T ss_dssp HHTCEEEEEEEECHH
T ss_pred HcCCCeeeeeecCHH
Confidence 999999988866543
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-16 Score=149.22 Aligned_cols=125 Identities=14% Similarity=0.215 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHH-------HHcCC-C
Q 016981 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALA-------AARGL-A 207 (379)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~-------~~~~~-~ 207 (379)
.....+..+++.+.+.+ +.+|||||||+|.++..++...++ +|+|||+|+.+++.|+++. +..|+ .
T Consensus 157 t~~~~i~~il~~l~l~~-----gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~ 231 (438)
T 3uwp_A 157 TSFDLVAQMIDEIKMTD-----DDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKH 231 (438)
T ss_dssp THHHHHHHHHHHHCCCT-----TCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCC
T ss_pred CCHHHHHHHHHhcCCCC-----CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34456777777777765 899999999999999999987755 5999999999999998754 33454 2
Q ss_pred CCeEEEEccCCCCCCCC--CcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCC
Q 016981 208 DKVSFQVGDALQQPFPD--GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (379)
Q Consensus 208 ~~i~~~~~d~~~~~~~~--~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 267 (379)
.++.|+++|+.++++.+ ..||+|+++.++ +.++....|.+++++|||||+|++.+...+
T Consensus 232 ~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p 292 (438)
T 3uwp_A 232 AEYTLERGDFLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSSKPFAP 292 (438)
T ss_dssp CEEEEEECCTTSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred CCeEEEECcccCCccccccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEeecccC
Confidence 58999999999987643 479999987765 457788999999999999999999875544
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.6e-16 Score=139.63 Aligned_cols=136 Identities=18% Similarity=0.291 Sum_probs=112.6
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
..++..+...+ +.+|||+|||+|.++..+++.. +.+|+++|+|+.+++.|+++++..++++++.+..+|+.+.
T Consensus 83 ~~i~~~~~~~~-----~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 157 (255)
T 3mb5_A 83 ALIVAYAGISP-----GDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG 157 (255)
T ss_dssp HHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC
T ss_pred HHHHHhhCCCC-----CCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc
Confidence 34555555554 8999999999999999999984 6799999999999999999999988876799999999864
Q ss_pred CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (379)
+++++||+|++ +.+++..+++++.++|||||++++..... . ...
T Consensus 158 -~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~---------------~---------------~~~ 201 (255)
T 3mb5_A 158 -IEEENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAYTPCS---------------N---------------QVM 201 (255)
T ss_dssp -CCCCSEEEEEE-----CSSCGGGGHHHHHHHEEEEEEEEEEESSH---------------H---------------HHH
T ss_pred -cCCCCcCEEEE-----CCCCHHHHHHHHHHHcCCCCEEEEEECCH---------------H---------------HHH
Confidence 66788999997 46778889999999999999999876321 0 245
Q ss_pred HHHHHHHhCC--CceeEEEec
Q 016981 301 DYVKLLQSLS--LEDIKAEDW 319 (379)
Q Consensus 301 ~~~~~l~~aG--F~~v~~~~~ 319 (379)
++.+.|+++| |..+++...
T Consensus 202 ~~~~~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 202 RLHEKLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHHHHHTGGGBSCCEEECC
T ss_pred HHHHHHHHcCCCccccEEEEE
Confidence 6778899999 998877543
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-16 Score=137.77 Aligned_cols=107 Identities=17% Similarity=0.219 Sum_probs=91.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-CCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~V~~~~~ 235 (379)
+.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|+++++..++.+++.++++|+.+++ +.+++||+|++...
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 102 (197)
T 3eey_A 23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLG 102 (197)
T ss_dssp TCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEES
T ss_pred CCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCC
Confidence 7899999999999999999985 36999999999999999999999887678999999998875 55689999998865
Q ss_pred cCC------CC---CHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 236 GEH------MP---DKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 236 l~~------~~---~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+.. .. +...+++++.++|||||++++..+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 103 YLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp BCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 511 11 3357999999999999999998754
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.4e-16 Score=131.14 Aligned_cols=119 Identities=13% Similarity=0.084 Sum_probs=99.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++..+++. + +|+|+|+|+.|++. .+++.+.++|+.+ ++++++||+|+++..+++
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~-~-~v~gvD~s~~~~~~----------~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~ 90 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKR-N-TVVSTDLNIRALES----------HRGGNLVRADLLC-SINQESVDVVVFNPPYVP 90 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTT-S-EEEEEESCHHHHHT----------CSSSCEEECSTTT-TBCGGGCSEEEECCCCBT
T ss_pred CCeEEEeccCccHHHHHHHhc-C-cEEEEECCHHHHhc----------ccCCeEEECChhh-hcccCCCCEEEECCCCcc
Confidence 679999999999999999987 4 99999999999987 2578999999987 566689999999988887
Q ss_pred CCCH---------HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhC
Q 016981 239 MPDK---------SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL 309 (379)
Q Consensus 239 ~~~~---------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 309 (379)
.++. ..+++++.+.| |||++++..... ...+++.++++++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~------------------------------~~~~~l~~~l~~~ 139 (170)
T 3q87_B 91 DTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA------------------------------NRPKEVLARLEER 139 (170)
T ss_dssp TCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG------------------------------GCHHHHHHHHHHT
T ss_pred CCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC------------------------------CCHHHHHHHHHHC
Confidence 6544 67899999999 999999977321 1467899999999
Q ss_pred CCceeEEEecCC
Q 016981 310 SLEDIKAEDWSQ 321 (379)
Q Consensus 310 GF~~v~~~~~~~ 321 (379)
||+.+.+.....
T Consensus 140 gf~~~~~~~~~~ 151 (170)
T 3q87_B 140 GYGTRILKVRKI 151 (170)
T ss_dssp TCEEEEEEEEEC
T ss_pred CCcEEEEEeecc
Confidence 999887765443
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-16 Score=141.93 Aligned_cols=149 Identities=13% Similarity=0.099 Sum_probs=104.5
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC---CCC---CCcccEE
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFP---DGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~---~~~fD~V 230 (379)
++.+|||+|||+|.++..++.+. +.+|+|+|+|+.|++.|++++...++.+++.++++|+.+. +++ +++||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 37799999999999999998876 7899999999999999999999988876799999998762 444 2689999
Q ss_pred EeccccCCCC---------------CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccC---
Q 016981 231 WSMESGEHMP---------------DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYY--- 292 (379)
Q Consensus 231 ~~~~~l~~~~---------------~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 292 (379)
+++-.+++.. ....++.+++++|||||.+.+.+.. .............
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~--------------~~~~~~~l~~~g~~~~ 210 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRI--------------IHDSLQLKKRLRWYSC 210 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHH--------------HHHHHHHGGGBSCEEE
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHH--------------HHHHHhcccceEEEEE
Confidence 9985554432 1134678899999999998775421 0011111111111
Q ss_pred -CCCCCCHHHHHHHHHhCCCceeEEEecC
Q 016981 293 -LPAWCSTADYVKLLQSLSLEDIKAEDWS 320 (379)
Q Consensus 293 -~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 320 (379)
.......+++.++|+++||+.+++..+.
T Consensus 211 ~~~~~~~~~~~~~~l~~~Gf~~v~~~~~~ 239 (254)
T 2h00_A 211 MLGKKCSLAPLKEELRIQGVPKVTYTEFC 239 (254)
T ss_dssp EESSTTSHHHHHHHHHHTTCSEEEEEEEE
T ss_pred CCCChhHHHHHHHHHHHcCCCceEEEEEe
Confidence 1112345889999999999998876654
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.9e-16 Score=141.62 Aligned_cols=123 Identities=20% Similarity=0.295 Sum_probs=103.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++..+++. +.+..+|+.+. +++++||+|+++...++
T Consensus 121 ~~~VLDiGcG~G~l~~~la~~-g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~-~~~~~fD~Vv~n~~~~~ 196 (254)
T 2nxc_A 121 GDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAA-LPFGPFDLLVANLYAEL 196 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHH-GGGCCEEEEEEECCHHH
T ss_pred CCEEEEecCCCcHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhc-CcCCCCCEEEECCcHHH
Confidence 789999999999999998886 569999999999999999999988764 89999988663 44678999999765543
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEe
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 318 (379)
...++.++.++|||||+++++++... ..+++.+.++++||++++...
T Consensus 197 ---~~~~l~~~~~~LkpgG~lils~~~~~------------------------------~~~~v~~~l~~~Gf~~~~~~~ 243 (254)
T 2nxc_A 197 ---HAALAPRYREALVPGGRALLTGILKD------------------------------RAPLVREAMAGAGFRPLEEAA 243 (254)
T ss_dssp ---HHHHHHHHHHHEEEEEEEEEEEEEGG------------------------------GHHHHHHHHHHTTCEEEEEEE
T ss_pred ---HHHHHHHHHHHcCCCCEEEEEeeccC------------------------------CHHHHHHHHHHCCCEEEEEec
Confidence 37899999999999999999874321 366789999999999987754
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.2e-16 Score=139.42 Aligned_cols=135 Identities=14% Similarity=0.203 Sum_probs=111.3
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEccCCC
Q 016981 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAAR-GLADKVSFQVGDALQ 219 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~ 219 (379)
..++..+.+.+ +.+|||+|||+|.++..+++.. +.+|+++|+++.+++.|+++++.. + .+++.+..+|+.+
T Consensus 86 ~~~~~~~~~~~-----~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~ 159 (258)
T 2pwy_A 86 SAMVTLLDLAP-----GMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEE 159 (258)
T ss_dssp HHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGG
T ss_pred HHHHHHcCCCC-----CCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhh
Confidence 45556655554 8899999999999999999984 579999999999999999999877 6 4689999999988
Q ss_pred CCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCH
Q 016981 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCST 299 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (379)
.++++++||+|++ +.+++..+++++.++|||||++++..... . ..
T Consensus 160 ~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~---------------~---------------~~ 204 (258)
T 2pwy_A 160 AELEEAAYDGVAL-----DLMEPWKVLEKAALALKPDRFLVAYLPNI---------------T---------------QV 204 (258)
T ss_dssp CCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESCH---------------H---------------HH
T ss_pred cCCCCCCcCEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCH---------------H---------------HH
Confidence 8777789999997 45677899999999999999999987321 0 13
Q ss_pred HHHHHHHHhCCCceeEEEe
Q 016981 300 ADYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 300 ~~~~~~l~~aGF~~v~~~~ 318 (379)
.++.+.|+++||..+++.+
T Consensus 205 ~~~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 205 LELVRAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHCCCceEEEEE
Confidence 4566778889999877654
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.67 E-value=8e-16 Score=132.08 Aligned_cols=118 Identities=14% Similarity=0.147 Sum_probs=98.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEccCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQ 219 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~ 219 (379)
....+++.+...+ +.+|||+|||+|.++..+++. +.+|+|+|+++.+++.+++++...++.. ++.+..+|+.+
T Consensus 40 ~~~~l~~~~~~~~-----~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~ 113 (194)
T 1dus_A 40 GTKILVENVVVDK-----DDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE 113 (194)
T ss_dssp HHHHHHHHCCCCT-----TCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT
T ss_pred HHHHHHHHcccCC-----CCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc
Confidence 3445556655443 889999999999999999988 8899999999999999999998887743 39999999877
Q ss_pred CCCCCCcccEEEeccccCCC-CCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 220 QPFPDGQFDLVWSMESGEHM-PDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~-~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
. +++++||+|++...+++. .+...+++++.++|||||.+++....
T Consensus 114 ~-~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 159 (194)
T 1dus_A 114 N-VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp T-CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred c-cccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 3 446789999998887763 45679999999999999999998753
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.2e-16 Score=134.03 Aligned_cols=112 Identities=17% Similarity=0.181 Sum_probs=97.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
....+++.+...+ +.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+++ ++.+..+|+.+.
T Consensus 65 ~~~~~~~~l~~~~-----~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~ 137 (210)
T 3lbf_A 65 MVARMTELLELTP-----QSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQG 137 (210)
T ss_dssp HHHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGC
T ss_pred HHHHHHHhcCCCC-----CCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccC
Confidence 4455566666554 899999999999999999998 789999999999999999999988874 899999999887
Q ss_pred CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+..+++||+|++..+++|+++ ++.++|||||++++....
T Consensus 138 ~~~~~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 138 WQARAPFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CGGGCCEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred CccCCCccEEEEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence 666789999999999999976 588999999999997643
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-15 Score=128.74 Aligned_cols=132 Identities=17% Similarity=0.160 Sum_probs=107.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
+...+++.+...+ +.+|||+|||+|.++..+++ .+.+|+|+|+|+.+++.+++++...++ +++.+..+|+.+
T Consensus 23 ~~~~~~~~~~~~~-----~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~- 94 (183)
T 2yxd_A 23 IRAVSIGKLNLNK-----DDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAED- 94 (183)
T ss_dssp HHHHHHHHHCCCT-----TCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHH-
T ss_pred HHHHHHHHcCCCC-----CCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCccc-
Confidence 3344455555443 78999999999999999998 478999999999999999999998887 579999999887
Q ss_pred CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (379)
++++++||+|++..+ .+...+++++.++ |||.+++...... ...
T Consensus 95 ~~~~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~~~------------------------------~~~ 138 (183)
T 2yxd_A 95 VLDKLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIVLE------------------------------NAA 138 (183)
T ss_dssp HGGGCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESCHH------------------------------HHH
T ss_pred cccCCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEecccc------------------------------cHH
Confidence 666689999999888 6778999999998 9999999873210 245
Q ss_pred HHHHHHHhCCCceeEE
Q 016981 301 DYVKLLQSLSLEDIKA 316 (379)
Q Consensus 301 ~~~~~l~~aGF~~v~~ 316 (379)
++.+.|+++||....+
T Consensus 139 ~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 139 KIINEFESRGYNVDAV 154 (183)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHcCCeEEEE
Confidence 6788999999865544
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-16 Score=141.33 Aligned_cols=132 Identities=13% Similarity=0.006 Sum_probs=107.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC---CCcccEEEec
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP---DGQFDLVWSM 233 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~fD~V~~~ 233 (379)
++.+|||||||+|..+..++... +.+|+++|+|+.+++.|+++++..++. ++.++++|+++++.. .++||+|++.
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK-GARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEECcHHHhhcccccCCCceEEEEC
Confidence 47899999999999999999886 679999999999999999999998884 699999999887542 4789999987
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCce
Q 016981 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLED 313 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 313 (379)
. +.+...+++.+.++|||||++++..-... .. ...++.+.+++.||..
T Consensus 159 a----~~~~~~ll~~~~~~LkpgG~l~~~~g~~~-------------~~---------------e~~~~~~~l~~~G~~~ 206 (249)
T 3g89_A 159 A----VAPLCVLSELLLPFLEVGGAAVAMKGPRV-------------EE---------------ELAPLPPALERLGGRL 206 (249)
T ss_dssp S----SCCHHHHHHHHGGGEEEEEEEEEEECSCC-------------HH---------------HHTTHHHHHHHHTEEE
T ss_pred C----cCCHHHHHHHHHHHcCCCeEEEEEeCCCc-------------HH---------------HHHHHHHHHHHcCCeE
Confidence 4 35678999999999999999988651100 00 1234667788899999
Q ss_pred eEEEecCCC
Q 016981 314 IKAEDWSQN 322 (379)
Q Consensus 314 v~~~~~~~~ 322 (379)
+++..+..+
T Consensus 207 ~~~~~~~~p 215 (249)
T 3g89_A 207 GEVLALQLP 215 (249)
T ss_dssp EEEEEEECT
T ss_pred EEEEEeeCC
Confidence 988877554
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.66 E-value=4.3e-16 Score=142.20 Aligned_cols=133 Identities=15% Similarity=0.216 Sum_probs=107.0
Q ss_pred HHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEccCCCC
Q 016981 144 ETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAAR-GLADKVSFQVGDALQQ 220 (379)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~ 220 (379)
.++..+.+.+ +.+|||+|||+|.++..+++.. +.+|+|+|+++.+++.|++++... +. +++.+..+|+.+
T Consensus 101 ~~~~~~~~~~-----~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~- 173 (275)
T 1yb2_A 101 YIIMRCGLRP-----GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIAD- 173 (275)
T ss_dssp -----CCCCT-----TCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTT-
T ss_pred HHHHHcCCCC-----cCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhc-
Confidence 3444444443 8899999999999999999873 679999999999999999999877 64 589999999987
Q ss_pred CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (379)
++++++||+|++ +++++..+++++.++|||||++++.+... . ..+
T Consensus 174 ~~~~~~fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~---------------~---------------~~~ 218 (275)
T 1yb2_A 174 FISDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNF---------------D---------------QSE 218 (275)
T ss_dssp CCCSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSH---------------H---------------HHH
T ss_pred cCcCCCccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeCCH---------------H---------------HHH
Confidence 566788999998 67788899999999999999999987321 0 134
Q ss_pred HHHHHHHhCCCceeEEEe
Q 016981 301 DYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 301 ~~~~~l~~aGF~~v~~~~ 318 (379)
++.+.|+++||..+++..
T Consensus 219 ~~~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 219 KTVLSLSASGMHHLETVE 236 (275)
T ss_dssp HHHHHSGGGTEEEEEEEE
T ss_pred HHHHHHHHCCCeEEEEEE
Confidence 677788899999888765
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-15 Score=152.54 Aligned_cols=105 Identities=22% Similarity=0.296 Sum_probs=92.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHc------CCCCCeEEEEccCCCCCCCCCcccEE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAAR------GLADKVSFQVGDALQQPFPDGQFDLV 230 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~------~~~~~i~~~~~d~~~~~~~~~~fD~V 230 (379)
+.+|||||||+|.++..+++..+ .+|+|+|+|+.|++.|++++... +. .++.|.++|+.++++.+++||+|
T Consensus 722 g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGDa~dLp~~d~sFDlV 800 (950)
T 3htx_A 722 ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGSILEFDSRLHDVDIG 800 (950)
T ss_dssp CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESCTTSCCTTSCSCCEE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECchHhCCcccCCeeEE
Confidence 88999999999999999998752 79999999999999999977643 33 47999999999999888999999
Q ss_pred EeccccCCCCCHH--HHHHHHHHhcCCCCEEEEEecc
Q 016981 231 WSMESGEHMPDKS--KFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 231 ~~~~~l~~~~~~~--~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
++..+++|++++. .++++++++|||| .+++.+..
T Consensus 801 V~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 801 TCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 9999999998865 5899999999999 87777643
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=139.73 Aligned_cols=128 Identities=17% Similarity=0.089 Sum_probs=105.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++++.+++.+++.+.++|+.+.+. +++||+|++...
T Consensus 126 ~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p--- 201 (278)
T 2frn_A 126 DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV--- 201 (278)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC---
T ss_pred CCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc---
Confidence 8899999999999999999985337999999999999999999999887679999999998865 688999998533
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeE
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 315 (379)
.+...++.++.++|||||++++.+........ -...+.+.+.++++||+...
T Consensus 202 -~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~------------------------~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 202 -VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMP------------------------REPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp -SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTT------------------------TTTHHHHHHHHHHTTCEEEE
T ss_pred -hhHHHHHHHHHHHCCCCeEEEEEEeecccccc------------------------ccHHHHHHHHHHHcCCeeEE
Confidence 34478899999999999999998864321000 11466788999999998765
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.8e-17 Score=140.27 Aligned_cols=142 Identities=16% Similarity=0.141 Sum_probs=91.0
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC
Q 016981 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (379)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 217 (379)
..+++.+++.+... .++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++...+. ++++.++|+
T Consensus 15 ~~~~~~~~~~l~~~----~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~ 88 (215)
T 4dzr_A 15 EVLVEEAIRFLKRM----PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADG 88 (215)
T ss_dssp HHHHHHHHHHHTTC----CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHH
T ss_pred HHHHHHHHHHhhhc----CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcch
Confidence 34556666665431 138899999999999999999987 56999999999999999999887765 788999998
Q ss_pred CCCCCCC-----CcccEEEeccccCCCCCH--------------------------HHHHHHHHHhcCCCCEEEEEeccC
Q 016981 218 LQQPFPD-----GQFDLVWSMESGEHMPDK--------------------------SKFVSELARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 218 ~~~~~~~-----~~fD~V~~~~~l~~~~~~--------------------------~~~l~~~~r~LkpgG~l~i~~~~~ 266 (379)
.+ ++++ ++||+|+++-.+.+..+. ..+++++.++|||||++++.+..
T Consensus 89 ~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~- 166 (215)
T 4dzr_A 89 IE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG- 166 (215)
T ss_dssp HH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT-
T ss_pred Hh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC-
Confidence 77 5544 899999997554333221 67888999999999995555421
Q ss_pred CCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHH--hCCCceeEEE
Q 016981 267 RDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQ--SLSLEDIKAE 317 (379)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~aGF~~v~~~ 317 (379)
....+.+.++++ ++||..+.+.
T Consensus 167 -----------------------------~~~~~~~~~~l~~~~~gf~~~~~~ 190 (215)
T 4dzr_A 167 -----------------------------HNQADEVARLFAPWRERGFRVRKV 190 (215)
T ss_dssp -----------------------------TSCHHHHHHHTGGGGGGTEECCEE
T ss_pred -----------------------------CccHHHHHHHHHHhhcCCceEEEE
Confidence 114567888888 8999877654
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=9.3e-16 Score=137.75 Aligned_cols=163 Identities=13% Similarity=0.167 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcc--cHHHHHHHHH-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE
Q 016981 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGI--GGSSRYLAKK-F-GAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213 (379)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGt--G~~~~~l~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~ 213 (379)
....+.+.++.+.... ...+|||||||+ +..+..++.+ . +++|+++|.|+.|++.|++++...+ ..++.|+
T Consensus 62 nr~fl~rav~~l~~~~----g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v 136 (277)
T 3giw_A 62 NRDWMNRAVAHLAKEA----GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYV 136 (277)
T ss_dssp HHHHHHHHHHHHHHTS----CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEE
T ss_pred HHHHHHHHHHHhcccc----CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEE
Confidence 3445555555553211 147899999997 4344555544 3 6899999999999999999886432 2479999
Q ss_pred EccCCCCC----CC--CCccc-----EEEeccccCCCCC---HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchH
Q 016981 214 VGDALQQP----FP--DGQFD-----LVWSMESGEHMPD---KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPW 279 (379)
Q Consensus 214 ~~d~~~~~----~~--~~~fD-----~V~~~~~l~~~~~---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 279 (379)
++|+.+.+ .+ .+.|| .|+++.+|||+++ +..+++++++.|+|||+|++++.+.+.. + . .
T Consensus 137 ~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~-p--~----~ 209 (277)
T 3giw_A 137 EADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFA-P--Q----E 209 (277)
T ss_dssp ECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTS-H--H----H
T ss_pred EecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCC-H--H----H
Confidence 99998752 11 24455 5889999999987 5789999999999999999998765421 1 1 0
Q ss_pred HHHHHHHHhhccCCC-CCCCHHHHHHHHHhCCCceeE
Q 016981 280 EQELLKKICDAYYLP-AWCSTADYVKLLQSLSLEDIK 315 (379)
Q Consensus 280 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~aGF~~v~ 315 (379)
. ..+.........+ .+.+.+++..+|. ||+.++
T Consensus 210 ~-~~~~~~~~~~g~p~~~rs~~ei~~~f~--Glelve 243 (277)
T 3giw_A 210 V-GRVAREYAARNMPMRLRTHAEAEEFFE--GLELVE 243 (277)
T ss_dssp H-HHHHHHHHHTTCCCCCCCHHHHHHTTT--TSEECT
T ss_pred H-HHHHHHHHhcCCCCccCCHHHHHHHhC--CCcccC
Confidence 1 1111222222222 3579999999994 998653
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-16 Score=133.71 Aligned_cols=102 Identities=11% Similarity=0.175 Sum_probs=88.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||+|.++..++... +++|+++|+|+.|++.++++++..|+..++++ .|.... .+.++||+|++..++|
T Consensus 50 ~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~-~~~~~~DvVLa~k~LH 126 (200)
T 3fzg_A 50 VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD-VYKGTYDVVFLLKMLP 126 (200)
T ss_dssp CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH-HTTSEEEEEEEETCHH
T ss_pred CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc-CCCCCcChhhHhhHHH
Confidence 7899999999999999998766 67999999999999999999999887556666 565443 3468899999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
++++.+..+.++++.|||||.++-..
T Consensus 127 lL~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 127 VLKQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp HHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred hhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence 99666778889999999999988766
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=142.77 Aligned_cols=101 Identities=23% Similarity=0.232 Sum_probs=90.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecc---c
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME---S 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~---~ 235 (379)
+.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++++..++.+++.++.+|+.++++++++||+|++.. .
T Consensus 65 ~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~ 143 (340)
T 2fyt_A 65 DKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYF 143 (340)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTT
T ss_pred CCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchhh
Confidence 789999999999999999987335999999997 999999999998887799999999999888888999999876 4
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEE
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTII 260 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~ 260 (379)
+.+..+...++.++.++|||||.++
T Consensus 144 l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 144 LLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp BTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred ccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 5555667889999999999999987
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-15 Score=145.09 Aligned_cols=147 Identities=19% Similarity=0.264 Sum_probs=110.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
..+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ . +++++..+|+.+ +++ .||+|++..+++
T Consensus 194 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~-~~~--~~D~v~~~~vlh 262 (358)
T 1zg3_A 194 LESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------N-ENLNFVGGDMFK-SIP--SADAVLLKWVLH 262 (358)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------C-SSEEEEECCTTT-CCC--CCSEEEEESCGG
T ss_pred CCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------C-CCcEEEeCccCC-CCC--CceEEEEccccc
Confidence 6899999999999999999987 679999999 788877654 2 469999999987 665 499999999999
Q ss_pred CCCCHH--HHHHHHHHhcCC---CCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCc
Q 016981 238 HMPDKS--KFVSELARVTAP---AGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLE 312 (379)
Q Consensus 238 ~~~~~~--~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~ 312 (379)
|+++.. .+|++++++||| ||++++.++..+....... . ......+.-..........++.++|.++|+++||+
T Consensus 263 ~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~-~-~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~ 340 (358)
T 1zg3_A 263 DWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRG-L-TELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFS 340 (358)
T ss_dssp GSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHH-H-HHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccch-h-hhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCC
Confidence 999876 999999999999 9999999876543221100 0 01111111100000011245899999999999999
Q ss_pred eeEEEe
Q 016981 313 DIKAED 318 (379)
Q Consensus 313 ~v~~~~ 318 (379)
++++..
T Consensus 341 ~~~~~~ 346 (358)
T 1zg3_A 341 SYKITP 346 (358)
T ss_dssp EEEEEE
T ss_pred eeEEEe
Confidence 998865
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-16 Score=137.29 Aligned_cols=105 Identities=22% Similarity=0.290 Sum_probs=91.4
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
++.+|||+|||+|.++..+++....+|+|+|+|+.+++.++++... .+++.+..+|+.++++++++||+|++..+++
T Consensus 42 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 42 PEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH---VPQLRWETMDVRKLDFPSASFDVVLEKGTLD 118 (215)
T ss_dssp TTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT---CTTCEEEECCTTSCCSCSSCEEEEEEESHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc---CCCcEEEEcchhcCCCCCCcccEEEECcchh
Confidence 3789999999999999999987433899999999999999998753 2479999999999888888999999988886
Q ss_pred CCC---------------CHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 238 HMP---------------DKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 238 ~~~---------------~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
++. +...+++++.++|||||++++.++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 161 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 654 5588999999999999999998853
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-15 Score=131.86 Aligned_cols=99 Identities=16% Similarity=0.117 Sum_probs=87.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||+|.++..++... +.+|+|+|+|+.+++.+++++...++. ++.+..+|+.+.+ +.++||+|+++.
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~-~~~~~D~i~~~~--- 140 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFP-SEPPFDGVISRA--- 140 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSC-CCSCEEEEECSC---
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEecchhhCC-ccCCcCEEEEec---
Confidence 6799999999999999999876 679999999999999999999988774 5999999998875 457899999754
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.+...+++++.++|+|||++++..
T Consensus 141 -~~~~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 141 -FASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp -SSSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred -cCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 3567899999999999999999874
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.9e-16 Score=137.78 Aligned_cols=113 Identities=14% Similarity=0.109 Sum_probs=86.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ- 219 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~- 219 (379)
.+..+++.+++.+ +.+|||+|||+|.++..++++ +.+|+|+|+|+.|++.|++++... .+.....++..
T Consensus 33 ~~~~il~~l~l~~-----g~~VLDlGcGtG~~a~~La~~-g~~V~gvD~S~~ml~~Ar~~~~~~----~v~~~~~~~~~~ 102 (261)
T 3iv6_A 33 DRENDIFLENIVP-----GSTVAVIGASTRFLIEKALER-GASVTVFDFSQRMCDDLAEALADR----CVTIDLLDITAE 102 (261)
T ss_dssp HHHHHHHTTTCCT-----TCEEEEECTTCHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTSSS----CCEEEECCTTSC
T ss_pred HHHHHHHhcCCCC-----cCEEEEEeCcchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhc----cceeeeeecccc
Confidence 4455666666554 889999999999999999987 789999999999999999987543 12222222211
Q ss_pred -CCCCCCcccEEEeccccCCCC--CHHHHHHHHHHhcCCCCEEEEEec
Q 016981 220 -QPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 220 -~~~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
....+++||+|++..+++|+. +...+++++.++| |||+++++..
T Consensus 103 ~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 103 IPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp CCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred cccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 111257899999999999985 4467999999999 9999999863
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-15 Score=137.47 Aligned_cols=135 Identities=20% Similarity=0.268 Sum_probs=110.5
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
..++..+.+.+ +.+|||+|||+|.++..+++.. +.+|+++|+|+.+++.|+++++..++.+++.+..+|+.+.
T Consensus 102 ~~i~~~~~~~~-----~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 176 (277)
T 1o54_A 102 SFIAMMLDVKE-----GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG 176 (277)
T ss_dssp HHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC
T ss_pred HHHHHHhCCCC-----CCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc
Confidence 44555555554 8899999999999999999984 5799999999999999999999888766899999998876
Q ss_pred CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (379)
+++++||+|++ +.+++..+++++.++|+|||++++..... . ...
T Consensus 177 -~~~~~~D~V~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~---------------~---------------~~~ 220 (277)
T 1o54_A 177 -FDEKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPTT---------------N---------------QVQ 220 (277)
T ss_dssp -CSCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESSH---------------H---------------HHH
T ss_pred -ccCCccCEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeCCH---------------H---------------HHH
Confidence 55678999997 45677899999999999999999987321 0 134
Q ss_pred HHHHHHHhCCCceeEEEe
Q 016981 301 DYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 301 ~~~~~l~~aGF~~v~~~~ 318 (379)
++.+.|+++||..+++..
T Consensus 221 ~~~~~l~~~gf~~~~~~~ 238 (277)
T 1o54_A 221 ETLKKLQELPFIRIEVWE 238 (277)
T ss_dssp HHHHHHHHSSEEEEEEEC
T ss_pred HHHHHHHHCCCceeEEEE
Confidence 566788889999887653
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-15 Score=142.82 Aligned_cols=102 Identities=25% Similarity=0.246 Sum_probs=91.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC-
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE- 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~- 237 (379)
+.+|||+|||+|.++..+++....+|+|+|+|+ +++.|+++++..++.+++.++.+|++++++++++||+|++..+.+
T Consensus 67 ~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~ 145 (349)
T 3q7e_A 67 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC 145 (349)
T ss_dssp TCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred CCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccccc
Confidence 789999999999999999987434999999994 999999999999987789999999999988889999999976544
Q ss_pred --CCCCHHHHHHHHHHhcCCCCEEEE
Q 016981 238 --HMPDKSKFVSELARVTAPAGTIII 261 (379)
Q Consensus 238 --~~~~~~~~l~~~~r~LkpgG~l~i 261 (379)
+..+...++.++.++|||||+++.
T Consensus 146 l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 146 LFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 447789999999999999999874
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-15 Score=142.63 Aligned_cols=103 Identities=22% Similarity=0.288 Sum_probs=92.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...++ +++++.+|+.+.+.++++||+|+++..++
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~-g~~V~gvDis~~al~~A~~n~~~~~~--~v~~~~~D~~~~~~~~~~fD~Ii~npp~~ 309 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM-GAEVVGVEDDLASVLSLQKGLEANAL--KAQALHSDVDEALTEEARFDIIVTNPPFH 309 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT-TCEEEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTTTTSCTTCCEEEEEECCCCC
T ss_pred CCCEEEEEeeeCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCC--CeEEEEcchhhccccCCCeEEEEECCchh
Confidence 3789999999999999999997 78999999999999999999998875 48999999998876668999999998888
Q ss_pred C-----CCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 238 H-----MPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 238 ~-----~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+ ..+...+++++.++|||||.++++.
T Consensus 310 ~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~ 340 (381)
T 3dmg_A 310 VGGAVILDVAQAFVNVAAARLRPGGVFFLVS 340 (381)
T ss_dssp TTCSSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcccccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 7 3455789999999999999999976
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.2e-15 Score=132.13 Aligned_cols=104 Identities=22% Similarity=0.264 Sum_probs=90.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C-CCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-FPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~~~~fD~V~~~~~ 235 (379)
+.+|||+|||+|..+..+++.. +.+|+++|+++.+++.|+++++..++.+++.++.+|+.+. + ..+++||+|++...
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~ 151 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDAA 151 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEETT
T ss_pred CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcCc
Confidence 7899999999999999999955 7899999999999999999999998877999999999774 3 33689999997643
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
..+...+++++.++|||||++++.+..
T Consensus 152 ---~~~~~~~l~~~~~~LkpgG~lv~d~~~ 178 (232)
T 3ntv_A 152 ---KAQSKKFFEIYTPLLKHQGLVITDNVL 178 (232)
T ss_dssp ---SSSHHHHHHHHGGGEEEEEEEEEECTT
T ss_pred ---HHHHHHHHHHHHHhcCCCeEEEEeeCC
Confidence 455688999999999999999886643
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.62 E-value=8.5e-16 Score=130.49 Aligned_cols=113 Identities=14% Similarity=0.116 Sum_probs=93.0
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC---CCCcccEEEecc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF---PDGQFDLVWSME 234 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~fD~V~~~~ 234 (379)
++.+|||+|||+ +++|+|+.|++.|+++.. .++.+.++|+.++++ ++++||+|++..
T Consensus 12 ~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~-----~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~ 71 (176)
T 2ld4_A 12 AGQFVAVVWDKS---------------SPVEALKGLVDKLQALTG-----NEGRVSVENIKQLLQSAHKESSFDIILSGL 71 (176)
T ss_dssp TTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTT-----TTSEEEEEEGGGGGGGCCCSSCEEEEEECC
T ss_pred CCCEEEEecCCc---------------eeeeCCHHHHHHHHHhcc-----cCcEEEEechhcCccccCCCCCEeEEEECC
Confidence 489999999996 239999999999998753 358999999998876 789999999999
Q ss_pred ccCCC-CCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCC
Q 016981 235 SGEHM-PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSL 311 (379)
Q Consensus 235 ~l~~~-~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 311 (379)
+++|+ +++..++++++|+|||||++++......... ... ...+.+++.++|+++||
T Consensus 72 ~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~------------------~~~---~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 72 VPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVD------------------NNS---KVKTASKLCSALTLSGL 128 (176)
T ss_dssp STTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSC------------------SSS---SSCCHHHHHHHHHHTTC
T ss_pred hhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccc------------------ccc---ccCCHHHHHHHHHHCCC
Confidence 99999 9999999999999999999999653221100 011 12478999999999999
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=132.41 Aligned_cols=106 Identities=15% Similarity=0.063 Sum_probs=89.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEccCCCCC--CCCCc-ccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQP--FPDGQ-FDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~--~~~~~-fD~V~~~~ 234 (379)
+.+|||+|||+|.++..++.....+|+|+|+|+.+++.|+++++..++. +++.+..+|+.+.. +++++ ||+|++..
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 133 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP 133 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred CCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECC
Confidence 7899999999999999877764469999999999999999999988874 58999999987753 23578 99999987
Q ss_pred ccCCCCCHHHHHHHH--HHhcCCCCEEEEEecc
Q 016981 235 SGEHMPDKSKFVSEL--ARVTAPAGTIIIVTWC 265 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~--~r~LkpgG~l~i~~~~ 265 (379)
.+ +..+...+++.+ .++|||||.+++....
T Consensus 134 ~~-~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 134 PF-HFNLAEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp CS-SSCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred CC-CCccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 74 356678889999 6789999999987743
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=4e-15 Score=130.66 Aligned_cols=126 Identities=13% Similarity=0.085 Sum_probs=105.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
++.+|||||||+|.++..+++.. ..+|+++|+++.+++.|+++++.+++.+++.+..+|..+...+++.||+|+..++.
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGmG 100 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGMG 100 (230)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC
T ss_pred CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCCc
Confidence 37899999999999999999975 45899999999999999999999999888999999988765444479998866554
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
.. -...++.+..+.|+++|+|+++... ..+.++++|.+.||.+++.
T Consensus 101 g~--lI~~IL~~~~~~l~~~~~lIlqp~~--------------------------------~~~~lr~~L~~~Gf~i~~E 146 (230)
T 3lec_A 101 GR--LIADILNNDIDKLQHVKTLVLQPNN--------------------------------REDDLRKWLAANDFEIVAE 146 (230)
T ss_dssp HH--HHHHHHHHTGGGGTTCCEEEEEESS--------------------------------CHHHHHHHHHHTTEEEEEE
T ss_pred hH--HHHHHHHHHHHHhCcCCEEEEECCC--------------------------------ChHHHHHHHHHCCCEEEEE
Confidence 42 2367888999999999999987621 3678899999999998876
Q ss_pred E
Q 016981 317 E 317 (379)
Q Consensus 317 ~ 317 (379)
.
T Consensus 147 ~ 147 (230)
T 3lec_A 147 D 147 (230)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.61 E-value=4.4e-15 Score=129.90 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=80.1
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC----CCCCCcccEEEe
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~V~~ 232 (379)
++.+|||+|||+|.++..+++.. +.+|+|+|+|+.|++.+.++.+.. .++.++.+|+... ++. ++||+|++
T Consensus 57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~-~~fD~V~~ 132 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIV-EKVDLIYQ 132 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTC-CCEEEEEE
T ss_pred CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhcccc-cceeEEEE
Confidence 48899999999999999999886 369999999999887776666543 4788999998763 444 78999998
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.. ..+ .+...++++++++|||||++++..
T Consensus 133 ~~-~~~-~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 133 DI-AQK-NQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp CC-CST-THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ec-cCh-hHHHHHHHHHHHHhCCCCEEEEEE
Confidence 72 222 223456999999999999999974
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-15 Score=141.06 Aligned_cols=157 Identities=17% Similarity=0.173 Sum_probs=89.8
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcC----------CCCCe
Q 016981 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARG----------LADKV 210 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~----------~~~~i 210 (379)
..++..+.+.+ +.+|||+|||+|.++..+++..+ .+|+|+|+++.+++.|++++...+ ...++
T Consensus 95 ~~~l~~l~~~~-----g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v 169 (336)
T 2b25_A 95 NMILSMMDINP-----GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNV 169 (336)
T ss_dssp HHHHHHHTCCT-----TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCE
T ss_pred HHHHHhcCCCC-----CCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCce
Confidence 33444445544 88999999999999999999753 799999999999999999987632 23589
Q ss_pred EEEEccCCCC--CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHh
Q 016981 211 SFQVGDALQQ--PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC 288 (379)
Q Consensus 211 ~~~~~d~~~~--~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (379)
.+..+|+.+. ++++++||+|++.. +++..++.++.++|||||++++...... .. ...+..+.
T Consensus 170 ~~~~~d~~~~~~~~~~~~fD~V~~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~~-------~~----~~~~~~l~ 233 (336)
T 2b25_A 170 DFIHKDISGATEDIKSLTFDAVALDM-----LNPHVTLPVFYPHLKHGGVCAVYVVNIT-------QV----IELLDGIR 233 (336)
T ss_dssp EEEESCTTCCC-------EEEEEECS-----SSTTTTHHHHGGGEEEEEEEEEEESSHH-------HH----HHHHHHHH
T ss_pred EEEECChHHcccccCCCCeeEEEECC-----CCHHHHHHHHHHhcCCCcEEEEEeCCHH-------HH----HHHHHHHH
Confidence 9999999886 45667899999843 3445589999999999999998774211 11 11222111
Q ss_pred hc---c--------CCCCC------CCHHHHHHHHHhCCCceeEEEecC
Q 016981 289 DA---Y--------YLPAW------CSTADYVKLLQSLSLEDIKAEDWS 320 (379)
Q Consensus 289 ~~---~--------~~~~~------~~~~~~~~~l~~aGF~~v~~~~~~ 320 (379)
.. + ....| ....++.+.|+++||+++++....
T Consensus 234 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~g~y~~~l~~aGF~~v~~~~~~ 282 (336)
T 2b25_A 234 TCELALSCEKISEVIVRDWLVCLAKQKNGILAQKVESKINTDVQLDSQE 282 (336)
T ss_dssp HHTCCEEEEEEECCCCCCEEECC--------------------------
T ss_pred hcCCCcccceEEEecccceEEEeecccccchhhhhcccccccccccccc
Confidence 10 0 00011 011278999999999999887654
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-15 Score=132.99 Aligned_cols=106 Identities=18% Similarity=0.240 Sum_probs=90.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-CCC-C----CCcccEE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPF-P----DGQFDLV 230 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~-~----~~~fD~V 230 (379)
+.+|||+|||+|..+..+++.+ +.+|+++|+++.+++.|+++++..++.++++++.+|+.+ ++. . .++||+|
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V 138 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV 138 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEE
Confidence 7899999999999999999865 679999999999999999999998887789999999855 232 2 2689999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
++....++..+...++..+ ++|||||++++.+..
T Consensus 139 ~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 139 FLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp EECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 9988777765556777777 999999999886643
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.8e-15 Score=141.86 Aligned_cols=104 Identities=24% Similarity=0.257 Sum_probs=91.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
++.+|||+|||+|.++..+++....+|+|+|+| .|++.|+++++..++.+++.++.+|+++++++ ++||+|++..+.+
T Consensus 63 ~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~~ 140 (376)
T 3r0q_C 63 EGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMGY 140 (376)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCCBT
T ss_pred CCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcChhh
Confidence 488999999999999999998733499999999 99999999999999888899999999998876 8999999966555
Q ss_pred CC---CCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 238 HM---PDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 238 ~~---~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
++ .+...++.++.++|||||.+++..
T Consensus 141 ~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 141 FLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp TBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred cccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 54 457889999999999999998754
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-14 Score=130.00 Aligned_cols=104 Identities=21% Similarity=0.289 Sum_probs=89.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CCC--CCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFP--DGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~--~~~fD~V~~~ 233 (379)
+.+|||||||+|..+..+++.+ +.+|+++|+|+.+++.|+++++..++.+++++..+|+.+. +.. .++||+|++.
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d 143 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFID 143 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEEC
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEEC
Confidence 7899999999999999999976 5799999999999999999999999877999999998763 322 3489999986
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
.. ..+...+++++.++|||||+|++.+..
T Consensus 144 ~~---~~~~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 144 AD---KPNNPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp SC---GGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred Cc---hHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 43 345578999999999999999987754
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=7.2e-15 Score=136.82 Aligned_cols=113 Identities=15% Similarity=0.266 Sum_probs=96.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 217 (379)
..+..+++.+.+.+ +.+|||+|||+|.++..+++..+ .+|+|+|+|+.+++.|++++...+++ ++.+..+|+
T Consensus 62 ~~~~~l~~~l~~~~-----~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~-~v~~~~~d~ 135 (317)
T 1dl5_A 62 SLMALFMEWVGLDK-----GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDG 135 (317)
T ss_dssp HHHHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCG
T ss_pred HHHHHHHHhcCCCC-----cCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEECCh
Confidence 35556666666554 89999999999999999998752 56999999999999999999988874 699999999
Q ss_pred CCCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 218 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.+.+.++++||+|++..+++|+. +++.++|||||++++...
T Consensus 136 ~~~~~~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 136 YYGVPEFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp GGCCGGGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEBC
T ss_pred hhccccCCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEEC
Confidence 88654568899999999999986 578899999999999864
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.1e-15 Score=127.91 Aligned_cols=107 Identities=16% Similarity=0.019 Sum_probs=89.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----CCCCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~~~ 234 (379)
+.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...++.+++.++.+|+.+.. ..+++||+|++..
T Consensus 45 ~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~ 124 (187)
T 2fhp_A 45 GGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDP 124 (187)
T ss_dssp SCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECC
Confidence 789999999999999998886446999999999999999999998887668999999987631 2267899999987
Q ss_pred ccCCCCCHHHHHHHH--HHhcCCCCEEEEEeccC
Q 016981 235 SGEHMPDKSKFVSEL--ARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~--~r~LkpgG~l~i~~~~~ 266 (379)
.++ ..+....+..+ .++|||||.+++.....
T Consensus 125 ~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 125 PYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp CGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCC-chhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 743 45667788888 89999999999876443
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3e-15 Score=133.30 Aligned_cols=104 Identities=21% Similarity=0.372 Sum_probs=84.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHH------cCCCCCeEEEEccCCC-CC--CCCCccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAA------RGLADKVSFQVGDALQ-QP--FPDGQFD 228 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~------~~~~~~i~~~~~d~~~-~~--~~~~~fD 228 (379)
+.+|||||||+|.++..+++.. +..|+|+|+|+.|++.|++++.. .+. .|+.++.+|+.+ ++ +++++||
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~~~~~~D 125 (235)
T 3ckk_A 47 QVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFFYKGQLT 125 (235)
T ss_dssp CEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHCCTTCEE
T ss_pred CCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhCCCcCee
Confidence 6799999999999999999887 67999999999999999988764 233 589999999987 55 7789999
Q ss_pred EEEeccccCCCCC--------HHHHHHHHHHhcCCCCEEEEEe
Q 016981 229 LVWSMESGEHMPD--------KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 229 ~V~~~~~l~~~~~--------~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.|++...-.+... ...++++++++|||||.|++..
T Consensus 126 ~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 126 KMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp EEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 9987544333211 1479999999999999999875
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.60 E-value=6.4e-15 Score=134.56 Aligned_cols=113 Identities=16% Similarity=0.238 Sum_probs=96.6
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHc-C-CCCCeEEEEccC
Q 016981 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAAR-G-LADKVSFQVGDA 217 (379)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~-~-~~~~i~~~~~d~ 217 (379)
+..++..+.+.+ +.+|||+|||+|.++..+++.. +.+|+++|+++.+++.|+++++.. + +.+++.+..+|+
T Consensus 88 ~~~i~~~~~~~~-----~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~ 162 (280)
T 1i9g_A 88 AAQIVHEGDIFP-----GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL 162 (280)
T ss_dssp HHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG
T ss_pred HHHHHHHcCCCC-----CCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECch
Confidence 345566666554 8899999999999999999864 579999999999999999999876 4 446899999999
Q ss_pred CCCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 218 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.+.++++++||+|++ +++++..+++++.++|||||++++...
T Consensus 163 ~~~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 163 ADSELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp GGCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred HhcCCCCCceeEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeC
Confidence 988777789999998 456778999999999999999999873
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.1e-15 Score=131.13 Aligned_cols=119 Identities=13% Similarity=0.204 Sum_probs=96.3
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEc
Q 016981 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVG 215 (379)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~ 215 (379)
..++..++...+.. ++.+|||+|||+|..+..+++.+ +++|+++|+|+.+++.|+++++..++. ++++++.+
T Consensus 42 ~~~l~~l~~~~~~~-----~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~g 116 (221)
T 3dr5_A 42 GQLLTTLAATTNGN-----GSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLS 116 (221)
T ss_dssp HHHHHHHHHHSCCT-----TCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECS
T ss_pred HHHHHHHHHhhCCC-----CCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEc
Confidence 34555555554322 24599999999999999999976 679999999999999999999999987 68999999
Q ss_pred cCCCC-C-CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 216 DALQQ-P-FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 216 d~~~~-~-~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
|+.+. + +++++||+|++... ..+...+++++.++|||||++++.+..
T Consensus 117 da~~~l~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~dn~~ 165 (221)
T 3dr5_A 117 RPLDVMSRLANDSYQLVFGQVS---PMDLKALVDAAWPLLRRGGALVLADAL 165 (221)
T ss_dssp CHHHHGGGSCTTCEEEEEECCC---TTTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred CHHHHHHHhcCCCcCeEEEcCc---HHHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 98764 2 43689999998653 345578999999999999999986643
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.9e-15 Score=127.89 Aligned_cols=112 Identities=21% Similarity=0.318 Sum_probs=93.2
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
....+++.+...+ +.+|||+|||+|.++..+++..+ .+|+++|+|+.+++.+++++...++ +++.+..+|+.
T Consensus 65 ~~~~~~~~~~~~~-----~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~ 138 (215)
T 2yxe_A 65 MVGMMCELLDLKP-----GMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY-DNVIVIVGDGT 138 (215)
T ss_dssp HHHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEESCGG
T ss_pred HHHHHHHhhCCCC-----CCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcc
Confidence 4445555555444 88999999999999999999864 7999999999999999999988776 46999999985
Q ss_pred CCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.....+++||+|++..+++|+. +++.++|||||++++...
T Consensus 139 ~~~~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 139 LGYEPLAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp GCCGGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred cCCCCCCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEEC
Confidence 4322357899999999999986 488999999999999864
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-15 Score=129.64 Aligned_cols=120 Identities=13% Similarity=0.048 Sum_probs=94.2
Q ss_pred HHHHHHHHcC-CCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 141 MIEETLRFAG-VSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 141 ~~~~~l~~~~-~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
..+.+++.+. .. ++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++++..++.+++.+..+|+.+
T Consensus 18 ~~~~~~~~l~~~~-----~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 92 (177)
T 2esr_A 18 VRGAIFNMIGPYF-----NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAER 92 (177)
T ss_dssp CHHHHHHHHCSCC-----CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHH
T ss_pred HHHHHHHHHHhhc-----CCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHH
Confidence 4444555544 22 37899999999999999999874469999999999999999999988876689999999877
Q ss_pred C-CCCCCcccEEEeccccCCCCCHHHHHHHHH--HhcCCCCEEEEEeccC
Q 016981 220 Q-PFPDGQFDLVWSMESGEHMPDKSKFVSELA--RVTAPAGTIIIVTWCH 266 (379)
Q Consensus 220 ~-~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~--r~LkpgG~l~i~~~~~ 266 (379)
. +..+++||+|++...++ ......+++.+. ++|||||.+++.....
T Consensus 93 ~~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 93 AIDCLTGRFDLVFLDPPYA-KETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp HHHHBCSCEEEEEECCSSH-HHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred hHHhhcCCCCEEEECCCCC-cchHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 3 43346799999976542 234467777777 9999999999987543
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.60 E-value=4e-15 Score=129.40 Aligned_cols=104 Identities=12% Similarity=0.023 Sum_probs=88.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-CCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||+|.++..++.+...+|+|+|+|+.+++.|+++++..++ ++++++++|+.+ ++..+++||+|++...+
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~- 132 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPPF- 132 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCSS-
T ss_pred CCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhcCCCCCEEEECCCC-
Confidence 789999999999999988876445999999999999999999998887 689999999877 45556789999987663
Q ss_pred CCCCHHHHHHHHHH--hcCCCCEEEEEec
Q 016981 238 HMPDKSKFVSELAR--VTAPAGTIIIVTW 264 (379)
Q Consensus 238 ~~~~~~~~l~~~~r--~LkpgG~l~i~~~ 264 (379)
+..+...+++.+.+ +|||||.+++...
T Consensus 133 ~~~~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 133 RRGLLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp STTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CCCcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 45677888888876 5999999998764
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=135.90 Aligned_cols=102 Identities=24% Similarity=0.256 Sum_probs=89.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc---
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES--- 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~--- 235 (379)
+.+|||+|||+|.++..+++....+|+|+|+| .+++.|+++++..++.+++.++.+|+.++++++++||+|++..+
T Consensus 39 ~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~ 117 (328)
T 1g6q_1 39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYF 117 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTT
T ss_pred CCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchhh
Confidence 78999999999999999998733499999999 59999999999998888899999999998887789999998754
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEE
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIII 261 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i 261 (379)
+.+..+...++.++.++|||||.++.
T Consensus 118 l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 118 LLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp BSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 34456678999999999999999874
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.60 E-value=6.9e-15 Score=141.14 Aligned_cols=120 Identities=15% Similarity=0.183 Sum_probs=96.5
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC-CEEEEEeCCHHHHHHH-------HHHHHHcCCC-CCe
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRA-------NALAAARGLA-DKV 210 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a-------~~~~~~~~~~-~~i 210 (379)
..+..+++.+.+.. +.+|||+|||+|.++..+++..+ .+|+|+|+++.+++.| ++++...|+. .++
T Consensus 229 ~~v~~ml~~l~l~~-----g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV 303 (433)
T 1u2z_A 229 NFLSDVYQQCQLKK-----GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNV 303 (433)
T ss_dssp HHHHHHHHHTTCCT-----TCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCE
T ss_pred HHHHHHHHhcCCCC-----CCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCce
Confidence 35566777766654 89999999999999999999764 5899999999999998 8888887753 689
Q ss_pred EEEEccCCCC--CC--CCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 211 SFQVGDALQQ--PF--PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 211 ~~~~~d~~~~--~~--~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
.+.++|.... ++ ..++||+|+++.++ +.++...+|+++.++|||||++++.+..
T Consensus 304 ~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d~f 361 (433)
T 1u2z_A 304 EFSLKKSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLKSL 361 (433)
T ss_dssp EEEESSCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred EEEEcCccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEeecc
Confidence 9998764432 22 24789999987766 4467788999999999999999998643
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-14 Score=132.26 Aligned_cols=134 Identities=12% Similarity=0.037 Sum_probs=98.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeC-CHHHHHHHHHHH-----HHcCCC----CCeEEEEccCCCCC--C----
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITL-SPVQAQRANALA-----AARGLA----DKVSFQVGDALQQP--F---- 222 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~-s~~~~~~a~~~~-----~~~~~~----~~i~~~~~d~~~~~--~---- 222 (379)
+.+|||+|||+|.++..+++....+|+|+|+ |+.+++.|++++ +..++. +++.+...|..+.. +
T Consensus 80 ~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 159 (281)
T 3bzb_A 80 GKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCT 159 (281)
T ss_dssp TCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHH
T ss_pred CCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhc
Confidence 7899999999999999988863339999999 899999999998 555543 46888876654421 1
Q ss_pred CCCcccEEEeccccCCCCCHHHHHHHHHHhcC---C--CCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016981 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTA---P--AGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (379)
Q Consensus 223 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~Lk---p--gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (379)
++++||+|++..+++|.++...+++.+.++|| | ||.+++....... .+ ..
T Consensus 160 ~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~--------------~~-----------~~ 214 (281)
T 3bzb_A 160 GLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRP--------------HL-----------AE 214 (281)
T ss_dssp SCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------------------------------
T ss_pred cCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeec--------------cc-----------ch
Confidence 35789999999999999999999999999999 9 9988775321100 00 00
Q ss_pred CHHHHHHHHHhCC-CceeEEE
Q 016981 298 STADYVKLLQSLS-LEDIKAE 317 (379)
Q Consensus 298 ~~~~~~~~l~~aG-F~~v~~~ 317 (379)
...++.+.++++| |++..+.
T Consensus 215 ~~~~~~~~l~~~G~f~v~~~~ 235 (281)
T 3bzb_A 215 RDLAFFRLVNADGALIAEPWL 235 (281)
T ss_dssp -CTHHHHHHHHSTTEEEEEEE
T ss_pred hHHHHHHHHHhcCCEEEEEec
Confidence 1245667889999 9987764
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.4e-15 Score=130.95 Aligned_cols=100 Identities=14% Similarity=0.163 Sum_probs=82.9
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC---CCCCCCcccEEEe
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ---QPFPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~~fD~V~~ 232 (379)
++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.+.++++.. .++.+..+|+.+ +++.+++||+|++
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~~D~V~~ 153 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIAMVDVIFA 153 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCCCEEEEEE
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCCcEEEEEE
Confidence 48899999999999999999986 379999999999988888877664 589999999987 3445689999998
Q ss_pred ccccCCCCCH-HHHHHHHHHhcCCCCEEEEEe
Q 016981 233 MESGEHMPDK-SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 233 ~~~l~~~~~~-~~~l~~~~r~LkpgG~l~i~~ 263 (379)
... .++. ..++.++.++|||||++++..
T Consensus 154 ~~~---~~~~~~~~~~~~~~~LkpgG~l~i~~ 182 (233)
T 2ipx_A 154 DVA---QPDQTRIVALNAHTFLRNGGHFVISI 182 (233)
T ss_dssp CCC---CTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCC---CccHHHHHHHHHHHHcCCCeEEEEEE
Confidence 544 2333 556889999999999999954
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-14 Score=129.25 Aligned_cols=109 Identities=15% Similarity=0.147 Sum_probs=92.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
.+..+++.+...+ +.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...+ ++.+..+|+.+.
T Consensus 58 ~~~~~~~~~~~~~-----~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~ 128 (231)
T 1vbf_A 58 LGIFMLDELDLHK-----GQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLG 128 (231)
T ss_dssp HHHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGC
T ss_pred HHHHHHHhcCCCC-----CCEEEEEcCCCCHHHHHHHHH-cCEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcccc
Confidence 4556666665544 889999999999999999998 5899999999999999999986554 799999999874
Q ss_pred CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
...+++||+|++..+++|+. .++.++|||||++++...
T Consensus 129 ~~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 129 YEEEKPYDRVVVWATAPTLL------CKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp CGGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEEC
T ss_pred cccCCCccEEEECCcHHHHH------HHHHHHcCCCcEEEEEEc
Confidence 33467899999999999985 468999999999999864
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.7e-16 Score=140.51 Aligned_cols=137 Identities=26% Similarity=0.307 Sum_probs=110.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...++.+++.++++|+.+.+ ++++||+|++...+++
T Consensus 79 ~~~vLD~gcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~ 156 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFALT-GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWGG 156 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCSS
T ss_pred CCEEEECccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcCC
Confidence 789999999999999999987 68999999999999999999999887668999999998876 5689999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHh--hccCCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC--DAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
..+....+.+++++|+|||.+++... .... .....+...+.+++..++...|...+..
T Consensus 157 ~~~~~~~~~~~~~~L~pgG~~i~~~~--------------------~~~~~~~~~~lp~~~~~~~~~~~l~~~g~~~i~~ 216 (241)
T 3gdh_A 157 PDYATAETFDIRTMMSPDGFEIFRLS--------------------KKITNNIVYFLPRNADIDQVASLAGPGGQVEIEQ 216 (241)
T ss_dssp GGGGGSSSBCTTTSCSSCHHHHHHHH--------------------HHHCSCEEEEEETTBCHHHHHHTTCTTCCEEEEE
T ss_pred cchhhhHHHHHHhhcCCcceeHHHHH--------------------HhhCCceEEECCCCCCHHHHHHHhccCCCEEEEe
Confidence 88777788889999999999655321 1111 1122334457788888888888766554
Q ss_pred E
Q 016981 317 E 317 (379)
Q Consensus 317 ~ 317 (379)
.
T Consensus 217 ~ 217 (241)
T 3gdh_A 217 N 217 (241)
T ss_dssp E
T ss_pred h
Confidence 4
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.8e-15 Score=128.59 Aligned_cols=125 Identities=15% Similarity=0.075 Sum_probs=102.9
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-CCCCCCcccEEEeccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPFPDGQFDLVWSMES 235 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~V~~~~~ 235 (379)
++.+|||||||+|.++..+++.. ..+|+++|+++.+++.|+++++.+++.+++.+..+|..+ ++. .+.||+|+..++
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-~~~~D~IviaG~ 93 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE-TDQVSVITIAGM 93 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-GGCCCEEEEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc-CcCCCEEEEcCC
Confidence 37899999999999999999975 458999999999999999999999998789999999854 332 236999987654
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeE
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 315 (379)
-.. -...++.+....|+|+|++++.... ..+.++++|.+.||.+++
T Consensus 94 Gg~--~i~~Il~~~~~~L~~~~~lVlq~~~--------------------------------~~~~vr~~L~~~Gf~i~~ 139 (225)
T 3kr9_A 94 GGR--LIARILEEGLGKLANVERLILQPNN--------------------------------REDDLRIWLQDHGFQIVA 139 (225)
T ss_dssp CHH--HHHHHHHHTGGGCTTCCEEEEEESS--------------------------------CHHHHHHHHHHTTEEEEE
T ss_pred ChH--HHHHHHHHHHHHhCCCCEEEEECCC--------------------------------CHHHHHHHHHHCCCEEEE
Confidence 321 1378899999999999999986521 366789999999999887
Q ss_pred EE
Q 016981 316 AE 317 (379)
Q Consensus 316 ~~ 317 (379)
..
T Consensus 140 e~ 141 (225)
T 3kr9_A 140 ES 141 (225)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.6e-15 Score=130.30 Aligned_cols=126 Identities=12% Similarity=0.064 Sum_probs=104.1
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
++.+|||||||+|.++..+++.. ..+|+++|+++.+++.|+++++.+++.+++.+..+|..+...++.+||+|++.++.
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~IviagmG 100 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMG 100 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC
T ss_pred CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCCc
Confidence 37899999999999999999975 45899999999999999999999999778999999988765443469999875543
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
.. -...++.+..+.|+++|+|+++... ..+.++++|.+.||.+++.
T Consensus 101 g~--lI~~IL~~~~~~L~~~~~lIlq~~~--------------------------------~~~~lr~~L~~~Gf~i~~E 146 (244)
T 3gnl_A 101 GT--LIRTILEEGAAKLAGVTKLILQPNI--------------------------------AAWQLREWSEQNNWLITSE 146 (244)
T ss_dssp HH--HHHHHHHHTGGGGTTCCEEEEEESS--------------------------------CHHHHHHHHHHHTEEEEEE
T ss_pred hH--HHHHHHHHHHHHhCCCCEEEEEcCC--------------------------------ChHHHHHHHHHCCCEEEEE
Confidence 31 2367899999999999999997621 3667899999999998665
Q ss_pred E
Q 016981 317 E 317 (379)
Q Consensus 317 ~ 317 (379)
.
T Consensus 147 ~ 147 (244)
T 3gnl_A 147 A 147 (244)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.3e-15 Score=137.40 Aligned_cols=138 Identities=16% Similarity=0.221 Sum_probs=102.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHH---cCCCCCeEEEEccCCCCCC--CCCcccEEEe
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAA---RGLADKVSFQVGDALQQPF--PDGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~i~~~~~d~~~~~~--~~~~fD~V~~ 232 (379)
+.+|||||||+|.++..+++.. ..+|+++|+|+.+++.|++++.. ....++++++.+|+.+.+. ++++||+|++
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~ 175 (304)
T 3bwc_A 96 PERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVII 175 (304)
T ss_dssp CCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEEE
T ss_pred CCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEEE
Confidence 7899999999999999999865 56999999999999999998742 1223589999999877543 4688999999
Q ss_pred ccccCCCCCH----HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHh
Q 016981 233 MESGEHMPDK----SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQS 308 (379)
Q Consensus 233 ~~~l~~~~~~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (379)
.....+.+.. .+++++++++|||||++++...... +. .....++.+.|++
T Consensus 176 d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~--------~~------------------~~~~~~~~~~l~~ 229 (304)
T 3bwc_A 176 DTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIW--------LD------------------LELIEKMSRFIRE 229 (304)
T ss_dssp ECC---------CCHHHHHHHHHHEEEEEEEEEEECCTT--------TC------------------HHHHHHHHHHHHH
T ss_pred CCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcc--------cc------------------hHHHHHHHHHHHh
Confidence 7655443322 6899999999999999998752210 00 0035578889999
Q ss_pred CCCceeEEEecCCC
Q 016981 309 LSLEDIKAEDWSQN 322 (379)
Q Consensus 309 aGF~~v~~~~~~~~ 322 (379)
+||..+.......+
T Consensus 230 ~GF~~v~~~~~~vP 243 (304)
T 3bwc_A 230 TGFASVQYALMHVP 243 (304)
T ss_dssp HTCSEEEEEECCCT
T ss_pred CCCCcEEEEEeecc
Confidence 99998877654444
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.6e-15 Score=133.96 Aligned_cols=150 Identities=11% Similarity=0.076 Sum_probs=102.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE-EccCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQ-VGDALQ 219 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~-~~d~~~ 219 (379)
.+...++.+++.. ++.+|||+|||||.++..+++....+|+|+|+|+.|++.+.++. +++... ..|+..
T Consensus 72 Kl~~~l~~~~~~~----~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~------~rv~~~~~~ni~~ 141 (291)
T 3hp7_A 72 KLEKALAVFNLSV----EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD------DRVRSMEQYNFRY 141 (291)
T ss_dssp HHHHHHHHTTCCC----TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC------TTEEEECSCCGGG
T ss_pred HHHHHHHhcCCCc----cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cccceecccCcee
Confidence 5566677666543 47899999999999999999874459999999999999854421 233322 334443
Q ss_pred CC---CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccc-------hHHHHHHHHHhh
Q 016981 220 QP---FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQ-------PWEQELLKKICD 289 (379)
Q Consensus 220 ~~---~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 289 (379)
++ ++..+||+|++..+++++ ..+|.+++++|||||++++.. .++......... +..+
T Consensus 142 l~~~~l~~~~fD~v~~d~sf~sl---~~vL~e~~rvLkpGG~lv~lv--kPqfe~~~~~~~~~G~vrd~~~~-------- 208 (291)
T 3hp7_A 142 AEPVDFTEGLPSFASIDVSFISL---NLILPALAKILVDGGQVVALV--KPQFEAGREQIGKNGIVRESSIH-------- 208 (291)
T ss_dssp CCGGGCTTCCCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEE--CGGGTSCGGGCC-CCCCCCHHHH--------
T ss_pred cchhhCCCCCCCEEEEEeeHhhH---HHHHHHHHHHcCcCCEEEEEE--CcccccChhhcCCCCccCCHHHH--------
Confidence 32 344569999998887765 789999999999999999873 111100000000 0000
Q ss_pred ccCCCCCCCHHHHHHHHHhCCCceeEEEec
Q 016981 290 AYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319 (379)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 319 (379)
....+++.++++++||.+..+...
T Consensus 209 ------~~~~~~v~~~~~~~Gf~v~~~~~s 232 (291)
T 3hp7_A 209 ------EKVLETVTAFAVDYGFSVKGLDFS 232 (291)
T ss_dssp ------HHHHHHHHHHHHHTTEEEEEEEEC
T ss_pred ------HHHHHHHHHHHHHCCCEEEEEEEC
Confidence 125778999999999998877643
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=137.24 Aligned_cols=102 Identities=25% Similarity=0.322 Sum_probs=90.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++++..++.+++.++.+|+.+++++ ++||+|++..+++|
T Consensus 51 ~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~ 128 (348)
T 2y1w_A 51 DKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYM 128 (348)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCCBTT
T ss_pred cCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCchhc
Confidence 789999999999999999987445999999996 8899999999988878999999999988765 68999999988888
Q ss_pred CC--CHHHHHHHHHHhcCCCCEEEEE
Q 016981 239 MP--DKSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 239 ~~--~~~~~l~~~~r~LkpgG~l~i~ 262 (379)
+. +....+.++.++|||||.+++.
T Consensus 129 ~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 129 LFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp BTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred CChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 74 4468888999999999999864
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-14 Score=126.23 Aligned_cols=104 Identities=20% Similarity=0.299 Sum_probs=88.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C-CC---CCcccEEE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-FP---DGQFDLVW 231 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~---~~~fD~V~ 231 (379)
+.+|||+|||+|..+..+++.+ +.+|+++|+++.+++.|++++...++.+++.+..+|+.+. + ++ .++||+|+
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~ 138 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIF 138 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEE
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEE
Confidence 7899999999999999999986 5799999999999999999999988877899999998653 1 11 26799999
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+... ..+...+++++.++|||||++++.+..
T Consensus 139 ~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 139 IDAD---KQNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp ECSC---GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred EcCC---cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 8655 234578999999999999998887644
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-15 Score=135.52 Aligned_cols=104 Identities=17% Similarity=0.240 Sum_probs=85.0
Q ss_pred CCEEEEeCCcccH----HHHHHHHHcC-----CEEEEEeCCHHHHHHHHHHHHH-----------------------cC-
Q 016981 159 PKNVVDVGCGIGG----SSRYLAKKFG-----AKCQGITLSPVQAQRANALAAA-----------------------RG- 205 (379)
Q Consensus 159 ~~~vLDiGcGtG~----~~~~l~~~~~-----~~v~gvD~s~~~~~~a~~~~~~-----------------------~~- 205 (379)
+.+|||+|||||. +++.+++..+ .+|+|+|+|+.|++.|++.... .+
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 6799999999998 6666776533 4899999999999999986310 00
Q ss_pred ------CCCCeEEEEccCCCCCCC-CCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEE
Q 016981 206 ------LADKVSFQVGDALQQPFP-DGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 206 ------~~~~i~~~~~d~~~~~~~-~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~ 262 (379)
+..++.|.+.|+.+.|++ .++||+|+|.+++.|+++. .+++++++++|||||+|++.
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 013699999999886665 5789999999999999765 79999999999999999883
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-14 Score=128.56 Aligned_cols=104 Identities=22% Similarity=0.316 Sum_probs=91.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CCC--CCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFP--DGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~--~~~fD~V~~~~ 234 (379)
+.+|||+|||+|..+..+++.. +.+|+++|+++.+++.|++++...++.+++.+..+|+.+. +.. +++||+|++..
T Consensus 55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 134 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDA 134 (233)
T ss_dssp CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEG
T ss_pred CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECC
Confidence 7899999999999999999987 6899999999999999999999988877899999998774 332 57899999876
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
... +...+++++.++|||||++++.++.
T Consensus 135 ~~~---~~~~~l~~~~~~L~pgG~lv~~~~~ 162 (233)
T 2gpy_A 135 AKG---QYRRFFDMYSPMVRPGGLILSDNVL 162 (233)
T ss_dssp GGS---CHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred CHH---HHHHHHHHHHHHcCCCeEEEEEcCC
Confidence 643 6789999999999999999997654
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-15 Score=149.61 Aligned_cols=105 Identities=29% Similarity=0.357 Sum_probs=91.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC--CCCCCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~~~~l 236 (379)
+.+|||||||+|.++..|+++ |++|+|||+|+.+++.|+.++...+. .+++|.+++++++ ++.+++||+|+|..++
T Consensus 67 ~~~vLDvGCG~G~~~~~la~~-ga~V~giD~~~~~i~~a~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ 144 (569)
T 4azs_A 67 PLNVLDLGCAQGFFSLSLASK-GATIVGIDFQQENINVCRALAEENPD-FAAEFRVGRIEEVIAALEEGEFDLAIGLSVF 144 (569)
T ss_dssp CCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTSTT-SEEEEEECCHHHHHHHCCTTSCSEEEEESCH
T ss_pred CCeEEEECCCCcHHHHHHHhC-CCEEEEECCCHHHHHHHHHHHHhcCC-CceEEEECCHHHHhhhccCCCccEEEECcch
Confidence 789999999999999999997 89999999999999999999987763 3799999999887 4567899999999999
Q ss_pred CCCCCHH--HHHHHHHHhcCCCCEEEEEecc
Q 016981 237 EHMPDKS--KFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 237 ~~~~~~~--~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+|++|+. ..+..+.+.|+++|..++..+.
T Consensus 145 ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~ 175 (569)
T 4azs_A 145 HHIVHLHGIDEVKRLLSRLADVTQAVILELA 175 (569)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHSSEEEEECC
T ss_pred hcCCCHHHHHHHHHHHHHhccccceeeEEec
Confidence 9998874 3355678889999887777653
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.2e-15 Score=132.97 Aligned_cols=107 Identities=16% Similarity=0.214 Sum_probs=91.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CCC-----CCcccEE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFP-----DGQFDLV 230 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~-----~~~fD~V 230 (379)
+.+|||+|||+|..+..+++.. +++|+++|+++.+++.|+++++..++.++++++.+|+.+. +.. +++||+|
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V 140 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI 140 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence 7899999999999999999875 5799999999999999999999999878999999998764 211 4789999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCC
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 268 (379)
++... ..+...+++++.++|||||++++.+.....
T Consensus 141 ~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g 175 (242)
T 3r3h_A 141 FIDAD---KTNYLNYYELALKLVTPKGLIAIDNIFWDG 175 (242)
T ss_dssp EEESC---GGGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred EEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence 98654 345678999999999999999998765433
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.57 E-value=8.8e-14 Score=122.85 Aligned_cols=136 Identities=15% Similarity=0.170 Sum_probs=94.8
Q ss_pred CCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC---CCCCcccEEE
Q 016981 157 KRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVW 231 (379)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V~ 231 (379)
.++.+|||+|||+|.++..+++.. .++|+|+|+|+.|++...+..+.. .|+.++++|+.... ...++||+|+
T Consensus 75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~~~~~~~~D~I~ 151 (232)
T 3id6_C 75 RKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSYKSVVENVDVLY 151 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGTTTTCCCEEEEE
T ss_pred CCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhhhccccceEEEE
Confidence 359999999999999999999875 469999999999976655554443 48999999987642 1246899999
Q ss_pred eccccCCCCCHHHHH-HHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCC
Q 016981 232 SMESGEHMPDKSKFV-SELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLS 310 (379)
Q Consensus 232 ~~~~l~~~~~~~~~l-~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 310 (379)
+.... ++....+ ..+.+.|||||+|+++..... ... . ...--..++..+.|+++|
T Consensus 152 ~d~a~---~~~~~il~~~~~~~LkpGG~lvisik~~~----------------~d~---t--~~~~e~~~~~~~~L~~~g 207 (232)
T 3id6_C 152 VDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVIKARS----------------IDV---T--KDPKEIYKTEVEKLENSN 207 (232)
T ss_dssp ECCCC---TTHHHHHHHHHHHHEEEEEEEEEEEC----------------------------CCSSSSTTHHHHHHHHTT
T ss_pred ecCCC---hhHHHHHHHHHHHhCCCCeEEEEEEccCC----------------ccc---C--CCHHHHHHHHHHHHHHCC
Confidence 87543 5555555 456669999999999842110 000 0 000001234567888999
Q ss_pred CceeEEEec
Q 016981 311 LEDIKAEDW 319 (379)
Q Consensus 311 F~~v~~~~~ 319 (379)
|+.++..+.
T Consensus 208 f~~~~~~~l 216 (232)
T 3id6_C 208 FETIQIINL 216 (232)
T ss_dssp EEEEEEEEC
T ss_pred CEEEEEecc
Confidence 999987654
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=136.66 Aligned_cols=104 Identities=20% Similarity=0.220 Sum_probs=88.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCC--CeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLAD--KVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~--~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
+.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++..+++.. +++|..+|+.+ ++++++||+|+++..
T Consensus 223 ~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~npp 301 (375)
T 4dcm_A 223 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP 301 (375)
T ss_dssp CSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEECCC
T ss_pred CCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEECCC
Confidence 6899999999999999999987 7899999999999999999999887643 58889999887 456789999999988
Q ss_pred cCCCCC-----HHHHHHHHHHhcCCCCEEEEEe
Q 016981 236 GEHMPD-----KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 l~~~~~-----~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+++... ..++++++.++|||||+++++.
T Consensus 302 fh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 302 FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp C-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 875322 2478999999999999999976
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-14 Score=125.98 Aligned_cols=101 Identities=19% Similarity=0.235 Sum_probs=87.2
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEEccCCCCCCCCCcccEEE
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGL----ADKVSFQVGDALQQPFPDGQFDLVW 231 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~fD~V~ 231 (379)
++.+|||+|||+|..+..+++..+ .+|+|+|+|+.+++.+++++...+. ..++.+..+|+...+..+++||+|+
T Consensus 77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~ 156 (226)
T 1i1n_A 77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIH 156 (226)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEEE
Confidence 488999999999999999998763 6999999999999999999887653 3589999999887655567899999
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+...++++ ++++.++|||||++++...
T Consensus 157 ~~~~~~~~------~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 157 VGAAAPVV------PQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp ECSBBSSC------CHHHHHTEEEEEEEEEEES
T ss_pred ECCchHHH------HHHHHHhcCCCcEEEEEEe
Confidence 99888776 4688999999999999764
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-14 Score=131.21 Aligned_cols=105 Identities=14% Similarity=0.207 Sum_probs=88.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHH---cCCCCCeEEEEccCCCC-------CCCCCcc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAA---RGLADKVSFQVGDALQQ-------PFPDGQF 227 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~i~~~~~d~~~~-------~~~~~~f 227 (379)
+.+|||+|||+|.++..++++. +.+|+|+|+++.+++.|++++.. .++.+++.++++|+.+. ++++++|
T Consensus 37 ~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~f 116 (260)
T 2ozv_A 37 ACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHF 116 (260)
T ss_dssp CEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTCE
T ss_pred CCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCCc
Confidence 7899999999999999999987 57999999999999999999887 77766799999999886 2567899
Q ss_pred cEEEeccccCCC------------------CCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 228 DLVWSMESGEHM------------------PDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 228 D~V~~~~~l~~~------------------~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|+|+++-.+... .+...+++.+.++|||||++++..
T Consensus 117 D~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 117 HHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp EEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 999997333221 235789999999999999998864
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-14 Score=125.45 Aligned_cols=103 Identities=23% Similarity=0.326 Sum_probs=88.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CCCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~V~~~~~ 235 (379)
+.+|||+|||+|..+..+++.. +.+|+++|+|+.+++.|+++++..++.+++++..+|+.+. +..++ ||+|++...
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~ 135 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDCD 135 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEETT
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcCC
Confidence 7899999999999999999876 5799999999999999999998888766899999998764 44456 999998732
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
..+...+++++.++|||||.+++.+..
T Consensus 136 ---~~~~~~~l~~~~~~LkpgG~lv~~~~~ 162 (210)
T 3c3p_A 136 ---VFNGADVLERMNRCLAKNALLIAVNAL 162 (210)
T ss_dssp ---TSCHHHHHHHHGGGEEEEEEEEEESSS
T ss_pred ---hhhhHHHHHHHHHhcCCCeEEEEECcc
Confidence 456789999999999999999987643
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.4e-14 Score=125.37 Aligned_cols=110 Identities=13% Similarity=0.141 Sum_probs=94.7
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC
Q 016981 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 222 (379)
..++..+.+.+ +.+|||+|||+|.++..+++. +.+|+++|+++.+++.|+++....++.+++.+...|+.+...
T Consensus 81 ~~~~~~~~~~~-----~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 154 (248)
T 2yvl_A 81 FYIALKLNLNK-----EKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV 154 (248)
T ss_dssp HHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC
T ss_pred HHHHHhcCCCC-----CCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc
Confidence 34555555544 889999999999999999998 889999999999999999999988876789999999887543
Q ss_pred CCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 223 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+++.||+|++ +.+++..+++++.++|||||++++..
T Consensus 155 ~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~ 190 (248)
T 2yvl_A 155 PEGIFHAAFV-----DVREPWHYLEKVHKSLMEGAPVGFLL 190 (248)
T ss_dssp CTTCBSEEEE-----CSSCGGGGHHHHHHHBCTTCEEEEEE
T ss_pred CCCcccEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEe
Confidence 5678999997 45677899999999999999999987
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.4e-14 Score=131.98 Aligned_cols=131 Identities=15% Similarity=0.156 Sum_probs=101.3
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEec--
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-- 233 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~-- 233 (379)
++.+|||+|||+|..+..+++.. +.+|+|+|+|+.+++.++++++..++. ++.+.++|+.+++..+++||+|++.
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~~~~~fD~Il~d~P 196 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGELNVEFDKILLDAP 196 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGGGCCCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhcccccccCCEEEEeCC
Confidence 38899999999999999999876 379999999999999999999998874 7999999998876446789999973
Q ss_pred ----cccCCCCCH----------------HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCC
Q 016981 234 ----ESGEHMPDK----------------SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYL 293 (379)
Q Consensus 234 ----~~l~~~~~~----------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (379)
.++.+.++. ..+|+++.++|||||++++++.....
T Consensus 197 csg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~------------------------- 251 (315)
T 1ixk_A 197 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP------------------------- 251 (315)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG-------------------------
T ss_pred CCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCh-------------------------
Confidence 233333321 48899999999999999998743211
Q ss_pred CCCCCHHHHHHHHHhCCCceeEE
Q 016981 294 PAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 294 ~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
--..+.+...|++.||+.+.+
T Consensus 252 --~Ene~~v~~~l~~~~~~~~~~ 272 (315)
T 1ixk_A 252 --EENEFVIQWALDNFDVELLPL 272 (315)
T ss_dssp --GGTHHHHHHHHHHSSEEEECC
T ss_pred --HHhHHHHHHHHhcCCCEEecC
Confidence 003445667788888876654
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.56 E-value=9.9e-15 Score=131.17 Aligned_cols=120 Identities=15% Similarity=0.130 Sum_probs=91.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHH--c-CCEEEEEeCCHHHHHHHHHHHHHc---CCCCC----
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKK--F-GAKCQGITLSPVQAQRANALAAAR---GLADK---- 209 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~--~-~~~v~gvD~s~~~~~~a~~~~~~~---~~~~~---- 209 (379)
.++..+++.+... ++.+|||+|||+|.++..+++. . +.+|+|+|+|+.+++.|++++... ++..+
T Consensus 38 ~l~~~~l~~~~~~-----~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~ 112 (250)
T 1o9g_A 38 EIFQRALARLPGD-----GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELER 112 (250)
T ss_dssp HHHHHHHHTSSCC-----SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHhcccC-----CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhh
Confidence 4556666654322 3689999999999999999987 4 568999999999999999887654 33212
Q ss_pred ---------------------eE-------------EEEccCCCCCC-----CCCcccEEEeccccCCCCC---------
Q 016981 210 ---------------------VS-------------FQVGDALQQPF-----PDGQFDLVWSMESGEHMPD--------- 241 (379)
Q Consensus 210 ---------------------i~-------------~~~~d~~~~~~-----~~~~fD~V~~~~~l~~~~~--------- 241 (379)
+. |.++|+.+... ..++||+|+++..+.+..+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~ 192 (250)
T 1o9g_A 113 REQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQP 192 (250)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHH
T ss_pred hhhhhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccH
Confidence 56 99999877421 3458999999876655433
Q ss_pred HHHHHHHHHHhcCCCCEEEEEec
Q 016981 242 KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 242 ~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
...+++++.++|||||+++++..
T Consensus 193 ~~~~l~~~~~~LkpgG~l~~~~~ 215 (250)
T 1o9g_A 193 VAGLLRSLASALPAHAVIAVTDR 215 (250)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEES
T ss_pred HHHHHHHHHHhcCCCcEEEEeCc
Confidence 35899999999999999999553
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-14 Score=127.28 Aligned_cols=111 Identities=21% Similarity=0.334 Sum_probs=91.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
....+++.+...+ +.+|||+|||+|.++..+++..+.+|+++|+++.+++.|++++...++. ++.+..+|+ ..
T Consensus 79 ~~~~~~~~l~~~~-----~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~-~~ 151 (235)
T 1jg1_A 79 MVAIMLEIANLKP-----GMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDG-SK 151 (235)
T ss_dssp HHHHHHHHHTCCT-----TCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCG-GG
T ss_pred HHHHHHHhcCCCC-----CCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEECCc-cc
Confidence 3445555555544 8899999999999999999986579999999999999999999988774 699999997 33
Q ss_pred CCCC-CcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 221 PFPD-GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 221 ~~~~-~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
++++ .+||+|++..+++++. .++.++|||||++++...
T Consensus 152 ~~~~~~~fD~Ii~~~~~~~~~------~~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 152 GFPPKAPYDVIIVTAGAPKIP------EPLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp CCGGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCCccEEEECCcHHHHH------HHHHHhcCCCcEEEEEEe
Confidence 4444 3599999999999885 378899999999999774
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.55 E-value=7.2e-14 Score=123.53 Aligned_cols=99 Identities=17% Similarity=0.232 Sum_probs=81.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC---CCCCcccEEEe
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V~~ 232 (379)
++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.++++++.. +++.+..+|+.+.. ...++||+|++
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~D~v~~ 149 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVPKVDVIFE 149 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcccCCceEEEE
Confidence 48899999999999999999885 379999999999999999887653 58999999998732 12468999997
Q ss_pred ccccCCCCCHH-HHHHHHHHhcCCCCEEEEE
Q 016981 233 MESGEHMPDKS-KFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 233 ~~~l~~~~~~~-~~l~~~~r~LkpgG~l~i~ 262 (379)
... .++.. .++.++.++|||||++++.
T Consensus 150 ~~~---~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 150 DVA---QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp CCC---STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCC---CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 644 23443 4599999999999999998
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-15 Score=133.62 Aligned_cols=153 Identities=11% Similarity=0.050 Sum_probs=94.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE-EccCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQ-VGDALQ 219 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~-~~d~~~ 219 (379)
.+.+.++.++... ++.+|||||||||.++..+++....+|+|+|+|+.|++.|+++.. ++... ..++..
T Consensus 24 kL~~~L~~~~~~~----~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~------~~~~~~~~~~~~ 93 (232)
T 3opn_A 24 KLEKALKEFHLEI----NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDE------RVVVMEQFNFRN 93 (232)
T ss_dssp HHHHHHHHTTCCC----TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCT------TEEEECSCCGGG
T ss_pred HHHHHHHHcCCCC----CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCc------cccccccceEEE
Confidence 4566666665443 467999999999999999998732599999999999998776432 22211 111111
Q ss_pred C---CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCC-C-
Q 016981 220 Q---PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYL-P- 294 (379)
Q Consensus 220 ~---~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 294 (379)
. .++...||.+.+..++.++ ..++++++++|||||++++.. .+. .... .......... .
T Consensus 94 ~~~~~~~~~~~d~~~~D~v~~~l---~~~l~~i~rvLkpgG~lv~~~--~p~----~e~~-------~~~~~~~G~~~d~ 157 (232)
T 3opn_A 94 AVLADFEQGRPSFTSIDVSFISL---DLILPPLYEILEKNGEVAALI--KPQ----FEAG-------REQVGKNGIIRDP 157 (232)
T ss_dssp CCGGGCCSCCCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEE--CHH----HHSC-------HHHHC-CCCCCCH
T ss_pred eCHhHcCcCCCCEEEEEEEhhhH---HHHHHHHHHhccCCCEEEEEE--Ccc----cccC-------HHHhCcCCeecCc
Confidence 1 1111224555544444444 779999999999999999863 110 0000 0000000000 0
Q ss_pred --CCCCHHHHHHHHHhCCCceeEEEec
Q 016981 295 --AWCSTADYVKLLQSLSLEDIKAEDW 319 (379)
Q Consensus 295 --~~~~~~~~~~~l~~aGF~~v~~~~~ 319 (379)
...+.+++.++++++||+++.+...
T Consensus 158 ~~~~~~~~~l~~~l~~aGf~v~~~~~~ 184 (232)
T 3opn_A 158 KVHQMTIEKVLKTATQLGFSVKGLTFS 184 (232)
T ss_dssp HHHHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred chhHHHHHHHHHHHHHCCCEEEEEEEc
Confidence 0126788999999999998887643
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.54 E-value=6.9e-15 Score=123.81 Aligned_cols=103 Identities=14% Similarity=0.094 Sum_probs=86.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C-CC--CCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-FP--DGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~--~~~fD~V~~~~ 234 (379)
+.+|||+|||+|.++..+++. +..|+|+|+|+.+++.|++++...++ ++.+..+|+.+. + .+ .++||+|++..
T Consensus 42 ~~~vLD~GcG~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 42 RGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp CCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEeCCCcCHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 789999999999999999987 56799999999999999999988776 799999998763 2 11 24799999987
Q ss_pred ccCCCCCHHHHHHHHH--HhcCCCCEEEEEeccC
Q 016981 235 SGEHMPDKSKFVSELA--RVTAPAGTIIIVTWCH 266 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~--r~LkpgG~l~i~~~~~ 266 (379)
.++ .+...+++.+. ++|||||.+++.....
T Consensus 119 ~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 119 PYA--MDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred CCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 765 55567777777 9999999999987543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-14 Score=126.72 Aligned_cols=105 Identities=17% Similarity=0.232 Sum_probs=89.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C-CCC----CcccEE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-FPD----GQFDLV 230 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~~----~~fD~V 230 (379)
+.+|||+|||+|..+..+++.+ +.+|+++|+++.+++.|+++++..++.+++.+.++|+.+. + +.. ++||+|
T Consensus 65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v 144 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI 144 (225)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence 7899999999999999999875 5799999999999999999999998877899999998653 2 111 789999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccC
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 266 (379)
++... ..+...+++++.++|||||++++.+...
T Consensus 145 ~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 177 (225)
T 3tr6_A 145 YIDAD---KANTDLYYEESLKLLREGGLIAVDNVLR 177 (225)
T ss_dssp EECSC---GGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred EECCC---HHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 96543 3456889999999999999999987543
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.54 E-value=5e-14 Score=126.29 Aligned_cols=105 Identities=23% Similarity=0.429 Sum_probs=85.4
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc--------CCCCCeEEEEccCCC-CC--CCCC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR--------GLADKVSFQVGDALQ-QP--FPDG 225 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--------~~~~~i~~~~~d~~~-~~--~~~~ 225 (379)
++.+|||||||+|.++..+++.. +..|+|+|+|+.+++.|++++... ++ .++.++.+|+.+ ++ ++++
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGTSCTT
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHhcccc
Confidence 37899999999999999999987 569999999999999999988765 65 589999999987 55 6678
Q ss_pred cccEEEeccccCCCCCH--------HHHHHHHHHhcCCCCEEEEEe
Q 016981 226 QFDLVWSMESGEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 226 ~fD~V~~~~~l~~~~~~--------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
++|.|+....-.+.... ..+++++.++|||||.|++..
T Consensus 128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 99999854321111100 489999999999999999964
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-13 Score=129.83 Aligned_cols=117 Identities=20% Similarity=0.164 Sum_probs=96.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
+...++..++..+ +.+|||+|||+|.++..++... ..+++|+|+|+.+++.|+++++..++. ++.+.++|+.
T Consensus 191 la~~l~~~~~~~~-----~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~ 264 (354)
T 3tma_A 191 LAQALLRLADARP-----GMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADAR 264 (354)
T ss_dssp HHHHHHHHTTCCT-----TCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGG
T ss_pred HHHHHHHHhCCCC-----CCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChh
Confidence 3444555555544 7899999999999999999875 379999999999999999999999986 8999999999
Q ss_pred CCCCCCCcccEEEeccccCCCCC--------HHHHHHHHHHhcCCCCEEEEEe
Q 016981 219 QQPFPDGQFDLVWSMESGEHMPD--------KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~--------~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+++.+.+.||+|+++-....... ...+++++.++|||||.+++..
T Consensus 265 ~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 265 HLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317 (354)
T ss_dssp GGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred hCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 98776778999999755433211 2678999999999999999976
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.2e-14 Score=126.84 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=89.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C-C-----CCCcccE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-F-----PDGQFDL 229 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~-----~~~~fD~ 229 (379)
+.+|||||||+|..+..+++.+ +.+|+++|+|+.+++.|+++++..++.++++++.+|+.+. + + ++++||+
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~ 159 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF 159 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSE
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEE
Confidence 7899999999999999999986 5799999999999999999999988877899999998663 3 2 1578999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|++... ..+...+++++.++|||||.+++.+.
T Consensus 160 V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~ 191 (247)
T 1sui_A 160 IFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_dssp EEECSC---STTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred EEEcCc---hHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 998644 34668999999999999999998764
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.2e-14 Score=124.42 Aligned_cols=101 Identities=19% Similarity=0.135 Sum_probs=87.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEEccCCCCC----CC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFG------AKCQGITLSPVQAQRANALAAARGL----ADKVSFQVGDALQQP----FP 223 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~------~~v~gvD~s~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~----~~ 223 (379)
++.+|||+|||+|.++..+++..+ .+|+|+|+++.+++.|++++...++ ..++.+..+|+.+.. ..
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 159 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE 159 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence 378999999999999999998754 4999999999999999999988763 358999999998754 45
Q ss_pred CCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 224 DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 224 ~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.++||+|++...++++ ++++.++|||||++++...
T Consensus 160 ~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 160 LGLFDAIHVGASASEL------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEEE
T ss_pred CCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEc
Confidence 6789999999998876 4788999999999999764
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.6e-14 Score=139.92 Aligned_cols=115 Identities=23% Similarity=0.287 Sum_probs=94.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
..+.+++.+... ++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++++..++.+++.++.+|+.++
T Consensus 146 ~~~~il~~l~~~-----~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~ 219 (480)
T 3b3j_A 146 YQRAILQNHTDF-----KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV 219 (480)
T ss_dssp HHHHHHHTGGGT-----TTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred HHHHHHHhhhhc-----CCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhC
Confidence 344455554333 3789999999999999999886456999999998 9999999999999878999999999987
Q ss_pred CCCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEE
Q 016981 221 PFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~ 262 (379)
+++ ++||+|++..+++|+.+. ...+.++.++|||||.+++.
T Consensus 220 ~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 220 SLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp CCS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred ccC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 664 689999998877777543 66788899999999999853
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.2e-14 Score=131.88 Aligned_cols=101 Identities=24% Similarity=0.229 Sum_probs=87.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecc---c
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME---S 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~---~ 235 (379)
+++|||||||+|.++..+++....+|+|+|.|+ +++.|++.++.+++.+++.++.+|++++.++ ++||+|++-. .
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~ 161 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYG 161 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBTT
T ss_pred CCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeeccccc
Confidence 889999999999999988886446899999996 8899999999999988999999999998775 7899999843 3
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEE
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIII 261 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i 261 (379)
+.+-.....++....++|||||.++-
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccchhhhHHHHHHhhCCCCceECC
Confidence 44445678899999999999999864
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.53 E-value=8.9e-14 Score=126.15 Aligned_cols=95 Identities=28% Similarity=0.398 Sum_probs=83.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|+++. .++.+..+|+.++++++++||+|++..+..
T Consensus 86 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~ 159 (269)
T 1p91_A 86 ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAIIRIYAPC 159 (269)
T ss_dssp CCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEEEESCCC
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCCCCCCceeEEEEeCChh
Confidence 7899999999999999999986 679999999999999998864 478999999999888889999999876532
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEeccC
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 266 (379)
.++++.++|||||++++.+...
T Consensus 160 -------~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 160 -------KAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp -------CHHHHHHHEEEEEEEEEEEECT
T ss_pred -------hHHHHHHhcCCCcEEEEEEcCH
Confidence 4899999999999999988543
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.8e-14 Score=124.73 Aligned_cols=100 Identities=18% Similarity=0.293 Sum_probs=85.3
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcC-------CEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEEccCCCCCCCC-C
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFG-------AKCQGITLSPVQAQRANALAAARGL----ADKVSFQVGDALQQPFPD-G 225 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~-------~~v~gvD~s~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~-~ 225 (379)
++.+|||+|||+|.++..+++..+ .+|+++|+++.+++.|++++...+. ..++.+..+|... ++++ +
T Consensus 84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~ 162 (227)
T 1r18_A 84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPNA 162 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGGC
T ss_pred CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcCC
Confidence 378999999999999999998654 5999999999999999999876541 2579999999877 4444 7
Q ss_pred cccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 226 QFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 226 ~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+||+|++...++++. +++.++|||||++++...
T Consensus 163 ~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 163 PYNAIHVGAAAPDTP------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp SEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred CccEEEECCchHHHH------HHHHHHhcCCCEEEEEEe
Confidence 899999999998874 788999999999999764
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.3e-14 Score=119.25 Aligned_cols=96 Identities=22% Similarity=0.278 Sum_probs=83.6
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--------CCCCcc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~f 227 (379)
++.+|||+|||+|.++..+++.+ +.+++|+|+++ +++. .++.+..+|+.+.+ +++++|
T Consensus 22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 89 (180)
T 1ej0_A 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERVGDSKV 89 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHHTTCCE
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccCCCCce
Confidence 37899999999999999999985 47999999999 6532 47999999998876 667899
Q ss_pred cEEEeccccCCCCCH-----------HHHHHHHHHhcCCCCEEEEEecc
Q 016981 228 DLVWSMESGEHMPDK-----------SKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 228 D~V~~~~~l~~~~~~-----------~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
|+|++...+++..+. ..+++++.++|||||.+++..+.
T Consensus 90 D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 90 QVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred eEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 999999998888776 68999999999999999998753
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.8e-14 Score=133.41 Aligned_cols=102 Identities=22% Similarity=0.278 Sum_probs=88.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.+++++...++ ++.+..+|+.+.+ +++||+|+++..++
T Consensus 197 ~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~fD~Iv~~~~~~ 272 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV--EGEVFASNVFSEV--KGRFDMIISNPPFH 272 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTTTTC--CSCEEEEEECCCCC
T ss_pred CCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCEEEEccccccc--cCCeeEEEECCCcc
Confidence 6799999999999999999986 46999999999999999999988775 4677888887643 67899999999887
Q ss_pred CC-----CCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 238 HM-----PDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 238 ~~-----~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+. .+...+++++.++|||||.+++...
T Consensus 273 ~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 273 DGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp SSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred cCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 52 3457899999999999999999864
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.50 E-value=4.8e-14 Score=131.75 Aligned_cols=106 Identities=15% Similarity=0.152 Sum_probs=86.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEccCCCCCC----CCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQQPF----PDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~----~~~~fD~V~~~ 233 (379)
+.+|||+|||+|.++..+++. +++|+++|+|+.+++.|+++++.+++.+ ++.++++|+.+... ..++||+|++.
T Consensus 154 ~~~VLDlgcGtG~~sl~la~~-ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~d 232 (332)
T 2igt_A 154 PLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD 232 (332)
T ss_dssp CCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred CCcEEEcccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEEC
Confidence 789999999999999999986 6699999999999999999999888754 59999999877521 14689999984
Q ss_pred cc----------cCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 234 ES----------GEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 234 ~~----------l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
-. +.+..+...+++++.++|||||.+++...+
T Consensus 233 PP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 233 PPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp CCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred CccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 32 112234578999999999999998876643
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.8e-13 Score=128.77 Aligned_cols=125 Identities=25% Similarity=0.175 Sum_probs=100.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||+|.++..++... ..+|+|+|+|+.|++.|++++...|+.+++.+.++|+.++++++++||+|+++-.+.
T Consensus 218 ~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npPyg 297 (373)
T 3tm4_A 218 GGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYG 297 (373)
T ss_dssp SCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECCCC
T ss_pred CCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCCCC
Confidence 7899999999999999999874 238999999999999999999999887789999999999988778999999975543
Q ss_pred CC----CCH----HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhC
Q 016981 238 HM----PDK----SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL 309 (379)
Q Consensus 238 ~~----~~~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 309 (379)
.- ... ..+++++.++| ||.+++... +.+.+.+.+++.
T Consensus 298 ~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~---------------------------------~~~~~~~~~~~~ 342 (373)
T 3tm4_A 298 LKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT---------------------------------EKKAIEEAIAEN 342 (373)
T ss_dssp ------CCHHHHHHHHHHHHHHHE--EEEEEEEES---------------------------------CHHHHHHHHHHT
T ss_pred cccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC---------------------------------CHHHHHHHHHHc
Confidence 22 111 56788889988 555555441 456677889999
Q ss_pred CCceeEEEe
Q 016981 310 SLEDIKAED 318 (379)
Q Consensus 310 GF~~v~~~~ 318 (379)
||+......
T Consensus 343 G~~~~~~~~ 351 (373)
T 3tm4_A 343 GFEIIHHRV 351 (373)
T ss_dssp TEEEEEEEE
T ss_pred CCEEEEEEE
Confidence 999876543
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.4e-13 Score=126.91 Aligned_cols=103 Identities=12% Similarity=-0.018 Sum_probs=86.5
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-CCC-CCCcccEEEecc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPF-PDGQFDLVWSME 234 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~-~~~~fD~V~~~~ 234 (379)
++.+|||+| |+|.++..++... +.+|+|+|+|+.+++.|+++++..|+. +++++.+|+.+ ++. .+++||+|+++.
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEECC
Confidence 378999999 9999999998875 369999999999999999999988875 89999999988 653 356899999986
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 235 SGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.++.. ....+++++.++|||||++++..
T Consensus 250 p~~~~-~~~~~l~~~~~~LkpgG~~~~~~ 277 (373)
T 2qm3_A 250 PETLE-AIRAFVGRGIATLKGPRCAGYFG 277 (373)
T ss_dssp CSSHH-HHHHHHHHHHHTBCSTTCEEEEE
T ss_pred CCchH-HHHHHHHHHHHHcccCCeEEEEE
Confidence 55433 24789999999999999664444
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.9e-14 Score=124.52 Aligned_cols=97 Identities=15% Similarity=0.225 Sum_probs=80.9
Q ss_pred CCEEEEeCCcccHHHHHHHHH----c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC---CCCC-CcccE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKK----F-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFPD-GQFDL 229 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~----~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~-~~fD~ 229 (379)
+.+|||||||+|..+..+++. . +++|+|+|+|+.+++.|+. ..++++++++|+.+. +... .+||+
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~------~~~~v~~~~gD~~~~~~l~~~~~~~fD~ 155 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQGDCSDLTTFEHLREMAHPL 155 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEECCSSCSGGGGGGSSSCSSE
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc------cCCceEEEECcchhHHHHHhhccCCCCE
Confidence 679999999999999999987 3 6799999999999988872 236899999999874 4333 47999
Q ss_pred EEeccccCCCCCHHHHHHHHHH-hcCCCCEEEEEec
Q 016981 230 VWSMESGEHMPDKSKFVSELAR-VTAPAGTIIIVTW 264 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r-~LkpgG~l~i~~~ 264 (379)
|++... | .+...++.++.+ +|||||++++.+.
T Consensus 156 I~~d~~--~-~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 156 IFIDNA--H-ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp EEEESS--C-SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred EEECCc--h-HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 997654 4 377889999997 9999999999764
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=122.75 Aligned_cols=104 Identities=20% Similarity=0.286 Sum_probs=88.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C--------------
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-------------- 221 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-------------- 221 (379)
+.+|||+|||+|..+..+++.+ +.+|+++|+++.+++.|++++...++.+++.+..+|+.+. +
T Consensus 61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 140 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASD 140 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTT
T ss_pred cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccccc
Confidence 7899999999999999999986 5799999999999999999999888766799999997652 2
Q ss_pred CCC--CcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 222 FPD--GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 222 ~~~--~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+++ ++||+|++.... .+...+++++.++|||||++++.+..
T Consensus 141 f~~~~~~fD~I~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~~~~ 183 (239)
T 2hnk_A 141 FAFGPSSIDLFFLDADK---ENYPNYYPLILKLLKPGGLLIADNVL 183 (239)
T ss_dssp TCCSTTCEEEEEECSCG---GGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred ccCCCCCcCEEEEeCCH---HHHHHHHHHHHHHcCCCeEEEEEccc
Confidence 222 789999987543 34578999999999999999997643
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=125.67 Aligned_cols=102 Identities=20% Similarity=0.068 Sum_probs=89.6
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
++.+|||+|||+|.++..+++.. +.+|+|+|+++.+++.|+++++.+++ .++.++.+|+.+.+. .++||+|++....
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l-~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKL-NNVIPILADNRDVEL-KDVADRVIMGYVH 196 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTC-SSEEEEESCGGGCCC-TTCEEEEEECCCS
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEECChHHcCc-cCCceEEEECCcc
Confidence 38899999999999999999985 56999999999999999999999887 478999999988743 5789999987553
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+...++.++.+.|||||+++++.+.
T Consensus 197 ----~~~~~l~~~~~~LkpgG~l~~s~~~ 221 (272)
T 3a27_A 197 ----KTHKFLDKTFEFLKDRGVIHYHETV 221 (272)
T ss_dssp ----SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ----cHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 5678899999999999999998754
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=121.95 Aligned_cols=104 Identities=19% Similarity=0.258 Sum_probs=88.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC----CCCC--CcccEE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPD--GQFDLV 230 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~--~~fD~V 230 (379)
+.+|||+|||+|..+..+++.. +.+|+++|+++.+++.|++++...++.+++.+..+|+.+. +..+ ++||+|
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V 152 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI 152 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence 7899999999999999999876 4699999999999999999999888877899999997542 2223 789999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
++... ..+...+++++.++|||||++++.+..
T Consensus 153 ~~d~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 153 FIDAD---KRNYPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp EECSC---GGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred EECCC---HHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 97654 245688999999999999999997754
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-13 Score=124.68 Aligned_cols=101 Identities=24% Similarity=0.331 Sum_probs=84.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcc---cEEEec--
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQF---DLVWSM-- 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f---D~V~~~-- 233 (379)
+.+|||+|||+|.++..+++..+.+|+|+|+|+.+++.|++++...++.+++.|+++|+.+. ++ ++| |+|+++
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~~-~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-FK-EKFASIEMILSNPP 201 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-GG-GGTTTCCEEEECCC
T ss_pred CCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-cc-cccCCCCEEEEcCC
Confidence 67999999999999999998745799999999999999999999988866799999999773 22 578 999997
Q ss_pred ----------cccCCCC--------CHHHHHHHHH-HhcCCCCEEEEE
Q 016981 234 ----------ESGEHMP--------DKSKFVSELA-RVTAPAGTIIIV 262 (379)
Q Consensus 234 ----------~~l~~~~--------~~~~~l~~~~-r~LkpgG~l~i~ 262 (379)
.+. |-+ +...+++++. +.|+|||++++.
T Consensus 202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 222 222 1237899999 999999999974
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-13 Score=121.77 Aligned_cols=103 Identities=18% Similarity=0.270 Sum_probs=88.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C-C-----CCCcccE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-F-----PDGQFDL 229 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~-----~~~~fD~ 229 (379)
+.+|||||||+|..+..+++.. +.+|+++|+++.+++.|+++++..++.+++++..+|+.+. + + ++++||+
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~ 150 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDF 150 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCE
Confidence 7899999999999999999976 5799999999999999999999988877899999998663 2 2 2578999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|++... ..+...+++++.++|||||.+++.+.
T Consensus 151 I~~d~~---~~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 151 GFVDAD---KPNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp EEECSC---GGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred EEECCc---hHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 997643 23558899999999999999988764
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.4e-13 Score=121.43 Aligned_cols=128 Identities=16% Similarity=0.079 Sum_probs=103.2
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
++.+|||+|||+|.++..+++...++|+++|+++.+++.++++++.+++.+++.++.+|+.+++. .+.||.|++...
T Consensus 125 ~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-~~~~D~Vi~~~p-- 201 (278)
T 3k6r_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV-- 201 (278)
T ss_dssp TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC--
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-ccCCCEEEECCC--
Confidence 38999999999999999999875579999999999999999999999998889999999988753 578999987632
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcee
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 314 (379)
+....++..+.++|||||++.+.++....... -...+.+++..++.|++..
T Consensus 202 --~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~------------------------~~~~e~i~~~~~~~g~~v~ 252 (278)
T 3k6r_A 202 --VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMP------------------------REPFETFKRITKEYGYDVE 252 (278)
T ss_dssp --SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTT------------------------TTTHHHHHHHHHHTTCEEE
T ss_pred --CcHHHHHHHHHHHcCCCCEEEEEeeecccccc------------------------hhHHHHHHHHHHHcCCcEE
Confidence 34467888899999999999887654321100 0135667788889999753
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-13 Score=120.22 Aligned_cols=104 Identities=16% Similarity=0.225 Sum_probs=88.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C-CCC----CcccEE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-FPD----GQFDLV 230 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~~----~~fD~V 230 (379)
+.+|||+|||+|..+..+++.. +.+|+++|+++.+++.|+++++..++.+++++..+|+.+. + +.+ ++||+|
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v 149 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA 149 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEE
Confidence 7899999999999999999875 5799999999999999999999988877899999998653 1 211 689999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
++... ..+...+++++.++|||||.+++.+..
T Consensus 150 ~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 181 (229)
T 2avd_A 150 VVDAD---KENCSAYYERCLQLLRPGGILAVLRVL 181 (229)
T ss_dssp EECSC---STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred EECCC---HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 98654 345578999999999999999997643
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.3e-14 Score=132.77 Aligned_cols=96 Identities=21% Similarity=0.265 Sum_probs=81.0
Q ss_pred CCEEEEeCCc------ccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC------C
Q 016981 159 PKNVVDVGCG------IGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP------D 224 (379)
Q Consensus 159 ~~~vLDiGcG------tG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~------~ 224 (379)
+.+||||||| +|..+..+++.+ +++|+|+|+|+.|.. ..++++|+++|+.++++. +
T Consensus 217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~----------~~~rI~fv~GDa~dlpf~~~l~~~d 286 (419)
T 3sso_A 217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV----------DELRIRTIQGDQNDAEFLDRIARRY 286 (419)
T ss_dssp CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG----------CBTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh----------cCCCcEEEEecccccchhhhhhccc
Confidence 7899999999 777777777654 689999999999731 136899999999998776 6
Q ss_pred CcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 225 GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 225 ~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
++||+|++.. .++..+...+|++++++|||||++++.++.
T Consensus 287 ~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 287 GPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp CCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred CCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 8999999864 466677889999999999999999999865
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.46 E-value=6.6e-14 Score=128.20 Aligned_cols=112 Identities=23% Similarity=0.288 Sum_probs=85.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
.++.+++.++..+ +.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...+..++++++.+|+.+.
T Consensus 16 i~~~i~~~~~~~~-----~~~VLDiG~G~G~lt~~L~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~ 89 (285)
T 1zq9_A 16 IINSIIDKAALRP-----TDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT 89 (285)
T ss_dssp HHHHHHHHTCCCT-----TCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred HHHHHHHhcCCCC-----CCEEEEEcCcccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc
Confidence 5667777776654 889999999999999999998 6799999999999999999987665546899999999887
Q ss_pred CCCCCcccEEEeccc-----------cCCCCCHHHHH----HHH--HHhcCCCCEEE
Q 016981 221 PFPDGQFDLVWSMES-----------GEHMPDKSKFV----SEL--ARVTAPAGTII 260 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~-----------l~~~~~~~~~l----~~~--~r~LkpgG~l~ 260 (379)
+++ +||+|+++.. ++|.++...++ +++ +++|+|||.++
T Consensus 90 ~~~--~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 90 DLP--FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CCC--CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred cch--hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 764 7999998643 33333221111 233 46899999763
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.1e-13 Score=116.91 Aligned_cols=95 Identities=19% Similarity=0.299 Sum_probs=77.0
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-------------
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFG---AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------------- 221 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------------- 221 (379)
++.+|||+|||+|.++..++++++ .+|+|+|+|+.+ .. +++.+.++|+.+.+
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~-~~v~~~~~d~~~~~~~~~~~~~~i~~~ 89 (201)
T 2plw_A 22 KNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI-PNVYFIQGEIGKDNMNNIKNINYIDNM 89 (201)
T ss_dssp TTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC-TTCEEEECCTTTTSSCCC---------
T ss_pred CCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC-CCceEEEccccchhhhhhccccccccc
Confidence 378999999999999999999863 689999999831 12 47999999998876
Q ss_pred ------------CCCCcccEEEeccccCCCC----CH-------HHHHHHHHHhcCCCCEEEEEec
Q 016981 222 ------------FPDGQFDLVWSMESGEHMP----DK-------SKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 222 ------------~~~~~fD~V~~~~~l~~~~----~~-------~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+++++||+|++...+++.. +. ..+++++.++|||||++++..+
T Consensus 90 ~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 90 NNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp --CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 5667999999988777642 22 1378999999999999998664
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-12 Score=127.52 Aligned_cols=107 Identities=21% Similarity=0.311 Sum_probs=91.0
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--CCCCcccEEEe-
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-G-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWS- 232 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~- 232 (379)
++.+|||+|||+|..+..+++.. + .+|+++|+|+.+++.++++++..|+ .++.+..+|+.+.+ +++++||+|++
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~fD~Vl~D 337 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI-KIVKPLVKDARKAPEIIGEEVADKVLLD 337 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCTTCCSSSSCSSCEEEEEEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEEEcChhhcchhhccCCCCEEEEc
Confidence 38899999999999999999976 3 7999999999999999999999887 47999999998875 55578999996
Q ss_pred -----ccccCCCCCH----------------HHHHHHHHHhcCCCCEEEEEecc
Q 016981 233 -----MESGEHMPDK----------------SKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 233 -----~~~l~~~~~~----------------~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
..++.+.++. ..+++++.++|||||++++++..
T Consensus 338 ~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs 391 (450)
T 2yxl_A 338 APCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS 391 (450)
T ss_dssp CCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred CCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 3455555553 57899999999999999998753
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-12 Score=112.15 Aligned_cols=127 Identities=12% Similarity=-0.025 Sum_probs=97.2
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
++.+|||+|||+|.++..+++....+|+|+|+|+.+++.+++++...++ ++.+..+|+.+++ ++||+|+++-.++
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---~~~D~v~~~~p~~ 123 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN---SRVDIVIMNPPFG 123 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC---CCCSEEEECCCCS
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHcC---CCCCEEEEcCCCc
Confidence 3789999999999999999987434899999999999999999887765 7999999998864 4899999988777
Q ss_pred CCC--CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeE
Q 016981 238 HMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (379)
Q Consensus 238 ~~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 315 (379)
+.. ....+++++.++| ||. ++...... . +.+.+.+.+++.||+...
T Consensus 124 ~~~~~~~~~~l~~~~~~l--~~~-~~~~~~~~--------------~---------------~~~~~~~~l~~~g~~~~~ 171 (207)
T 1wy7_A 124 SQRKHADRPFLLKAFEIS--DVV-YSIHLAKP--------------E---------------VRRFIEKFSWEHGFVVTH 171 (207)
T ss_dssp SSSTTTTHHHHHHHHHHC--SEE-EEEEECCH--------------H---------------HHHHHHHHHHHTTEEEEE
T ss_pred cccCCchHHHHHHHHHhc--CcE-EEEEeCCc--------------C---------------CHHHHHHHHHHCCCeEEE
Confidence 664 3367899999998 554 43321100 0 234566788899998766
Q ss_pred EEecCC
Q 016981 316 AEDWSQ 321 (379)
Q Consensus 316 ~~~~~~ 321 (379)
+.....
T Consensus 172 ~~~~~~ 177 (207)
T 1wy7_A 172 RLTTKI 177 (207)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 654433
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-13 Score=123.77 Aligned_cols=106 Identities=11% Similarity=0.114 Sum_probs=88.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC----CCCcccEEEe
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-G-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF----PDGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~fD~V~~ 232 (379)
+.+|||+|||+|..+..+++.. + .+|+|+|+|+.+++.++++++..++. ++.+..+|+.+++. ..++||+|++
T Consensus 84 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~Vl~ 162 (274)
T 3ajd_A 84 DDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKNEIFFDKILL 162 (274)
T ss_dssp TCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred cCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhccccCCEEEE
Confidence 8899999999999999999876 4 79999999999999999999998874 89999999887643 2578999998
Q ss_pred cc------ccC------------CCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 233 ME------SGE------------HMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 233 ~~------~l~------------~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
.- ++. .......+++++.++|||||++++++..
T Consensus 163 d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs 213 (274)
T 3ajd_A 163 DAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCS 213 (274)
T ss_dssp EECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence 62 221 1134578999999999999999998743
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.39 E-value=4.6e-12 Score=109.53 Aligned_cols=86 Identities=16% Similarity=0.174 Sum_probs=71.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++. ++.++++|+.+++ ++||+|+++..+++
T Consensus 52 ~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~~---~~~D~v~~~~p~~~ 122 (200)
T 1ne2_A 52 GRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS---GKYDTWIMNPPFGS 122 (200)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC---CCEEEEEECCCC--
T ss_pred CCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHCC---CCeeEEEECCCchh
Confidence 78999999999999999998733479999999999999998763 6899999998864 68999999999988
Q ss_pred CCC--HHHHHHHHHHhc
Q 016981 239 MPD--KSKFVSELARVT 253 (379)
Q Consensus 239 ~~~--~~~~l~~~~r~L 253 (379)
..+ ...+++++.+++
T Consensus 123 ~~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 123 VVKHSDRAFIDKAFETS 139 (200)
T ss_dssp -----CHHHHHHHHHHE
T ss_pred ccCchhHHHHHHHHHhc
Confidence 864 257899999998
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.5e-13 Score=121.39 Aligned_cols=105 Identities=19% Similarity=0.245 Sum_probs=84.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC--CCCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~~~~ 235 (379)
+.+|||||||+|.++..+++.+ +.+|+++|+++.+++.|++++.... .++++++++|+.+. .+++++||+|++...
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~ 168 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFTPASRDVIIRDVF 168 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCCTTCEEEEEECCS
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhccCCCCCEEEECCC
Confidence 3599999999999999999976 6799999999999999999875332 35899999998764 345688999998643
Q ss_pred cCCC-CC---HHHHHHHHHHhcCCCCEEEEEec
Q 016981 236 GEHM-PD---KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 236 l~~~-~~---~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.... +. ..+++++++++|||||++++...
T Consensus 169 ~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 169 AGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 3221 11 27899999999999999988764
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-12 Score=121.53 Aligned_cols=105 Identities=21% Similarity=0.340 Sum_probs=84.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc--CC-CCCeEEEEccCCCC--CCCCCcccEEEe
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR--GL-ADKVSFQVGDALQQ--PFPDGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~--~~~~~~fD~V~~ 232 (379)
+.+|||||||+|.+++.+++.. ..+|+++|+|+.+++.|++++... ++ .++++++.+|+.+. ..++++||+|++
T Consensus 121 ~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~ 200 (334)
T 1xj5_A 121 PKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIV 200 (334)
T ss_dssp CCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEE
T ss_pred CCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEE
Confidence 6899999999999999999875 579999999999999999987652 33 35899999998764 234678999998
Q ss_pred ccccCC--CCC--HHHHHHHHHHhcCCCCEEEEEe
Q 016981 233 MESGEH--MPD--KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 233 ~~~l~~--~~~--~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
...... ..+ ...+++++.++|||||++++..
T Consensus 201 d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 201 DSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp CCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 643211 111 3789999999999999999863
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-12 Score=111.73 Aligned_cols=107 Identities=18% Similarity=0.196 Sum_probs=80.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
.+.++.+...+-. ++.+|||+|||+|.++..++++ +.+|+|+|+++.. . .+++.++++|+.+.
T Consensus 12 KL~ei~~~~~~~~----~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~-----------~-~~~v~~~~~D~~~~ 74 (191)
T 3dou_A 12 KLEFLLDRYRVVR----KGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME-----------E-IAGVRFIRCDIFKE 74 (191)
T ss_dssp HHHHHHHHHCCSC----TTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC-----------C-CTTCEEEECCTTSS
T ss_pred HHHHHHHHcCCCC----CCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc-----------c-CCCeEEEEccccCH
Confidence 4455555544322 4899999999999999999998 7899999999742 1 25899999999876
Q ss_pred CCC-------C----CcccEEEeccccCCCCC-----------HHHHHHHHHHhcCCCCEEEEEec
Q 016981 221 PFP-------D----GQFDLVWSMESGEHMPD-----------KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 221 ~~~-------~----~~fD~V~~~~~l~~~~~-----------~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+.. . ++||+|++......... ...+++.+.++|||||.|++..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 75 TIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp SHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 421 1 48999998754332211 14678889999999999998775
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=6.2e-13 Score=122.68 Aligned_cols=105 Identities=19% Similarity=0.270 Sum_probs=82.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHH--cCC-CCCeEEEEccCCC-CCCCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAA--RGL-ADKVSFQVGDALQ-QPFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~--~~~-~~~i~~~~~d~~~-~~~~~~~fD~V~~~ 233 (379)
+.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++.. .++ .++++++.+|+.+ ++..+++||+|++.
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d 175 (304)
T 2o07_A 96 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITD 175 (304)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEE
T ss_pred CCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEEC
Confidence 6899999999999999999875 47999999999999999998765 233 3689999999866 33346789999985
Q ss_pred cccCCCC----CHHHHHHHHHHhcCCCCEEEEEe
Q 016981 234 ESGEHMP----DKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 234 ~~l~~~~----~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
......+ ....+++++.++|||||++++..
T Consensus 176 ~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 176 SSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp CC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 4432211 12578999999999999999876
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=9.1e-13 Score=122.26 Aligned_cols=105 Identities=19% Similarity=0.219 Sum_probs=85.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHH--cC-C-CCCeEEEEccCCCC-CCCCCcccEEEe
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAA--RG-L-ADKVSFQVGDALQQ-PFPDGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~--~~-~-~~~i~~~~~d~~~~-~~~~~~fD~V~~ 232 (379)
+.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++.. .+ + .++++++.+|+.+. +..+++||+|++
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVII 157 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEE
Confidence 6899999999999999999875 57999999999999999998764 22 2 36899999998763 334678999998
Q ss_pred ccccCC-CCC------HHHHHHHHHHhcCCCCEEEEEe
Q 016981 233 MESGEH-MPD------KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 233 ~~~l~~-~~~------~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
....+. ... ..+++++++++|||||.+++..
T Consensus 158 d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 158 DLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp ECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 755433 011 3789999999999999999865
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.7e-12 Score=109.59 Aligned_cols=96 Identities=22% Similarity=0.332 Sum_probs=75.4
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcC----------CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE-EccCCCCC-----
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFG----------AKCQGITLSPVQAQRANALAAARGLADKVSFQ-VGDALQQP----- 221 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~----------~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~-~~d~~~~~----- 221 (379)
++.+|||+|||+|.++..+++..+ .+|+|+|+|+.+ .. .++.+. .+|+...+
T Consensus 22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~~~~ 89 (196)
T 2nyu_A 22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTSQRI 89 (196)
T ss_dssp TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHHHHH
Confidence 388999999999999999999864 789999999832 12 468888 88876643
Q ss_pred ---CCCCcccEEEeccccCCCC----CH-------HHHHHHHHHhcCCCCEEEEEecc
Q 016981 222 ---FPDGQFDLVWSMESGEHMP----DK-------SKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 222 ---~~~~~fD~V~~~~~l~~~~----~~-------~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+++++||+|++...++... +. ..+++++.++|||||++++..+.
T Consensus 90 ~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 90 LEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp HHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 3456899999976554432 22 47899999999999999998753
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-12 Score=125.04 Aligned_cols=105 Identities=12% Similarity=0.125 Sum_probs=87.4
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-CCCCcccEEEe--
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWS-- 232 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~V~~-- 232 (379)
++.+|||+|||+|..+..+++.. .+.|+++|+|+.+++.+++++++.|+. +.+..+|+.+++ +.+++||+|++
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~~~~FD~Il~D~ 178 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAFGTYFHRVLLDA 178 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHHCSCEEEEEEEC
T ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhccccCCEEEECC
Confidence 38999999999999999999876 369999999999999999999999884 899999987764 34678999995
Q ss_pred ----ccccCCCCCH----------------HHHHHHHHHhcCCCCEEEEEec
Q 016981 233 ----MESGEHMPDK----------------SKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 233 ----~~~l~~~~~~----------------~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
..++.+-++. .++|+++.++|||||+|++++.
T Consensus 179 PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC 230 (464)
T 3m6w_A 179 PCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC 230 (464)
T ss_dssp CCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred CcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 2233333332 6789999999999999998874
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.2e-13 Score=123.77 Aligned_cols=102 Identities=18% Similarity=0.143 Sum_probs=76.2
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH-HcCCCCCeEEE--EccCCCCCCCCCcccEEEecc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAA-ARGLADKVSFQ--VGDALQQPFPDGQFDLVWSME 234 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~i~~~--~~d~~~~~~~~~~fD~V~~~~ 234 (379)
++.+|||+|||+|.++..++++ .+|+|+|+|+ |+..++++.. ......++.++ ++|+.+++ +++||+|++..
T Consensus 82 ~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd~ 156 (276)
T 2wa2_A 82 LKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCDI 156 (276)
T ss_dssp CCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEECC
T ss_pred CCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEECC
Confidence 4889999999999999999987 5999999998 6433322100 00011168899 89998876 68899999987
Q ss_pred ccCCCCCH----H---HHHHHHHHhcCCCC--EEEEEecc
Q 016981 235 SGEHMPDK----S---KFVSELARVTAPAG--TIIIVTWC 265 (379)
Q Consensus 235 ~l~~~~~~----~---~~l~~~~r~LkpgG--~l~i~~~~ 265 (379)
+ ++..++ . .+|+++.++||||| .+++..+.
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 7 554443 1 37899999999999 99886654
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.36 E-value=5.3e-13 Score=123.58 Aligned_cols=104 Identities=19% Similarity=0.257 Sum_probs=81.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc--CC-CCCeEEEEccCCCC-CCCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR--GL-ADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~-~~~~~~fD~V~~~ 233 (379)
+.+|||||||+|..+..+++.. ..+|+++|+++.+++.|++++... ++ .++++++.+|+.+. +..+++||+|++.
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d 188 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITD 188 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEEC
T ss_pred CCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEc
Confidence 6899999999999999999875 579999999999999999987543 22 36899999998763 3346789999985
Q ss_pred cccCCCC-CH----HHHHHHHHHhcCCCCEEEEEe
Q 016981 234 ESGEHMP-DK----SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 234 ~~l~~~~-~~----~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.. .++. .. ..+++++.++|||||++++..
T Consensus 189 ~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 189 SS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred CC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 43 3321 11 688999999999999999865
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-12 Score=120.60 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=82.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHH--cCC-CCCeEEEEccCCCC-CCCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAA--RGL-ADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~--~~~-~~~i~~~~~d~~~~-~~~~~~fD~V~~~ 233 (379)
+.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.|++++.. .++ .++++++.+|+.+. +..+++||+|++.
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d 170 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIID 170 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEc
Confidence 6899999999999999999875 57999999999999999998754 222 35899999998663 3345789999975
Q ss_pred cccCCCC-----CHHHHHHHHHHhcCCCCEEEEEe
Q 016981 234 ESGEHMP-----DKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 234 ~~l~~~~-----~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
..-..+. ....++++++++|||||++++..
T Consensus 171 ~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 171 STDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp C----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 3221021 22789999999999999999864
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.4e-12 Score=117.21 Aligned_cols=105 Identities=21% Similarity=0.297 Sum_probs=84.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc--CC-CCCeEEEEccCCCC-CCCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR--GL-ADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~-~~~~~~fD~V~~~ 233 (379)
+.+|||+|||+|.+++.+++.. ..+|+++|+++.+++.|++++... ++ .++++++.+|+.+. +..+++||+|++.
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d 155 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVD 155 (275)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEES
T ss_pred CCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEEC
Confidence 7899999999999999999875 479999999999999999987542 23 36899999998763 3345789999986
Q ss_pred cccCCCCC----HHHHHHHHHHhcCCCCEEEEEe
Q 016981 234 ESGEHMPD----KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 234 ~~l~~~~~----~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
......+. ..++++++.++|||||.+++..
T Consensus 156 ~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 156 STEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp CSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 44322211 2689999999999999998864
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=8.1e-13 Score=126.07 Aligned_cols=106 Identities=15% Similarity=0.044 Sum_probs=85.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEccCCCC-C-C--CCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQQ-P-F--PDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~-~-~--~~~~fD~V~~~ 233 (379)
+.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++++.+++.+ ++.|+++|+.+. + . ...+||+|++.
T Consensus 213 ~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~D 292 (385)
T 2b78_A 213 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIID 292 (385)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEEC
Confidence 78999999999999999998633489999999999999999999998865 899999998763 2 1 24589999985
Q ss_pred ccc-----CCCCC----HHHHHHHHHHhcCCCCEEEEEec
Q 016981 234 ESG-----EHMPD----KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 234 ~~l-----~~~~~----~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
-.. .+..+ ..+++..+.++|+|||.+++...
T Consensus 293 PP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 293 PPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp CCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 332 23333 34577888999999999998763
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.7e-13 Score=122.51 Aligned_cols=102 Identities=19% Similarity=0.259 Sum_probs=75.8
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH-HcCCCCCeEEE--EccCCCCCCCCCcccEEEecc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAA-ARGLADKVSFQ--VGDALQQPFPDGQFDLVWSME 234 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~i~~~--~~d~~~~~~~~~~fD~V~~~~ 234 (379)
++.+|||+|||+|.++..+++. .+|+|+|+++ |+..+++... ......++.++ ++|+.+++ +++||+|++..
T Consensus 74 ~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd~ 148 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCDV 148 (265)
T ss_dssp CCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEECC
T ss_pred CCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEeC
Confidence 4889999999999999999987 6999999998 5332221100 00001168888 89998875 67899999987
Q ss_pred ccCCCCCH----H---HHHHHHHHhcCCCC--EEEEEecc
Q 016981 235 SGEHMPDK----S---KFVSELARVTAPAG--TIIIVTWC 265 (379)
Q Consensus 235 ~l~~~~~~----~---~~l~~~~r~LkpgG--~l~i~~~~ 265 (379)
+ ++..++ . .+|.++.++||||| .+++..+.
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 7 554443 1 37899999999999 99887654
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-12 Score=124.57 Aligned_cols=106 Identities=12% Similarity=0.068 Sum_probs=88.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC-CCCeEEEEccCCCCC--C--CCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL-ADKVSFQVGDALQQP--F--PDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~~i~~~~~d~~~~~--~--~~~~fD~V~~~ 233 (379)
+.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++++.+++ .+++.++.+|+.+.. + ..++||+|++.
T Consensus 221 ~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~d 300 (396)
T 3c0k_A 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_dssp TCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEEC
Confidence 789999999999999999987445999999999999999999999887 558999999987752 1 14689999986
Q ss_pred cc---------cCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 234 ES---------GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 234 ~~---------l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
-. .....+...++.++.+.|+|||.++++..
T Consensus 301 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 301 PPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp CSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 32 22334567899999999999999998773
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.9e-12 Score=123.97 Aligned_cols=106 Identities=17% Similarity=0.165 Sum_probs=86.5
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-CCCCcccEEEecc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSME 234 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~V~~~~ 234 (379)
++.+|||+|||+|..+..+++.. ...|+++|+|+.+++.+++++++.|+. ++.+..+|+..++ ..+++||+|++.-
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~~~~~~~FD~Il~Da 183 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELVPHFSGFFDRIVVDA 183 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHHHHHTTCEEEEEEEC
T ss_pred CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhhhccccCCEEEECC
Confidence 38999999999999999999876 369999999999999999999999984 7999999987764 2357899999732
Q ss_pred ------ccCCCCCH----------------HHHHHHHHHhcCCCCEEEEEec
Q 016981 235 ------SGEHMPDK----------------SKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 235 ------~l~~~~~~----------------~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
++.+-++. .++|.++.++|||||+|++++.
T Consensus 184 PCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 235 (456)
T 3m4x_A 184 PCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTC 235 (456)
T ss_dssp CCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred CCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 22221111 2789999999999999998874
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=9.2e-13 Score=122.50 Aligned_cols=104 Identities=20% Similarity=0.237 Sum_probs=83.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHH--cCC-CCCeEEEEccCCCC-CCCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAA--RGL-ADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~--~~~-~~~i~~~~~d~~~~-~~~~~~fD~V~~~ 233 (379)
+.+|||+|||+|.++..+++.. +.+|+++|+|+.+++.|++++.. .++ .++++++.+|+.+. +..+++||+|++.
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d 196 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVD 196 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEEC
Confidence 6899999999999999999865 57999999999999999998764 122 35899999998663 3335789999986
Q ss_pred cccCCC---CCH--HHHHHHHHHhcCCCCEEEEEe
Q 016981 234 ESGEHM---PDK--SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 234 ~~l~~~---~~~--~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.. .++ ... .++++++.++|||||++++..
T Consensus 197 ~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 197 SS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp CC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred Cc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 43 222 111 689999999999999999865
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.4e-11 Score=116.61 Aligned_cols=117 Identities=21% Similarity=0.359 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 016981 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (379)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~ 215 (379)
.....+++.+++.+.... +.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++.+++. ++.|..+
T Consensus 269 ~~~e~l~~~~~~~l~~~~-----~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~ 341 (433)
T 1uwv_A 269 GVNQKMVARALEWLDVQP-----EDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHE 341 (433)
T ss_dssp HHHHHHHHHHHHHHTCCT-----TCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEEC
T ss_pred HHHHHHHHHHHHhhcCCC-----CCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEC
Confidence 344566777777776544 789999999999999999987 789999999999999999999988874 8999999
Q ss_pred cCCC----CCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 216 DALQ----QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 216 d~~~----~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|+.+ +++++++||+|++.-.-... ..+++.+.+ ++|++.++++.
T Consensus 342 d~~~~l~~~~~~~~~fD~Vv~dPPr~g~---~~~~~~l~~-~~p~~ivyvsc 389 (433)
T 1uwv_A 342 NLEEDVTKQPWAKNGFDKVLLDPARAGA---AGVMQQIIK-LEPIRIVYVSC 389 (433)
T ss_dssp CTTSCCSSSGGGTTCCSEEEECCCTTCC---HHHHHHHHH-HCCSEEEEEES
T ss_pred CHHHHhhhhhhhcCCCCEEEECCCCccH---HHHHHHHHh-cCCCeEEEEEC
Confidence 9987 33556789999985332222 355655554 78998888764
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.3e-12 Score=123.32 Aligned_cols=107 Identities=17% Similarity=0.222 Sum_probs=88.5
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC-CCCcccEEEec-
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSM- 233 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~V~~~- 233 (379)
++.+|||+|||+|..+..+++.. +..|+++|+|+.+++.+++++++.|+ .++.+.++|+..++. .+++||+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~-~nv~~~~~D~~~~~~~~~~~fD~Il~D~ 195 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI-SNVALTHFDGRVFGAAVPEMFDAILLDA 195 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCCHHHhhhhccccCCEEEECC
Confidence 38899999999999999999976 37999999999999999999999887 479999999988653 45789999972
Q ss_pred -----cccCCCCC----------------HHHHHHHHHHhcCCCCEEEEEecc
Q 016981 234 -----ESGEHMPD----------------KSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 234 -----~~l~~~~~----------------~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
.++.+.++ ..++|.++.++|||||+|++++.+
T Consensus 196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 23333222 146899999999999999998743
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4.4e-12 Score=118.81 Aligned_cols=99 Identities=19% Similarity=0.113 Sum_probs=85.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++.. ++ .+.+|+|+|+|+.+++.|+++++.+++.+++.++.+|+.+.. ++||+|++.-..
T Consensus 196 ~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~-- 268 (336)
T 2yx1_A 196 NDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK-- 268 (336)
T ss_dssp TCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT--
T ss_pred CCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH--
Confidence 88999999999999999 87 477999999999999999999999988778999999998765 789999985321
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEeccC
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 266 (379)
....++..+.++|+|||.+++.++..
T Consensus 269 --~~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 269 --FAHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp --TGGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred --hHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 22478999999999999999987543
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.32 E-value=7.8e-12 Score=121.07 Aligned_cols=106 Identities=17% Similarity=0.247 Sum_probs=89.5
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--CCCCcccEEEe--
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWS-- 232 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~-- 232 (379)
++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.++++++..++ ++.+..+|+.+.+ +++++||+|++
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 38899999999999999999987 47999999999999999999998886 4789999998875 55678999996
Q ss_pred ----ccccCCCCCH----------------HHHHHHHHHhcCCCCEEEEEecc
Q 016981 233 ----MESGEHMPDK----------------SKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 233 ----~~~l~~~~~~----------------~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
.+++.+.++. ..+++++.++|||||++++++.+
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs 376 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 376 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 2345554543 47899999999999999998743
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-12 Score=131.83 Aligned_cols=105 Identities=17% Similarity=0.176 Sum_probs=87.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEccCCCC-CCCCCcccEEEeccc-
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQ-PFPDGQFDLVWSMES- 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~-~~~~~~fD~V~~~~~- 235 (379)
+.+|||+|||+|.++..++.....+|+++|+|+.+++.|+++++.+++. .++.++++|+.+. +...++||+|++.-.
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP~ 619 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPT 619 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCCS
T ss_pred CCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCcc
Confidence 7899999999999999999864447999999999999999999999986 5899999998773 444578999998542
Q ss_pred ----------cCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 236 ----------GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 ----------l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+....+...++.++.++|+|||.|+++.
T Consensus 620 f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~ 657 (703)
T 3v97_A 620 FSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSN 657 (703)
T ss_dssp BC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2222345778999999999999999776
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-12 Score=123.32 Aligned_cols=107 Identities=21% Similarity=0.177 Sum_probs=87.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC----CCCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF----PDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~fD~V~~~~ 234 (379)
+.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++++.+++.+++.++.+|+.+... ..++||+|++.-
T Consensus 218 ~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dp 297 (396)
T 2as0_A 218 GDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDP 297 (396)
T ss_dssp TCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEECC
Confidence 7899999999999999999873349999999999999999999998885589999999876521 256899999853
Q ss_pred ccCCC---------CCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 235 SGEHM---------PDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 235 ~l~~~---------~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
..... .+...++.++.++|+|||.++++...
T Consensus 298 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 298 PAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp CCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 32221 23467899999999999999888743
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=6e-12 Score=110.01 Aligned_cols=101 Identities=16% Similarity=0.192 Sum_probs=85.3
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
++.+|||||||+|.++..+. .+.+|+|+|+++.+++.+++++...+. +..+.++|....+.+ ++||+|++.-+++
T Consensus 105 ~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~~~-~~~DvvLllk~lh 179 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAPPA-EAGDLALIFKLLP 179 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSCCC-CBCSEEEEESCHH
T ss_pred CCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCCCC-CCcchHHHHHHHH
Confidence 37899999999999999887 467999999999999999999988774 789999999887754 6899999999999
Q ss_pred CCCCH-HHHHHHHHHhcCCCCEEEEEe
Q 016981 238 HMPDK-SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 238 ~~~~~-~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|+++. ...+-++...|+++|.++-..
T Consensus 180 ~LE~q~~~~~~~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 180 LLEREQAGSAMALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred HhhhhchhhHHHHHHHhcCCCEEEEcC
Confidence 98543 233448888999998877655
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.9e-12 Score=115.60 Aligned_cols=105 Identities=20% Similarity=0.207 Sum_probs=83.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEccCCCC-CCCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--L-ADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~-~~~~~~fD~V~~~ 233 (379)
+.+|||+|||+|.++..+++.. ..+|+++|+++.+++.|++++...+ + .++++++.+|+.+. +..+++||+|++.
T Consensus 79 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d 158 (283)
T 2i7c_A 79 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVD 158 (283)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEE
T ss_pred CCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEEc
Confidence 6899999999999999999865 5799999999999999999875431 1 35899999998763 2235789999985
Q ss_pred cccCCCCC--H--HHHHHHHHHhcCCCCEEEEEe
Q 016981 234 ESGEHMPD--K--SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 234 ~~l~~~~~--~--~~~l~~~~r~LkpgG~l~i~~ 263 (379)
....+.+. . .+++++++++|||||.+++..
T Consensus 159 ~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 159 SSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp CCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 43322221 1 689999999999999999874
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.4e-12 Score=113.52 Aligned_cols=102 Identities=10% Similarity=0.100 Sum_probs=88.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||||||+|.++..++... ..+|+++|+++.+++.+++++..+|+ +..+.+.|....+ +.+.||+|++.-+++
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~--~~~~~v~D~~~~~-p~~~~DvaL~lkti~ 209 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV--PHRTNVADLLEDR-LDEPADVTLLLKTLP 209 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC--CEEEEECCTTTSC-CCSCCSEEEETTCHH
T ss_pred CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeeecccC-CCCCcchHHHHHHHH
Confidence 7799999999999999998875 67999999999999999999999886 4888999987655 468899999999999
Q ss_pred CCCCH--HHHHHHHHHhcCCCCEEEEEec
Q 016981 238 HMPDK--SKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 238 ~~~~~--~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|+++. ...+ ++...|+|+|.++-...
T Consensus 210 ~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ 237 (281)
T 3lcv_B 210 CLETQQRGSGW-EVIDIVNSPNIVVTFPT 237 (281)
T ss_dssp HHHHHSTTHHH-HHHHHSSCSEEEEEEEC
T ss_pred HhhhhhhHHHH-HHHHHhCCCCEEEeccc
Confidence 99654 3445 99999999999887763
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.5e-12 Score=120.86 Aligned_cols=104 Identities=23% Similarity=0.209 Sum_probs=82.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||+|.++..+++. ++.|+++|+|+.+++.|+++++.+++. ..+.++|+.+. +...+.||+|++.-...
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~-ga~V~avDis~~al~~a~~n~~~ng~~--~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARK-GAYALAVDKDLEALGVLDQAALRLGLR--VDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCC--CEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCeEEEcccchhHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHhCCC--CcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 889999999999999999987 677999999999999999999998875 35668888764 22134499999864321
Q ss_pred CC---------CCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 238 HM---------PDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 238 ~~---------~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
.- .+...++..+.++|||||+|++....
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 11 12357889999999999999977643
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-11 Score=114.30 Aligned_cols=103 Identities=18% Similarity=0.234 Sum_probs=86.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEe
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFG------AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~------~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~ 232 (379)
+.+|||+|||+|.++..+++... .+++|+|+++.+++.|+.++...++ ++.+..+|.... ...++||+|++
T Consensus 131 ~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~-~~~~~fD~Ii~ 207 (344)
T 2f8l_A 131 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLAN-LLVDPVDVVIS 207 (344)
T ss_dssp EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSC-CCCCCEEEEEE
T ss_pred CCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCc-cccCCccEEEE
Confidence 68999999999999999988762 6899999999999999999887776 688999998663 34578999999
Q ss_pred ccccCCCCCH------------------HHHHHHHHHhcCCCCEEEEEec
Q 016981 233 MESGEHMPDK------------------SKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 233 ~~~l~~~~~~------------------~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+-.+++++.. ..++.++.+.|||||++++...
T Consensus 208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 9777665432 2579999999999999988773
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-12 Score=117.79 Aligned_cols=103 Identities=18% Similarity=0.267 Sum_probs=81.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc--CC--------CCCeEEEEccCCCC-CCCCCcc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR--GL--------ADKVSFQVGDALQQ-PFPDGQF 227 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~--------~~~i~~~~~d~~~~-~~~~~~f 227 (379)
+.+|||||||+|.++..+++....+|+++|+++.+++.|++++ .. ++ .++++++.+|+.+. +. +++|
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~f 153 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGF 153 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCE
T ss_pred CCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cCCe
Confidence 6899999999999999999873359999999999999999987 33 22 36899999997653 22 5789
Q ss_pred cEEEeccccCCCC--C--HHHHHHHHHHhcCCCCEEEEEe
Q 016981 228 DLVWSMESGEHMP--D--KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 228 D~V~~~~~l~~~~--~--~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|+|++......-+ . ...++++++++|||||.+++..
T Consensus 154 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 154 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9999865432111 1 2678999999999999998864
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-12 Score=123.82 Aligned_cols=104 Identities=18% Similarity=0.111 Sum_probs=86.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC----CCCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF----PDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~fD~V~~~~ 234 (379)
+.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++++.+++. ++.++.+|+.+... .+++||+|++.-
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~-~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-CceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 789999999999999999998 679999999999999999999998874 59999999877521 256899999853
Q ss_pred ccCCC---------CCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 235 SGEHM---------PDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 235 ~l~~~---------~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
..... .+...++.++.++|+|||.++++..
T Consensus 288 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 288 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 22111 2336789999999999999999874
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.1e-10 Score=106.77 Aligned_cols=187 Identities=18% Similarity=0.240 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHH--------c--------CCEEEEEeCCHHHHHHHHHH
Q 016981 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKK--------F--------GAKCQGITLSPVQAQRANAL 200 (379)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~--------~--------~~~v~gvD~s~~~~~~a~~~ 200 (379)
....++++.++.+...........+|+|+|||+|..+..+... . ..+|+..|+........=+.
T Consensus 31 ~~~~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~ 110 (374)
T 3b5i_A 31 SMLHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQL 110 (374)
T ss_dssp HHHHHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhh
Confidence 3455677777766554321234689999999999988877332 1 23677777655443322111
Q ss_pred HHHc-----------CCCCCeEEEEc---cCCCCCCCCCcccEEEeccccCCCC--------------------------
Q 016981 201 AAAR-----------GLADKVSFQVG---DALQQPFPDGQFDLVWSMESGEHMP-------------------------- 240 (379)
Q Consensus 201 ~~~~-----------~~~~~i~~~~~---d~~~~~~~~~~fD~V~~~~~l~~~~-------------------------- 240 (379)
+... +...+-.|..+ .+....+|+++||+|+++.+||++.
T Consensus 111 L~~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~ 190 (374)
T 3b5i_A 111 LPPLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGE 190 (374)
T ss_dssp SCCBCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCH
T ss_pred hhhhhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCH
Confidence 1110 00001112222 2233357899999999999999986
Q ss_pred ------------CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccc-----hHHHHHHHHH----------hhccCC
Q 016981 241 ------------DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQ-----PWEQELLKKI----------CDAYYL 293 (379)
Q Consensus 241 ------------~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~----------~~~~~~ 293 (379)
|...+|+..++.|+|||+++++.....+..+....-. ......+... ...+..
T Consensus 191 ~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~ 270 (374)
T 3b5i_A 191 KTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNI 270 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCc
Confidence 3345688899999999999999876655322210000 0111111111 111333
Q ss_pred C-CCCCHHHHHHHHH-hCCCceeEEEecCCCc
Q 016981 294 P-AWCSTADYVKLLQ-SLSLEDIKAEDWSQNV 323 (379)
Q Consensus 294 ~-~~~~~~~~~~~l~-~aGF~~v~~~~~~~~~ 323 (379)
| ++.+.+++++.++ +.||++..++.+..+.
T Consensus 271 P~y~ps~~E~~~~l~~~~~F~I~~le~~~~~~ 302 (374)
T 3b5i_A 271 PVYAPSLQDFKEVVDANGSFAIDKLVVYKGGS 302 (374)
T ss_dssp CBCCCCHHHHHHHHHHHCSEEEEEEEEEECCC
T ss_pred cccCCCHHHHHHHHHhcCCcEEEEEEEEeecC
Confidence 3 3469999999998 5999998887665443
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-12 Score=116.50 Aligned_cols=96 Identities=13% Similarity=0.004 Sum_probs=80.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc--CC-CCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR--GL-ADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
+.+|||||||+|.++..+++. +.+|+++|+++.+++.|++++... +. .+++++..+|+.+.. ++||+|++.
T Consensus 73 ~~~VL~iG~G~G~~~~~ll~~-~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d-- 146 (262)
T 2cmg_A 73 LKEVLIVDGFDLELAHQLFKY-DTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL-- 146 (262)
T ss_dssp CCEEEEESSCCHHHHHHHTTS-SCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES--
T ss_pred CCEEEEEeCCcCHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC--
Confidence 689999999999999999887 689999999999999998865321 11 258999999987754 789999986
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
..++..+++++.++|||||.+++..
T Consensus 147 ---~~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 147 ---QEPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp ---SCCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred ---CCChHHHHHHHHHhcCCCcEEEEEc
Confidence 3566779999999999999999864
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-11 Score=111.36 Aligned_cols=113 Identities=19% Similarity=0.155 Sum_probs=83.3
Q ss_pred CCCEEEEeCCcc------cHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE-EEccCCCCCCCCCccc
Q 016981 158 RPKNVVDVGCGI------GGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSF-QVGDALQQPFPDGQFD 228 (379)
Q Consensus 158 ~~~~vLDiGcGt------G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~-~~~d~~~~~~~~~~fD 228 (379)
++.+|||+|||+ |. ..+++.. +.+|+|+|+|+. + +++.+ +++|+.+++++ ++||
T Consensus 63 ~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v-~~v~~~i~gD~~~~~~~-~~fD 125 (290)
T 2xyq_A 63 YNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------V-SDADSTLIGDCATVHTA-NKWD 125 (290)
T ss_dssp TTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------B-CSSSEEEESCGGGCCCS-SCEE
T ss_pred CCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------C-CCCEEEEECccccCCcc-Cccc
Confidence 488999999944 66 4455554 379999999987 1 36888 99999887764 7899
Q ss_pred EEEeccccCC--------C---CCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016981 229 LVWSMESGEH--------M---PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (379)
Q Consensus 229 ~V~~~~~l~~--------~---~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (379)
+|+++..... . .....+++++.++|||||++++..+...
T Consensus 126 ~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~------------------------------ 175 (290)
T 2xyq_A 126 LIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS------------------------------ 175 (290)
T ss_dssp EEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS------------------------------
T ss_pred EEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC------------------------------
Confidence 9998643221 1 1135899999999999999999764321
Q ss_pred CHHHHHHHHHhCCCceeEEE
Q 016981 298 STADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 298 ~~~~~~~~l~~aGF~~v~~~ 317 (379)
...++.+++++.||..++..
T Consensus 176 ~~~~l~~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 176 WNADLYKLMGHFSWWTAFVT 195 (290)
T ss_dssp CCHHHHHHHTTEEEEEEEEE
T ss_pred CHHHHHHHHHHcCCcEEEEE
Confidence 12467788888999877664
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.9e-11 Score=112.50 Aligned_cols=87 Identities=18% Similarity=0.316 Sum_probs=69.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
.++.+++.++... +.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...+. +++.++.+|+.+.
T Consensus 30 i~~~i~~~~~~~~-----~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~ 102 (299)
T 2h1r_A 30 ILDKIIYAAKIKS-----SDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKT 102 (299)
T ss_dssp HHHHHHHHHCCCT-----TCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSS
T ss_pred HHHHHHHhcCCCC-----cCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhC
Confidence 4556666666544 889999999999999999987 67999999999999999999887766 5899999999887
Q ss_pred CCCCCcccEEEecccc
Q 016981 221 PFPDGQFDLVWSMESG 236 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l 236 (379)
++ ++||+|+++...
T Consensus 103 ~~--~~~D~Vv~n~py 116 (299)
T 2h1r_A 103 VF--PKFDVCTANIPY 116 (299)
T ss_dssp CC--CCCSEEEEECCG
T ss_pred Cc--ccCCEEEEcCCc
Confidence 65 479999986443
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.24 E-value=3.9e-12 Score=113.72 Aligned_cols=83 Identities=17% Similarity=0.276 Sum_probs=66.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
.++.+++.++... +.+|||+|||+|.++..++++ +.+|+|+|+|+.+++.+++++... +++.++.+|+.++
T Consensus 18 ~~~~i~~~~~~~~-----~~~VLDiG~G~G~lt~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~ 88 (244)
T 1qam_A 18 NIDKIMTNIRLNE-----HDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQF 88 (244)
T ss_dssp HHHHHHTTCCCCT-----TCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGC
T ss_pred HHHHHHHhCCCCC-----CCEEEEEeCCchHHHHHHHHc-CCeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhC
Confidence 5566666666544 889999999999999999998 589999999999999999887532 5899999999998
Q ss_pred CCCC-CcccEEEec
Q 016981 221 PFPD-GQFDLVWSM 233 (379)
Q Consensus 221 ~~~~-~~fD~V~~~ 233 (379)
++++ ..| .|+++
T Consensus 89 ~~~~~~~~-~vv~n 101 (244)
T 1qam_A 89 KFPKNQSY-KIFGN 101 (244)
T ss_dssp CCCSSCCC-EEEEE
T ss_pred CcccCCCe-EEEEe
Confidence 8764 345 34443
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=6e-10 Score=107.28 Aligned_cols=97 Identities=19% Similarity=0.301 Sum_probs=79.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++.+++. +.|..+|+.+... .+||+|++.-.-..
T Consensus 291 ~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~~--~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 291 GEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVSV--KGFDTVIVDPPRAG 365 (425)
T ss_dssp SSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCCC--TTCSEEEECCCTTC
T ss_pred CCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcCc--cCCCEEEEcCCccc
Confidence 789999999999999999987 679999999999999999999988874 9999999988742 28999998543221
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
. ...+++.+. .|+|||.++++.
T Consensus 366 ~--~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 366 L--HPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp S--CHHHHHHHH-HHCCSEEEEEES
T ss_pred h--HHHHHHHHH-hcCCCcEEEEEC
Confidence 1 134666654 599999998864
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-10 Score=105.43 Aligned_cols=88 Identities=22% Similarity=0.256 Sum_probs=75.7
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
..++.+++.+.+.+ +.+|||||||+|.++..+++. +.+|+|+|+++.+++.+++++... ++++++++|+.+
T Consensus 37 ~i~~~Iv~~l~~~~-----~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~~---~~v~vi~gD~l~ 107 (295)
T 3gru_A 37 NFVNKAVESANLTK-----DDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKELY---NNIEIIWGDALK 107 (295)
T ss_dssp HHHHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHHC---SSEEEEESCTTT
T ss_pred HHHHHHHHhcCCCC-----cCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhccC---CCeEEEECchhh
Confidence 36677777777655 889999999999999999998 789999999999999999998732 589999999999
Q ss_pred CCCCCCcccEEEecccc
Q 016981 220 QPFPDGQFDLVWSMESG 236 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l 236 (379)
.++++.+||.|+++...
T Consensus 108 ~~~~~~~fD~Iv~NlPy 124 (295)
T 3gru_A 108 VDLNKLDFNKVVANLPY 124 (295)
T ss_dssp SCGGGSCCSEEEEECCG
T ss_pred CCcccCCccEEEEeCcc
Confidence 88877789999977443
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-11 Score=114.24 Aligned_cols=100 Identities=18% Similarity=0.254 Sum_probs=72.9
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeC----CHHHHHHHHHHHHHcCCCCCeEEEEc-cCCCCCCCCCcccEEEe
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL----SPVQAQRANALAAARGLADKVSFQVG-DALQQPFPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~----s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~fD~V~~ 232 (379)
++.+|||+|||+|.++..++++ .+|+|+|+ ++.+++.++ .+..+ .+++.+.++ |+..++ .++||+|++
T Consensus 82 ~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l~--~~~fD~V~s 154 (305)
T 2p41_A 82 PEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFIP--PERCDTLLC 154 (305)
T ss_dssp CCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTSC--CCCCSEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccCC--cCCCCEEEE
Confidence 4789999999999999999987 48999999 554432211 01111 146899988 887765 568999999
Q ss_pred ccccC---CCCCHH---HHHHHHHHhcCCCCEEEEEec
Q 016981 233 MESGE---HMPDKS---KFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 233 ~~~l~---~~~~~~---~~l~~~~r~LkpgG~l~i~~~ 264 (379)
..++. +..+.. .+|..+.++|||||.+++..+
T Consensus 155 d~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 155 DIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp CCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred CCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 76653 111222 578899999999999988654
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-13 Score=123.26 Aligned_cols=113 Identities=17% Similarity=0.228 Sum_probs=85.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
.++.+++.++... +.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++.. ..++++++.+|+.+.
T Consensus 17 ~~~~i~~~~~~~~-----~~~VLDiG~G~G~~~~~l~~~-~~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~~~ 87 (245)
T 1yub_A 17 VLNQIIKQLNLKE-----TDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQF 87 (245)
T ss_dssp THHHHHHHCCCCS-----SEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTT
T ss_pred HHHHHHHhcCCCC-----CCEEEEEeCCCCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHhc---cCCceEEEECChhhc
Confidence 4566677766554 889999999999999999998 5899999999999999887664 125799999999998
Q ss_pred CCCC-CcccEEEeccccC-----------CCCCHHHHH----HHHHHhcCCCCEEEEEe
Q 016981 221 PFPD-GQFDLVWSMESGE-----------HMPDKSKFV----SELARVTAPAGTIIIVT 263 (379)
Q Consensus 221 ~~~~-~~fD~V~~~~~l~-----------~~~~~~~~l----~~~~r~LkpgG~l~i~~ 263 (379)
++++ ++| .|+++-... |..+...++ +.+.|+|+|||.+.+..
T Consensus 88 ~~~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 88 QFPNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp TCCCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred CcccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 8763 678 566542211 122233344 66899999999987754
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.6e-10 Score=107.28 Aligned_cols=117 Identities=18% Similarity=0.102 Sum_probs=92.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-C--------------------------------------
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-G-------------------------------------- 181 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~-------------------------------------- 181 (379)
+...++...+..+ +..|||.+||+|.+++.++... +
T Consensus 182 LAaall~l~~~~~-----~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 256 (384)
T 3ldg_A 182 MAAAIILLSNWFP-----DKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQ 256 (384)
T ss_dssp HHHHHHHHTTCCT-----TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHhCCCC-----CCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCC
Confidence 4444566656554 7899999999999999888654 2
Q ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC-CCC---CHHHHHHHHHHhcCC--
Q 016981 182 AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE-HMP---DKSKFVSELARVTAP-- 255 (379)
Q Consensus 182 ~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~-~~~---~~~~~l~~~~r~Lkp-- 255 (379)
.+|+|+|+++.|++.|++++...|+.+++.+.++|+.+++.+ ++||+|+++--.. -+. +...+++++.+.||+
T Consensus 257 ~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~ 335 (384)
T 3ldg_A 257 LDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLK 335 (384)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCT
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCC
Confidence 359999999999999999999999977899999999998764 5899999984432 222 335677777778876
Q ss_pred CCEEEEEe
Q 016981 256 AGTIIIVT 263 (379)
Q Consensus 256 gG~l~i~~ 263 (379)
||.+++..
T Consensus 336 g~~~~iit 343 (384)
T 3ldg_A 336 TWSQFILT 343 (384)
T ss_dssp TSEEEEEE
T ss_pred CcEEEEEE
Confidence 99988876
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.5e-10 Score=107.79 Aligned_cols=117 Identities=15% Similarity=0.124 Sum_probs=91.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-C--------------------------------------
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-G-------------------------------------- 181 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~-------------------------------------- 181 (379)
+...++...+... +..|||.+||+|.+++.++... +
T Consensus 189 lAa~ll~l~~~~~-----~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 263 (393)
T 3k0b_A 189 MAAALVLLTSWHP-----DRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQP 263 (393)
T ss_dssp HHHHHHHHSCCCT-----TSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHhCCCC-----CCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCC
Confidence 4445566666554 7899999999999998888754 2
Q ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC-C---CCHHHHHHHHHHhcCC--
Q 016981 182 AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH-M---PDKSKFVSELARVTAP-- 255 (379)
Q Consensus 182 ~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~-~---~~~~~~l~~~~r~Lkp-- 255 (379)
.+|+|+|+++.|++.|++++...|+..++.+.++|+.+++.+ ++||+|+++--... + .+...+++++.+.||+
T Consensus 264 ~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~ 342 (393)
T 3k0b_A 264 LNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMP 342 (393)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCT
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCC
Confidence 359999999999999999999999877899999999998764 58999999844321 2 1234566666667766
Q ss_pred CCEEEEEe
Q 016981 256 AGTIIIVT 263 (379)
Q Consensus 256 gG~l~i~~ 263 (379)
||.+++..
T Consensus 343 g~~~~iit 350 (393)
T 3k0b_A 343 TWSVYVLT 350 (393)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEE
Confidence 89888876
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.14 E-value=3e-10 Score=108.09 Aligned_cols=117 Identities=18% Similarity=0.177 Sum_probs=91.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-C--------------------------------------
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-G-------------------------------------- 181 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~-------------------------------------- 181 (379)
+...++...+... +.+|||++||+|.+++.++... +
T Consensus 183 lAa~ll~~~~~~~-----~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 257 (385)
T 3ldu_A 183 LAAGLIYLTPWKA-----GRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESK 257 (385)
T ss_dssp HHHHHHHTSCCCT-----TSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCC
T ss_pred HHHHHHHhhCCCC-----CCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCC
Confidence 4444556555544 7899999999999999988763 1
Q ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC-C---CCHHHHHHHHHHhcCC--
Q 016981 182 AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH-M---PDKSKFVSELARVTAP-- 255 (379)
Q Consensus 182 ~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~-~---~~~~~~l~~~~r~Lkp-- 255 (379)
.+|+|+|+++.+++.|++++...|+..++.|.++|+.+++.+ ++||+|+++-.... + .+...+++++.+.||+
T Consensus 258 ~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~ 336 (385)
T 3ldu_A 258 FKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLK 336 (385)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSB
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCC
Confidence 479999999999999999999999877899999999988654 68999999765432 2 1235677777777776
Q ss_pred CCEEEEEe
Q 016981 256 AGTIIIVT 263 (379)
Q Consensus 256 gG~l~i~~ 263 (379)
||.+++..
T Consensus 337 g~~~~iit 344 (385)
T 3ldu_A 337 NWSYYLIT 344 (385)
T ss_dssp SCEEEEEE
T ss_pred CCEEEEEE
Confidence 88888876
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.11 E-value=3.5e-10 Score=109.96 Aligned_cols=104 Identities=16% Similarity=0.252 Sum_probs=85.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--------------CCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEccCCCCCCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--------------GAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQQPFP 223 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~ 223 (379)
+.+|||.|||+|.++..+++.. +.+++|+|+++.+++.|+.++...|+.. ++.+.++|....+..
T Consensus 172 ~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~~ 251 (445)
T 2okc_A 172 GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEPS 251 (445)
T ss_dssp TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCCS
T ss_pred CCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCccc
Confidence 7899999999999998888752 3579999999999999999988777642 677899998776543
Q ss_pred CCcccEEEeccccCCCCC-----------------HHHHHHHHHHhcCCCCEEEEEe
Q 016981 224 DGQFDLVWSMESGEHMPD-----------------KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 224 ~~~fD~V~~~~~l~~~~~-----------------~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
++||+|+++-.+.+... ...++..+.++|||||+++++.
T Consensus 252 -~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~ 307 (445)
T 2okc_A 252 -TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 307 (445)
T ss_dssp -SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEE
Confidence 48999999866655321 1378999999999999998876
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.8e-10 Score=107.88 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 016981 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (379)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d 216 (379)
....++..+++.+... +.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++++.+++ ++++|+.+|
T Consensus 198 ~~~~l~~~~~~~~~~~------~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~-~~v~~~~~d 269 (369)
T 3bt7_A 198 MNIQMLEWALDVTKGS------KGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHI-DNVQIIRMA 269 (369)
T ss_dssp HHHHHHHHHHHHTTTC------CSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTC-CSEEEECCC
T ss_pred HHHHHHHHHHHHhhcC------CCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECC
Confidence 3455667777766432 568999999999999999885 57999999999999999999999888 589999999
Q ss_pred CCCCC--CCC--------------CcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 217 ALQQP--FPD--------------GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 217 ~~~~~--~~~--------------~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.+.. +.. .+||+|++.--- ..+..++.+.|+++|++++..
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr------~g~~~~~~~~l~~~g~ivyvs 326 (369)
T 3bt7_A 270 AEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPR------SGLDSETEKMVQAYPRILYIS 326 (369)
T ss_dssp SHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCT------TCCCHHHHHHHTTSSEEEEEE
T ss_pred HHHHHHHHhhccccccccccccccCCCCEEEECcCc------cccHHHHHHHHhCCCEEEEEE
Confidence 87641 221 379999864211 123456777788999988876
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-09 Score=100.17 Aligned_cols=105 Identities=13% Similarity=0.103 Sum_probs=80.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCC---CcccEEEe
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPD---GQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~fD~V~~ 232 (379)
++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++++.|+ .++.++.+|+.+++... ++||.|++
T Consensus 102 ~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Vl~ 180 (309)
T 2b9e_A 102 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSPSDPRYHEVHYILL 180 (309)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCChHhcCccccccCCCCEEEE
Confidence 38899999999999999999875 36999999999999999999999887 58999999998764321 57999996
Q ss_pred c------cccCCCC-----------CH-------HHHHHHHHHhcCCCCEEEEEec
Q 016981 233 M------ESGEHMP-----------DK-------SKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 233 ~------~~l~~~~-----------~~-------~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
. .++..-+ +. .++|..+.++|+ ||+|+.++-
T Consensus 181 D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTC 235 (309)
T 2b9e_A 181 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTC 235 (309)
T ss_dssp CCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEES
T ss_pred cCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECC
Confidence 2 2222211 11 246777888887 998888763
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.07 E-value=4.4e-10 Score=100.74 Aligned_cols=83 Identities=14% Similarity=0.192 Sum_probs=68.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
.++.+++.++..+ +.+|||||||+|.++..+++. +.+|+|+|+++.|++.+++++.. .++++++++|+.+.
T Consensus 17 i~~~iv~~~~~~~-----~~~VLEIG~G~G~lt~~La~~-~~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~~ 87 (255)
T 3tqs_A 17 VLQKIVSAIHPQK-----TDTLVEIGPGRGALTDYLLTE-CDNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQF 87 (255)
T ss_dssp HHHHHHHHHCCCT-----TCEEEEECCTTTTTHHHHTTT-SSEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTTC
T ss_pred HHHHHHHhcCCCC-----cCEEEEEcccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHhC
Confidence 5666777777665 889999999999999999987 68999999999999999998864 25899999999998
Q ss_pred CCCC----CcccEEEec
Q 016981 221 PFPD----GQFDLVWSM 233 (379)
Q Consensus 221 ~~~~----~~fD~V~~~ 233 (379)
++++ ++|| |+++
T Consensus 88 ~~~~~~~~~~~~-vv~N 103 (255)
T 3tqs_A 88 DFSSVKTDKPLR-VVGN 103 (255)
T ss_dssp CGGGSCCSSCEE-EEEE
T ss_pred CHHHhccCCCeE-EEec
Confidence 7543 5688 5544
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=3.5e-10 Score=107.25 Aligned_cols=101 Identities=13% Similarity=0.009 Sum_probs=84.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEEccCCCC-C-CCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-G-AKCQGITLSPVQAQRANALAAARGLADK-VSFQVGDALQQ-P-FPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~-~-~~~~~fD~V~~~ 233 (379)
+.+|||++||+|.++..++.+. | .+|+++|+++.+++.++++++.+++.++ +.++.+|+.+. . ...+.||+|++.
T Consensus 53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lD 132 (392)
T 3axs_A 53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLD 132 (392)
T ss_dssp CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEEC
T ss_pred CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEEC
Confidence 7899999999999999999875 4 5899999999999999999999998655 99999998654 2 224679999976
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
- ......++..+.+.|+|||.|+++.
T Consensus 133 P----~g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 133 P----FGTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp C----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred C----CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence 4 2233678999999999999888765
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=7.7e-10 Score=104.83 Aligned_cols=100 Identities=14% Similarity=0.039 Sum_probs=82.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc---------------CCCCCeEEEEccCCCCC-
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR---------------GLADKVSFQVGDALQQP- 221 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~---------------~~~~~i~~~~~d~~~~~- 221 (379)
+.+|||+|||+|..+..++.+. +.+|+++|+++.+++.++++++.+ ++. ++.+..+|+....
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHDDANRLMA 126 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEESCHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcCcHHHHHH
Confidence 7899999999999999999986 568999999999999999999988 763 4999999987652
Q ss_pred CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
...+.||+|++. .. .....++..+.+.|||||.++++.
T Consensus 127 ~~~~~fD~I~lD-P~---~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLD-PF---GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEEC-CS---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeC-CC---CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 113579999953 22 234788999999999999887764
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=5.3e-09 Score=98.51 Aligned_cols=160 Identities=15% Similarity=0.171 Sum_probs=102.2
Q ss_pred CCEEEEeCCcccHHHHHHHHH-------------c-----CCEEEEEeCC-----------HHHHHHHHHHHHHcCCCCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKK-------------F-----GAKCQGITLS-----------PVQAQRANALAAARGLADK 209 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~-------------~-----~~~v~gvD~s-----------~~~~~~a~~~~~~~~~~~~ 209 (379)
..+|+|+||++|..+..+... . ..+|+..|+. +.+.+.+++ ..|...+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~~~ 129 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRKIG 129 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCCTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccCCCC
Confidence 589999999999998877765 1 2468888987 444443322 1221113
Q ss_pred eEEEEccCCC---CCCCCCcccEEEeccccCCCCCHH---------------------------------------HHHH
Q 016981 210 VSFQVGDALQ---QPFPDGQFDLVWSMESGEHMPDKS---------------------------------------KFVS 247 (379)
Q Consensus 210 i~~~~~d~~~---~~~~~~~fD~V~~~~~l~~~~~~~---------------------------------------~~l~ 247 (379)
..|..+.... ..||++++|+|+++.+||++.+.. .+|+
T Consensus 130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~ 209 (384)
T 2efj_A 130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR 209 (384)
T ss_dssp SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4566655444 468899999999999999985432 1256
Q ss_pred HHHHhcCCCCEEEEEeccCCCC--CCCcc-ccchHHHHHHHH------HhhccCCC-CCCCHHHHHHHHHhCC-CceeEE
Q 016981 248 ELARVTAPAGTIIIVTWCHRDL--APSEE-SLQPWEQELLKK------ICDAYYLP-AWCSTADYVKLLQSLS-LEDIKA 316 (379)
Q Consensus 248 ~~~r~LkpgG~l~i~~~~~~~~--~~~~~-~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~l~~aG-F~~v~~ 316 (379)
..++.|+|||++++.....++. .+... .+...+..+..+ -...+..| ++.+.++++.++++.| |++...
T Consensus 210 ~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~l 289 (384)
T 2efj_A 210 IHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYL 289 (384)
T ss_dssp HHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEE
T ss_pred HHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEE
Confidence 6689999999999998776553 21111 111111111111 11223334 3569999999999985 888887
Q ss_pred EecCC
Q 016981 317 EDWSQ 321 (379)
Q Consensus 317 ~~~~~ 321 (379)
+.+..
T Consensus 290 e~~~~ 294 (384)
T 2efj_A 290 ETFNA 294 (384)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 65543
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=9.6e-10 Score=106.02 Aligned_cols=108 Identities=17% Similarity=0.237 Sum_probs=81.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
+.+.+++.+... ++.+|||+|||+|.++..++++. +.+++|+|+++.+++.| .++.+.++|+.
T Consensus 27 l~~~~~~~~~~~-----~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~ 91 (421)
T 2ih2_A 27 VVDFMVSLAEAP-----RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFL 91 (421)
T ss_dssp HHHHHHHHCCCC-----TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGG
T ss_pred HHHHHHHhhccC-----CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChh
Confidence 444555555432 26699999999999999999874 57999999999998765 37899999988
Q ss_pred CCCCCCCcccEEEeccccCC----------CCCH-------------------HHHHHHHHHhcCCCCEEEEEec
Q 016981 219 QQPFPDGQFDLVWSMESGEH----------MPDK-------------------SKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~----------~~~~-------------------~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.... .++||+|+++-.... +.+. ..+++.+.++|+|||++++...
T Consensus 92 ~~~~-~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 92 LWEP-GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp GCCC-SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcCc-cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 7643 478999999632221 2111 2568899999999999998874
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=7.1e-10 Score=100.15 Aligned_cols=85 Identities=21% Similarity=0.174 Sum_probs=70.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
.++.+++.+++.+ + +|||||||+|.++..+++. +.+|+|+|+++.+++.+++++.. .+++++++|+.+.
T Consensus 35 i~~~Iv~~~~~~~-----~-~VLEIG~G~G~lt~~L~~~-~~~V~avEid~~~~~~l~~~~~~----~~v~vi~~D~l~~ 103 (271)
T 3fut_A 35 HLRRIVEAARPFT-----G-PVFEVGPGLGALTRALLEA-GAEVTAIEKDLRLRPVLEETLSG----LPVRLVFQDALLY 103 (271)
T ss_dssp HHHHHHHHHCCCC-----S-CEEEECCTTSHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTTT----SSEEEEESCGGGS
T ss_pred HHHHHHHhcCCCC-----C-eEEEEeCchHHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcCC----CCEEEEECChhhC
Confidence 5667777777665 7 9999999999999999998 68999999999999999998752 5899999999988
Q ss_pred CCCCC-cccEEEecccc
Q 016981 221 PFPDG-QFDLVWSMESG 236 (379)
Q Consensus 221 ~~~~~-~fD~V~~~~~l 236 (379)
++++. .+|.|+++...
T Consensus 104 ~~~~~~~~~~iv~NlPy 120 (271)
T 3fut_A 104 PWEEVPQGSLLVANLPY 120 (271)
T ss_dssp CGGGSCTTEEEEEEECS
T ss_pred ChhhccCccEEEecCcc
Confidence 76542 68888876543
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=7.5e-10 Score=101.54 Aligned_cols=87 Identities=21% Similarity=0.242 Sum_probs=72.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
+++++++.+...+ +.+|||+|||+|..+..+++++ +.+|+|+|+|+.|++.|+++++..+ .++.++++|+.+
T Consensus 14 Ll~e~l~~L~~~~-----g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~ 86 (301)
T 1m6y_A 14 MVREVIEFLKPED-----EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYRE 86 (301)
T ss_dssp THHHHHHHHCCCT-----TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGG
T ss_pred HHHHHHHhcCCCC-----CCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHH
Confidence 4566667666554 8899999999999999999987 6899999999999999999988766 589999999987
Q ss_pred CC--CC---CCcccEEEecc
Q 016981 220 QP--FP---DGQFDLVWSME 234 (379)
Q Consensus 220 ~~--~~---~~~fD~V~~~~ 234 (379)
++ +. .++||.|++..
T Consensus 87 l~~~l~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 87 ADFLLKTLGIEKVDGILMDL 106 (301)
T ss_dssp HHHHHHHTTCSCEEEEEEEC
T ss_pred HHHHHHhcCCCCCCEEEEcC
Confidence 64 21 15799999754
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.1e-10 Score=103.08 Aligned_cols=79 Identities=24% Similarity=0.319 Sum_probs=65.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCH-------HHHHHHHHHHHHcCCCCCeEEEEccCCCC-C-CCC--Ccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSP-------VQAQRANALAAARGLADKVSFQVGDALQQ-P-FPD--GQF 227 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~-------~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~~--~~f 227 (379)
+.+|||+|||+|..+..++.. +.+|+|+|+|+ .+++.|+++.+.+++..++.++.+|+.+. + +++ ++|
T Consensus 84 ~~~VLDlgcG~G~~a~~lA~~-g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~f 162 (258)
T 2r6z_A 84 HPTVWDATAGLGRDSFVLASL-GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKP 162 (258)
T ss_dssp CCCEEETTCTTCHHHHHHHHT-TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCCC
T ss_pred cCeEEEeeCccCHHHHHHHHh-CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCCc
Confidence 689999999999999999997 77999999999 99999998887766655699999998874 3 444 789
Q ss_pred cEEEeccccCC
Q 016981 228 DLVWSMESGEH 238 (379)
Q Consensus 228 D~V~~~~~l~~ 238 (379)
|+|++.-++.+
T Consensus 163 D~V~~dP~~~~ 173 (258)
T 2r6z_A 163 DIVYLDPMYPE 173 (258)
T ss_dssp SEEEECCCC--
T ss_pred cEEEECCCCCC
Confidence 99999766655
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.5e-08 Score=83.92 Aligned_cols=98 Identities=17% Similarity=0.089 Sum_probs=78.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC--CCCeEEEEccCCCC---------------C
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL--ADKVSFQVGDALQQ---------------P 221 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~i~~~~~d~~~~---------------~ 221 (379)
..+|||+||| ..+..+++..+++|+.+|.++...+.|+++++..|+ ..+++++.+|+.+. +
T Consensus 31 a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~ 108 (202)
T 3cvo_A 31 AEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYP 108 (202)
T ss_dssp CSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTT
T ss_pred CCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHH
Confidence 7899999984 677777774368999999999999999999999987 78999999996542 1
Q ss_pred --------C-CCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 222 --------F-PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 222 --------~-~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
. ..++||+|+.-.- .....+..+.+.|+|||.+++-+
T Consensus 109 ~~~~~i~~~~~~~~fDlIfIDg~-----k~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 109 DYPLAVWRTEGFRHPDVVLVDGR-----FRVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp HHHHGGGGCTTCCCCSEEEECSS-----SHHHHHHHHHHHCSSCEEEEETT
T ss_pred HHhhhhhccccCCCCCEEEEeCC-----CchhHHHHHHHhcCCCeEEEEeC
Confidence 1 1378999998652 22466777889999999986633
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-08 Score=104.56 Aligned_cols=118 Identities=19% Similarity=0.217 Sum_probs=87.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc----------------------------------------
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF---------------------------------------- 180 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~---------------------------------------- 180 (379)
+...++...+... +..|||.+||+|.+++.++...
T Consensus 178 LAa~ll~~~~~~~-----~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~ 252 (703)
T 3v97_A 178 LAAAIVMRSGWQP-----GTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGL 252 (703)
T ss_dssp HHHHHHHHTTCCT-----TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCC-----CCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcc
Confidence 4444556655543 7899999999999998877642
Q ss_pred ---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC--CCCCCcccEEEeccccCC-CC---CHHHHHH---H
Q 016981 181 ---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMESGEH-MP---DKSKFVS---E 248 (379)
Q Consensus 181 ---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~~~~l~~-~~---~~~~~l~---~ 248 (379)
...++|+|+++.+++.|+.++...|+...+.|.++|+.++ |...++||+|+++=-... +. +...+++ +
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~ 332 (703)
T 3v97_A 253 AEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGR 332 (703)
T ss_dssp HHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHH
T ss_pred ccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHH
Confidence 1579999999999999999999999977799999999887 333448999999844321 11 2233444 4
Q ss_pred HHHhcCCCCEEEEEe
Q 016981 249 LARVTAPAGTIIIVT 263 (379)
Q Consensus 249 ~~r~LkpgG~l~i~~ 263 (379)
+.+.+.|||.+++..
T Consensus 333 ~lk~~~~g~~~~ilt 347 (703)
T 3v97_A 333 IMKNQFGGWNLSLFS 347 (703)
T ss_dssp HHHHHCTTCEEEEEE
T ss_pred HHHhhCCCCeEEEEe
Confidence 455566899998876
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.86 E-value=5.9e-09 Score=94.58 Aligned_cols=72 Identities=18% Similarity=0.297 Sum_probs=61.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCE----EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAK----CQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~----v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d 216 (379)
.++.+++.++... +.+|||||||+|.++..+++.. .. |+|+|+|+.|++.++++. ..+++++++|
T Consensus 30 i~~~iv~~~~~~~-----~~~VLEIG~G~G~lt~~La~~~-~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D 98 (279)
T 3uzu_A 30 VIDAIVAAIRPER-----GERMVEIGPGLGALTGPVIARL-ATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGD 98 (279)
T ss_dssp HHHHHHHHHCCCT-----TCEEEEECCTTSTTHHHHHHHH-CBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESC
T ss_pred HHHHHHHhcCCCC-----cCEEEEEccccHHHHHHHHHhC-CCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECC
Confidence 5566777776655 8899999999999999999874 45 999999999999999983 2589999999
Q ss_pred CCCCCCC
Q 016981 217 ALQQPFP 223 (379)
Q Consensus 217 ~~~~~~~ 223 (379)
+.+++++
T Consensus 99 ~~~~~~~ 105 (279)
T 3uzu_A 99 ALTFDFG 105 (279)
T ss_dssp GGGCCGG
T ss_pred hhcCChh
Confidence 9998764
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-08 Score=90.12 Aligned_cols=100 Identities=17% Similarity=0.165 Sum_probs=72.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
..++.+++.++... +.+|||+|||+|.++..+++....+|+|+|+|+.+++.++++ . ..+++++++|+.+
T Consensus 18 ~i~~~iv~~~~~~~-----~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~----~~~v~~i~~D~~~ 87 (249)
T 3ftd_A 18 GVLKKIAEELNIEE-----GNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G----DERLEVINEDASK 87 (249)
T ss_dssp HHHHHHHHHTTCCT-----TCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C----CTTEEEECSCTTT
T ss_pred HHHHHHHHhcCCCC-----cCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c----CCCeEEEEcchhh
Confidence 35667777776654 889999999999999999987337999999999999999876 1 2589999999999
Q ss_pred CCCCCCcccEEEeccccCCCCCHHHHHHHHHH
Q 016981 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELAR 251 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r 251 (379)
.++++..-+.++..+.-+++. ..++.++.+
T Consensus 88 ~~~~~~~~~~~vv~NlPy~i~--~~il~~ll~ 117 (249)
T 3ftd_A 88 FPFCSLGKELKVVGNLPYNVA--SLIIENTVY 117 (249)
T ss_dssp CCGGGSCSSEEEEEECCTTTH--HHHHHHHHH
T ss_pred CChhHccCCcEEEEECchhcc--HHHHHHHHh
Confidence 876542113333344444442 334444444
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.8e-08 Score=99.18 Aligned_cols=100 Identities=16% Similarity=0.105 Sum_probs=76.6
Q ss_pred CCEEEEeCCcccHHHHHH---HHHcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYL---AKKFGA--KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l---~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~ 233 (379)
...|||+|||+|.++... +++.+. +|++||-|+ +...|++..+.+++.++|+++.+|+++...| +++|+||+=
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSE 435 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSE 435 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECC
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEE
Confidence 568999999999994443 343333 689999997 6667888888899989999999999998765 789999963
Q ss_pred cccCCC--CCHHHHHHHHHHhcCCCCEEE
Q 016981 234 ESGEHM--PDKSKFVSELARVTAPAGTII 260 (379)
Q Consensus 234 ~~l~~~--~~~~~~l~~~~r~LkpgG~l~ 260 (379)
.+=..+ +....++....|.|||||.++
T Consensus 436 wMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 436 LLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred cCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 322222 223467888889999999864
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-08 Score=95.52 Aligned_cols=162 Identities=14% Similarity=0.127 Sum_probs=104.2
Q ss_pred CCCEEEEeCCcccHHHHHHHHH----------------c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC---
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKK----------------F-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA--- 217 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~----------------~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~--- 217 (379)
...+|+|+||++|..+..+... . ..+|+..|+.......+-+.+.......+..|..+..
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 3578999999999876654432 1 2478999998887776665543210001234555443
Q ss_pred CCCCCCCCcccEEEeccccCCCCCH---------------------------------HHHHHHHHHhcCCCCEEEEEec
Q 016981 218 LQQPFPDGQFDLVWSMESGEHMPDK---------------------------------SKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 218 ~~~~~~~~~fD~V~~~~~l~~~~~~---------------------------------~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
....||++++|+|+++.+||++.+. ..+|+..++.|+|||++++...
T Consensus 131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 3356889999999999999998542 2348888999999999999987
Q ss_pred cCCCCCCCcc---ccchHHHHHHHHHh----------hccCCC-CCCCHHHHHHHHHhCC-CceeEEEec
Q 016981 265 CHRDLAPSEE---SLQPWEQELLKKIC----------DAYYLP-AWCSTADYVKLLQSLS-LEDIKAEDW 319 (379)
Q Consensus 265 ~~~~~~~~~~---~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~~~~~l~~aG-F~~v~~~~~ 319 (379)
..++..+... .+.......+.... ..+..| ++.+.++++..+++.| |++...+.+
T Consensus 211 gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e~~ 280 (359)
T 1m6e_X 211 GRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEAS 280 (359)
T ss_dssp ECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEE
T ss_pred cCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEEEE
Confidence 6655432111 11222222222111 122333 3568999999999996 577766544
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.9e-09 Score=101.27 Aligned_cols=73 Identities=21% Similarity=0.124 Sum_probs=64.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc--CCCCCeEEEEccCCCC-CC-CCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR--GLADKVSFQVGDALQQ-PF-PDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~i~~~~~d~~~~-~~-~~~~fD~V~~~ 233 (379)
+.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.|+++++.. |+ .+++++++|+.+. +. ++++||+|++.
T Consensus 94 g~~VLDLgcG~G~~al~LA~~-g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSK-ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCEEEEeCCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 789999999999999999887 679999999999999999999987 77 6899999999874 32 24689999984
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.82 E-value=1e-08 Score=101.78 Aligned_cols=105 Identities=14% Similarity=0.119 Sum_probs=83.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-------------------CCEEEEEeCCHHHHHHHHHHHHHcCCCC----CeEEEEc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-------------------GAKCQGITLSPVQAQRANALAAARGLAD----KVSFQVG 215 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-------------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~----~i~~~~~ 215 (379)
+.+|||.|||+|.++..+++.. ...++|+|+++.++..|+.++...++.. +..+.++
T Consensus 170 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~g 249 (541)
T 2ar0_A 170 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLG 249 (541)
T ss_dssp TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEES
T ss_pred CCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeC
Confidence 7899999999999998887653 1379999999999999999988777643 2778899
Q ss_pred cCCCCC-CCCCcccEEEeccccCCCCC--------------HHHHHHHHHHhcCCCCEEEEEe
Q 016981 216 DALQQP-FPDGQFDLVWSMESGEHMPD--------------KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 216 d~~~~~-~~~~~fD~V~~~~~l~~~~~--------------~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|....+ ...+.||+|+++-.+..... ...++..+.+.|||||+++++.
T Consensus 250 DtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~ 312 (541)
T 2ar0_A 250 NTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 312 (541)
T ss_dssp CTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence 976543 34578999999755543321 2478999999999999998876
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.4e-08 Score=101.15 Aligned_cols=100 Identities=15% Similarity=0.127 Sum_probs=75.2
Q ss_pred CCEEEEeCCcccHHHHHH---HHHcC-----------CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC-
Q 016981 159 PKNVVDVGCGIGGSSRYL---AKKFG-----------AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP- 223 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l---~~~~~-----------~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~- 223 (379)
...|||+|||+|.++... ++..+ .+|++||.++.+....+.+.. +++.++|+++.+|+++...+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence 568999999999996432 22112 389999999987766666554 67878899999999997653
Q ss_pred ----CCcccEEEeccccCCCCC---HHHHHHHHHHhcCCCCEEE
Q 016981 224 ----DGQFDLVWSMESGEHMPD---KSKFVSELARVTAPAGTII 260 (379)
Q Consensus 224 ----~~~fD~V~~~~~l~~~~~---~~~~l~~~~r~LkpgG~l~ 260 (379)
.++.|+|++=.+ ..+.+ ..+.|..+.+.|||||.++
T Consensus 489 ~~~~~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 489 KDRGFEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHTTCCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccCCCCcccEEEEecc-ccccchhccHHHHHHHHHhCCCCcEEE
Confidence 578999997544 44432 2478888899999999754
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.79 E-value=4.3e-09 Score=94.20 Aligned_cols=96 Identities=23% Similarity=0.241 Sum_probs=68.9
Q ss_pred CEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc-------C-CCCCeEEEEccCCCC-CCCCCcccEE
Q 016981 160 KNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR-------G-LADKVSFQVGDALQQ-PFPDGQFDLV 230 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------~-~~~~i~~~~~d~~~~-~~~~~~fD~V 230 (379)
.+|||+|||+|..+..++.+ +++|+++|+++.+.+.+++.++.. + +..+++++++|+.+. +...++||+|
T Consensus 90 ~~VLDl~~G~G~dal~lA~~-g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV 168 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred CEEEEcCCcCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEE
Confidence 89999999999999999998 679999999998877766655432 1 224699999998763 3223479999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCC
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAG 257 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG 257 (379)
++.-.+.+ .....++++..++|++.+
T Consensus 169 ~lDP~y~~-~~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 169 YLDPMFPH-KQKSALVKKEMRVFQSLV 194 (258)
T ss_dssp EECCCCCC-CCC-----HHHHHHHHHS
T ss_pred EEcCCCCC-cccchHHHHHHHHHHHhh
Confidence 98876655 333456667777777755
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.76 E-value=9.6e-09 Score=92.01 Aligned_cols=127 Identities=19% Similarity=0.186 Sum_probs=85.5
Q ss_pred CCEEEEeCCcccHHHHHHHHH-------cC------CEEEEEeCCH---HHHH-----------HHHHHHHHcC------
Q 016981 159 PKNVVDVGCGIGGSSRYLAKK-------FG------AKCQGITLSP---VQAQ-----------RANALAAARG------ 205 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~-------~~------~~v~gvD~s~---~~~~-----------~a~~~~~~~~------ 205 (379)
..+|||+|+|+|..+..+++. .. .+++++|..| .++. .|++.++...
T Consensus 61 ~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~ 140 (257)
T 2qy6_A 61 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC 140 (257)
T ss_dssp EEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEE
T ss_pred CCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccch
Confidence 679999999999988776654 21 4899999776 4444 5566555310
Q ss_pred ----C---CCCeEEEEccCCC-CCC-CC---CcccEEEecc-ccCCCCC--HHHHHHHHHHhcCCCCEEEEEeccCCCCC
Q 016981 206 ----L---ADKVSFQVGDALQ-QPF-PD---GQFDLVWSME-SGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLA 270 (379)
Q Consensus 206 ----~---~~~i~~~~~d~~~-~~~-~~---~~fD~V~~~~-~l~~~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~ 270 (379)
+ ..++++..+|+.+ ++. ++ ..||+|+.-. .-..-++ ...+++.++++|||||.|+. ++.
T Consensus 141 ~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t--ysa---- 214 (257)
T 2qy6_A 141 HRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT--FTS---- 214 (257)
T ss_dssp EEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE--SCC----
T ss_pred hheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE--EeC----
Confidence 1 1357788999876 342 22 2799999742 1111222 26899999999999999874 221
Q ss_pred CCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEec
Q 016981 271 PSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319 (379)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 319 (379)
...+++.|+++||++.....+
T Consensus 215 ----------------------------a~~vrr~L~~aGF~v~~~~g~ 235 (257)
T 2qy6_A 215 ----------------------------AGFVRRGLQEAGFTMQKRKGF 235 (257)
T ss_dssp ----------------------------BHHHHHHHHHHTEEEEEECCS
T ss_pred ----------------------------CHHHHHHHHHCCCEEEeCCCC
Confidence 124678889999998765433
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.70 E-value=8.5e-08 Score=86.84 Aligned_cols=105 Identities=16% Similarity=0.191 Sum_probs=83.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc--C--CCCCeEEEEccCCCC-CCCCCcccEEEe
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR--G--LADKVSFQVGDALQQ-PFPDGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--~--~~~~i~~~~~d~~~~-~~~~~~fD~V~~ 232 (379)
+.+||-||.|.|..++.+++.. ..+|+.+|+++..++.+++.+... + -.++++++.+|.... .-..++||+|+.
T Consensus 84 pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi~ 163 (294)
T 3o4f_A 84 AKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIIS 163 (294)
T ss_dssp CCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEEE
T ss_pred CCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEEE
Confidence 7899999999999999999865 468999999999999999987542 1 136899999998775 344678999996
Q ss_pred ccccCCCC----CHHHHHHHHHHhcCCCCEEEEEe
Q 016981 233 MESGEHMP----DKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 233 ~~~l~~~~----~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
-..=..-+ -..++++.+++.|+|||.++...
T Consensus 164 D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 164 DCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp SCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred eCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 43211111 11689999999999999998865
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.70 E-value=9.8e-09 Score=91.79 Aligned_cols=87 Identities=17% Similarity=0.159 Sum_probs=64.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCE--EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAK--CQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~--v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
.++.+++.++..+ +.+|||||||+|.++. +. + +.+ |+|+|+++.|++.+++++... ++++++++|+.
T Consensus 9 i~~~iv~~~~~~~-----~~~VLEIG~G~G~lt~-l~-~-~~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~ 77 (252)
T 1qyr_A 9 VIDSIVSAINPQK-----GQAMVEIGPGLAALTE-PV-G-ERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAM 77 (252)
T ss_dssp HHHHHHHHHCCCT-----TCCEEEECCTTTTTHH-HH-H-TTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGG
T ss_pred HHHHHHHhcCCCC-----cCEEEEECCCCcHHHH-hh-h-CCCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchh
Confidence 5566667666654 7899999999999999 65 4 456 999999999999999876432 47999999999
Q ss_pred CCCCCC-----CcccEEEeccccCCC
Q 016981 219 QQPFPD-----GQFDLVWSMESGEHM 239 (379)
Q Consensus 219 ~~~~~~-----~~fD~V~~~~~l~~~ 239 (379)
++++++ +..|.|+++- -+++
T Consensus 78 ~~~~~~~~~~~~~~~~vvsNl-PY~i 102 (252)
T 1qyr_A 78 TFNFGELAEKMGQPLRVFGNL-PYNI 102 (252)
T ss_dssp GCCHHHHHHHHTSCEEEEEEC-CTTT
T ss_pred hCCHHHhhcccCCceEEEECC-CCCc
Confidence 877542 1235666553 3344
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.67 E-value=7.4e-08 Score=95.44 Aligned_cols=104 Identities=19% Similarity=0.201 Sum_probs=80.3
Q ss_pred CEEEEeCCcccHHHHHHHHHc----------------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-C
Q 016981 160 KNVVDVGCGIGGSSRYLAKKF----------------GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-F 222 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~----------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~ 222 (379)
.+|||.+||||.+...+++.. ...++|+|+++.++..|+.++...|+..++.+.++|....+ +
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 399999999999988775432 34799999999999999999988887655555778866543 4
Q ss_pred CCCcccEEEeccccCC-------------------------CCC----HHHHHHHHHHhcCCCCEEEEEe
Q 016981 223 PDGQFDLVWSMESGEH-------------------------MPD----KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 223 ~~~~fD~V~~~~~l~~-------------------------~~~----~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
++.+||+|+++=-+.. ++. ...++..+.+.|||||+++++.
T Consensus 326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVl 395 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLL 395 (544)
T ss_dssp TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEe
Confidence 5678999999644432 111 1368999999999999988876
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.2e-07 Score=84.23 Aligned_cols=116 Identities=14% Similarity=0.131 Sum_probs=75.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
.+.++.+...+. ++.+|||+|||+|.|+..++++.+ ..|+|+|++..+....... ...+ .++.....+++.
T Consensus 62 KL~ei~ek~~l~-----~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g--~~ii~~~~~~dv 133 (277)
T 3evf_A 62 KLRWFHERGYVK-----LEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLG--WNIITFKDKTDI 133 (277)
T ss_dssp HHHHHHHTTSSC-----CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTT--GGGEEEECSCCT
T ss_pred HHHHHHHhCCCC-----CCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCC--CCeEEEecccee
Confidence 455555553333 378999999999999999887643 4688888874331100000 0001 145556666655
Q ss_pred CCCCCCcccEEEeccccCCCCCH-------HHHHHHHHHhcCCC-CEEEEEecc
Q 016981 220 QPFPDGQFDLVWSMESGEHMPDK-------SKFVSELARVTAPA-GTIIIVTWC 265 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~-------~~~l~~~~r~Lkpg-G~l~i~~~~ 265 (379)
..+++++||+|++..+.. .... ..+|+.+.++|||| |.+++-.+.
T Consensus 134 ~~l~~~~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 134 HRLEPVKCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp TTSCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred hhcCCCCccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 567778999999976555 3332 13568889999999 999996643
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.5e-07 Score=89.67 Aligned_cols=106 Identities=16% Similarity=0.104 Sum_probs=84.2
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEccCCCC--C-CCCCcccE
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF----GAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQ--P-FPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~--~-~~~~~fD~ 229 (379)
++.+|||.+||+|.+...+++.. ...++|+|+++.+...|+.++...|+. +++.+.++|.... | .....||+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 47899999999999998888774 468999999999999999998888774 4688999998765 3 34678999
Q ss_pred EEeccccCC-------------------CC---C-HHHHHHHHHHhcC-CCCEEEEEe
Q 016981 230 VWSMESGEH-------------------MP---D-KSKFVSELARVTA-PAGTIIIVT 263 (379)
Q Consensus 230 V~~~~~l~~-------------------~~---~-~~~~l~~~~r~Lk-pgG~l~i~~ 263 (379)
|+++=-+.. ++ + ...++..+.+.|| |||++.++.
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~Vl 358 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVL 358 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEe
Confidence 998732210 10 0 1348999999999 999998876
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.41 E-value=8.4e-07 Score=80.13 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=80.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc------CCEEEEEeCCHH--------------------------HHHHHHHHHHHcCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF------GAKCQGITLSPV--------------------------QAQRANALAAARGL 206 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~------~~~v~gvD~s~~--------------------------~~~~a~~~~~~~~~ 206 (379)
+.+|||+|+..|..+..++... +.+|+++|.... .++.+++++++.|+
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl 186 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL 186 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence 6799999999999988887643 468999996421 46778999999998
Q ss_pred C-CCeEEEEccCCC-CC-CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 207 A-DKVSFQVGDALQ-QP-FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 207 ~-~~i~~~~~d~~~-~~-~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
. ++++++.+|+.+ ++ +++++||+|+.-.-. .......|..+...|+|||.+++-++
T Consensus 187 ~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 187 LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--YESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp CSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--HHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--cccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 4 899999999866 33 445789999976532 12235789999999999999888553
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.37 E-value=8.6e-07 Score=79.24 Aligned_cols=85 Identities=18% Similarity=0.212 Sum_probs=69.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
+++++++.+.+.+ +..+||.+||.|..+..++++ +++|+|+|.++.+++.|++ +.. +++.++++|+.++
T Consensus 10 Ll~e~le~L~~~~-----gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l 78 (285)
T 1wg8_A 10 LYQEALDLLAVRP-----GGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHL 78 (285)
T ss_dssp THHHHHHHHTCCT-----TCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGH
T ss_pred HHHHHHHhhCCCC-----CCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchH
Confidence 5677788777654 889999999999999999998 7899999999999999998 633 4899999999876
Q ss_pred C-----CCCCcccEEEecccc
Q 016981 221 P-----FPDGQFDLVWSMESG 236 (379)
Q Consensus 221 ~-----~~~~~fD~V~~~~~l 236 (379)
+ ...+++|.|++...+
T Consensus 79 ~~~L~~~g~~~vDgIL~DLGv 99 (285)
T 1wg8_A 79 KRHLAALGVERVDGILADLGV 99 (285)
T ss_dssp HHHHHHTTCSCEEEEEEECSC
T ss_pred HHHHHHcCCCCcCEEEeCCcc
Confidence 3 223579999975443
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.8e-07 Score=82.01 Aligned_cols=116 Identities=17% Similarity=0.078 Sum_probs=74.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
.+.++.+...+. ++.+|||+|||.|.|+..++++.+ ..|+|+|++..+...+... ...+ .++.....++..
T Consensus 78 KL~ei~eK~~Lk-----~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g--~~ii~~~~~~dv 149 (282)
T 3gcz_A 78 KLRWMEERGYVK-----PTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLG--WNLIRFKDKTDV 149 (282)
T ss_dssp HHHHHHHTTSCC-----CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTT--GGGEEEECSCCG
T ss_pred HHHHHHHhcCCC-----CCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCC--CceEEeeCCcch
Confidence 455555544444 378999999999999999887653 4789999986532221100 0001 133344433333
Q ss_pred CCCCCCcccEEEeccccCCCCCH-------HHHHHHHHHhcCCC--CEEEEEecc
Q 016981 220 QPFPDGQFDLVWSMESGEHMPDK-------SKFVSELARVTAPA--GTIIIVTWC 265 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~-------~~~l~~~~r~Lkpg--G~l~i~~~~ 265 (379)
..++.+++|+|++..... .... ..+|.-+.++|+|| |.+++-.+.
T Consensus 150 ~~l~~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 150 FNMEVIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp GGSCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred hhcCCCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 345578899999976665 4332 13566678999999 999997653
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.33 E-value=1e-06 Score=89.20 Aligned_cols=106 Identities=8% Similarity=0.014 Sum_probs=74.9
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcC----CEEEEEeCCHHHHHHH--HHHHHH----cCCCCCeEEEEccCCCC-CCCCCc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFG----AKCQGITLSPVQAQRA--NALAAA----RGLADKVSFQVGDALQQ-PFPDGQ 226 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~----~~v~gvD~s~~~~~~a--~~~~~~----~~~~~~i~~~~~d~~~~-~~~~~~ 226 (379)
++.+|||.|||+|.++..+++..+ .+++|+|+++.+++.| +.++.. .+. ....+...|+... +...+.
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi-~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSN-NAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTT-BCCEEECCCGGGCCGGGGTT
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCC-CcceEEecchhcccccccCC
Confidence 378999999999999999988753 4799999999999999 433322 122 1234555565543 234578
Q ss_pred ccEEEeccccCC-CC---------------------------C-HHHHHHHHHHhcCCCCEEEEEec
Q 016981 227 FDLVWSMESGEH-MP---------------------------D-KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 227 fD~V~~~~~l~~-~~---------------------------~-~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
||+|+++=-+.. .. + ...++..+.+.|+|||++++...
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 999999755421 11 1 13467889999999999998763
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.7e-06 Score=80.98 Aligned_cols=108 Identities=17% Similarity=0.165 Sum_probs=83.4
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCC-----CCeEEEEccCCCCC-CCCCcccEE
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLA-----DKVSFQVGDALQQP-FPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~i~~~~~d~~~~~-~~~~~fD~V 230 (379)
++.+|||+.+|.|.=+..++... +..|+++|+++.-++..++++++.+.. .++.+...|...++ ...+.||.|
T Consensus 148 pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~V 227 (359)
T 4fzv_A 148 PGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRV 227 (359)
T ss_dssp TTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEEE
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCCEE
Confidence 48999999999999999998875 457999999999999999999877642 46888888887753 345789999
Q ss_pred Ee----cc----ccCCCCC----------------HHHHHHHHHHhcCCCCEEEEEecc
Q 016981 231 WS----ME----SGEHMPD----------------KSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 231 ~~----~~----~l~~~~~----------------~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
++ +. ++..-++ ..++|..+.+.|||||+|+.++-+
T Consensus 228 LlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCS 286 (359)
T 4fzv_A 228 LVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCS 286 (359)
T ss_dssp EEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred EECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Confidence 95 22 1111111 136788899999999999988743
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-06 Score=70.02 Aligned_cols=88 Identities=17% Similarity=0.163 Sum_probs=64.4
Q ss_pred CCEEEEeCCccc-HHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCC-CcccEEEecccc
Q 016981 159 PKNVVDVGCGIG-GSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPD-GQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG-~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~fD~V~~~~~l 236 (379)
+.+|||||||.| ..+..|++..+..|+++|+++..++ ++..|+.+....- +.||+|++...
T Consensus 36 ~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~----------------~v~dDiF~P~~~~Y~~~DLIYsirP- 98 (153)
T 2k4m_A 36 GTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG----------------IVRDDITSPRMEIYRGAALIYSIRP- 98 (153)
T ss_dssp SSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT----------------EECCCSSSCCHHHHTTEEEEEEESC-
T ss_pred CCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc----------------eEEccCCCCcccccCCcCEEEEcCC-
Confidence 679999999999 6999999855889999999985432 7888887743211 47999987543
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEeccCC
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 267 (379)
-++....+.++++. -|.-++|.....+
T Consensus 99 --P~El~~~i~~lA~~--v~adliI~pL~~E 125 (153)
T 2k4m_A 99 --PAEIHSSLMRVADA--VGARLIIKPLTGE 125 (153)
T ss_dssp --CTTTHHHHHHHHHH--HTCEEEEECBTTB
T ss_pred --CHHHHHHHHHHHHH--cCCCEEEEcCCCC
Confidence 34557777777774 3667777665443
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=3e-06 Score=78.76 Aligned_cols=86 Identities=16% Similarity=0.136 Sum_probs=65.3
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
++.+|||+||+.|.|+..++++ ++.|++||+.+ |-.... . .+++.+...|+.....+.++||+|+|-.+
T Consensus 211 ~G~~vlDLGAaPGGWT~~l~~r-g~~V~aVD~~~-l~~~l~----~---~~~V~~~~~d~~~~~~~~~~~D~vvsDm~-- 279 (375)
T 4auk_A 211 NGMWAVDLGACPGGWTYQLVKR-NMWVYSVDNGP-MAQSLM----D---TGQVTWLREDGFKFRPTRSNISWMVCDMV-- 279 (375)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCEEEEECSSC-CCHHHH----T---TTCEEEECSCTTTCCCCSSCEEEEEECCS--
T ss_pred CCCEEEEeCcCCCHHHHHHHHC-CCEEEEEEhhh-cChhhc----c---CCCeEEEeCccccccCCCCCcCEEEEcCC--
Confidence 5999999999999999999988 78999999864 211111 1 25899999999887666678999998643
Q ss_pred CCCCHHHHHHHHHHhcCCC
Q 016981 238 HMPDKSKFVSELARVTAPA 256 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~Lkpg 256 (379)
.++..++.-+.+.|..|
T Consensus 280 --~~p~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 280 --EKPAKVAALMAQWLVNG 296 (375)
T ss_dssp --SCHHHHHHHHHHHHHTT
T ss_pred --CChHHhHHHHHHHHhcc
Confidence 34566666666666555
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=4.5e-06 Score=74.69 Aligned_cols=116 Identities=17% Similarity=0.154 Sum_probs=71.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
.+.++.+. .+-. ++.+|||+||++|.|+..++++.+ ..|+|+|+...+...... ... ...++.....++..
T Consensus 69 KL~ei~ek-~l~~----~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~--~~~~iv~~~~~~di 140 (300)
T 3eld_A 69 KIRWLHER-GYLR----ITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQT--LGWNIVKFKDKSNV 140 (300)
T ss_dssp HHHHHHHH-TSCC----CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCB--TTGGGEEEECSCCT
T ss_pred HHHHHHHh-CCCC----CCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccc--cCCceEEeecCcee
Confidence 44455555 4332 589999999999999999998643 478999997532111000 000 00123333333322
Q ss_pred CCCCCCcccEEEeccccCCCCCH-------HHHHHHHHHhcCCC-CEEEEEecc
Q 016981 220 QPFPDGQFDLVWSMESGEHMPDK-------SKFVSELARVTAPA-GTIIIVTWC 265 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~-------~~~l~~~~r~Lkpg-G~l~i~~~~ 265 (379)
..+..+.+|+|++..... ...+ ..+|.-+.++|+|| |.|++-.+.
T Consensus 141 ~~l~~~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 141 FTMPTEPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp TTSCCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred eecCCCCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 234567899999865555 4332 24566778999999 999997654
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.1e-05 Score=71.90 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=76.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-cCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DAL 218 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~ 218 (379)
.+.++.+...+.+ +.+|||+||++|.|+.+++.+.+ ..|+|+|+...-.+.- ...+..++ +.+.|... |+.
T Consensus 82 KL~ei~~~~~l~~-----~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~w-~lV~~~~~~Dv~ 154 (321)
T 3lkz_A 82 KLRWLVERRFLEP-----VGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYGW-NIVTMKSGVDVF 154 (321)
T ss_dssp HHHHHHHTTSCCC-----CEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTTG-GGEEEECSCCTT
T ss_pred HHHHHHHhcCCCC-----CCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcCC-cceEEEeccCHh
Confidence 5555555544443 78999999999999998888764 4699999976511000 00001122 24777776 876
Q ss_pred CCCCCCCcccEEEeccccCCCCCH-------HHHHHHHHHhcCCC-CEEEEEecc
Q 016981 219 QQPFPDGQFDLVWSMESGEHMPDK-------SKFVSELARVTAPA-GTIIIVTWC 265 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~-------~~~l~~~~r~Lkpg-G~l~i~~~~ 265 (379)
.++. .++|+|+|-.. +.-+++ .++|.-+.+.|++| |-+++-.++
T Consensus 155 ~l~~--~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~ 206 (321)
T 3lkz_A 155 YRPS--ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLC 206 (321)
T ss_dssp SSCC--CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred hCCC--CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcC
Confidence 6642 66999998766 665664 23566667899999 888886544
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=4.9e-06 Score=77.71 Aligned_cols=106 Identities=13% Similarity=0.100 Sum_probs=78.2
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc-----CC--CCCeEEEEccCCCC----CCCCCc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR-----GL--ADKVSFQVGDALQQ----PFPDGQ 226 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~--~~~i~~~~~d~~~~----~~~~~~ 226 (379)
++.+||=||.|.|..++.+.+....+|+.+|+++..++.+++.+... .. .++++++.+|+... .-..++
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~ 284 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE 284 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence 36899999999999999999865678999999999999999875321 01 13588899997543 112467
Q ss_pred ccEEEeccccCCC-CC---------HHHHHHHHHHhcCCCCEEEEEe
Q 016981 227 FDLVWSMESGEHM-PD---------KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 227 fD~V~~~~~l~~~-~~---------~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
||+|+.-..-... .+ ..++++.+++.|+|||.++...
T Consensus 285 yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 285 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 9999975322111 11 1567889999999999988754
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=98.07 E-value=7.6e-05 Score=69.20 Aligned_cols=150 Identities=14% Similarity=0.040 Sum_probs=102.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--------------------CCCCeEEEEccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--------------------LADKVSFQVGDA 217 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--------------------~~~~i~~~~~d~ 217 (379)
...|+.+|||.......+.... +..++-+|. |..++.-++.+...+ .+++..++.+|+
T Consensus 98 ~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 98 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 6789999999999998888754 567888888 888887777776642 136788999999
Q ss_pred CCCC--------C-CCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHH
Q 016981 218 LQQP--------F-PDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK 286 (379)
Q Consensus 218 ~~~~--------~-~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (379)
.+.. . ..+...++++-.++.+++.. .++++.+.+.+ |+|.+++.+...+.. ....+...+...+..
T Consensus 177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~--~~~~fg~~m~~~l~~ 253 (334)
T 1rjd_A 177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQ--PNDRFGAIMQSNLKE 253 (334)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCS--TTCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCC--CcchHHHHHHHHhhc
Confidence 8732 1 23567889999999999643 67888888877 788887777654421 112222222122222
Q ss_pred -Hhh-ccCCCCCCCHHHHHHHHHhCCCc
Q 016981 287 -ICD-AYYLPAWCSTADYVKLLQSLSLE 312 (379)
Q Consensus 287 -~~~-~~~~~~~~~~~~~~~~l~~aGF~ 312 (379)
... ......+.++++..+.|.++||+
T Consensus 254 ~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 254 SRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred ccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 111 11122356899999999999997
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=6.8e-07 Score=102.75 Aligned_cols=146 Identities=16% Similarity=0.104 Sum_probs=72.8
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CCCCCcccEE
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFG------AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~------~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~V 230 (379)
+..+|||||.|+|..+..+.+..+ .+++.+|+|+...+.|+++++.. ++.....|..+. ++..++||+|
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~----di~~~~~d~~~~~~~~~~~ydlv 1315 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL----HVTQGQWDPANPAPGSLGKADLL 1315 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH----TEEEECCCSSCCCC-----CCEE
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc----ccccccccccccccCCCCceeEE
Confidence 468999999999987766655542 37999999999888888887653 244333344332 3445789999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCC
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLS 310 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 310 (379)
++..+++..++....+.+++++|||||++++.+....... .....+ +... .. ....+.+.++|.++|+++|
T Consensus 1316 ia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~~~~~~~---g~~~~~----~~~~-~r-~~~~~~~~~~w~~~l~~~g 1386 (2512)
T 2vz8_A 1316 VCNCALATLGDPAVAVGNMAATLKEGGFLLLHTLLAGHPL---GEMVGF----LTSP-EQ-GGRHLLSQDQWESLFAGAS 1386 (2512)
T ss_dssp EEECC--------------------CCEEEEEEC-----------------------------------CTTTTSSTTTT
T ss_pred EEcccccccccHHHHHHHHHHhcCCCcEEEEEeccccccc---cccccc----cccc-cc-cCCcccCHHHHHHHHHhCC
Confidence 9999998888889999999999999999998774321100 000000 0000 00 0012346778888999999
Q ss_pred CceeEE
Q 016981 311 LEDIKA 316 (379)
Q Consensus 311 F~~v~~ 316 (379)
|..+..
T Consensus 1387 f~~~~~ 1392 (2512)
T 2vz8_A 1387 LHLVAL 1392 (2512)
T ss_dssp EEEEEE
T ss_pred Cceeee
Confidence 988765
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00017 Score=71.22 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=77.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--------------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC--
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--------------GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-- 222 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-- 222 (379)
+.+|+|-+||||.+...+.+.. ...++|+|+++.+...|+-++--.|.. ...+..+|....+.
T Consensus 218 ~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~-~~~I~~~dtL~~~~~~ 296 (530)
T 3ufb_A 218 GESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE-YPRIDPENSLRFPLRE 296 (530)
T ss_dssp TCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS-CCEEECSCTTCSCGGG
T ss_pred CCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc-cccccccccccCchhh
Confidence 7899999999999987766533 246999999999999999887777663 45667778665442
Q ss_pred --CCCcccEEEeccccCCCC---------------CH-HHHHHHHHHhcC-------CCCEEEEEec
Q 016981 223 --PDGQFDLVWSMESGEHMP---------------DK-SKFVSELARVTA-------PAGTIIIVTW 264 (379)
Q Consensus 223 --~~~~fD~V~~~~~l~~~~---------------~~-~~~l~~~~r~Lk-------pgG~l~i~~~ 264 (379)
....||+|+++=-+.--. +. ..++..+.+.|| |||++.++..
T Consensus 297 ~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP 363 (530)
T 3ufb_A 297 MGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP 363 (530)
T ss_dssp CCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred hcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence 235799999986553211 11 346777888886 7999988763
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.91 E-value=4.6e-05 Score=69.66 Aligned_cols=58 Identities=26% Similarity=0.239 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 204 (379)
.+++.++.... . ++..|||++||+|.++..+++. |.+++|+|+++.+++.|++++...
T Consensus 223 ~l~~~~i~~~~-~-----~~~~vlD~f~GsGt~~~~a~~~-g~~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 223 ELAERLVRMFS-F-----VGDVVLDPFAGTGTTLIAAARW-GRRALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp HHHHHHHHHHC-C-----TTCEEEETTCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-C-----CCCEEEECCCCCCHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 45666666554 2 3889999999999999998876 789999999999999999998765
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00014 Score=62.59 Aligned_cols=115 Identities=18% Similarity=0.200 Sum_probs=77.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-cC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DA 217 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~ 217 (379)
..+.++.+...+.+ +.+|||+||++|.|+.+++.+.+ .+|+|+|+-..-.+. -...+..|+ +.+.|..+ |+
T Consensus 65 ~KL~ei~ek~~l~~-----g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~-P~~~~s~gw-n~v~fk~gvDv 137 (267)
T 3p8z_A 65 AKLQWFVERNMVIP-----EGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEE-PVPMSTYGW-NIVKLMSGKDV 137 (267)
T ss_dssp HHHHHHHHTTSSCC-----CEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCCTTT-TSEEEECSCCG
T ss_pred HHHHHHHHhcCCCC-----CCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccC-cchhhhcCc-CceEEEeccce
Confidence 35556666554444 88999999999999999888774 469999996542210 000112334 46899988 97
Q ss_pred CCCCCCCCcccEEEeccccCCCCCH-------HHHHHHHHHhcCCCCEEEEEecc
Q 016981 218 LQQPFPDGQFDLVWSMESGEHMPDK-------SKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 218 ~~~~~~~~~fD~V~~~~~l~~~~~~-------~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
..++ ..++|.|+|-..= .-+++ .++|+-+.+.|++ |-+++-.++
T Consensus 138 ~~~~--~~~~DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~ 188 (267)
T 3p8z_A 138 FYLP--PEKCDTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLN 188 (267)
T ss_dssp GGCC--CCCCSEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESC
T ss_pred eecC--CccccEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEcc
Confidence 6654 3669999986554 33443 2356666789999 777775544
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=3.6e-05 Score=67.40 Aligned_cols=98 Identities=20% Similarity=0.268 Sum_probs=61.5
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcC-CEEEEEeCCHH--HHHHHHHHHHHcCCCCCe---EEEEc-cCCCCCCCCCcccEE
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPV--QAQRANALAAARGLADKV---SFQVG-DALQQPFPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~--~~~~a~~~~~~~~~~~~i---~~~~~-d~~~~~~~~~~fD~V 230 (379)
++.+|||+||+.|.|+..++++.+ ..|.|.++... .... ...+.++ .|..+ |+.+++ ...+|+|
T Consensus 73 pg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~-------~~~~~Gv~~i~~~~G~Df~~~~--~~~~DvV 143 (269)
T 2px2_A 73 PIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPM-------LMQSYGWNIVTMKSGVDVFYKP--SEISDTL 143 (269)
T ss_dssp CCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCC-------CCCSTTGGGEEEECSCCGGGSC--CCCCSEE
T ss_pred CCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCC-------cccCCCceEEEeeccCCccCCC--CCCCCEE
Confidence 599999999999999999998721 13334433322 1000 0000233 44446 988753 4679999
Q ss_pred EeccccCCCCCH----H---HHHHHHHHhcCCCC-EEEEEecc
Q 016981 231 WSMESGEHMPDK----S---KFVSELARVTAPAG-TIIIVTWC 265 (379)
Q Consensus 231 ~~~~~l~~~~~~----~---~~l~~~~r~LkpgG-~l~i~~~~ 265 (379)
+|-..-. ..++ . .+|.-+.++|+||| .+++-.+.
T Consensus 144 LSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 144 LCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp EECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred EeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 9865543 4332 1 24666679999999 88886654
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.001 Score=60.86 Aligned_cols=150 Identities=13% Similarity=0.002 Sum_probs=96.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC--CCCeEEEEccCCCC--------CCCCCccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL--ADKVSFQVGDALQQ--------PFPDGQFD 228 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~i~~~~~d~~~~--------~~~~~~fD 228 (379)
...|+++|||-=..+..+...-+..|+-+| .|..++..++.+...+. +.+..++.+|+.+. .+.....-
T Consensus 103 ~~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~Pt 181 (310)
T 2uyo_A 103 IRQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSART 181 (310)
T ss_dssp CCEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCE
T ss_pred CCeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCCE
Confidence 457999999987765555421146899999 49999999998876432 35688888998761 02223456
Q ss_pred EEEeccccCCCCC--HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHH-HHHhhcc--------CCCCCC
Q 016981 229 LVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELL-KKICDAY--------YLPAWC 297 (379)
Q Consensus 229 ~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~ 297 (379)
++++-.+++++++ ...+++.+...+.||+.+++....... +. .. ....... ....... ......
T Consensus 182 ~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~~--~~--~~-~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 256 (310)
T 2uyo_A 182 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHG--DE--WR-EQMQLRFRRVSDALGFEQAVDVQELIYHD 256 (310)
T ss_dssp EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTC--SH--HH-HHHHHHHHHHHC-----------CCTTCC
T ss_pred EEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCCC--cc--hh-HHHHHHHHHHHHHcCCcCCCCccccccCC
Confidence 7888889999975 367899999988999988886643321 10 00 0111112 1111111 111122
Q ss_pred C-HHHHHHHHHhCCCcee
Q 016981 298 S-TADYVKLLQSLSLEDI 314 (379)
Q Consensus 298 ~-~~~~~~~l~~aGF~~v 314 (379)
+ .++..+.|.+.||+.+
T Consensus 257 ~~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 257 ENRAVVADWLNRHGWRAT 274 (310)
T ss_dssp TTCCCHHHHHTTTTEEEE
T ss_pred CChHHHHHHHHHCcCccc
Confidence 5 7889999999999987
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00011 Score=67.13 Aligned_cols=87 Identities=16% Similarity=0.141 Sum_probs=69.2
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
++++.++.+.+.+ +..++|..||.|..+..++++. .++|+|+|.++.+++.|+ ++ ...++.++.+++.
T Consensus 45 Ll~Evl~~L~i~p-----ggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~ 114 (347)
T 3tka_A 45 LLDEAVNGLNIRP-----DGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFS 114 (347)
T ss_dssp TTHHHHHHTCCCT-----TCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGG
T ss_pred cHHHHHHhhCCCC-----CCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHH
Confidence 6788888887665 8999999999999999999886 469999999999999984 43 1368999999987
Q ss_pred CCC--CC----CCcccEEEeccccC
Q 016981 219 QQP--FP----DGQFDLVWSMESGE 237 (379)
Q Consensus 219 ~~~--~~----~~~fD~V~~~~~l~ 237 (379)
++. ++ .+++|.|+....+.
T Consensus 115 ~l~~~L~~~g~~~~vDgILfDLGVS 139 (347)
T 3tka_A 115 ALGEYVAERDLIGKIDGILLDLGVS 139 (347)
T ss_dssp GHHHHHHHTTCTTCEEEEEEECSCC
T ss_pred HHHHHHHhcCCCCcccEEEECCccC
Confidence 752 11 13699998766554
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00053 Score=61.23 Aligned_cols=59 Identities=20% Similarity=0.223 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG 205 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~ 205 (379)
.+++.++.... . ++..|||..||+|..+....+. |.+++|+|+++..++.|+++++..+
T Consensus 200 ~l~~~~i~~~~-~-----~~~~vlD~f~GsGtt~~~a~~~-gr~~ig~e~~~~~~~~~~~r~~~~~ 258 (260)
T 1g60_A 200 DLIERIIRASS-N-----PNDLVLDCFMGSGTTAIVAKKL-GRNFIGCDMNAEYVNQANFVLNQLE 258 (260)
T ss_dssp HHHHHHHHHHC-C-----TTCEEEESSCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhC-C-----CCCEEEECCCCCCHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHhcc
Confidence 35666666543 2 4889999999999999988775 8899999999999999999987543
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0017 Score=57.87 Aligned_cols=111 Identities=15% Similarity=0.153 Sum_probs=70.2
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEeCC------cccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCe
Q 016981 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGC------GIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKV 210 (379)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~vLDiGc------GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i 210 (379)
.....++++.+......-+.+++|||+|+ -.|.+ .+.+.. ++.|+++|+.+-.. ...
T Consensus 90 v~kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s------------da~- 154 (344)
T 3r24_A 90 VAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS------------DAD- 154 (344)
T ss_dssp HHHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC------------SSS-
T ss_pred HHHHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc------------CCC-
Confidence 34566777766443333346899999996 44553 233333 35999999976321 112
Q ss_pred EEEEccCCCCCCCCCcccEEEecccc---CCC--CC-----H-HHHHHHHHHhcCCCCEEEEEecc
Q 016981 211 SFQVGDALQQPFPDGQFDLVWSMESG---EHM--PD-----K-SKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 211 ~~~~~d~~~~~~~~~~fD~V~~~~~l---~~~--~~-----~-~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
.++++|...... .++||+|++-..- .+. .. . +.++.-+.++|+|||.|++-.+-
T Consensus 155 ~~IqGD~~~~~~-~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQ 219 (344)
T 3r24_A 155 STLIGDCATVHT-ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE 219 (344)
T ss_dssp EEEESCGGGEEE-SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred eEEEcccccccc-CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEec
Confidence 458999765432 4789999974322 221 11 2 55666678899999999997653
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0009 Score=60.68 Aligned_cols=126 Identities=15% Similarity=0.120 Sum_probs=78.5
Q ss_pred CCEEEEeCCcccHHHHHHHH----Hc-CC--EEEEEeCCH--------H-HHHHHHHHHHHcC-C-CC--CeEEEEccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAK----KF-GA--KCQGITLSP--------V-QAQRANALAAARG-L-AD--KVSFQVGDAL 218 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~----~~-~~--~v~gvD~s~--------~-~~~~a~~~~~~~~-~-~~--~i~~~~~d~~ 218 (379)
.-+|||+|-|||........ .. .. +++.+|..+ . ..+..+....... . .. .+.+..+|+.
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~ 176 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR 176 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence 56899999999986543332 11 23 456676421 1 1112222222210 0 12 3467778876
Q ss_pred CC-C-CCCCcccEEEeccccCCCCCH----HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccC
Q 016981 219 QQ-P-FPDGQFDLVWSMESGEHMPDK----SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYY 292 (379)
Q Consensus 219 ~~-~-~~~~~fD~V~~~~~l~~~~~~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (379)
+. + +.+..||+|+.- .+..-.+| ..+++.++++++|||.++- ++
T Consensus 177 ~~l~~l~~~~~Da~flD-gFsP~kNPeLWs~e~f~~l~~~~~pgg~laT--Yt--------------------------- 226 (308)
T 3vyw_A 177 KRIKEVENFKADAVFHD-AFSPYKNPELWTLDFLSLIKERIDEKGYWVS--YS--------------------------- 226 (308)
T ss_dssp HHGGGCCSCCEEEEEEC-CSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE--SC---------------------------
T ss_pred HHHhhhcccceeEEEeC-CCCcccCcccCCHHHHHHHHHHhCCCcEEEE--Ee---------------------------
Confidence 53 3 445579999864 34444454 7999999999999998753 22
Q ss_pred CCCCCCHHHHHHHHHhCCCceeEEEec
Q 016981 293 LPAWCSTADYVKLLQSLSLEDIKAEDW 319 (379)
Q Consensus 293 ~~~~~~~~~~~~~l~~aGF~~v~~~~~ 319 (379)
....+++.|+++||++.....+
T Consensus 227 -----aag~VRR~L~~aGF~V~k~~G~ 248 (308)
T 3vyw_A 227 -----SSLSVRKSLLTLGFKVGSSREI 248 (308)
T ss_dssp -----CCHHHHHHHHHTTCEEEEEECC
T ss_pred -----CcHHHHHHHHHCCCEEEecCCC
Confidence 3456889999999998887654
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0011 Score=61.66 Aligned_cols=77 Identities=12% Similarity=0.086 Sum_probs=59.3
Q ss_pred HHHHHHHHHcCCCCC-CCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC
Q 016981 140 RMIEETLRFAGVSED-PTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~-~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 217 (379)
..++++++.+++... ...++..|||||.|.|.++..|++.. +.+|+++++++..+...++.. . .+++.++.+|+
T Consensus 39 ~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~---~~~l~ii~~D~ 114 (353)
T 1i4w_A 39 TVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E---GSPLQILKRDP 114 (353)
T ss_dssp HHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T---TSSCEEECSCT
T ss_pred HHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c---CCCEEEEECCc
Confidence 366677777665421 00135899999999999999999865 569999999999999888776 2 25899999999
Q ss_pred CCC
Q 016981 218 LQQ 220 (379)
Q Consensus 218 ~~~ 220 (379)
.++
T Consensus 115 l~~ 117 (353)
T 1i4w_A 115 YDW 117 (353)
T ss_dssp TCH
T ss_pred cch
Confidence 654
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.073 Score=48.96 Aligned_cols=154 Identities=13% Similarity=0.020 Sum_probs=95.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcC----------------------CCCCeEEEE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARG----------------------LADKVSFQV 214 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~----------------------~~~~i~~~~ 214 (379)
...|+-+|||.=.....+.... +..++=||. |..++.=++.+...+ .+.+..++.
T Consensus 91 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 91 HCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp CSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 5789999999988777776642 567888888 455554333333210 135788899
Q ss_pred ccCCCC----------CCCCCcccEEEeccccCCCCC--HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHH
Q 016981 215 GDALQQ----------PFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQE 282 (379)
Q Consensus 215 ~d~~~~----------~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 282 (379)
+|+.+. .+..+..-++++-.++.+++. ..++|+.+.+.. |+|.+++.+...++ ..+...+..
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p~-----d~fg~~M~~ 243 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNMG-----DRFGQIMIE 243 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCTT-----SHHHHHHHH
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCCC-----CHHHHHHHH
Confidence 998763 133455668888889999864 367888888776 55666666755321 122222212
Q ss_pred HHHHHhhc-cCCCCCCCHHHHHHHHHhCCCceeEEEec
Q 016981 283 LLKKICDA-YYLPAWCSTADYVKLLQSLSLEDIKAEDW 319 (379)
Q Consensus 283 ~~~~~~~~-~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 319 (379)
.+...... .....+.++++..+.|.++||+.+...+.
T Consensus 244 ~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 244 NLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 12111111 11113458899999999999999876543
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0078 Score=57.04 Aligned_cols=97 Identities=18% Similarity=0.057 Sum_probs=66.7
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC---------CCCc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF---------PDGQ 226 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------~~~~ 226 (379)
++.+||-+|+|. |..+..+++..|+ +|+++|.++..++.+++ .| ...+ |..+..+ ....
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lG----a~~i--~~~~~~~~~~~~~~~~~g~g 254 (398)
T 2dph_A 185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AG----FETI--DLRNSAPLRDQIDQILGKPE 254 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TT----CEEE--ETTSSSCHHHHHHHHHSSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cC----CcEE--cCCCcchHHHHHHHHhCCCC
Confidence 389999999986 8888899987787 99999999998887764 23 2222 2222111 1236
Q ss_pred ccEEEeccccCCC--------CCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 227 FDLVWSMESGEHM--------PDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 227 fD~V~~~~~l~~~--------~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+|+|+-.-.-... .++...+..+.++|+|||++++...
T Consensus 255 ~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~ 300 (398)
T 2dph_A 255 VDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGI 300 (398)
T ss_dssp EEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred CCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEecc
Confidence 9999854332210 0123578899999999999987654
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.01 Score=56.12 Aligned_cols=99 Identities=21% Similarity=0.162 Sum_probs=68.3
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-C-----C-CCCCccc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q-----P-FPDGQFD 228 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-----~-~~~~~fD 228 (379)
++.+||-+|+|. |..+..+++..|+ .|+++|.++..++.+++ .|. ..+...-.+ + . .....+|
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa----~~i~~~~~~~~~~~v~~~t~g~g~D 256 (398)
T 1kol_A 185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF----EIADLSLDTPLHEQIAALLGEPEVD 256 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC----EEEETTSSSCHHHHHHHHHSSSCEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC----cEEccCCcchHHHHHHHHhCCCCCC
Confidence 489999999875 8888999988787 79999999998888865 332 222211111 0 0 1123699
Q ss_pred EEEeccccC---------CCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 229 LVWSMESGE---------HMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 229 ~V~~~~~l~---------~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+|+-.-.-. |.+++...+..+.++|++||++++...
T Consensus 257 vvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~ 301 (398)
T 1kol_A 257 CAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 301 (398)
T ss_dssp EEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred EEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence 998654321 223455688999999999999988664
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.016 Score=54.17 Aligned_cols=95 Identities=18% Similarity=0.196 Sum_probs=65.8
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-----CCCCCcccEE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~fD~V 230 (379)
++.+||-+|+|. |..+..+++..|+ +|+++|.++..++.+++. |. . .++..+-.+. ....+.+|+|
T Consensus 190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga--~-~vi~~~~~~~~~~~~~~~~gg~D~v 262 (371)
T 1f8f_A 190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GA--T-HVINSKTQDPVAAIKEITDGGVNFA 262 (371)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TC--S-EEEETTTSCHHHHHHHHTTSCEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CC--C-EEecCCccCHHHHHHHhcCCCCcEE
Confidence 489999999986 8888888887787 799999999998888653 32 1 1222111111 0112369999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+-.-. ....+..+.+.|+|||++++....
T Consensus 263 id~~g------~~~~~~~~~~~l~~~G~iv~~G~~ 291 (371)
T 1f8f_A 263 LESTG------SPEILKQGVDALGILGKIAVVGAP 291 (371)
T ss_dssp EECSC------CHHHHHHHHHTEEEEEEEEECCCC
T ss_pred EECCC------CHHHHHHHHHHHhcCCEEEEeCCC
Confidence 85422 146788999999999999887643
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.016 Score=53.72 Aligned_cols=90 Identities=20% Similarity=0.206 Sum_probs=64.7
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
++.+||-+|+|. |..+..+++..|++|+++|.++..++.+++ .|. .. ++ .+...+ . ..+|+|+-.-.-
T Consensus 176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa--~~-v~-~~~~~~--~-~~~D~vid~~g~ 244 (348)
T 3two_A 176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS----MGV--KH-FY-TDPKQC--K-EELDFIISTIPT 244 (348)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH----TTC--SE-EE-SSGGGC--C-SCEEEEEECCCS
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh----cCC--Ce-ec-CCHHHH--h-cCCCEEEECCCc
Confidence 389999999875 888888898888999999999988887765 332 12 22 332222 2 279999854322
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
. ..+..+.+.|+|||++++...
T Consensus 245 ~------~~~~~~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 245 H------YDLKDYLKLLTYNGDLALVGL 266 (348)
T ss_dssp C------CCHHHHHTTEEEEEEEEECCC
T ss_pred H------HHHHHHHHHHhcCCEEEEECC
Confidence 2 247788899999999998764
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.022 Score=48.07 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=61.3
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--------CCCCcc
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~f 227 (379)
++.+||..|+ |.|..+..++...|++|+++|.++...+.+++ .|. .. . .|..+.. ...+.+
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g~--~~-~--~d~~~~~~~~~~~~~~~~~~~ 108 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGV--EY-V--GDSRSVDFADEILELTDGYGV 108 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCC--SE-E--EETTCSTHHHHHHHHTTTCCE
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC--CE-E--eeCCcHHHHHHHHHHhCCCCC
Confidence 4899999994 55666666666568899999999887766543 232 11 1 2332211 122469
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|+|+.+-. ...+..+.+.|+|||++++...
T Consensus 109 D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 109 DVVLNSLA-------GEAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp EEEEECCC-------THHHHHHHHTEEEEEEEEECSC
T ss_pred eEEEECCc-------hHHHHHHHHHhccCCEEEEEcC
Confidence 99986532 2568889999999999988653
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0029 Score=56.53 Aligned_cols=101 Identities=12% Similarity=0.004 Sum_probs=77.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-CC---CCCCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QP---FPDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~---~~~~~fD~V~~~~ 234 (379)
+..+||+=+|||.+++.+... +.+++.+|.++...+..+++++. ..++.++..|... +. -+..+||+|++-=
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~-~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDP 167 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDP 167 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred CCCceeEeCCcHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhcCCCCCccEEEECC
Confidence 567999999999999999885 68999999999999999888754 2579999999644 21 2245799999765
Q ss_pred ccCCCCCHHHHHHHHHH--hcCCCCEEEEEe
Q 016981 235 SGEHMPDKSKFVSELAR--VTAPAGTIIIVT 263 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r--~LkpgG~l~i~~ 263 (379)
..+.-.+..+++..+.+ .+.|+|.+++--
T Consensus 168 PYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WY 198 (283)
T 2oo3_A 168 SYERKEEYKEIPYAIKNAYSKFSTGLYCVWY 198 (283)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred CCCCCcHHHHHHHHHHHhCccCCCeEEEEEE
Confidence 44433455677766665 567999988854
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.012 Score=54.84 Aligned_cols=94 Identities=17% Similarity=0.138 Sum_probs=64.6
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc---CCC----C-CCCCCcc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGD---ALQ----Q-PFPDGQF 227 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d---~~~----~-~~~~~~f 227 (379)
++.+||-+|+|. |..+..+++..|+ +|+++|.++..++.+++ .|.. .++..+ ..+ + ....+.+
T Consensus 171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~~i~~~~~~g~ 243 (356)
T 1pl8_A 171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKVEGQLGCKP 243 (356)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHHHHHHTSCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---EEEcCcccccchHHHHHHHHhCCCC
Confidence 389999999885 8888889887787 99999999988887764 3321 122211 001 0 0001469
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|+|+-.-. . ...+....++|+|||++++...
T Consensus 244 D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 244 EVTIECTG-----A-EASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp SEEEECSC-----C-HHHHHHHHHHSCTTCEEEECSC
T ss_pred CEEEECCC-----C-hHHHHHHHHHhcCCCEEEEEec
Confidence 99985321 1 4567888999999999988764
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.029 Score=51.73 Aligned_cols=92 Identities=20% Similarity=0.147 Sum_probs=65.7
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC------CCCcccEE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF------PDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~------~~~~fD~V 230 (379)
++.+||-+|+|. |..+..+++..|++|+++|.++..++.+++ .|. .. .+ |..+..+ ..+.+|+|
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa--~~-~i--~~~~~~~~~~~~~~~g~~d~v 236 (340)
T 3s2e_A 166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR----LGA--EV-AV--NARDTDPAAWLQKEIGGAHGV 236 (340)
T ss_dssp TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTC--SE-EE--ETTTSCHHHHHHHHHSSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----cCC--CE-EE--eCCCcCHHHHHHHhCCCCCEE
Confidence 489999999875 888999999889999999999998888765 332 11 12 2222111 11368888
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+-... ....++.+.+.|+|||++++...
T Consensus 237 id~~g------~~~~~~~~~~~l~~~G~iv~~G~ 264 (340)
T 3s2e_A 237 LVTAV------SPKAFSQAIGMVRRGGTIALNGL 264 (340)
T ss_dssp EESSC------CHHHHHHHHHHEEEEEEEEECSC
T ss_pred EEeCC------CHHHHHHHHHHhccCCEEEEeCC
Confidence 75421 15678899999999999988754
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.08 Score=49.02 Aligned_cols=94 Identities=21% Similarity=0.223 Sum_probs=64.5
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC-CCCC------CC---CCc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQQP------FP---DGQ 226 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~------~~---~~~ 226 (379)
++.+||-+|+|. |..+..+++..|++|+++|.++..++.+++ .|. . ..+..+- .+.. .. .+.
T Consensus 168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa--~-~~~~~~~~~~~~~~i~~~~~~~~g~g 240 (352)
T 1e3j_A 168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN----CGA--D-VTLVVDPAKEEESSIIERIRSAIGDL 240 (352)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTC--S-EEEECCTTTSCHHHHHHHHHHHSSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCC--C-EEEcCcccccHHHHHHHHhccccCCC
Confidence 389999999875 778888888778899999999998888764 332 1 1221110 1110 11 246
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+|+|+-.-. . ...++.+.++|+|||++++...
T Consensus 241 ~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 241 PNVTIDCSG-----N-EKCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp CSEEEECSC-----C-HHHHHHHHHHSCTTCEEEECSC
T ss_pred CCEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEec
Confidence 999985422 1 4568888999999999988764
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.15 Score=44.93 Aligned_cols=105 Identities=10% Similarity=0.098 Sum_probs=70.8
Q ss_pred CCEEEEeCCcccHHHHHHHHH-------c-CCEEEEEe-----CCH----------------------HHHHHH---HHH
Q 016981 159 PKNVVDVGCGIGGSSRYLAKK-------F-GAKCQGIT-----LSP----------------------VQAQRA---NAL 200 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~-------~-~~~v~gvD-----~s~----------------------~~~~~a---~~~ 200 (379)
+..|+|+||-.|..+..++.. . ..+|+|+| +.+ +.+... .++
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 679999999999988876642 1 36899999 321 111111 111
Q ss_pred HHHcCC-CCCeEEEEccCCCC-C-----CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 201 AAARGL-ADKVSFQVGDALQQ-P-----FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 201 ~~~~~~-~~~i~~~~~d~~~~-~-----~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
.+..+. ++++.++.+++.+. | .+.++||+|+.-.-. .......+..+...|+|||.+++-++.
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y~~t~~~le~~~p~l~~GGvIv~DD~~ 219 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--YEPTKAVLEAIRPYLTKGSIVAFDELD 219 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--HHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--cchHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 122344 37899999998763 2 245679999876532 223356799999999999999987753
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.011 Score=55.37 Aligned_cols=93 Identities=23% Similarity=0.252 Sum_probs=63.4
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-C-CCCCCcccEEEecc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q-PFPDGQFDLVWSME 234 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~fD~V~~~~ 234 (379)
++.+||-+|+|. |..+..+++..|++|+++|.++..++.+++ .|. + .++...-.+ . ... +.+|+|+-.-
T Consensus 194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~----lGa-~--~vi~~~~~~~~~~~~-~g~Dvvid~~ 265 (369)
T 1uuf_A 194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA----LGA-D--EVVNSRNADEMAAHL-KSFDFILNTV 265 (369)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----HTC-S--EEEETTCHHHHHTTT-TCEEEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC-c--EEeccccHHHHHHhh-cCCCEEEECC
Confidence 389999999885 788888888778899999999988888775 232 1 122111001 0 111 4699998543
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.-. ..++.+.+.|+|||++++...
T Consensus 266 g~~------~~~~~~~~~l~~~G~iv~~G~ 289 (369)
T 1uuf_A 266 AAP------HNLDDFTTLLKRDGTMTLVGA 289 (369)
T ss_dssp SSC------CCHHHHHTTEEEEEEEEECCC
T ss_pred CCH------HHHHHHHHHhccCCEEEEecc
Confidence 321 236778899999999887654
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.015 Score=54.57 Aligned_cols=92 Identities=22% Similarity=0.246 Sum_probs=65.5
Q ss_pred CCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----------CCCCc
Q 016981 159 PKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDGQ 226 (379)
Q Consensus 159 ~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~ 226 (379)
+.+||-+|+|. |..+..+++..|+ +|+++|.++...+.+++. |.. ..+ |..+.. ...+.
T Consensus 183 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi--~~~~~~~~~~i~~~~~~~~gg 253 (370)
T 4ej6_A 183 GSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV----GAT---ATV--DPSAGDVVEAIAGPVGLVPGG 253 (370)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS---EEE--CTTSSCHHHHHHSTTSSSTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC---EEE--CCCCcCHHHHHHhhhhccCCC
Confidence 89999999875 7788888888787 899999999988887763 321 111 221110 22347
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+|+|+-.-. ....+..+.++|++||++++....
T Consensus 254 ~Dvvid~~G------~~~~~~~~~~~l~~~G~vv~~G~~ 286 (370)
T 4ej6_A 254 VDVVIECAG------VAETVKQSTRLAKAGGTVVILGVL 286 (370)
T ss_dssp EEEEEECSC------CHHHHHHHHHHEEEEEEEEECSCC
T ss_pred CCEEEECCC------CHHHHHHHHHHhccCCEEEEEecc
Confidence 999985321 146788999999999999887643
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.16 Score=40.10 Aligned_cols=90 Identities=18% Similarity=0.124 Sum_probs=58.1
Q ss_pred CCEEEEeCCcccHHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----CCCCcccEEE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKK---FGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVW 231 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~ 231 (379)
..+|+=+|||. ++..+++. .|..|+++|.++..++.+++ ..+.++.+|..+.. ..-..+|+|+
T Consensus 7 ~~~viIiG~G~--~G~~la~~L~~~g~~v~vid~~~~~~~~~~~--------~g~~~i~gd~~~~~~l~~a~i~~ad~vi 76 (140)
T 3fwz_A 7 CNHALLVGYGR--VGSLLGEKLLASDIPLVVIETSRTRVDELRE--------RGVRAVLGNAANEEIMQLAHLECAKWLI 76 (140)
T ss_dssp CSCEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH--------TTCEEEESCTTSHHHHHHTTGGGCSEEE
T ss_pred CCCEEEECcCH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--------cCCCEEECCCCCHHHHHhcCcccCCEEE
Confidence 56899999864 44444433 37899999999998887664 24677888876532 1224688887
Q ss_pred eccccCCCCCH--HHHHHHHHHhcCCCCEEEEEe
Q 016981 232 SMESGEHMPDK--SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 232 ~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+. +++. ...+....+.+.|+..++...
T Consensus 77 ~~-----~~~~~~n~~~~~~a~~~~~~~~iiar~ 105 (140)
T 3fwz_A 77 LT-----IPNGYEAGEIVASARAKNPDIEIIARA 105 (140)
T ss_dssp EC-----CSCHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred EE-----CCChHHHHHHHHHHHHHCCCCeEEEEE
Confidence 53 2333 223445667788888766533
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.073 Score=49.48 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=67.1
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC--CC------CCCCCcc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDAL--QQ------PFPDGQF 227 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~--~~------~~~~~~f 227 (379)
++.+||=+|+|. |..+..+++..|++ |+++|.++..++.+++. .. .-+.+...+.. ++ ......+
T Consensus 179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~----~~~~~~~~~~~~~~~~~~v~~~t~g~g~ 253 (363)
T 3m6i_A 179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP----EVVTHKVERLSAEESAKKIVESFGGIEP 253 (363)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT----TCEEEECCSCCHHHHHHHHHHHTSSCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch----hcccccccccchHHHHHHHHHHhCCCCC
Confidence 388999999875 78888999887886 99999999999988875 21 12333211110 10 0123569
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
|+|+-.-. ....+..+.++|++||++++....
T Consensus 254 Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~G~~ 285 (363)
T 3m6i_A 254 AVALECTG------VESSIAAAIWAVKFGGKVFVIGVG 285 (363)
T ss_dssp SEEEECSC------CHHHHHHHHHHSCTTCEEEECCCC
T ss_pred CEEEECCC------ChHHHHHHHHHhcCCCEEEEEccC
Confidence 99985321 145788899999999999987643
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.04 Score=51.06 Aligned_cols=93 Identities=16% Similarity=0.088 Sum_probs=65.0
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--------CCCCcc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~f 227 (379)
++.+||-+|+|. |..+..+++..|+ +|+++|.++..++.+++. |. ..++ |..+.. .....+
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga---~~vi--~~~~~~~~~~v~~~t~g~g~ 236 (352)
T 3fpc_A 166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY----GA---TDII--NYKNGDIVEQILKATDGKGV 236 (352)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH----TC---CEEE--CGGGSCHHHHHHHHTTTCCE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CC---ceEE--cCCCcCHHHHHHHHcCCCCC
Confidence 389999999875 7788888887787 899999999888887763 32 1122 221111 123369
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
|+|+-.-.- ...+..+.+.|+|||++++....
T Consensus 237 D~v~d~~g~------~~~~~~~~~~l~~~G~~v~~G~~ 268 (352)
T 3fpc_A 237 DKVVIAGGD------VHTFAQAVKMIKPGSDIGNVNYL 268 (352)
T ss_dssp EEEEECSSC------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred CEEEECCCC------hHHHHHHHHHHhcCCEEEEeccc
Confidence 999853221 24688889999999999887643
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.06 Score=50.17 Aligned_cols=94 Identities=21% Similarity=0.094 Sum_probs=65.4
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC------CCCCcccEE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~fD~V 230 (379)
++.+||-+|+|. |..+..+++..|++|+++|.++..++.+++. |. . .++..+..+.. .....+|+|
T Consensus 189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga--~-~vi~~~~~~~~~~v~~~~~g~g~D~v 261 (363)
T 3uog_A 189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFAL----GA--D-HGINRLEEDWVERVYALTGDRGADHI 261 (363)
T ss_dssp TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----TC--S-EEEETTTSCHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHc----CC--C-EEEcCCcccHHHHHHHHhCCCCceEE
Confidence 489999999875 7788888888799999999999988887653 32 1 12221111110 123369999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+-.-. . ..+..+.+.|+|||++++....
T Consensus 262 id~~g-~------~~~~~~~~~l~~~G~iv~~G~~ 289 (363)
T 3uog_A 262 LEIAG-G------AGLGQSLKAVAPDGRISVIGVL 289 (363)
T ss_dssp EEETT-S------SCHHHHHHHEEEEEEEEEECCC
T ss_pred EECCC-h------HHHHHHHHHhhcCCEEEEEecC
Confidence 86533 1 2467788999999999988654
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.064 Score=49.20 Aligned_cols=91 Identities=15% Similarity=0.145 Sum_probs=62.9
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-CC-------CCCCcc
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QP-------FPDGQF 227 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~-------~~~~~f 227 (379)
++.+||-.|+ |.|..+..+++..|++|+++|.++..++.+++ .|. .. ..|..+ .. ...+.+
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g~--~~---~~d~~~~~~~~~~~~~~~~~~~ 215 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ----IGF--DA---AFNYKTVNSLEEALKKASPDGY 215 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC--SE---EEETTSCSCHHHHHHHHCTTCE
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCC--cE---EEecCCHHHHHHHHHHHhCCCC
Confidence 4899999998 56777777777668899999999988877733 232 11 123322 11 112469
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|+|+.+-. ...+..+.+.|+|||++++...
T Consensus 216 d~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g~ 245 (333)
T 1v3u_A 216 DCYFDNVG-------GEFLNTVLSQMKDFGKIAICGA 245 (333)
T ss_dssp EEEEESSC-------HHHHHHHHTTEEEEEEEEECCC
T ss_pred eEEEECCC-------hHHHHHHHHHHhcCCEEEEEec
Confidence 99986543 2357888999999999988654
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.03 Score=57.08 Aligned_cols=125 Identities=22% Similarity=0.226 Sum_probs=79.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-------------CCEEEEEeC---CHHHHHHHH-----------HHHHHcCC-----
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-------------GAKCQGITL---SPVQAQRAN-----------ALAAARGL----- 206 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-------------~~~v~gvD~---s~~~~~~a~-----------~~~~~~~~----- 206 (379)
.-+|+|+|.|+|.....+.+.. ..+++.++. +...+..+- +.+.....
T Consensus 59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 138 (689)
T 3pvc_A 59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC 138 (689)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence 5799999999999877665532 146899998 555555432 22222110
Q ss_pred -----C---CCeEEEEccCCCC-C-CC---CCcccEEEeccccCCC-CCH--HHHHHHHHHhcCCCCEEEEEeccCCCCC
Q 016981 207 -----A---DKVSFQVGDALQQ-P-FP---DGQFDLVWSMESGEHM-PDK--SKFVSELARVTAPAGTIIIVTWCHRDLA 270 (379)
Q Consensus 207 -----~---~~i~~~~~d~~~~-~-~~---~~~fD~V~~~~~l~~~-~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~ 270 (379)
. -.+++..+|+.+. + +. .+.+|.++.-..--.- ++. ..++..+.++++|||.+.-..
T Consensus 139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~------- 211 (689)
T 3pvc_A 139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFT------- 211 (689)
T ss_dssp EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESC-------
T ss_pred eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEecc-------
Confidence 0 1356677787542 2 21 4689999875422211 221 789999999999999865422
Q ss_pred CCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEE
Q 016981 271 PSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
....+++.|+++||.+....
T Consensus 212 ---------------------------~~~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 212 ---------------------------AAGFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp ---------------------------CCHHHHHHHHHTTCEEEEEE
T ss_pred ---------------------------CcHHHHHHHHhCCeEEEecc
Confidence 23457888999999877655
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.058 Score=54.74 Aligned_cols=124 Identities=18% Similarity=0.148 Sum_probs=79.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-----------C--CEEEEEeC---CHHHHHHHHH-----------HHHHcCCC----
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-----------G--AKCQGITL---SPVQAQRANA-----------LAAARGLA---- 207 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-----------~--~~v~gvD~---s~~~~~~a~~-----------~~~~~~~~---- 207 (379)
.-+|||+|-|+|.......+.. . .++++++. +++.+..+-. .......+
T Consensus 67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (676)
T 3ps9_A 67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC 146 (676)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence 5699999999999766655432 1 36899998 7777763322 22222110
Q ss_pred ---------CCeEEEEccCCCC-C-CC---CCcccEEEeccccCCCCCH----HHHHHHHHHhcCCCCEEEEEeccCCCC
Q 016981 208 ---------DKVSFQVGDALQQ-P-FP---DGQFDLVWSMESGEHMPDK----SKFVSELARVTAPAGTIIIVTWCHRDL 269 (379)
Q Consensus 208 ---------~~i~~~~~d~~~~-~-~~---~~~fD~V~~~~~l~~~~~~----~~~l~~~~r~LkpgG~l~i~~~~~~~~ 269 (379)
-.+++..+|+.+. + +. ...||+|+.-. +..-.++ ..+++.++++++|||.+.-..
T Consensus 147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~-f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~------ 219 (676)
T 3ps9_A 147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDG-FAPAKNPDMWTQNLFNAMARLARPGGTLATFT------ 219 (676)
T ss_dssp EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECC-SCGGGCGGGSCHHHHHHHHHHEEEEEEEEESC------
T ss_pred eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECC-CCCcCChhhhhHHHHHHHHHHhCCCCEEEecc------
Confidence 1244556666442 2 11 36799998643 3222233 789999999999999875422
Q ss_pred CCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEE
Q 016981 270 APSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
....+++.|+++||.+....
T Consensus 220 ----------------------------~~~~vr~~L~~aGf~v~~~~ 239 (676)
T 3ps9_A 220 ----------------------------SAGFVRRGLQDAGFTMQKRK 239 (676)
T ss_dssp ----------------------------CCHHHHHHHHHHTCEEEEEE
T ss_pred ----------------------------CcHHHHHHHHhCCeEEEecc
Confidence 23457788999999876654
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.04 Score=51.66 Aligned_cols=68 Identities=18% Similarity=0.108 Sum_probs=53.6
Q ss_pred CEEEEeCCcccHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC---C-----CCCcccEE
Q 016981 160 KNVVDVGCGIGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---F-----PDGQFDLV 230 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~-----~~~~fD~V 230 (379)
.+++|+-||.|.++..+... |.+ |.++|+++.+.+..+.++ ++..++.+|+.++. + ....+|+|
T Consensus 3 ~~vidLFsG~GGlslG~~~a-G~~~v~avE~d~~a~~t~~~N~------~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i 75 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA-GFDVKMAVEIDQHAINTHAINF------PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGI 75 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH-TCEEEEEECSCHHHHHHHHHHC------TTSEEECCCGGGCCHHHHHHHHCSCCCCCEE
T ss_pred CeEEEEccCcCHHHHHHHHC-CCcEEEEEeCCHHHHHHHHHhC------CCCceEecChhhcCHHHHHhhcccCCCeeEE
Confidence 58999999999999999887 554 669999999988887764 35678888988763 1 24679999
Q ss_pred Eecc
Q 016981 231 WSME 234 (379)
Q Consensus 231 ~~~~ 234 (379)
+..-
T Consensus 76 ~ggp 79 (376)
T 3g7u_A 76 IGGP 79 (376)
T ss_dssp EECC
T ss_pred EecC
Confidence 8643
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.028 Score=51.26 Aligned_cols=88 Identities=15% Similarity=0.216 Sum_probs=60.1
Q ss_pred CCCCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 157 KRPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 157 ~~~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
.++.+||=+|+| .|..+..+++..|++|++++ ++...+.+++. | ......|...+ .+.+|+|+-.-.
T Consensus 141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~l----G----a~~v~~d~~~v---~~g~Dvv~d~~g 208 (315)
T 3goh_A 141 TKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKR----G----VRHLYREPSQV---TQKYFAIFDAVN 208 (315)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHH----T----EEEEESSGGGC---CSCEEEEECC--
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHc----C----CCEEEcCHHHh---CCCccEEEECCC
Confidence 358999999996 47888889988889999999 88888887652 2 22222242222 467999984322
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
- ..+..+.++|+|||++++..
T Consensus 209 ~-------~~~~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 209 S-------QNAAALVPSLKANGHIICIQ 229 (315)
T ss_dssp ------------TTGGGEEEEEEEEEEC
T ss_pred c-------hhHHHHHHHhcCCCEEEEEe
Confidence 1 12356789999999998874
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.082 Score=48.54 Aligned_cols=93 Identities=14% Similarity=0.133 Sum_probs=64.3
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-------CCCCccc
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQFD 228 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~fD 228 (379)
++.+||-.|+ |.|..+..+++..|++|+++|.++..++.+.+. .|. . ..+ |..+.. ...+.+|
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~--~-~~~--~~~~~~~~~~~~~~~~~~~d 220 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEE---LGF--D-GAI--DYKNEDLAAGLKRECPKGID 220 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---TCC--S-EEE--ETTTSCHHHHHHHHCTTCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cCC--C-EEE--ECCCHHHHHHHHHhcCCCce
Confidence 3899999998 567788888887789999999999887776322 232 1 111 222211 1134699
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+|+.+-. ...+..+.+.|++||++++....
T Consensus 221 ~vi~~~g-------~~~~~~~~~~l~~~G~iv~~G~~ 250 (336)
T 4b7c_A 221 VFFDNVG-------GEILDTVLTRIAFKARIVLCGAI 250 (336)
T ss_dssp EEEESSC-------HHHHHHHHTTEEEEEEEEECCCG
T ss_pred EEEECCC-------cchHHHHHHHHhhCCEEEEEeec
Confidence 9986432 24788899999999999887643
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.072 Score=49.06 Aligned_cols=92 Identities=18% Similarity=0.162 Sum_probs=62.5
Q ss_pred CCCEEEEeCCc--ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--------CCCCcc
Q 016981 158 RPKNVVDVGCG--IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (379)
Q Consensus 158 ~~~~vLDiGcG--tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~f 227 (379)
++.+||-+|+| .|..+..+++..|++|+++|.++..++.+++. |. .. .+ |..+.. .....+
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----ga--~~-~~--~~~~~~~~~~~~~~~~~~g~ 214 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRL----GA--AY-VI--DTSTAPLYETVMELTNGIGA 214 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TC--SE-EE--ETTTSCHHHHHHHHTTTSCE
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhC----CC--cE-EE--eCCcccHHHHHHHHhCCCCC
Confidence 48999999987 57788888887799999999999888877762 32 11 12 222211 123469
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
|+|+..-. ...+.+..++|+|||++++....
T Consensus 215 Dvvid~~g-------~~~~~~~~~~l~~~G~iv~~G~~ 245 (340)
T 3gms_A 215 DAAIDSIG-------GPDGNELAFSLRPNGHFLTIGLL 245 (340)
T ss_dssp EEEEESSC-------HHHHHHHHHTEEEEEEEEECCCT
T ss_pred cEEEECCC-------ChhHHHHHHHhcCCCEEEEEeec
Confidence 99986432 12234455899999999987643
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.016 Score=53.75 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=54.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC---CCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V~~~ 233 (379)
..+|||+-||.|.++..+.... ...|.++|+++.+++..+.++. +..+..+|+.++. ++...+|+|+..
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~------~~~~~~~Di~~~~~~~~~~~~~D~l~~g 75 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFDRLSFDMILMS 75 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc------ccccccCCHHHccHhHcCcCCcCEEEEc
Confidence 4689999999999999998873 1368999999999999888762 3457788888763 111258999875
Q ss_pred cc
Q 016981 234 ES 235 (379)
Q Consensus 234 ~~ 235 (379)
--
T Consensus 76 pP 77 (343)
T 1g55_A 76 PP 77 (343)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=95.15 E-value=0.099 Score=48.13 Aligned_cols=92 Identities=14% Similarity=0.137 Sum_probs=64.0
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC------CCcccEE
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP------DGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~------~~~fD~V 230 (379)
++.+||-+|+| .|..+..+++..|++|+++|.++..++.+++ .|. . .+ .|..+..+. .+.+|+|
T Consensus 164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lGa--~-~~--~d~~~~~~~~~~~~~~~~~d~v 234 (339)
T 1rjw_A 164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGA--D-LV--VNPLKEDAAKFMKEKVGGVHAA 234 (339)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTC--S-EE--ECTTTSCHHHHHHHHHSSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----CCC--C-EE--ecCCCccHHHHHHHHhCCCCEE
Confidence 38999999986 4777888888778999999999988887764 332 1 11 233221110 0468998
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+..-. . ...++.+.++|++||++++...
T Consensus 235 id~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 262 (339)
T 1rjw_A 235 VVTAV-----S-KPAFQSAYNSIRRGGACVLVGL 262 (339)
T ss_dssp EESSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred EECCC-----C-HHHHHHHHHHhhcCCEEEEecc
Confidence 75432 1 3568889999999999988654
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=95.00 E-value=0.072 Score=50.55 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=48.6
Q ss_pred CCCCEEEEeCCcccHHHHHHH-HHcC--CEEEEEeCCHHHHHHHHHHHHH--c-CCCCCeEEEEccC
Q 016981 157 KRPKNVVDVGCGIGGSSRYLA-KKFG--AKCQGITLSPVQAQRANALAAA--R-GLADKVSFQVGDA 217 (379)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~-~~~~--~~v~gvD~s~~~~~~a~~~~~~--~-~~~~~i~~~~~d~ 217 (379)
.++..|+|+|++.|..+..++ +..+ ++|+++|++|...+..+++++. + +.++++.++..-+
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al 291 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGA 291 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEE
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEE
Confidence 458999999999999999888 4443 6999999999999999999987 2 2225777765444
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.019 Score=53.20 Aligned_cols=92 Identities=18% Similarity=0.130 Sum_probs=64.6
Q ss_pred CCEEEEeCCcc-cHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc----cC-CCCCCCCCcccEE
Q 016981 159 PKNVVDVGCGI-GGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG----DA-LQQPFPDGQFDLV 230 (379)
Q Consensus 159 ~~~vLDiGcGt-G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~----d~-~~~~~~~~~fD~V 230 (379)
+.+||-+|+|. |..+..+++.. |++|+++|.++..++.+++. |. + .++.. |. ..+. ....+|+|
T Consensus 171 g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l----Ga-~--~vi~~~~~~~~~~~~~-~g~g~D~v 242 (344)
T 2h6e_A 171 EPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL----GA-D--YVSEMKDAESLINKLT-DGLGASIA 242 (344)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH----TC-S--EEECHHHHHHHHHHHH-TTCCEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh----CC-C--EEeccccchHHHHHhh-cCCCccEE
Confidence 89999999874 77888999988 89999999999988887652 32 1 11111 10 0111 12369999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+-.-. . ...++.+.++|+|||++++...
T Consensus 243 id~~g-----~-~~~~~~~~~~l~~~G~iv~~g~ 270 (344)
T 2h6e_A 243 IDLVG-----T-EETTYNLGKLLAQEGAIILVGM 270 (344)
T ss_dssp EESSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred EECCC-----C-hHHHHHHHHHhhcCCEEEEeCC
Confidence 85422 1 4578889999999999988654
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.21 Score=47.16 Aligned_cols=95 Identities=22% Similarity=0.148 Sum_probs=63.4
Q ss_pred CCCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--------CCCCc
Q 016981 157 KRPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQ 226 (379)
Q Consensus 157 ~~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~ 226 (379)
.++.+||=+|+|. |..+..+++..|+ +|+++|.++..++.+++. |. -.++ |..+.. .....
T Consensus 212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga---~~vi--~~~~~~~~~~i~~~t~g~g 282 (404)
T 3ip1_A 212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL----GA---DHVI--DPTKENFVEAVLDYTNGLG 282 (404)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TC---SEEE--CTTTSCHHHHHHHHTTTCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CC---CEEE--cCCCCCHHHHHHHHhCCCC
Confidence 3589999999874 7788888887787 999999999988888753 32 1122 222111 12236
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhc----CCCCEEEEEecc
Q 016981 227 FDLVWSMESGEHMPDKSKFVSELARVT----APAGTIIIVTWC 265 (379)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~L----kpgG~l~i~~~~ 265 (379)
+|+|+-. .......+..+.+.| ++||++++....
T Consensus 283 ~D~vid~-----~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~ 320 (404)
T 3ip1_A 283 AKLFLEA-----TGVPQLVWPQIEEVIWRARGINATVAIVARA 320 (404)
T ss_dssp CSEEEEC-----SSCHHHHHHHHHHHHHHCSCCCCEEEECSCC
T ss_pred CCEEEEC-----CCCcHHHHHHHHHHHHhccCCCcEEEEeCCC
Confidence 9999743 233334555555566 999999987643
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.13 Score=48.03 Aligned_cols=92 Identities=17% Similarity=0.317 Sum_probs=64.0
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC--CC-------CCCCc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QP-------FPDGQ 226 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~-------~~~~~ 226 (379)
++.+||-+|+|. |..+..+++..|+ +|+++|.++..++.+++ .|. + .++ |..+ .. ...+.
T Consensus 192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa-~--~vi--~~~~~~~~~~~~~~~~~~~g 262 (374)
T 1cdo_A 192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGA-T--DFV--NPNDHSEPISQVLSKMTNGG 262 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTC-C--EEE--CGGGCSSCHHHHHHHHHTSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCC-c--eEE--eccccchhHHHHHHHHhCCC
Confidence 489999999874 7788888887787 89999999988887764 332 1 112 2221 01 11236
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCC-CEEEEEec
Q 016981 227 FDLVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (379)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~i~~~ 264 (379)
+|+|+-.-. . ...+..+.++|+|| |++++...
T Consensus 263 ~D~vid~~g-----~-~~~~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 263 VDFSLECVG-----N-VGVMRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp BSEEEECSC-----C-HHHHHHHHHTBCTTTCEEEECSC
T ss_pred CCEEEECCC-----C-HHHHHHHHHHhhcCCcEEEEEcC
Confidence 999985321 1 45688999999999 99988764
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.87 E-value=0.039 Score=50.61 Aligned_cols=58 Identities=14% Similarity=0.090 Sum_probs=46.2
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG 205 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~ 205 (379)
+++.++.... .++..|||.-||+|..+....+. |.+.+|+|+++...+.+++++...+
T Consensus 241 l~~~~i~~~~------~~~~~VlDpF~GsGtt~~aa~~~-gr~~ig~e~~~~~~~~~~~r~~~~~ 298 (323)
T 1boo_A 241 LPEFFIRMLT------EPDDLVVDIFGGSNTTGLVAERE-SRKWISFEMKPEYVAASAFRFLDNN 298 (323)
T ss_dssp HHHHHHHHHC------CTTCEEEETTCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred HHHHHHHHhC------CCCCEEEECCCCCCHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHhcc
Confidence 4555555432 24899999999999998887765 8899999999999999999876543
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.033 Score=52.11 Aligned_cols=92 Identities=15% Similarity=0.099 Sum_probs=64.0
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC----C-----CCCCCc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ----Q-----PFPDGQ 226 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~----~-----~~~~~~ 226 (379)
++.+||-+|+|. |..+..+++..|+ +|+++|.++..++.+++ .|. . .++ |..+ . ....+.
T Consensus 191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa--~-~vi--~~~~~~~~~~~~i~~~t~gg 261 (373)
T 1p0f_A 191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGA--T-ECL--NPKDYDKPIYEVICEKTNGG 261 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTC--S-EEE--CGGGCSSCHHHHHHHHTTSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCC--c-EEE--ecccccchHHHHHHHHhCCC
Confidence 489999999874 7788888887787 89999999988887764 332 1 122 2211 1 011247
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCC-CEEEEEec
Q 016981 227 FDLVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (379)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~i~~~ 264 (379)
+|+|+-.-. . ...+..+.++|++| |++++...
T Consensus 262 ~Dvvid~~g-----~-~~~~~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 262 VDYAVECAG-----R-IETMMNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp BSEEEECSC-----C-HHHHHHHHHTBCTTTCEEEECCC
T ss_pred CCEEEECCC-----C-HHHHHHHHHHHhcCCCEEEEEcc
Confidence 999985321 1 45688899999999 99988664
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.12 Score=47.66 Aligned_cols=92 Identities=23% Similarity=0.324 Sum_probs=64.1
Q ss_pred CCCEEEEeCCc--ccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-------CCC-Cc
Q 016981 158 RPKNVVDVGCG--IGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPD-GQ 226 (379)
Q Consensus 158 ~~~~vLDiGcG--tG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~-~~ 226 (379)
++.+||-.|+| .|..+..+++.. |++|+++|.++..++.+++. |. .. +. |..+.. ... +.
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~----g~--~~-~~--~~~~~~~~~~~~~~~~~~~ 240 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GA--DY-VI--NASMQDPLAEIRRITESKG 240 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TC--SE-EE--ETTTSCHHHHHHHHTTTSC
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CC--CE-Ee--cCCCccHHHHHHHHhcCCC
Confidence 38999999987 566777888887 89999999999888877542 32 11 11 222111 112 47
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+|+|+..-. ....++.+.++|+|||++++...
T Consensus 241 ~d~vi~~~g------~~~~~~~~~~~l~~~G~iv~~g~ 272 (347)
T 1jvb_A 241 VDAVIDLNN------SEKTLSVYPKALAKQGKYVMVGL 272 (347)
T ss_dssp EEEEEESCC------CHHHHTTGGGGEEEEEEEEECCS
T ss_pred ceEEEECCC------CHHHHHHHHHHHhcCCEEEEECC
Confidence 999985432 14568888999999999988654
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=94.76 E-value=0.061 Score=49.23 Aligned_cols=59 Identities=20% Similarity=0.244 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCH---HHHHHHHHHHHHcC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSP---VQAQRANALAAARG 205 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~---~~~~~a~~~~~~~~ 205 (379)
.+++.++.... . ++..|||.-||+|..+....+. |.+.+|+|+++ ...+.+++++...+
T Consensus 230 ~l~~~~i~~~~-~-----~~~~vlDpF~GsGtt~~aa~~~-~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 230 AVIERLVRALS-H-----PGSTVLDFFAGSGVTARVAIQE-GRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp HHHHHHHHHHS-C-----TTCEEEETTCTTCHHHHHHHHH-TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhC-C-----CCCEEEecCCCCCHHHHHHHHc-CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 35556665542 2 4899999999999999888876 88999999999 99999999886543
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.068 Score=49.40 Aligned_cols=92 Identities=22% Similarity=0.223 Sum_probs=63.3
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-CC-------CCCCcc
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QP-------FPDGQF 227 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~-------~~~~~f 227 (379)
++.+||-+|+ |.|..+..+++..|++|+++|.++..++.+++ .|. .. . .|..+ .. ...+.+
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~----~g~--~~-~--~d~~~~~~~~~~~~~~~~~~~ 239 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS----IGG--EV-F--IDFTKEKDIVGAVLKATDGGA 239 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH----TTC--CE-E--EETTTCSCHHHHHHHHHTSCE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH----cCC--ce-E--EecCccHhHHHHHHHHhCCCC
Confidence 4899999998 56777777777668899999998887776654 232 11 1 23321 11 011268
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|+|+..-. ....++.+.+.|++||++++...
T Consensus 240 D~vi~~~g------~~~~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 240 HGVINVSV------SEAAIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp EEEEECSS------CHHHHHHHTTSEEEEEEEEECCC
T ss_pred CEEEECCC------cHHHHHHHHHHHhcCCEEEEEeC
Confidence 99986532 14578899999999999988654
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.14 Score=47.20 Aligned_cols=92 Identities=14% Similarity=0.098 Sum_probs=63.8
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C-------CCCCcc
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-------FPDGQF 227 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-------~~~~~f 227 (379)
++.+||-.|+ |.|..+..+++..|++|+++|.++..++.+++. .|. .. .. |..+. . ...+.+
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~---~g~--~~-~~--d~~~~~~~~~~~~~~~~~~~ 226 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTK---FGF--DD-AF--NYKEESDLTAALKRCFPNGI 226 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---SCC--SE-EE--ETTSCSCSHHHHHHHCTTCE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cCC--ce-EE--ecCCHHHHHHHHHHHhCCCC
Confidence 4899999997 567788888887788999999999888776532 232 11 11 32221 1 112469
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|+|+.+-. ...+..+.+.|++||++++...
T Consensus 227 d~vi~~~g-------~~~~~~~~~~l~~~G~~v~~G~ 256 (345)
T 2j3h_A 227 DIYFENVG-------GKMLDAVLVNMNMHGRIAVCGM 256 (345)
T ss_dssp EEEEESSC-------HHHHHHHHTTEEEEEEEEECCC
T ss_pred cEEEECCC-------HHHHHHHHHHHhcCCEEEEEcc
Confidence 99986532 2478889999999999988754
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.2 Score=46.16 Aligned_cols=92 Identities=21% Similarity=0.191 Sum_probs=64.6
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--------CCCCcc
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~f 227 (379)
++.+||-+|+ |.|..+..+++..|++|+++|.++..++.+++ .|. . .. .|..+.. .....+
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~----~ga--~-~~--~d~~~~~~~~~~~~~~~~~~~ 236 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKA----LGA--D-ET--VNYTHPDWPKEVRRLTGGKGA 236 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----HTC--S-EE--EETTSTTHHHHHHHHTTTTCE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCC--C-EE--EcCCcccHHHHHHHHhCCCCc
Confidence 4899999998 57788888888778899999999998888764 232 1 11 2322211 112469
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
|+|+..-. . ..+..+.+.|+++|++++....
T Consensus 237 d~vi~~~g-~------~~~~~~~~~l~~~G~~v~~g~~ 267 (343)
T 2eih_A 237 DKVVDHTG-A------LYFEGVIKATANGGRIAIAGAS 267 (343)
T ss_dssp EEEEESSC-S------SSHHHHHHHEEEEEEEEESSCC
T ss_pred eEEEECCC-H------HHHHHHHHhhccCCEEEEEecC
Confidence 99986544 2 2477788999999998886543
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.19 Score=45.80 Aligned_cols=94 Identities=20% Similarity=0.125 Sum_probs=64.7
Q ss_pred CCCEEEEeC--CcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC------CCCCCcccE
Q 016981 158 RPKNVVDVG--CGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiG--cGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~~fD~ 229 (379)
++.+||-+| .|.|..+..+++..|++|+++|.++..++.+++. |. . ..+..+-.+. ......+|+
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----Ga--~-~~~~~~~~~~~~~~~~~~~~~g~Dv 212 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKAL----GA--W-ETIDYSHEDVAKRVLELTDGKKCPV 212 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TC--S-EEEETTTSCHHHHHHHHTTTCCEEE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CC--C-EEEeCCCccHHHHHHHHhCCCCceE
Confidence 489999998 3468888888887799999999999988887752 32 1 1221111111 012346999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
|+..-.- ..+..+.+.|+|||++++....
T Consensus 213 vid~~g~-------~~~~~~~~~l~~~G~iv~~g~~ 241 (325)
T 3jyn_A 213 VYDGVGQ-------DTWLTSLDSVAPRGLVVSFGNA 241 (325)
T ss_dssp EEESSCG-------GGHHHHHTTEEEEEEEEECCCT
T ss_pred EEECCCh-------HHHHHHHHHhcCCCEEEEEecC
Confidence 9864331 3577888999999999987654
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.099 Score=47.96 Aligned_cols=94 Identities=12% Similarity=0.031 Sum_probs=64.3
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC------CCCCcccE
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~fD~ 229 (379)
++.+||-+|+ |.|..+..+++..|++|+++|.++..++.+++ .|. . ..+..+-.+.. .....+|+
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga--~-~~~~~~~~~~~~~~~~~~~~~g~D~ 220 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKE----YGA--E-YLINASKEDILRQVLKFTNGKGVDA 220 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC--S-EEEETTTSCHHHHHHHHTTTSCEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC--c-EEEeCCCchHHHHHHHHhCCCCceE
Confidence 4899999994 46778888888778999999999988887765 232 1 12221111110 12346999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
|+..-.- ..+..+.+.|+|||++++....
T Consensus 221 vid~~g~-------~~~~~~~~~l~~~G~iv~~G~~ 249 (334)
T 3qwb_A 221 SFDSVGK-------DTFEISLAALKRKGVFVSFGNA 249 (334)
T ss_dssp EEECCGG-------GGHHHHHHHEEEEEEEEECCCT
T ss_pred EEECCCh-------HHHHHHHHHhccCCEEEEEcCC
Confidence 9865331 3577888999999999887643
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=94.69 E-value=0.041 Score=51.49 Aligned_cols=92 Identities=17% Similarity=0.190 Sum_probs=63.9
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC----C-----CCCCCc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ----Q-----PFPDGQ 226 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~----~-----~~~~~~ 226 (379)
++.+||-+|+|. |..+..+++..|+ +|+++|.++..++.+++ .|. . .++ |..+ . ....+.
T Consensus 191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa--~-~vi--~~~~~~~~~~~~~~~~~~~g 261 (374)
T 2jhf_A 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGA--T-ECV--NPQDYKKPIQEVLTEMSNGG 261 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTC--S-EEE--CGGGCSSCHHHHHHHHTTSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCC--c-eEe--cccccchhHHHHHHHHhCCC
Confidence 489999999875 7788888887787 89999999988887764 332 1 112 2221 1 011246
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCC-CEEEEEec
Q 016981 227 FDLVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (379)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~i~~~ 264 (379)
+|+|+-.-. . ...+..+.+.|++| |++++...
T Consensus 262 ~D~vid~~g-----~-~~~~~~~~~~l~~~~G~iv~~G~ 294 (374)
T 2jhf_A 262 VDFSFEVIG-----R-LDTMVTALSCCQEAYGVSVIVGV 294 (374)
T ss_dssp BSEEEECSC-----C-HHHHHHHHHHBCTTTCEEEECSC
T ss_pred CcEEEECCC-----C-HHHHHHHHHHhhcCCcEEEEecc
Confidence 999975321 1 45688899999999 99988664
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.16 Score=47.31 Aligned_cols=92 Identities=17% Similarity=0.199 Sum_probs=64.1
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC----C-----CCCCCc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ----Q-----PFPDGQ 226 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~----~-----~~~~~~ 226 (379)
++.+||-+|+|. |..+..+++..|+ +|+++|.++..++.+++. |. + .++ |..+ . ....+.
T Consensus 190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga-~--~vi--~~~~~~~~~~~~v~~~~~~g 260 (373)
T 2fzw_A 190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GA-T--ECI--NPQDFSKPIQEVLIEMTDGG 260 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TC-S--EEE--CGGGCSSCHHHHHHHHTTSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CC-c--eEe--ccccccccHHHHHHHHhCCC
Confidence 489999999874 7788888887787 899999999888887652 32 1 112 2211 1 011246
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCC-CEEEEEec
Q 016981 227 FDLVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (379)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~i~~~ 264 (379)
+|+|+-.-. . ...+..+.+.|+|| |++++...
T Consensus 261 ~D~vid~~g-----~-~~~~~~~~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 261 VDYSFECIG-----N-VKVMRAALEACHKGWGVSVVVGV 293 (373)
T ss_dssp BSEEEECSC-----C-HHHHHHHHHTBCTTTCEEEECSC
T ss_pred CCEEEECCC-----c-HHHHHHHHHhhccCCcEEEEEec
Confidence 999985421 1 45688899999999 99988764
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=94.59 E-value=0.018 Score=53.64 Aligned_cols=95 Identities=20% Similarity=0.197 Sum_probs=62.3
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC-CC--CCCCCcccEEEec
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL-QQ--PFPDGQFDLVWSM 233 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~-~~--~~~~~~fD~V~~~ 233 (379)
++.+||-+|+|. |..+..+++..|++|+++|.++..++.+++ .|. . .++..+-. +. ... +.+|+|+-.
T Consensus 179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~----lGa--~-~v~~~~~~~~~~~~~~-~~~D~vid~ 250 (360)
T 1piw_A 179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK----MGA--D-HYIATLEEGDWGEKYF-DTFDLIVVC 250 (360)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH----HTC--S-EEEEGGGTSCHHHHSC-SCEEEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH----cCC--C-EEEcCcCchHHHHHhh-cCCCEEEEC
Confidence 389999999864 778888888778899999999888887765 232 1 12221111 11 111 469999865
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
-.-.. ...++.+.++|+|||++++...
T Consensus 251 ~g~~~----~~~~~~~~~~l~~~G~iv~~g~ 277 (360)
T 1piw_A 251 ASSLT----DIDFNIMPKAMKVGGRIVSISI 277 (360)
T ss_dssp CSCST----TCCTTTGGGGEEEEEEEEECCC
T ss_pred CCCCc----HHHHHHHHHHhcCCCEEEEecC
Confidence 43200 1225566789999999988654
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.52 E-value=0.096 Score=47.34 Aligned_cols=97 Identities=20% Similarity=0.285 Sum_probs=57.8
Q ss_pred CCeEEEEccCCCC--CCCCCcccEEEeccccCCCCC--------------------HHHHHHHHHHhcCCCCEEEEEecc
Q 016981 208 DKVSFQVGDALQQ--PFPDGQFDLVWSMESGEHMPD--------------------KSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 208 ~~i~~~~~d~~~~--~~~~~~fD~V~~~~~l~~~~~--------------------~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
.++.++++|..+. .+++++||+|+++=-.....+ ...+++++.++|||||.+++..-.
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d 99 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD 99 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence 3578999998773 356789999998644322111 135778999999999999886421
Q ss_pred CCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEecCC
Q 016981 266 HRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (379)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 321 (379)
... . ... . ......+ -...+..+++++||.......|..
T Consensus 100 ~~~--~----~~~-----~---g~~~~~~---~~~~l~~~~~~~Gf~~~~~iiW~K 138 (297)
T 2zig_A 100 VAV--A----RRR-----F---GRHLVFP---LHADIQVRCRKLGFDNLNPIIWHK 138 (297)
T ss_dssp EEE--E----CC------------EEEEC---HHHHHHHHHHHTTCEEEEEEEEEC
T ss_pred Ccc--c----ccc-----C---Ccccccc---cHHHHHHHHHHcCCeeeccEEEeC
Confidence 000 0 000 0 0000000 134577889999998877666654
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.13 Score=47.46 Aligned_cols=92 Identities=18% Similarity=0.195 Sum_probs=63.9
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--------CCCCcc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~f 227 (379)
++.+||-+|+|. |..+..+++..|+ +|+++|.++..++.+++. |. -.++ |..+.. .....+
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----Ga---~~~~--~~~~~~~~~~v~~~~~g~g~ 237 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----GA---DYVI--NPFEEDVVKEVMDITDGNGV 237 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----TC---SEEE--CTTTSCHHHHHHHHTTTSCE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CC---CEEE--CCCCcCHHHHHHHHcCCCCC
Confidence 488999999863 7778888887788 899999999888877642 32 1111 222111 112369
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|+|+..-. ....++.+.+.|++||++++...
T Consensus 238 D~vid~~g------~~~~~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 238 DVFLEFSG------APKALEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp EEEEECSC------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred CEEEECCC------CHHHHHHHHHHHhcCCEEEEEcc
Confidence 99985432 14568889999999999888764
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.033 Score=52.22 Aligned_cols=93 Identities=24% Similarity=0.313 Sum_probs=64.9
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC--CCC-------CCCCc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL--QQP-------FPDGQ 226 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~--~~~-------~~~~~ 226 (379)
++.+||=+|+|. |..+..+++..|+ +|+++|.++..++.+++ .|.. .++ |.. +.. ..++.
T Consensus 193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi--~~~~~~~~~~~~i~~~~~gg 263 (378)
T 3uko_A 193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGVN---EFV--NPKDHDKPIQEVIVDLTDGG 263 (378)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTCC---EEE--CGGGCSSCHHHHHHHHTTSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---EEE--ccccCchhHHHHHHHhcCCC
Confidence 488999999874 7888888887787 89999999988887764 3321 112 222 111 12347
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCC-CEEEEEecc
Q 016981 227 FDLVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTWC 265 (379)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~i~~~~ 265 (379)
+|+|+-.-. . ...+..+.+.|++| |++++....
T Consensus 264 ~D~vid~~g-----~-~~~~~~~~~~l~~g~G~iv~~G~~ 297 (378)
T 3uko_A 264 VDYSFECIG-----N-VSVMRAALECCHKGWGTSVIVGVA 297 (378)
T ss_dssp BSEEEECSC-----C-HHHHHHHHHTBCTTTCEEEECSCC
T ss_pred CCEEEECCC-----C-HHHHHHHHHHhhccCCEEEEEccc
Confidence 999985321 1 46788999999997 999887653
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.04 Score=51.58 Aligned_cols=92 Identities=18% Similarity=0.208 Sum_probs=63.9
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC--CC-------CCCCc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QP-------FPDGQ 226 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~-------~~~~~ 226 (379)
++.+||-+|+|. |..+..+++..|+ +|+++|.++..++.+++ .|. . .++ |..+ .. ...+.
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa--~-~vi--~~~~~~~~~~~~v~~~~~~g 265 (376)
T 1e3i_A 195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGA--T-DCL--NPRELDKPVQDVITELTAGG 265 (376)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTC--S-EEE--CGGGCSSCHHHHHHHHHTSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCC--c-EEE--ccccccchHHHHHHHHhCCC
Confidence 489999999874 7788888888787 89999999988887764 332 1 111 2221 00 11236
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCC-CEEEEEec
Q 016981 227 FDLVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (379)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~i~~~ 264 (379)
+|+|+-.-. . ...+..+.+.|++| |++++...
T Consensus 266 ~Dvvid~~G-----~-~~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 266 VDYSLDCAG-----T-AQTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp BSEEEESSC-----C-HHHHHHHHHTBCTTTCEEEECCC
T ss_pred ccEEEECCC-----C-HHHHHHHHHHhhcCCCEEEEECC
Confidence 999974321 1 45788999999999 99988664
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.11 Score=48.00 Aligned_cols=92 Identities=20% Similarity=0.268 Sum_probs=63.0
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC------CCCCcccE
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~fD~ 229 (379)
++.+||-+|+ |.|..+..+++..|++|++++.++..++.+++. |. . .+...+ .+.. .....+|+
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga--~-~v~~~~-~~~~~~v~~~~~~~g~Dv 230 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSV----GA--D-IVLPLE-EGWAKAVREATGGAGVDM 230 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TC--S-EEEESS-TTHHHHHHHHTTTSCEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CC--c-EEecCc-hhHHHHHHHHhCCCCceE
Confidence 4899999997 568888888888899999999999888877763 32 1 122222 2110 12236999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|+-.-.- ..+..+.+.|++||++++...
T Consensus 231 vid~~g~-------~~~~~~~~~l~~~G~iv~~G~ 258 (342)
T 4eye_A 231 VVDPIGG-------PAFDDAVRTLASEGRLLVVGF 258 (342)
T ss_dssp EEESCC---------CHHHHHHTEEEEEEEEEC--
T ss_pred EEECCch-------hHHHHHHHhhcCCCEEEEEEc
Confidence 9865332 247788899999999998764
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.061 Score=50.08 Aligned_cols=93 Identities=16% Similarity=0.111 Sum_probs=64.3
Q ss_pred CCCEEEEeC--CcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-----CCCCCcccEE
Q 016981 158 RPKNVVDVG--CGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiG--cGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~fD~V 230 (379)
++.+||-+| .|.|..+..+++..|++|++++.++..++.+++ .|. . .++..+-.+. ....+.+|+|
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~----~Ga--~-~~~~~~~~~~~~~~~~~~~~g~D~v 235 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS----LGC--D-RPINYKTEPVGTVLKQEYPEGVDVV 235 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC--S-EEEETTTSCHHHHHHHHCTTCEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----cCC--c-EEEecCChhHHHHHHHhcCCCCCEE
Confidence 389999999 456888888888778899999999988887765 332 1 1222111111 0112469999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+..-. . ..++.+.+.|++||++++...
T Consensus 236 id~~g-----~--~~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 236 YESVG-----G--AMFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp EECSC-----T--HHHHHHHHHEEEEEEEEECCC
T ss_pred EECCC-----H--HHHHHHHHHHhcCCEEEEEeC
Confidence 86532 1 578889999999999888764
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.093 Score=48.69 Aligned_cols=89 Identities=16% Similarity=0.194 Sum_probs=61.2
Q ss_pred CEEEEeCCc-ccHHH-HHHH-HHcCCE-EEEEeCCHH---HHHHHHHHHHHcCCCCCeEEEEccCCCCCCC-----CCcc
Q 016981 160 KNVVDVGCG-IGGSS-RYLA-KKFGAK-CQGITLSPV---QAQRANALAAARGLADKVSFQVGDALQQPFP-----DGQF 227 (379)
Q Consensus 160 ~~vLDiGcG-tG~~~-~~l~-~~~~~~-v~gvD~s~~---~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-----~~~f 227 (379)
.+||-+|+| .|..+ ..++ +..|++ |+++|.++. .++.+++ .| .... |..+..+. .+.+
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----lG----a~~v--~~~~~~~~~i~~~~gg~ 243 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----LD----ATYV--DSRQTPVEDVPDVYEQM 243 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----TT----CEEE--ETTTSCGGGHHHHSCCE
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----cC----Cccc--CCCccCHHHHHHhCCCC
Confidence 899999975 37778 8888 766876 999999887 7777654 23 2222 33321111 2368
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|+|+-.-. . ...+..+.++|+|||++++...
T Consensus 244 Dvvid~~g-----~-~~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 244 DFIYEATG-----F-PKHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp EEEEECSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred CEEEECCC-----C-hHHHHHHHHHHhcCCEEEEEeC
Confidence 99874321 1 3568889999999999988764
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.098 Score=48.23 Aligned_cols=94 Identities=16% Similarity=0.140 Sum_probs=65.7
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC------CCCCcccE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~fD~ 229 (379)
++.+||-+|+|. |..+..+++.. +.+|+++|.++..++.+++ .|.. .++..+- +.. .....+|+
T Consensus 171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~---~~i~~~~-~~~~~v~~~t~g~g~d~ 242 (345)
T 3jv7_A 171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGAD---AAVKSGA-GAADAIRELTGGQGATA 242 (345)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCS---EEEECST-THHHHHHHHHGGGCEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC---EEEcCCC-cHHHHHHHHhCCCCCeE
Confidence 489999999875 88888899877 7899999999998888765 3321 1221111 110 11236899
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
|+-.-. . ...+..+.+.|+|||++++....
T Consensus 243 v~d~~G-----~-~~~~~~~~~~l~~~G~iv~~G~~ 272 (345)
T 3jv7_A 243 VFDFVG-----A-QSTIDTAQQVVAVDGHISVVGIH 272 (345)
T ss_dssp EEESSC-----C-HHHHHHHHHHEEEEEEEEECSCC
T ss_pred EEECCC-----C-HHHHHHHHHHHhcCCEEEEECCC
Confidence 885321 1 45788999999999999987644
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.92 Score=46.03 Aligned_cols=174 Identities=12% Similarity=0.049 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc---------CCEEEEEeCCHHHHHHHHHHHHHcC--
Q 016981 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF---------GAKCQGITLSPVQAQRANALAAARG-- 205 (379)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~---------~~~v~gvD~s~~~~~~a~~~~~~~~-- 205 (379)
+....+.++++... . .+...|+-+|||.=.....+.... +..++=+|.. ..++.=++.++...
T Consensus 91 ~~d~~v~~fl~~~~-~----~~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p-~v~~~K~~~l~~~~~l 164 (695)
T 2zwa_A 91 AIRSRLNSIIEQTP-Q----DKKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYS-DLLKIKIELIKTIPEL 164 (695)
T ss_dssp HHHHHHHHHHHHSC-T----TSEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECH-HHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhccc-C----CCCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccH-HHHHHHHHHHHcChHH
Confidence 44455555555430 1 125789999999988887776541 3456667773 44443333343211
Q ss_pred ------------CC---------CCeEEEEccCCCCC----------C-CCCcccEEEeccccCCCCC--HHHHHHHHHH
Q 016981 206 ------------LA---------DKVSFQVGDALQQP----------F-PDGQFDLVWSMESGEHMPD--KSKFVSELAR 251 (379)
Q Consensus 206 ------------~~---------~~i~~~~~d~~~~~----------~-~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r 251 (379)
.+ ++..++.+|+.+.. + .....-++++-.++.+++. ..++|+.+.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~ 244 (695)
T 2zwa_A 165 SKIIGLSEDKDYVDDSNVDFLTTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK 244 (695)
T ss_dssp HHHTTCCSSCSSCSCTTCCCEECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT
T ss_pred HHhhccccccccccccccccccCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh
Confidence 00 36788889987731 2 3344567777888899864 3678888875
Q ss_pred hcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc-CCCCCCCHHHHHHHHHhCCCceeEEEecC
Q 016981 252 VTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY-YLPAWCSTADYVKLLQSLSLEDIKAEDWS 320 (379)
Q Consensus 252 ~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 320 (379)
+ |+|.+++.+...+.. ....+...+...+......+ ....+.+.++..+.|.++||+.+...++.
T Consensus 245 -~-~~~~~~~~e~~~~~~--~~d~f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~~ 310 (695)
T 2zwa_A 245 -M-ENSHFIILEQLIPKG--PFEPFSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDMF 310 (695)
T ss_dssp -S-SSEEEEEEEECCTTC--TTSHHHHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEHH
T ss_pred -C-CCceEEEEEeecCCC--CCChHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeHH
Confidence 4 677777777543321 11222222222222211111 11235589999999999999987776543
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.22 Score=46.27 Aligned_cols=91 Identities=19% Similarity=0.301 Sum_probs=63.9
Q ss_pred CCCEEEEeC-Cc-ccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-C-----CCCCCccc
Q 016981 158 RPKNVVDVG-CG-IGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q-----PFPDGQFD 228 (379)
Q Consensus 158 ~~~~vLDiG-cG-tG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-----~~~~~~fD 228 (379)
++.+||=+| +| .|..+..+++.. +++|+++|.++..++.+++ .|. . .++ |..+ . ....+.+|
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGa--d-~vi--~~~~~~~~~v~~~~~~g~D 241 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGA--H-HVI--DHSKPLAAEVAALGLGAPA 241 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTC--S-EEE--CTTSCHHHHHHTTCSCCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCC--C-EEE--eCCCCHHHHHHHhcCCCce
Confidence 478999998 44 588999999874 8899999999988888765 332 1 111 2211 0 12235799
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+|+-.- .....+..+.++|+|||++++..
T Consensus 242 vvid~~------g~~~~~~~~~~~l~~~G~iv~~g 270 (363)
T 4dvj_A 242 FVFSTT------HTDKHAAEIADLIAPQGRFCLID 270 (363)
T ss_dssp EEEECS------CHHHHHHHHHHHSCTTCEEEECS
T ss_pred EEEECC------CchhhHHHHHHHhcCCCEEEEEC
Confidence 987532 12457889999999999998863
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=94.19 E-value=0.35 Score=45.25 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=35.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--------CCEEEEEeCCHHHHHHHHHHHH
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--------GAKCQGITLSPVQAQRANALAA 202 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--------~~~v~gvD~s~~~~~~a~~~~~ 202 (379)
+.+|+|+|.|+|.++..+.+.. ..+++.||+|+...+.-++++.
T Consensus 81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~ 132 (387)
T 1zkd_A 81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA 132 (387)
T ss_dssp SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhc
Confidence 5689999999999988887542 2489999999988876666554
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=94.09 E-value=0.12 Score=47.45 Aligned_cols=67 Identities=13% Similarity=0.006 Sum_probs=50.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC-CCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~V~~~ 233 (379)
+.+++|+.||.|.++..+.......|.++|+++.+++..+.++.. .. .+|+.++.. .-..+|+|+..
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~------~~--~~Di~~~~~~~~~~~D~l~~g 78 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE------KP--EGDITQVNEKTIPDHDILCAG 78 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC------CC--BSCGGGSCGGGSCCCSEEEEE
T ss_pred CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCC------CC--cCCHHHcCHhhCCCCCEEEEC
Confidence 579999999999999998876333577899999999998888732 11 577776531 11358999865
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.53 Score=36.86 Aligned_cols=87 Identities=13% Similarity=0.125 Sum_probs=54.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----CCCCcccEEE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVW 231 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~ 231 (379)
..+|+=+||| .++..+++.+ |.+|+++|.++..++.+++ ..+.++.+|..+.. ..-..+|+|+
T Consensus 6 ~~~v~I~G~G--~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~--------~~~~~~~gd~~~~~~l~~~~~~~~d~vi 75 (141)
T 3llv_A 6 RYEYIVIGSE--AAGVGLVRELTAAGKKVLAVDKSKEKIELLED--------EGFDAVIADPTDESFYRSLDLEGVSAVL 75 (141)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH--------TTCEEEECCTTCHHHHHHSCCTTCSEEE
T ss_pred CCEEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH--------CCCcEEECCCCCHHHHHhCCcccCCEEE
Confidence 4679999985 4555555443 7899999999988776654 24677888876631 1234688887
Q ss_pred eccccCCCCCH--HHHHHHHHHhcCCCCEEEE
Q 016981 232 SMESGEHMPDK--SKFVSELARVTAPAGTIII 261 (379)
Q Consensus 232 ~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i 261 (379)
.... +. ...+....+.+. ...++.
T Consensus 76 ~~~~-----~~~~n~~~~~~a~~~~-~~~iia 101 (141)
T 3llv_A 76 ITGS-----DDEFNLKILKALRSVS-DVYAIV 101 (141)
T ss_dssp ECCS-----CHHHHHHHHHHHHHHC-CCCEEE
T ss_pred EecC-----CHHHHHHHHHHHHHhC-CceEEE
Confidence 6432 32 233444455555 555544
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.071 Score=48.66 Aligned_cols=91 Identities=14% Similarity=0.202 Sum_probs=62.8
Q ss_pred EEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CCCCCcccEEEeccccC
Q 016981 161 NVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMESGE 237 (379)
Q Consensus 161 ~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~V~~~~~l~ 237 (379)
+||=+|+ |.|..+..+++..|++|++++.++...+.+++. |. ..-+-..+.... ....+.+|+|+-.-
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga--~~vi~~~~~~~~~~~~~~~~d~v~d~~--- 219 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSL----GA--NRILSRDEFAESRPLEKQLWAGAIDTV--- 219 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH----TC--SEEEEGGGSSCCCSSCCCCEEEEEESS---
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CC--CEEEecCCHHHHHhhcCCCccEEEECC---
Confidence 4999986 568899999998899999999999888888762 32 111111111111 12345799887432
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
. ...+..+.+.|+|+|++++...
T Consensus 220 --g--~~~~~~~~~~l~~~G~iv~~G~ 242 (324)
T 3nx4_A 220 --G--DKVLAKVLAQMNYGGCVAACGL 242 (324)
T ss_dssp --C--HHHHHHHHHTEEEEEEEEECCC
T ss_pred --C--cHHHHHHHHHHhcCCEEEEEec
Confidence 2 2378999999999999988764
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.00 E-value=0.2 Score=46.33 Aligned_cols=90 Identities=17% Similarity=0.222 Sum_probs=62.4
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--------CCCCcc
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~f 227 (379)
++.+||-.|+ |.|..+..+++..|++|+++|.++..++.+++ .|. . .. .|..+.. .....+
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga--~-~~--~d~~~~~~~~~~~~~~~~~~~ 240 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGA--H-EV--FNHREVNYIDKIKKYVGEKGI 240 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC--S-EE--EETTSTTHHHHHHHHHCTTCE
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHH----cCC--C-EE--EeCCCchHHHHHHHHcCCCCc
Confidence 4899999996 56777777887778999999999988776654 232 1 11 2322211 112369
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|+|+.+-. ...+....++|+|||++++..
T Consensus 241 D~vi~~~G-------~~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 241 DIIIEMLA-------NVNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp EEEEESCH-------HHHHHHHHHHEEEEEEEEECC
T ss_pred EEEEECCC-------hHHHHHHHHhccCCCEEEEEe
Confidence 99986533 235778899999999998866
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.94 E-value=0.19 Score=45.82 Aligned_cols=91 Identities=15% Similarity=0.073 Sum_probs=62.9
Q ss_pred CCCEEEEeC--CcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--------CCCCcc
Q 016981 158 RPKNVVDVG--CGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (379)
Q Consensus 158 ~~~~vLDiG--cGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~f 227 (379)
++.+||-.| +|.|..+..+++..|++|+++|.++..++.+++. +. .. .. |..+.. .....+
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~----g~--~~-~~--~~~~~~~~~~~~~~~~~~~~ 210 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----GA--WQ-VI--NYREEDLVERLKEITGGKKV 210 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TC--SE-EE--ETTTSCHHHHHHHHTTTCCE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CC--CE-EE--ECCCccHHHHHHHHhCCCCc
Confidence 489999999 4567777777776688999999999888877652 32 11 11 322211 112469
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|+|+.+-. ...++.+.+.|++||++++...
T Consensus 211 D~vi~~~g-------~~~~~~~~~~l~~~G~iv~~g~ 240 (327)
T 1qor_A 211 RVVYDSVG-------RDTWERSLDCLQRRGLMVSFGN 240 (327)
T ss_dssp EEEEECSC-------GGGHHHHHHTEEEEEEEEECCC
T ss_pred eEEEECCc-------hHHHHHHHHHhcCCCEEEEEec
Confidence 99986543 2457888999999999988764
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.85 E-value=0.17 Score=47.28 Aligned_cols=95 Identities=18% Similarity=0.127 Sum_probs=64.0
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc---CCC----C-C-CCCCc
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGD---ALQ----Q-P-FPDGQ 226 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d---~~~----~-~-~~~~~ 226 (379)
++.+||-+|+| .|..+..+++..| .+|+++|.++..++.+++ .|. . .++..+ -.+ + . .....
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa--~-~vi~~~~~~~~~~~~~v~~~~~g~g 267 (380)
T 1vj0_A 195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGA--D-LTLNRRETSVEERRKAIMDITHGRG 267 (380)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTC--S-EEEETTTSCHHHHHHHHHHHTTTSC
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCC--c-EEEeccccCcchHHHHHHHHhCCCC
Confidence 48999999976 4778888888778 599999999988888764 332 1 122211 001 0 0 11236
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+|+|+-.-.- ...+..+.++|+|||++++....
T Consensus 268 ~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~G~~ 300 (380)
T 1vj0_A 268 ADFILEATGD------SRALLEGSELLRRGGFYSVAGVA 300 (380)
T ss_dssp EEEEEECSSC------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred CcEEEECCCC------HHHHHHHHHHHhcCCEEEEEecC
Confidence 9999854321 23578889999999999887643
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.31 Score=45.00 Aligned_cols=91 Identities=12% Similarity=0.110 Sum_probs=62.4
Q ss_pred C--CEEEEeCC--cccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-------CCCCc
Q 016981 159 P--KNVVDVGC--GIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQ 226 (379)
Q Consensus 159 ~--~~vLDiGc--GtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~ 226 (379)
+ .+||-.|+ |.|..+..+++..|+ +|+++|.++..++.+++. .|. .. . .|..+.. ...+.
T Consensus 159 g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~g~--~~-~--~d~~~~~~~~~~~~~~~~~ 230 (357)
T 2zb4_A 159 GSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---LGF--DA-A--INYKKDNVAEQLRESCPAG 230 (357)
T ss_dssp TSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---SCC--SE-E--EETTTSCHHHHHHHHCTTC
T ss_pred CCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---cCC--ce-E--EecCchHHHHHHHHhcCCC
Confidence 7 89999997 456777777776688 999999998777766542 232 11 1 2322211 11226
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+|+|+.+-. ...+..+.++|++||++++...
T Consensus 231 ~d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~G~ 261 (357)
T 2zb4_A 231 VDVYFDNVG-------GNISDTVISQMNENSHIILCGQ 261 (357)
T ss_dssp EEEEEESCC-------HHHHHHHHHTEEEEEEEEECCC
T ss_pred CCEEEECCC-------HHHHHHHHHHhccCcEEEEECC
Confidence 899986543 2678889999999999988764
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.22 Score=46.03 Aligned_cols=92 Identities=21% Similarity=0.268 Sum_probs=63.9
Q ss_pred CCCEEEEeC--CcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-------CCCCccc
Q 016981 158 RPKNVVDVG--CGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQFD 228 (379)
Q Consensus 158 ~~~~vLDiG--cGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~fD 228 (379)
++.+||-+| .|.|..+..+++..|++|+++|.++..++.+++. |. . ..+ |..+.. ...+.+|
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----Ga--~-~~~--~~~~~~~~~~~~~~~~~g~D 237 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERL----GA--K-RGI--NYRSEDFAAVIKAETGQGVD 237 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TC--S-EEE--ETTTSCHHHHHHHHHSSCEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CC--C-EEE--eCCchHHHHHHHHHhCCCce
Confidence 489999995 3467888888887799999999999988887752 32 1 122 222211 0134699
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+|+..-.- ..+..+.+.|++||++++....
T Consensus 238 vvid~~g~-------~~~~~~~~~l~~~G~iv~~g~~ 267 (353)
T 4dup_A 238 IILDMIGA-------AYFERNIASLAKDGCLSIIAFL 267 (353)
T ss_dssp EEEESCCG-------GGHHHHHHTEEEEEEEEECCCT
T ss_pred EEEECCCH-------HHHHHHHHHhccCCEEEEEEec
Confidence 99865332 2577888999999999887643
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=93.70 E-value=0.23 Score=46.14 Aligned_cols=88 Identities=14% Similarity=0.197 Sum_probs=60.0
Q ss_pred CCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCH---HHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC------CCccc
Q 016981 159 PKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSP---VQAQRANALAAARGLADKVSFQVGDALQQPFP------DGQFD 228 (379)
Q Consensus 159 ~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~---~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~------~~~fD 228 (379)
+.+||-+|+|. |..+..+++..|++|+++|.++ ..++.+++ .| .... | .+ .+. .+.+|
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~----~g----a~~v--~-~~-~~~~~~~~~~~~~d 248 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEE----TK----TNYY--N-SS-NGYDKLKDSVGKFD 248 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHH----HT----CEEE--E-CT-TCSHHHHHHHCCEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHH----hC----Ccee--c-hH-HHHHHHHHhCCCCC
Confidence 78999999853 6667777776688999999987 66666654 23 2222 3 22 111 14699
Q ss_pred EEEeccccCCCCCHHHHH-HHHHHhcCCCCEEEEEec
Q 016981 229 LVWSMESGEHMPDKSKFV-SELARVTAPAGTIIIVTW 264 (379)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l-~~~~r~LkpgG~l~i~~~ 264 (379)
+|+..-... ..+ +.+.+.|++||++++...
T Consensus 249 ~vid~~g~~------~~~~~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 249 VIIDATGAD------VNILGNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp EEEECCCCC------THHHHHHGGGEEEEEEEEECSC
T ss_pred EEEECCCCh------HHHHHHHHHHHhcCCEEEEEec
Confidence 998653321 245 888999999999988754
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=93.65 E-value=0.27 Score=45.42 Aligned_cols=91 Identities=16% Similarity=0.100 Sum_probs=62.3
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--------CCCCcc
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~f 227 (379)
++.+||-.|+ |.|..+..+++..|++|+++|.++..++.+++. |. .. . .|..+.. .....+
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----g~--~~-~--~~~~~~~~~~~~~~~~~~~~~ 232 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKL----GA--AA-G--FNYKKEDFSEATLKFTKGAGV 232 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----TC--SE-E--EETTTSCHHHHHHHHTTTSCE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CC--cE-E--EecCChHHHHHHHHHhcCCCc
Confidence 4899999984 567777777777789999999999888877442 32 11 1 1222211 122469
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|+|+.+-.- ..+..+.++|++||++++...
T Consensus 233 d~vi~~~G~-------~~~~~~~~~l~~~G~iv~~G~ 262 (354)
T 2j8z_A 233 NLILDCIGG-------SYWEKNVNCLALDGRWVLYGL 262 (354)
T ss_dssp EEEEESSCG-------GGHHHHHHHEEEEEEEEECCC
T ss_pred eEEEECCCc-------hHHHHHHHhccCCCEEEEEec
Confidence 999865432 247778899999999988764
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.01 Score=54.90 Aligned_cols=91 Identities=16% Similarity=0.210 Sum_probs=62.3
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC-------CCCccc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-------PDGQFD 228 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------~~~~fD 228 (379)
++.+||-+|+|. |..+..+++..|+ +|+++|.++..++.+++. . . .+ .|..+..+ ....+|
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a-----~--~v--~~~~~~~~~~~~~~~~~~g~D 233 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A-----D--RL--VNPLEEDLLEVVRRVTGSGVE 233 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C-----S--EE--ECTTTSCHHHHHHHHHSSCEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H-----H--hc--cCcCccCHHHHHHHhcCCCCC
Confidence 488999999853 7778888887788 899999999887766542 1 1 11 22221110 124689
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+|+-.-. . ...++.+.+.|++||++++...
T Consensus 234 ~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~g~ 263 (343)
T 2dq4_A 234 VLLEFSG-----N-EAAIHQGLMALIPGGEARILGI 263 (343)
T ss_dssp EEEECSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred EEEECCC-----C-HHHHHHHHHHHhcCCEEEEEec
Confidence 9985422 1 4568889999999999888654
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.11 Score=48.20 Aligned_cols=95 Identities=17% Similarity=0.134 Sum_probs=60.2
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CCCCCcccEEEeccc
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMES 235 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~V~~~~~ 235 (379)
++.+||-+|+| .|..+..+++..|++|+++|.++..++.+++. .|. +.+ +-..+.... .. .+.+|+|+-.-.
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~---lGa-~~v-i~~~~~~~~~~~-~~g~D~vid~~g 253 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQD---LGA-DDY-VIGSDQAKMSEL-ADSLDYVIDTVP 253 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTT---SCC-SCE-EETTCHHHHHHS-TTTEEEEEECCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHH---cCC-cee-eccccHHHHHHh-cCCCCEEEECCC
Confidence 38999999976 36777888887789999999998777666522 232 111 111110001 11 136999985432
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
-. ..+....++|+|||++++...
T Consensus 254 ~~------~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T 2cf5_A 254 VH------HALEPYLSLLKLDGKLILMGV 276 (357)
T ss_dssp SC------CCSHHHHTTEEEEEEEEECSC
T ss_pred Ch------HHHHHHHHHhccCCEEEEeCC
Confidence 21 125667789999999988764
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=93.17 E-value=0.16 Score=47.33 Aligned_cols=92 Identities=27% Similarity=0.268 Sum_probs=60.0
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC---C-CCCCCcccEEEe
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ---Q-PFPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~---~-~~~~~~fD~V~~ 232 (379)
++.+||-+|+|. |..+..+++..|++|+++|.++..++.+++. .|. . .++ |..+ + .. .+.+|+|+.
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---lGa--~-~v~--~~~~~~~~~~~-~~~~D~vid 257 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKN---FGA--D-SFL--VSRDQEQMQAA-AGTLDGIID 257 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHT---SCC--S-EEE--ETTCHHHHHHT-TTCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh---cCC--c-eEE--eccCHHHHHHh-hCCCCEEEE
Confidence 388999999763 6777788887789999999998777665532 232 1 111 2211 1 01 146999986
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.-.... .++.+.+.|++||+++....
T Consensus 258 ~~g~~~------~~~~~~~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 258 TVSAVH------PLLPLFGLLKSHGKLILVGA 283 (366)
T ss_dssp CCSSCC------CSHHHHHHEEEEEEEEECCC
T ss_pred CCCcHH------HHHHHHHHHhcCCEEEEEcc
Confidence 533221 24566788999999887654
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=93.17 E-value=0.52 Score=45.20 Aligned_cols=92 Identities=24% Similarity=0.258 Sum_probs=64.5
Q ss_pred CCCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-------------
Q 016981 157 KRPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------------- 221 (379)
Q Consensus 157 ~~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------------- 221 (379)
.++.+||=+|+ |.|..+..+++..|++|++++.++..++.+++. |.. .++ |..+..
T Consensus 227 ~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~l----Ga~---~vi--~~~~~d~~~~~~~~~~~~~ 297 (456)
T 3krt_A 227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAM----GAE---AII--DRNAEGYRFWKDENTQDPK 297 (456)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCC---EEE--ETTTTTCCSEEETTEECHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhh----CCc---EEE--ecCcCcccccccccccchH
Confidence 35899999997 468888899988899999999999888887652 321 111 111111
Q ss_pred ------------CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 222 ------------FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 222 ------------~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.....+|+|+-.-. ...+..+.++|++||++++...
T Consensus 298 ~~~~~~~~i~~~t~g~g~Dvvid~~G-------~~~~~~~~~~l~~~G~iv~~G~ 345 (456)
T 3krt_A 298 EWKRFGKRIRELTGGEDIDIVFEHPG-------RETFGASVFVTRKGGTITTCAS 345 (456)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECSC-------HHHHHHHHHHEEEEEEEEESCC
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEcCC-------chhHHHHHHHhhCCcEEEEEec
Confidence 11247999875322 2578888999999999988654
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=93.16 E-value=0.42 Score=43.95 Aligned_cols=91 Identities=14% Similarity=0.267 Sum_probs=62.7
Q ss_pred CCCEEEEeC-Cc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-C-----CCCCCcccE
Q 016981 158 RPKNVVDVG-CG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q-----PFPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiG-cG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-----~~~~~~fD~ 229 (379)
++.+||=+| +| .|..+..+++..|++|+++|.++..++.+++. |. + .++ |..+ . ....+.+|+
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga-~--~vi--~~~~~~~~~~~~~~~~g~Dv 220 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKM----GA-D--IVL--NHKESLLNQFKTQGIELVDY 220 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHH----TC-S--EEE--CTTSCHHHHHHHHTCCCEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CC-c--EEE--ECCccHHHHHHHhCCCCccE
Confidence 488999994 44 57888888887789999999999988887762 32 1 111 2111 0 012346999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|+-.- .....+..+.++|+|||+++...
T Consensus 221 v~d~~------g~~~~~~~~~~~l~~~G~iv~~~ 248 (346)
T 3fbg_A 221 VFCTF------NTDMYYDDMIQLVKPRGHIATIV 248 (346)
T ss_dssp EEESS------CHHHHHHHHHHHEEEEEEEEESS
T ss_pred EEECC------CchHHHHHHHHHhccCCEEEEEC
Confidence 98532 22566788999999999987643
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.10 E-value=0.12 Score=47.16 Aligned_cols=93 Identities=13% Similarity=0.182 Sum_probs=60.8
Q ss_pred CC-EEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC-CC-C-CCCCCcccEEEe
Q 016981 159 PK-NVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQ-Q-PFPDGQFDLVWS 232 (379)
Q Consensus 159 ~~-~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~-~-~~~~~~fD~V~~ 232 (379)
+. +||-+|+ |.|..+..+++..|++|++++.++..++.+++ .|.. .+ +-..+. .+ . ....+.+|+|+-
T Consensus 149 g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~----lGa~-~~-i~~~~~~~~~~~~~~~~~~d~vid 222 (328)
T 1xa0_A 149 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV----LGAK-EV-LAREDVMAERIRPLDKQRWAAAVD 222 (328)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH----TTCS-EE-EECC---------CCSCCEEEEEE
T ss_pred CCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cCCc-EE-EecCCcHHHHHHHhcCCcccEEEE
Confidence 54 8999997 56888888988888899999999877777754 3321 11 111111 01 1 122346999875
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.-. . ..+..+.+.|++||++++...
T Consensus 223 ~~g-----~--~~~~~~~~~l~~~G~~v~~G~ 247 (328)
T 1xa0_A 223 PVG-----G--RTLATVLSRMRYGGAVAVSGL 247 (328)
T ss_dssp CST-----T--TTHHHHHHTEEEEEEEEECSC
T ss_pred CCc-----H--HHHHHHHHhhccCCEEEEEee
Confidence 432 1 247788899999999988754
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=93.05 E-value=0.35 Score=44.15 Aligned_cols=92 Identities=17% Similarity=0.144 Sum_probs=63.2
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--------CCCCcc
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~f 227 (379)
++.+||-.|+ |.|..+..+++..|++|+++|.++..++.+++. |. .. .. |..+.. .....+
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~----g~--~~-~~--d~~~~~~~~~i~~~~~~~~~ 215 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKL----GC--HH-TI--NYSTQDFAEVVREITGGKGV 215 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TC--SE-EE--ETTTSCHHHHHHHHHTTCCE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CC--CE-EE--ECCCHHHHHHHHHHhCCCCC
Confidence 4899999995 567777777777788999999999888777652 32 11 11 322211 112469
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
|+|+.+-.- ..++.+.++|++||++++....
T Consensus 216 d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~g~~ 246 (333)
T 1wly_A 216 DVVYDSIGK-------DTLQKSLDCLRPRGMCAAYGHA 246 (333)
T ss_dssp EEEEECSCT-------TTHHHHHHTEEEEEEEEECCCT
T ss_pred eEEEECCcH-------HHHHHHHHhhccCCEEEEEecC
Confidence 999865332 3477888999999999887643
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=93.03 E-value=0.27 Score=45.16 Aligned_cols=97 Identities=13% Similarity=0.053 Sum_probs=60.2
Q ss_pred CCCEEEEeCCccc-HHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-C-C-CCCCcccEEEe
Q 016981 158 RPKNVVDVGCGIG-GSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q-P-FPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcGtG-~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~-~~~~~fD~V~~ 232 (379)
++.+||=+|+|.+ .++..+++.. +.+|+++|.++.-++.+++. |...-+.....|..+ . . .....+|.++.
T Consensus 163 ~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~----Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~~ 238 (348)
T 4eez_A 163 PGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKI----GADVTINSGDVNPVDEIKKITGGLGVQSAIV 238 (348)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHT----TCSEEEEC-CCCHHHHHHHHTTSSCEEEEEE
T ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhc----CCeEEEeCCCCCHHHHhhhhcCCCCceEEEE
Confidence 3899999999864 5566666655 78999999999887776652 321111111111111 0 0 12234666654
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
... -...+....+.|++||++++...
T Consensus 239 ~~~------~~~~~~~~~~~l~~~G~~v~~g~ 264 (348)
T 4eez_A 239 CAV------ARIAFEQAVASLKPMGKMVAVAV 264 (348)
T ss_dssp CCS------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred ecc------CcchhheeheeecCCceEEEEec
Confidence 211 15678889999999999988753
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=92.87 E-value=0.049 Score=49.29 Aligned_cols=90 Identities=19% Similarity=0.203 Sum_probs=60.9
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-CCCC--CCcccEEEe
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPFP--DGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~--~~~fD~V~~ 232 (379)
++.+||-+|+ |.|..+..+++..|++|+++|.++..++.+++ .|. . ... |..+ ..+. -+.+|+|+.
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga--~-~~~--~~~~~~~~~~~~~~~d~vid 195 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGA--E-EAA--TYAEVPERAKAWGGLDLVLE 195 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTC--S-EEE--EGGGHHHHHHHTTSEEEEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCC--C-EEE--ECCcchhHHHHhcCceEEEE
Confidence 4899999997 46788888888778899999999888777654 232 1 112 2211 1000 046999986
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
-.- ..++.+.+.|++||++++...
T Consensus 196 -~g~-------~~~~~~~~~l~~~G~~v~~g~ 219 (302)
T 1iz0_A 196 -VRG-------KEVEESLGLLAHGGRLVYIGA 219 (302)
T ss_dssp -CSC-------TTHHHHHTTEEEEEEEEEC--
T ss_pred -CCH-------HHHHHHHHhhccCCEEEEEeC
Confidence 321 247788899999999887654
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=92.68 E-value=1.2 Score=34.35 Aligned_cols=90 Identities=18% Similarity=0.111 Sum_probs=52.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----CCCCcccEEE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVW 231 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~ 231 (379)
+++|+=+|+ |.++..+++.+ +.+|+++|.++..++..++. . .+.+..+|..+.. ..-..+|+|+
T Consensus 4 ~m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~---~----~~~~~~~d~~~~~~l~~~~~~~~d~vi 74 (140)
T 1lss_A 4 GMYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---I----DALVINGDCTKIKTLEDAGIEDADMYI 74 (140)
T ss_dssp -CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---C----SSEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh---c----CcEEEEcCCCCHHHHHHcCcccCCEEE
Confidence 568998887 45555544433 78999999998776654432 1 3456667764321 1124689888
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCCEEEE
Q 016981 232 SMESGEHMPDKSKFVSELARVTAPAGTIII 261 (379)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i 261 (379)
..-.- ......+..+.+.++++ .+++
T Consensus 75 ~~~~~---~~~~~~~~~~~~~~~~~-~ii~ 100 (140)
T 1lss_A 75 AVTGK---EEVNLMSSLLAKSYGIN-KTIA 100 (140)
T ss_dssp ECCSC---HHHHHHHHHHHHHTTCC-CEEE
T ss_pred EeeCC---chHHHHHHHHHHHcCCC-EEEE
Confidence 65211 11234455666777775 4443
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.57 E-value=0.74 Score=41.73 Aligned_cols=91 Identities=16% Similarity=0.064 Sum_probs=58.1
Q ss_pred CCCEEEEeC-Cc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-CCCCCCcccEEEecc
Q 016981 158 RPKNVVDVG-CG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPFPDGQFDLVWSME 234 (379)
Q Consensus 158 ~~~~vLDiG-cG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~V~~~~ 234 (379)
++.+||=+| +| .|..+..+++..|++|++++ ++...+.+++ .|.. .++..+-.+ ..-.-..+|+|+-.-
T Consensus 152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~~g~D~v~d~~ 223 (321)
T 3tqh_A 152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKA----LGAE---QCINYHEEDFLLAISTPVDAVIDLV 223 (321)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHH----HTCS---EEEETTTSCHHHHCCSCEEEEEESS
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHH----cCCC---EEEeCCCcchhhhhccCCCEEEECC
Confidence 389999996 44 68889999988899999998 4554555554 3431 122111111 100114689987532
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 235 SGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
. ...+..+.++|++||+++...
T Consensus 224 g-------~~~~~~~~~~l~~~G~iv~~g 245 (321)
T 3tqh_A 224 G-------GDVGIQSIDCLKETGCIVSVP 245 (321)
T ss_dssp C-------HHHHHHHGGGEEEEEEEEECC
T ss_pred C-------cHHHHHHHHhccCCCEEEEeC
Confidence 1 233488899999999998754
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.51 E-value=0.62 Score=42.68 Aligned_cols=93 Identities=18% Similarity=0.177 Sum_probs=62.3
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--------CCCCcc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~f 227 (379)
++.+||=.|+|. |.++..+++..|+ .++++|.++.-++.+++ .|. ...+ |..+.. .....+
T Consensus 160 ~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa---~~~i--~~~~~~~~~~~~~~~~~~g~ 230 (346)
T 4a2c_A 160 ENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGA---MQTF--NSSEMSAPQMQSVLRELRFN 230 (346)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC---SEEE--ETTTSCHHHHHHHHGGGCSS
T ss_pred CCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCC---eEEE--eCCCCCHHHHHHhhcccCCc
Confidence 489999999875 5677778887765 57899999998888766 332 1222 222211 112457
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
|+|+-.-. ....++.+.++|++||++++....
T Consensus 231 d~v~d~~G------~~~~~~~~~~~l~~~G~~v~~g~~ 262 (346)
T 4a2c_A 231 QLILETAG------VPQTVELAVEIAGPHAQLALVGTL 262 (346)
T ss_dssp EEEEECSC------SHHHHHHHHHHCCTTCEEEECCCC
T ss_pred cccccccc------ccchhhhhhheecCCeEEEEEecc
Confidence 87764321 156788899999999999987643
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=92.48 E-value=0.32 Score=44.78 Aligned_cols=89 Identities=16% Similarity=0.159 Sum_probs=61.8
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC------CCCCcccE
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~fD~ 229 (379)
++.+||-+|+ |.|..+..+++..|++|+++ .++..++.+++. |. ..+. +-.+.. .....+|+
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~l----Ga----~~i~-~~~~~~~~~~~~~~~~g~D~ 219 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDL----GA----TPID-ASREPEDYAAEHTAGQGFDL 219 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHH----TS----EEEE-TTSCHHHHHHHHHTTSCEEE
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHc----CC----CEec-cCCCHHHHHHHHhcCCCceE
Confidence 4899999994 46888888888779999999 888887777652 32 2222 211110 12346999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|+-.-. ...+..+.+.|++||++++..
T Consensus 220 vid~~g-------~~~~~~~~~~l~~~G~iv~~g 246 (343)
T 3gaz_A 220 VYDTLG-------GPVLDASFSAVKRFGHVVSCL 246 (343)
T ss_dssp EEESSC-------THHHHHHHHHEEEEEEEEESC
T ss_pred EEECCC-------cHHHHHHHHHHhcCCeEEEEc
Confidence 885422 146888899999999998765
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=92.36 E-value=0.4 Score=43.76 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=40.4
Q ss_pred CCeEEEEccCCC-CC-CCCCcccEEEeccccCCC--------------CCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 208 DKVSFQVGDALQ-QP-FPDGQFDLVWSMESGEHM--------------PDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 208 ~~i~~~~~d~~~-~~-~~~~~fD~V~~~~~l~~~--------------~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.+..++++|..+ +. +++++||+|++.=-.... ......+.+++++|||||.+++..
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~ 84 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF 84 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEE
Confidence 357788888765 32 567899999986333211 124678899999999999998864
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=92.29 E-value=0.22 Score=45.59 Aligned_cols=98 Identities=14% Similarity=0.112 Sum_probs=64.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-C-CEE-EEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC---CCCCcccEEEe
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-G-AKC-QGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~-~~v-~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V~~ 232 (379)
..+++|+-||.|.++..+.+.. + ..| .++|+++.+.+..+.++. .. +..+|+.++. ++...+|+++.
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~------~~-~~~~DI~~~~~~~i~~~~~Dil~g 82 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFK------EE-VQVKNLDSISIKQIESLNCNTWFM 82 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHC------CC-CBCCCTTTCCHHHHHHTCCCEEEE
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCC------CC-cccCChhhcCHHHhccCCCCEEEe
Confidence 5799999999999999888763 1 346 699999999998888762 12 5677887763 22236899986
Q ss_pred ccccCC-----------CCCH-HHHHHHHHH-hcCC---CCEEEEEe
Q 016981 233 MESGEH-----------MPDK-SKFVSELAR-VTAP---AGTIIIVT 263 (379)
Q Consensus 233 ~~~l~~-----------~~~~-~~~l~~~~r-~Lkp---gG~l~i~~ 263 (379)
..--.. ..|. ..++.++.+ +++. .-.+++.+
T Consensus 83 gpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lE 129 (327)
T 3qv2_A 83 SPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIE 129 (327)
T ss_dssp CCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEE
T ss_pred cCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEE
Confidence 533222 2343 356666666 5532 13455555
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=92.18 E-value=1.2 Score=40.48 Aligned_cols=79 Identities=15% Similarity=0.068 Sum_probs=55.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 225 (379)
+++||=.|++.|. +..+++.+ |.+|++++.++..++.+.+.+...+...++.++.+|+.+.. + ..+
T Consensus 8 ~k~vlVTGas~gI-G~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 86 (319)
T 3ioy_A 8 GRTAFVTGGANGV-GIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFG 86 (319)
T ss_dssp TCEEEEETTTSTH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEcCCchHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence 6789988877654 44444433 88999999999988887777766553347889999987742 0 014
Q ss_pred cccEEEeccccCC
Q 016981 226 QFDLVWSMESGEH 238 (379)
Q Consensus 226 ~fD~V~~~~~l~~ 238 (379)
..|+++.+-.+..
T Consensus 87 ~id~lv~nAg~~~ 99 (319)
T 3ioy_A 87 PVSILCNNAGVNL 99 (319)
T ss_dssp CEEEEEECCCCCC
T ss_pred CCCEEEECCCcCC
Confidence 6899998776543
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=91.96 E-value=0.12 Score=47.20 Aligned_cols=94 Identities=18% Similarity=0.175 Sum_probs=62.3
Q ss_pred CC-EEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC--CCC-CCCCCcccEEEe
Q 016981 159 PK-NVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA--LQQ-PFPDGQFDLVWS 232 (379)
Q Consensus 159 ~~-~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~--~~~-~~~~~~fD~V~~ 232 (379)
+. +||-+|+ |.|..+..+++..|++|++++.++..++.+++ .|. ..+ +-..+. ... ....+.+|+|+-
T Consensus 150 g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~----lGa-~~v-~~~~~~~~~~~~~~~~~~~d~vid 223 (330)
T 1tt7_A 150 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQ----LGA-SEV-ISREDVYDGTLKALSKQQWQGAVD 223 (330)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHH----HTC-SEE-EEHHHHCSSCCCSSCCCCEEEEEE
T ss_pred CCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC-cEE-EECCCchHHHHHHhhcCCccEEEE
Confidence 54 8999997 56778888888778899999999877777765 232 111 111111 111 122346899875
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
.-. . ..+....+.|++||++++....
T Consensus 224 ~~g-----~--~~~~~~~~~l~~~G~iv~~G~~ 249 (330)
T 1tt7_A 224 PVG-----G--KQLASLLSKIQYGGSVAVSGLT 249 (330)
T ss_dssp SCC-----T--HHHHHHHTTEEEEEEEEECCCS
T ss_pred CCc-----H--HHHHHHHHhhcCCCEEEEEecC
Confidence 422 2 3688899999999999887643
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=91.87 E-value=2.2 Score=37.46 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=51.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
.++||=.|+ |.++..+++.+ |.+|++++-++........ .+++++.+|+.++. -..+|+|+....
T Consensus 5 ~~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--------~~~~~~~~D~~d~~--~~~~d~vi~~a~ 72 (286)
T 3ius_A 5 TGTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA--------SGAEPLLWPGEEPS--LDGVTHLLISTA 72 (286)
T ss_dssp CCEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH--------TTEEEEESSSSCCC--CTTCCEEEECCC
T ss_pred cCcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh--------CCCeEEEecccccc--cCCCCEEEECCC
Confidence 468999994 88888887766 7899999998765443322 36899999998865 456899987665
Q ss_pred cCCCCC
Q 016981 236 GEHMPD 241 (379)
Q Consensus 236 l~~~~~ 241 (379)
.....+
T Consensus 73 ~~~~~~ 78 (286)
T 3ius_A 73 PDSGGD 78 (286)
T ss_dssp CBTTBC
T ss_pred cccccc
Confidence 544333
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.81 E-value=3 Score=36.62 Aligned_cols=78 Identities=15% Similarity=0.172 Sum_probs=53.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CC-----CC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~~ 225 (379)
+++||=.|++ |.++..+++.+ |.+|++++.++..++...+.+...+.+.++.++.+|+.+.. +. .+
T Consensus 32 ~k~vlVTGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 110 (279)
T 1xg5_A 32 DRLALVTGAS-GGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS 110 (279)
T ss_dssp TCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 6778888755 45555555444 78999999998877776666666554456888899987642 10 13
Q ss_pred cccEEEeccccC
Q 016981 226 QFDLVWSMESGE 237 (379)
Q Consensus 226 ~fD~V~~~~~l~ 237 (379)
.+|+|+.+-...
T Consensus 111 ~iD~vi~~Ag~~ 122 (279)
T 1xg5_A 111 GVDICINNAGLA 122 (279)
T ss_dssp CCSEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 689998776543
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=91.71 E-value=0.72 Score=43.70 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=37.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHH
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF------GAKCQGITLSPVQAQRANALAAA 203 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~------~~~v~gvD~s~~~~~~a~~~~~~ 203 (379)
..+|+|+|.|+|.++..+.+.. ..+++.||+|+...+.-++++..
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 188 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA 188 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence 4699999999999988887644 24799999999988887777764
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=91.64 E-value=0.23 Score=45.65 Aligned_cols=69 Identities=10% Similarity=0.100 Sum_probs=51.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC---CCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-G-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V~~~ 233 (379)
..+++|+-||.|.+...+.... + ..|.++|+++.+.+.-+.++. ...+...|+.++. ++...+|+++..
T Consensus 3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~------~~~~~~~DI~~~~~~~~~~~~~D~l~gg 76 (333)
T 4h0n_A 3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP------ETNLLNRNIQQLTPQVIKKWNVDTILMS 76 (333)
T ss_dssp CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECCCGGGCCHHHHHHTTCCEEEEC
T ss_pred CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC------CCceeccccccCCHHHhccCCCCEEEec
Confidence 4589999999999999888763 1 357899999999888777652 3446678887763 223368999854
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=91.59 E-value=0.72 Score=44.04 Aligned_cols=97 Identities=15% Similarity=0.084 Sum_probs=63.8
Q ss_pred CCCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC---------------
Q 016981 157 KRPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--------------- 219 (379)
Q Consensus 157 ~~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--------------- 219 (379)
.++.+||=.|+ |.|..+..+++..|++|++++.++..++.+++ .|...-+.....|..+
T Consensus 219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 294 (447)
T 4a0s_A 219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRA----LGCDLVINRAELGITDDIADDPRRVVETGRK 294 (447)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCCCEEEHHHHTCCTTGGGCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCCEEEecccccccccccccccccchhhhH
Confidence 35899999996 45778888888779999999999988887754 3321111111111100
Q ss_pred ----C-CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 220 ----Q-PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 220 ----~-~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+ ......+|+|+-.-. ...+....++|++||++++...
T Consensus 295 ~~~~v~~~~g~g~Dvvid~~G-------~~~~~~~~~~l~~~G~iv~~G~ 337 (447)
T 4a0s_A 295 LAKLVVEKAGREPDIVFEHTG-------RVTFGLSVIVARRGGTVVTCGS 337 (447)
T ss_dssp HHHHHHHHHSSCCSEEEECSC-------HHHHHHHHHHSCTTCEEEESCC
T ss_pred HHHHHHHHhCCCceEEEECCC-------chHHHHHHHHHhcCCEEEEEec
Confidence 0 001246899986432 2467888899999999988653
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=91.40 E-value=0.16 Score=47.21 Aligned_cols=102 Identities=17% Similarity=0.169 Sum_probs=59.2
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
++.+||=+|+|. |..+..++...|++|+++|.++..++.+++.... .+.....+..++.-.-..+|+|+..-..
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~DvVI~~~~~ 240 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAVAEADLLIGAVLV 240 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCc-----eeEeeeCCHHHHHHHHcCCCEEEECCCc
Confidence 358999999863 4555556665688999999999888877665422 2222211111110001258999865433
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.....+.-+.++..+.++|||.++....
T Consensus 241 ~~~~~~~li~~~~~~~~~~g~~ivdv~~ 268 (361)
T 1pjc_A 241 PGRRAPILVPASLVEQMRTGSVIVDVAV 268 (361)
T ss_dssp TTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred CCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence 2211111123456678999998766543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.22 E-value=1.1 Score=41.88 Aligned_cols=97 Identities=18% Similarity=0.095 Sum_probs=67.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+||.++.+.|.++..++.. .++.+.-|-......+.+++.+++++ ++.+...- .. ..+.||+|+.... .
T Consensus 39 ~~~~~~~~d~~gal~~~~~~~---~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~---~~~~~~~v~~~lp-k 110 (375)
T 4dcm_A 39 RGPVLILNDAFGALSCALAEH---KPYSIGDSYISELATRENLRLNGIDESSVKFLDST-AD---YPQQPGVVLIKVP-K 110 (375)
T ss_dssp CSCEEEECCSSSHHHHHTGGG---CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEETT-SC---CCSSCSEEEEECC-S
T ss_pred CCCEEEECCCCCHHHHhhccC---CceEEEhHHHHHHHHHHHHHHcCCCccceEecccc-cc---cccCCCEEEEEcC-C
Confidence 568999999999999888753 34555446666677888888888754 36654321 22 2467999886322 2
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.......|..+...|+||+.+++..
T Consensus 111 ~~~~l~~~L~~l~~~l~~~~~i~~~g 136 (375)
T 4dcm_A 111 TLALLEQQLRALRKVVTSDTRIIAGA 136 (375)
T ss_dssp CHHHHHHHHHHHHTTCCTTSEEEEEE
T ss_pred CHHHHHHHHHHHHhhCCCCCEEEEEe
Confidence 33334667888899999999998776
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.06 E-value=0.16 Score=47.37 Aligned_cols=92 Identities=14% Similarity=0.119 Sum_probs=59.3
Q ss_pred CCCCEEEEeC--CcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC-----CCCcccE
Q 016981 157 KRPKNVVDVG--CGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-----PDGQFDL 229 (379)
Q Consensus 157 ~~~~~vLDiG--cGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~~~~fD~ 229 (379)
.++.+||=+| .|.|..+..+++..|++|++++ ++...+.+++ .|. . .++ |..+..+ ....+|+
T Consensus 182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~----lGa--~-~v~--~~~~~~~~~~~~~~~g~D~ 251 (375)
T 2vn8_A 182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRK----LGA--D-DVI--DYKSGSVEEQLKSLKPFDF 251 (375)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHH----TTC--S-EEE--ETTSSCHHHHHHTSCCBSE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHH----cCC--C-EEE--ECCchHHHHHHhhcCCCCE
Confidence 3589999998 3468888888887788999998 6665555543 342 1 112 2221110 1146899
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|+-.-. .....+....+.|++||++++..
T Consensus 252 vid~~g-----~~~~~~~~~~~~l~~~G~iv~~g 280 (375)
T 2vn8_A 252 ILDNVG-----GSTETWAPDFLKKWSGATYVTLV 280 (375)
T ss_dssp EEESSC-----TTHHHHGGGGBCSSSCCEEEESC
T ss_pred EEECCC-----ChhhhhHHHHHhhcCCcEEEEeC
Confidence 875422 22245677788999999988765
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=90.83 E-value=0.16 Score=47.50 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=57.4
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
++.+|+=+|+|. |..+..++..+|.+|+++|.++..++.+++.+ +. .+.....+..++.-.-...|+|+..-..
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~---g~--~~~~~~~~~~~l~~~l~~aDvVi~~~~~ 241 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEF---CG--RIHTRYSSAYELEGAVKRADLVIGAVLV 241 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---TT--SSEEEECCHHHHHHHHHHCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhc---CC--eeEeccCCHHHHHHHHcCCCEEEECCCc
Confidence 578999999863 44444555555889999999998877766533 21 2211111111110001357999864322
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.....+.-+.++..+.+||||.++...
T Consensus 242 p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 242 PGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp TTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred CCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 211111112456678899999877654
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=90.77 E-value=2.3 Score=40.22 Aligned_cols=90 Identities=16% Similarity=0.157 Sum_probs=60.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----CCCCcccEEE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVW 231 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~ 231 (379)
..+|+=+|+| .++..+++.+ |..|+++|.++..++.+++ . .+.++.+|+.+.. ..-...|+|+
T Consensus 4 ~~~viIiG~G--r~G~~va~~L~~~g~~vvvId~d~~~v~~~~~----~----g~~vi~GDat~~~~L~~agi~~A~~vi 73 (413)
T 3l9w_A 4 GMRVIIAGFG--RFGQITGRLLLSSGVKMVVLDHDPDHIETLRK----F----GMKVFYGDATRMDLLESAGAAKAEVLI 73 (413)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH----T----TCCCEESCTTCHHHHHHTTTTTCSEEE
T ss_pred CCeEEEECCC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh----C----CCeEEEcCCCCHHHHHhcCCCccCEEE
Confidence 5678888885 4554444433 7899999999999888764 2 3557889987742 2235688887
Q ss_pred eccccCCCCCH--HHHHHHHHHhcCCCCEEEEEe
Q 016981 232 SMESGEHMPDK--SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 232 ~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.. ++. ...+....+.+.|+..++.-.
T Consensus 74 v~~-----~~~~~n~~i~~~ar~~~p~~~Iiara 102 (413)
T 3l9w_A 74 NAI-----DDPQTNLQLTEMVKEHFPHLQIIARA 102 (413)
T ss_dssp ECC-----SSHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred ECC-----CChHHHHHHHHHHHHhCCCCeEEEEE
Confidence 642 333 344566677888988777654
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=90.73 E-value=0.24 Score=46.11 Aligned_cols=94 Identities=12% Similarity=0.058 Sum_probs=61.6
Q ss_pred CCCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-----CCCCCcccE
Q 016981 157 KRPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDL 229 (379)
Q Consensus 157 ~~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~fD~ 229 (379)
.++.+||=+|+ |.|..+..+++..|++|+++. ++.-++.+++ .|. -.++...-.+. ...++.+|+
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~----lGa---~~vi~~~~~~~~~~v~~~t~g~~d~ 234 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKS----RGA---EEVFDYRAPNLAQTIRTYTKNNLRY 234 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHH----TTC---SEEEETTSTTHHHHHHHHTTTCCCE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHH----cCC---cEEEECCCchHHHHHHHHccCCccE
Confidence 35899999998 378899999998899999985 7777666654 342 11222111111 012345999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhc-CCCCEEEEEec
Q 016981 230 VWSMESGEHMPDKSKFVSELARVT-APAGTIIIVTW 264 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~L-kpgG~l~i~~~ 264 (379)
|+-.-. . ...+..+.+.| ++||++++...
T Consensus 235 v~d~~g-----~-~~~~~~~~~~l~~~~G~iv~~g~ 264 (371)
T 3gqv_A 235 ALDCIT-----N-VESTTFCFAAIGRAGGHYVSLNP 264 (371)
T ss_dssp EEESSC-----S-HHHHHHHHHHSCTTCEEEEESSC
T ss_pred EEECCC-----c-hHHHHHHHHHhhcCCCEEEEEec
Confidence 874321 1 45678888889 69999988653
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.62 E-value=0.54 Score=42.32 Aligned_cols=69 Identities=20% Similarity=0.162 Sum_probs=51.9
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCE---EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC---CC-CCcccEE
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAK---CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FP-DGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~-~~~fD~V 230 (379)
...+++|+=||.|.++..+.+. |.+ |.++|+++.+.+.-+.++ +...+..+|+.++. ++ .+.+|++
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~------~~~~~~~~DI~~i~~~~i~~~~~~Dll 87 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRH------QGKIMYVGDVRSVTQKHIQEWGPFDLV 87 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHT------TTCEEEECCGGGCCHHHHHHTCCCSEE
T ss_pred CCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhC------CCCceeCCChHHccHHHhcccCCcCEE
Confidence 4679999999999999888876 433 589999999888766654 24567788988763 11 1468999
Q ss_pred Eec
Q 016981 231 WSM 233 (379)
Q Consensus 231 ~~~ 233 (379)
+..
T Consensus 88 ~gg 90 (295)
T 2qrv_A 88 IGG 90 (295)
T ss_dssp EEC
T ss_pred Eec
Confidence 864
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=90.45 E-value=3.1 Score=36.46 Aligned_cols=103 Identities=22% Similarity=0.176 Sum_probs=66.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeC-CHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITL-SPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PD 224 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~-s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~ 224 (379)
++++|=.|++.|. +..+++.+ |.+|+.++. +....+...+.+...+ .++.++.+|+.+.. + .-
T Consensus 18 ~k~~lVTGas~gI-G~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 94 (270)
T 3is3_A 18 GKVALVTGSGRGI-GAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVAHF 94 (270)
T ss_dssp TCEEEESCTTSHH-HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCchH-HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 6788888876554 44444433 889998775 4555666666565544 47889999987742 1 01
Q ss_pred CcccEEEeccccCCCCC-----H--------------HHHHHHHHHhcCCCCEEEEEec
Q 016981 225 GQFDLVWSMESGEHMPD-----K--------------SKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 225 ~~fD~V~~~~~l~~~~~-----~--------------~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+..|+++.+-....... . ..+.+.+.+.++.+|++++..-
T Consensus 95 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 95 GHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp SCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 46899997765544321 1 1345667778888998887654
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.45 E-value=1.9 Score=37.70 Aligned_cols=104 Identities=19% Similarity=0.154 Sum_probs=62.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CC-----CC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~~ 225 (379)
+++||=.|++.| ++..+++.+ |.+|+.++.++...+.+.+.+.......++.++.+|+.+.. +. -+
T Consensus 7 ~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 85 (267)
T 2gdz_A 7 GKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG 85 (267)
T ss_dssp TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCCc-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 668888886544 444444443 88999999998766655444432111236888899987632 10 13
Q ss_pred cccEEEeccccCCCCCHHHH-----------HHHHHHhcCC-----CCEEEEEe
Q 016981 226 QFDLVWSMESGEHMPDKSKF-----------VSELARVTAP-----AGTIIIVT 263 (379)
Q Consensus 226 ~fD~V~~~~~l~~~~~~~~~-----------l~~~~r~Lkp-----gG~l~i~~ 263 (379)
..|+++.+-......++... .+.+.+.++. +|+++...
T Consensus 86 ~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~is 139 (267)
T 2gdz_A 86 RLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMS 139 (267)
T ss_dssp CCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEEC
T ss_pred CCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeC
Confidence 58999987765544454332 2344455543 57776654
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.38 E-value=2.1 Score=37.73 Aligned_cols=102 Identities=19% Similarity=0.119 Sum_probs=67.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCC------------HHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS------------PVQAQRANALAAARGLADKVSFQVGDALQQP-- 221 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s------------~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-- 221 (379)
+++||=.|++.|. +..+++.+ |.+|+.+|.+ ...++.+...+...+ .++.++.+|+.+..
T Consensus 10 gk~vlVTGas~gI-G~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v 86 (287)
T 3pxx_A 10 DKVVLVTGGARGQ-GRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRAAV 86 (287)
T ss_dssp TCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHHH
T ss_pred CCEEEEeCCCChH-HHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHHHH
Confidence 6788888876654 44444433 8899999987 666666666665544 47899999987742
Q ss_pred ---CC-----CCcccEEEeccccCCCC------CH-----------HHHHHHHHHhcCCCCEEEEEe
Q 016981 222 ---FP-----DGQFDLVWSMESGEHMP------DK-----------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 222 ---~~-----~~~fD~V~~~~~l~~~~------~~-----------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+. -+..|+++.+-.+.... ++ ..+++.+...++.+|.++...
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 153 (287)
T 3pxx_A 87 SRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG 153 (287)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence 10 14689999876554321 11 124556667778889887764
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=90.37 E-value=1.2 Score=36.56 Aligned_cols=91 Identities=21% Similarity=0.235 Sum_probs=54.1
Q ss_pred CCEEEEeCCcc-cHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----C-CCCcccEEE
Q 016981 159 PKNVVDVGCGI-GGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----F-PDGQFDLVW 231 (379)
Q Consensus 159 ~~~vLDiGcGt-G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~-~~~~fD~V~ 231 (379)
+.+|+=+|+|. |......+... |..|+++|.++..++.+++ . .+.+..+|..+.. . .-..+|+|+
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~----g~~~~~gd~~~~~~l~~~~~~~~ad~vi 110 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRS----E----GRNVISGDATDPDFWERILDTGHVKLVL 110 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----T----TCCEEECCTTCHHHHHTBCSCCCCCEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----C----CCCEEEcCCCCHHHHHhccCCCCCCEEE
Confidence 56899998863 33322222333 6789999999987766543 2 3455667765421 1 234689888
Q ss_pred eccccCCCCCH--HHHHHHHHHhcCCCCEEEEE
Q 016981 232 SMESGEHMPDK--SKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 232 ~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~ 262 (379)
..- ++. ...+-...+.+.|++.++..
T Consensus 111 ~~~-----~~~~~~~~~~~~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 111 LAM-----PHHQGNQTALEQLQRRNYKGQIAAI 138 (183)
T ss_dssp ECC-----SSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EeC-----CChHHHHHHHHHHHHHCCCCEEEEE
Confidence 632 222 22333456667777777664
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=90.33 E-value=1.3 Score=38.60 Aligned_cols=99 Identities=15% Similarity=0.143 Sum_probs=64.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-C---------CCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-F---------PDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~---------~~~ 225 (379)
++++|=.|++.|. +..+++.+ |++|+.+|.++..++...+.+ ..++.++.+|+.+.. . .-+
T Consensus 8 gk~~lVTGas~gI-G~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (255)
T 4eso_A 8 GKKAIVIGGTHGM-GLATVRRLVEGGAEVLLTGRNESNIARIREEF-----GPRVHALRSDIADLNEIAVLGAAAGQTLG 81 (255)
T ss_dssp TCEEEEETCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHHHHhC
Confidence 6788888876654 44444433 889999999988777665544 146889999987742 0 014
Q ss_pred cccEEEeccccCCCC-----CH--------------HHHHHHHHHhcCCCCEEEEEe
Q 016981 226 QFDLVWSMESGEHMP-----DK--------------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 226 ~fD~V~~~~~l~~~~-----~~--------------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
..|+++.+-...... +. ..+.+.+...++.+|.++...
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 82 AIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp SEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 689998776554321 11 124455666777788877765
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=90.09 E-value=1.8 Score=38.03 Aligned_cols=78 Identities=13% Similarity=0.008 Sum_probs=56.8
Q ss_pred CCEEEEeCCcccH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----------CCCC
Q 016981 159 PKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~ 225 (379)
++.+|=-|.+.|. .+..|++. |++|+.+|.+++.++.+.+.+...+ .++.++.+|+.+.. -.-+
T Consensus 9 gKvalVTGas~GIG~aia~~la~~-Ga~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 85 (255)
T 4g81_D 9 GKTALVTGSARGLGFAYAEGLAAA-GARVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDAEGI 85 (255)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHT-TCEEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence 7788888877664 23444443 8999999999999888887777765 47888899987632 1236
Q ss_pred cccEEEeccccCCC
Q 016981 226 QFDLVWSMESGEHM 239 (379)
Q Consensus 226 ~fD~V~~~~~l~~~ 239 (379)
..|+++.+-.+.+.
T Consensus 86 ~iDiLVNNAG~~~~ 99 (255)
T 4g81_D 86 HVDILINNAGIQYR 99 (255)
T ss_dssp CCCEEEECCCCCCC
T ss_pred CCcEEEECCCCCCC
Confidence 79999987666543
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.87 E-value=1.6 Score=38.04 Aligned_cols=104 Identities=13% Similarity=0.026 Sum_probs=64.9
Q ss_pred CCCCEEEEeCCc-ccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----
Q 016981 157 KRPKNVVDVGCG-IGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F----- 222 (379)
Q Consensus 157 ~~~~~vLDiGcG-tG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~----- 222 (379)
.++++||=.|++ +|.++..+++.+ |.+|+.++.+....+.+++..+..+ ++.++.+|+.+.. +
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~ 88 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG---SELVFPCDVADDAQIDALFASLKT 88 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHHHH
Confidence 357899999975 244454544443 8899999988655555555444432 4788899987742 0
Q ss_pred CCCcccEEEeccccCCC----------CCH--------------HHHHHHHHHhcCCCCEEEEEe
Q 016981 223 PDGQFDLVWSMESGEHM----------PDK--------------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 223 ~~~~fD~V~~~~~l~~~----------~~~--------------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.-+..|+++.+-.+... .+. ..+++.+.+.++++|.++...
T Consensus 89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 153 (271)
T 3ek2_A 89 HWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS 153 (271)
T ss_dssp HCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred HcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence 11478999987655331 111 124455666777788877765
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=89.86 E-value=2.6 Score=37.50 Aligned_cols=101 Identities=16% Similarity=0.146 Sum_probs=65.6
Q ss_pred CCEEEEeCCccc--H---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----C
Q 016981 159 PKNVVDVGCGIG--G---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----P 223 (379)
Q Consensus 159 ~~~vLDiGcGtG--~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~ 223 (379)
++++|=.|++.| . ++..|++. |++|+.++.++...+.+++.....+ ++.++.+|+.+.. + .
T Consensus 31 gk~~lVTGasg~~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (293)
T 3grk_A 31 GKRGLILGVANNRSIAWGIAKAAREA-GAELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFETLEKK 106 (293)
T ss_dssp TCEEEEECCCSSSSHHHHHHHHHHHT-TCEEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHHHHh
Confidence 778999997643 2 34444544 8899999999766565555544433 5888999987742 1 1
Q ss_pred CCcccEEEeccccCC-------C--CCH--------------HHHHHHHHHhcCCCCEEEEEe
Q 016981 224 DGQFDLVWSMESGEH-------M--PDK--------------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 224 ~~~fD~V~~~~~l~~-------~--~~~--------------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
-+..|+++.+-.+.. + .+. ..+++.+.+.++.+|+++...
T Consensus 107 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is 169 (293)
T 3grk_A 107 WGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT 169 (293)
T ss_dssp TSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred cCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 247899998765543 1 111 134556677788888887765
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.79 E-value=3.4 Score=36.63 Aligned_cols=77 Identities=14% Similarity=0.122 Sum_probs=54.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C----C------CC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P----F------PD 224 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~----~------~~ 224 (379)
+++||=.|++.| ++..+++.+ |.+|+.++-+....+.+.+.+...+ ..++.++.+|+.+. . + ..
T Consensus 12 ~k~vlITGas~G-IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~ 89 (311)
T 3o26_A 12 RRCAVVTGGNKG-IGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSN-HENVVFHQLDVTDPIATMSSLADFIKTHF 89 (311)
T ss_dssp CCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-CCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence 677887787655 444444433 8899999999988877777666543 24799999998775 2 0 01
Q ss_pred CcccEEEeccccC
Q 016981 225 GQFDLVWSMESGE 237 (379)
Q Consensus 225 ~~fD~V~~~~~l~ 237 (379)
+..|+++.+-.+.
T Consensus 90 g~iD~lv~nAg~~ 102 (311)
T 3o26_A 90 GKLDILVNNAGVA 102 (311)
T ss_dssp SSCCEEEECCCCC
T ss_pred CCCCEEEECCccc
Confidence 4789999876654
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=89.43 E-value=1.1 Score=41.17 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=53.8
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEe-CCHH---HHHHHHHHHHHcCCCCCeEEEEc------cCCCCCCCCC
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGIT-LSPV---QAQRANALAAARGLADKVSFQVG------DALQQPFPDG 225 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD-~s~~---~~~~a~~~~~~~~~~~~i~~~~~------d~~~~~~~~~ 225 (379)
++.+||=+|+ |.|..+..+++..|++++++. .++. ..+.++ ..|. + .++.. ++.+..-..+
T Consensus 167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~----~lGa-~--~vi~~~~~~~~~~~~~~~~~~ 239 (357)
T 1zsy_A 167 PGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLK----SLGA-E--HVITEEELRRPEMKNFFKDMP 239 (357)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHH----HTTC-S--EEEEHHHHHSGGGGGTTSSSC
T ss_pred CCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHH----hcCC-c--EEEecCcchHHHHHHHHhCCC
Confidence 4899999996 568889999987788776654 4322 233333 3442 1 12221 1111111112
Q ss_pred cccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 226 QFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 226 ~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.+|+|+-.- .. . .+.+..++|+|||++++..
T Consensus 240 ~~Dvvid~~-----g~-~-~~~~~~~~l~~~G~iv~~G 270 (357)
T 1zsy_A 240 QPRLALNCV-----GG-K-SSTELLRQLARGGTMVTYG 270 (357)
T ss_dssp CCSEEEESS-----CH-H-HHHHHHTTSCTTCEEEECC
T ss_pred CceEEEECC-----Cc-H-HHHHHHHhhCCCCEEEEEe
Confidence 489887432 21 2 2346789999999998864
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=89.40 E-value=1.9 Score=37.55 Aligned_cols=103 Identities=16% Similarity=0.139 Sum_probs=66.3
Q ss_pred CCEEEEeCCc--ccH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CC-----
Q 016981 159 PKNVVDVGCG--IGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP----- 223 (379)
Q Consensus 159 ~~~vLDiGcG--tG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~----- 223 (379)
++++|=.|++ .|. ++..|+++ |.+|+.++.+....+.+.+.....+- .++.++.+|+.+.. +.
T Consensus 7 ~k~vlVTGasg~~GIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (266)
T 3oig_A 7 GRNIVVMGVANKRSIAWGIARSLHEA-GARLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASIKEQ 84 (266)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHC-CCEEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHHHHH
Confidence 6789999876 333 34445544 88999999887655655555544332 37899999998742 10
Q ss_pred CCcccEEEeccccCC-------C--CCH---H-----------HHHHHHHHhcCCCCEEEEEe
Q 016981 224 DGQFDLVWSMESGEH-------M--PDK---S-----------KFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 224 ~~~fD~V~~~~~l~~-------~--~~~---~-----------~~l~~~~r~LkpgG~l~i~~ 263 (379)
.+..|+++.+-.+.. + .+. . .+++.+...++++|.++...
T Consensus 85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 147 (266)
T 3oig_A 85 VGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT 147 (266)
T ss_dssp HSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred hCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 146899887765443 1 111 1 24556777788889887765
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=89.35 E-value=0.26 Score=46.02 Aligned_cols=101 Identities=16% Similarity=0.138 Sum_probs=55.4
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
++.+|+=+|+|. |..+..++...|++|+++|.++..++.+++.. +. .+.....+..++.-.-..+|+|+..-..
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~---g~--~~~~~~~~~~~l~~~~~~~DvVi~~~g~ 239 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF---GG--RVITLTATEANIKKSVQHADLLIGAVLV 239 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---TT--SEEEEECCHHHHHHHHHHCSEEEECCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc---Cc--eEEEecCCHHHHHHHHhCCCEEEECCCC
Confidence 468999999852 44444444445889999999998776665432 21 2222111111111001358999865433
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.....+.-+.++..+.+||||.++...
T Consensus 240 ~~~~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 240 PGAKAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp ------CCSCHHHHTTSCTTCEEEECC
T ss_pred CccccchhHHHHHHHhhcCCCEEEEEe
Confidence 211111112466778899999877654
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=89.34 E-value=3 Score=37.03 Aligned_cols=102 Identities=18% Similarity=0.153 Sum_probs=63.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHH-HHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPV-QAQRANALAAARGLADKVSFQVGDALQQP-----F-----PD 224 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~ 224 (379)
+++||=.|++.|. +..+++.+ |.+|+.++.+.. ..+.+.+.....+ .++.++.+|+.+.. + .-
T Consensus 47 gk~vlVTGas~GI-G~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 123 (291)
T 3ijr_A 47 GKNVLITGGDSGI-GRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVRQL 123 (291)
T ss_dssp TCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 7788988876553 44444433 889999998764 3444444444433 47889999987642 1 01
Q ss_pred CcccEEEeccccCCC-C-----CH--------------HHHHHHHHHhcCCCCEEEEEe
Q 016981 225 GQFDLVWSMESGEHM-P-----DK--------------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 225 ~~fD~V~~~~~l~~~-~-----~~--------------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+..|+++.+-..... . +. ..+++.+.+.++.+|+++...
T Consensus 124 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is 182 (291)
T 3ijr_A 124 GSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA 182 (291)
T ss_dssp SSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence 468999977544321 1 11 135566677788889877764
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=88.99 E-value=1.5 Score=42.42 Aligned_cols=88 Identities=18% Similarity=0.176 Sum_probs=56.4
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
++++|+=+|+|. |......++.+|.+|+++|.++...+.|++ .| ..+ .+..+. -...|+|+..-.-
T Consensus 273 ~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~----~G----a~~--~~l~e~---l~~aDvVi~atgt 339 (494)
T 3ce6_A 273 GGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMM----EG----FDV--VTVEEA---IGDADIVVTATGN 339 (494)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TT----CEE--CCHHHH---GGGCSEEEECSSS
T ss_pred CcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cC----CEE--ecHHHH---HhCCCEEEECCCC
Confidence 489999999874 544555555558899999999987766543 23 222 222221 1358999875333
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.++-+ .+..+.+||||+++...
T Consensus 340 ~~~i~-----~~~l~~mk~ggilvnvG 361 (494)
T 3ce6_A 340 KDIIM-----LEHIKAMKDHAILGNIG 361 (494)
T ss_dssp SCSBC-----HHHHHHSCTTCEEEECS
T ss_pred HHHHH-----HHHHHhcCCCcEEEEeC
Confidence 33211 25667799999987765
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.94 E-value=5.1 Score=35.13 Aligned_cols=102 Identities=18% Similarity=0.137 Sum_probs=65.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS-PVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PD 224 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s-~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~ 224 (379)
++++|=.|++.|. +..+++.+ |.+|+.++.. ....+...+.+...+ .++.++.+|+.+.. + .-
T Consensus 31 gk~~lVTGas~GI-G~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 107 (271)
T 3v2g_A 31 GKTAFVTGGSRGI-GAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRETVEAL 107 (271)
T ss_dssp TCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 7789988877654 44444333 8899988654 455555555555544 47889999987642 1 01
Q ss_pred CcccEEEeccccCCCC-----C---H-----------HHHHHHHHHhcCCCCEEEEEe
Q 016981 225 GQFDLVWSMESGEHMP-----D---K-----------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 225 ~~fD~V~~~~~l~~~~-----~---~-----------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+..|+++.+-.+.... + + ..+++.+.+.++.+|.++...
T Consensus 108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is 165 (271)
T 3v2g_A 108 GGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG 165 (271)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4689999876554321 1 1 135566777888889888765
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=88.87 E-value=4.5 Score=36.02 Aligned_cols=76 Identities=20% Similarity=0.190 Sum_probs=51.9
Q ss_pred CCEEEEeCCcccH---HHHHHHHHcCCEEEEEeCC------------HHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--
Q 016981 159 PKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLS------------PVQAQRANALAAARGLADKVSFQVGDALQQP-- 221 (379)
Q Consensus 159 ~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~s------------~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-- 221 (379)
++++|=.|++.|. ++..|++. |++|+.+|.+ +..++.+.+.+...+ .++.++.+|+.+..
T Consensus 28 gk~~lVTGas~GIG~aia~~la~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v 104 (299)
T 3t7c_A 28 GKVAFITGAARGQGRSHAITLARE-GADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG--RRIIASQVDVRDFDAM 104 (299)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEecccccccccccccCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHH
Confidence 6788888877664 33344443 8999999987 666666666665544 47899999997742
Q ss_pred ---C-----CCCcccEEEeccccC
Q 016981 222 ---F-----PDGQFDLVWSMESGE 237 (379)
Q Consensus 222 ---~-----~~~~fD~V~~~~~l~ 237 (379)
+ .-+..|+++.+-.+.
T Consensus 105 ~~~~~~~~~~~g~iD~lv~nAg~~ 128 (299)
T 3t7c_A 105 QAAVDDGVTQLGRLDIVLANAALA 128 (299)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHhCCCCEEEECCCCC
Confidence 1 114789998776543
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=88.68 E-value=3.3 Score=36.87 Aligned_cols=102 Identities=21% Similarity=0.238 Sum_probs=65.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCC--HHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----C
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS--PVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----P 223 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s--~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~ 223 (379)
++++|=.|++.| ++..+++.+ |.+|+.++.+ ....+...+.....+ .++.++.+|+.+.. + .
T Consensus 49 ~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 125 (294)
T 3r3s_A 49 DRKALVTGGDSG-IGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKAREA 125 (294)
T ss_dssp TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 678888887655 444444433 8899999886 344555555555544 47888899987642 1 0
Q ss_pred CCcccEEEeccccCCC-C-----CH--------------HHHHHHHHHhcCCCCEEEEEe
Q 016981 224 DGQFDLVWSMESGEHM-P-----DK--------------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 224 ~~~fD~V~~~~~l~~~-~-----~~--------------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
-+..|+++.+-..... . +. ..+++.+...++.+|.++...
T Consensus 126 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~is 185 (294)
T 3r3s_A 126 LGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTS 185 (294)
T ss_dssp HTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence 1478999987665331 1 11 134556677788889888765
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=88.52 E-value=0.24 Score=46.20 Aligned_cols=97 Identities=20% Similarity=0.267 Sum_probs=58.0
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC-------------------
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA------------------- 217 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~------------------- 217 (379)
++.+|+=+|+|. |..+..++..+|++|+++|.++..++.+++ .| ..+...+.
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~----lG----a~~~~l~~~~~~~~gya~~~~~~~~~~ 254 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRS----VG----AQWLDLGIDAAGEGGYARELSEAERAQ 254 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHH----TT----CEECCCC-------------CHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cC----CeEEeccccccccccchhhhhHHHHhh
Confidence 578999999984 555666666669999999999987776654 12 22322110
Q ss_pred --CCCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEE
Q 016981 218 --LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 218 --~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~ 262 (379)
..+.-.-...|+|+..-.+..-..+.-+-+++.+.+|||+.++-.
T Consensus 255 ~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDv 301 (381)
T 3p2y_A 255 QQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDL 301 (381)
T ss_dssp HHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEET
T ss_pred hHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEE
Confidence 000000146899986432211111122346788889999876543
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.92 E-value=0.79 Score=43.10 Aligned_cols=42 Identities=17% Similarity=0.367 Sum_probs=34.0
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANA 199 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~ 199 (379)
++.+|+=+|+|. |..+..++..+|++|+++|.++..++.+++
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~ 231 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVAS 231 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 478999999984 666666777679999999999987777655
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=87.82 E-value=0.85 Score=41.51 Aligned_cols=66 Identities=14% Similarity=0.053 Sum_probs=48.9
Q ss_pred CEEEEeCCcccHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC-CCCcccEEEec
Q 016981 160 KNVVDVGCGIGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSM 233 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~V~~~ 233 (379)
++|||+=||.|.++.-+.+. |.+ +.++|+++.+.+.-+.++ + -.+..+|+.++.. .-...|+++..
T Consensus 1 mkvidLFsG~GG~~~G~~~a-G~~~v~a~e~d~~a~~ty~~N~-----~--~~~~~~DI~~i~~~~~~~~D~l~gg 68 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDEFPKCDGIIGG 68 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT-TCEEEEEEECCTTTHHHHHHHC-----C--SEEEESCGGGCCGGGSCCCSEEECC
T ss_pred CeEEEeCcCccHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHC-----C--CCcccCChhhCCHhhCCcccEEEec
Confidence 47999999999999888776 544 668999998888777664 1 3567889887632 12358988853
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=87.58 E-value=5.1 Score=34.92 Aligned_cols=79 Identities=13% Similarity=-0.003 Sum_probs=53.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-CCCcccE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-PDGQFDL 229 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-~~~~fD~ 229 (379)
++++|=.|++.| ++..+++.+ |.+|+.+|.++..++.+.+.+...+....+.++.+|+.+.. + .-+..|+
T Consensus 10 ~k~~lVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 88 (267)
T 3t4x_A 10 GKTALVTGSTAG-IGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVDI 88 (267)
T ss_dssp TCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCSE
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCCE
Confidence 678888886654 444444443 88999999999888777666665543346778888987632 0 1246899
Q ss_pred EEeccccCC
Q 016981 230 VWSMESGEH 238 (379)
Q Consensus 230 V~~~~~l~~ 238 (379)
++.+-....
T Consensus 89 lv~nAg~~~ 97 (267)
T 3t4x_A 89 LINNLGIFE 97 (267)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCCC
Confidence 998765543
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=87.54 E-value=2.7 Score=36.43 Aligned_cols=102 Identities=16% Similarity=0.115 Sum_probs=63.8
Q ss_pred CCEEEEeCCcccHHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CC-----C
Q 016981 159 PKNVVDVGCGIGGSSRYLAKK----FGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~ 224 (379)
+++||=.|+ +|.++..+++. .|.+|++++-++...+...+.+...+ .++.++.+|+.+.. +. .
T Consensus 4 ~k~vlITGa-sggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (276)
T 1wma_A 4 IHVALVTGG-NKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKEY 80 (276)
T ss_dssp CCEEEESSC-SSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHhc
Confidence 667887775 45555444432 36899999999887776666665543 46889999987642 10 1
Q ss_pred CcccEEEeccccCCCC----C----H-----------HHHHHHHHHhcCCCCEEEEEe
Q 016981 225 GQFDLVWSMESGEHMP----D----K-----------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 225 ~~fD~V~~~~~l~~~~----~----~-----------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.+|+|+.+-...... . . ..+++.+.+.++++|++++..
T Consensus 81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s 138 (276)
T 1wma_A 81 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 138 (276)
T ss_dssp SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence 3689998765443211 1 1 124455666667778877764
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=87.31 E-value=3.8 Score=34.81 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=49.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCe-EEEEccCCC-CCCCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKV-SFQVGDALQ-QPFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i-~~~~~d~~~-~~~~~~~fD~V~~~ 233 (379)
+++||=.|+ +|.++..+++.+ |.+|++++-++..++.... .++ .++.+|+.+ +.-.-+..|+|+.+
T Consensus 21 ~~~ilVtGa-tG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~--------~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ 91 (236)
T 3e8x_A 21 GMRVLVVGA-NGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE--------RGASDIVVANLEEDFSHAFASIDAVVFA 91 (236)
T ss_dssp CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--------TTCSEEEECCTTSCCGGGGTTCSEEEEC
T ss_pred CCeEEEECC-CChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh--------CCCceEEEcccHHHHHHHHcCCCEEEEC
Confidence 788998875 555666655544 7899999998765544322 257 889999862 11112468999987
Q ss_pred cccCCCCCH
Q 016981 234 ESGEHMPDK 242 (379)
Q Consensus 234 ~~l~~~~~~ 242 (379)
.......++
T Consensus 92 ag~~~~~~~ 100 (236)
T 3e8x_A 92 AGSGPHTGA 100 (236)
T ss_dssp CCCCTTSCH
T ss_pred CCCCCCCCc
Confidence 665544443
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.19 E-value=4.8 Score=35.31 Aligned_cols=77 Identities=17% Similarity=0.196 Sum_probs=52.4
Q ss_pred CCEEEEeCCcccH---HHHHHHHHcCCEEEEEeC-------------CHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-
Q 016981 159 PKNVVDVGCGIGG---SSRYLAKKFGAKCQGITL-------------SPVQAQRANALAAARGLADKVSFQVGDALQQP- 221 (379)
Q Consensus 159 ~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~-------------s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 221 (379)
++++|=.|++.|. ++..|+++ |.+|+.+|. +...++...+.+...+ .++.++.+|+.+..
T Consensus 11 ~k~~lVTGas~GIG~a~a~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~ 87 (277)
T 3tsc_A 11 GRVAFITGAARGQGRAHAVRMAAE-GADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN--RRIVAAVVDTRDFDR 87 (277)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHH
T ss_pred CCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHH
Confidence 6788888876654 33344443 889999998 6777766666665544 47889999987742
Q ss_pred ----CC-----CCcccEEEeccccCC
Q 016981 222 ----FP-----DGQFDLVWSMESGEH 238 (379)
Q Consensus 222 ----~~-----~~~fD~V~~~~~l~~ 238 (379)
+. -+..|+++.+-.+..
T Consensus 88 v~~~~~~~~~~~g~id~lvnnAg~~~ 113 (277)
T 3tsc_A 88 LRKVVDDGVAALGRLDIIVANAGVAA 113 (277)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 11 146899998766544
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=87.15 E-value=0.6 Score=43.18 Aligned_cols=97 Identities=10% Similarity=0.071 Sum_probs=56.5
Q ss_pred CC-CEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc------cCCC-C-CC---C
Q 016981 158 RP-KNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG------DALQ-Q-PF---P 223 (379)
Q Consensus 158 ~~-~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~------d~~~-~-~~---~ 223 (379)
++ .+||=+|+ |.|..+..+++..|++++++.-++..+...++.++..|.. .++.. |+.+ + .. .
T Consensus 166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~~~~i~~~t~~~ 242 (364)
T 1gu7_A 166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT---QVITEDQNNSREFGPTIKEWIKQS 242 (364)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS---EEEEHHHHHCGGGHHHHHHHHHHH
T ss_pred CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCe---EEEecCccchHHHHHHHHHHhhcc
Confidence 47 89999986 4688888999877999988875544311111222233431 11211 1110 0 00 1
Q ss_pred CCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 224 DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 224 ~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.+.+|+|+-.-. . .... .+.++|++||++++...
T Consensus 243 ~~g~Dvvid~~G-----~-~~~~-~~~~~l~~~G~~v~~g~ 276 (364)
T 1gu7_A 243 GGEAKLALNCVG-----G-KSST-GIARKLNNNGLMLTYGG 276 (364)
T ss_dssp TCCEEEEEESSC-----H-HHHH-HHHHTSCTTCEEEECCC
T ss_pred CCCceEEEECCC-----c-hhHH-HHHHHhccCCEEEEecC
Confidence 246999985321 1 2233 67899999999988654
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=86.85 E-value=0.44 Score=44.67 Aligned_cols=42 Identities=21% Similarity=0.369 Sum_probs=32.4
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANA 199 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~ 199 (379)
++.+|+=+|+|. |..+..+++.+|++|+++|.++...+.+++
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~ 213 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVES 213 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 488999999984 555666677678899999999876665543
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=86.76 E-value=3.3 Score=36.43 Aligned_cols=76 Identities=16% Similarity=0.140 Sum_probs=52.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC---------CCCc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF---------PDGQ 226 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------~~~~ 226 (379)
++++|=.|++.| ++..+++.+ |++|+.+|.++..++.+.+.+...+ .++.++.+|+.+..- ..+.
T Consensus 33 gk~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~g~ 109 (275)
T 4imr_A 33 GRTALVTGSSRG-IGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASG--GTAQELAGDLSEAGAGTDLIERAEAIAP 109 (275)
T ss_dssp TCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTT--CCEEEEECCTTSTTHHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 678888886655 444444433 8899999998877777666665544 478899999877530 0147
Q ss_pred ccEEEeccccC
Q 016981 227 FDLVWSMESGE 237 (379)
Q Consensus 227 fD~V~~~~~l~ 237 (379)
.|+++.+-...
T Consensus 110 iD~lvnnAg~~ 120 (275)
T 4imr_A 110 VDILVINASAQ 120 (275)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 89999876653
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=86.60 E-value=2.1 Score=38.22 Aligned_cols=102 Identities=19% Similarity=0.165 Sum_probs=64.4
Q ss_pred CCCEEEEeCCcc--cH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CC----
Q 016981 158 RPKNVVDVGCGI--GG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP---- 223 (379)
Q Consensus 158 ~~~~vLDiGcGt--G~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~---- 223 (379)
.++++|=.|++. |. ++..|++. |++|+.+|.++...+.+.+.....+ ++.++.+|+.+.. +.
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~ 104 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQ-GAEVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSDAESVDNMFKVLAE 104 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHHH
Confidence 367899998754 32 34444444 8899999998765555555544433 4678899987742 10
Q ss_pred -CCcccEEEeccccCCC---------CC---H-----------HHHHHHHHHhcCCCCEEEEEe
Q 016981 224 -DGQFDLVWSMESGEHM---------PD---K-----------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 224 -~~~fD~V~~~~~l~~~---------~~---~-----------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
-+..|+++.+-.+... .+ + ..+++.+...++.+|.++...
T Consensus 105 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~is 168 (296)
T 3k31_A 105 EWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLS 168 (296)
T ss_dssp HHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred HcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEE
Confidence 1468999987655421 11 1 124555666777888887765
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=86.57 E-value=0.43 Score=42.04 Aligned_cols=21 Identities=10% Similarity=0.320 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCCCEEEEEe
Q 016981 243 SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 243 ~~~l~~~~r~LkpgG~l~i~~ 263 (379)
...+.++.++|+|||.+++..
T Consensus 54 ~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 54 YRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCeEEEEEc
Confidence 567888999999999998863
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=86.46 E-value=2.4 Score=37.57 Aligned_cols=99 Identities=16% Similarity=0.131 Sum_probs=66.0
Q ss_pred CCEEEEeCCcccH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----------CCCC
Q 016981 159 PKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~ 225 (379)
++.+|=-|.+.|. .+..|++. |++|+.+|.+.+.++.+.+.+ + .++.++.+|+.+.. -.-+
T Consensus 29 gKvalVTGas~GIG~aiA~~la~~-Ga~V~i~~r~~~~l~~~~~~~---g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 102 (273)
T 4fgs_A 29 AKIAVITGATSGIGLAAAKRFVAE-GARVFITGRRKDVLDAAIAEI---G--GGAVGIQADSANLAELDRLYEKVKAEAG 102 (273)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH---C--TTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHc---C--CCeEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 7888888887764 33444443 899999999998887665544 2 46778899987632 0125
Q ss_pred cccEEEeccccCCCC---C-----HH-----------HHHHHHHHhcCCCCEEEEEe
Q 016981 226 QFDLVWSMESGEHMP---D-----KS-----------KFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 226 ~fD~V~~~~~l~~~~---~-----~~-----------~~l~~~~r~LkpgG~l~i~~ 263 (379)
..|+++.+-...... + ++ .+.+.+.+.|+.+|.++...
T Consensus 103 ~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis 159 (273)
T 4fgs_A 103 RIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG 159 (273)
T ss_dssp CEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred CCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 789998776554331 1 11 24456667788888877664
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=86.42 E-value=3.3 Score=36.20 Aligned_cols=76 Identities=14% Similarity=0.114 Sum_probs=56.6
Q ss_pred CCCEEEEeCCcccH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CC
Q 016981 158 RPKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PD 224 (379)
Q Consensus 158 ~~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~ 224 (379)
+++.+|=-|.+.|. .+..+++. |++|+.+|.+++.++.+.+.++..+ .++.++.+|+.+.. + .-
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~~-Ga~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 82 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRAIAKKFALN-DSIVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFETY 82 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 37888888877775 33444444 8999999999999988888887766 47889999997742 0 12
Q ss_pred CcccEEEecccc
Q 016981 225 GQFDLVWSMESG 236 (379)
Q Consensus 225 ~~fD~V~~~~~l 236 (379)
+..|+++.+-.+
T Consensus 83 G~iDiLVNNAGi 94 (254)
T 4fn4_A 83 SRIDVLCNNAGI 94 (254)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 679999987654
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=85.76 E-value=1.7 Score=37.84 Aligned_cols=102 Identities=18% Similarity=0.131 Sum_probs=63.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEE-eCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGI-TLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PD 224 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gv-D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~ 224 (379)
++++|=.|++.|. +..+++.+ |++|+.+ +.+....+.+.+.+...+ .++.++.+|+.+.. + .-
T Consensus 8 ~k~vlVTGas~GI-G~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (259)
T 3edm_A 8 NRTIVVAGAGRDI-GRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAADKF 84 (259)
T ss_dssp TCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCchH-HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 6788888877654 44444333 8899888 666666666665555443 47889999987742 1 01
Q ss_pred CcccEEEeccccC-C---CCC--H--------------HHHHHHHHHhcCCCCEEEEEe
Q 016981 225 GQFDLVWSMESGE-H---MPD--K--------------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 225 ~~fD~V~~~~~l~-~---~~~--~--------------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+..|+++.+-... . +.+ . ..+.+.+.+.++++|.++...
T Consensus 85 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 143 (259)
T 3edm_A 85 GEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS 143 (259)
T ss_dssp CSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 4689998765433 1 111 1 124455666677788877764
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.74 E-value=3.1 Score=36.21 Aligned_cols=76 Identities=24% Similarity=0.133 Sum_probs=50.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeC-CHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CC-----C
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITL-SPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~-s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~ 224 (379)
+++||=.|+ +|.++..+++.+ |.+|++++- ++..++...+.+...+ .++.++.+|+.+.. +. -
T Consensus 21 ~k~vlItGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 97 (274)
T 1ja9_A 21 GKVALTTGA-GRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSHF 97 (274)
T ss_dssp TCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 677887775 455566655544 789999998 7776666555555443 46888999987642 10 1
Q ss_pred CcccEEEeccccC
Q 016981 225 GQFDLVWSMESGE 237 (379)
Q Consensus 225 ~~fD~V~~~~~l~ 237 (379)
+.+|+|+.+-...
T Consensus 98 ~~~d~vi~~Ag~~ 110 (274)
T 1ja9_A 98 GGLDFVMSNSGME 110 (274)
T ss_dssp SCEEEEECCCCCC
T ss_pred CCCCEEEECCCCC
Confidence 3689998765543
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=85.63 E-value=5.2 Score=31.48 Aligned_cols=94 Identities=10% Similarity=0.072 Sum_probs=57.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----CCCCcccEE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS-PVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLV 230 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s-~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V 230 (379)
..+|+=+|+ |..+..+++.+ |..|+.+|.+ +...+...... +..+.++.+|..+.. ..-...|+|
T Consensus 3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~-----~~~~~~i~gd~~~~~~l~~a~i~~ad~v 75 (153)
T 1id1_A 3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-----GDNADVIPGDSNDSSVLKKAGIDRCRAI 75 (153)
T ss_dssp CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-----CTTCEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh-----cCCCeEEEcCCCCHHHHHHcChhhCCEE
Confidence 457888876 66666665544 7899999997 44444333322 135788899986531 112467888
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEE
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~ 262 (379)
++...- ......+....+.+.|...++..
T Consensus 76 i~~~~~---d~~n~~~~~~a~~~~~~~~ii~~ 104 (153)
T 1id1_A 76 LALSDN---DADNAFVVLSAKDMSSDVKTVLA 104 (153)
T ss_dssp EECSSC---HHHHHHHHHHHHHHTSSSCEEEE
T ss_pred EEecCC---hHHHHHHHHHHHHHCCCCEEEEE
Confidence 764211 11244556667777787777663
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=85.55 E-value=0.43 Score=45.03 Aligned_cols=41 Identities=22% Similarity=0.387 Sum_probs=32.3
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRAN 198 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~ 198 (379)
++.+|+=+|+|. |..+..+++.+|++|+++|.++..++.++
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~ 212 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ 212 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 478999999984 55566667767889999999987766653
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=85.39 E-value=8.4 Score=32.93 Aligned_cols=75 Identities=12% Similarity=0.110 Sum_probs=50.0
Q ss_pred CCCCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-CCCcc
Q 016981 157 KRPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-PDGQF 227 (379)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-~~~~f 227 (379)
.++++||=.|++.| ++..+++.+ |.+|+.++.++..++...+.+ ..++.+..+|+.+.. + ..+..
T Consensus 12 ~~~k~vlVTGas~g-IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~i 85 (249)
T 3f9i_A 12 LTGKTSLITGASSG-IGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL-----KDNYTIEVCNLANKEECSNLISKTSNL 85 (249)
T ss_dssp CTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CSSEEEEECCTTSHHHHHHHHHTCSCC
T ss_pred CCCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----ccCccEEEcCCCCHHHHHHHHHhcCCC
Confidence 35788898887655 444444433 789999999988777665544 247888899987631 1 12468
Q ss_pred cEEEeccccC
Q 016981 228 DLVWSMESGE 237 (379)
Q Consensus 228 D~V~~~~~l~ 237 (379)
|+++.+-...
T Consensus 86 d~li~~Ag~~ 95 (249)
T 3f9i_A 86 DILVCNAGIT 95 (249)
T ss_dssp SEEEECCC--
T ss_pred CEEEECCCCC
Confidence 9999776543
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=85.24 E-value=4.6 Score=30.99 Aligned_cols=90 Identities=12% Similarity=0.159 Sum_probs=50.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----CCCCcccEEE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVW 231 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~ 231 (379)
..+|+=+|+ |..+..+++.+ |.+|+++|.++..++.+++ ....+..+|..+.. ..-+.+|+|+
T Consensus 6 ~~~v~I~G~--G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~--------~~~~~~~~d~~~~~~l~~~~~~~~d~vi 75 (144)
T 2hmt_A 6 NKQFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS--------YATHAVIANATEENELLSLGIRNFEYVI 75 (144)
T ss_dssp CCSEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTT--------TCSEEEECCTTCHHHHHTTTGGGCSEEE
T ss_pred CCcEEEECC--CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--------hCCEEEEeCCCCHHHHHhcCCCCCCEEE
Confidence 567999997 55555555443 7789999998866543321 12455667765421 1124689888
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCCEEEE
Q 016981 232 SMESGEHMPDKSKFVSELARVTAPAGTIII 261 (379)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i 261 (379)
..-.-. .+....+....+.+.+. .++.
T Consensus 76 ~~~~~~--~~~~~~~~~~~~~~~~~-~ii~ 102 (144)
T 2hmt_A 76 VAIGAN--IQASTLTTLLLKELDIP-NIWV 102 (144)
T ss_dssp ECCCSC--HHHHHHHHHHHHHTTCS-EEEE
T ss_pred ECCCCc--hHHHHHHHHHHHHcCCC-eEEE
Confidence 643211 01123444555666675 5544
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=84.88 E-value=5.8 Score=34.71 Aligned_cols=79 Identities=20% Similarity=0.262 Sum_probs=53.1
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCC------------HHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS------------PVQAQRANALAAARGLADKVSFQVGDALQQP- 221 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s------------~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 221 (379)
.++++|=.|++.| ++..+++.+ |++|+.+|.+ ...++...+.+...+ .++.++.+|+.+..
T Consensus 12 ~gk~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~ 88 (278)
T 3sx2_A 12 TGKVAFITGAARG-QGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG--SRIVARQADVRDRES 88 (278)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT--CCEEEEECCTTCHHH
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcC--CeEEEEeCCCCCHHH
Confidence 3678888887655 344444433 8899999987 666666665555544 47999999997742
Q ss_pred ----CC-----CCcccEEEeccccCCC
Q 016981 222 ----FP-----DGQFDLVWSMESGEHM 239 (379)
Q Consensus 222 ----~~-----~~~fD~V~~~~~l~~~ 239 (379)
+. -+..|+++.+-.+...
T Consensus 89 v~~~~~~~~~~~g~id~lv~nAg~~~~ 115 (278)
T 3sx2_A 89 LSAALQAGLDELGRLDIVVANAGIAPM 115 (278)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCC
Confidence 10 1478999987766543
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=84.83 E-value=7.3 Score=34.22 Aligned_cols=74 Identities=20% Similarity=0.148 Sum_probs=50.4
Q ss_pred CCEEEEeCCcccH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CCC
Q 016981 159 PKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 225 (379)
++++|=.|++.|. ++..|++. |.+|+.+|.++..++.+.+.+ + .++.++.+|+.+.. + .-+
T Consensus 29 gk~vlVTGas~gIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 102 (277)
T 3gvc_A 29 GKVAIVTGAGAGIGLAVARRLADE-GCHVLCADIDGDAADAAATKI---G--CGAAACRVDVSDEQQIIAMVDACVAAFG 102 (277)
T ss_dssp TCEEEETTTTSTHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHH---C--SSCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHc---C--CcceEEEecCCCHHHHHHHHHHHHHHcC
Confidence 6788888876654 33444444 889999999988776655544 2 46888999987742 1 014
Q ss_pred cccEEEeccccCC
Q 016981 226 QFDLVWSMESGEH 238 (379)
Q Consensus 226 ~fD~V~~~~~l~~ 238 (379)
..|+++.+-.+.+
T Consensus 103 ~iD~lvnnAg~~~ 115 (277)
T 3gvc_A 103 GVDKLVANAGVVH 115 (277)
T ss_dssp SCCEEEECCCCCC
T ss_pred CCCEEEECCCCCC
Confidence 6899998766543
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=84.55 E-value=6 Score=34.56 Aligned_cols=102 Identities=19% Similarity=0.116 Sum_probs=64.7
Q ss_pred CCEEEEeCCcccH---HHHHHHHHcCCEEEEEe-CCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CC
Q 016981 159 PKNVVDVGCGIGG---SSRYLAKKFGAKCQGIT-LSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PD 224 (379)
Q Consensus 159 ~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD-~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~ 224 (379)
++++|=.|++.|. ++..|++. |.+|+.++ -+....+...+.+...+ .++.++.+|+.+.. + .-
T Consensus 27 ~k~~lVTGas~GIG~aia~~la~~-G~~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 103 (267)
T 3u5t_A 27 NKVAIVTGASRGIGAAIAARLASD-GFTVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAEEAF 103 (267)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHH-TCEEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 6788888876654 34444444 88988874 45555665555555544 47889999987642 1 01
Q ss_pred CcccEEEeccccCCCCC--------HH-----------HHHHHHHHhcCCCCEEEEEe
Q 016981 225 GQFDLVWSMESGEHMPD--------KS-----------KFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 225 ~~fD~V~~~~~l~~~~~--------~~-----------~~l~~~~r~LkpgG~l~i~~ 263 (379)
+..|+++.+-.+..... +. .+++.+.+.++.+|+++...
T Consensus 104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 161 (267)
T 3u5t_A 104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMS 161 (267)
T ss_dssp SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 47899998765543321 11 24556677778888887765
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=84.26 E-value=2.8 Score=38.32 Aligned_cols=89 Identities=16% Similarity=0.042 Sum_probs=57.7
Q ss_pred CEEEEe-CCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC--------CCCcccE
Q 016981 160 KNVVDV-GCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF--------PDGQFDL 229 (379)
Q Consensus 160 ~~vLDi-GcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~fD~ 229 (379)
.+||=. |+| .|..+..+++..|++|+++|.++..++.+++ .|. . ..+ |..+..+ ....+|+
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----~Ga--~-~~~--~~~~~~~~~~v~~~~~~~g~D~ 236 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKD----IGA--A-HVL--NEKAPDFEATLREVMKAEQPRI 236 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHH----HTC--S-EEE--ETTSTTHHHHHHHHHHHHCCCE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC--C-EEE--ECCcHHHHHHHHHHhcCCCCcE
Confidence 566654 333 5677777887778999999999988887765 232 1 122 2222111 1136999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|+-.-. ...+..+.+.|++||++++...
T Consensus 237 vid~~g-------~~~~~~~~~~l~~~G~iv~~G~ 264 (349)
T 3pi7_A 237 FLDAVT-------GPLASAIFNAMPKRARWIIYGR 264 (349)
T ss_dssp EEESSC-------HHHHHHHHHHSCTTCEEEECCC
T ss_pred EEECCC-------ChhHHHHHhhhcCCCEEEEEec
Confidence 985432 2335778899999999998764
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=83.99 E-value=2.1 Score=34.01 Aligned_cols=93 Identities=22% Similarity=0.223 Sum_probs=50.8
Q ss_pred CCCEEEEeCCcccHHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----CCCCcccEE
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKK---FGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V 230 (379)
++.+|+=+|+| .++..+++. .|.+|+++|.++..++.++. . ....++.+|..+.. ..-..+|+|
T Consensus 18 ~~~~v~IiG~G--~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~----~g~~~~~~d~~~~~~l~~~~~~~ad~V 88 (155)
T 2g1u_A 18 KSKYIVIFGCG--RLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---E----FSGFTVVGDAAEFETLKECGMEKADMV 88 (155)
T ss_dssp CCCEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---T----CCSEEEESCTTSHHHHHTTTGGGCSEE
T ss_pred CCCcEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---c----CCCcEEEecCCCHHHHHHcCcccCCEE
Confidence 47899999985 444333332 37899999998866544321 1 23455666654321 112458888
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEE
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~ 262 (379)
+..-.- ......+..+.+.+.|...++..
T Consensus 89 i~~~~~---~~~~~~~~~~~~~~~~~~~iv~~ 117 (155)
T 2g1u_A 89 FAFTND---DSTNFFISMNARYMFNVENVIAR 117 (155)
T ss_dssp EECSSC---HHHHHHHHHHHHHTSCCSEEEEE
T ss_pred EEEeCC---cHHHHHHHHHHHHHCCCCeEEEE
Confidence 864221 11233444455555555555543
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=83.75 E-value=2.6 Score=35.58 Aligned_cols=87 Identities=16% Similarity=0.174 Sum_probs=55.4
Q ss_pred EEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----CCCCcccEEEec
Q 016981 161 NVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWSM 233 (379)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~~ 233 (379)
+|+=+|+ |.++..+++.+ +..|+++|.++..++...+. ..+.++.+|..+.. ..-...|+|++.
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~-------~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 72 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK-------LKATIIHGDGSHKEILRDAEVSKNDVVVIL 72 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH-------SSSEEEESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH-------cCCeEEEcCCCCHHHHHhcCcccCCEEEEe
Confidence 4666776 56666666544 78999999999877764432 14678889987632 112468888864
Q ss_pred cccCCCCCH--HHHHHHHHHhcCCCCEEEE
Q 016981 234 ESGEHMPDK--SKFVSELARVTAPAGTIII 261 (379)
Q Consensus 234 ~~l~~~~~~--~~~l~~~~r~LkpgG~l~i 261 (379)
. ++. ...+..+.+.+.|...++.
T Consensus 73 ~-----~~d~~n~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 73 T-----PRDEVNLFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp C-----SCHHHHHHHHHHHHHTSCCCEEEE
T ss_pred c-----CCcHHHHHHHHHHHHHcCCCeEEE
Confidence 2 232 3455556666667766654
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=83.72 E-value=6.5 Score=33.87 Aligned_cols=76 Identities=21% Similarity=0.148 Sum_probs=49.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeC-CHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CC-----C
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITL-SPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~-s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~ 224 (379)
+++||=.|++ |.++..+++.+ |.+|+.++- ++..++...+.+...+ .++.++.+|+.+.. +. -
T Consensus 7 ~k~vlITGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (261)
T 1gee_A 7 GKVVVITGSS-TGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIKEF 83 (261)
T ss_dssp TCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 6678877754 55555555544 789999998 7766665555554433 46888899987632 10 1
Q ss_pred CcccEEEeccccC
Q 016981 225 GQFDLVWSMESGE 237 (379)
Q Consensus 225 ~~fD~V~~~~~l~ 237 (379)
+.+|+|+.+-...
T Consensus 84 g~id~li~~Ag~~ 96 (261)
T 1gee_A 84 GKLDVMINNAGLE 96 (261)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 3689998776543
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=83.69 E-value=5.4 Score=35.06 Aligned_cols=102 Identities=19% Similarity=0.169 Sum_probs=62.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHH-HHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CC-----C
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPV-QAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~ 224 (379)
++++|=.|++. .++..+++.+ |.+|+.++.+.. ..+.+.+.+...+ .++.++.+|+.+.. +. -
T Consensus 29 ~k~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 105 (283)
T 1g0o_A 29 GKVALVTGAGR-GIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKIF 105 (283)
T ss_dssp TCEEEETTTTS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 56788777655 4455555444 889999988754 3444444444433 46888899987632 10 1
Q ss_pred CcccEEEeccccCCCC-----CH--------------HHHHHHHHHhcCCCCEEEEEe
Q 016981 225 GQFDLVWSMESGEHMP-----DK--------------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 225 ~~fD~V~~~~~l~~~~-----~~--------------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+..|+++.+-...... +. ..+++.+.+.|+.+|+++...
T Consensus 106 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 163 (283)
T 1g0o_A 106 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 163 (283)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4689999876554321 11 124456667777788887765
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=83.67 E-value=4.6 Score=38.14 Aligned_cols=88 Identities=18% Similarity=0.148 Sum_probs=53.4
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
.+++|+=+|+|. |......++.+|++|+++|.++.....+.. .| .. ..++.+. -...|+|+....-
T Consensus 219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~----~G----~~--v~~Leea---l~~ADIVi~atgt 285 (435)
T 3gvp_A 219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACM----DG----FR--LVKLNEV---IRQVDIVITCTGN 285 (435)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TT----CE--ECCHHHH---TTTCSEEEECSSC
T ss_pred cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHH----cC----CE--eccHHHH---HhcCCEEEECCCC
Confidence 488999999985 544445555558999999999865443332 12 22 2233222 1357998874222
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.++-+ .+..+.+|||+.++-+.
T Consensus 286 ~~lI~-----~e~l~~MK~gailINvg 307 (435)
T 3gvp_A 286 KNVVT-----REHLDRMKNSCIVCNMG 307 (435)
T ss_dssp SCSBC-----HHHHHHSCTTEEEEECS
T ss_pred cccCC-----HHHHHhcCCCcEEEEec
Confidence 23211 25667899998776654
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=83.35 E-value=10 Score=32.67 Aligned_cols=73 Identities=19% Similarity=0.161 Sum_probs=49.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 225 (379)
++++|=.|++.| ++..+++.+ |.+|+.+|.+...++...+.+ ..++.++.+|+.+.. + .-+
T Consensus 8 ~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 81 (259)
T 4e6p_A 8 GKSALITGSARG-IGRAFAEAYVREGATVAIADIDIERARQAAAEI-----GPAAYAVQMDVTRQDSIDAAIAATVEHAG 81 (259)
T ss_dssp TCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred CCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCCceEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 678888886654 444444433 889999999987766655443 246888999987632 1 124
Q ss_pred cccEEEeccccC
Q 016981 226 QFDLVWSMESGE 237 (379)
Q Consensus 226 ~fD~V~~~~~l~ 237 (379)
..|+++.+-...
T Consensus 82 ~id~lv~~Ag~~ 93 (259)
T 4e6p_A 82 GLDILVNNAALF 93 (259)
T ss_dssp SCCEEEECCCCC
T ss_pred CCCEEEECCCcC
Confidence 789999876654
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=82.74 E-value=13 Score=32.85 Aligned_cols=89 Identities=17% Similarity=0.064 Sum_probs=51.4
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-ccCCCCCCCCCcccEEEeccc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~fD~V~~~~~ 235 (379)
++++|+=+|+|. |......+..+|.+|+++|.++...+.+. ..| +.... .+..+. -...|+|+..-.
T Consensus 154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~----~~g----~~~~~~~~l~~~---l~~aDvVi~~~p 222 (293)
T 3d4o_A 154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIA----EMG----MEPFHISKAAQE---LRDVDVCINTIP 222 (293)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH----HTT----SEEEEGGGHHHH---TTTCSEEEECCS
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH----HCC----CeecChhhHHHH---hcCCCEEEECCC
Confidence 488999999864 33333333444889999999986554433 222 23221 121111 145899987655
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.+.+ +. +..+.+|||+.++-..
T Consensus 223 ~~~i-~~-----~~l~~mk~~~~lin~a 244 (293)
T 3d4o_A 223 ALVV-TA-----NVLAEMPSHTFVIDLA 244 (293)
T ss_dssp SCCB-CH-----HHHHHSCTTCEEEECS
T ss_pred hHHh-CH-----HHHHhcCCCCEEEEec
Confidence 4333 22 2445789998766543
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=82.47 E-value=13 Score=32.18 Aligned_cols=77 Identities=18% Similarity=0.144 Sum_probs=50.9
Q ss_pred CCCEEEEeCCcccH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CCCCcccE
Q 016981 158 RPKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~fD~ 229 (379)
.++.+|=-|.+.|. .+..|++. |++|+.+|.+.. +.+.+.+...+ .++.++.+|+.+.. +..+..|+
T Consensus 8 ~GKvalVTGas~GIG~aiA~~la~~-Ga~Vvi~~r~~~--~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~g~iDi 82 (247)
T 4hp8_A 8 EGRKALVTGANTGLGQAIAVGLAAA-GAEVVCAARRAP--DETLDIIAKDG--GNASALLIDFADPLAAKDSFTDAGFDI 82 (247)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCC--HHHHHHHHHTT--CCEEEEECCTTSTTTTTTSSTTTCCCE
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHc-CCEEEEEeCCcH--HHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHhCCCCE
Confidence 37788888877765 34444444 899999998743 23334444444 47888999987642 44578999
Q ss_pred EEeccccCCC
Q 016981 230 VWSMESGEHM 239 (379)
Q Consensus 230 V~~~~~l~~~ 239 (379)
++.+-.+...
T Consensus 83 LVNNAGi~~~ 92 (247)
T 4hp8_A 83 LVNNAGIIRR 92 (247)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCCCC
Confidence 9987665443
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=81.66 E-value=13 Score=32.63 Aligned_cols=75 Identities=16% Similarity=0.094 Sum_probs=48.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCH-HHHHHHHHHHH-HcCCCCCeEEEEccCCC----CC-----C--
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSP-VQAQRANALAA-ARGLADKVSFQVGDALQ----QP-----F-- 222 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~-~~~~~a~~~~~-~~~~~~~i~~~~~d~~~----~~-----~-- 222 (379)
++++|=.|++.| ++..+++.+ |.+|+.++.++ ..++.+.+.+. ..+ .++.++.+|+.+ .. +
T Consensus 23 ~k~~lVTGas~g-IG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~--~~~~~~~~Dv~~~~~~~~~v~~~~~~ 99 (288)
T 2x9g_A 23 APAAVVTGAAKR-IGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERS--NTAVVCQADLTNSNVLPASCEEIINS 99 (288)
T ss_dssp CCEEEETTCSSH-HHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHST--TCEEEEECCCSCSTTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcC--CceEEEEeecCCccCCHHHHHHHHHH
Confidence 667887776654 444444433 88999999887 66655555444 333 478899999887 21 0
Q ss_pred ---CCCcccEEEecccc
Q 016981 223 ---PDGQFDLVWSMESG 236 (379)
Q Consensus 223 ---~~~~fD~V~~~~~l 236 (379)
.-+..|+++.+-.+
T Consensus 100 ~~~~~g~iD~lvnnAG~ 116 (288)
T 2x9g_A 100 CFRAFGRCDVLVNNASA 116 (288)
T ss_dssp HHHHHSCCCEEEECCCC
T ss_pred HHHhcCCCCEEEECCCC
Confidence 01468999987654
|
| >2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.37 E-value=1.3 Score=34.56 Aligned_cols=71 Identities=18% Similarity=0.230 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCeEEEEcc-CC--CCCCCCCcccEEEeccccC-C-CCCHHHHHHHHHHhcCCCCEEEE
Q 016981 190 SPVQAQRANALAAARGLADKVSFQVGD-AL--QQPFPDGQFDLVWSMESGE-H-MPDKSKFVSELARVTAPAGTIII 261 (379)
Q Consensus 190 s~~~~~~a~~~~~~~~~~~~i~~~~~d-~~--~~~~~~~~fD~V~~~~~l~-~-~~~~~~~l~~~~r~LkpgG~l~i 261 (379)
.|+.++.++....+.+ ...+.....| +. ...+++..||.|+...--. . ..-+..++..+++.|||||.|.-
T Consensus 21 ~pe~le~~k~~~~~~~-~~~~d~qmlDRLa~G~VsLp~stYD~V~~lt~~~~~~~~l~r~li~~l~~aLkpgG~L~g 96 (136)
T 2km1_A 21 TPELVENTKAQAASKK-VKFVDQFLINKLNDGSITLENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLIG 96 (136)
T ss_dssp SHHHHHHHHHHHHHTT-EEEEEEEEHHHHHHTCCCCCSSSCCSEEEECCCSSCSCCCCHHHHHHHHTTCCTTCCEEC
T ss_pred CHHHHHHHHHhhhccc-cchhhHHHHHHHhcCcccCCcccccEEEEecCCccchhhcCHHHHHHHHHHhCCCCEEEe
Confidence 4666777776665521 0123333333 11 1246689999998644322 2 23348999999999999999875
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=81.27 E-value=1.4 Score=42.54 Aligned_cols=60 Identities=15% Similarity=0.011 Sum_probs=43.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
...+++|+=||.|.++.-+.+.....|.++|+++.+.+.-+.++. ..+...++..|+.++
T Consensus 87 ~~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~---~~p~~~~~~~DI~~i 146 (482)
T 3me5_A 87 YAFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHY---CDPATHHFNEDIRDI 146 (482)
T ss_dssp CSEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSC---CCTTTCEEESCTHHH
T ss_pred ccceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcc---cCCCcceeccchhhh
Confidence 357999999999999988877532348899999988887766542 112445667887654
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=81.00 E-value=8.3 Score=33.46 Aligned_cols=75 Identities=19% Similarity=0.107 Sum_probs=54.2
Q ss_pred CCEEEEeCCcccH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CCC
Q 016981 159 PKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 225 (379)
++++|=.|++.|. ++..|+++ |.+|+.+|.++..++.+.+.+...+ .++.++.+|+.+.. + .-+
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 87 (264)
T 3ucx_A 11 DKVVVISGVGPALGTTLARRCAEQ-GADLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKAYG 87 (264)
T ss_dssp TCEEEEESCCTTHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred CcEEEEECCCcHHHHHHHHHHHHC-cCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 7789988887664 34444444 8899999999988888777776654 47899999987742 1 124
Q ss_pred cccEEEecccc
Q 016981 226 QFDLVWSMESG 236 (379)
Q Consensus 226 ~fD~V~~~~~l 236 (379)
..|+++.+-..
T Consensus 88 ~id~lv~nAg~ 98 (264)
T 3ucx_A 88 RVDVVINNAFR 98 (264)
T ss_dssp CCSEEEECCCS
T ss_pred CCcEEEECCCC
Confidence 78999977643
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=80.87 E-value=7.1 Score=35.18 Aligned_cols=89 Identities=20% Similarity=0.262 Sum_probs=55.2
Q ss_pred CCEEEEeCCcc--cHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecc
Q 016981 159 PKNVVDVGCGI--GGSSRYLAKKFGA--KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGt--G~~~~~l~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~ 234 (379)
..+|.=||+|. |.++..+.+. |. +|+++|.++..++.+++ .|. +.-...|..+. .-...|+|+..-
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~-G~~~~V~~~dr~~~~~~~a~~----~G~---~~~~~~~~~~~--~~~~aDvVilav 102 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINPESISKAVD----LGI---IDEGTTSIAKV--EDFSPDFVMLSS 102 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHHHH----TTS---CSEEESCTTGG--GGGCCSEEEECS
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC-CCCCEEEEEECCHHHHHHHHH----CCC---cchhcCCHHHH--hhccCCEEEEeC
Confidence 46899999874 2344445444 66 99999999988776653 332 11122333320 123579998653
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCEEE
Q 016981 235 SGEHMPDKSKFVSELARVTAPAGTII 260 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~ 260 (379)
-.. ....+++++...|+||..++
T Consensus 103 p~~---~~~~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 103 PVR---TFREIAKKLSYILSEDATVT 125 (314)
T ss_dssp CGG---GHHHHHHHHHHHSCTTCEEE
T ss_pred CHH---HHHHHHHHHhhccCCCcEEE
Confidence 322 24678899999999987554
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=80.10 E-value=5.8 Score=34.52 Aligned_cols=102 Identities=20% Similarity=0.191 Sum_probs=63.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCC---HHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS---PVQAQRANALAAARGLADKVSFQVGDALQQP-----F----- 222 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s---~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~----- 222 (379)
++++|=.|++.| ++..+++.+ |++|+.++.+ ...++...+.+...+ .++.++.+|+.+.. +
T Consensus 11 ~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 87 (262)
T 3ksu_A 11 NKVIVIAGGIKN-LGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQG--AKVALYQSDLSNEEEVAKLFDFAEK 87 (262)
T ss_dssp TCEEEEETCSSH-HHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTT--CEEEEEECCCCSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence 678888887655 455555554 7899998754 344555555454433 47889999987742 1
Q ss_pred CCCcccEEEeccccCCCCC-----H---H-----------HHHHHHHHhcCCCCEEEEEe
Q 016981 223 PDGQFDLVWSMESGEHMPD-----K---S-----------KFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 223 ~~~~fD~V~~~~~l~~~~~-----~---~-----------~~l~~~~r~LkpgG~l~i~~ 263 (379)
.-+..|+++.+-.+..... . . .+++.+.+.|+++|.+++..
T Consensus 88 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~is 147 (262)
T 3ksu_A 88 EFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIA 147 (262)
T ss_dssp HHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 0147899998765543211 1 1 24445556667788887764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 379 | ||||
| d2o57a1 | 282 | c.66.1.18 (A:16-297) Putative sarcosine dimethylgl | 8e-28 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 2e-23 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 1e-18 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 2e-16 | |
| d1kpga_ | 285 | c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [ | 8e-15 | |
| d1kpia_ | 291 | c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [ | 9e-14 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 5e-13 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 8e-13 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 5e-12 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 7e-12 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 9e-12 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 1e-11 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 6e-11 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 1e-10 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 2e-10 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 2e-10 | |
| d2fk8a1 | 280 | c.66.1.18 (A:22-301) Methoxy mycolic acid synthase | 1e-09 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 2e-09 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 4e-09 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 5e-09 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 7e-09 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 8e-09 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 1e-08 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 1e-08 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 2e-08 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 3e-08 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 3e-08 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 5e-08 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 7e-08 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 1e-07 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 2e-07 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 6e-07 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 8e-07 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 3e-06 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 5e-06 | |
| d2ex4a1 | 222 | c.66.1.42 (A:2-224) Adrenal gland protein AD-003 ( | 1e-05 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 1e-05 | |
| d1yzha1 | 204 | c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra | 6e-05 | |
| d2nxca1 | 254 | c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT | 8e-05 | |
| d2fcaa1 | 204 | c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltr | 1e-04 | |
| d1ne2a_ | 197 | c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae | 4e-04 | |
| d2bzga1 | 229 | c.66.1.36 (A:17-245) Thiopurine S-methyltransferas | 0.001 |
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Score = 108 bits (270), Expect = 8e-28
Identities = 61/244 (25%), Positives = 103/244 (42%), Gaps = 15/244 (6%)
Query: 92 ARELKEGIAEFYD--ESSSLWEDIW-GDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRF 148
++ +K+ +YD +S + +W G+ +H G Y V + R A +R E
Sbjct: 1 SKTVKDNAEIYYDDDDSDRFYFHVWGGEDIHVGLY--KEPVDQDEIREASLRTDEWLASE 58
Query: 149 AGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD 208
+R +D+G G GG++R+L +KFG + ++PVQ +R GLAD
Sbjct: 59 L-AMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLAD 117
Query: 209 KVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268
++ + G L+ P D +D +WS ++ H PDK K E ARV P G + I D
Sbjct: 118 NITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKED 177
Query: 269 LAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWP 328
++ ++ I D L S Y L + L ++ ++ +
Sbjct: 178 ---------GIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRPDSLVHHYS 228
Query: 329 AVIH 332
V
Sbjct: 229 KVKA 232
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 97.2 bits (241), Expect = 2e-23
Identities = 35/269 (13%), Positives = 74/269 (27%), Gaps = 47/269 (17%)
Query: 93 RELKEGIAEFYDESSSLWEDI--------WGDHMHHGFYEPDSSVSVSDHRAAQVRMIEE 144
+ + + S+ L I D YEP S + ++ +
Sbjct: 86 KGTTQPMKLNTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEV---YGETSFDLVAQ 142
Query: 145 TLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPV-------QAQR 196
+ +++D VD+G G+G +A G+ + + +
Sbjct: 143 MIDEIKMTDD-----DLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 197
Query: 197 ANALAAARGLA-DKVSFQVGDALQQPFPDGQFDL-VWSMESGEHMPDKSKFVSELARVTA 254
G + + + GD L + + + + V + + P+ + E
Sbjct: 198 FRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMK 257
Query: 255 PAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314
G I+ + AP + L I + V
Sbjct: 258 EGGRIV----SSKPFAPLNFRINSRN---LSDIGTIMRVVELSPLKGSV----------- 299
Query: 315 KAEDWSQNVAPFWPAVIHSALTWKGFTSL 343
W+ ++ I + F+SL
Sbjct: 300 ---SWTGKPVSYYLHTIDRTILENYFSSL 325
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 84.0 bits (207), Expect = 1e-18
Identities = 24/220 (10%), Positives = 61/220 (27%), Gaps = 42/220 (19%)
Query: 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRAN 198
+ + + + + T +D+G G+G A + G A G + +
Sbjct: 203 NFLSDVYQQCQLKKGDT-----FMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTI 257
Query: 199 ALAAARGLADK----------VSFQVGDALQQPFPD--GQFDLVWSMESGEHMPDKSKFV 246
K S + + Q D++ + + D +K V
Sbjct: 258 LQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVIL-VNNFLFDEDLNKKV 316
Query: 247 SELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLL 306
++ + II + L + + E + L
Sbjct: 317 EKILQTAKVGCKII----SLKSLRSLTYQINFYNVE------------------NIFNRL 354
Query: 307 QSLSLEDIK-AEDWSQNVAPFWPAVIHSALTWKGFTSLLR 345
+ + + + W+ + ++ + + + F+ R
Sbjct: 355 KVQRYDLKEDSVSWTHSGGEYYISTVMEDVDESLFSPAAR 394
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 76.2 bits (186), Expect = 2e-16
Identities = 41/210 (19%), Positives = 74/210 (35%), Gaps = 17/210 (8%)
Query: 128 SVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGI 187
++S S+HR EE G K ++D+G G G A+ G GI
Sbjct: 5 TISESEHRIHN-PFTEEKYATLGRVLRM-KPGTRILDLGSGSGEMLCTWARDHGITGTGI 62
Query: 188 TLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVS 247
+S + +A A G++++V F DA + + D+ + + +
Sbjct: 63 DMSSLFTAQAKRRAEELGVSERVHFIHNDA-AGYVANEKCDVAACVGATWIAGGFAGAEE 121
Query: 248 ELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQ 307
LA+ P G ++I R L +EE + + C + + V
Sbjct: 122 LLAQSLKPGGIMLIGEPYWRQLPATEE---------IAQACGVSSTSDFLTLPGLVGAFD 172
Query: 308 SLSLEDIKA-----EDWSQNVAPFWPAVIH 332
L + ++ E W + A W +
Sbjct: 173 DLGYDVVEMVLADQEGWDRYEAAKWLTMRR 202
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 71.8 bits (175), Expect = 8e-15
Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 16/177 (9%)
Query: 96 KEGIAEFYDESSSLWEDIWGDHMHH--GFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSE 153
+ YD S + + ++E D + AQ+ I+ L G+
Sbjct: 7 FANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDD----MTLQEAQIAKIDLALGKLGLQP 62
Query: 154 DPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213
++DVGCG G + +K+ G+TLS QA L A
Sbjct: 63 G-----MTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVL 117
Query: 214 VGDALQQPFPDGQFDLVWSMESGEHMPDKS--KFVSELARVTAPAGTIIIVTWCHRD 268
+ D D + S+ + EH + F S R+ G +++ T
Sbjct: 118 LA---GWEQFDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLH 171
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 68.8 bits (167), Expect = 9e-14
Identities = 36/202 (17%), Positives = 68/202 (33%), Gaps = 23/202 (11%)
Query: 97 EGIAEFYDESSSLWEDIWGDHMH--HGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSED 154
E + YD+S+ ++ M ++E AQ + L +
Sbjct: 7 EAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDM----TLEEAQYAKRKLALDKLNLEPG 62
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
++D+GCG G + R+ ++ G+TLS Q A+ + ++
Sbjct: 63 -----MTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI 117
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDK---------SKFVSELARVTAPAGTIIIVTWC 265
D D + S+ + EH D F + +T G +++ T
Sbjct: 118 ---QGWEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT 174
Query: 266 HRDLAPSEESLQPWEQELLKKI 287
D ++E LL+ I
Sbjct: 175 IPDKEEAQELGLTSPMSLLRFI 196
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 66.4 bits (161), Expect = 5e-13
Identities = 35/199 (17%), Positives = 62/199 (31%), Gaps = 11/199 (5%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
+P ++VD GCG G L + + + A A R L F GD
Sbjct: 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGD 85
Query: 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT--WCHRDLAPSEE 274
A + D ++D+ HM + ++ G II W + +
Sbjct: 86 ATEIELND-KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLD 144
Query: 275 SLQPWEQELLKKICDAYYLPAWCSTAD------YVKLLQSLSLEDIKAEDWSQNVAPFWP 328
+ E L + + + D L L +++I+ + F
Sbjct: 145 GEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVKNIECRVSDK--VNFLD 202
Query: 329 AVIHSALTWKGFTSLLRTG 347
+ +H + SL G
Sbjct: 203 SNMHHNDKNDLYQSLKEEG 221
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 64.5 bits (156), Expect = 8e-13
Identities = 27/138 (19%), Positives = 43/138 (31%), Gaps = 4/138 (2%)
Query: 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANA 199
+R + + VDVGCG GG + + I +P
Sbjct: 15 GPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLE-LAGRVRRVYAIDRNPEAISTTEM 73
Query: 200 LAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTI 259
GL D V+ GDA + D+ SG + + + + P G I
Sbjct: 74 NLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQE---ILRIIKDKLKPGGRI 130
Query: 260 IIVTWCHRDLAPSEESLQ 277
I+ + E L+
Sbjct: 131 IVTAILLETKFEAMECLR 148
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 63.3 bits (153), Expect = 5e-12
Identities = 30/190 (15%), Positives = 57/190 (30%), Gaps = 16/190 (8%)
Query: 103 YDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQ-VRMIEETLRFAGVSEDPTKRPKN 161
+ +E ++G E + + ++E +R A K +
Sbjct: 55 GETRKPDYELLYGSDTVTVHVENGIKYKLDVAKIMFSPANVKERVRMA----KVAKPDEL 110
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221
VVD+ GIG S +A AK I P + + D++S D
Sbjct: 111 VVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF- 169
Query: 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ 281
+ D + ++ +F+ + + I E+ +
Sbjct: 170 PGENIADRILMG----YVVRTHEFIPKALSIAKDGAIIHYHNTVP------EKLMPREPF 219
Query: 282 ELLKKICDAY 291
E K+I Y
Sbjct: 220 ETFKRITKEY 229
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 62.7 bits (151), Expect = 7e-12
Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 5/118 (4%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
KR +V+D+GCG GG + + G+ ++ V A A KV F+ D
Sbjct: 23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQD 82
Query: 217 ALQQPF-PDGQFDLVWSMESGEHMP----DKSKFVSELARVTAPAGTIIIVTWCHRDL 269
+ + +FD++ S S + +AR P G I+ +
Sbjct: 83 SYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVI 140
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 63.0 bits (152), Expect = 9e-12
Identities = 35/186 (18%), Positives = 57/186 (30%), Gaps = 41/186 (22%)
Query: 96 KEGIAEFYDES--SSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVR-MIEETLRFAGVS 152
EGI + Y + + +W+ GD R A+ + + LR
Sbjct: 14 AEGIPDQYADGEAARVWQLYIGDT---------------RSRTAEYKAWLLGLLR----- 53
Query: 153 EDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSF 212
V+DV CG G S L ++ G + S + A R
Sbjct: 54 ---QHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDK 109
Query: 213 QVGDALQ-------QPFPDGQFDLVWSMESGEHMPDKS-------KFVSELARVTAPAGT 258
V + P DG ++ S H+PD + +A + P G
Sbjct: 110 WVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGL 169
Query: 259 IIIVTW 264
++I
Sbjct: 170 LVIDHR 175
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 61.9 bits (149), Expect = 1e-11
Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 8/158 (5%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221
V+D+G G G ++ + +C G+ + + A++ A +G+ + Q P
Sbjct: 20 VLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAE-SLP 77
Query: 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ 281
FPD FD++ + H D K V E+ARV G ++V P + L +
Sbjct: 78 FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA----PEDPVLDEF-V 132
Query: 282 ELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319
L ++ D ++ S +++ + + L + W
Sbjct: 133 NHLNRLRDPSHVRES-SLSEWQAMFSANQLAYQDIQKW 169
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.4 bits (145), Expect = 6e-11
Identities = 27/201 (13%), Positives = 57/201 (28%), Gaps = 25/201 (12%)
Query: 130 SVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQ---- 185
+ S +++ L TK ++ +G G G + K A+
Sbjct: 12 NHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCI 71
Query: 186 ---GITLSPVQAQRANALAAARGLADKVSFQ--------VGDALQQPFPDGQFDLVWSME 234
+ S Q + L A + V F + + ++D + ++
Sbjct: 72 NNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQ 131
Query: 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP 294
++ D + + ++I+ W++ L KK +
Sbjct: 132 MLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGS---------SGWDK-LWKKYGSRFPQD 181
Query: 295 AWCSTADYVKLLQSLSLEDIK 315
C L Q L +K
Sbjct: 182 DLCQYITSDDLTQMLDNLGLK 202
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.5 bits (143), Expect = 1e-10
Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 5/128 (3%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
+ K V+DVGCG G S + AK K G+ S +A + L D ++ G
Sbjct: 34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGK 92
Query: 217 ALQQPFPDGQFDLVWSMESGEHMPDKS---KFVSELARVTAPAGTIIIVTWCHRDLAPSE 273
+ P + D++ S G + +S + + A G + C L
Sbjct: 93 IEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGG-SVYPDICTISLVAVS 151
Query: 274 ESLQPWEQ 281
+ + ++
Sbjct: 152 DVNKHADR 159
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 58.5 bits (140), Expect = 2e-10
Identities = 30/178 (16%), Positives = 61/178 (34%), Gaps = 13/178 (7%)
Query: 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALA 201
+ + ++ A + + + V+DV G G + A K L+ + A A
Sbjct: 4 LAKLMQIAALKGN-----EEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFI 57
Query: 202 AARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261
G Q + + + + H P+ + FVSE RV G +++
Sbjct: 58 EGNGHQQVEYVQGDAEQMPFTDERFHIVTCRI-AAHHFPNPASFVSEAYRVLKKGGQLLL 116
Query: 262 VTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319
V + + E+E A+ +D++K+L+ E + +
Sbjct: 117 VDNSAPENDAFDVFYNYVEKERDYSHHRAW------KKSDWLKMLEEAGFELEELHCF 168
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.1 bits (142), Expect = 2e-10
Identities = 31/132 (23%), Positives = 48/132 (36%), Gaps = 9/132 (6%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217
+ K V+DVGCG G S + AK G+ +S + A L G +DK++ G
Sbjct: 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKL 96
Query: 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVS---ELARVTAPAGTII-----IVTWCHRDL 269
P + D++ S G + +S + G I I D
Sbjct: 97 EDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDS 156
Query: 270 APSEESLQPWEQ 281
+E L W+
Sbjct: 157 QYKDEKLNYWQD 168
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 56.5 bits (135), Expect = 1e-09
Identities = 33/236 (13%), Positives = 61/236 (25%), Gaps = 18/236 (7%)
Query: 103 YDESSSLWEDIWGDHMHH--GFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPK 160
YD S + + ++EP AQ ++ L +
Sbjct: 4 YDVSDDFFALFQDPTRTYSCAYFEPPE----LTLEEAQYAKVDLNLDKLDLKPG-----M 54
Query: 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220
++D+GCG G + R ++F G+TLS Q R + A+ +
Sbjct: 55 TLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF 114
Query: 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWE 280
P + + + E H F + G + + + +
Sbjct: 115 AEPVDRIVSIEAFEHFGHEN-YDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLS 173
Query: 281 QELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALT 336
E + I + + E V H T
Sbjct: 174 FETARFI-KFIVTEIFPGGRLPS-----TEMMVEHGEKAGFTVPEPLSLRPHYIKT 223
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 55.5 bits (133), Expect = 2e-09
Identities = 20/140 (14%), Positives = 43/140 (30%), Gaps = 5/140 (3%)
Query: 150 GVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLA 207
G+ P K K+V+ +G G ++ +++ G K GI SP + + R
Sbjct: 65 GLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNI 124
Query: 208 DKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW-CH 266
+ + + D+++ + G +I
Sbjct: 125 VPILGDATKPEEYRALVPKVDVIFEDV--AQPTQAKILIDNAEVYLKRGGYGMIAVKSRS 182
Query: 267 RDLAPSEESLQPWEQELLKK 286
D+ E + + L +
Sbjct: 183 IDVTKEPEQVFREVERELSE 202
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 54.3 bits (130), Expect = 4e-09
Identities = 20/123 (16%), Positives = 37/123 (30%), Gaps = 8/123 (6%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQ--GITLSPVQAQRANALAAARGLADKVSFQV 214
+ ++++VG G G S Y+ K + ++A + V
Sbjct: 84 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSR 143
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE 274
D D +D V + +PD V ++A + P +
Sbjct: 144 SDI-ADFISDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVL 197
Query: 275 SLQ 277
SL
Sbjct: 198 SLS 200
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.3 bits (129), Expect = 5e-09
Identities = 17/175 (9%), Positives = 36/175 (20%), Gaps = 41/175 (23%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV-- 214
+ ++D+G G A + + A + V
Sbjct: 50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKF 109
Query: 215 -------------------------------GDALQQPFPDGQFDLVWSMESGEHMP--- 240
P D V ++ + E
Sbjct: 110 ACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSL 169
Query: 241 -DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPW----EQELLKKICDA 290
+ LA + P G ++ + + E+ + + DA
Sbjct: 170 DAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDA 224
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 53.0 bits (126), Expect = 7e-09
Identities = 23/126 (18%), Positives = 39/126 (30%), Gaps = 5/126 (3%)
Query: 151 VSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKV 210
++ P +D+GCG G +S YLA A AA +
Sbjct: 23 LAAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQT 82
Query: 211 SFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRD 268
+ L ++D + S + + ++ + R T P G +IV
Sbjct: 83 DLVDLNTLTFDG---EYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTP 139
Query: 269 LAPSEE 274
P
Sbjct: 140 DFPCTV 145
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 53.0 bits (126), Expect = 8e-09
Identities = 30/218 (13%), Positives = 62/218 (28%), Gaps = 21/218 (9%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
P RP N++++G G + L + + S A++ A+G +
Sbjct: 17 PFFRPGNLLELGSFKGDFTSRLQEH-FNDITCVEASE------EAISHAQGRLKDGITYI 69
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELA-RVTAPAGTIIIVTWCHRDLAPSE 273
+ ++D + EH+ D + + A G + +V ++
Sbjct: 70 HSRFEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQI 129
Query: 274 ESLQPWEQELLKKICDAYYLPAWC--STADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVI 331
+ C + + L+ +
Sbjct: 130 AVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS-----------GIF 178
Query: 332 HSALTWKGFTSLLRTGKLSILCCWNLYVISYNYLDISA 369
AL + +L+T LS Y + Y D+ A
Sbjct: 179 FKALANFQWDQILQTDILSKEYLDGCYQLGQQYPDLCA 216
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 53.5 bits (128), Expect = 1e-08
Identities = 19/110 (17%), Positives = 33/110 (30%), Gaps = 9/110 (8%)
Query: 160 KNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRA--NALAAARGLADKVSFQVG 215
V++ G G G + L + G + A+ A N D V
Sbjct: 98 ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS 157
Query: 216 DALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265
D PDG D M + + ++R+ G +++
Sbjct: 158 DLADSELPDGSVDRAV-----LDMLAPWEVLDAVSRLLVAGGVLMVYVAT 202
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 53.2 bits (127), Expect = 1e-08
Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 8/111 (7%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQ--GITLSPVQAQRANALAAARGLADKVSFQV 214
K ++D G G G LA+ G+ + A+ A + GL ++V+ +V
Sbjct: 102 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKV 161
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265
D + F + D ++ +PD ++ + G V
Sbjct: 162 RDI-SEGFDEKDVDALF-----LDVPDPWNYIDKCWEALKGGGRFATVCPT 206
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.9 bits (126), Expect = 2e-08
Identities = 40/211 (18%), Positives = 64/211 (30%), Gaps = 22/211 (10%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
+ K V+DVG G G + AK K GI S + A + A L V+ G
Sbjct: 32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGK 90
Query: 217 ALQQPFPDGQFDLVWSMESGEHM---PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSE 273
+ P + D++ S G + + + + AP +I + E
Sbjct: 91 VEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAP-DGLIFPDRATLYVTAIE 149
Query: 274 ------ESLQPWEQEL---LKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVA 324
+ WE + I D D +L+ + L IK D
Sbjct: 150 DRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACL--IKEVDIY---- 203
Query: 325 PFWPAVIHSALTWKGFTSLLRTGKLSILCCW 355
V T + R + L +
Sbjct: 204 --TVKVEDLTFTSPFCLQVKRNDYVHALVAY 232
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (125), Expect = 3e-08
Identities = 20/119 (16%), Positives = 30/119 (25%), Gaps = 19/119 (15%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRA----------NALAAAR 204
V++ G G GG S +L+K G + + A L+
Sbjct: 97 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVE 156
Query: 205 GLADKVSFQVGDALQQP--FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261
D V F D FD V M + + G +
Sbjct: 157 EWPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAV 210
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 51.9 bits (123), Expect = 3e-08
Identities = 41/182 (22%), Positives = 63/182 (34%), Gaps = 18/182 (9%)
Query: 149 AGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLA 207
A + E + V+D+GCG G + A G+ +S V + A
Sbjct: 75 AQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKA------AAKRY 128
Query: 208 DKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHR 267
+V+F V + + PF D D + + + ELARV P G +I T R
Sbjct: 129 PQVTFCVASSHRLPFSDTSMDAIIRIYAPCKA-------EELARVVKPGGWVITATPGPR 181
Query: 268 DLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFW 327
L E E+ A L + + +L + L +A Q W
Sbjct: 182 HL---MELKGLIYNEVHLHAPHAEQLEGF-TLQQSAELCYPMRLRGDEAVALLQMTPFAW 237
Query: 328 PA 329
A
Sbjct: 238 RA 239
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 50.9 bits (121), Expect = 5e-08
Identities = 17/139 (12%), Positives = 36/139 (25%), Gaps = 5/139 (3%)
Query: 148 FAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGL 206
G+ P KR ++ +G G + ++A I +P + A R
Sbjct: 64 IKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAEREN 123
Query: 207 ADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW-- 264
+ Q + + + E + G +I
Sbjct: 124 IIPILGDANK--PQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKAR 181
Query: 265 CHRDLAPSEESLQPWEQEL 283
+E + ++ L
Sbjct: 182 SIDVTKDPKEIFKEQKEIL 200
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 50.7 bits (120), Expect = 7e-08
Identities = 32/208 (15%), Positives = 60/208 (28%), Gaps = 25/208 (12%)
Query: 91 AARELKEGIAEFYDESSSLWEDIWG--DHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRF 148
+L + +Y ++ W + + G V D IE + F
Sbjct: 38 LTGDLYDPEKGWYGKALEYWRTVPATVSGVLGGM----DHVHDVD--------IEGSRNF 85
Query: 149 AGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD 208
++ P +D G GIG ++ L K A + + A
Sbjct: 86 --IASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAK---RELAGMP 140
Query: 209 KVSFQVGDALQQPFPDGQFDLVWSMESGEHM--PDKSKFVSELARVTAPAGTIIIVTWCH 266
F + P +DL+ + ++ D KF + P G I C
Sbjct: 141 VGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCS 200
Query: 267 RD----LAPSEESLQPWEQELLKKICDA 290
+ + SL + + ++
Sbjct: 201 TGDRFLVDKEDSSLTRSDIHYKRLFNES 228
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 49.3 bits (116), Expect = 1e-07
Identities = 16/154 (10%), Positives = 35/154 (22%), Gaps = 20/154 (12%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKV------ 210
V+ CG +L+ + G G LS +R +
Sbjct: 19 VPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVY 77
Query: 211 ------SFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIV 262
+ G + + +P ++V L + A + +++
Sbjct: 78 AAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 137
Query: 263 TWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW 296
T + + W
Sbjct: 138 TLEYDQALLEGPPFSVPQTW-----LHRVMSGNW 166
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 49.7 bits (117), Expect = 2e-07
Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 20/165 (12%)
Query: 101 EFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPK 160
E Y + ++ I+ + + A++ +EE + ED + +
Sbjct: 3 ELYTLLAEYYDTIYRRRI--------------ERVKAEIDFVEEIFK-----EDAKREVR 43
Query: 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220
V+D+ CG G + + G + G+ L + A A R L + +
Sbjct: 44 RVLDLACGTGIPTLE-LAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF 102
Query: 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265
+ +S D K S++A P G I C
Sbjct: 103 KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 48.0 bits (113), Expect = 6e-07
Identities = 36/221 (16%), Positives = 64/221 (28%), Gaps = 12/221 (5%)
Query: 111 EDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIG 170
W D + S + + E ++V+DVG G G
Sbjct: 42 RPFWEDLSAD----VALADSFDALMSCDEDLAYEAP----ADAYDWSAVRHVLDVGGGNG 93
Query: 171 GSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLV 230
G +A + + A+RA A GLAD+V+ GD + L+
Sbjct: 94 GMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLL 153
Query: 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA 290
+ D + R P G ++++ + + LL
Sbjct: 154 SFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRAD----VEGDGADRFFSTLLDLRMLT 209
Query: 291 YYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVI 331
+ + + V L S L PF +++
Sbjct: 210 FMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSIL 250
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 47.3 bits (111), Expect = 8e-07
Identities = 22/246 (8%), Positives = 57/246 (23%), Gaps = 23/246 (9%)
Query: 102 FYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKN 161
Y++ + +++ + + + I E + +
Sbjct: 2 CYNKFAHIYDKLIRADVDY---------------KKWSDFIIEKCVENNLV------FDD 40
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221
+D+ CG G + L KF + ++ N + + +
Sbjct: 41 YLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINR 100
Query: 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ 281
D + S D K+ ++ G I + L+ +
Sbjct: 101 KFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYD 160
Query: 282 ELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTWKGFT 341
+ + ++ E+ + + I L
Sbjct: 161 DDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEER--AYKEEDIEKYLKHGQLN 218
Query: 342 SLLRTG 347
L +
Sbjct: 219 ILDKVD 224
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 45.5 bits (107), Expect = 3e-06
Identities = 16/140 (11%), Positives = 38/140 (27%), Gaps = 6/140 (4%)
Query: 150 GVSEDPTKRPKNVVDVGCGIGGSSRYLAK-KFGAKCQGITLSPVQAQRANALAAARGLAD 208
+ + V+ +G G + +LA + S ++ L R
Sbjct: 48 KGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN--- 104
Query: 209 KVSFQVGDALQQPFPDGQFDLVWSMESGEHMP-DKSKFVSELARVTAPAGTIIIVTW-CH 266
+ + DA + G + V + + G ++I+
Sbjct: 105 NIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARS 164
Query: 267 RDLAPSEESLQPWEQELLKK 286
D E + + ++
Sbjct: 165 IDSTAEPEEVFKSVLKEMEG 184
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 45.1 bits (105), Expect = 5e-06
Identities = 39/185 (21%), Positives = 71/185 (38%), Gaps = 11/185 (5%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
K+ V+D+ CG+GG S L + + + + A A+ V F VGD
Sbjct: 36 KKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRESNVEFIVGD 92
Query: 217 ALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAP-SE 273
A + F D FD V ++S H + ++ E+ RV P+G I+ R+L P +
Sbjct: 93 ARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLK 152
Query: 274 ESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHS 333
ESL ++ + K +P ++ ++ W + + +
Sbjct: 153 ESLVVGQKYWISK-----VIPDQEERTVVIEFKSEQDSFRVRFNVWGKTGVELLAKLYFT 207
Query: 334 ALTWK 338
+
Sbjct: 208 KEAEE 212
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 1e-05
Identities = 34/203 (16%), Positives = 67/203 (33%), Gaps = 15/203 (7%)
Query: 94 ELKEGIAEFYDESSSLWEDIWG--DHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGV 151
E+ E +FY ++ + W+ I D M G+ +S D +++ +
Sbjct: 3 EVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGH----ISSIDINSSRKFLQRFLREGPN- 57
Query: 152 SEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVS 211
+D G GIG ++ L + + ++ +A G +
Sbjct: 58 ----KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNY 113
Query: 212 FQVGDALQQPFPD-GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD-- 268
F G P PD + + ++F+ P G I+I ++
Sbjct: 114 FCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGV 173
Query: 269 -LAPSEESLQPWEQELLKKICDA 290
L + S+ + + IC A
Sbjct: 174 ILDDVDSSVCRDLDVVRRIICSA 196
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 43.5 bits (101), Expect = 1e-05
Identities = 34/224 (15%), Positives = 69/224 (30%), Gaps = 13/224 (5%)
Query: 111 EDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIG 170
+ + D PD S A + + + ++V+DVG G G
Sbjct: 41 KPFYEDLAGR----PDLRASFDSLLACDQDVAFDAP----AAAYDWTNVRHVLDVGGGKG 92
Query: 171 GSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLV 230
G + +A++ + A + GL+D+V GD + ++
Sbjct: 93 GFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIIL 152
Query: 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA 290
+ D + ++ A P G I+I + E+ + L
Sbjct: 153 SFVLLNWPDHDAVRILTRCAEALEPGGRILIH-----ERDDLHENSFNEQFTELDLRMLV 207
Query: 291 YYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSA 334
+ A + + L S L + P+ +++ A
Sbjct: 208 FLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLA 251
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Score = 41.4 bits (96), Expect = 6e-05
Identities = 24/112 (21%), Positives = 36/112 (32%), Gaps = 10/112 (8%)
Query: 162 VVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQ 219
V+VG G G +AK+ GI + A G+ + V G L
Sbjct: 35 HVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLT 94
Query: 220 QPFPDGQFDLVWSMESGEHMPDKS--------KFVSELARVTAPAGTIIIVT 263
F DG+ D ++ S + F+ R+ G I T
Sbjct: 95 DYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Score = 41.4 bits (96), Expect = 8e-05
Identities = 30/173 (17%), Positives = 54/173 (31%), Gaps = 7/173 (4%)
Query: 117 HMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYL 176
H + + + + A E T + V+D+G G G +
Sbjct: 79 APWHTWEGAEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAA 138
Query: 177 AKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236
K G K G+ + P+ +A A A G+ + F G + P G FDL+ +
Sbjct: 139 EKL-GGKALGVDIDPMVLPQAEANAKRNGVRPR--FLEGSL-EAALPFGPFDLLVANLYA 194
Query: 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD 289
E P G ++ E++ L++ +
Sbjct: 195 ELHAA---LAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAE 244
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Score = 40.6 bits (94), Expect = 1e-04
Identities = 21/112 (18%), Positives = 33/112 (29%), Gaps = 10/112 (8%)
Query: 162 VVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQ 219
++VG G G +AK+ GI L A + + D L
Sbjct: 33 HIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT 92
Query: 220 QPFPDGQFDLVWSMESGEHMPDKS--------KFVSELARVTAPAGTIIIVT 263
F G+ V+ S + F+ + V G+I T
Sbjct: 93 DVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 38.9 bits (90), Expect = 4e-04
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 160 KNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219
++V+D G G G + + P +A+ A+ V+F V D +
Sbjct: 50 RSVIDAGTGNGILACGSYLLGAESVTAFDIDP------DAIETAKRNCGGVNFMVADVSE 103
Query: 220 QPFPDGQFDLVWS 232
G++D
Sbjct: 104 ---ISGKYDTWIM 113
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (87), Expect = 0.001
Identities = 16/159 (10%), Positives = 38/159 (23%), Gaps = 25/159 (15%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL---------- 206
K V CG ++ A G G+ +S + Q
Sbjct: 44 KSGLRVFFPLCGKAVEMKWFA-DRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGT 102
Query: 207 ------ADKVSFQVGDALQQ-PFPDGQFDLVWSMESGEHM--PDKSKFVSELARVTAPAG 257
+ +S G+FD++W + + D+ + + +
Sbjct: 103 KVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKF 162
Query: 258 TIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW 296
++ + E+ + +
Sbjct: 163 QYLLCVLSYDPTKHPGPPFYVPHAEI-----ERLFGKIC 196
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 379 | |||
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.98 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.97 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.97 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.96 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.95 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.94 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.92 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.9 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.89 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.88 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.88 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.87 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.86 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.85 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.84 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.84 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.84 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.83 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.83 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.82 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.79 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.79 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.79 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.78 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.77 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.77 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.77 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.76 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.74 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.74 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.74 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.73 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.72 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.71 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.7 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.7 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.7 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.66 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.64 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.61 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.61 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.61 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.6 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.59 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.57 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.57 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.56 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.55 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.55 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.54 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.52 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.51 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.5 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.47 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.44 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.41 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.37 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.34 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.34 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.32 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.29 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.22 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.21 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.19 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.17 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.16 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.16 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.12 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.11 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.1 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.07 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.01 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.97 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.83 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.81 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.79 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.72 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.66 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.65 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.64 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.64 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.57 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.57 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.57 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.53 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.52 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.5 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.47 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.46 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.46 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.43 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.36 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.25 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.19 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.15 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.11 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.11 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.11 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.82 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.73 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.66 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.57 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.37 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.2 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.06 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.06 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.05 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.02 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.0 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.94 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.88 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.82 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.64 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.58 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.57 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.52 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.5 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.48 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 96.35 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 96.31 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 95.94 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.68 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 95.54 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.54 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.51 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 95.2 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.19 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 95.17 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 95.08 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.01 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.0 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.52 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 94.34 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 94.24 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 94.12 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 93.91 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.66 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 93.51 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 93.37 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 93.36 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 93.32 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 92.52 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 92.51 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 92.04 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 91.84 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 90.82 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 90.7 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 90.02 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 89.59 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 89.46 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 89.46 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 89.09 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 88.36 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 88.26 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 87.85 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 87.46 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 87.13 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 86.72 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 86.72 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 86.65 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 86.21 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 86.13 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 86.04 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 85.83 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 85.32 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 85.02 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 84.82 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 84.55 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 84.03 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 83.73 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 83.54 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 83.44 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 82.86 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 81.93 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 81.8 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 81.36 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 80.9 |
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.98 E-value=1.4e-31 Score=244.01 Aligned_cols=219 Identities=27% Similarity=0.481 Sum_probs=172.8
Q ss_pred HHHHHHHHHHcc--CchhHHHhh-hccccccccCCCCCCCcchHHHHHHHHHHH----HHHHcCCCCCCCCCCCEEEEeC
Q 016981 94 ELKEGIAEFYDE--SSSLWEDIW-GDHMHHGFYEPDSSVSVSDHRAAQVRMIEE----TLRFAGVSEDPTKRPKNVVDVG 166 (379)
Q Consensus 94 ~~~~~i~~~yd~--~~~~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~vLDiG 166 (379)
...+.+..|||. ...+|...| ++++|.|||..+.... ....+..+..+. +....++.+ +.+|||||
T Consensus 3 ~~~~~~~~~y~~~~~~~fy~~~w~g~~~h~G~~~~~~~~~--~~~~a~~~~~~~~~~~l~~~~~l~~-----~~~vLDiG 75 (282)
T d2o57a1 3 TVKDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQD--EIREASLRTDEWLASELAMTGVLQR-----QAKGLDLG 75 (282)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHTTSCCCSCCCCSSGGGS--CHHHHHHHHHHHHHHHHHHTTCCCT-----TCEEEEET
T ss_pred hHHHHHHHhcCCchhHHHHHHHcCCCCceeeecCCCCCCc--CHHHHHHHHHHHHHHHHHHhcCCCC-----CCEEEEeC
Confidence 566778899998 568898988 5789999998765432 234444444443 334444544 89999999
Q ss_pred CcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCHHHHH
Q 016981 167 CGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFV 246 (379)
Q Consensus 167 cGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l 246 (379)
||+|.++..++++++++|+|+|+|+.|++.|+++....|+.+++.|.++|+.++|+++++||+|++..+++|++++..++
T Consensus 76 cG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~h~~d~~~~l 155 (282)
T d2o57a1 76 AGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVF 155 (282)
T ss_dssp CTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHHHH
T ss_pred CCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccchhhhccCHHHHH
Confidence 99999999999887889999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEecCCCcccc
Q 016981 247 SELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPF 326 (379)
Q Consensus 247 ~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~ 326 (379)
++++++|||||++++.++...+.... ..+. .+.. ....+.+.+.+++.++++++||+++.+.+....+..+
T Consensus 156 ~~~~~~LkpgG~l~~~~~~~~~~~~~-~~~~----~~~~----~~~~~~~~s~~~~~~~l~~~Gf~~i~~~d~~~~~~~~ 226 (282)
T d2o57a1 156 QECARVLKPRGVMAITDPMKEDGIDK-SSIQ----PILD----RIKLHDMGSLGLYRSLAKECGLVTLRTFSRPDSLVHH 226 (282)
T ss_dssp HHHHHHEEEEEEEEEEEEEECTTCCG-GGGH----HHHH----HHTCSSCCCHHHHHHHHHHTTEEEEEEEECHHHHHHH
T ss_pred HHHHHhcCCCcEEEEEEeecCCCCch-hHHH----HHHH----HhccCCCCCHHHHHHHHHHcCCceEEEEECcHhHHHH
Confidence 99999999999999998765543221 1111 1222 1223345689999999999999999988776555443
Q ss_pred hH
Q 016981 327 WP 328 (379)
Q Consensus 327 ~~ 328 (379)
+.
T Consensus 227 ~~ 228 (282)
T d2o57a1 227 YS 228 (282)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.97 E-value=3.7e-29 Score=227.02 Aligned_cols=221 Identities=18% Similarity=0.200 Sum_probs=178.1
Q ss_pred HHHHHHHccCchhHHHhhhccccc--cccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHH
Q 016981 97 EGIAEFYDESSSLWEDIWGDHMHH--GFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSR 174 (379)
Q Consensus 97 ~~i~~~yd~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~ 174 (379)
+.|..|||..+++|+.++++++++ +||..+... +.+++.++++.+++.+++.+ +.+|||||||.|.++.
T Consensus 7 ~~i~~HYD~~~~fy~~~Lg~~~~YS~~~~~~~~~t----L~~Aq~~k~~~~~~~l~l~~-----G~~VLDiGCG~G~~~~ 77 (291)
T d1kpia_ 7 EAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMT----LEEAQYAKRKLALDKLNLEP-----GMTLLDIGCGWGSTMR 77 (291)
T ss_dssp HHHHHHHTSCHHHHHHHSCTTCCCSCCCCSSTTCC----HHHHHHHHHHHHHHTTCCCT-----TCEEEEETCTTSHHHH
T ss_pred hHHHHhcCCCHHHHHHhcCCCCCeeeEEecCCCCC----HHHHHHHHHHHHHHhcCCCC-----CCEEEEecCcchHHHH
Confidence 569999999999999988998865 899876533 78999999999999999887 9999999999999999
Q ss_pred HHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCC---------HHHH
Q 016981 175 YLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD---------KSKF 245 (379)
Q Consensus 175 ~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~---------~~~~ 245 (379)
.+++++|++|+|+++|+.+++.+++++...++..++.+...|.. +.+++||.|++..+++|+.+ ...+
T Consensus 78 ~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~---~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~ 154 (291)
T d1kpia_ 78 HAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE---EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTF 154 (291)
T ss_dssp HHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG---GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHH
T ss_pred HHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc---ccccccceEeechhHHhcchhhhhhHHHHHHHH
Confidence 99988899999999999999999999999999888999888864 34689999999999999976 4799
Q ss_pred HHHHHHhcCCCCEEEEEeccCCCCCCCcc--c-cc---hHHHHHHH-HHhhccCCCCCCCHHHHHHHHHhCCCceeEEEe
Q 016981 246 VSELARVTAPAGTIIIVTWCHRDLAPSEE--S-LQ---PWEQELLK-KICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 246 l~~~~r~LkpgG~l~i~~~~~~~~~~~~~--~-~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 318 (379)
+++++++|||||++++.+++..+...... . .. .....++. .+.+...+| +..++...++++||+++++++
T Consensus 155 f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg~lp---s~~~~~~~~e~~gl~v~~~~~ 231 (291)
T d1kpia_ 155 FKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLP---RISQVDYYSSNAGWKVERYHR 231 (291)
T ss_dssp HHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCC---CHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCCCCC---CHHHHHhhhcccccccceeee
Confidence 99999999999999999887543211000 0 00 00111222 233444444 899999999999999999998
Q ss_pred cCCCcccchHHHHH
Q 016981 319 WSQNVAPFWPAVIH 332 (379)
Q Consensus 319 ~~~~~~~~~~~~~~ 332 (379)
+..++......+.+
T Consensus 232 ~~~hYa~TL~~W~~ 245 (291)
T d1kpia_ 232 IGANYVPTLNAWAD 245 (291)
T ss_dssp CGGGHHHHHHHHHH
T ss_pred ccccHHHHHHHHHH
Confidence 88777655444443
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.97 E-value=2.8e-29 Score=227.11 Aligned_cols=220 Identities=19% Similarity=0.204 Sum_probs=177.5
Q ss_pred HHHHHHHHccCchhHHHhhhccccc--cccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHH
Q 016981 96 KEGIAEFYDESSSLWEDIWGDHMHH--GFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSS 173 (379)
Q Consensus 96 ~~~i~~~yd~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~ 173 (379)
.++|+.|||..+++|..++++.+++ +||..+... ..+++.++++.+++.+++++ +.+|||||||.|.++
T Consensus 7 ~~~i~~HYD~~~~fy~~~Lg~~~~YS~g~~~~~~~t----L~eAQ~~k~~~~~~~l~l~~-----G~~VLDiGCG~G~~a 77 (285)
T d1kpga_ 7 FANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMT----LQEAQIAKIDLALGKLGLQP-----GMTLLDVGCGWGATM 77 (285)
T ss_dssp HHHHHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTCC----HHHHHHHHHHHHHTTTTCCT-----TCEEEEETCTTSHHH
T ss_pred HHHHHHhcCCcHHHHHHhCCCCCcEeeEEeCCCCCC----HHHHHHHHHHHHHHHcCCCC-----CCEEEEecCcchHHH
Confidence 3579999999999999999998886 899875533 78999999999999999876 999999999999999
Q ss_pred HHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC--CHHHHHHHHHH
Q 016981 174 RYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELAR 251 (379)
Q Consensus 174 ~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~r 251 (379)
..+++.+|++|+|+++|+.+++.|+++.+..|+.+++++..+|+.+++ ++||.|++..+++|+. +...+++++++
T Consensus 78 ~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r 154 (285)
T d1kpga_ 78 MRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHR 154 (285)
T ss_dssp HHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHH
T ss_pred HHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---ccccceeeehhhhhcCchhHHHHHHHHHh
Confidence 999998899999999999999999999999999899999999987764 6899999999999995 45899999999
Q ss_pred hcCCCCEEEEEeccCCCCCCCcc---ccc---hHHHHHHH-HHhhccCCCCCCCHHHHHHHHHhCCCceeEEEecCCCcc
Q 016981 252 VTAPAGTIIIVTWCHRDLAPSEE---SLQ---PWEQELLK-KICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVA 324 (379)
Q Consensus 252 ~LkpgG~l~i~~~~~~~~~~~~~---~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~ 324 (379)
+|||||++++.+++......... ... .....++. .+.+...+| +..++..+++++||++++++++..++.
T Consensus 155 ~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lP---sl~~~~~~~e~agf~v~~~~~~~~hYa 231 (285)
T d1kpga_ 155 LLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLP---SIPMVQECASANGFTVTRVQSLQPHYA 231 (285)
T ss_dssp HSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCC---CHHHHHHHHHTTTCEEEEEEECHHHHH
T ss_pred hcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCC---ChhhHHHHHHHhchhhcccccchhhHH
Confidence 99999999998876432110000 000 11112222 233444444 899999999999999999988876665
Q ss_pred cchHHH
Q 016981 325 PFWPAV 330 (379)
Q Consensus 325 ~~~~~~ 330 (379)
.....+
T Consensus 232 rTl~~W 237 (285)
T d1kpga_ 232 KTLDLW 237 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 443333
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.96 E-value=1.1e-28 Score=223.22 Aligned_cols=210 Identities=17% Similarity=0.198 Sum_probs=168.0
Q ss_pred HHHccCchhHHHhhhccccc--cccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHH
Q 016981 101 EFYDESSSLWEDIWGDHMHH--GFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAK 178 (379)
Q Consensus 101 ~~yd~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~ 178 (379)
.|||..+++|+.++++++++ +||..+... ..+++.++++.+++.+++.+ +.+|||||||+|.++..+++
T Consensus 2 aHYD~~~~fy~~~ld~~m~YS~~~~~~~~~t----L~~AQ~~k~~~~~~~l~l~~-----g~~VLDiGCG~G~~a~~~a~ 72 (280)
T d2fk8a1 2 AHYDVSDDFFALFQDPTRTYSCAYFEPPELT----LEEAQYAKVDLNLDKLDLKP-----GMTLLDIGCGWGTTMRRAVE 72 (280)
T ss_dssp GGGCCCHHHHTTTSCTTCCCSCCCCSSTTCC----HHHHHHHHHHHHHTTSCCCT-----TCEEEEESCTTSHHHHHHHH
T ss_pred CCccCcHHHHHHhCCCCCcEeeEEeCCCCCC----HHHHHHHHHHHHHHHcCCCC-----CCEEEEecCCchHHHHHHHH
Confidence 68999999999999998886 899876532 78899999999999998876 99999999999999999998
Q ss_pred HcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCC
Q 016981 179 KFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPA 256 (379)
Q Consensus 179 ~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~Lkpg 256 (379)
..|++|+|+|+|+.+++.|+++++..++..++.+...|..+. +++||.|++..+++|+.+. ..++++++++||||
T Consensus 73 ~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lkpg 149 (280)
T d2fk8a1 73 RFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD 149 (280)
T ss_dssp HHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT
T ss_pred hCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCC
Confidence 888999999999999999999999999888888888887665 4789999999999999654 89999999999999
Q ss_pred CEEEEEeccCCCCCCCccc---cc---hHHHHHHHH-HhhccCCCCCCCHHHHHHHHHhCCCceeEEEecCCCccc
Q 016981 257 GTIIIVTWCHRDLAPSEES---LQ---PWEQELLKK-ICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAP 325 (379)
Q Consensus 257 G~l~i~~~~~~~~~~~~~~---~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~ 325 (379)
|++++.+............ .. .....++.+ +.+...+| +.+++.+.++++||++++++++..+...
T Consensus 150 G~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lP---S~~~l~~~~e~aGf~v~~~~~~~~hYa~ 222 (280)
T d2fk8a1 150 GRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLP---STEMMVEHGEKAGFTVPEPLSLRPHYIK 222 (280)
T ss_dssp CEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCC---CHHHHHHHHHHTTCBCCCCEECHHHHHH
T ss_pred ceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCccc---chHhhhhhHHhhccccceeeecccCHHH
Confidence 9999987544321110000 00 001122222 33333433 8999999999999999998877655433
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.95 E-value=4.3e-27 Score=207.53 Aligned_cols=167 Identities=23% Similarity=0.313 Sum_probs=135.4
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC
Q 016981 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (379)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 221 (379)
+.++++.+++.+ +.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++...+. +++.|.++|++++|
T Consensus 4 ~~~ll~~~~l~~-----~~rVLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~i~~A~~~~~~~~~-~~i~~~~~d~~~l~ 76 (231)
T d1vl5a_ 4 LAKLMQIAALKG-----NEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMP 76 (231)
T ss_dssp HHHHHHHHTCCS-----CCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCC
T ss_pred HHHHHHhcCCCC-----cCEEEEecccCcHHHHHHHHh-CCEEEEEECCHHHHhhhhhccccccc-cccccccccccccc
Confidence 456777778776 899999999999999999987 68999999999999999999988876 58999999999999
Q ss_pred CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHH
Q 016981 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (379)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (379)
+++++||+|++..+++|++|+..++++++++|||||++++.++..+.. ..+ ..............+ ...++.++
T Consensus 77 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~----~~~-~~~~~~~~~~~~~~~-~~~~~~~~ 150 (231)
T d1vl5a_ 77 FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPEN----DAF-DVFYNYVEKERDYSH-HRAWKKSD 150 (231)
T ss_dssp SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSS----HHH-HHHHHHHHHHHCTTC-CCCCBHHH
T ss_pred ccccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCC----HHH-HHHHHHHHhhcccCc-ccCCCHHH
Confidence 999999999999999999999999999999999999999988654321 111 111122222222222 24668999
Q ss_pred HHHHHHhCCCceeEEEecCC
Q 016981 302 YVKLLQSLSLEDIKAEDWSQ 321 (379)
Q Consensus 302 ~~~~l~~aGF~~v~~~~~~~ 321 (379)
+.++|+++||+++++..+..
T Consensus 151 ~~~~l~~aGf~~~~~~~~~~ 170 (231)
T d1vl5a_ 151 WLKMLEEAGFELEELHCFHK 170 (231)
T ss_dssp HHHHHHHHTCEEEEEEEEEE
T ss_pred HHHHHHHCCCEEEEEEEeec
Confidence 99999999999988776643
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.94 E-value=6.4e-26 Score=200.52 Aligned_cols=170 Identities=22% Similarity=0.396 Sum_probs=136.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
.++-+++.+++++ +.+|||||||+|.++..++++ +.+|+|+|+|+.|++.|++++...++ +++.++++|++++
T Consensus 4 ~~~~l~~~~~~~~-----~~rILDiGcGtG~~~~~la~~-~~~v~gvD~S~~~l~~A~~~~~~~~~-~~~~~~~~d~~~~ 76 (234)
T d1xxla_ 4 SLGLMIKTAECRA-----EHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESL 76 (234)
T ss_dssp HHHHHHHHHTCCT-----TCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBC
T ss_pred HHHHHHHHhCCCC-----CCEEEEeCCcCcHHHHHHHHh-CCeEEEEeCChhhhhhhhhhhccccc-ccccccccccccc
Confidence 3445667777776 999999999999999999987 67999999999999999999998887 5899999999999
Q ss_pred CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (379)
|+++++||+|++.++++|++|+..++++++++|||||++++.++..+.. ..+..+. ..+.......+. ...+..
T Consensus 77 ~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~-~~~~~~ 150 (234)
T d1xxla_ 77 PFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPED----PVLDEFV-NHLNRLRDPSHV-RESSLS 150 (234)
T ss_dssp CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSS----HHHHHHH-HHHHHHHCTTCC-CCCBHH
T ss_pred cccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCCC----HHHHHHH-HHHHhhCCCccc-ccCCHH
Confidence 9999999999999999999999999999999999999999988654321 1112222 122222222222 345889
Q ss_pred HHHHHHHhCCCceeEEEecCCCc
Q 016981 301 DYVKLLQSLSLEDIKAEDWSQNV 323 (379)
Q Consensus 301 ~~~~~l~~aGF~~v~~~~~~~~~ 323 (379)
++..+++++||....+..+..+.
T Consensus 151 ~~~~~~~~~gf~~~~~~~~~~~~ 173 (234)
T d1xxla_ 151 EWQAMFSANQLAYQDIQKWNLPI 173 (234)
T ss_dssp HHHHHHHHTTEEEEEEEEEEEEE
T ss_pred HHHHHHHHCCCceeEEEEeeCcc
Confidence 99999999999888777665443
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=9e-25 Score=194.43 Aligned_cols=164 Identities=18% Similarity=0.208 Sum_probs=134.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
.+..+.+.+++.+ +.+|||||||+|.++..+++..+++|+|+|+|+.|++.|+++....|+.++++|.++|+.++
T Consensus 21 ~~~~l~~~~~l~p-----g~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~ 95 (245)
T d1nkva_ 21 KYATLGRVLRMKP-----GTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY 95 (245)
T ss_dssp HHHHHHHHTCCCT-----TCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred HHHHHHHHcCCCC-----CCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence 5666777777776 99999999999999999998878899999999999999999999999988899999999987
Q ss_pred CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (379)
+++++||+|++..+++|++|+..++++++++|||||++++.+......... ..............+.+..
T Consensus 96 -~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 165 (245)
T d1nkva_ 96 -VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPAT---------EEIAQACGVSSTSDFLTLP 165 (245)
T ss_dssp -CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSS---------HHHHHTTTCSCGGGSCCHH
T ss_pred -cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCCh---------HHHHHHhccCCCcccCCHH
Confidence 457899999999999999999999999999999999999988654332111 1112222222222356889
Q ss_pred HHHHHHHhCCCceeEEEec
Q 016981 301 DYVKLLQSLSLEDIKAEDW 319 (379)
Q Consensus 301 ~~~~~l~~aGF~~v~~~~~ 319 (379)
++...++++||+++.....
T Consensus 166 ~~~~~~~~aG~~~v~~~~~ 184 (245)
T d1nkva_ 166 GLVGAFDDLGYDVVEMVLA 184 (245)
T ss_dssp HHHHHHHTTTBCCCEEEEC
T ss_pred HHHHHHHHcCCEEEEEEeC
Confidence 9999999999998877544
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=1.5e-23 Score=181.58 Aligned_cols=137 Identities=20% Similarity=0.209 Sum_probs=110.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
..+|||||||+|.++..+. +++|+|+|+.|++.|+++ ++.+.++|++++++++++||+|++..+++|
T Consensus 37 ~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h 103 (208)
T d1vlma_ 37 EGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTICF 103 (208)
T ss_dssp SSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred CCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc--------cccccccccccccccccccccccccccccc
Confidence 5689999999999887663 468999999999999873 689999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc---CCCCCCCHHHHHHHHHhCCCceeE
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY---YLPAWCSTADYVKLLQSLSLEDIK 315 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~aGF~~v~ 315 (379)
++|+..++++++++|||||.+++.++.... ............. ....+++.+++.++|+++||++++
T Consensus 104 ~~d~~~~l~~~~~~L~pgG~l~i~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~ 173 (208)
T d1vlma_ 104 VDDPERALKEAYRILKKGGYLIVGIVDRES----------FLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK 173 (208)
T ss_dssp SSCHHHHHHHHHHHEEEEEEEEEEEECSSS----------HHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred ccccccchhhhhhcCCCCceEEEEecCCcc----------hhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEE
Confidence 999999999999999999999998864322 1111222211111 112467999999999999999988
Q ss_pred EEe
Q 016981 316 AED 318 (379)
Q Consensus 316 ~~~ 318 (379)
+..
T Consensus 174 v~~ 176 (208)
T d1vlma_ 174 VVQ 176 (208)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=4.7e-23 Score=180.41 Aligned_cols=144 Identities=15% Similarity=0.169 Sum_probs=119.0
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
++.+|||||||+|.++..++...+.+|+|+|+|+.|++.|++++...+. .+++|.++|++++++++++||+|++..+++
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~ 138 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 138 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc-cccccccccccccccccccccccccccccc
Confidence 4789999999999999998776667999999999999999999887665 478999999999988889999999999999
Q ss_pred CCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeE
Q 016981 238 HMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (379)
Q Consensus 238 ~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 315 (379)
|++++ ..++++++++|||||.+++.+........ +. .......++.++++++++++||++++
T Consensus 139 h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~----~~------------~~~~~~~~~~~~~~~l~~~aGf~ii~ 202 (222)
T d2ex4a1 139 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI----LD------------DVDSSVCRDLDVVRRIICSAGLSLLA 202 (222)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEE----EE------------TTTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred cchhhhhhhHHHHHHHhcCCcceEEEEEcccccccc----cc------------cCCceeeCCHHHHHHHHHHcCCEEEE
Confidence 99876 58999999999999999999865443211 00 00000124789999999999999998
Q ss_pred EEe
Q 016981 316 AED 318 (379)
Q Consensus 316 ~~~ 318 (379)
.+.
T Consensus 203 ~~~ 205 (222)
T d2ex4a1 203 EER 205 (222)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.88 E-value=2e-22 Score=179.78 Aligned_cols=156 Identities=16% Similarity=0.142 Sum_probs=122.7
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
.....+++.+.... ..+|||+|||+|.++..++..+..+|+++|+|+.|++.|++++... ++++|.++|+++
T Consensus 80 ~~s~~fl~~l~~~~-----~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~ 151 (254)
T d1xtpa_ 80 EGSRNFIASLPGHG-----TSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMET 151 (254)
T ss_dssp HHHHHHHHTSTTCC-----CSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGG
T ss_pred HHHHHHHhhCCCCC-----CCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---ccceeEEccccc
Confidence 44556666665443 7899999999999999988776679999999999999999887532 468999999999
Q ss_pred CCCCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016981 220 QPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (379)
+++++++||+|++..+++|+++. .++|++++++|||||.+++.+............. ... ...
T Consensus 152 ~~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~-----------d~~----~~r 216 (254)
T d1xtpa_ 152 ATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKE-----------DSS----LTR 216 (254)
T ss_dssp CCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETT-----------TTE----EEB
T ss_pred cccCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceeccc-----------CCc----eeC
Confidence 98888999999999999999876 4889999999999999999886543221110000 000 124
Q ss_pred CHHHHHHHHHhCCCceeEEEe
Q 016981 298 STADYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 298 ~~~~~~~~l~~aGF~~v~~~~ 318 (379)
+.++++++++++||++++.+.
T Consensus 217 s~~~~~~l~~~aGf~ii~~~~ 237 (254)
T d1xtpa_ 217 SDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp CHHHHHHHHHHHTCCEEEEEE
T ss_pred CHHHHHHHHHHcCCEEEEEEe
Confidence 789999999999999998764
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.88 E-value=5.8e-22 Score=176.85 Aligned_cols=171 Identities=18% Similarity=0.213 Sum_probs=130.6
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
...+++.++... ..+|||||||+|.++..+++++ +.+++++|+ +.+++.+++++...++.++++++.+|+.+.
T Consensus 69 ~~~~~~~~d~~~-----~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~ 142 (253)
T d1tw3a2 69 FDAPAAAYDWTN-----VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP 142 (253)
T ss_dssp THHHHHHSCCTT-----CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred HHHHHhhcCCcc-----CCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh
Confidence 345666666655 7899999999999999999998 789999998 679999999999999888999999998653
Q ss_pred CCCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHH-HHHHhhccCCCCCC
Q 016981 221 PFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQEL-LKKICDAYYLPAWC 297 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 297 (379)
. ..+||+|++..+++|+++. .++|++++++|||||+|+|.+........ .......+ +.-.....+ ...
T Consensus 143 -~-~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~----~~~~~~~~dl~~~~~~~g--~~r 214 (253)
T d1tw3a2 143 -L-PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENS----FNEQFTELDLRMLVFLGG--ALR 214 (253)
T ss_dssp -C-SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGC----CSHHHHHHHHHHHHHHSC--CCC
T ss_pred -c-ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCc----chhHHHHhhHHHHhhCCC--cCC
Confidence 2 3579999999999999876 47899999999999999999864332111 11111111 010111111 234
Q ss_pred CHHHHHHHHHhCCCceeEEEecCCCcccc
Q 016981 298 STADYVKLLQSLSLEDIKAEDWSQNVAPF 326 (379)
Q Consensus 298 ~~~~~~~~l~~aGF~~v~~~~~~~~~~~~ 326 (379)
+.++|.++|+++||+++++..+..+..++
T Consensus 215 t~~e~~~ll~~AGf~~~~v~~~~~p~~~~ 243 (253)
T d1tw3a2 215 TREKWDGLAASAGLVVEEVRQLPSPTIPY 243 (253)
T ss_dssp BHHHHHHHHHHTTEEEEEEEEEECSSSSC
T ss_pred CHHHHHHHHHHCCCeEEEEEECCCCCCCc
Confidence 89999999999999999998887776663
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.87 E-value=9.4e-22 Score=172.37 Aligned_cols=158 Identities=15% Similarity=0.127 Sum_probs=117.6
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~ 234 (379)
++.+|||+|||+|..+..+++.. +.+|+|+|+|+.|++.|+++.+..+...++.+..+|+.+.+ .+.+|+|++..
T Consensus 39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~--~~~~d~i~~~~ 116 (225)
T d1im8a_ 39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--IKNASMVILNF 116 (225)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC--CCSEEEEEEES
T ss_pred CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc--cccceeeEEee
Confidence 37899999999999999999853 67999999999999999999988776667888888887665 46799999999
Q ss_pred ccCCCC--CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHh-hc----------cCCCCCCCHHH
Q 016981 235 SGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC-DA----------YYLPAWCSTAD 301 (379)
Q Consensus 235 ~l~~~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~~~~~~~~~~ 301 (379)
+++|++ ++.++|++++++|||||.+++.+............+......+..... .. .......+.++
T Consensus 117 ~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 196 (225)
T d1im8a_ 117 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIET 196 (225)
T ss_dssp CGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHHH
T ss_pred eccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHHH
Confidence 999985 678999999999999999999986544321111111111111111000 00 00112358999
Q ss_pred HHHHHHhCCCceeEEE
Q 016981 302 YVKLLQSLSLEDIKAE 317 (379)
Q Consensus 302 ~~~~l~~aGF~~v~~~ 317 (379)
+.++|+++||+.|++.
T Consensus 197 ~~~~L~~aGF~~v~~~ 212 (225)
T d1im8a_ 197 HKVRLKNVGFSQVELW 212 (225)
T ss_dssp HHHHHHHHTCSEEEEE
T ss_pred HHHHHHHcCCCceEEe
Confidence 9999999999998763
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.86 E-value=1e-21 Score=172.19 Aligned_cols=146 Identities=12% Similarity=0.074 Sum_probs=114.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++. ..++.+..+|+++.++ +++||+|++.++++|
T Consensus 21 ~~~VLDiGcG~G~~~~~l~~~-g~~v~giD~s~~~i~~a~~~~-----~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh 93 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRL-----KDGITYIHSRFEDAQL-PRRYDNIVLTHVLEH 93 (225)
T ss_dssp SSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHS-----CSCEEEEESCGGGCCC-SSCEEEEEEESCGGG
T ss_pred CCcEEEEeCCCcHHHHHHHHc-CCeEEEEeCcHHHhhhhhccc-----cccccccccccccccc-ccccccccccceeEe
Confidence 678999999999999999887 679999999999999998764 2579999999988875 588999999999999
Q ss_pred CCCHHHHHHHHH-HhcCCCCEEEEEeccCCCCC----------CCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 016981 239 MPDKSKFVSELA-RVTAPAGTIIIVTWCHRDLA----------PSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQ 307 (379)
Q Consensus 239 ~~~~~~~l~~~~-r~LkpgG~l~i~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 307 (379)
++|+..++.+++ ++|||||.+++..+...... .....+... .........++.++++++++
T Consensus 94 ~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~h~~~~~~~~l~~~l~ 165 (225)
T d2p7ia1 94 IDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEA--------EFAHGHRCTYALDTLERDAS 165 (225)
T ss_dssp CSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHH--------HHHTTCCCCCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCcc--------ccceeeeeccCHHHHHHHHH
Confidence 999999999998 79999999999874322100 000000000 00011123568999999999
Q ss_pred hCCCceeEEEec
Q 016981 308 SLSLEDIKAEDW 319 (379)
Q Consensus 308 ~aGF~~v~~~~~ 319 (379)
++||+++..+.+
T Consensus 166 ~~Gf~i~~~~~~ 177 (225)
T d2p7ia1 166 RAGLQVTYRSGI 177 (225)
T ss_dssp HTTCEEEEEEEE
T ss_pred HCCCEEEEEEEE
Confidence 999999887654
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.85 E-value=3e-21 Score=174.77 Aligned_cols=158 Identities=18% Similarity=0.193 Sum_probs=117.2
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++...+. ++.|.++|+.+++++ ++||+|++..+
T Consensus 27 ~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~~~~-~~fD~v~~~~~ 103 (281)
T d2gh1a1 27 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIELN-DKYDIAICHAF 103 (281)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCCS-SCEEEEEEESC
T ss_pred CcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--ccccccccccccccc-CCceEEEEehh
Confidence 47899999999999999999876 57899999999999999999987653 799999999998875 57999999999
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCC--C-----CCCccccc--hHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD--L-----APSEESLQ--PWEQELLKKICDAYYLPAWCSTADYVKLL 306 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~--~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 306 (379)
++|++++..++++++++|||||++++.+..... . ......+. ......+.......+.. .....++..+|
T Consensus 104 l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~~l 182 (281)
T d2gh1a1 104 LLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKD-GNIGMKIPIYL 182 (281)
T ss_dssp GGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCC-TTGGGTHHHHH
T ss_pred hhcCCCHHHHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Confidence 999999999999999999999999998742100 0 00000000 11122222222222211 11234678899
Q ss_pred HhCCCceeEEEec
Q 016981 307 QSLSLEDIKAEDW 319 (379)
Q Consensus 307 ~~aGF~~v~~~~~ 319 (379)
+++||+++++...
T Consensus 183 ~eaGf~~i~~~~~ 195 (281)
T d2gh1a1 183 SELGVKNIECRVS 195 (281)
T ss_dssp HHTTCEEEEEEEC
T ss_pred HHcCCeEEEEEEe
Confidence 9999999987643
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.84 E-value=1.1e-20 Score=165.16 Aligned_cols=103 Identities=32% Similarity=0.505 Sum_probs=95.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++...+ .++.++.+|+.++++++++||+|++..+++|
T Consensus 38 ~~~ILDiGcG~G~~~~~la~~-~~~v~giD~S~~~i~~ak~~~~~~~--~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~ 114 (226)
T d1ve3a1 38 RGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 114 (226)
T ss_dssp CCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCEEEEECCCcchhhhhHhhh-hcccccccccccchhhhhhhhcccc--ccccccccccccccccCcCceEEEEecchhh
Confidence 789999999999999999986 7899999999999999999998876 3678899999999999999999999999999
Q ss_pred CC--CHHHHHHHHHHhcCCCCEEEEEec
Q 016981 239 MP--DKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 239 ~~--~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
++ ++.++|+++.++|||||++++...
T Consensus 115 ~~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 115 FEPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 97 567899999999999999998764
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.84 E-value=5.6e-21 Score=169.15 Aligned_cols=98 Identities=28% Similarity=0.391 Sum_probs=88.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEec-cccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-ESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~-~~l~ 237 (379)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++. . ..++.+|++++++++++||+|++. .+++
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~----~---~~~~~~~~~~l~~~~~~fD~ii~~~~~~~ 114 (246)
T d2avna1 43 PCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKG----V---KNVVEAKAEDLPFPSGAFEAVLALGDVLS 114 (246)
T ss_dssp CCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHT----C---SCEEECCTTSCCSCTTCEEEEEECSSHHH
T ss_pred CCEEEEECCCCchhccccccc-ceEEEEeeccccccccccccc----c---cccccccccccccccccccceeeecchhh
Confidence 789999999999999999987 789999999999999999863 1 236789999999999999999985 6899
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|++|+.++|+++.++|||||.+++...
T Consensus 115 ~~~d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 115 YVENKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp HCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhHHHHHHHHHhhcCcCcEEEEEEC
Confidence 999999999999999999999999763
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.84 E-value=5.2e-20 Score=164.09 Aligned_cols=168 Identities=21% Similarity=0.199 Sum_probs=124.2
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC
Q 016981 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 221 (379)
..+++.++... ..+|||||||+|.++..+++++ +.+++++|+ +.+++.++++++..++.+++.+..+|+.+ +
T Consensus 71 ~~~~~~~d~~~-----~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~ 143 (256)
T d1qzza2 71 EAPADAYDWSA-----VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-P 143 (256)
T ss_dssp HHHHHTSCCTT-----CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-C
T ss_pred HHHHhcCCCcc-----CCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-c
Confidence 44555555554 7899999999999999999998 789999998 78999999999999888899999999875 4
Q ss_pred CCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCH
Q 016981 222 FPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCST 299 (379)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (379)
.+ ..||+|++.+++|++++. .++|++++++|||||+++|.+................. .+. -.....+ ...|.
T Consensus 144 ~p-~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~-d~~-ml~~~~g--~~rt~ 218 (256)
T d1qzza2 144 LP-VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLL-DLR-MLTFMGG--RVRTR 218 (256)
T ss_dssp CS-CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHH-HHH-HHHHHSC--CCCCH
T ss_pred cc-ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHH-HHH-HHhhCCC--ccCCH
Confidence 43 469999999999999765 57899999999999999999864332211111111111 110 0011111 23489
Q ss_pred HHHHHHHHhCCCceeEEEecCCC
Q 016981 300 ADYVKLLQSLSLEDIKAEDWSQN 322 (379)
Q Consensus 300 ~~~~~~l~~aGF~~v~~~~~~~~ 322 (379)
++|+++|+++||+++++......
T Consensus 219 ~e~~~ll~~AGf~~~~~~~~~~~ 241 (256)
T d1qzza2 219 DEVVDLAGSAGLALASERTSGST 241 (256)
T ss_dssp HHHHHHHHTTTEEEEEEEEECCS
T ss_pred HHHHHHHHHCCCceeEEEEeCCc
Confidence 99999999999999998765443
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.83 E-value=1.3e-20 Score=167.62 Aligned_cols=140 Identities=26% Similarity=0.422 Sum_probs=110.5
Q ss_pred HHHccCchhHHHhhhccccccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc
Q 016981 101 EFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF 180 (379)
Q Consensus 101 ~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~ 180 (379)
++|+..+..|+..+..... ........+..++......+ +.+|||+|||+|..+..++++
T Consensus 3 ~~~~~~a~~Yd~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~-----~~~iLDiGcGtG~~~~~l~~~- 62 (251)
T d1wzna1 3 ELYTLLAEYYDTIYRRRIE--------------RVKAEIDFVEEIFKEDAKRE-----VRRVLDLACGTGIPTLELAER- 62 (251)
T ss_dssp GGGTTTGGGHHHHTHHHHH--------------THHHHHHHHHHHHHHTCSSC-----CCEEEEETCTTCHHHHHHHHT-
T ss_pred chhHhhHHHHHHHHHhhhh--------------hHHHHHHHHHHHHHHhcCCC-----CCEEEEeCCCCCccchhhccc-
Confidence 4677777777766543211 11122345666666655544 789999999999999999987
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEec-cccCCCC--CHHHHHHHHHHhcCCCC
Q 016981 181 GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-ESGEHMP--DKSKFVSELARVTAPAG 257 (379)
Q Consensus 181 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~-~~l~~~~--~~~~~l~~~~r~LkpgG 257 (379)
+.+|+|+|+|+.|++.|++++...+. ++.+.++|+++++++ ++||+|++. .+++|+. +...+|++++++|||||
T Consensus 63 ~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG 139 (251)
T d1wzna1 63 GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGG 139 (251)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred ceEEEEEeeccccccccccccccccc--cchheehhhhhcccc-cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCc
Confidence 78999999999999999999988764 799999999999876 689999986 5677763 45789999999999999
Q ss_pred EEEEEe
Q 016981 258 TIIIVT 263 (379)
Q Consensus 258 ~l~i~~ 263 (379)
++++..
T Consensus 140 ~lii~~ 145 (251)
T d1wzna1 140 VFITDF 145 (251)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 998854
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.83 E-value=3.9e-20 Score=164.15 Aligned_cols=101 Identities=21% Similarity=0.293 Sum_probs=89.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEec-cccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-ESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~-~~l~ 237 (379)
+.+|||+|||+|.++..++++ +.+|+|+|+|+.|++.|++++...+. +++++++|+.++++ +++||+|+|. .+++
T Consensus 38 ~~~vLDiGCG~G~~~~~l~~~-g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~~-~~~fD~i~~~~~~~~ 113 (246)
T d1y8ca_ 38 FDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNI-NRKFDLITCCLDSTN 113 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCC-SCCEEEEEECTTGGG
T ss_pred CCeEEEEeCcCCHHHHHHHHh-CCccEeeccchhhhhhccccccccCc--cceeeccchhhhcc-cccccccceeeeeee
Confidence 679999999999999999997 78999999999999999999988775 79999999998876 4789999976 6778
Q ss_pred CCCC---HHHHHHHHHHhcCCCCEEEEEe
Q 016981 238 HMPD---KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 238 ~~~~---~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|+.+ ..+++++++++|||||.+++..
T Consensus 114 ~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 8764 4679999999999999998754
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.82 E-value=1.6e-19 Score=154.81 Aligned_cols=137 Identities=23% Similarity=0.373 Sum_probs=108.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||||||+|..+..++++ +.+|+|+|+|+.|++.++++.+..++ +++.+...|+..+++ +++||+|++..+++|
T Consensus 31 ~grvLDiGcG~G~~~~~la~~-g~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~ 107 (198)
T d2i6ga1 31 PGRTLDLGCGNGRNSLYLAAN-GYDVTAWDKNPASMANLERIKAAEGL-DNLQTDLVDLNTLTF-DGEYDFILSTVVMMF 107 (198)
T ss_dssp SCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEECCTTTCCC-CCCEEEEEEESCGGG
T ss_pred CCcEEEECCCCCHHHHHHHHH-hhhhccccCcHHHHHHHHHHhhhccc-cchhhhheecccccc-cccccEEEEeeeeec
Confidence 569999999999999999987 78999999999999999999998887 489999999998875 688999999999999
Q ss_pred CCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 239 MPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 239 ~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
+++. .+++++++++|+|||++++..+......+ .. ...+..++..++.+++ +||+++..
T Consensus 108 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~-------------~~----~~~~~~~~~~el~~~~--~~~~i~~~ 168 (198)
T d2i6ga1 108 LEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFP-------------CT----VGFPFAFKEGELRRYY--EGWDMLKY 168 (198)
T ss_dssp SCTTHHHHHHHHHHHTEEEEEEEEEEEEBC--------------------------CCCCBCTTHHHHHT--TTSEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccCC-------------CC----CCCCCccCHHHHHHHh--CCCeEEEe
Confidence 9654 68999999999999999998764322111 00 0111233556677776 68887754
Q ss_pred E
Q 016981 317 E 317 (379)
Q Consensus 317 ~ 317 (379)
.
T Consensus 169 ~ 169 (198)
T d2i6ga1 169 N 169 (198)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=1.1e-18 Score=157.76 Aligned_cols=149 Identities=14% Similarity=0.152 Sum_probs=109.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE--EEccCCC------CCC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-------GAKCQGITLSPVQAQRANALAAARGLADKVSF--QVGDALQ------QPF 222 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~--~~~d~~~------~~~ 222 (379)
+..+|||||||+|.++..+++.. +..++|+|+|+.|++.|+++++......++.+ ...+++. .+.
T Consensus 40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (280)
T d1jqea_ 40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKK 119 (280)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSS
T ss_pred CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccC
Confidence 35689999999999988876642 23689999999999999999865433344544 3333322 245
Q ss_pred CCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc---CCCCCCCH
Q 016981 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY---YLPAWCST 299 (379)
Q Consensus 223 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 299 (379)
++++||+|++.++++|++|+..++++++++|||||.+++..+.... .....+......+ ....+.+.
T Consensus 120 ~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~----------~~~~l~~~~~~~~~~~~~~~~~~~ 189 (280)
T d1jqea_ 120 ELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSS----------GWDKLWKKYGSRFPQDDLCQYITS 189 (280)
T ss_dssp SCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTS----------HHHHHHHHHGGGSCCCTTSCCCCH
T ss_pred CCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcc----------hHHHHHHHHHHhcCCCcccccCCH
Confidence 6789999999999999999999999999999999999998754321 1122333333222 12245688
Q ss_pred HHHHHHHHhCCCceeEE
Q 016981 300 ADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 300 ~~~~~~l~~aGF~~v~~ 316 (379)
+++.++|++.||..+..
T Consensus 190 ~~~~~~L~~~G~~~~~~ 206 (280)
T d1jqea_ 190 DDLTQMLDNLGLKYECY 206 (280)
T ss_dssp HHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHCCCceEEE
Confidence 99999999999986543
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.79 E-value=2.8e-19 Score=152.65 Aligned_cols=151 Identities=15% Similarity=0.146 Sum_probs=114.1
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CCCe
Q 016981 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL-----------ADKV 210 (379)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~i 210 (379)
+.+.+..+.+.+ +.+|||+|||+|..+..|+++ |.+|+|+|+|+.|++.|+++++..+. ..++
T Consensus 9 ~~~~~~~l~~~~-----~~rvLd~GCG~G~~a~~la~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T d1pjza_ 9 LQQYWSSLNVVP-----GARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGI 82 (201)
T ss_dssp HHHHHHHHCCCT-----TCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSS
T ss_pred HHHHHHHcCCCC-----CCEEEEecCcCCHHHHHHHHc-CCceEeecccHHHHHHHHHHhccccchhhhhhhhhcccccc
Confidence 444455556554 899999999999999999998 89999999999999999998854321 1356
Q ss_pred EEEEccCCCCC-CCCCcccEEEeccccCCCCC--HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHH
Q 016981 211 SFQVGDALQQP-FPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI 287 (379)
Q Consensus 211 ~~~~~d~~~~~-~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (379)
.+..+|+.+++ .....||+|++..+++|+.+ ...++++++++|||||++++.........+..
T Consensus 83 ~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~~-------------- 148 (201)
T d1pjza_ 83 EIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEG-------------- 148 (201)
T ss_dssp EEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSS--------------
T ss_pred ceecccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCCC--------------
Confidence 78899988875 34578999999999999974 57899999999999999988776543322111
Q ss_pred hhccCCCCCCCHHHHHHHHHhCCCceeEEEe
Q 016981 288 CDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 318 (379)
.+...+.+++++++. .+|++..++.
T Consensus 149 -----p~~~~~~~el~~l~~-~~~~i~~~~~ 173 (201)
T d1pjza_ 149 -----PPFSVPQTWLHRVMS-GNWEVTKVGG 173 (201)
T ss_dssp -----CCCCCCHHHHHHTSC-SSEEEEEEEE
T ss_pred -----ccccCCHHHHHHHhC-CCcEEEEEEE
Confidence 011346778877764 6777654443
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=3.3e-20 Score=165.48 Aligned_cols=150 Identities=11% Similarity=-0.030 Sum_probs=108.9
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCC----------------------------
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADK---------------------------- 209 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~---------------------------- 209 (379)
++.+|||||||+|.++..++.....+|+|+|+|+.|++.|++++........
T Consensus 51 ~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (257)
T d2a14a1 51 QGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA 130 (257)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhh
Confidence 4789999999999998877766445799999999999999999875432110
Q ss_pred e-EEEEccC----CCCCCCCCcccEEEeccccCCCC----CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHH
Q 016981 210 V-SFQVGDA----LQQPFPDGQFDLVWSMESGEHMP----DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWE 280 (379)
Q Consensus 210 i-~~~~~d~----~~~~~~~~~fD~V~~~~~l~~~~----~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 280 (379)
+ .....+. ...+++.++||+|++..+++|+. +...++++++++|||||.+++.++........
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~-------- 202 (257)
T d2a14a1 131 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMV-------- 202 (257)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEE--------
T ss_pred hhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccccccee--------
Confidence 0 1111121 12356788999999999999995 45689999999999999999998754331100
Q ss_pred HHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEecCCC
Q 016981 281 QELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQN 322 (379)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 322 (379)
.........++.++++++|++|||++++++.....
T Consensus 203 -------~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~~ 237 (257)
T d2a14a1 203 -------GKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQS 237 (257)
T ss_dssp -------TTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCC
T ss_pred -------ccccccccCCCHHHHHHHHHHCCCEEEEEEEeccc
Confidence 00011113568999999999999999888655443
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.3e-18 Score=152.50 Aligned_cols=138 Identities=13% Similarity=0.145 Sum_probs=109.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC----------------CCCCeEEEEccCCCC-C
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG----------------LADKVSFQVGDALQQ-P 221 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----------------~~~~i~~~~~d~~~~-~ 221 (379)
+.+|||+|||+|..+..|+++ |.+|+|+|+|+.+++.|+++..... ...++.+.++|+.++ +
T Consensus 46 ~~rvLd~GCG~G~~a~~LA~~-G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~ 124 (229)
T d2bzga1 46 GLRVFFPLCGKAVEMKWFADR-GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPR 124 (229)
T ss_dssp SCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGG
T ss_pred CCEEEEeCCCCcHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhccc
Confidence 889999999999999999997 8899999999999999988764321 124789999999887 4
Q ss_pred CCCCcccEEEeccccCCCC--CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCH
Q 016981 222 FPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCST 299 (379)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (379)
...+.||+|+...+++|++ +...+++++.++|||||++++..+....... .+-|...+.
T Consensus 125 ~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~-------------------~gpp~~~~~ 185 (229)
T d2bzga1 125 TNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKH-------------------PGPPFYVPH 185 (229)
T ss_dssp SCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTC-------------------CCSSCCCCH
T ss_pred cccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCC-------------------CCCCCCCCH
Confidence 5678999999999999995 4578999999999999999888765433211 011224588
Q ss_pred HHHHHHHHhCCCceeEEE
Q 016981 300 ADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 300 ~~~~~~l~~aGF~~v~~~ 317 (379)
+++.+++.. +|++...+
T Consensus 186 ~el~~lf~~-~~~i~~le 202 (229)
T d2bzga1 186 AEIERLFGK-ICNIRCLE 202 (229)
T ss_dssp HHHHHHHTT-TEEEEEEE
T ss_pred HHHHHHhcC-CCEEEEEE
Confidence 999999964 67654443
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.77 E-value=8.2e-19 Score=153.14 Aligned_cols=142 Identities=14% Similarity=0.131 Sum_probs=112.1
Q ss_pred CCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CCCCCcccEEE
Q 016981 154 DPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVW 231 (379)
Q Consensus 154 ~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~V~ 231 (379)
.+.+++.+|||+|||+|.++..+++.. +..|+|+|+|+.|++.++++.... +++.++..|.... ++.+..+|+++
T Consensus 70 l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~~~~~~v~~ 146 (230)
T d1g8sa_ 70 MPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIVEKVDV 146 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred CCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh---cccceEEEeeccCcccccccceeEE
Confidence 344569999999999999999999976 579999999999999999886543 4788888888765 35567788888
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCC
Q 016981 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSL 311 (379)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 311 (379)
+...+++..++..++.++.+.|||||.++++.......... .. .. ..++..+.|+++||
T Consensus 147 i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~----~~--~~---------------~~~e~~~~L~~aGF 205 (230)
T d1g8sa_ 147 IYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTK----DP--KE---------------IFKEQKEILEAGGF 205 (230)
T ss_dssp EEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSS----CH--HH---------------HHHHHHHHHHHHTE
T ss_pred eeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCC----CH--HH---------------HHHHHHHHHHHcCC
Confidence 88888898889999999999999999999987533211100 00 00 23567789999999
Q ss_pred ceeEEEec
Q 016981 312 EDIKAEDW 319 (379)
Q Consensus 312 ~~v~~~~~ 319 (379)
++++..++
T Consensus 206 ~ive~idL 213 (230)
T d1g8sa_ 206 KIVDEVDI 213 (230)
T ss_dssp EEEEEEEC
T ss_pred EEEEEecC
Confidence 99988765
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.77 E-value=7e-19 Score=156.50 Aligned_cols=107 Identities=23% Similarity=0.249 Sum_probs=93.3
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC-CCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~V~~~~~l 236 (379)
++.+|||+|||+|..+..+++....+|+|+|+|+.|++.|+++....+...++.|.++|+...++ ..++||+|++..++
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l 103 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF 103 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEccee
Confidence 38899999999999999998875568999999999999999999887766789999999987765 46789999999999
Q ss_pred CCCCC----HHHHHHHHHHhcCCCCEEEEEec
Q 016981 237 EHMPD----KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 237 ~~~~~----~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+|+.+ ...+++++.++|||||++++..+
T Consensus 104 ~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 104 HYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 99843 35799999999999999988653
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.77 E-value=8.2e-19 Score=155.13 Aligned_cols=124 Identities=19% Similarity=0.301 Sum_probs=102.8
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
++.+|||+|||+|.+++.+++. |.+|+|+|+|+.+++.|+++++.+++ ++.+.++|+.+ .++.++||+|+++...+
T Consensus 120 ~g~~VLDiGcGsG~l~i~aa~~-g~~V~gvDis~~av~~A~~na~~n~~--~~~~~~~d~~~-~~~~~~fD~V~ani~~~ 195 (254)
T d2nxca1 120 PGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVLPQAEANAKRNGV--RPRFLEGSLEA-ALPFGPFDLLVANLYAE 195 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGHHHHHHHHHHTTC--CCEEEESCHHH-HGGGCCEEEEEEECCHH
T ss_pred ccCEEEEcccchhHHHHHHHhc-CCEEEEEECChHHHHHHHHHHHHcCC--ceeEEeccccc-cccccccchhhhccccc
Confidence 4899999999999999988875 78999999999999999999999887 46788888765 34568999999875544
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEE
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
. ...++.++.++|||||+++++++... ..+.+.+.++++||+.++..
T Consensus 196 ~---l~~l~~~~~~~LkpGG~lilSgil~~------------------------------~~~~v~~~~~~~Gf~~~~~~ 242 (254)
T d2nxca1 196 L---HAALAPRYREALVPGGRALLTGILKD------------------------------RAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp H---HHHHHHHHHHHEEEEEEEEEEEEEGG------------------------------GHHHHHHHHHHTTCEEEEEE
T ss_pred c---HHHHHHHHHHhcCCCcEEEEEecchh------------------------------hHHHHHHHHHHCCCEEEEEE
Confidence 3 37788999999999999999874311 24578889999999988765
Q ss_pred e
Q 016981 318 D 318 (379)
Q Consensus 318 ~ 318 (379)
.
T Consensus 243 ~ 243 (254)
T d2nxca1 243 A 243 (254)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.76 E-value=2.5e-18 Score=145.70 Aligned_cols=112 Identities=24% Similarity=0.321 Sum_probs=98.1
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC
Q 016981 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 222 (379)
..++..+...+ +.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++++..++.++++++++|+.+.+.
T Consensus 23 ~~il~~l~~~~-----g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~ 96 (186)
T d1l3ia_ 23 CLIMCLAEPGK-----NDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC 96 (186)
T ss_dssp HHHHHHHCCCT-----TCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT
T ss_pred HHHHHhcCCCC-----CCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccc
Confidence 44455556654 999999999999999999987 679999999999999999999999998899999999988777
Q ss_pred CCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 223 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+...||+|++....++ ...+++.+.+.|||||++++..
T Consensus 97 ~~~~~D~v~~~~~~~~---~~~~~~~~~~~LkpgG~lvi~~ 134 (186)
T d1l3ia_ 97 KIPDIDIAVVGGSGGE---LQEILRIIKDKLKPGGRIIVTA 134 (186)
T ss_dssp TSCCEEEEEESCCTTC---HHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccCCcCEEEEeCcccc---chHHHHHHHHHhCcCCEEEEEe
Confidence 7789999999876655 4789999999999999998865
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=6.6e-18 Score=151.40 Aligned_cols=96 Identities=29% Similarity=0.423 Sum_probs=87.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||+|.++..+++.+ +.+++|+|+|+.|++.|+++. +++.|.++|+.++|+++++||+|++.++++
T Consensus 85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~ 158 (268)
T d1p91a_ 85 ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAIIRIYAPC 158 (268)
T ss_dssp CCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEEEESCCC
T ss_pred CCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------ccccceeeehhhccCCCCCEEEEeecCCHH
Confidence 7899999999999999999987 679999999999999998753 579999999999999999999999998887
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEeccCC
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 267 (379)
| +++++|+|||||+++++++...
T Consensus 159 ~-------~~e~~rvLkpgG~l~~~~p~~~ 181 (268)
T d1p91a_ 159 K-------AEELARVVKPGGWVITATPGPR 181 (268)
T ss_dssp C-------HHHHHHHEEEEEEEEEEEECTT
T ss_pred H-------HHHHHHHhCCCcEEEEEeeCCc
Confidence 7 5789999999999999986543
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=7.1e-18 Score=150.79 Aligned_cols=150 Identities=11% Similarity=-0.022 Sum_probs=107.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----------------------------
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD----------------------------- 208 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~----------------------------- 208 (379)
++.+|||+|||+|......+.....+|+|+|+|+.|++.+++++......-
T Consensus 54 ~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T d2g72a1 54 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 133 (263)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhh
Confidence 488999999999988766555556699999999999999998765432110
Q ss_pred CeEEEEccCCCC------CCCCCcccEEEeccccCCCC----CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccch
Q 016981 209 KVSFQVGDALQQ------PFPDGQFDLVWSMESGEHMP----DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQP 278 (379)
Q Consensus 209 ~i~~~~~d~~~~------~~~~~~fD~V~~~~~l~~~~----~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~ 278 (379)
......+|+... +...++||+|++..+++|+. +...++++++++|||||.|++.+..........
T Consensus 134 ~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~----- 208 (263)
T d2g72a1 134 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAG----- 208 (263)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEET-----
T ss_pred hhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccC-----
Confidence 123344565432 24456899999999999985 457899999999999999999886433211000
Q ss_pred HHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEecCCC
Q 016981 279 WEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQN 322 (379)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 322 (379)
...+ ....++.++++++|+++||++++.+....+
T Consensus 209 ---------~~~~-~~~~~t~e~v~~~l~~aGf~v~~~~~~~~~ 242 (263)
T d2g72a1 209 ---------EARL-TVVPVSEEEVREALVRSGYKVRDLRTYIMP 242 (263)
T ss_dssp ---------TEEE-ECCCCCHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred ---------Cccc-ccCCCCHHHHHHHHHHCCCeEEEEEEeecc
Confidence 0011 112469999999999999999887655443
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=7.1e-19 Score=154.17 Aligned_cols=103 Identities=20% Similarity=0.158 Sum_probs=88.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC--CCCCCcccEEE-----
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVW----- 231 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~----- 231 (379)
+.+|||||||+|..+..+++..+.+|+|+|+|+.+++.|++++...+ .++.+...|+... ++++++||.|+
T Consensus 54 g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~ 131 (229)
T d1zx0a1 54 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 131 (229)
T ss_dssp CEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred CCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc--cccccccccccccccccccccccceeecccc
Confidence 88999999999999999998755789999999999999999987654 4677777776543 56778899887
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+...++|+.++..++++++|+|||||+|++.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 132 LSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp CBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cccccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 56778888899999999999999999998754
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.73 E-value=1.5e-17 Score=147.22 Aligned_cols=114 Identities=15% Similarity=0.205 Sum_probs=101.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHc--CCCCCeEEEEcc
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAAR--GLADKVSFQVGD 216 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~i~~~~~d 216 (379)
-+..++..+++.+ +.+|||+|||+|.++..|++.. .++|+++|+++++++.|+++++.. +...++.+.++|
T Consensus 84 D~s~Ii~~l~i~P-----G~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d 158 (264)
T d1i9ga_ 84 DAAQIVHEGDIFP-----GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD 158 (264)
T ss_dssp HHHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC
T ss_pred HHHHHHHHhCCCC-----CCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecc
Confidence 4566777778876 9999999999999999999986 469999999999999999998764 445799999999
Q ss_pred CCCCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 217 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+.+.++++++||.|++ +++++..++.++.++|||||++++...
T Consensus 159 ~~~~~~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P 201 (264)
T d1i9ga_ 159 LADSELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVA 201 (264)
T ss_dssp GGGCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred cccccccCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeC
Confidence 9988888999999985 689999999999999999999988763
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.72 E-value=9.1e-18 Score=147.63 Aligned_cols=135 Identities=15% Similarity=0.187 Sum_probs=107.1
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
..++..+++.+ +.+|||+|||+|.++..+++.. +++|+++|.++.+++.|+++++..+...++.+..+|+.+.
T Consensus 75 ~~Ii~~l~i~p-----G~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~ 149 (250)
T d1yb2a1 75 SYIIMRCGLRP-----GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF 149 (250)
T ss_dssp ------CCCCT-----TCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC
T ss_pred HHHHHHcCCCC-----cCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc
Confidence 44566777776 9999999999999999999875 4699999999999999999999876668999999998875
Q ss_pred CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (379)
++++.||.|++ +++++..++.++.++|||||++++...+. . -..
T Consensus 150 -~~~~~fD~V~l-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~i---------------~---------------Qv~ 193 (250)
T d1yb2a1 150 -ISDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNF---------------D---------------QSE 193 (250)
T ss_dssp -CCSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSH---------------H---------------HHH
T ss_pred -cccceeeeeee-----cCCchHHHHHHHHHhcCCCceEEEEeCCc---------------C---------------hHH
Confidence 45789999986 57888999999999999999999865321 0 023
Q ss_pred HHHHHHHhCCCceeEEEe
Q 016981 301 DYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 301 ~~~~~l~~aGF~~v~~~~ 318 (379)
+..+.|++.||..+++..
T Consensus 194 ~~~~~l~~~gf~~i~~~E 211 (250)
T d1yb2a1 194 KTVLSLSASGMHHLETVE 211 (250)
T ss_dssp HHHHHSGGGTEEEEEEEE
T ss_pred HHHHHHHHCCCceeEEEE
Confidence 455677889998876543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.71 E-value=4.2e-17 Score=140.19 Aligned_cols=106 Identities=13% Similarity=0.068 Sum_probs=88.1
Q ss_pred CCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEE-ec
Q 016981 156 TKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVW-SM 233 (379)
Q Consensus 156 ~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~-~~ 233 (379)
.+|+.+|||+|||+|..+..+++.. .++|+|+|+|+.|++.|+++++.. +|+.++..|+...+.....+|.|. +.
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~~~~~~vd~v~ 130 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIVEKVDLIY 130 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc---CCceEEEeeccCccccccccceEEEEE
Confidence 3469999999999999999999987 469999999999999999998875 489999999887654444444442 33
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
..+.|..+...++++++++|||||++++...
T Consensus 131 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 131 QDIAQKNQIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ecccChhhHHHHHHHHHHHhccCCeEEEEEE
Confidence 4577777888999999999999999999874
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.70 E-value=8.3e-17 Score=137.11 Aligned_cols=112 Identities=14% Similarity=0.194 Sum_probs=95.1
Q ss_pred HHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEccCCCCCCC
Q 016981 145 TLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQQPFP 223 (379)
Q Consensus 145 ~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~ 223 (379)
+++.+.... +.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++++.+++.. ++++..+|..+ +++
T Consensus 44 Li~~l~~~~-----~~~VLDiGcG~G~~~~~la~~-~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~ 116 (194)
T d1dusa_ 44 LVENVVVDK-----DDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVK 116 (194)
T ss_dssp HHHHCCCCT-----TCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCT
T ss_pred HHHhCCcCC-----CCeEEEEeecCChhHHHHHhh-ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhc
Confidence 445555544 899999999999999999886 6799999999999999999999887753 68999999876 556
Q ss_pred CCcccEEEeccccCCCCCH-HHHHHHHHHhcCCCCEEEEEe
Q 016981 224 DGQFDLVWSMESGEHMPDK-SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 224 ~~~fD~V~~~~~l~~~~~~-~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+++||+|+++.++++..+. ..+++++.++|||||.+++..
T Consensus 117 ~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 117 DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEE
Confidence 7899999999888776553 778999999999999988754
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.70 E-value=9.6e-17 Score=138.51 Aligned_cols=112 Identities=14% Similarity=0.272 Sum_probs=97.4
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 217 (379)
.++..+++.+++++ +.+|||||||+|..+..+++.. ..+|+++|+++.+++.|+++++..++ .|+.+.++|.
T Consensus 62 ~~~a~~l~~l~l~~-----g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~-~n~~~~~~d~ 135 (213)
T d1dl5a1 62 SLMALFMEWVGLDK-----GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-ENVIFVCGDG 135 (213)
T ss_dssp HHHHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCG
T ss_pred hhhHHHHHhhhccc-----cceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc-cccccccCch
Confidence 35667788888776 9999999999999999999876 46899999999999999999998887 6899999998
Q ss_pred CCCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 218 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.+....+++||+|++..+++++++ ++.+.|||||+|++..
T Consensus 136 ~~~~~~~~~fD~I~~~~~~~~~p~------~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 136 YYGVPEFSPYDVIFVTVGVDEVPE------TWFTQLKEGGRVIVPI 175 (213)
T ss_dssp GGCCGGGCCEEEEEECSBBSCCCH------HHHHHEEEEEEEEEEB
T ss_pred HHccccccchhhhhhhccHHHhHH------HHHHhcCCCcEEEEEE
Confidence 887666789999999999999863 4678899999998854
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.70 E-value=7.7e-17 Score=143.38 Aligned_cols=137 Identities=20% Similarity=0.251 Sum_probs=113.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
-...++..+++.+ +.+|||+|||+|.++..+++.. +++|+++|+++.+++.|+++++..++..++.+...|+.
T Consensus 91 d~~~Ii~~l~i~p-----G~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~ 165 (266)
T d1o54a_ 91 DSSFIAMMLDVKE-----GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS 165 (266)
T ss_dssp HHHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG
T ss_pred HHHHHHHhhCCCC-----CCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccc
Confidence 4456777888876 9999999999999999999876 47999999999999999999999998888999888864
Q ss_pred CCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCC
Q 016981 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (379)
. .+....||.|+. +++++..+++++.++|||||++++...+. . .
T Consensus 166 ~-~~~~~~~D~V~~-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~~---------------~---------------Q 209 (266)
T d1o54a_ 166 E-GFDEKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPTT---------------N---------------Q 209 (266)
T ss_dssp G-CCSCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESSH---------------H---------------H
T ss_pred c-cccccceeeeEe-----cCCCHHHHHHHHHhhcCCCCEEEEEeCcc---------------c---------------H
Confidence 4 345677998864 78999999999999999999999876321 0 1
Q ss_pred HHHHHHHHHhCCCceeEEEe
Q 016981 299 TADYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 299 ~~~~~~~l~~aGF~~v~~~~ 318 (379)
.++..+.|++.||..+++..
T Consensus 210 v~~~~~~l~~~gF~~i~~~E 229 (266)
T d1o54a_ 210 VQETLKKLQELPFIRIEVWE 229 (266)
T ss_dssp HHHHHHHHHHSSEEEEEEEC
T ss_pred HHHHHHHHHHCCceeEEEEE
Confidence 34566788899998887754
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.66 E-value=4.2e-16 Score=133.09 Aligned_cols=104 Identities=22% Similarity=0.187 Sum_probs=93.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--CCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~~~ 235 (379)
.-.|||||||+|.++..+|+.. +..++|+|+++.++..|.++....++ +|+.++.+|+..+. ++++++|.|++.+.
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l-~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc-cCchhcccchhhhhcccCchhhhccccccc
Confidence 4479999999999999999998 78999999999999999999999988 59999999998764 78899999999888
Q ss_pred cCCCCCH--------HHHHHHHHHhcCCCCEEEEEe
Q 016981 236 GEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 l~~~~~~--------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
..+.... ..++++++|+|||||.|.+.+
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 8776543 479999999999999998875
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=8.6e-16 Score=139.22 Aligned_cols=104 Identities=25% Similarity=0.312 Sum_probs=82.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC---CCeEEEEccCCCCC---CCCCcccEEEe
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA---DKVSFQVGDALQQP---FPDGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~i~~~~~d~~~~~---~~~~~fD~V~~ 232 (379)
+.+|||+|||+|..+..|+++ |.+|+|+|+|+.|++.|+++....+.. .+..+...+...+. ...++||+|++
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~-g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~~ 135 (292)
T d1xvaa_ 57 CHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVIC 135 (292)
T ss_dssp CCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHc-CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEEE
Confidence 679999999999999999997 789999999999999999988776542 12344555543321 12478999997
Q ss_pred c-cccCCCCC-------HHHHHHHHHHhcCCCCEEEEEe
Q 016981 233 M-ESGEHMPD-------KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 233 ~-~~l~~~~~-------~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
. .+++|+++ ...+|++++++|||||.|++..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 136 LGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp CSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 5 58889865 3579999999999999999865
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=6e-16 Score=142.28 Aligned_cols=119 Identities=14% Similarity=0.237 Sum_probs=97.8
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHc-------CC-CCC
Q 016981 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAAR-------GL-ADK 209 (379)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~-------~~-~~~ 209 (379)
...+.++++.+.+.+ +.+|||+|||+|.++..+++..+ .+++|+|+|+.+++.|+++.+.. |. ..+
T Consensus 137 ~~~~~~~~~~~~l~~-----~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~ 211 (328)
T d1nw3a_ 137 FDLVAQMIDEIKMTD-----DDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAE 211 (328)
T ss_dssp HHHHHHHHHHSCCCT-----TCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHcCCCC-----CCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCc
Confidence 356778888888776 99999999999999999998874 47999999999999998876542 22 357
Q ss_pred eEEEEccCCCCCCCCCcc--cEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 210 VSFQVGDALQQPFPDGQF--DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 210 i~~~~~d~~~~~~~~~~f--D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.|.++|+.+.++.+..+ |+|++ +.+.|.++....|.++.+.|||||++++..
T Consensus 212 i~~~~gd~~~~~~~~~~~~advi~~-~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 212 YTLERGDFLSEEWRERIANTSVIFV-NNFAFGPEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp EEEEECCTTSHHHHHHHHHCSEEEE-CCTTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred eEEEECcccccccccccCcceEEEE-cceecchHHHHHHHHHHHhCCCCcEEEEec
Confidence 999999999887766555 55554 556677888999999999999999998865
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=2.4e-15 Score=130.39 Aligned_cols=112 Identities=19% Similarity=0.247 Sum_probs=93.2
Q ss_pred HHHHHHHHc--CCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCC----CCeEE
Q 016981 141 MIEETLRFA--GVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLA----DKVSF 212 (379)
Q Consensus 141 ~~~~~l~~~--~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~----~~i~~ 212 (379)
+...+++.+ .+. ++.+|||||||+|..+..+++.. ..+|+++|+++.+++.|+++++..++. .++.+
T Consensus 62 ~~a~~le~L~~~l~-----~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~ 136 (224)
T d1i1na_ 62 MHAYALELLFDQLH-----EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQL 136 (224)
T ss_dssp HHHHHHHHTTTTSC-----TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEE
T ss_pred HHHHHHHHHhhccC-----CCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEE
Confidence 455666665 333 48999999999999999999875 469999999999999999998875532 57899
Q ss_pred EEccCCCCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 213 QVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 213 ~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
..+|....+.+.++||+|++..++.++++ ++.+.|||||+|++..
T Consensus 137 ~~gD~~~~~~~~~~fD~I~~~~~~~~ip~------~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 137 VVGDGRMGYAEEAPYDAIHVGAAAPVVPQ------ALIDQLKPGGRLILPV 181 (224)
T ss_dssp EESCGGGCCGGGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred EEeecccccchhhhhhhhhhhcchhhcCH------HHHhhcCCCcEEEEEE
Confidence 99999887777889999999999998853 5778999999999854
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=3.4e-15 Score=135.94 Aligned_cols=113 Identities=18% Similarity=0.185 Sum_probs=92.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHc----------CCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAAR----------GLAD 208 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~----------~~~~ 208 (379)
-+..++..+++.+ +.+|||+|||+|.++..|++.. .++|+++|+++.+++.|+++++.. +.+.
T Consensus 86 D~~~Il~~l~i~p-----G~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~ 160 (324)
T d2b25a1 86 DINMILSMMDINP-----GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPD 160 (324)
T ss_dssp HHHHHHHHHTCCT-----TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCC
T ss_pred cHHHHHHHhCCCC-----CCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence 3456667778876 9999999999999999999976 469999999999999999998763 3457
Q ss_pred CeEEEEccCCCCC--CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 209 KVSFQVGDALQQP--FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 209 ~i~~~~~d~~~~~--~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|+.+...|+.+.. +++..||.|++ .++++..++.++.++|||||+|++..
T Consensus 161 nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~ 212 (324)
T d2b25a1 161 NVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYV 212 (324)
T ss_dssp CEEEEESCTTCCC-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred ceeEEecchhhcccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEe
Confidence 8999999988753 45678999986 56788889999999999999999865
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.60 E-value=1.1e-14 Score=127.66 Aligned_cols=160 Identities=19% Similarity=0.186 Sum_probs=111.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
....+++....-. ...+|||||||+|.++..+++++ +.+++..|+ |..++ ..+..+++++..+|+.+
T Consensus 68 ~~~~l~~~~~~f~----~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~~~~ri~~~~gd~~~ 135 (244)
T d1fp1d2 68 EMKRMLEIYTGFE----GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIE-------NAPPLSGIEHVGGDMFA 135 (244)
T ss_dssp HHHHHHHHCCTTT----TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCCCCTTEEEEECCTTT
T ss_pred HHHHHHHhccccc----CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhh-------ccCCCCCeEEecCCccc
Confidence 4455666555211 36899999999999999999999 789999998 44433 23344789999999865
Q ss_pred CCCCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHH-HHHHhhccCCCCC
Q 016981 220 QPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQEL-LKKICDAYYLPAW 296 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 296 (379)
+.| ..|++++.+++|+.+|. .++|+++++.|+|||+++|.+...++...... .......+ +.-.....+ .-
T Consensus 136 -~~p--~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~-~~~~~~~~d~~m~~~~~g--~e 209 (244)
T d1fp1d2 136 -SVP--QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSE-ESKLVSTLDNLMFITVGG--RE 209 (244)
T ss_dssp -CCC--CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSH-HHHHHHHHHHHHHHHHSC--CC
T ss_pred -ccc--cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCch-HHHHHHHHHHHHHhhCCC--cC
Confidence 333 35999999999999875 58899999999999999999976543221111 11111111 000111111 13
Q ss_pred CCHHHHHHHHHhCCCceeEEEe
Q 016981 297 CSTADYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 297 ~~~~~~~~~l~~aGF~~v~~~~ 318 (379)
.|.++|.++|++|||+.+++..
T Consensus 210 rt~~e~~~ll~~AGF~~v~v~~ 231 (244)
T d1fp1d2 210 RTEKQYEKLSKLSGFSKFQVAC 231 (244)
T ss_dssp EEHHHHHHHHHHTTCSEEEEEE
T ss_pred CCHHHHHHHHHHcCCCceEEEe
Confidence 4899999999999999998753
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.59 E-value=9.8e-15 Score=124.48 Aligned_cols=104 Identities=21% Similarity=0.249 Sum_probs=90.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--CCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~~~ 235 (379)
...|||||||+|.++..+|+.+ ...++|+|+++.++..|.+++...++ +|+.+..+|+..+. ++++++|.|++.+.
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l-~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc-ccceeeecCHHHHhhhccCCceehhccccc
Confidence 4579999999999999999998 78999999999999999999999888 58999999998864 77899999998765
Q ss_pred cCCCCCH--------HHHHHHHHHhcCCCCEEEEEe
Q 016981 236 GEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 l~~~~~~--------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
-.+.... ..+|+.++++|||||.|.+.+
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 5544322 689999999999999998865
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=1.5e-14 Score=133.10 Aligned_cols=101 Identities=25% Similarity=0.331 Sum_probs=89.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+++|||||||+|.++..+++....+|+|+|.|+ ++..|+++.+..+...++.++.+|+.++++++++||+|++..+.++
T Consensus 39 ~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~ 117 (328)
T d1g6q1_ 39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYF 117 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTT
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEeccee
Confidence 889999999999999998887446899999996 7788999999999888999999999999998899999998766655
Q ss_pred C---CCHHHHHHHHHHhcCCCCEEE
Q 016981 239 M---PDKSKFVSELARVTAPAGTII 260 (379)
Q Consensus 239 ~---~~~~~~l~~~~r~LkpgG~l~ 260 (379)
+ .....++..+.++|||||.++
T Consensus 118 ~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 118 LLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp BSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eccchhHHHHHHHHHhccCCCeEEE
Confidence 4 456889999999999999885
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.57 E-value=2.4e-14 Score=123.91 Aligned_cols=106 Identities=17% Similarity=0.195 Sum_probs=86.8
Q ss_pred CCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC---CCCCCccc
Q 016981 154 DPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFPDGQFD 228 (379)
Q Consensus 154 ~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~fD 228 (379)
.+.+|+.+|||+|||+|.++..+++.. .++|+|+|+|+.|++.++++++.. .++..+..|.... +.....+|
T Consensus 69 l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~---~~~~~i~~d~~~~~~~~~~~~~vD 145 (227)
T d1g8aa_ 69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVPKVD 145 (227)
T ss_dssp CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCCCEE
T ss_pred cccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc---CCceEEEEECCCcccccccccceE
Confidence 344569999999999999999999986 469999999999999999987654 4688888887553 33446788
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+|++ .+.+..+...+++++.+.|||||+++++..
T Consensus 146 ~i~~--d~~~~~~~~~~l~~~~~~LkpgG~lvi~~k 179 (227)
T d1g8aa_ 146 VIFE--DVAQPTQAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp EEEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEE--EccccchHHHHHHHHHHhcccCCeEEEEEE
Confidence 8875 455667778899999999999999998764
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.56 E-value=1.3e-14 Score=125.27 Aligned_cols=107 Identities=15% Similarity=0.160 Sum_probs=89.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
+...+++.+.+.+ +.+|||||||+|.++..|++. +.+|+++|+++.+++.|++++... .|+.+..+|....
T Consensus 58 ~~a~ml~~L~l~~-----g~~VLdIG~GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g 128 (224)
T d1vbfa_ 58 LGIFMLDELDLHK-----GQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLG 128 (224)
T ss_dssp HHHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGC
T ss_pred hHHHHHHHhhhcc-----cceEEEecCCCCHHHHHHHHH-hcccccccccHHHHHHHHHHHhcc---cccccccCchhhc
Confidence 4445677777765 999999999999999999887 679999999999999999887643 5899999998765
Q ss_pred CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEE
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~ 262 (379)
....++||+|++...+.++++ .+.+.|||||+|++.
T Consensus 129 ~~~~~pfD~Iiv~~a~~~ip~------~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 129 YEEEKPYDRVVVWATAPTLLC------KPYEQLKEGGIMILP 164 (224)
T ss_dssp CGGGCCEEEEEESSBBSSCCH------HHHHTEEEEEEEEEE
T ss_pred chhhhhHHHHHhhcchhhhhH------HHHHhcCCCCEEEEE
Confidence 445688999999999888753 456889999999885
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=6.6e-14 Score=124.23 Aligned_cols=137 Identities=14% Similarity=0.176 Sum_probs=105.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
+++..+..... .+.+|||+|||+|..+..++... ..+|+++|+|+.+++.|++++...++ .++.|+.+|..+
T Consensus 97 lv~~~l~~~~~------~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~-~~v~~~~~d~~~ 169 (274)
T d2b3ta1 97 LVEQALARLPE------QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDWFS 169 (274)
T ss_dssp HHHHHHHHSCS------SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCSTTG
T ss_pred hhhhHhhhhcc------cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc-ccceeeeccccc
Confidence 44455554332 36789999999999999999988 78999999999999999999999988 579999999866
Q ss_pred CCCCCCcccEEEeccccC-------------CCCC------------HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCcc
Q 016981 220 QPFPDGQFDLVWSMESGE-------------HMPD------------KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE 274 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~-------------~~~~------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~ 274 (379)
++++++||+|+++=-.. |-+. ..+++.++.++|+|||.+++-- ..
T Consensus 170 -~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi-g~-------- 239 (274)
T d2b3ta1 170 -ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH-GW-------- 239 (274)
T ss_dssp -GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC-CS--------
T ss_pred -ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE-Cc--------
Confidence 44567999999973221 1110 1468888999999999988832 11
Q ss_pred ccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 275 SLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
...+.+.+++++.||..+++
T Consensus 240 ----------------------~q~~~v~~~l~~~gf~~i~~ 259 (274)
T d2b3ta1 240 ----------------------QQGEAVRQAFILAGYHDVET 259 (274)
T ss_dssp ----------------------SCHHHHHHHHHHTTCTTCCE
T ss_pred ----------------------hHHHHHHHHHHHCCCCeEEE
Confidence 12467889999999987654
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.55 E-value=1.7e-14 Score=123.71 Aligned_cols=111 Identities=20% Similarity=0.310 Sum_probs=96.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
+...+++.+.+.+ +.+|||||||+|..+..+++..+.+|+++|.++.+++.|++++...++ .|+.+..+|....
T Consensus 66 ~~a~ml~~L~l~~-----g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~gd~~~g 139 (215)
T d1jg1a_ 66 MVAIMLEIANLKP-----GMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKG 139 (215)
T ss_dssp HHHHHHHHHTCCT-----TCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGC
T ss_pred hHHHHHHhhccCc-----cceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEECccccC
Confidence 5566777777776 999999999999999999987677899999999999999999999887 6999999999876
Q ss_pred CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
....++||.|++...+.++++. +...|||||++++..
T Consensus 140 ~~~~~pfD~Iiv~~a~~~ip~~------l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 140 FPPKAPYDVIIVTAGAPKIPEP------LIEQLKIGGKLIIPV 176 (215)
T ss_dssp CGGGCCEEEEEECSBBSSCCHH------HHHTEEEEEEEEEEE
T ss_pred CcccCcceeEEeecccccCCHH------HHHhcCCCCEEEEEE
Confidence 5567899999999999887643 567899999998754
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.54 E-value=1.6e-14 Score=132.14 Aligned_cols=102 Identities=25% Similarity=0.280 Sum_probs=88.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+++|||||||+|.++..+++....+|+|+|.|+. ...+++....+++.+++.++.+|+.+++++.++||+|++..+.++
T Consensus 34 ~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~ 112 (316)
T d1oria_ 34 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC 112 (316)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred cCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeee
Confidence 8899999999999999999874468999999975 567777888888888999999999999988899999998766665
Q ss_pred C---CCHHHHHHHHHHhcCCCCEEEE
Q 016981 239 M---PDKSKFVSELARVTAPAGTIII 261 (379)
Q Consensus 239 ~---~~~~~~l~~~~r~LkpgG~l~i 261 (379)
+ .....++..+.++|||||.++-
T Consensus 113 l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 113 LFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp BTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 5 3568899999999999999863
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.52 E-value=3.6e-13 Score=118.13 Aligned_cols=160 Identities=18% Similarity=0.159 Sum_probs=109.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
....++....... ...+|||||||+|.++..+++++ +.+++++|+.+. ++. ....+++.+..+|+.+
T Consensus 68 ~~~~~~~~~~~~~----~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~-------~~~~~r~~~~~~d~~~ 135 (243)
T d1kyza2 68 TMKKILETYTGFE----GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IED-------APSYPGVEHVGGDMFV 135 (243)
T ss_dssp HHHHHHHHCCTTS----SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTT-------CCCCTTEEEEECCTTT
T ss_pred HHHHHHHhccccc----CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhh-------cccCCceEEecccccc
Confidence 3445555544322 25789999999999999999999 789999999543 322 2334689999999865
Q ss_pred CCCCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHH--HhhccCCCC
Q 016981 220 QPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK--ICDAYYLPA 295 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 295 (379)
+.|. .|+++..++++..++. ..+|+++++.|+|||+++|.+...+...... ........+.- ...... ..
T Consensus 136 -~~P~--ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~--~~~~~~~~~d~~ml~~~~~-g~ 209 (243)
T d1kyza2 136 -SIPK--ADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSS--LATKGVVHIDVIMLAHNPG-GK 209 (243)
T ss_dssp -CCCC--CSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCC--HHHHHHHHHHHHHHHHCSS-CC
T ss_pred -cCCC--cceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCc--hhhHHHHHHHHHHHhhCCC-CC
Confidence 3332 5778889999988754 6899999999999999999986543322111 11111111111 111111 11
Q ss_pred CCCHHHHHHHHHhCCCceeEEEe
Q 016981 296 WCSTADYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 296 ~~~~~~~~~~l~~aGF~~v~~~~ 318 (379)
-.+.++|+++|++|||+++++..
T Consensus 210 ert~~e~~~ll~~AGf~~vkv~~ 232 (243)
T d1kyza2 210 ERTQKEFEDLAKGAGFQGFKVHC 232 (243)
T ss_dssp CEEHHHHHHHHHHHCCSCEEEEE
T ss_pred cCCHHHHHHHHHHcCCCcEEEEE
Confidence 24799999999999999998753
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.51 E-value=1.2e-13 Score=121.14 Aligned_cols=147 Identities=16% Similarity=0.236 Sum_probs=106.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
..+|||||||+|.++..+++++ +.++++.|+ |..++. .+..++++++.+|+.+. .+ .+|++++.++||
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~-------~~~~~rv~~~~gD~f~~-~p--~aD~~~l~~vLH 149 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVEN-------LSGSNNLTYVGGDMFTS-IP--NADAVLLKYILH 149 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT-------CCCBTTEEEEECCTTTC-CC--CCSEEEEESCGG
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHh-------CcccCceEEEecCcccC-CC--CCcEEEEEeecc
Confidence 5789999999999999999999 789999999 444433 34457999999998763 22 579999999999
Q ss_pred CCCCH--HHHHHHHHHhcCCC---CEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCc
Q 016981 238 HMPDK--SKFVSELARVTAPA---GTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLE 312 (379)
Q Consensus 238 ~~~~~--~~~l~~~~r~Lkpg---G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~ 312 (379)
+.+|. .++|+++++.|+|| |+++|.+...++...... . ......+.-...... ....|.++|+++|+++||+
T Consensus 150 dw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~-~-~~~~~~~dl~m~~~~-G~ert~~e~~~ll~~AGf~ 226 (244)
T d1fp2a2 150 NWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQ-V-TQIKLLMDVNMACLN-GKERNEEEWKKLFIEAGFQ 226 (244)
T ss_dssp GSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHH-H-HHHHHHHHHHGGGGT-CCCEEHHHHHHHHHHTTCC
T ss_pred cCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCch-H-HHHHHHHHHHHHhCC-CcCCCHHHHHHHHHHcCCc
Confidence 99876 58899999999999 889998865443221111 1 111111111111111 1235899999999999999
Q ss_pred eeEEEec
Q 016981 313 DIKAEDW 319 (379)
Q Consensus 313 ~v~~~~~ 319 (379)
++++...
T Consensus 227 ~~~i~~~ 233 (244)
T d1fp2a2 227 HYKISPL 233 (244)
T ss_dssp EEEEEEE
T ss_pred eEEEEEC
Confidence 9987643
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=9e-14 Score=126.81 Aligned_cols=102 Identities=25% Similarity=0.286 Sum_probs=86.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+++|||||||+|.++..+++....+|+|+|.|+.+.. +++.....+..+++.+..+|+.++++++++||+|++..+.++
T Consensus 36 ~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~ 114 (311)
T d2fyta1 36 DKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYF 114 (311)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTT
T ss_pred cCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeeee
Confidence 8899999999999999999874468999999998764 566666777778999999999999888899999999766666
Q ss_pred CC---CHHHHHHHHHHhcCCCCEEEE
Q 016981 239 MP---DKSKFVSELARVTAPAGTIII 261 (379)
Q Consensus 239 ~~---~~~~~l~~~~r~LkpgG~l~i 261 (379)
+. ....++....++|||||.++-
T Consensus 115 ~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 115 LLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp BTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred cccccccHHHHHHHHhcCCCCcEEec
Confidence 53 246778888899999999874
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.47 E-value=2.7e-13 Score=119.79 Aligned_cols=128 Identities=16% Similarity=0.086 Sum_probs=102.8
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
++.+|||+|||+|.++..++++.+++|+++|+++.+++.++++++.+++.+++.++++|+.+++. .+.||.|++..
T Consensus 107 ~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~--- 182 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGY--- 182 (260)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECC---
T ss_pred CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEEECC---
Confidence 38999999999999999999875579999999999999999999999998889999999988753 57899998652
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcee
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 314 (379)
.+....++.++.+.|+|||++.+..+....... -...+.+.++.+..||++.
T Consensus 183 -p~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~------------------------~~~~e~~~~~~~~~g~~v~ 234 (260)
T d2frna1 183 -VVRTHEFIPKALSIAKDGAIIHYHNTVPEKLMP------------------------REPFETFKRITKEYGYDVE 234 (260)
T ss_dssp -CSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTT------------------------TTTHHHHHHHHHHTTCEEE
T ss_pred -CCchHHHHHHHHhhcCCCCEEEEEeccccccch------------------------hhHHHHHHHHHHHcCCceE
Confidence 234467888999999999999877654321100 0135667788889999764
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.44 E-value=1.1e-13 Score=129.01 Aligned_cols=119 Identities=14% Similarity=0.126 Sum_probs=90.3
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcC-------C-CCC
Q 016981 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARG-------L-ADK 209 (379)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~-------~-~~~ 209 (379)
...+.++++.+++.+ +++|||||||+|.++..++..++ ++|+|+|+|+.|++.|+++.+..+ . ...
T Consensus 202 ~~~i~~Il~~l~Lkp-----gd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~ 276 (406)
T d1u2za_ 202 PNFLSDVYQQCQLKK-----GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNN 276 (406)
T ss_dssp HHHHHHHHHHTTCCT-----TCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCC
T ss_pred HHHHHHHHHHhCCCC-----CCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccc
Confidence 446788888888876 99999999999999999999885 489999999999999999876532 1 122
Q ss_pred eEE-EEccCCCCCCC---CCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 210 VSF-QVGDALQQPFP---DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 210 i~~-~~~d~~~~~~~---~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.+ ..++....+.. -..+|+|+++. +.|.++....|.++++.|||||+++..+
T Consensus 277 ~~~~~~~~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 277 VEFSLKKSFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp EEEEESSCSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ceeeeeechhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence 333 23444332211 13467887654 5677888999999999999999998865
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.41 E-value=2.9e-13 Score=116.72 Aligned_cols=111 Identities=18% Similarity=0.266 Sum_probs=89.0
Q ss_pred HHHHHHHHc--CCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC-------CEEEEEeCCHHHHHHHHHHHHHc-----CC
Q 016981 141 MIEETLRFA--GVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-------AKCQGITLSPVQAQRANALAAAR-----GL 206 (379)
Q Consensus 141 ~~~~~l~~~--~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~-------~~v~gvD~s~~~~~~a~~~~~~~-----~~ 206 (379)
+...+++.+ .+. ++.+|||||||+|..+..+++..+ .+|+++|.++.+++.|++++... +.
T Consensus 66 ~~a~~l~~L~~~l~-----~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~ 140 (223)
T d1r18a_ 66 MHAFALEYLRDHLK-----PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDS 140 (223)
T ss_dssp HHHHHHHHTTTTCC-----TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhccC-----CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCc
Confidence 445566665 344 389999999999999988887642 48999999999999999886542 22
Q ss_pred CCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 207 ADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 207 ~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.|+.+..+|......+.++||.|++...+.++++ .+.+.|||||++++..
T Consensus 141 -~nv~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 141 -GQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPT------ELINQLASGGRLIVPV 190 (223)
T ss_dssp -TSEEEEESCGGGCCGGGCSEEEEEECSCBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred -cEEEEEecccccccccccceeeEEEEeechhchH------HHHHhcCCCcEEEEEE
Confidence 4899999998887656789999999999988864 4678999999998854
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.37 E-value=9.5e-13 Score=120.30 Aligned_cols=107 Identities=21% Similarity=0.184 Sum_probs=87.2
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC----CCCCCcccEEEec
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVWSM 233 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~V~~~ 233 (379)
++.+|||+|||+|.++..++.....+|+++|+|+.+++.|++++..+|+.+++++.++|+.+. +....+||+|++.
T Consensus 145 ~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~D 224 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 224 (324)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhcC
Confidence 389999999999999999988744589999999999999999999999988899999998653 2345789999975
Q ss_pred cccCCC--C-------CHHHHHHHHHHhcCCCCEEEEEec
Q 016981 234 ESGEHM--P-------DKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 234 ~~l~~~--~-------~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
-.-... . +..+++..+.++|||||+|+++..
T Consensus 225 pP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~ 264 (324)
T d2as0a2 225 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 264 (324)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 322111 1 124578888999999999999873
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=8.3e-11 Score=103.00 Aligned_cols=81 Identities=11% Similarity=0.024 Sum_probs=68.1
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC------CCCCcccEE
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~fD~V 230 (379)
+..+|||+|||+|..+..++.+. +.+++|+|+|+.+++.|+++++.+++..++.+...+....- ..+++||+|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence 45799999999999999999887 88999999999999999999999999888998876654321 235689999
Q ss_pred EeccccCC
Q 016981 231 WSMESGEH 238 (379)
Q Consensus 231 ~~~~~l~~ 238 (379)
+|+=-+..
T Consensus 141 vsNPPY~~ 148 (250)
T d2h00a1 141 MCNPPFFA 148 (250)
T ss_dssp EECCCCC-
T ss_pred EecCcccc
Confidence 99866554
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.34 E-value=1.9e-12 Score=117.80 Aligned_cols=104 Identities=18% Similarity=0.116 Sum_probs=85.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC----CCCCCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~V~~~~ 234 (379)
+.+|||++||+|.++..++.. +.+|+++|+|+.+++.|+++++.+|+ .++.++.+|+.+. +...++||+|++.-
T Consensus 146 g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl-~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 146 GERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGL-GNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp EEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCC-CCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 889999999999999998864 67999999999999999999999998 5899999998663 33457899999753
Q ss_pred ccCCC--C-------CHHHHHHHHHHhcCCCCEEEEEec
Q 016981 235 SGEHM--P-------DKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 235 ~l~~~--~-------~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
--... . +..+++..+.++|||||.|+++..
T Consensus 224 P~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 224 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 22111 1 124678889999999999988763
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.32 E-value=1.7e-12 Score=109.05 Aligned_cols=118 Identities=19% Similarity=0.294 Sum_probs=96.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
+++++++.+...+ +..+||++||+|..+..+++.+ +++|+|+|.++.|++.|+++++..+ .++.++.+++.+
T Consensus 11 ll~evi~~l~~~~-----~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~ 83 (192)
T d1m6ya2 11 MVREVIEFLKPED-----EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYRE 83 (192)
T ss_dssp THHHHHHHHCCCT-----TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGG
T ss_pred HHHHHHHhhCCCC-----CCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhh
Confidence 6778888877655 8999999999999999999987 7899999999999999999987654 589999999876
Q ss_pred C-----CCCCCcccEEEeccccCC---------CCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 220 Q-----PFPDGQFDLVWSMESGEH---------MPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 220 ~-----~~~~~~fD~V~~~~~l~~---------~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+ .+..++||.|+.-..+.. +......|..+.++|+|||.+++..+.
T Consensus 84 ~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~ 143 (192)
T d1m6ya2 84 ADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH 143 (192)
T ss_dssp HHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred HHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence 4 244678999987654421 223367899999999999999998753
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.29 E-value=2.4e-12 Score=104.43 Aligned_cols=105 Identities=13% Similarity=0.072 Sum_probs=83.5
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~V~~~~~l 236 (379)
.+.+|||+|||||.++..++.+...+|+++|.++.+++.++++++..++.+++.++.+|+... ....++||+|++.-.
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP- 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP- 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS-
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh-
Confidence 388999999999999999888754699999999999999999999998888899999998764 445688999987421
Q ss_pred CCCCCHHHHHHHHH--HhcCCCCEEEEEe
Q 016981 237 EHMPDKSKFVSELA--RVTAPAGTIIIVT 263 (379)
Q Consensus 237 ~~~~~~~~~l~~~~--r~LkpgG~l~i~~ 263 (379)
+.-......+..+. +.|+|||.+++..
T Consensus 93 y~~~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 93 YAKETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp SHHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hccchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 11112245566554 5799999988754
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.22 E-value=1.6e-11 Score=105.11 Aligned_cols=119 Identities=18% Similarity=0.277 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE
Q 016981 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213 (379)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~ 213 (379)
...-+++..+++... +.+|||+|||+|..+..+++.+ +++|+++|+++.+.+.|++++...|+.++++++
T Consensus 42 ~~~G~lL~~lv~~~k--------pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~ 113 (214)
T d2cl5a1 42 DAKGQIMDAVIREYS--------PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTIL 113 (214)
T ss_dssp HHHHHHHHHHHHHHC--------CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEE
T ss_pred HHHHHHHHHHHHhhC--------CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceee
Confidence 344557777777654 7899999999999999999876 579999999999999999999999998889999
Q ss_pred EccCCCC-C-----CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 214 VGDALQQ-P-----FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 214 ~~d~~~~-~-----~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.+|..+. + +..++||+|+.-+.-... .....+.+..++|||||.+++-+
T Consensus 114 ~Gd~~e~l~~l~~~~~~~~~D~ifiD~~~~~~-~~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 114 NGASQDLIPQLKKKYDVDTLDMVFLDHWKDRY-LPDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp ESCHHHHGGGHHHHSCCCCEEEEEECSCGGGH-HHHHHHHHHTTCEEEEEEEEESC
T ss_pred eccccccccchhhcccccccceeeeccccccc-ccHHHHHHHhCccCCCcEEEEeC
Confidence 9998663 2 345689999875321110 11334777889999999876644
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.21 E-value=2.6e-11 Score=108.61 Aligned_cols=105 Identities=15% Similarity=0.175 Sum_probs=82.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEccCCCC----CCCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQQ----PFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~----~~~~~~fD~V~~~ 233 (379)
+.+|||+.||||.++..++.. |++|++||.|+.+++.|++++..+++.+ +++|+++|+.+. ......||+|++.
T Consensus 133 ~~rVLdlf~~tG~~sl~aa~~-GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilD 211 (309)
T d2igta1 133 PLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD 211 (309)
T ss_dssp CCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred CCeEEEecCCCcHHHHHHHhC-CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEEC
Confidence 789999999999999999876 7899999999999999999999988764 699999998663 1235789999973
Q ss_pred c---ccC------CC-CCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 234 E---SGE------HM-PDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 234 ~---~l~------~~-~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
= .-. .+ .+...++..+.++|+|||.+++...
T Consensus 212 PP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~ 252 (309)
T d2igta1 212 PPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 252 (309)
T ss_dssp CCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred CCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence 1 111 11 1235567788899999998777664
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=7.2e-11 Score=101.12 Aligned_cols=117 Identities=16% Similarity=0.223 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 016981 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (379)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~ 215 (379)
+-+++..+++..+ +++|||||||+|..+..+++.. +++++.+|.++...+.|++++...|+.+++++..+
T Consensus 47 ~g~lL~~L~~~~~--------~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~G 118 (219)
T d2avda1 47 QAQLLANLARLIQ--------AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLK 118 (219)
T ss_dssp HHHHHHHHHHHTT--------CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEES
T ss_pred HHHHHHHHHHccC--------CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEe
Confidence 3445666666543 7899999999999999999876 57999999999999999999999999889999999
Q ss_pred cCCCC-C-----CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 216 DALQQ-P-----FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 216 d~~~~-~-----~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
|+.+. + ...++||+|+...-- .+....+..+.++|+|||.+++-+..
T Consensus 119 da~e~l~~~~~~~~~~~fD~ifiD~dk---~~y~~~~~~~~~lL~~GGvii~Dn~l 171 (219)
T d2avda1 119 PALETLDELLAAGEAGTFDVAVVDADK---ENCSAYYERCLQLLRPGGILAVLRVL 171 (219)
T ss_dssp CHHHHHHHHHHTTCTTCEEEEEECSCS---TTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred ehhhcchhhhhhcccCCccEEEEeCCH---HHHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 97552 1 235789999976322 34477889999999999999997654
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.17 E-value=2.5e-11 Score=110.02 Aligned_cols=105 Identities=16% Similarity=0.066 Sum_probs=84.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEccCCCC----CCCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQ----PFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~----~~~~~~fD~V~~~ 233 (379)
+.+|||+.||+|.++..++.....+|+++|+|+.+++.++++++.+++. .+++++.+|+.+. ....++||+|++.
T Consensus 145 g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~D 224 (317)
T d2b78a2 145 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIID 224 (317)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEEc
Confidence 8899999999999999888753458999999999999999999999884 5799999998653 1235689999974
Q ss_pred cc-c----CCC----CCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 234 ES-G----EHM----PDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 234 ~~-l----~~~----~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
=- + ... .+..++++.+.++|+|||.|+++.
T Consensus 225 PP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~s 263 (317)
T d2b78a2 225 PPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST 263 (317)
T ss_dssp CCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 21 0 111 133578889999999999999876
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.16 E-value=7.4e-11 Score=99.32 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=75.5
Q ss_pred CCEEEEeCCcccHH----HHHHHHHc-----CCEEEEEeCCHHHHHHHHHHH--------------HH----cCC-----
Q 016981 159 PKNVVDVGCGIGGS----SRYLAKKF-----GAKCQGITLSPVQAQRANALA--------------AA----RGL----- 206 (379)
Q Consensus 159 ~~~vLDiGcGtG~~----~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~--------------~~----~~~----- 206 (379)
..+|+++|||||.- ++.+.+.. ..+++|+|+|+.+++.|++-. .. .+.
T Consensus 25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~ 104 (193)
T d1af7a2 25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 104 (193)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccce
Confidence 67999999999984 44444432 137999999999999997421 10 000
Q ss_pred -------CCCeEEEEccCCCC-CCCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEE
Q 016981 207 -------ADKVSFQVGDALQQ-PFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 207 -------~~~i~~~~~d~~~~-~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~ 262 (379)
-..+.+...+.... +.+.+.||+|+|.++|.+++.. .++++++++.|+|||+|++.
T Consensus 105 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 105 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 01245555555443 2345789999999999999765 78999999999999998874
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.16 E-value=2.2e-11 Score=100.61 Aligned_cols=102 Identities=15% Similarity=0.165 Sum_probs=74.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC--CCCCCCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QPFPDGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~fD~V~~~~~l 236 (379)
+.+|||+|||+|.++..++.+ |++++++|.++.+++.++++++..++..++....+|... ......+||+|++.=-.
T Consensus 42 g~~vLDl~~G~G~~~i~a~~~-ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPPY 120 (171)
T d1ws6a1 42 RGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPY 120 (171)
T ss_dssp CCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCT
T ss_pred CCeEEEeccccchhhhhhhhc-cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEcccc
Confidence 789999999999999998887 789999999999999999999998886555444444211 12345789999975322
Q ss_pred CCCCCHHHHHHHH--HHhcCCCCEEEEEe
Q 016981 237 EHMPDKSKFVSEL--ARVTAPAGTIIIVT 263 (379)
Q Consensus 237 ~~~~~~~~~l~~~--~r~LkpgG~l~i~~ 263 (379)
+. +....+.++ ..+|+|||.+++..
T Consensus 121 -~~-~~~~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 121 -AM-DLAALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp -TS-CTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred -cc-CHHHHHHHHHHcCCcCCCeEEEEEe
Confidence 22 223344444 35799999888754
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.12 E-value=1.5e-10 Score=97.19 Aligned_cols=69 Identities=19% Similarity=0.169 Sum_probs=59.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
+++|||+|||+|.++..++.....+|+|+|+++.+++.|++++ .++.+.++|+.+++ ++||+|+++=-+
T Consensus 49 Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~------~~~~~~~~D~~~l~---~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 49 GRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC------GGVNFMVADVSEIS---GKYDTWIMNPPF 117 (197)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC------TTSEEEECCGGGCC---CCEEEEEECCCC
T ss_pred CCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc------ccccEEEEehhhcC---CcceEEEeCccc
Confidence 8999999999999998888764468999999999999999875 47899999998764 789999987544
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.11 E-value=2.4e-09 Score=94.19 Aligned_cols=104 Identities=19% Similarity=0.211 Sum_probs=79.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CCCCCcccEEEeccc--
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMES-- 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~V~~~~~-- 235 (379)
..+|||+|||+|..+..+++.-.++|+++|+|+.+++.|+++++..++..++.+..+|..+. +...++||+|+++=-
T Consensus 111 ~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI 190 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYV 190 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCB
T ss_pred ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEccccc
Confidence 56899999999999999887557899999999999999999999999887888888887664 333478999998721
Q ss_pred -----cCCC--CCH----------HHHHHH-HHHhcCCCCEEEEE
Q 016981 236 -----GEHM--PDK----------SKFVSE-LARVTAPAGTIIIV 262 (379)
Q Consensus 236 -----l~~~--~~~----------~~~l~~-~~r~LkpgG~l~i~ 262 (379)
+... -+| -.++++ +.+.|+|||++++-
T Consensus 191 ~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~E 235 (271)
T d1nv8a_ 191 KSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 235 (271)
T ss_dssp CGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred CcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEE
Confidence 1000 011 123333 45789999987764
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.10 E-value=3.2e-10 Score=95.92 Aligned_cols=75 Identities=16% Similarity=0.032 Sum_probs=63.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++..++.+...+|+|+|+++.+++.++++++..+. +..+...|+..+ +++||+|+++--...
T Consensus 47 g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d~~~~---~~~fD~Vi~nPP~~~ 121 (201)
T d1wy7a1 47 GKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEF---NSRVDIVIMNPPFGS 121 (201)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGC---CCCCSEEEECCCCSS
T ss_pred CCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECchhhh---CCcCcEEEEcCcccc
Confidence 889999999999999988876445899999999999999999888764 688999998775 467999998765543
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.07 E-value=6.9e-10 Score=95.28 Aligned_cols=115 Identities=17% Similarity=0.222 Sum_probs=94.6
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 016981 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (379)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d 216 (379)
-+++..+++..+ +.+|||+|+++|..+..+++.. +++++.+|.++...+.|++.+...|+.++++++.+|
T Consensus 48 g~~L~~L~~~~~--------~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~ 119 (227)
T d1susa1 48 GQFLSMLLKLIN--------AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGP 119 (227)
T ss_dssp HHHHHHHHHHHT--------CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESC
T ss_pred HHHHHHHHHhcC--------CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehH
Confidence 345555665543 7899999999999999999876 579999999999999999999999998899999999
Q ss_pred CCCC-C------CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 217 ALQQ-P------FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 217 ~~~~-~------~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+.+. + ...++||+|+.-.-= ......+..+.++|+|||.+++-+.
T Consensus 120 a~~~L~~l~~~~~~~~~fD~iFiDa~k---~~y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 120 ALPVLDEMIKDEKNHGSYDFIFVDADK---DNYLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp HHHHHHHHHHCGGGTTCBSEEEECSCS---TTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred HHHHHHHHHhccccCCceeEEEeccch---hhhHHHHHHHHhhcCCCcEEEEccC
Confidence 8653 2 124689999976322 3457889999999999999988764
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=2e-09 Score=89.56 Aligned_cols=103 Identities=12% Similarity=0.033 Sum_probs=83.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||++||||.++..++.+...+|+.||.++.+++.++++++..+. .++.++..|+.+. .....+||+|++.=-..
T Consensus 44 ~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~-~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~ 122 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 122 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred hhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc-cceeeeeecccccccccccccCEEEEcCccc
Confidence 789999999999999999988555899999999999999999988776 5789999997664 34467899999864322
Q ss_pred CCCCHHHHHHHHHH--hcCCCCEEEEEe
Q 016981 238 HMPDKSKFVSELAR--VTAPAGTIIIVT 263 (379)
Q Consensus 238 ~~~~~~~~l~~~~r--~LkpgG~l~i~~ 263 (379)
-.....++..+.+ +|+|+|.+++..
T Consensus 123 -~~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 123 -RGLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp -TTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred -cchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 2345677777765 699999988854
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.97 E-value=1.4e-09 Score=90.32 Aligned_cols=105 Identities=16% Similarity=0.047 Sum_probs=84.3
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C---CCCCcccEEEec
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P---FPDGQFDLVWSM 233 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~---~~~~~fD~V~~~ 233 (379)
.+.+|||++||+|.++..++.+...+|+++|.++.+++.++++++..+...++.+..+|+.+. . -...+||+|++.
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflD 120 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD 120 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEec
Confidence 389999999999999999999855589999999999999999999888877899999998653 1 234679999875
Q ss_pred cccCCCCCHHHHHHHHHH--hcCCCCEEEEEe
Q 016981 234 ESGEHMPDKSKFVSELAR--VTAPAGTIIIVT 263 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r--~LkpgG~l~i~~ 263 (379)
=- +...+....+..+.. .|+|||.+++..
T Consensus 121 PP-Y~~~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 121 PP-YAKQEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp CC-GGGCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hh-hhhhHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 32 123445777888764 699999887643
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=1.1e-07 Score=87.28 Aligned_cols=118 Identities=19% Similarity=0.340 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 016981 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (379)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~ 214 (379)
......+++.+++.+.... +.+|||+-||+|.++..|++. +.+|+|+|.++.+++.|+++++.+++ .|+.|+.
T Consensus 194 ~~~~e~l~~~v~~~~~~~~-----~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n~i-~n~~~~~ 266 (358)
T d1uwva2 194 AGVNQKMVARALEWLDVQP-----EDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGL-QNVTFYH 266 (358)
T ss_dssp HHHHHHHHHHHHHHHTCCT-----TCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEE
T ss_pred hhhhhHHHHHHHHhhccCC-----CceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhccc-ccceeee
Confidence 4556677888888877654 889999999999999999987 67999999999999999999999998 5899999
Q ss_pred ccCCCC-C---CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 215 GDALQQ-P---FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 215 ~d~~~~-~---~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+|.++. . .....||+|+..=-=.- ...++..+.+. +|.-.++++-
T Consensus 267 ~~~~~~~~~~~~~~~~~d~vilDPPR~G---~~~~~~~l~~~-~~~~ivYVSC 315 (358)
T d1uwva2 267 ENLEEDVTKQPWAKNGFDKVLLDPARAG---AAGVMQQIIKL-EPIRIVYVSC 315 (358)
T ss_dssp CCTTSCCSSSGGGTTCCSEEEECCCTTC---CHHHHHHHHHH-CCSEEEEEES
T ss_pred cchhhhhhhhhhhhccCceEEeCCCCcc---HHHHHHHHHHc-CCCEEEEEeC
Confidence 998763 2 23467999986311111 14567777664 6766666653
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.81 E-value=7.9e-09 Score=89.08 Aligned_cols=90 Identities=17% Similarity=0.223 Sum_probs=71.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
..++++++.+.+.. +++|||||||+|.++..|++. +.+|+++|+++.+++.+++++... +++.++.+|+.+
T Consensus 8 ~i~~~iv~~~~~~~-----~d~VlEIGpG~G~LT~~Ll~~-~~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~ 78 (235)
T d1qama_ 8 HNIDKIMTNIRLNE-----HDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQ 78 (235)
T ss_dssp HHHHHHHTTCCCCT-----TCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGG
T ss_pred HHHHHHHHhcCCCC-----CCeEEEECCCchHHHHHHHhC-cCceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhh
Confidence 36677777777665 999999999999999999987 789999999999999999876432 589999999999
Q ss_pred CCCCCCcccEEEeccccCCC
Q 016981 220 QPFPDGQFDLVWSMESGEHM 239 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~ 239 (379)
.+++......|+++ .-+++
T Consensus 79 ~~~~~~~~~~vv~N-LPYnI 97 (235)
T d1qama_ 79 FKFPKNQSYKIFGN-IPYNI 97 (235)
T ss_dssp CCCCSSCCCEEEEE-CCGGG
T ss_pred ccccccccceeeee-ehhhh
Confidence 87665444445543 33444
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=4.5e-08 Score=82.30 Aligned_cols=99 Identities=16% Similarity=0.100 Sum_probs=86.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+|+|+|+|.|..+..++-.+ ..+++.+|.+..-+...++.....++ .|+.++...+++... ..+||+|+++.+
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~~~~-~~~fD~V~sRA~-- 141 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL-ENIEPVQSRVEEFPS-EPPFDGVISRAF-- 141 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-SSEEEEECCTTTSCC-CSCEEEEECSCS--
T ss_pred CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC-cceeeeccchhhhcc-ccccceehhhhh--
Confidence 6799999999999999999876 67999999999999999999999888 589999999988753 468999998744
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.....++.-+...+++||.+++.-
T Consensus 142 --~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 142 --ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp --SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred --cCHHHHHHHHHHhcCCCcEEEEEC
Confidence 556889999999999999988864
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.72 E-value=7.3e-09 Score=91.63 Aligned_cols=104 Identities=16% Similarity=0.246 Sum_probs=80.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc---------CCCCCeEEEEccCCCCCCCCCcccE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR---------GLADKVSFQVGDALQQPFPDGQFDL 229 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~---------~~~~~i~~~~~d~~~~~~~~~~fD~ 229 (379)
+.+||.+|+|.|..+..+.+....+|+.+|+++.+++.|++.+... ...++++++.+|+...--.+++||+
T Consensus 73 p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~yDv 152 (276)
T d1mjfa_ 73 PKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFDV 152 (276)
T ss_dssp CCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCEEE
T ss_pred CceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCCCE
Confidence 7899999999999999988754568999999999999999865321 1246899999998654223578999
Q ss_pred EEeccccCCCCC-----HHHHHHHHHHhcCCCCEEEEEe
Q 016981 230 VWSMESGEHMPD-----KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 230 V~~~~~l~~~~~-----~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|++-.. ..... ..++++.+++.|+|||.+++..
T Consensus 153 Ii~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 153 IIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp EEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 996433 22211 1689999999999999988754
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.66 E-value=1.3e-08 Score=91.47 Aligned_cols=105 Identities=19% Similarity=0.186 Sum_probs=81.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc--C--CCCCeEEEEccCCCC-CCCCCcccEEEe
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR--G--LADKVSFQVGDALQQ-PFPDGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--~--~~~~i~~~~~d~~~~-~~~~~~fD~V~~ 232 (379)
+++||.||.|.|..+..+++.. ..+|+++|+++.+++.|++.+... + -.++++++.+|+... .-.+++||+|++
T Consensus 78 pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~ 157 (312)
T d1uira_ 78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVII 157 (312)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred cceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEEE
Confidence 7899999999999999998765 569999999999999999987432 1 136899999998764 223578999995
Q ss_pred ccccCCC-CC------HHHHHHHHHHhcCCCCEEEEEe
Q 016981 233 MESGEHM-PD------KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 233 ~~~l~~~-~~------~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
-..=.+. .. ..++++.+++.|+|||.+++..
T Consensus 158 D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 158 DLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp ECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred eCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 4321111 11 1689999999999999988754
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.65 E-value=3.7e-09 Score=91.71 Aligned_cols=91 Identities=20% Similarity=0.256 Sum_probs=74.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
.++++++.+.+.+ +.+|||||||+|.++..|++. +.+|+++|+++.+++.+++++.. .+++.++.+|+.+.
T Consensus 17 ii~kIv~~~~~~~-----~d~VLEIGpG~G~LT~~L~~~-~~~v~aIE~D~~l~~~l~~~~~~---~~n~~ii~~D~l~~ 87 (245)
T d1yuba_ 17 VLNQIIKQLNLKE-----TDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLKL---NTRVTLIHQDILQF 87 (245)
T ss_dssp THHHHHHHCCCCS-----SEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTTT---CSEEEECCSCCTTT
T ss_pred HHHHHHHhcCCCC-----CCeEEEECCCccHHHHHHHhh-cCceeEeeecccchhhhhhhhhh---ccchhhhhhhhhcc
Confidence 5677888877765 899999999999999999998 78999999999999888776532 25899999999998
Q ss_pred CCCCCcccEEEeccccCCCCC
Q 016981 221 PFPDGQFDLVWSMESGEHMPD 241 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~ 241 (379)
+++...++.|+++.- +|+..
T Consensus 88 ~~~~~~~~~vv~NLP-Y~Ist 107 (245)
T d1yuba_ 88 QFPNKQRYKIVGNIP-YHLST 107 (245)
T ss_dssp TCCCSSEEEEEEECC-SSSCH
T ss_pred ccccceeeeEeeeee-hhhhH
Confidence 887777776765544 56654
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.64 E-value=1.5e-07 Score=85.35 Aligned_cols=103 Identities=18% Similarity=0.223 Sum_probs=79.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEe
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF------GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~ 232 (379)
+.+|||.|||+|.++..+.++. ...++|+|+++.++..|+.+....+. +..+...|..... +..+||+|++
T Consensus 118 ~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-~~~~fD~vi~ 194 (328)
T d2f8la1 118 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANL-LVDPVDVVIS 194 (328)
T ss_dssp EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCC-CCCCEEEEEE
T ss_pred CCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh--hhhhhcccccccc-cccccccccc
Confidence 7899999999999998887654 23799999999999999988877664 5667777765432 3578999999
Q ss_pred ccccCCCCCH------------------HHHHHHHHHhcCCCCEEEEEec
Q 016981 233 MESGEHMPDK------------------SKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 233 ~~~l~~~~~~------------------~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+--+...... ..++..+.+.|+|||++++...
T Consensus 195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 8655322111 2468999999999999888763
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.64 E-value=5.4e-08 Score=80.21 Aligned_cols=113 Identities=20% Similarity=0.327 Sum_probs=89.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
+++++++.+...+ +..++|..+|.|..+..+.+. +++|+|+|.++.++..|++. ..+++.+++.++.++
T Consensus 6 ll~Evl~~l~~~~-----g~~~vD~T~G~GGhs~~iL~~-~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~ 74 (182)
T d1wg8a2 6 LYQEALDLLAVRP-----GGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHL 74 (182)
T ss_dssp THHHHHHHHTCCT-----TCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGH
T ss_pred HHHHHHHhcCCCC-----CCEEEEeCCCCcHHHHHHhcc-cCcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHH
Confidence 5677788776655 999999999999999999987 67999999999999998864 236899999888764
Q ss_pred C-----CCCCcccEEEeccccCCC--CC-------HHHHHHHHHHhcCCCCEEEEEec
Q 016981 221 P-----FPDGQFDLVWSMESGEHM--PD-------KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 221 ~-----~~~~~fD~V~~~~~l~~~--~~-------~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
. +..+.+|.|+....+... .+ ....|......|+|||.+++..+
T Consensus 75 ~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 75 KRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp HHHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 2 334679999976544322 22 24578888999999999999874
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.57 E-value=4.8e-08 Score=86.63 Aligned_cols=105 Identities=15% Similarity=0.128 Sum_probs=80.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC---CCCCeEEEEccCCCC-CCCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG---LADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~-~~~~~~fD~V~~~ 233 (379)
+.+||-||.|.|..+..+++.. ..+|+++|+++.+++.+++.+.... -.++++++.+|+... .-.+++||+|++-
T Consensus 90 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D 169 (295)
T d1inla_ 90 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIID 169 (295)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEE
T ss_pred CceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEEc
Confidence 7899999999999999999865 4689999999999999998765421 136899999998663 2235789999965
Q ss_pred cccCC-CC----CHHHHHHHHHHhcCCCCEEEEEe
Q 016981 234 ESGEH-MP----DKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 234 ~~l~~-~~----~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
..-.. .+ -..++++.+++.|+|||.+++..
T Consensus 170 ~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~ 204 (295)
T d1inla_ 170 STDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 204 (295)
T ss_dssp C----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence 32221 11 12789999999999999998865
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.57 E-value=2.9e-07 Score=76.07 Aligned_cols=104 Identities=17% Similarity=0.131 Sum_probs=79.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEccCCC---CCCCCCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQ---QPFPDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~---~~~~~~~fD~V~~~~ 234 (379)
+.+|||+-||||.++.+.+.+....|+.||.+...++..+++++..+... ...+...|+.+ ......+||+|++.=
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDP 123 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP 123 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred cceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEech
Confidence 78999999999999999999865699999999999999999999887644 45666666543 223356799998753
Q ss_pred ccCCCCCHHHHHHHHHH--hcCCCCEEEEEe
Q 016981 235 SGEHMPDKSKFVSELAR--VTAPAGTIIIVT 263 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r--~LkpgG~l~i~~ 263 (379)
-. .......++..+.. +|+++|.+++..
T Consensus 124 PY-~~~~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 124 PF-HFNLAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp CS-SSCHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hH-hhhhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence 32 22334677777754 799999888854
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.57 E-value=2.7e-07 Score=78.95 Aligned_cols=133 Identities=15% Similarity=0.103 Sum_probs=103.5
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC---CCCcccEEEec
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF---PDGQFDLVWSM 233 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~fD~V~~~ 233 (379)
...+|+|||+|.|.-++.++-.. ..+++-+|.+..-+.+.+......++ .|+.++...++.... ..++||+|+++
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L-~n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL-ENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC-SSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC-CCcEEEeehhhhccccccccccceEEEEh
Confidence 36799999999999999998766 78999999999999999998888888 589998888876532 13689999998
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCce
Q 016981 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLED 313 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 313 (379)
. +.....++.-+...+++||.+++.---. . .. ..++.++.+...|++.
T Consensus 149 A----va~l~~ll~~~~~~l~~~g~~i~~KG~~---------~----~~---------------El~~a~~~~~~~~~~~ 196 (239)
T d1xdza_ 149 A----VARLSVLSELCLPLVKKNGLFVALKAAS---------A----EE---------------ELNAGKKAITTLGGEL 196 (239)
T ss_dssp C----CSCHHHHHHHHGGGEEEEEEEEEEECC----------C----HH---------------HHHHHHHHHHHTTEEE
T ss_pred h----hhCHHHHHHHHhhhcccCCEEEEECCCC---------h----HH---------------HHHHHHHHHHHcCCEE
Confidence 4 4566889999999999999988864100 0 00 1334556778889988
Q ss_pred eEEEecCCCc
Q 016981 314 IKAEDWSQNV 323 (379)
Q Consensus 314 v~~~~~~~~~ 323 (379)
..+..+..+.
T Consensus 197 ~~v~~~~lp~ 206 (239)
T d1xdza_ 197 ENIHSFKLPI 206 (239)
T ss_dssp EEEEEEECTT
T ss_pred EEEEEEeCCC
Confidence 8877766543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.53 E-value=8.8e-08 Score=84.93 Aligned_cols=105 Identities=20% Similarity=0.284 Sum_probs=81.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc---CCCCCeEEEEccCCCC--CCCCCcccEEEe
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR---GLADKVSFQVGDALQQ--PFPDGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~---~~~~~i~~~~~d~~~~--~~~~~~fD~V~~ 232 (379)
+.+||-||.|.|..++.+.+.. ..+++++|+++.+++.+++.+... .-.++++++.+|.... ...+++||+|+.
T Consensus 81 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi~ 160 (290)
T d1xj5a_ 81 PKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIV 160 (290)
T ss_dssp CCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEE
T ss_pred CcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEEE
Confidence 7899999999999999999865 368999999999999999976431 1246899999997653 234568999996
Q ss_pred ccccCCC-CC---HHHHHHHHHHhcCCCCEEEEEe
Q 016981 233 MESGEHM-PD---KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 233 ~~~l~~~-~~---~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
-..-..- +. ..++++.+++.|+|||.+++..
T Consensus 161 D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 161 DSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp CCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 4332111 11 1789999999999999999865
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.52 E-value=1.2e-07 Score=83.38 Aligned_cols=105 Identities=20% Similarity=0.274 Sum_probs=82.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc-C--CCCCeEEEEccCCCC-CCCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR-G--LADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~-~--~~~~i~~~~~d~~~~-~~~~~~fD~V~~~ 233 (379)
+.+||-||.|.|..+..+.+.. ..+|+.+|+++..++.|++.+... + -.++++++.+|+... .-.+++||+|+.-
T Consensus 76 p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~D 155 (274)
T d1iy9a_ 76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVD 155 (274)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEES
T ss_pred cceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEEc
Confidence 7899999999999999999865 469999999999999999987532 1 246899999998663 2235789999965
Q ss_pred cccCCC--CC--HHHHHHHHHHhcCCCCEEEEEe
Q 016981 234 ESGEHM--PD--KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 234 ~~l~~~--~~--~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
..-..- .. ..++++.+.+.|+|||.++...
T Consensus 156 ~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 156 STEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp CSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 322111 11 2689999999999999988764
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.50 E-value=3.6e-07 Score=77.69 Aligned_cols=108 Identities=17% Similarity=0.266 Sum_probs=78.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
+.+.+++.+.... +.+|||.|||+|.++..+.+.. ...++|+|+++..+.. ..+..+..+|..
T Consensus 7 i~~~m~~l~~~~~-----~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~----------~~~~~~~~~~~~ 71 (223)
T d2ih2a1 7 VVDFMVSLAEAPR-----GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL----------PPWAEGILADFL 71 (223)
T ss_dssp HHHHHHHHCCCCT-----TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC----------CTTEEEEESCGG
T ss_pred HHHHHHHhcCCCC-----cCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh----------cccceeeeeehh
Confidence 4445566655443 8899999999999998888765 4679999999865432 235677888876
Q ss_pred CCCCCCCcccEEEeccccCCCC----------------------------C-HHHHHHHHHHhcCCCCEEEEEec
Q 016981 219 QQPFPDGQFDLVWSMESGEHMP----------------------------D-KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~----------------------------~-~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
... ....||+|+++-...... + ...++..+.+.|+|||++++...
T Consensus 72 ~~~-~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 72 LWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp GCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccc-cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 654 347899999886653321 0 13557788899999999988763
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.47 E-value=6.5e-08 Score=86.18 Aligned_cols=105 Identities=19% Similarity=0.202 Sum_probs=78.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC---CCCCeEEEEccCCCC-CCCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG---LADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~-~~~~~~fD~V~~~ 233 (379)
+.+||-||.|.|..++.+.+.. ..+|+.+|+++.+++.+++.+.... -.++++++.+|+... .-..++||+|++-
T Consensus 107 pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~D 186 (312)
T d2b2ca1 107 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITD 186 (312)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEEC
T ss_pred CCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEEc
Confidence 7899999999999999999865 3689999999999999999764321 136899999998663 2235789999975
Q ss_pred cccCCCC----CHHHHHHHHHHhcCCCCEEEEEe
Q 016981 234 ESGEHMP----DKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 234 ~~l~~~~----~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
..-..-+ -..++++.+.+.|+|||.++...
T Consensus 187 ~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 187 SSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp CC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 3321111 11678999999999999998864
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=4.7e-07 Score=79.44 Aligned_cols=87 Identities=24% Similarity=0.316 Sum_probs=71.3
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
..++.+++.++... +..|||||+|+|.++..|++. +.+|+++++++.+++..++.+.......++.++.+|+.+
T Consensus 8 ~i~~kIv~~~~~~~-----~d~VlEIGPG~G~LT~~Ll~~-~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~ 81 (278)
T d1zq9a1 8 LIINSIIDKAALRP-----TDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLK 81 (278)
T ss_dssp HHHHHHHHHTCCCT-----TCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT
T ss_pred HHHHHHHHHhCCCC-----CCEEEEECCCchHHHHHHHhc-CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhh
Confidence 35677777777655 899999999999999999998 689999999999999999988765555689999999988
Q ss_pred CCCCCCcccEEEecc
Q 016981 220 QPFPDGQFDLVWSME 234 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~ 234 (379)
..++ .++.|+++.
T Consensus 82 ~~~~--~~~~vV~NL 94 (278)
T d1zq9a1 82 TDLP--FFDTCVANL 94 (278)
T ss_dssp SCCC--CCSEEEEEC
T ss_pred hhhh--hhhhhhcch
Confidence 7653 356666653
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=1.4e-07 Score=83.40 Aligned_cols=105 Identities=17% Similarity=0.229 Sum_probs=80.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc---CCCCCeEEEEccCCCC-CCCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR---GLADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~---~~~~~i~~~~~d~~~~-~~~~~~fD~V~~~ 233 (379)
+++||-+|.|.|..+..+.+.. ..+|+.+|+++.+++.|++.+... --.++++++.+|+... .-..++||+|++-
T Consensus 79 pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D 158 (285)
T d2o07a1 79 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITD 158 (285)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEE
T ss_pred cCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEEc
Confidence 7899999999999999999865 569999999999999999987531 1246899999997653 2235789999975
Q ss_pred cccCCCC---C--HHHHHHHHHHhcCCCCEEEEEec
Q 016981 234 ESGEHMP---D--KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 234 ~~l~~~~---~--~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
. ..... . ..++++.+.+.|+|||.+++...
T Consensus 159 ~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 193 (285)
T d2o07a1 159 S-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 193 (285)
T ss_dssp C-C-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred C-CCCCCcccccccHHHHHHHHHhcCCCCeEEEecc
Confidence 3 22111 1 15789999999999999988653
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.43 E-value=1.3e-06 Score=78.23 Aligned_cols=106 Identities=16% Similarity=0.207 Sum_probs=84.1
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEe---
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWS--- 232 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~--- 232 (379)
++.+|||+.+|.|.=+..++... .+.++++|.++.-+...++++++.|. .++.+...|....+..+..||.|++
T Consensus 116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~-~~i~~~~~d~~~~~~~~~~fD~ILvDaP 194 (313)
T d1ixka_ 116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV-LNVILFHSSSLHIGELNVEFDKILLDAP 194 (313)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC-CSEEEESSCGGGGGGGCCCEEEEEEECC
T ss_pred ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh-hccccccccccccccccccccEEEEccc
Confidence 48999999999999988888776 46899999999999999999999987 5788887887776655788999985
Q ss_pred ---ccccCCCCC------H----------HHHHHHHHHhcCCCCEEEEEec
Q 016981 233 ---MESGEHMPD------K----------SKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 233 ---~~~l~~~~~------~----------~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.+++..-++ . .++|.++.+.|||||.++.++-
T Consensus 195 CSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTC 245 (313)
T d1ixka_ 195 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 245 (313)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred cccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeec
Confidence 222222121 1 3578889999999999998874
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.36 E-value=1.6e-06 Score=71.13 Aligned_cols=109 Identities=20% Similarity=0.264 Sum_probs=78.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
.+.++.+...+-. ++.+|||+||+.|.|+..+.+.. ...++++|+.+.. .-+++.+..+|+.
T Consensus 9 KL~EI~~k~~l~k----~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~------------~i~~~~~~~~d~~ 72 (180)
T d1ej0a_ 9 KLDEIQQSDKLFK----PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD------------PIVGVDFLQGDFR 72 (180)
T ss_dssp HHHHHHHHHCCCC----TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC------------CCTTEEEEESCTT
T ss_pred HHHHHHHHhCccC----CCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc------------ccCCceEeecccc
Confidence 3444455444422 48899999999999999998866 4689999987621 1257899999987
Q ss_pred CCC--------CCCCcccEEEeccccCCCCCH-----------HHHHHHHHHhcCCCCEEEEEecc
Q 016981 219 QQP--------FPDGQFDLVWSMESGEHMPDK-----------SKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 219 ~~~--------~~~~~fD~V~~~~~l~~~~~~-----------~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+.. ...+.+|+|++-.......+. ...+.-+.++||+||.+++=.+.
T Consensus 73 ~~~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~ 138 (180)
T d1ej0a_ 73 DELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp SHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred cchhhhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence 632 235689999988766554332 24566678999999999997754
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.25 E-value=8.7e-07 Score=75.67 Aligned_cols=107 Identities=14% Similarity=0.185 Sum_probs=71.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~ 215 (379)
.+.+++..+. +.+|||+|++.|..+..++... .++++|+|+.+........ ..+++.+..+
T Consensus 71 ~~~eli~~~K--------Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~------~~~~I~~i~g 136 (232)
T d2bm8a1 71 VYHDMLWELR--------PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQG 136 (232)
T ss_dssp HHHHHHHHHC--------CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEEC
T ss_pred HHHHHHHHhC--------CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc------cccceeeeec
Confidence 4556666543 7899999999998877666432 4799999997654332211 1268999999
Q ss_pred cCCCCC----CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 216 DALQQP----FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 216 d~~~~~----~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|..+.. +....+|+|+.-.. |+-.....-+ +....|+|||++++.|
T Consensus 137 Ds~~~~~~~~l~~~~~dlIfID~~-H~~~~v~~~~-~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 137 DCSDLTTFEHLREMAHPLIFIDNA-HANTFNIMKW-AVDHLLEEGDYFIIED 186 (232)
T ss_dssp CSSCSGGGGGGSSSCSSEEEEESS-CSSHHHHHHH-HHHHTCCTTCEEEECS
T ss_pred ccccHHHHHHHHhcCCCEEEEcCC-cchHHHHHHH-HHhcccCcCCEEEEEc
Confidence 976542 33456898876543 3322112223 4568999999999976
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.19 E-value=3.9e-06 Score=74.00 Aligned_cols=106 Identities=15% Similarity=0.171 Sum_probs=81.2
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CCCCCcccEEEe---
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWS--- 232 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~V~~--- 232 (379)
++.+|||+.+|.|.=+..+++.. +..|+++|+++.-+...++++++.|.. ++.....|.... ....+.||.|++
T Consensus 102 ~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~-~~~~~~~~~~~~~~~~~~~fd~IL~DaP 180 (284)
T d1sqga2 102 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQWCGEQQFDRILLDAP 180 (284)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTHHHHTTCCEEEEEEECC
T ss_pred ccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc-ceeeeccccccchhcccccccEEEEecc
Confidence 48999999999999999998876 578999999999999999999999873 555544443322 233568999994
Q ss_pred ---ccccCCCCCH----------------HHHHHHHHHhcCCCCEEEEEec
Q 016981 233 ---MESGEHMPDK----------------SKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 233 ---~~~l~~~~~~----------------~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.+++..-++. .++|.++.+.|||||+|+.++-
T Consensus 181 CSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTC 231 (284)
T d1sqga2 181 CSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 231 (284)
T ss_dssp CCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred ccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence 3344333332 4688889999999999999874
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.15 E-value=9.5e-07 Score=76.44 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
..++++++.+.... ++.|||||||+|.++..|++. +.+|+++|+++.+++..+++... .+++.++.+|+.+
T Consensus 8 ~~~~~Iv~~~~~~~-----~d~vlEIGpG~G~LT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~~---~~~~~ii~~D~l~ 78 (252)
T d1qyra_ 8 FVIDSIVSAINPQK-----GQAMVEIGPGLAALTEPVGER-LDQLTVIELDRDLAARLQTHPFL---GPKLTIYQQDAMT 78 (252)
T ss_dssp HHHHHHHHHHCCCT-----TCCEEEECCTTTTTHHHHHTT-CSCEEEECCCHHHHHHHHTCTTT---GGGEEEECSCGGG
T ss_pred HHHHHHHHhcCCCC-----CCEEEEECCCchHHHHHHHcc-CCceEEEEeccchhHHHHHHhhh---ccchhHHhhhhhh
Confidence 35667777776655 889999999999999999987 78999999999999998875432 2589999999987
Q ss_pred CCC
Q 016981 220 QPF 222 (379)
Q Consensus 220 ~~~ 222 (379)
.++
T Consensus 79 ~~~ 81 (252)
T d1qyra_ 79 FNF 81 (252)
T ss_dssp CCH
T ss_pred hcc
Confidence 653
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=2e-05 Score=69.60 Aligned_cols=74 Identities=16% Similarity=0.142 Sum_probs=63.1
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC---CCcccEEEe
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP---DGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~fD~V~~ 232 (379)
++.+|||+.+|.|.-+..++... ...|+++|+++.-++..++++++.|+ .++.+...|...+... .+.||.|++
T Consensus 94 ~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~-~~~~~~~~d~~~~~~~~~~~~~fD~VL~ 172 (293)
T d2b9ea1 94 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSPSDPRYHEVHYILL 172 (293)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred ccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc-cceeeeehhhhhhcccccccceeeEEee
Confidence 48999999999999999888765 56899999999999999999999998 5899999998776322 257999985
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.11 E-value=8.3e-06 Score=74.46 Aligned_cols=101 Identities=13% Similarity=0.026 Sum_probs=79.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCC--------------CeEEEEccCCCCC-C
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLAD--------------KVSFQVGDALQQP-F 222 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~--------------~i~~~~~d~~~~~-~ 222 (379)
+.+|||..||||..++..+... ..+|+..|+|+.+++.++++++.++... ++.+...|+.... .
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~ 125 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 125 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHh
Confidence 7899999999999999777765 4589999999999999999999887532 2455555654332 1
Q ss_pred CCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 223 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
....||+|..- .+..+..+|+.+.+.++.||.|.++.
T Consensus 126 ~~~~fDvIDiD----PfGs~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 126 RHRYFHFIDLD----PFGSPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp STTCEEEEEEC----CSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCcCCcccCC----CCCCcHHHHHHHHHHhccCCEEEEEe
Confidence 24579999754 34566889999999999999999975
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.11 E-value=9.4e-06 Score=75.83 Aligned_cols=118 Identities=18% Similarity=0.293 Sum_probs=85.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-C-------------CEEEEEeCCHHHHHHHHHHHHHcCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-G-------------AKCQGITLSPVQAQRANALAAARGL 206 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~-------------~~v~gvD~s~~~~~~a~~~~~~~~~ 206 (379)
+++.+++.+... ++.+|+|.+||+|.+...+.+.. . ..+.|+|+++.+...|+-+..-.+.
T Consensus 150 Iv~~mv~ll~~~-----~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~ 224 (425)
T d2okca1 150 LIQAMVDCINPQ-----MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI 224 (425)
T ss_dssp HHHHHHHHHCCC-----TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC
T ss_pred hhHhhheeccCc-----ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCC
Confidence 344445555443 37899999999999998887654 1 2589999999999999988777665
Q ss_pred C-CCeEEEEccCCCCCCCCCcccEEEeccccCCCC----------------C-HHHHHHHHHHhcCCCCEEEEEec
Q 016981 207 A-DKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP----------------D-KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 207 ~-~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~----------------~-~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
. .+..+...|....+ +...||+|+++=-+..-. + ...++..+.+.|+|||+++++..
T Consensus 225 ~~~~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 225 GTDRSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp CSSCCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 3 24556777766543 357899999976653221 1 13589999999999999888763
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.82 E-value=0.00024 Score=63.84 Aligned_cols=162 Identities=12% Similarity=0.111 Sum_probs=92.5
Q ss_pred CCEEEEeCCcccHHHHHHHHH--------c---------CCEEEEEeCCHHHHHHHHHHHHHc-CCCCC--eEEEEccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKK--------F---------GAKCQGITLSPVQAQRANALAAAR-GLADK--VSFQVGDAL 218 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~--------~---------~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~--i~~~~~d~~ 218 (379)
..+|.|+||.+|..+..+... + ..+|.--|+-..-....=+.+... ...++ +.-+-+.+.
T Consensus 52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchh
Confidence 478999999999977432221 0 124666665432222111111110 11111 122234444
Q ss_pred CCCCCCCcccEEEeccccCCCCC---------------------------------HHHHHHHHHHhcCCCCEEEEEecc
Q 016981 219 QQPFPDGQFDLVWSMESGEHMPD---------------------------------KSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~---------------------------------~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
.--||+++.|++++...+|++.. ...+|+.=++-|+|||+++++.+.
T Consensus 132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g 211 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG 211 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 44578999999999999998731 234677777889999999998876
Q ss_pred CCCCCCCcc---ccchHHHHHHHHHh----------hccCCC-CCCCHHHHHHHHHhCC-CceeEEEecC
Q 016981 266 HRDLAPSEE---SLQPWEQELLKKIC----------DAYYLP-AWCSTADYVKLLQSLS-LEDIKAEDWS 320 (379)
Q Consensus 266 ~~~~~~~~~---~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~~~~~l~~aG-F~~v~~~~~~ 320 (379)
.++..+... .+.......+.... ..+.+| ++.++++++..+++.| |++...+.+.
T Consensus 212 r~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e~~~ 281 (359)
T d1m6ex_ 212 RRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASE 281 (359)
T ss_dssp CSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEE
T ss_pred cCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeeeEeee
Confidence 554322221 12222222232222 223334 3569999999998877 7776666443
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.73 E-value=7.5e-05 Score=63.05 Aligned_cols=115 Identities=18% Similarity=0.217 Sum_probs=68.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-cCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DAL 218 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~ 218 (379)
.+.++.+..-+. +..+|+|+|||.|.|+..++.+. ...|.|+|+--...+. .......+. +-+.+... |+.
T Consensus 54 Kl~~~~~~~~~~-----~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~~~~-ni~~~~~~~dv~ 126 (257)
T d2p41a1 54 KLRWFVERNLVT-----PEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMSTYGW-NLVRLQSGVDVF 126 (257)
T ss_dssp HHHHHHHTTSSC-----CCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCSTTG-GGEEEECSCCTT
T ss_pred HHHHHHHhcCcc-----CCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-Ccccccccc-ccccchhhhhHH
Confidence 344444443333 37899999999999999999875 3578888873211000 000000011 12333322 222
Q ss_pred CCCCCCCcccEEEeccccCCCCCH-------HHHHHHHHHhcCCCCEEEEEecc
Q 016981 219 QQPFPDGQFDLVWSMESGEHMPDK-------SKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~-------~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
. .+++..|+|+|-..- ..+++ .++|.-+.+.|+|||.+++-.++
T Consensus 127 ~--l~~~~~D~vlcDm~e-ss~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~ 177 (257)
T d2p41a1 127 F--IPPERCDTLLCDIGE-SSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 177 (257)
T ss_dssp T--SCCCCCSEEEECCCC-CCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred h--cCCCcCCEEEeeCCC-CCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence 2 346789999987653 34443 35677778999999998886654
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.66 E-value=8.5e-05 Score=71.04 Aligned_cols=106 Identities=14% Similarity=0.112 Sum_probs=73.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-------------------CCEEEEEeCCHHHHHHHHHHHHHcCCCCC----eEEEEc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-------------------GAKCQGITLSPVQAQRANALAAARGLADK----VSFQVG 215 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-------------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~----i~~~~~ 215 (379)
+.+|+|-+||+|.+...+.+.. ...++|+|+++.+...|+-++--.+...+ -.+...
T Consensus 165 ~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~~ 244 (524)
T d2ar0a1 165 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLG 244 (524)
T ss_dssp TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEES
T ss_pred chhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhhhh
Confidence 7899999999999988766543 12589999999999999887765554322 123333
Q ss_pred cCCCC-CCCCCcccEEEeccccCCC-------------CC-HHHHHHHHHHhcCCCCEEEEEec
Q 016981 216 DALQQ-PFPDGQFDLVWSMESGEHM-------------PD-KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 216 d~~~~-~~~~~~fD~V~~~~~l~~~-------------~~-~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+.... ......||+|+++=-+.-- .+ ...++..+.+.|+|||++.++..
T Consensus 245 ~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP 308 (524)
T d2ar0a1 245 NTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 308 (524)
T ss_dssp CTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEe
Confidence 33221 1234679999987655321 11 13589999999999999888763
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.57 E-value=0.00052 Score=54.91 Aligned_cols=95 Identities=22% Similarity=0.242 Sum_probs=67.0
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----------CCCCc
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDGQ 226 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~ 226 (379)
++.+||-+||| .|.++..+++..|++|+++|.++.-++.|++. +. ...+. .+..... ...+.
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~----ga--~~~~~-~~~~~~~~~~~~~~~~~~~g~g 98 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----GA--DVTLV-VDPAKEEESSIIERIRSAIGDL 98 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TC--SEEEE-CCTTTSCHHHHHHHHHHHSSSC
T ss_pred CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc----CC--cEEEe-ccccccccchhhhhhhcccccC
Confidence 38999999998 57788888887799999999999999988873 21 22222 2211111 11345
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+|+|+-.- .....+..+.++|+|||++++....
T Consensus 99 ~D~vid~~------g~~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 99 PNVTIDCS------GNEKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp CSEEEECS------CCHHHHHHHHHHSCTTCEEEECSCC
T ss_pred CceeeecC------CChHHHHHHHHHHhcCCceEEEecC
Confidence 89887431 1256788999999999999987743
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.37 E-value=7.3e-05 Score=60.15 Aligned_cols=97 Identities=21% Similarity=0.191 Sum_probs=65.4
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-cCCCC-CCCCCcccEEEecc
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DALQQ-PFPDGQFDLVWSME 234 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~-~~~~~~fD~V~~~~ 234 (379)
++.+||-+|+| .|.++..+++..|++|+++|.++..++.+++. |. . .++.. +-.+. ....+.||+|+..-
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l----Ga--~-~~i~~~~~~~~~~~~~~~~d~vi~~~ 99 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM----GA--D-HYIATLEEGDWGEKYFDTFDLIVVCA 99 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TC--S-EEEEGGGTSCHHHHSCSCEEEEEECC
T ss_pred CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc----CC--c-EEeeccchHHHHHhhhcccceEEEEe
Confidence 49999999998 67888888887799999999999988888763 32 1 22221 11111 11235799887643
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
.-.+- ..+....+.|+|||++++....
T Consensus 100 ~~~~~----~~~~~~~~~l~~~G~iv~~G~~ 126 (168)
T d1piwa2 100 SSLTD----IDFNIMPKAMKVGGRIVSISIP 126 (168)
T ss_dssp SCSTT----CCTTTGGGGEEEEEEEEECCCC
T ss_pred cCCcc----chHHHHHHHhhccceEEEeccc
Confidence 32221 1245578899999999997643
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.20 E-value=0.0017 Score=53.10 Aligned_cols=106 Identities=25% Similarity=0.214 Sum_probs=71.6
Q ss_pred HHHcCCCCCCCCCCCEEEEeCCcc-cHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--
Q 016981 146 LRFAGVSEDPTKRPKNVVDVGCGI-GGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-- 221 (379)
Q Consensus 146 l~~~~~~~~~~~~~~~vLDiGcGt-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-- 221 (379)
++..++++ +.+||-+|||. |..+..+++..+ .+|+++|.++.-++.|++. | ..... +..+.+
T Consensus 18 ~~~a~v~~-----G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----G----a~~~~-~~~~~~~~ 83 (195)
T d1kola2 18 AVTAGVGP-----GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----G----FEIAD-LSLDTPLH 83 (195)
T ss_dssp HHHTTCCT-----TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----T----CEEEE-TTSSSCHH
T ss_pred HHHhCCCC-----CCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----c----ccEEE-eCCCcCHH
Confidence 34455655 99999999997 667777787664 5899999999999988773 2 22222 222211
Q ss_pred ------CCCCcccEEEeccccC------CC---CCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 222 ------FPDGQFDLVWSMESGE------HM---PDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 222 ------~~~~~fD~V~~~~~l~------~~---~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
.....+|+++-.-... +. ......++.+.++++|||++.+....
T Consensus 84 ~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~ 142 (195)
T d1kola2 84 EQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLY 142 (195)
T ss_dssp HHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCC
T ss_pred HHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeec
Confidence 1234589988543211 11 12357899999999999999998753
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.06 E-value=0.0013 Score=52.40 Aligned_cols=100 Identities=22% Similarity=0.225 Sum_probs=67.3
Q ss_pred HHcCCCCCCCCCCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CCCC
Q 016981 147 RFAGVSEDPTKRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPD 224 (379)
Q Consensus 147 ~~~~~~~~~~~~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~ 224 (379)
+..++.+ +++||=+|||. |.++..+++..|++++++|.++.-.+.+++. |. -.++...-... ....
T Consensus 24 ~~~~~~~-----G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~l----Ga---d~~i~~~~~~~~~~~~ 91 (168)
T d1uufa2 24 RHWQAGP-----GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL----GA---DEVVNSRNADEMAAHL 91 (168)
T ss_dssp HHTTCCT-----TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TC---SEEEETTCHHHHHTTT
T ss_pred HHhCCCC-----CCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhcc----CC---cEEEECchhhHHHHhc
Confidence 4445554 99999999974 7788889988899999999999887777653 32 12222111111 1223
Q ss_pred CcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 225 GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 225 ~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+.+|+|+-.-.-. ..+....++|+|||++++...
T Consensus 92 ~~~D~vid~~g~~------~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 92 KSFDFILNTVAAP------HNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp TCEEEEEECCSSC------CCHHHHHTTEEEEEEEEECCC
T ss_pred CCCceeeeeeecc------hhHHHHHHHHhcCCEEEEecc
Confidence 5699887543322 236777899999999998764
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.06 E-value=0.0014 Score=52.62 Aligned_cols=93 Identities=23% Similarity=0.247 Sum_probs=65.4
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--------CCCCcc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~f 227 (379)
++.+||=+|||. |..+..+++..|+ +|+++|.++.-++.+++. |. ..++ |..+.. .....+
T Consensus 27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----Ga---~~~i--~~~~~~~~~~v~~~t~g~G~ 97 (174)
T d1jqba2 27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----GA---TDIL--NYKNGHIEDQVMKLTNGKGV 97 (174)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----TC---SEEE--CGGGSCHHHHHHHHTTTSCE
T ss_pred CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----Cc---cccc--cccchhHHHHHHHHhhccCc
Confidence 388999999996 8888899987775 799999999988888763 22 1222 222211 123459
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
|+|+-.-.- ...+++..++|+|+|++++....
T Consensus 98 D~vid~~g~------~~~~~~a~~~~~~~G~iv~~G~~ 129 (174)
T d1jqba2 98 DRVIMAGGG------SETLSQAVKMVKPGGIISNINYH 129 (174)
T ss_dssp EEEEECSSC------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred ceEEEccCC------HHHHHHHHHHHhcCCEEEEEeec
Confidence 998753221 34578888999999999997653
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.05 E-value=0.00034 Score=56.78 Aligned_cols=95 Identities=19% Similarity=0.132 Sum_probs=65.1
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC--------C-CCCCc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--------P-FPDGQ 226 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--------~-~~~~~ 226 (379)
++.+||-+|+|. |..+..+++..|+ +|+++|.++..++.+++. |. . .++...-.+. . .....
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga--~-~vi~~~~~~~~~~~~~i~~~~~~~g 100 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GA--D-LTLNRRETSVEERRKAIMDITHGRG 100 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TC--S-EEEETTTSCHHHHHHHHHHHTTTSC
T ss_pred CCCEEEEECCCccchhheecccccccccccccccccccccccccc----cc--e-EEEeccccchHHHHHHHHHhhCCCC
Confidence 489999999984 7788888988876 899999999999988763 31 1 1221111110 0 12345
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+|+|+-.- .. ...++...+.|+|||++++....
T Consensus 101 ~Dvvid~v--G~----~~~~~~a~~~l~~~G~iv~~G~~ 133 (182)
T d1vj0a2 101 ADFILEAT--GD----SRALLEGSELLRRGGFYSVAGVA 133 (182)
T ss_dssp EEEEEECS--SC----TTHHHHHHHHEEEEEEEEECCCC
T ss_pred ceEEeecC--Cc----hhHHHHHHHHhcCCCEEEEEeec
Confidence 89987432 11 34578889999999999887643
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.02 E-value=0.00096 Score=56.60 Aligned_cols=80 Identities=19% Similarity=0.165 Sum_probs=59.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC--------CCCeEEEEccCCCC-CCCCCcccE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL--------ADKVSFQVGDALQQ-PFPDGQFDL 229 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--------~~~i~~~~~d~~~~-~~~~~~fD~ 229 (379)
..+|||.-||.|..+..++.. |++|+++|-++.+....+..+++... ..+++++.+|..+. .-..++||+
T Consensus 89 ~~~VlD~TaGlG~Da~vlA~~-G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~Dv 167 (250)
T d2oyra1 89 LPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (250)
T ss_dssp CCCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred CCEEEECCCcccHHHHHHHhC-CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCE
Confidence 358999999999999999987 78999999999877666654433211 13789999997553 323567999
Q ss_pred EEeccccCCC
Q 016981 230 VWSMESGEHM 239 (379)
Q Consensus 230 V~~~~~l~~~ 239 (379)
|+.-=++.+-
T Consensus 168 IYlDPMFp~~ 177 (250)
T d2oyra1 168 VYLDPMFPHK 177 (250)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCccc
Confidence 9986666543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.0037 Score=49.71 Aligned_cols=95 Identities=17% Similarity=0.141 Sum_probs=64.8
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--------CCCCcc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~f 227 (379)
++.+||=+|||. |..+..+++..|+ +|+++|.++.-++.|++. |. . .+...+-.+.. .....+
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----Ga--~-~~~~~~~~~~~~~~~~~~~~~g~g~ 98 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GA--D-LVLQISKESPQEIARKVEGQLGCKP 98 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC--S-EEEECSSCCHHHHHHHHHHHHTSCC
T ss_pred CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----CC--c-ccccccccccccccccccccCCCCc
Confidence 389999999986 5567777777676 899999999999988763 22 1 12222211110 012468
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
|+|+-.- .. ...++...+.+++||++++....
T Consensus 99 Dvvid~~-----G~-~~~~~~a~~~~~~gG~iv~~G~~ 130 (171)
T d1pl8a2 99 EVTIECT-----GA-EASIQAGIYATRSGGTLVLVGLG 130 (171)
T ss_dssp SEEEECS-----CC-HHHHHHHHHHSCTTCEEEECSCC
T ss_pred eEEEecc-----CC-chhHHHHHHHhcCCCEEEEEecC
Confidence 9887532 11 56789999999999999998754
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.94 E-value=0.0012 Score=58.50 Aligned_cols=75 Identities=12% Similarity=0.101 Sum_probs=57.6
Q ss_pred HHHHHHHHcCCCCC-CCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 141 MIEETLRFAGVSED-PTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 141 ~~~~~l~~~~~~~~-~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
.++.+++.+++... ....+..|||||+|.|.++..|.+.. ..+|+++|+++...+..++.+. ..++.++.+|+.
T Consensus 25 i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii~~D~l 100 (322)
T d1i4wa_ 25 VYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE----GSPLQILKRDPY 100 (322)
T ss_dssp HHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT----TSSCEEECSCTT
T ss_pred HHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc----CCCcEEEeCchh
Confidence 56666666655421 11247789999999999999999875 3589999999999999887753 257899999986
Q ss_pred C
Q 016981 219 Q 219 (379)
Q Consensus 219 ~ 219 (379)
.
T Consensus 101 ~ 101 (322)
T d1i4wa_ 101 D 101 (322)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.88 E-value=0.0006 Score=54.82 Aligned_cols=90 Identities=17% Similarity=0.221 Sum_probs=65.2
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--------CCCCcc
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~f 227 (379)
++.+||-.|+ |.|..+..+++..|++|++++.+++..+.+++ .|.. .++ |..+.. .....+
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~----~Ga~---~vi--~~~~~~~~~~i~~~t~~~g~ 98 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGAH---EVF--NHREVNYIDKIKKYVGEKGI 98 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---EEE--ETTSTTHHHHHHHHHCTTCE
T ss_pred CCCEEEEEeccccccccccccccccCcccccccccccccccccc----cCcc---ccc--ccccccHHHHhhhhhccCCc
Confidence 4899999996 56788889998889999999999887777765 3331 222 322221 234569
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|+|+..- -...+....++|+|||+++...
T Consensus 99 d~v~d~~-------g~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 99 DIIIEML-------ANVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp EEEEESC-------HHHHHHHHHHHEEEEEEEEECC
T ss_pred eEEeecc-------cHHHHHHHHhccCCCCEEEEEe
Confidence 9998642 1456888999999999998865
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.82 E-value=0.0028 Score=50.18 Aligned_cols=93 Identities=15% Similarity=0.112 Sum_probs=62.1
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CCCCcccEEE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FPDGQFDLVW 231 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~fD~V~ 231 (379)
++.+||=+|+|. |..+..+++..|.+|+++|.++..++.+++ .|. ..++...-.+.. ...+.+|.|+
T Consensus 27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~----~Ga---~~~i~~~~~~~~~~~~~~~~g~~~~i~ 99 (166)
T d1llua2 27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARK----LGA---SLTVNARQEDPVEAIQRDIGGAHGVLV 99 (166)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTC---SEEEETTTSCHHHHHHHHHSSEEEEEE
T ss_pred CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhc----cCc---cccccccchhHHHHHHHhhcCCccccc
Confidence 389999999884 677888888779999999999999888876 232 222222211110 1123344444
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+.. . ...+....+.|+|||++++...
T Consensus 100 ~~~------~-~~~~~~~~~~l~~~G~iv~~G~ 125 (166)
T d1llua2 100 TAV------S-NSAFGQAIGMARRGGTIALVGL 125 (166)
T ss_dssp CCS------C-HHHHHHHHTTEEEEEEEEECCC
T ss_pred ccc------c-chHHHHHHHHhcCCcEEEEEEe
Confidence 321 1 4568889999999999998764
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.64 E-value=0.0053 Score=48.44 Aligned_cols=92 Identities=15% Similarity=0.121 Sum_probs=61.4
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC------CCCCcccEE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~fD~V 230 (379)
++.+||=.|+|. |..+..+++..+++|+++|.++.-++.+++ .|. ........+.. ...+.+|+|
T Consensus 27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~----~Ga----~~~~~~~~~~~~~~~~~~~~~~~~~v 98 (168)
T d1rjwa2 27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGA----DLVVNPLKEDAAKFMKEKVGGVHAAV 98 (168)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTC----SEEECTTTSCHHHHHHHHHSSEEEEE
T ss_pred CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh----cCc----ceecccccchhhhhcccccCCCceEE
Confidence 389999999986 556777777778899999999998888766 232 12221111110 122344444
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
++.. . ...+....+.|+|||++++...
T Consensus 99 ~~~~------~-~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 99 VTAV------S-KPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp ESSC------C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred eecC------C-HHHHHHHHHHhccCCceEeccc
Confidence 3321 1 5678999999999999999764
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.58 E-value=0.013 Score=46.51 Aligned_cols=94 Identities=17% Similarity=0.116 Sum_probs=63.2
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CCCCcccEE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~fD~V 230 (379)
++.+||=+|+|. |..+..+++..+ ..|+++|.++.-++.+++. +. ..++..+-+... .....+|+|
T Consensus 32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga---~~~i~~~~~~~~~~~~~~~~~g~d~v 104 (172)
T d1h2ba2 32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GA---DHVVDARRDPVKQVMELTRGRGVNVA 104 (172)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TC---SEEEETTSCHHHHHHHHTTTCCEEEE
T ss_pred CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----cc---ceeecCcccHHHHHHHhhCCCCceEE
Confidence 489999999985 556677777664 5889999999888887763 21 223322211110 123458888
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+-.-. -...++...+.|++||++++...
T Consensus 105 id~~g------~~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 105 MDFVG------SQATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp EESSC------CHHHHHHGGGGEEEEEEEEECCC
T ss_pred EEecC------cchHHHHHHHHHhCCCEEEEEeC
Confidence 74321 14578899999999999998774
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.57 E-value=0.00099 Score=52.71 Aligned_cols=99 Identities=16% Similarity=0.174 Sum_probs=71.7
Q ss_pred CCCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 157 KRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 157 ~~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
-++.+|+=||+|. |..+...+..+|+.|+.+|.++..++..+.... .++.+...+-..+.-.-...|+|+..-.
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~-----~~~~~~~~~~~~l~~~~~~aDivI~aal 104 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG-----SRVELLYSNSAEIETAVAEADLLIGAVL 104 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGSEEEECCHHHHHHHHHTCSEEEECCC
T ss_pred CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhc-----ccceeehhhhhhHHHhhccCcEEEEeee
Confidence 4588999999995 777888888889999999999999988877653 3466655543333211235899997655
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEE
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTII 260 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~ 260 (379)
+.--+.|.-+-+++.+.+|||..++
T Consensus 105 ipG~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 105 VPGRRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp CTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred cCCcccCeeecHHHHhhcCCCcEEE
Confidence 5443444555677889999999754
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.52 E-value=0.0082 Score=47.80 Aligned_cols=94 Identities=18% Similarity=0.208 Sum_probs=64.2
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-----CCCCCcccEE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~fD~V 230 (379)
++.+||=+|||. |..+..+++..+. .|+++|.++.-++.+++. |. ..++..+-.+. .+.++.||+|
T Consensus 28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga---~~~i~~~~~~~~~~i~~~t~gg~D~v 100 (174)
T d1f8fa2 28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GA---THVINSKTQDPVAAIKEITDGGVNFA 100 (174)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TC---SEEEETTTSCHHHHHHHHTTSCEEEE
T ss_pred CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CC---eEEEeCCCcCHHHHHHHHcCCCCcEE
Confidence 489999999985 4567777776654 678889999988888763 32 22332222221 1224579998
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+-.- -....++.+.++++|+|++++...
T Consensus 101 id~~------G~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 101 LEST------GSPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp EECS------CCHHHHHHHHHTEEEEEEEEECCC
T ss_pred EEcC------CcHHHHHHHHhcccCceEEEEEee
Confidence 7431 125678899999999999998764
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.50 E-value=0.019 Score=45.26 Aligned_cols=95 Identities=19% Similarity=0.240 Sum_probs=64.2
Q ss_pred CCCEEEEeCC-c-ccHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC------CCCCccc
Q 016981 158 RPKNVVDVGC-G-IGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFD 228 (379)
Q Consensus 158 ~~~~vLDiGc-G-tG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~fD 228 (379)
++.+||=+|| | .|..+..+++..+ ..|+++|.++.-++.+++. |. . .++..+-.+.. ...+.||
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga--~-~~i~~~~~~~~~~~~~~~~~~~~d 99 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GA--D-YVINASMQDPLAEIRRITESKGVD 99 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TC--S-EEEETTTSCHHHHHHHHTTTSCEE
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CC--c-eeeccCCcCHHHHHHHHhhcccch
Confidence 3899999997 3 5666777777665 6999999999988888763 32 1 22222222110 1235699
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+|+-.. --...++.+.+.++|||++++....
T Consensus 100 ~vid~~------g~~~~~~~a~~~l~~~G~iv~~G~~ 130 (170)
T d1jvba2 100 AVIDLN------NSEKTLSVYPKALAKQGKYVMVGLF 130 (170)
T ss_dssp EEEESC------CCHHHHTTGGGGEEEEEEEEECCSS
T ss_pred hhhccc------ccchHHHhhhhhcccCCEEEEeccc
Confidence 888542 1256678889999999999988654
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.48 E-value=0.0089 Score=47.67 Aligned_cols=94 Identities=20% Similarity=0.220 Sum_probs=65.9
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-------CCCCccc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQFD 228 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~fD 228 (379)
++.+||=+|||. |..+..+++..|+ .|+.+|.++.-++.|++. |. ..++...-.+.. ...+.+|
T Consensus 28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~----Ga---~~~i~~~~~~~~~~~~~~~~~~~G~d 100 (174)
T d1e3ia2 28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GA---TDCLNPRELDKPVQDVITELTAGGVD 100 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TC---SEEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh----CC---CcccCCccchhhhhhhHhhhhcCCCc
Confidence 489999999997 8889999998865 799999999988887763 32 122221111111 1235689
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCC-CEEEEEec
Q 016981 229 LVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (379)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~i~~~ 264 (379)
+|+-.- -....+.+..+.|+|| |++++...
T Consensus 101 ~vie~~------G~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 101 YSLDCA------GTAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp EEEESS------CCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred EEEEec------ccchHHHHHHHHhhcCCeEEEecCC
Confidence 887431 1266799999999997 99988764
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=96.35 E-value=0.018 Score=50.01 Aligned_cols=104 Identities=15% Similarity=0.100 Sum_probs=73.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC--CCeEEEEccCCCCC--------CCCCccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA--DKVSFQVGDALQQP--------FPDGQFD 228 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~~~--------~~~~~fD 228 (379)
...|+.+|||-=.-...+....+.+++=+|. |.+++.-++.+.+.+.. .+..++..|+.+.. +..+..-
T Consensus 90 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~pt 168 (297)
T d2uyoa1 90 IRQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSART 168 (297)
T ss_dssp CCEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCE
T ss_pred CCeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCE
Confidence 4567779999876655542211568888886 78888877888776543 34567777776521 2234455
Q ss_pred EEEeccccCCCCC--HHHHHHHHHHhcCCCCEEEEEe
Q 016981 229 LVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 229 ~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
++++-+++.+++. ..++++.+.+...||+.+++-.
T Consensus 169 l~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~ 205 (297)
T d2uyoa1 169 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVET 205 (297)
T ss_dssp EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred EEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 6777788888864 4789999999999999988754
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.31 E-value=0.0046 Score=49.55 Aligned_cols=98 Identities=12% Similarity=0.126 Sum_probs=64.8
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CCCCCcccEEEecc
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSME 234 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~V~~~~ 234 (379)
++.+||=.|. |.|..+..+++..|++|+++.-|+.-.+.+++. |...-+.....+.+.. ....+.+|+|+-.-
T Consensus 31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~l----Ga~~vi~~~~~~~~~~~~~~~~gvD~vid~v 106 (176)
T d1xa0a2 31 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVL----GAKEVLAREDVMAERIRPLDKQRWAAAVDPV 106 (176)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHT----TCSEEEECC---------CCSCCEEEEEECS
T ss_pred CCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhc----ccceeeecchhHHHHHHHhhccCcCEEEEcC
Confidence 3788999874 567789999998899999999998888887763 3211111111111111 22356799887542
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCEEEEEeccC
Q 016981 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 266 (379)
. ...+.+..++|+|||+++......
T Consensus 107 g-------g~~~~~~l~~l~~~Griv~~G~~~ 131 (176)
T d1xa0a2 107 G-------GRTLATVLSRMRYGGAVAVSGLTG 131 (176)
T ss_dssp T-------TTTHHHHHHTEEEEEEEEECSCCS
T ss_pred C-------chhHHHHHHHhCCCceEEEeeccc
Confidence 2 224888899999999999887543
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=95.94 E-value=0.054 Score=43.05 Aligned_cols=92 Identities=15% Similarity=0.165 Sum_probs=63.9
Q ss_pred CCCEEEEeCCc--ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC------CCCCCcccE
Q 016981 158 RPKNVVDVGCG--IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGcG--tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~~fD~ 229 (379)
++++||=.|++ .|..+..+++..|++|++++-+++..+.+++. |. -..+..+-++. ....+.+|+
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~----Ga---~~vi~~~~~~~~~~~~~~~~~~Gvd~ 101 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GF---DAAFNYKTVNSLEEALKKASPDGYDC 101 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TC---SEEEETTSCSCHHHHHHHHCTTCEEE
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh----hh---hhhcccccccHHHHHHHHhhcCCCce
Confidence 48999988775 46678889988899999999999887776663 32 11222111111 012356999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|+-. +. ...+++..++|+|||.+++..
T Consensus 102 v~D~-----vG--~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 102 YFDN-----VG--GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp EEES-----SC--HHHHHHHGGGEEEEEEEEECC
T ss_pred eEEe-----cC--chhhhhhhhhccCCCeEEeec
Confidence 8743 22 457899999999999999875
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.68 E-value=0.0051 Score=48.95 Aligned_cols=89 Identities=19% Similarity=0.222 Sum_probs=60.3
Q ss_pred CCCEEEEeCC-c-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC---CCCCcccEEEe
Q 016981 158 RPKNVVDVGC-G-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGc-G-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V~~ 232 (379)
++++||=.|. | .|..+..+++..|++|++++.++...+.+++ .|.. . .+ |..+.. .....+|+|+-
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~----lGa~--~-~i--~~~~~~~~~~~~~g~D~v~d 97 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGAE--E-AA--TYAEVPERAKAWGGLDLVLE 97 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTCS--E-EE--EGGGHHHHHHHTTSEEEEEE
T ss_pred CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc----cccc--e-ee--ehhhhhhhhhcccccccccc
Confidence 4899999884 3 4778888998889999999999887777665 3431 1 11 222211 12356999875
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
. .. + .+....+.|+|||++++..
T Consensus 98 ~--~G--~----~~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 98 V--RG--K----EVEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp C--SC--T----THHHHHTTEEEEEEEEEC-
T ss_pred c--cc--h----hHHHHHHHHhcCCcEEEEe
Confidence 3 22 1 2567789999999998865
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=95.54 E-value=0.019 Score=48.22 Aligned_cols=56 Identities=21% Similarity=0.253 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAA 202 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~ 202 (379)
.+++.+++... .++..|||.=||+|..+.+..+. +-+.+|+|+++..++.|++|+.
T Consensus 200 ~L~~~lI~~~s------~~gd~VlDpF~GSGTT~~aa~~~-~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 200 DLIERIIRASS------NPNDLVLDCFMGSGTTAIVAKKL-GRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHHC------CTTCEEEESSCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhC------CCCCEEEECCCCchHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHc
Confidence 46666776653 24899999999999998877765 8899999999999999999874
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.54 E-value=0.056 Score=42.68 Aligned_cols=92 Identities=14% Similarity=0.066 Sum_probs=64.5
Q ss_pred CCCEEEEeCCc--ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--------CCCCcc
Q 016981 158 RPKNVVDVGCG--IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (379)
Q Consensus 158 ~~~~vLDiGcG--tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~f 227 (379)
++.+||=.|+| .|..+..+++..|++|++++.|+.-.+.+++. |.. .++ |..+.. .....+
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~l----Ga~---~vi--~~~~~d~~~~v~~~t~g~g~ 98 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----GAW---QVI--NYREEDLVERLKEITGGKKV 98 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCS---EEE--ETTTSCHHHHHHHHTTTCCE
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhc----CCe---EEE--ECCCCCHHHHHHHHhCCCCe
Confidence 48999998655 57788899988899999999999998888763 321 122 322221 124568
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
|+|+..-. ...+......|+|+|++++....
T Consensus 99 d~v~d~~g-------~~~~~~~~~~l~~~G~~v~~g~~ 129 (179)
T d1qora2 99 RVVYDSVG-------RDTWERSLDCLQRRGLMVSFGNS 129 (179)
T ss_dssp EEEEECSC-------GGGHHHHHHTEEEEEEEEECCCT
T ss_pred EEEEeCcc-------HHHHHHHHHHHhcCCeeeecccc
Confidence 98875432 23477889999999998776543
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.51 E-value=0.028 Score=44.75 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=63.2
Q ss_pred CCCEEEEeC--CcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--------CCCCcc
Q 016981 158 RPKNVVDVG--CGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (379)
Q Consensus 158 ~~~~vLDiG--cGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~f 227 (379)
++++||=.| .|.|..+..+++..|+++++++-+++..+.+++ .|. + ..+ |..+.. .....|
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~----~Ga-~--~vi--~~~~~~~~~~v~~~t~~~g~ 95 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGV-E--YVG--DSRSVDFADEILELTDGYGV 95 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCC-S--EEE--ETTCSTHHHHHHHHTTTCCE
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc----ccc-c--ccc--cCCccCHHHHHHHHhCCCCE
Confidence 488999977 346788889998889999999988887777664 332 1 122 222211 234579
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|+|+..-. ...++.+.++|+|+|+++...
T Consensus 96 d~v~d~~g-------~~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 96 DVVLNSLA-------GEAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp EEEEECCC-------THHHHHHHHTEEEEEEEEECS
T ss_pred EEEEeccc-------chHHHHHHHHhcCCCEEEEEc
Confidence 99986432 246788899999999998864
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.20 E-value=0.23 Score=43.32 Aligned_cols=171 Identities=15% Similarity=0.081 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc-------C-
Q 016981 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR-------G- 205 (379)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~-------~- 205 (379)
..+....+.+.+.. . +...|+-+|||.-.....+.... +..++=+|.. ..++.=++.+.+. +
T Consensus 81 t~~id~~v~~Fl~~---~-----~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p-~vi~~K~~~i~~~~~l~~~l~~ 151 (328)
T d1rjda_ 81 TVGIDAAILEFLVA---N-----EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYN-ESVELKNSILRESEILRISLGL 151 (328)
T ss_dssp HHHHHHHHHHHHHH---C-----SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECH-HHHHHHHHHHHHSHHHHHHHTC
T ss_pred HHHHHHHHHHHHHH---C-----CCcEEEEeCCccchHHHHhhccCCCcEEEECCcH-HHHHHHHHHHHhchhhhhhccc
Confidence 34445555555543 1 25689999999988777776654 4456666763 3433322322221 0
Q ss_pred ------------CCCCeEEEEccCCCCC---------CCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEE
Q 016981 206 ------------LADKVSFQVGDALQQP---------FPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 206 ------------~~~~i~~~~~d~~~~~---------~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~ 262 (379)
..++..++.+|+.+.. +.....-++++=.++.+++.. .++++.+.+..+ +|.+++.
T Consensus 152 ~~~~~~~~~~~~~s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~Y 230 (328)
T d1rjda_ 152 SKEDTAKSPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISY 230 (328)
T ss_dssp CSSCCCCTTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEE
T ss_pred cccccccccccCCCCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEe
Confidence 1246778888887642 223345578888899999643 678888888774 5666777
Q ss_pred eccCCCCCCCccccchHHHHHHHHH--hhccCCCCCCCHHHHHHHHHhCCCceeEEEec
Q 016981 263 TWCHRDLAPSEESLQPWEQELLKKI--CDAYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319 (379)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 319 (379)
+...+.. ..+.+...+...+.+. .....+..+.+.+...+-+ .|+..+...++
T Consensus 231 E~i~~~~--p~D~FG~~M~~nl~~~r~~~l~~~~~~~t~~~~~~r~--~~~~~~~~~dm 285 (328)
T d1rjda_ 231 DPIGGSQ--PNDRFGAIMQSNLKESRNLEMPTLMTYNSKEKYASRW--SAAPNVIVNDM 285 (328)
T ss_dssp EECCCCS--TTCCHHHHHHHHHHHHHCCCCTTTTTTCSHHHHHGGG--TTSSEEEEEEH
T ss_pred ccCCCCC--CCChHHHHHHHHHHHhcCCCCCccccCCCHHHHHHHH--hcCCccchhhH
Confidence 7543221 1233443333333221 1111223455777776655 48877766544
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.19 E-value=0.015 Score=46.32 Aligned_cols=99 Identities=18% Similarity=0.219 Sum_probs=63.8
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc---cCC-------CCC--C--
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG---DAL-------QQP--F-- 222 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~---d~~-------~~~--~-- 222 (379)
++.+||=||+|+ |..+...+..+|+.|+.+|.++..++..++.... .+.+... +.+ .+. +
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~-----~i~~~~~~~~~~~~~~gyA~~~s~~~~~ 102 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGK-----FITVDDEAMKTAETAGGYAKEMGEEFRK 102 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCE-----ECCC-----------------------C
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcc-----eEEEeccccccccccccchhhcCHHHHH
Confidence 478999999996 6678888888899999999999888877764311 1111000 000 000 0
Q ss_pred --------CCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEE
Q 016981 223 --------PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261 (379)
Q Consensus 223 --------~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i 261 (379)
.-...|+|+..-.+.--+.|.-+=+++.+.+|||..++=
T Consensus 103 ~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVD 149 (183)
T d1l7da1 103 KQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIID 149 (183)
T ss_dssp CHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEE
T ss_pred HHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEE
Confidence 012479998766554444444456778899999997653
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=95.17 E-value=0.017 Score=50.22 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA 203 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~ 203 (379)
.++++++.... +++..|||.=||+|..+.+..+. |-+.+|+|+++..++.|++|+..
T Consensus 238 ~L~~rlI~~~s------~~gdiVlDpF~GSGTT~~AA~~l-gR~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 238 KLPEFFIRMLT------EPDDLVVDIFGGSNTTGLVAERE-SRKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp HHHHHHHHHHC------CTTCEEEETTCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHGGGSC
T ss_pred HHHHHhhhhcc------cCCCEEEecCCCCcHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHHHh
Confidence 36666666543 24899999999999998887775 88999999999999999988743
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.08 E-value=0.031 Score=47.51 Aligned_cols=58 Identities=19% Similarity=0.184 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 204 (379)
.+++.++.... .++..|||.=||+|..+.+..+. |-+.+|+|+++...+.|++|+...
T Consensus 195 ~L~~~~I~~~s------~~gdiVLDpF~GSGTT~~Aa~~l-gR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 195 AVIERLVRALS------HPGSTVLDFFAGSGVTARVAIQE-GRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp HHHHHHHHHHS------CTTCEEEETTCTTCHHHHHHHHH-TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred hHHHHHHHhhc------CCCCEEEecCCCCcHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 36666666543 24899999999999998887776 889999999999999999999764
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.01 E-value=0.13 Score=43.31 Aligned_cols=80 Identities=15% Similarity=0.104 Sum_probs=59.9
Q ss_pred CCCEEEEeCCcccH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----------CCC
Q 016981 158 RPKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPD 224 (379)
Q Consensus 158 ~~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~ 224 (379)
+++.+|=.|++.|. .+..|++. |++|+.+|.++..++.+.+.++..+.+.++.++.+|+.+.. -.-
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~-G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~ 87 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQ-GLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH 87 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 37889999988775 33344443 89999999999999998888888776567888999997632 012
Q ss_pred CcccEEEeccccCC
Q 016981 225 GQFDLVWSMESGEH 238 (379)
Q Consensus 225 ~~fD~V~~~~~l~~ 238 (379)
+..|+++.+-...+
T Consensus 88 g~iD~lVnnAg~~~ 101 (257)
T d1xg5a_ 88 SGVDICINNAGLAR 101 (257)
T ss_dssp CCCSEEEECCCCCC
T ss_pred CCCCEEEecccccC
Confidence 67999987765544
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.00 E-value=0.13 Score=40.41 Aligned_cols=96 Identities=16% Similarity=0.133 Sum_probs=60.5
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-------CCCCccc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQFD 228 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~fD 228 (379)
++.+||=+|||. |..+..+++..+ .+|+++|.++.-++.|++. |. ..++...-.+.. ...+.+|
T Consensus 27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l----Ga---~~~i~~~~~d~~~~~~~~~~~~~G~d 99 (174)
T d1p0fa2 27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----GA---TECLNPKDYDKPIYEVICEKTNGGVD 99 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----TC---SEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc----CC---cEEEcCCCchhHHHHHHHHhcCCCCc
Confidence 499999999985 455667777665 5899999999999988762 32 222211111111 1234688
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCC-CCEEEEEeccC
Q 016981 229 LVWSMESGEHMPDKSKFVSELARVTAP-AGTIIIVTWCH 266 (379)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~Lkp-gG~l~i~~~~~ 266 (379)
+|+-.- .. ...+.+....+++ +|.+++.....
T Consensus 100 ~vid~~-----g~-~~~~~~~~~~~~~~~G~~v~vG~~~ 132 (174)
T d1p0fa2 100 YAVECA-----GR-IETMMNALQSTYCGSGVTVVLGLAS 132 (174)
T ss_dssp EEEECS-----CC-HHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred EEEEcC-----CC-chHHHHHHHHHHHhcCceEEEEEec
Confidence 887431 22 4556666666655 69988877543
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.52 E-value=0.18 Score=39.60 Aligned_cols=95 Identities=20% Similarity=0.192 Sum_probs=59.8
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-ccCCCCC------CCCCccc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQQP------FPDGQFD 228 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~------~~~~~fD 228 (379)
++.+||=+|||. |..+..+++..| .+|+++|.+++-++.|++.-. ..++. .+..... .....+|
T Consensus 29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA-------~~~in~~~~~~~~~~~~~~~~g~G~d 101 (176)
T d1d1ta2 29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA-------TECISPKDSTKPISEVLSEMTGNNVG 101 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC-------SEEECGGGCSSCHHHHHHHHHTSCCC
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC-------cEEECccccchHHHHHHHHhccccce
Confidence 489999999985 556777777775 689999999999999988531 11221 1111100 1235688
Q ss_pred EEEeccccCCCCCHHHHHHH-HHHhcCCCCEEEEEecc
Q 016981 229 LVWSMESGEHMPDKSKFVSE-LARVTAPAGTIIIVTWC 265 (379)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~-~~r~LkpgG~l~i~~~~ 265 (379)
+|+-. ... ...+.+ +..+++++|++++....
T Consensus 102 ~vi~~-----~g~-~~~~~~a~~~~~~~~G~~v~vG~~ 133 (176)
T d1d1ta2 102 YTFEV-----IGH-LETMIDALASCHMNYGTSVVVGVP 133 (176)
T ss_dssp EEEEC-----SCC-HHHHHHHHTTSCTTTCEEEECSCC
T ss_pred EEEEe-----CCc-hHHHHHHHHHhhcCCeEEEEEEcc
Confidence 87643 122 334444 44455666999887654
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=94.34 E-value=0.14 Score=45.49 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=35.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--------CCEEEEEeCCHHHHHHHHHHHH
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--------GAKCQGITLSPVQAQRANALAA 202 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--------~~~v~gvD~s~~~~~~a~~~~~ 202 (379)
..+|+|+|+|+|.++..+.+.. ..+++-++.|+.+.+..++++.
T Consensus 80 ~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~ 131 (365)
T d1zkda1 80 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA 131 (365)
T ss_dssp SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred cceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence 5789999999999998876643 2368999999988777766654
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=94.24 E-value=0.07 Score=44.71 Aligned_cols=119 Identities=17% Similarity=0.115 Sum_probs=78.8
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc---------------------------------------
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--------------------------------------- 180 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--------------------------------------- 180 (379)
.++...+...+... +..++|-=||+|.+.+..+-..
T Consensus 37 ~il~~al~l~~w~~-----~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~ 111 (249)
T d1o9ga_ 37 EIFQRALARLPGDG-----PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELER 111 (249)
T ss_dssp HHHHHHHHTSSCCS-----CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHhhhhcCCC-----CCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccc
Confidence 34444444444333 6789999999999988765421
Q ss_pred --CCEEEEEeCCHHHHHHH---HHHHHHcCCCCCeEEEEccCCCCC-----CCCCcccEEEeccccC-CCC----C----
Q 016981 181 --GAKCQGITLSPVQAQRA---NALAAARGLADKVSFQVGDALQQP-----FPDGQFDLVWSMESGE-HMP----D---- 241 (379)
Q Consensus 181 --~~~v~gvD~s~~~~~~a---~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~fD~V~~~~~l~-~~~----~---- 241 (379)
...++|.|+++.+++.| ++++...|+...+.+...|+.+.. .+....++|+++=-.. -+. .
T Consensus 112 ~~~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~ 191 (249)
T d1o9ga_ 112 REQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQP 191 (249)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHH
T ss_pred cccCCccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHH
Confidence 02457999999999988 468888899888999999987642 1235578999874332 221 1
Q ss_pred HHHHHHHHHHhcCCCCEEEEEe
Q 016981 242 KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 242 ~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
...+...+.++|..-..++++.
T Consensus 192 ~~~~~~~l~~~~p~~s~~~it~ 213 (249)
T d1o9ga_ 192 VAGLLRSLASALPAHAVIAVTD 213 (249)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEE
T ss_pred HHHHHHHHHccCCCCcEEEEeC
Confidence 2455556777786555566654
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=94.12 E-value=0.021 Score=45.03 Aligned_cols=95 Identities=18% Similarity=0.172 Sum_probs=64.4
Q ss_pred CCEEEEeC--CcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC-CC-C-CCCCCcccEEEec
Q 016981 159 PKNVVDVG--CGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQ-Q-PFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiG--cGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~-~-~~~~~~fD~V~~~ 233 (379)
+.+||=-| .|.|..+..+++..|++|+++.-|++..+.+++. |.. .+ +...|. .+ . ....+.+|+|+-.
T Consensus 24 ~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~l----Gad-~v-i~~~~~~~~~~~~~~~~gvd~vid~ 97 (167)
T d1tt7a2 24 KGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL----GAS-EV-ISREDVYDGTLKALSKQQWQGAVDP 97 (167)
T ss_dssp GCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHH----TCS-EE-EEHHHHCSSCCCSSCCCCEEEEEES
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhh----ccc-ce-EeccchhchhhhcccCCCceEEEec
Confidence 55688766 4567889999998899999999998877777653 331 12 111111 11 1 2334679988643
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCCEEEEEeccC
Q 016981 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 266 (379)
+. ...+.+..+.|+|+|++++.....
T Consensus 98 -----vg--g~~~~~~~~~l~~~G~iv~~G~~~ 123 (167)
T d1tt7a2 98 -----VG--GKQLASLLSKIQYGGSVAVSGLTG 123 (167)
T ss_dssp -----CC--THHHHHHHTTEEEEEEEEECCCSS
T ss_pred -----Cc--HHHHHHHHHHhccCceEEEeeccC
Confidence 21 357889999999999999877544
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=93.91 E-value=0.096 Score=40.70 Aligned_cols=87 Identities=14% Similarity=0.117 Sum_probs=54.7
Q ss_pred CEEEEeCCcc--cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 160 KNVVDVGCGI--GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 160 ~~vLDiGcGt--G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
++|.=||+|. +.++..+.+. |.+|+++|.++..++.+++. +. +.....+.+. -...|+|+..--
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~-g~~V~~~d~~~~~~~~a~~~----~~---~~~~~~~~~~----~~~~DiIilavp-- 66 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR-GHYLIGVSRQQSTCEKAVER----QL---VDEAGQDLSL----LQTAKIIFLCTP-- 66 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT----TS---CSEEESCGGG----GTTCSEEEECSC--
T ss_pred CEEEEEeecHHHHHHHHHHHHC-CCEEEEEECCchHHHHHHHh----hc---cceeeeeccc----ccccccccccCc--
Confidence 3677788873 3455555554 78999999999888876652 22 2122222222 245798885322
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEE
Q 016981 238 HMPDKSKFVSELARVTAPAGTIII 261 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i 261 (379)
.....++++++...|+++-.++-
T Consensus 67 -~~~~~~vl~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 67 -IQLILPTLEKLIPHLSPTAIVTD 89 (165)
T ss_dssp -HHHHHHHHHHHGGGSCTTCEEEE
T ss_pred -Hhhhhhhhhhhhhhcccccceee
Confidence 12336888999988888886643
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.66 E-value=0.3 Score=38.02 Aligned_cols=93 Identities=16% Similarity=0.217 Sum_probs=61.4
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-------CCCCccc
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQFD 228 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~fD 228 (379)
++.+||=.||| .|.++..+++..+ ..|+++|.++.-++.+++. |. ..++..+-.... ...+.+|
T Consensus 28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga---~~~i~~~~~~~~~~~~~~~~~~~g~D 100 (176)
T d2fzwa2 28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GA---TECINPQDFSKPIQEVLIEMTDGGVD 100 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TC---SEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CC---cEEEeCCchhhHHHHHHHHHcCCCCc
Confidence 49999999887 3556777777775 6899999999888887763 32 122211111111 1235689
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+|+-.-. ....++.+..++++||.+++..
T Consensus 101 ~vid~~G------~~~~~~~~~~~~~~g~~~~~v~ 129 (176)
T d2fzwa2 101 YSFECIG------NVKVMRAALEACHKGWGVSVVV 129 (176)
T ss_dssp EEEECSC------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred EeeecCC------CHHHHHHHHHhhcCCceeEEEE
Confidence 9885321 2567888999999998877654
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.51 E-value=0.2 Score=37.25 Aligned_cols=85 Identities=20% Similarity=0.145 Sum_probs=55.7
Q ss_pred EEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----CCCCcccEEEec
Q 016981 161 NVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWSM 233 (379)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~~ 233 (379)
+|+=+|+ |.++..+++.+ |..|+.+|.+++.++.+++.+ .+.++.+|..+.. ..-...|.+++.
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-------~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~ 72 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDAGIEDADMYIAV 72 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-------hhhhccCcccchhhhhhcChhhhhhhccc
Confidence 5666665 66777766654 789999999999888766532 4678889987642 223567888763
Q ss_pred cccCCCCCH--HHHHHHHHHhcCCCCEE
Q 016981 234 ESGEHMPDK--SKFVSELARVTAPAGTI 259 (379)
Q Consensus 234 ~~l~~~~~~--~~~l~~~~r~LkpgG~l 259 (379)
..+. .-.+....+.+.+.-.+
T Consensus 73 -----t~~d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 73 -----TGKEEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp -----CSCHHHHHHHHHHHHHTTCCCEE
T ss_pred -----CCcHHHHHHHHHHHHHcCCceEE
Confidence 2222 33445566777777443
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.37 E-value=0.13 Score=39.96 Aligned_cols=89 Identities=20% Similarity=0.231 Sum_probs=56.1
Q ss_pred EEEEeCCcc--cHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 161 NVVDVGCGI--GGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 161 ~vLDiGcGt--G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+|+=||||. |.++..|.+.. ..+|+|+|.++..++.+++. +. +.....+.... .....|+|+..--.
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~---~~~~~~~~~~~--~~~~~dlIila~p~- 72 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI---IDEGTTSIAKV--EDFSPDFVMLSSPV- 72 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS---CSEEESCGGGG--GGTCCSEEEECSCH-
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hc---chhhhhhhhhh--hccccccccccCCc-
Confidence 578899985 33555665553 45899999999999888763 21 22222222221 23457988864322
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEE
Q 016981 238 HMPDKSKFVSELARVTAPAGTIII 261 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i 261 (379)
.....++.++...++++..+.-
T Consensus 73 --~~~~~vl~~l~~~~~~~~ii~d 94 (171)
T d2g5ca2 73 --RTFREIAKKLSYILSEDATVTD 94 (171)
T ss_dssp --HHHHHHHHHHHHHSCTTCEEEE
T ss_pred --hhhhhhhhhhhccccccccccc
Confidence 2336788999999998865543
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=93.36 E-value=0.17 Score=37.63 Aligned_cols=87 Identities=10% Similarity=0.119 Sum_probs=51.8
Q ss_pred EEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC----CCCcccEEEecc
Q 016981 162 VVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF----PDGQFDLVWSME 234 (379)
Q Consensus 162 vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~fD~V~~~~ 234 (379)
++=+|+ |.++..+++.+ |..|+.+|.++..++.++. .....+.+|..+... .-...|.|++..
T Consensus 3 ~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~--------~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~ 72 (134)
T d2hmva1 3 FAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS--------YATHAVIANATEENELLSLGIRNFEYVIVAI 72 (134)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT--------TCSEEEECCTTCTTHHHHHTGGGCSEEEECC
T ss_pred EEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH--------hCCcceeeecccchhhhccCCccccEEEEEc
Confidence 444444 66666666654 7899999999999887653 234567788876431 123567766532
Q ss_pred ccCCCCC-HHHHHHHHHHhcCCCCEEEEE
Q 016981 235 SGEHMPD-KSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 235 ~l~~~~~-~~~~l~~~~r~LkpgG~l~i~ 262 (379)
. .+ ....+-...+.+.|...++..
T Consensus 73 ~----~~~~~~~~~~~~~~~~~~~~iiar 97 (134)
T d2hmva1 73 G----ANIQASTLTTLLLKELDIPNIWVK 97 (134)
T ss_dssp C----SCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred C----chHHhHHHHHHHHHHcCCCcEEee
Confidence 1 22 233444445555566665543
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=93.32 E-value=0.056 Score=43.27 Aligned_cols=99 Identities=12% Similarity=0.110 Sum_probs=58.8
Q ss_pred CCCEEEEeCC---cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C-------CCCCc
Q 016981 158 RPKNVVDVGC---GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-------FPDGQ 226 (379)
Q Consensus 158 ~~~~vLDiGc---GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-------~~~~~ 226 (379)
++.+||=+.+ |.|..+..+++..|++|+++--++...+...+.++..|...-+.....|..+. . ...+.
T Consensus 28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~ 107 (189)
T d1gu7a2 28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE 107 (189)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCC
Confidence 3777777732 35677888998889999988655444454445555555421111111122111 0 01345
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+|+|+-. +. ...+....+.|+|||+++...
T Consensus 108 vdvv~D~-----vg--~~~~~~~~~~l~~~G~~v~~G 137 (189)
T d1gu7a2 108 AKLALNC-----VG--GKSSTGIARKLNNNGLMLTYG 137 (189)
T ss_dssp EEEEEES-----SC--HHHHHHHHHTSCTTCEEEECC
T ss_pred ceEEEEC-----CC--cchhhhhhhhhcCCcEEEEEC
Confidence 8888732 22 345678889999999998765
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.52 E-value=0.21 Score=41.83 Aligned_cols=85 Identities=19% Similarity=0.129 Sum_probs=60.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----------CCCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~ 225 (379)
++.+|=-|++.|. +..+++.+ |++|+.+|.+.+.++.+.+.+.....+.++.++.+|+.+.. -.-+
T Consensus 3 GKvalITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 81 (254)
T d2gdza1 3 GKVALVTGAAQGI-GRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG 81 (254)
T ss_dssp TCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 7788888877665 44444433 89999999999988887777655433357889999997732 0125
Q ss_pred cccEEEeccccCCCCCHHH
Q 016981 226 QFDLVWSMESGEHMPDKSK 244 (379)
Q Consensus 226 ~fD~V~~~~~l~~~~~~~~ 244 (379)
..|+++.+-......++++
T Consensus 82 ~iDilVnnAg~~~~~~~~~ 100 (254)
T d2gdza1 82 RLDILVNNAGVNNEKNWEK 100 (254)
T ss_dssp CCCEEEECCCCCCSSSHHH
T ss_pred CcCeecccccccccccchh
Confidence 7999998887777766543
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=92.51 E-value=0.28 Score=38.60 Aligned_cols=93 Identities=14% Similarity=0.216 Sum_probs=62.6
Q ss_pred CCEEEEeC--CcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC--CCCCCCcccEEEecc
Q 016981 159 PKNVVDVG--CGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QPFPDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiG--cGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~fD~V~~~~ 234 (379)
+.+||=.| .|.|..+..+++..|++|+++.-+++..+.+++. |. -.++.-+-.+ ..+....+|.|+-
T Consensus 32 ~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~l----Ga---d~vi~~~~~~~~~~l~~~~~~~vvD-- 102 (177)
T d1o89a2 32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSL----GA---SRVLPRDEFAESRPLEKQVWAGAID-- 102 (177)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH----TE---EEEEEGGGSSSCCSSCCCCEEEEEE--
T ss_pred CCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhh----cc---ccccccccHHHHHHHHhhcCCeeEE--
Confidence 45787765 3467789999998899999999999888777653 21 1122222111 1234466788752
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
.+. ...+.+..+.|+++|+++.....
T Consensus 103 ---~Vg--g~~~~~~l~~l~~~Griv~~G~~ 128 (177)
T d1o89a2 103 ---TVG--DKVLAKVLAQMNYGGCVAACGLA 128 (177)
T ss_dssp ---SSC--HHHHHHHHHTEEEEEEEEECCCT
T ss_pred ---Ecc--hHHHHHHHHHhccccceEeeccc
Confidence 221 45789999999999999987644
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=92.04 E-value=0.69 Score=35.85 Aligned_cols=93 Identities=16% Similarity=0.157 Sum_probs=58.5
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-ccCCCC------CCCCCccc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQQ------PFPDGQFD 228 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~------~~~~~~fD 228 (379)
++++||=+|+|. |..+..+++.. +.+|+++|.++.-.+.+++. |. ...+. .+..+. ....+.+|
T Consensus 28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~----Ga---~~~i~~~~~~~~~~~~~~~~~~~G~D 100 (176)
T d2jhfa2 28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GA---TECVNPQDYKKPIQEVLTEMSNGGVD 100 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TC---SEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh----CC---eeEEecCCchhHHHHHHHHHhcCCCC
Confidence 499999999865 44566666666 46999999999998888763 21 12221 121111 01235689
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCCC-EEEEEe
Q 016981 229 LVWSMESGEHMPDKSKFVSELARVTAPAG-TIIIVT 263 (379)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~LkpgG-~l~i~~ 263 (379)
+|+-... ....+..+...+++|| .+++..
T Consensus 101 ~vid~~G------~~~~~~~a~~~~~~~~g~~~~~~ 130 (176)
T d2jhfa2 101 FSFEVIG------RLDTMVTALSCCQEAYGVSVIVG 130 (176)
T ss_dssp EEEECSC------CHHHHHHHHHHBCTTTCEEEECS
T ss_pred EEEecCC------chhHHHHHHHHHhcCCcceEEec
Confidence 8875422 2456777788888874 555544
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.84 E-value=0.77 Score=37.88 Aligned_cols=79 Identities=18% Similarity=0.072 Sum_probs=59.8
Q ss_pred CCCEEEEeCCcccH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----------CCC
Q 016981 158 RPKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPD 224 (379)
Q Consensus 158 ~~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~ 224 (379)
.|+.+|=-|++.|. ++..++++ |++|+.+|.+++.++...+.+...+ .++.++.+|+.+.. -..
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~-G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~~ 82 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKL-KSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEI 82 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 47888888888875 34455554 8999999999999998888887765 57889999998742 124
Q ss_pred CcccEEEeccccCCC
Q 016981 225 GQFDLVWSMESGEHM 239 (379)
Q Consensus 225 ~~fD~V~~~~~l~~~ 239 (379)
+..|+++.+..+.+.
T Consensus 83 g~idilinnag~~~~ 97 (244)
T d1yb1a_ 83 GDVSILVNNAGVVYT 97 (244)
T ss_dssp CCCSEEEECCCCCCC
T ss_pred CCCceeEeecccccc
Confidence 678999887766654
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.82 E-value=0.97 Score=35.46 Aligned_cols=90 Identities=12% Similarity=0.116 Sum_probs=58.2
Q ss_pred CCEEEEeC--CcccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-------CCCCccc
Q 016981 159 PKNVVDVG--CGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQFD 228 (379)
Q Consensus 159 ~~~vLDiG--cGtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~fD 228 (379)
+.+||=.| .|.|..+..+++..|+ .|++++.+++......+. .|. ..++ |..+.. ..++.+|
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~---~ga---d~vi--~~~~~~~~~~~~~~~~~GvD 102 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSE---LGF---DAAV--NYKTGNVAEQLREACPGGVD 102 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHH---SCC---SEEE--ETTSSCHHHHHHHHCTTCEE
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhc---ccc---eEEe--eccchhHHHHHHHHhccCce
Confidence 37899877 5678999999998875 577778877655543322 232 1122 222211 1235699
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+|+-.- . ...+....++|+|||+++...
T Consensus 103 vv~D~v-----G--g~~~~~~~~~l~~~G~iv~~G 130 (187)
T d1vj1a2 103 VYFDNV-----G--GDISNTVISQMNENSHIILCG 130 (187)
T ss_dssp EEEESS-----C--HHHHHHHHTTEEEEEEEEEC-
T ss_pred EEEecC-----C--chhHHHHhhhccccccEEEec
Confidence 997432 1 457889999999999998865
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.70 E-value=0.83 Score=38.26 Aligned_cols=103 Identities=18% Similarity=0.137 Sum_probs=71.6
Q ss_pred CCEE-EEeCCcccH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----------CCC
Q 016981 159 PKNV-VDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPD 224 (379)
Q Consensus 159 ~~~v-LDiGcGtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~ 224 (379)
+++| |=-|++.|. .+..|++..+.+|+.++.+++.++.+.+.++..+ .++.++.+|+.+.. -..
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dvs~~~sv~~~~~~~~~~~ 79 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKEY 79 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEEecCCHHHHHHHHHHHHHhc
Confidence 5677 444666554 3445555447899999999999999888888766 47889999997742 012
Q ss_pred CcccEEEeccccCCCC---C-----H-----------HHHHHHHHHhcCCCCEEEEEe
Q 016981 225 GQFDLVWSMESGEHMP---D-----K-----------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 225 ~~fD~V~~~~~l~~~~---~-----~-----------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+..|+++.+-.+.+.. + . ..+.+.+...|+++|+++...
T Consensus 80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 6799999887654331 1 1 135566777889999987764
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=90.02 E-value=1 Score=37.31 Aligned_cols=103 Identities=21% Similarity=0.131 Sum_probs=69.9
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc---CCEEEEE-eCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----------CC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGI-TLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FP 223 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~gv-D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 223 (379)
.+++||=.|.+.| .+..+++.+ |++|+.. +-+...++.+.+.+...+ .++.++.+|+.+.. ..
T Consensus 5 ~GK~alITGas~G-IG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (259)
T d1ja9a_ 5 AGKVALTTGAGRG-IGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSH 81 (259)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcC--CCceEecCCCCCHHHHHHHHHHHHHH
Confidence 4889997786555 444444433 7888765 567777888888887766 47889999987631 12
Q ss_pred CCcccEEEeccccCCCCCH-------------------HHHHHHHHHhcCCCCEEEEEe
Q 016981 224 DGQFDLVWSMESGEHMPDK-------------------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 224 ~~~fD~V~~~~~l~~~~~~-------------------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
-+..|+++.+-...+..+. ..+.+.+...++.+|.+++..
T Consensus 82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~ 140 (259)
T d1ja9a_ 82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS 140 (259)
T ss_dssp HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccc
Confidence 3579999988776655321 235566677788888776654
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=89.59 E-value=1.2 Score=34.27 Aligned_cols=91 Identities=12% Similarity=0.175 Sum_probs=55.3
Q ss_pred CCCEEEEeCCcccH-HHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-------CCCCccc
Q 016981 158 RPKNVVDVGCGIGG-SSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQFD 228 (379)
Q Consensus 158 ~~~~vLDiGcGtG~-~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~fD 228 (379)
++.+||=+|+|.+. .+..+++.. +..|+++|.++.-++.+++ .|. ..++...-++.. ...+.+|
T Consensus 28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~----~GA---d~~in~~~~~~~~~~~~~~~~~~G~d 100 (175)
T d1cdoa2 28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGA---TDFVNPNDHSEPISQVLSKMTNGGVD 100 (175)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTC---CEEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH----cCC---cEEEcCCCcchhHHHHHHhhccCCcc
Confidence 48999999998854 455555555 5689999999998888776 232 222221111111 1134588
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCCCEEEE
Q 016981 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261 (379)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i 261 (379)
+|+-.-. . ...+..+...+++||.+++
T Consensus 101 ~vid~~G-----~-~~~~~~a~~~~~~g~~~~~ 127 (175)
T d1cdoa2 101 FSLECVG-----N-VGVMRNALESCLKGWGVSV 127 (175)
T ss_dssp EEEECSC-----C-HHHHHHHHHTBCTTTCEEE
T ss_pred eeeeecC-----C-HHHHHHHHHHhhCCCccee
Confidence 8864321 1 4567777777777654444
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=89.46 E-value=0.6 Score=39.82 Aligned_cols=66 Identities=14% Similarity=0.053 Sum_probs=48.9
Q ss_pred CEEEEeCCcccHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC-CCCcccEEEec
Q 016981 160 KNVVDVGCGIGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSM 233 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~V~~~ 233 (379)
++|||+=||.|.+..-+... |.+ +.++|+++.+.+..+.++ + -.+..+|+.++.. .-...|+++..
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a-G~~~~~a~e~d~~a~~~~~~N~-----~--~~~~~~Di~~~~~~~~~~~dll~~g 68 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDEFPKCDGIIGG 68 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH-TCEEEEEEECCHHHHHHHHHHC-----C--SEEEESCTTTSCGGGSCCCSEEEEC
T ss_pred CeEEEeCcCcCHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHC-----C--CCCccCChhhCCHhHcccccEEeec
Confidence 47999999999998887765 555 559999998888777664 2 3457789888742 12458999854
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=89.46 E-value=1.4 Score=36.81 Aligned_cols=103 Identities=17% Similarity=0.097 Sum_probs=69.9
Q ss_pred CCCEEEEeCCcccH---HHHHHHHHcCCEEEEEeCC-HHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----------CC
Q 016981 158 RPKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLS-PVQAQRANALAAARGLADKVSFQVGDALQQP----------FP 223 (379)
Q Consensus 158 ~~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~s-~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 223 (379)
+++++|=.|++.|. .+..|++. |++|+.+|.+ ...++.+.+.+...+ .++.+..+|+.+.. -.
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~-Ga~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~ 93 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRR-GCKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKI 93 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEeCCchHHHHHHHHHHHhhC--CceeeEeCCCCCHHHHHHHHHHHHHH
Confidence 47888888887775 34444444 8899999986 566676666666665 47888999987631 11
Q ss_pred CCcccEEEeccccCCCCCH-------------------HHHHHHHHHhcCCCCEEEEEe
Q 016981 224 DGQFDLVWSMESGEHMPDK-------------------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 224 ~~~fD~V~~~~~l~~~~~~-------------------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.+..|+++.+......... ..+.+.+.+.|+.+|.+++..
T Consensus 94 ~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 94 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 152 (272)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence 2578999877665544211 124566777888888877765
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=89.09 E-value=1.3 Score=36.53 Aligned_cols=103 Identities=16% Similarity=0.036 Sum_probs=67.0
Q ss_pred CCCEEEEeCCcccH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH-HcCCCCCeEEEEccCCCCC-----C-----C
Q 016981 158 RPKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAA-ARGLADKVSFQVGDALQQP-----F-----P 223 (379)
Q Consensus 158 ~~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~i~~~~~d~~~~~-----~-----~ 223 (379)
+++++|=-|++.|. .+..|++. |++|+.+|.+.+.++.+.+.+. ..+ .++.++.+|+.+.. + .
T Consensus 4 ~gK~~lITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (251)
T d1vl8a_ 4 RGRVALVTGGSRGLGFGIAQGLAEA-GCSVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKEK 80 (251)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 37889999987764 34444444 8999999999988877665543 334 46888899987632 0 1
Q ss_pred CCcccEEEeccccCCCCC--------H-----------HHHHHHHHHhcC--CCCEEEEEe
Q 016981 224 DGQFDLVWSMESGEHMPD--------K-----------SKFVSELARVTA--PAGTIIIVT 263 (379)
Q Consensus 224 ~~~fD~V~~~~~l~~~~~--------~-----------~~~l~~~~r~Lk--pgG~l~i~~ 263 (379)
-+..|+++.+-.+.+... + ..+.+.+...|+ .+|.++...
T Consensus 81 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~ 141 (251)
T d1vl8a_ 81 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIG 141 (251)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEEC
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccc
Confidence 257999998765544321 1 134555666664 356776664
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.36 E-value=0.22 Score=43.25 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=50.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC---CCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V~~~ 233 (379)
+.+|+|+-||.|.+...+.... ..+ +.++|+++.+.+..+.++ ++..++..|+.++. ++...+|+++..
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~------~~~~~~~~di~~~~~~~~~~~~~Dll~gg 75 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF------PHTQLLAKTIEGITLEEFDRLSFDMILMS 75 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC------TTSCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC------CCCCcccCchhhCCHhHcCCCCccEEEee
Confidence 5789999999999988776652 223 678999999888877764 34556778887653 222358988864
Q ss_pred c
Q 016981 234 E 234 (379)
Q Consensus 234 ~ 234 (379)
.
T Consensus 76 p 76 (343)
T d1g55a_ 76 P 76 (343)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=88.26 E-value=1 Score=37.35 Aligned_cols=77 Identities=21% Similarity=0.181 Sum_probs=57.0
Q ss_pred CCEEEEeCCcccH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CCC
Q 016981 159 PKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 225 (379)
++++|=-|++.|. .+..|++. |++|+.+|.+++.++.+.+.+...+...++.++.+|+.+.. + .-+
T Consensus 4 gK~alITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G 82 (258)
T d1iy8a_ 4 DRVVLITGGGSGLGRATAVRLAAE-GAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG 82 (258)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence 7788888988775 34555554 89999999999999888877766554457888999987632 0 126
Q ss_pred cccEEEecccc
Q 016981 226 QFDLVWSMESG 236 (379)
Q Consensus 226 ~fD~V~~~~~l 236 (379)
..|+++.+-.+
T Consensus 83 ~iDiLVnnAG~ 93 (258)
T d1iy8a_ 83 RIDGFFNNAGI 93 (258)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCcc
Confidence 79999977544
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.85 E-value=2 Score=35.14 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=52.4
Q ss_pred CCCEEEEeCCcccH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC------CCCCccc
Q 016981 158 RPKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFD 228 (379)
Q Consensus 158 ~~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~fD 228 (379)
.++++|=.|++.|. .+..+++. |++|+.+|.++..++.+.+.. .++..+.+|+.+.. -.-++.|
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~-G~~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~g~iD 78 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHAT-GARVVAVSRTQADLDSLVREC------PGIEPVCVDLGDWEATERALGSVGPVD 78 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHhCCce
Confidence 48899999987764 34444444 899999999998877655433 35788889987631 1236799
Q ss_pred EEEeccccCCC
Q 016981 229 LVWSMESGEHM 239 (379)
Q Consensus 229 ~V~~~~~l~~~ 239 (379)
+++.+-...+.
T Consensus 79 ilVnnAg~~~~ 89 (244)
T d1pr9a_ 79 LLVNNAAVALL 89 (244)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeccccccc
Confidence 99977655544
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=87.46 E-value=0.64 Score=34.05 Aligned_cols=84 Identities=13% Similarity=0.047 Sum_probs=57.6
Q ss_pred CcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----CCCCcccEEEeccccCCCCC
Q 016981 167 CGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWSMESGEHMPD 241 (379)
Q Consensus 167 cGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~~~~l~~~~~ 241 (379)
||.|..+..+++.+ +..++.+|.++...+..+. .++.++.+|..+.. ..-+..+.+++.. ++
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~--------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~-----~~ 72 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR--------SGANFVHGDPTRVSDLEKANVRGARAVIVNL-----ES 72 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH--------TTCEEEESCTTSHHHHHHTTCTTCSEEEECC-----SS
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh--------cCccccccccCCHHHHHHhhhhcCcEEEEec-----cc
Confidence 56688899999887 6678999999988776643 35788999987632 2234577777532 23
Q ss_pred H--HHHHHHHHHhcCCCCEEEEEe
Q 016981 242 K--SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 242 ~--~~~l~~~~r~LkpgG~l~i~~ 263 (379)
. ...+....+.+.|...++...
T Consensus 73 d~~n~~~~~~~r~~~~~~~iia~~ 96 (129)
T d2fy8a1 73 DSETIHCILGIRKIDESVRIIAEA 96 (129)
T ss_dssp HHHHHHHHHHHHHHCSSSCEEEEC
T ss_pred hhhhHHHHHHHHHHCCCceEEEEE
Confidence 2 334555667788988776654
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=87.13 E-value=0.71 Score=39.62 Aligned_cols=67 Identities=16% Similarity=0.090 Sum_probs=49.3
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC-CCCcccEEEec
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSM 233 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~V~~~ 233 (379)
.+.+|||+=||.|.+...|.+. |.+ +.++|+++.+++..+.++.. . .++|+.++.. .-..+|+++..
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a-G~~~v~a~e~d~~a~~~~~~N~~~------~--~~~Di~~~~~~~~~~~Dll~gg 78 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGE------K--PEGDITQVNEKTIPDHDILCAG 78 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSC------C--CBSCGGGSCGGGSCCCSEEEEE
T ss_pred CCCeEEEECccccHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHCCC------C--CcCchhcCchhhcceeeeeecc
Confidence 4789999999999999888765 555 56689999999988887631 1 2467776532 12458998864
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=86.72 E-value=1.2 Score=36.88 Aligned_cols=76 Identities=17% Similarity=0.188 Sum_probs=55.7
Q ss_pred CCCEEEEeCCcccH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CC
Q 016981 158 RPKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PD 224 (379)
Q Consensus 158 ~~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~ 224 (379)
+++.+|=-|.+.|. .+..|++. |++|+.+|.+++.++.+.+.++..+ .++.++.+|+.+.. + .-
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEE-GTAIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 37888988877664 34444444 8999999999999998888887665 47888999987632 0 12
Q ss_pred CcccEEEecccc
Q 016981 225 GQFDLVWSMESG 236 (379)
Q Consensus 225 ~~fD~V~~~~~l 236 (379)
+..|+++.+...
T Consensus 81 g~iDilVnnaG~ 92 (260)
T d1zema1 81 GKIDFLFNNAGY 92 (260)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCeehhhhcc
Confidence 579999876543
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=86.72 E-value=1.1 Score=37.42 Aligned_cols=78 Identities=18% Similarity=0.219 Sum_probs=56.5
Q ss_pred CCCEEEEeCCcccH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEccCCCCC----------CC
Q 016981 158 RPKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQP----------FP 223 (379)
Q Consensus 158 ~~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~----------~~ 223 (379)
+++++|=.|++.|. .+..|++. |++|+.+|.+++.++.+.+.+...+.. .++.++.+|+.+.. -.
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~-Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 82 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFAQE-GANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ 82 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 47888888877664 33444444 899999999999999988888776543 46889999987632 01
Q ss_pred CCcccEEEecccc
Q 016981 224 DGQFDLVWSMESG 236 (379)
Q Consensus 224 ~~~fD~V~~~~~l 236 (379)
-+..|+++.+-..
T Consensus 83 ~g~iDilvnnAG~ 95 (272)
T d1xkqa_ 83 FGKIDVLVNNAGA 95 (272)
T ss_dssp HSCCCEEEECCCC
T ss_pred hCCceEEEeCCcc
Confidence 2578999977544
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=86.65 E-value=1.7 Score=35.65 Aligned_cols=75 Identities=19% Similarity=0.108 Sum_probs=52.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----------CCCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~ 225 (379)
++++|=-|.+.|. +..+++.+ |++|+.+|.+++.++...+.+. .+..++.+|+.+.. -.-+
T Consensus 4 gK~alITGas~GI-G~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 77 (243)
T d1q7ba_ 4 GKIALVTGASRGI-GRAIAETLAARGAKVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAEFG 77 (243)
T ss_dssp TCEEEESSCSSHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhcccC
Confidence 7788888877664 44444433 8999999999988887766553 36778889987631 1136
Q ss_pred cccEEEeccccCCC
Q 016981 226 QFDLVWSMESGEHM 239 (379)
Q Consensus 226 ~fD~V~~~~~l~~~ 239 (379)
..|+++.+-...+.
T Consensus 78 ~iDilVnnAg~~~~ 91 (243)
T d1q7ba_ 78 EVDILVNNAGITRD 91 (243)
T ss_dssp SCSEEEECCCCCCC
T ss_pred Ccceehhhhhhccc
Confidence 79999977655544
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=86.21 E-value=0.44 Score=39.24 Aligned_cols=52 Identities=6% Similarity=0.110 Sum_probs=33.9
Q ss_pred EEEccCCCC--CCCCCcccEEEeccccC-------CCCC-------HHHHHHHHHHhcCCCCEEEEEe
Q 016981 212 FQVGDALQQ--PFPDGQFDLVWSMESGE-------HMPD-------KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 212 ~~~~d~~~~--~~~~~~fD~V~~~~~l~-------~~~~-------~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
++.+|..+. .++++++|+|++.=-.. ...+ ....++++.|+|+|||.+++..
T Consensus 7 i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~ 74 (256)
T d1g60a_ 7 IHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (256)
T ss_dssp EEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence 566776553 35678888888752211 1111 1457889999999999987654
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=86.13 E-value=1.6 Score=36.12 Aligned_cols=78 Identities=17% Similarity=0.130 Sum_probs=56.9
Q ss_pred CCCEEEEeCCcccH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----------CC
Q 016981 158 RPKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----------FP 223 (379)
Q Consensus 158 ~~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~ 223 (379)
+++++|=.|++.|. .+..+++. |++|+.++.++..++.+.+.+...+ .++.++.+|+.+.. ..
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~-G~~V~i~~r~~~~l~~~~~~~~~~~--~~~~~~~~D~s~~~~~~~~~~~~~~~~ 81 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGL-GARVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHVF 81 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeecCCHHHHHHHHHHHHHHh
Confidence 48899999987664 33444444 8899999999999988888887766 46888899987632 11
Q ss_pred CCcccEEEeccccCC
Q 016981 224 DGQFDLVWSMESGEH 238 (379)
Q Consensus 224 ~~~fD~V~~~~~l~~ 238 (379)
++..|+++.+-.+.+
T Consensus 82 ~g~idilinnag~~~ 96 (258)
T d1ae1a_ 82 DGKLNILVNNAGVVI 96 (258)
T ss_dssp TSCCCEEEECCCCCC
T ss_pred CCCcEEEeccccccc
Confidence 356888887655544
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=86.04 E-value=1.4 Score=33.03 Aligned_cols=94 Identities=11% Similarity=0.094 Sum_probs=56.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----CCCCcccEEE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVW 231 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~ 231 (379)
..+|+=+|+ |..+..+++.+ +..|+.+|.+++......+... ..++.++.+|..+.. ..-+..|.|+
T Consensus 3 knHiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~----~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi 76 (153)
T d1id1a_ 3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL----GDNADVIPGDSNDSSVLKKAGIDRCRAIL 76 (153)
T ss_dssp CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH----CTTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred CCEEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhh----cCCcEEEEccCcchHHHHHhccccCCEEE
Confidence 346777766 45556555544 7899999999865443333322 146889999987642 1224577777
Q ss_pred eccccCCCCCH--HHHHHHHHHhcCCCCEEEEEe
Q 016981 232 SMESGEHMPDK--SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 232 ~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.. ++. ...+....+-+.|...++...
T Consensus 77 ~~~-----~~d~~n~~~~~~~r~~~~~~~iia~~ 105 (153)
T d1id1a_ 77 ALS-----DNDADNAFVVLSAKDMSSDVKTVLAV 105 (153)
T ss_dssp ECS-----SCHHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred Ecc-----ccHHHHHHHHHHHHHhCCCCceEEEE
Confidence 642 232 233444566777887766543
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=85.83 E-value=1 Score=40.10 Aligned_cols=50 Identities=18% Similarity=0.084 Sum_probs=42.0
Q ss_pred CCCCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCC
Q 016981 157 KRPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGL 206 (379)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~ 206 (379)
.++..++|+|+-.|..+..++... ..+|+++|+++...+..+++++....
T Consensus 211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~ 263 (395)
T d2py6a1 211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD 263 (395)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence 357899999999999988777654 35899999999999999999887643
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=85.32 E-value=1.6 Score=36.09 Aligned_cols=79 Identities=15% Similarity=0.056 Sum_probs=57.3
Q ss_pred CCCEEEEeCCcccH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----------CC
Q 016981 158 RPKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----------FP 223 (379)
Q Consensus 158 ~~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~ 223 (379)
+++++|=-|++.|. .+..|++. |++|+.+|.+++.++.+.+.+...+ .++.++.+|+.+.. ..
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASL-GASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF 83 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence 37889988887664 34444444 8899999999999998888887765 47888899987631 01
Q ss_pred CCcccEEEeccccCCC
Q 016981 224 DGQFDLVWSMESGEHM 239 (379)
Q Consensus 224 ~~~fD~V~~~~~l~~~ 239 (379)
.+..|+++.+-...+.
T Consensus 84 ~~~idilvnnAG~~~~ 99 (259)
T d2ae2a_ 84 HGKLNILVNNAGIVIY 99 (259)
T ss_dssp TTCCCEEEECCCCCCC
T ss_pred CCCceEEEECCceecc
Confidence 2468999987665443
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=85.02 E-value=1.5 Score=36.67 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=56.7
Q ss_pred CCEEEEeCCcccH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEccCCCCC-----C-----CC
Q 016981 159 PKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQP-----F-----PD 224 (379)
Q Consensus 159 ~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~-----~-----~~ 224 (379)
++++|=-|++.|. .+..|++. |++|+.+|.++..++.+.+.+...+.+ .++.++.+|+.+.. + .-
T Consensus 4 gK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 82 (274)
T d1xhla_ 4 GKSVIITGSSNGIGRSAAVIFAKE-GAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF 82 (274)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 7888888887775 34444444 899999999999999888888776543 46889999987742 0 12
Q ss_pred CcccEEEecccc
Q 016981 225 GQFDLVWSMESG 236 (379)
Q Consensus 225 ~~fD~V~~~~~l 236 (379)
+..|+++.+...
T Consensus 83 G~iDilVnnAG~ 94 (274)
T d1xhla_ 83 GKIDILVNNAGA 94 (274)
T ss_dssp SCCCEEEECCCC
T ss_pred CCceEEEeeccc
Confidence 578999987543
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=84.82 E-value=1.5 Score=36.20 Aligned_cols=77 Identities=18% Similarity=0.155 Sum_probs=55.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----------CCCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~ 225 (379)
++++|=-|.+.|. +..+++++ |++|+.+|.+++.++.+.+.++..+ .++.++.+|+.+.. -.-+
T Consensus 11 gK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~~g 87 (255)
T d1fmca_ 11 GKCAIITGAGAGI-GKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISKLG 87 (255)
T ss_dssp TCEEEETTTTSHH-HHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 7788877766554 44444444 8999999999999998888887765 47888999987632 0125
Q ss_pred cccEEEeccccCC
Q 016981 226 QFDLVWSMESGEH 238 (379)
Q Consensus 226 ~fD~V~~~~~l~~ 238 (379)
..|+++.+-...+
T Consensus 88 ~iDilvnnAG~~~ 100 (255)
T d1fmca_ 88 KVDILVNNAGGGG 100 (255)
T ss_dssp SCCEEEECCCCCC
T ss_pred CCCEeeeCCcCCC
Confidence 7999988755543
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=84.55 E-value=1.3 Score=36.99 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=53.0
Q ss_pred CCCEEEEeCCcccH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CC
Q 016981 158 RPKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PD 224 (379)
Q Consensus 158 ~~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~ 224 (379)
+++.+|=.|++.|. .+..|++. |++|+.+|.++..++.+.+.+.. ..++.++.+|+.+.. + .-
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRY-GAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIAKH 80 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 37889999988775 23344443 89999999999888877766643 246888899987631 0 12
Q ss_pred CcccEEEecccc
Q 016981 225 GQFDLVWSMESG 236 (379)
Q Consensus 225 ~~fD~V~~~~~l 236 (379)
+..|+++.+-..
T Consensus 81 g~iD~lVnnAG~ 92 (268)
T d2bgka1 81 GKLDIMFGNVGV 92 (268)
T ss_dssp SCCCEEEECCCC
T ss_pred CCcceecccccc
Confidence 578999976554
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.03 E-value=1.9 Score=35.61 Aligned_cols=78 Identities=19% Similarity=0.167 Sum_probs=56.6
Q ss_pred CCCEEEEeCCcccH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C----C--
Q 016981 158 RPKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F----P-- 223 (379)
Q Consensus 158 ~~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~----~-- 223 (379)
+++++|=-|++.|. .+..+++. |++|+.+|.++..++.+.+.+...+ .++.++.+|+.+.. + .
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGF-GAVIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSMF 83 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC--CceEEEeccCCCHHHHHHHHHHHHHHh
Confidence 37889999987765 34444544 8999999999999988888877655 47889999987632 0 0
Q ss_pred CCcccEEEeccccCC
Q 016981 224 DGQFDLVWSMESGEH 238 (379)
Q Consensus 224 ~~~fD~V~~~~~l~~ 238 (379)
.+..|+++.+-...+
T Consensus 84 ~g~idilvnnAG~~~ 98 (259)
T d1xq1a_ 84 GGKLDILINNLGAIR 98 (259)
T ss_dssp TTCCSEEEEECCC--
T ss_pred CCCcccccccccccC
Confidence 267899998765544
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.73 E-value=4.3 Score=32.95 Aligned_cols=74 Identities=16% Similarity=0.028 Sum_probs=50.3
Q ss_pred CCCEEEEeCCcccH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC------CCCCccc
Q 016981 158 RPKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFD 228 (379)
Q Consensus 158 ~~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~fD 228 (379)
.++++|=.|++.|. .+..|++. |++|+.+|.++..++...+.. .++..+.+|+.+.. -.-++.|
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~g~iD 76 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHAS-GAKVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWDATEKALGGIGPVD 76 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCCS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHcCCCe
Confidence 37889988877764 23444443 899999999987776554432 36788889987632 1126799
Q ss_pred EEEeccccCC
Q 016981 229 LVWSMESGEH 238 (379)
Q Consensus 229 ~V~~~~~l~~ 238 (379)
+++.+-...+
T Consensus 77 ilVnnAg~~~ 86 (242)
T d1cyda_ 77 LLVNNAALVI 86 (242)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCcccc
Confidence 9997755543
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=83.54 E-value=1.9 Score=35.69 Aligned_cols=77 Identities=18% Similarity=0.194 Sum_probs=55.1
Q ss_pred CCEEEEeCCcccH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEccCCCCC----------CCC
Q 016981 159 PKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQP----------FPD 224 (379)
Q Consensus 159 ~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~----------~~~ 224 (379)
++.+|=-|++.|. .+..|++. |++|+.+|.+...++.+.+.+...+.. .++.++.+|+.+.. -.-
T Consensus 5 gKvalVTGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 83 (264)
T d1spxa_ 5 EKVAIITGSSNGIGRATAVLFARE-GAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF 83 (264)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 7788888877665 23444444 899999999999999888888776543 46889999987632 012
Q ss_pred CcccEEEecccc
Q 016981 225 GQFDLVWSMESG 236 (379)
Q Consensus 225 ~~fD~V~~~~~l 236 (379)
+..|+++.+-..
T Consensus 84 g~iDilvnnAG~ 95 (264)
T d1spxa_ 84 GKLDILVNNAGA 95 (264)
T ss_dssp SCCCEEEECCC-
T ss_pred CCCCEeeccccc
Confidence 578999876543
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=83.44 E-value=2.1 Score=35.22 Aligned_cols=78 Identities=17% Similarity=0.106 Sum_probs=56.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----------CCCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~ 225 (379)
++.+|=.|++.| .+..+++.+ |++|+.+|.++..++.+.+.++..+ .++.++.+|+.+.. -.-+
T Consensus 10 nKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~g 86 (251)
T d2c07a1 10 NKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTEHK 86 (251)
T ss_dssp SCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 677787787665 455555544 7899999999999998888887655 47889999997732 1126
Q ss_pred cccEEEeccccCCC
Q 016981 226 QFDLVWSMESGEHM 239 (379)
Q Consensus 226 ~fD~V~~~~~l~~~ 239 (379)
..|+++.+....+.
T Consensus 87 ~iDilvnnag~~~~ 100 (251)
T d2c07a1 87 NVDILVNNAGITRD 100 (251)
T ss_dssp CCCEEEECCCCCCC
T ss_pred Cceeeeeccccccc
Confidence 79999877655443
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=82.86 E-value=1.9 Score=33.74 Aligned_cols=75 Identities=19% Similarity=0.054 Sum_probs=49.6
Q ss_pred CCCEEEEeCCcccH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC---CCCCCcccEEE
Q 016981 158 RPKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFPDGQFDLVW 231 (379)
Q Consensus 158 ~~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~fD~V~ 231 (379)
++++||=.|++.|. .+..+++. |++|+.++.+++.++.+.+.+.... ++.+...|..+. .-.-+..|+|+
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~iDili 97 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGE-GAEVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDASRAEAVKGAHFVF 97 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHHHHHHHTTTCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhh-ccchhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHHHHHHHhcCcCeee
Confidence 48999999976654 34444444 8999999999998888777765532 344555665442 11124689888
Q ss_pred ecccc
Q 016981 232 SMESG 236 (379)
Q Consensus 232 ~~~~l 236 (379)
.+-..
T Consensus 98 n~Ag~ 102 (191)
T d1luaa1 98 TAGAI 102 (191)
T ss_dssp ECCCT
T ss_pred ecCcc
Confidence 76443
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=81.93 E-value=3 Score=34.24 Aligned_cols=77 Identities=12% Similarity=0.050 Sum_probs=54.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----------CCCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~ 225 (379)
++.+|=-|++.|. +..+++.+ |++|+.+|.+++.++.+.+.++..+ .++.++.+|+.+.. -.-+
T Consensus 2 gKValITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (257)
T d2rhca1 2 SEVALVTGATSGI-GLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERYG 78 (257)
T ss_dssp CCEEEEESCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 4556777766654 44444333 8999999999999998888887765 47889999987642 0136
Q ss_pred cccEEEeccccCC
Q 016981 226 QFDLVWSMESGEH 238 (379)
Q Consensus 226 ~fD~V~~~~~l~~ 238 (379)
..|+++.+-.+..
T Consensus 79 ~iDilVnnAG~~~ 91 (257)
T d2rhca1 79 PVDVLVNNAGRPG 91 (257)
T ss_dssp SCSEEEECCCCCC
T ss_pred CCCEEEecccccC
Confidence 7999997755543
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=81.80 E-value=5.8 Score=32.05 Aligned_cols=101 Identities=17% Similarity=0.146 Sum_probs=66.0
Q ss_pred CCCEEEEeCCcccH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-C---------CC
Q 016981 158 RPKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-F---------PD 224 (379)
Q Consensus 158 ~~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~---------~~ 224 (379)
.++.+|=.|++.|. .+..|+++ |++|+.++.+...++...+ . +..++.++.+|+.+.. . .-
T Consensus 4 ~gK~alItGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~---~--~~~~~~~~~~Dls~~~~i~~~~~~i~~~~ 77 (241)
T d2a4ka1 4 SGKTILVTGAASGIGRAALDLFARE-GASLVAVDREERLLAEAVA---A--LEAEAIAVVADVSDPKAVEAVFAEALEEF 77 (241)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH---T--CCSSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHH---H--cCCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 37889988988765 33344443 8999999999987655443 2 2357888999987632 0 12
Q ss_pred CcccEEEeccccCCCCCH-------------------HHHHHHHHHhcCCCCEEEEEec
Q 016981 225 GQFDLVWSMESGEHMPDK-------------------SKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 225 ~~fD~V~~~~~l~~~~~~-------------------~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+..|+++.+....+.... ..+.+.+...++.++.+.+...
T Consensus 78 g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss 136 (241)
T d2a4ka1 78 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGS 136 (241)
T ss_dssp SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred CCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccc
Confidence 579999887655544221 1245566677888887776653
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=81.36 E-value=1.3 Score=34.12 Aligned_cols=98 Identities=15% Similarity=0.161 Sum_probs=54.4
Q ss_pred CEEEEeCCcccH--HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC---CCCCCCCCcccEEEecc
Q 016981 160 KNVVDVGCGIGG--SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA---LQQPFPDGQFDLVWSME 234 (379)
Q Consensus 160 ~~vLDiGcGtG~--~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~fD~V~~~~ 234 (379)
++|-=||+|.-. ++..|++. |.+|+.+|.++.-++..++.-......+......... .+..-.-...|+|+..-
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v 80 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK-GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV 80 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred CEEEEECccHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence 467778888643 34445554 8899999999987776654321000000011110000 00000014578888642
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCEEEE
Q 016981 235 SGEHMPDKSKFVSELARVTAPAGTIII 261 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~i 261 (379)
.......+++++...|+++-.+++
T Consensus 81 ---~~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 81 ---PAIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp ---CGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred ---chhHHHHHHHHhhhccCCCCEEEE
Confidence 122347899999999999886554
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=80.90 E-value=0.2 Score=42.11 Aligned_cols=53 Identities=25% Similarity=0.416 Sum_probs=36.7
Q ss_pred EEEEccCCCC--CCCCCcccEEEeccccC-----------CCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 211 SFQVGDALQQ--PFPDGQFDLVWSMESGE-----------HMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 211 ~~~~~d~~~~--~~~~~~fD~V~~~~~l~-----------~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.|+++|..+. .++++++|+|++.=-.. ++......+.++.|+|||||.+++..
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~ 71 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG 71 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence 4667776653 46788999998753211 11112677889999999999998865
|